BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003273
         (834 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/854 (66%), Positives = 672/854 (78%), Gaps = 33/854 (3%)

Query: 8   FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
            P LK K PL    LF     FS T +    +TS L  QCKSL    LIHQQ++VQ L H
Sbjct: 5   LPRLKPKPPL----LFLTTFFFS-TASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPH 59

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
             P+H+I+ Y++ N+P+ ALS+L+R+ PS  +VFWWN LIRR+V L   ++  +L+ +M 
Sbjct: 60  -DPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQ 118

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           R GW PD YTFPFVLKACGE+PS RCG+SVHAV+ +SGF+ NVFV N L++MY RC    
Sbjct: 119 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 178

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            ARQ+FDEM + G+ D+VSWN+IVAAY Q GD+   + +F RMT D+ ++ D VSLVN L
Sbjct: 179 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 238

Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
            ACAS+G WSRGKQ                          CGMMEEA KVFERMKVKDVV
Sbjct: 239 PACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 298

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNAMVTGYS+IG F+DA  LF+K+R+E ++LNVVTWSAVIAGYAQRG G EALDVFRQM
Sbjct: 299 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDM 400
           + CG EPNVVTLVSLLSGCA  G LL GKETHC+ IK +L++D + P DDLMVINALIDM
Sbjct: 359 RLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 418

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y+KCKS   AR MFD I PK+R V TWTV+IG  +Q+G AN+AL LF QM Q D  V PN
Sbjct: 419 YSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPN 478

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
           AFT+SCALMACARL ALRFGRQIHAYVLRN++E  + FVANCLIDMYS+SGD+D ARVVF
Sbjct: 479 AFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVF 538

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           DN+ QRN VSWTSLMTGYGMHG G++A   F +M+K GL PDGVTF+V+LYACSHSGMVD
Sbjct: 539 DNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVD 598

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           QG+ YF+ M+K+FG+   AEHYAC+VDLL RA RLDEA+ELI GMPM+PTP +WVALL+ 
Sbjct: 599 QGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 658

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR++ANVELGE AAN+LLELES  DGSYTLLSNIYANA  WKDVARIR LMK+TG+KKRP
Sbjct: 659 CRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRP 718

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSWVQG++GTATFF GD +HP SQ+IY++L  L+QRIKA+GYVP   FALHDVDDEEKG
Sbjct: 719 GCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 778

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           DLL EHSEKLALAYGILTTAPG PIRITKNLR CGDCHSA T+IS+II HEII+RDS+RF
Sbjct: 779 DLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRF 838

Query: 821 HHFKEGSCTCKGYW 834
           HHFK GSC+C+GYW
Sbjct: 839 HHFKNGSCSCRGYW 852


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/854 (66%), Positives = 670/854 (78%), Gaps = 33/854 (3%)

Query: 8   FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
            P LK K PL    LF     FS T +    +TS L  QCKSL    L HQQ++VQ L H
Sbjct: 24  LPRLKPKPPL----LFLTTFFFS-TASSTTDLTSTLFHQCKSLASAELTHQQLLVQGLPH 78

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
             P+H+I+ Y++ N+P+ ALS+L+R+ PS  +VFWWN LIRR+V L   ++  +L+ +M 
Sbjct: 79  -DPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQ 137

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           R GW PD YTFPFVLKACGE+PS RCG+SVHAV+ +SGF+ NVFV N L++MY RC    
Sbjct: 138 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 197

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            ARQ+FDEM + G+ D+VSWN+IVAAY Q GD+   + +F RMT D+ ++ D VSLVN L
Sbjct: 198 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 257

Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
            ACAS+G WSRGKQ                          CGMMEEA KVFERMKVKDVV
Sbjct: 258 PACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 317

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNAMVTGYS+IG F+DA  LF+K+R+E ++LNVVTWSAVIAGYAQRG G EALDVFRQM
Sbjct: 318 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDM 400
             CG EPNVVTLVSLLSGCAS G LL GKETHC+ IK +L++D + P DDLMVINALIDM
Sbjct: 378 LLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 437

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y+KCKS   AR MFD I PK+R V TWTV+IG  +Q+G AN+AL LF QM Q D  V PN
Sbjct: 438 YSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPN 497

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
           AFT+SCALMACARL ALRFGRQIHAYVLRN++E  + FVANCLIDMYS+SGD+D ARVVF
Sbjct: 498 AFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVF 557

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           DN+ QRN VSWTSLMTGYGMHG G++A   F +M+K  L PDGVTF+V+LYACSHSGMVD
Sbjct: 558 DNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVD 617

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           QG+ YF+ M+K+FG+   AEHYAC+VDLL RA RLDEA+ELI GMPM+PTP +WVALL+ 
Sbjct: 618 QGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 677

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR++ANVELGE AAN+LLELES  DGSYTLLSNIYANA  WKDVARIR LMK+TG+KKRP
Sbjct: 678 CRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRP 737

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSWVQG++GTATFF GD +HP SQ+IY++L  L+QRIKA+GYVP   FALHDVDDEEKG
Sbjct: 738 GCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 797

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           DLL EHSEKLALAYGILTTAPG PIRITKNLR CGDCHSA T+IS+II HEII+RDS+RF
Sbjct: 798 DLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRF 857

Query: 821 HHFKEGSCTCKGYW 834
           HHFK GSC+C+GYW
Sbjct: 858 HHFKNGSCSCRGYW 871


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score = 1124 bits (2907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/844 (64%), Positives = 655/844 (77%), Gaps = 33/844 (3%)

Query: 22  LFTNIKLFSVTTT--PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVS 79
           L T++  +S  TT  P I + SLL RQCK+L    L HQQI V   T +  S+ + AY+ 
Sbjct: 14  LITSVHFYSTFTTSPPTIPLISLL-RQCKTLINAKLAHQQIFVHGFTEMF-SYAVGAYIE 71

Query: 80  HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
             A + A+SLLQR+ PS  +VFWWNALIRR+V+L L D+    + QM R GW PD YTFP
Sbjct: 72  CGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFP 131

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           FVLKACGE+PS R G+SVHA++C++G  SNVF+CN+++AMY RC  L  A Q+FDE+ + 
Sbjct: 132 FVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER 191

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG--DVKVQGDGVSLVNALSACASLGTWS 257
            I DIVSWN+I+AAY Q G +   L +  RM     +K++ D ++LVN L ACAS+    
Sbjct: 192 KIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQ 251

Query: 258 RGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            GKQ                          C  M EA KVFE +K KDVVSWNAMVTGYS
Sbjct: 252 HGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYS 311

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           +IGSF+ A +LFK M++E++KL+V+TWSAVIAGYAQ+GHG EALDVFRQMQ  GLEPNVV
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVD-GSHPDDLMVINALIDMYAKCKSVDVA 410
           TL SLLSGCASVGALL GK+TH Y IK +L+++     DDL+V+N LIDMYAKCKS  VA
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           R +FD+I  K+++V TWTVMIG Y+Q+G ANDAL LF Q+F+Q   +KPNAFTLSCALMA
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           CARL  LR GRQ+HAY LRN+ E  + +V NCLIDMYS+SGDID AR VFDN+K RNVVS
Sbjct: 492 CARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS 551

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WTSLMTGYGMHG G++A   FDQM+K G A DG+TFLV+LYACSHSGMVDQG+ YF  M 
Sbjct: 552 WTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMV 611

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           K FGI+  AEHYAC+VDLLGRA RL+EA+ELI+ M MEPT ++WVALL+  RIHAN+ELG
Sbjct: 612 KGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELG 671

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E AA++L EL +E DGSYTLLSN+YANA RWKDVARIRSLMKHTG++KRPGCSW+QGK+ 
Sbjct: 672 EYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKS 731

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
           T TFFVGDR+HP+S++IY +L  L++RIK MGYVPQTSFALHDVDDEEKGDLLFEHSEKL
Sbjct: 732 TTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 791

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+AYGILTTAPG PIRI KNLRICGDCHSA+T+ISMII+HEI+LRDS+RFHHFK+GSC+C
Sbjct: 792 AVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSC 851

Query: 831 KGYW 834
           + YW
Sbjct: 852 RSYW 855


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/855 (64%), Positives = 654/855 (76%), Gaps = 37/855 (4%)

Query: 8   FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
           FP+ KSK    L   FTN +L S  T P   IT+L  ++C SL    L+HQQ I+Q L  
Sbjct: 141 FPI-KSKL---LQSQFTNTRLLSCATIP---ITAL--KECNSLAHAKLLHQQSIMQGLLF 191

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
              ++LI  Y++ N+ + A+ LL+R+ PSP SVFWWN LIRRA+ L  P + F L+ QM 
Sbjct: 192 HLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMK 251

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
             GW PD YTFPFV KAC  L S   G+S+HA +  SGF SNVFVCNA+++MY +C  L 
Sbjct: 252 SLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALR 311

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
           +A  +FD++   GI D+VSWN++V+AY  + DA   L LF +MT    +  D +SLVN L
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
            ACASL    RG+Q                          CG MEEA KVF+RMK KDVV
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVV 431

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNAMVTGYS+ G  E A +LF++M +EN++L+VVTW+AVI GYAQRG G EALDVFRQM
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP--DDLMVINALID 399
             CG  PNVVTLVSLLS C SVGALL GKETHCY IK +L++DG  P  DDL VIN LID
Sbjct: 492 CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLID 551

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAKC+S +VAR MFD+++PK+RDV TWTVMIG Y+Q+G AN+AL LF  MF+ DK +KP
Sbjct: 552 MYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKP 611

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N FTLSCAL+ACARLAALRFGRQ+HAYVLRN Y  ++ FVANCLIDMYS+SGD+DTA++V
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIV 671

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FDN+ QRN VSWTSLMTGYGMHG G+ A   FD+MRK  L PDG+TFLV+LYACSHSGMV
Sbjct: 672 FDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMV 731

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D G+ +F+ MSK+FG+    EHYAC+VDL GRA RL EA++LI  MPMEPTP++WVALL+
Sbjct: 732 DHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLS 791

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR+H+NVELGE AANRLLELES  DGSYTLLSNIYANA RWKDVARIR  MK TG+KKR
Sbjct: 792 ACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKR 851

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PGCSW+QG++G ATF+VGDR+HPQSQ+IYE LA L+QRIKA+GYVPQTSFALHDVDDEEK
Sbjct: 852 PGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEK 911

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
           GDLLFEHSEKLALAYGILT  P  PIRITKNLRICGDCHSAIT+IS II HEIILRDS+R
Sbjct: 912 GDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSR 971

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK GSC+CKGYW
Sbjct: 972 FHHFKNGSCSCKGYW 986


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/847 (59%), Positives = 621/847 (73%), Gaps = 42/847 (4%)

Query: 20  NHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQ-----IIVQNLTHVPPSHLI 74
           +H +  + LFS T+ P  +IT   + +CK+++QV LIHQ+     I+  NLT    SHLI
Sbjct: 14  SHQYIKVSLFS-TSAP--EITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT----SHLI 66

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
           + Y+S    S A+SLL+R  PS   V+ WN+LIR        +    LF  M    W PD
Sbjct: 67  STYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPD 126

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
            YTFPFV KACGE+ S RCG S HA+   +GF SNVFV NAL+AMY+RC +LS AR++FD
Sbjct: 127 NYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFD 186

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           EM    + D+VSWN+I+ +YA+ G  +  L +F+RMT +   + D ++LVN L  CASLG
Sbjct: 187 EM---SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243

Query: 255 TWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
           T S GKQ                          CGMM+EA  VF  M VKDVVSWNAMV 
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
           GYS+IG FEDA  LF+KM++E +K++VVTWSA I+GYAQRG G+EAL V RQM   G++P
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKSV 407
           N VTL+S+LSGCASVGAL+ GKE HCY IK  + +    H D+ MVIN LIDMYAKCK V
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV 423

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           D AR MFD+++PK RDV TWTVMIG YSQ+G AN AL L  +MF++D   +PNAFT+SCA
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L+ACA LAALR G+QIHAY LRNQ   +  FV+NCLIDMY++ G I  AR+VFDN+  +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
            V+WTSLMTGYGMHG G++A   FD+MR+ G   DGVT LV+LYACSHSGM+DQG++YF+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            M   FG+S   EHYAC+VDLLGRA RL+ A+ LIE MPMEP P++WVA L+ CRIH  V
Sbjct: 604 RMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKV 663

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           ELGE AA ++ EL S  DGSYTLLSN+YANAGRWKDV RIRSLM+H GVKKRPGCSWV+G
Sbjct: 664 ELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
            +GT TFFVGD+THP +++IY++L   +QRIK +GYVP+T FALHDVDDEEK DLLFEHS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLALAYGILTT  G  IRITKNLR+CGDCH+A T++S II+H+IILRDS+RFHHFK GS
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGS 843

Query: 828 CTCKGYW 834
           C+CKGYW
Sbjct: 844 CSCKGYW 850


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/847 (58%), Positives = 622/847 (73%), Gaps = 42/847 (4%)

Query: 20  NHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQ-----IIVQNLTHVPPSHLI 74
           +H    + LFS   T  ++IT   + +CK+++QV LIHQ+     I+  NLT    SHLI
Sbjct: 14  SHQHLKVSLFS---TSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT----SHLI 66

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
           + Y+S    S A+SLL+R  PS   V+ WN+LIR        +     F  M    W PD
Sbjct: 67  STYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPD 126

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
            YTFPFV KACGE+ S RCG S HA+   +GF SNVFV NAL+AMY+RC +LS AR++FD
Sbjct: 127 NYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFD 186

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           EM    + D+VSWN+I+ +YA+ G  +  L +F++MT +   + D ++LVN L  CAS+G
Sbjct: 187 EM---PVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVG 243

Query: 255 TWSRGKQ------------------C--------GMMEEAKKVFERMKVKDVVSWNAMVT 288
           T S GKQ                  C        GMM+EA  VF  M VKDVVSWNAMV 
Sbjct: 244 TRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVA 303

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
           GYS+IG FEDA  LF++M++E +K++VVTWSA I+GYAQRG G+EAL V RQM   G++P
Sbjct: 304 GYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKSV 407
           N VTL+S+LSGCASVGAL+ GKE HCY IK  + +    H D+ MVIN LIDMYAKCK V
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKV 423

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           D+AR MFD+++PK RDV TWTVMIG YSQ+G AN AL L  +MF++D   +PNAFT+SCA
Sbjct: 424 DIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L+ACA LAAL  G+QIHAY LRNQ   +  FV+NCLIDMY++ GDI  AR+VFDN+ ++N
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKN 543

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
            V+WTSLMTGYGMHG G++A   F++MR+ G   DGVT LV+LYACSHSGM+DQG++YF+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            M  +FG+S   EHYAC+VDLLGRA RL+ A+ LIE MPMEP P++WVALL+ CRIH  V
Sbjct: 604 RMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKV 663

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           ELGE AA ++ EL S  DGSYTLLSN+YANAGRWKDV RIRSLM+H G+KKRPGCSWV+G
Sbjct: 664 ELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEG 723

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
            +GT TFFVGD+THP +++IY++L+  +QRIK +GYVP+T FALHDVDDEEK DLLFEHS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLALAYGILTT  G  IRITKNLR+CGDCH+A T++S II+HEIILRDS+RFHHFK G 
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGL 843

Query: 828 CTCKGYW 834
           C+CKGYW
Sbjct: 844 CSCKGYW 850


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/861 (57%), Positives = 615/861 (71%), Gaps = 66/861 (7%)

Query: 8   FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL-- 65
           FPL  SK PL +N    N+ L+  +T           +QCK+LTQ  L+HQQ I+     
Sbjct: 5   FPLFNSKPPLLINT--HNLLLYHSSTIS--------KQQCKTLTQAKLLHQQYIINGHLL 54

Query: 66  -THVPPSHLIAAYVSHNAPSPALSLLQR-ISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
            ++   ++LI  Y+S N+ + A+ LL++ ++PS  SV+WWN LIR A+    P+ A RLF
Sbjct: 55  NSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLF 114

Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
            +M    W PD YTFPFV KACGE+ +   G+S+H  +   GF+SNVFVCNA+++MY +C
Sbjct: 115 RRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKC 174

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             + +AR++FDE+   GICD V+WN+IV+ Y+        + LF  MT    +  D V +
Sbjct: 175 KAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGV 234

Query: 244 VNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKV 277
           VN L  C  LG    G+Q                          CG ME+A KVFERM+ 
Sbjct: 235 VNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRF 294

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           KDVV+WNAMVTGYS+ G FEDA +LF KMR+E ++ +VVTWS+VI+GYAQRG G EA+DV
Sbjct: 295 KDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDV 354

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH---PDDLMVI 394
           FRQM  C   PNVVTL+SLLS CASVGALL GKETHCY++K +L   G H    DDL VI
Sbjct: 355 FRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILK--GEHNDDTDDLAVI 412

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NALIDMYAKCKS++VAR MFD I PK+RDV TWTVMIG Y+Q+G AN AL LF +MF+ D
Sbjct: 413 NALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKID 472

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEMLIPFVANCLIDMYSRSGDI 513
             + PN FT+SC LMACARLAAL+FG+QIHAYVLR ++ +  + FVANCLIDMYS+SGD+
Sbjct: 473 NCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDV 532

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           DTA+VVFD++ +RN VSWTSL+TGYGMHG  + A   FD+MRKE L  DG+TFLV+LYAC
Sbjct: 533 DTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYAC 592

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SHSGM             +FG+    EHYAC+VDLLGRA RL EA+ LI  MP+EPTP++
Sbjct: 593 SHSGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVV 639

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W+ALL+ CRIH+N EL E AA +LLEL+++ DG+YTLLSNIYANA RWKDVARI  LMK 
Sbjct: 640 WIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKR 699

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
           TG+KK PG SWV+G++G  TF+VGDRTH QSQKIYE LA L++RIKA       +F+LHD
Sbjct: 700 TGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKA-------NFSLHD 752

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           VDDEEKGD L EHSEKLALAY ILT  PG PIRITKNLRICGD HSAIT+ISMI+ HEII
Sbjct: 753 VDDEEKGDQLSEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEII 812

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRDS+RFH FK GSC+CKGYW
Sbjct: 813 LRDSSRFHQFKNGSCSCKGYW 833


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/850 (56%), Positives = 617/850 (72%), Gaps = 60/850 (7%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQ------------NLTHVPP----------SHLIAAYVSH 80
           LL++CKS   V+ IHQQII              +L  +P           + ++A+Y++ 
Sbjct: 43  LLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLAC 102

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            A   AL +L+R++PSP    WWN LIR  ++    D+A  +  +M+R G  PD +T P 
Sbjct: 103 GATDYALLVLERVTPSP--AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 160

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           VLKACGELPS RCGS+ H +IC +GF+SNVF+CNAL+AMY+RC +L  A  +FDE+ Q G
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 220

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-----GDVKVQGDGVSLVNALSACASLGT 255
           I D++SWN+IV+A+ +S +A   L LF++MT          + D +S+VN L AC SL  
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 280

Query: 256 WSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTG 289
             + K+                          CG+ME A KVF  M+ KDVVSWNAMV G
Sbjct: 281 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 340

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YS+ G+FE AF LFK MR+EN+ L+VVTW+AVIAGY+QRG  HEAL++FRQM F G  PN
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVD---GSHPDDLMVINALIDMYAKCK 405
            VT++S+LS CAS+GA   G E H Y++K  +L++D   G   +DLMV NALIDMY+KC+
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           S   AR +FD I  + R+V TWTVMIG ++Q G +NDAL LF +M  +   V PNA+T+S
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 520

Query: 466 CALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           C LMACA LAA+R G+QIHAYVLR+ +YE    FVANCLIDMYS+ GD+DTAR VFD++ 
Sbjct: 521 CILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS 580

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           Q++ +SWTS+MTGYGMHG G +A   FD+MRK G  PD +TFLV+LYACSH GMVDQGL 
Sbjct: 581 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 640

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YFDSMS ++G++ RAEHYAC +DLL R+ RLD+A   ++ MPMEPT ++WVALL+ CR+H
Sbjct: 641 YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVH 700

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
           +NVEL E A N+L+E+ +E DGSYTL+SNIYA AGRWKDVARIR LMK +G+KKRPGCSW
Sbjct: 701 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 760

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           VQG++GTA+FFVGDR+HP S +IY +L  L+ RIKAMGYVP+T+FALHDVD+EEK +LL 
Sbjct: 761 VQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLV 820

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
           EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA T+IS I++HEI++RD +RFHHFK
Sbjct: 821 EHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFK 880

Query: 825 EGSCTCKGYW 834
            GSC+C GYW
Sbjct: 881 NGSCSCGGYW 890


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/850 (56%), Positives = 617/850 (72%), Gaps = 60/850 (7%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQ------------NLTHVPP----------SHLIAAYVSH 80
           LL++CKS   V+ IHQQII              +L  +P           + ++A+Y++ 
Sbjct: 50  LLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLAC 109

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            A   AL +L+R++PSP    WWN LIR  ++    D+A  +  +M+R G  PD +T P 
Sbjct: 110 GATDYALLVLERVTPSP--AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 167

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           VLKACGELPS RCGS+ H +IC +GF+SNVF+CNAL+AMY+RC +L  A  +FDE+ Q G
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 227

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-----GDVKVQGDGVSLVNALSACASLGT 255
           I D++SWN+IV+A+ +S +A   L LF++MT          + D +S+VN L AC SL  
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 287

Query: 256 WSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTG 289
             + K+                          CG+ME A KVF  M+ KDVVSWNAMV G
Sbjct: 288 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 347

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YS+ G+FE AF LFK MR+EN+ L+VVTW+AVIAGY+QRG  HEAL++FRQM F G  PN
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVD---GSHPDDLMVINALIDMYAKCK 405
            VT++S+LS CAS+GA   G E H Y++K  +L++D   G   +DLMV NALIDMY+KC+
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           S   AR +FD I  + R+V TWTVMIG ++Q G +NDAL LF +M  +   V PNA+T+S
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 527

Query: 466 CALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           C LMACA LAA+R G+QIHAYVLR+ +YE    FVANCLIDMYS+ GD+DTAR VFD++ 
Sbjct: 528 CILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS 587

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           Q++ +SWTS+MTGYGMHG G +A   FD+MRK G  PD +TFLV+LYACSH GMVDQGL 
Sbjct: 588 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 647

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YFDSMS ++G++ RAEHYAC +DLL R+ RLD+A   ++ MPMEPT ++WVALL+ CR+H
Sbjct: 648 YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVH 707

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
           +NVEL E A N+L+E+ +E DGSYTL+SNIYA AGRWKDVARIR LMK +G+KKRPGCSW
Sbjct: 708 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 767

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           VQG++GTA+FFVGDR+HP S +IY +L  L+ RIKAMGYVP+T+FALHDVD+EEK +LL 
Sbjct: 768 VQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLV 827

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
           EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA T+IS I++HEI++RD +RFHHFK
Sbjct: 828 EHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFK 887

Query: 825 EGSCTCKGYW 834
            GSC+C GYW
Sbjct: 888 NGSCSCGGYW 897


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/852 (55%), Positives = 607/852 (71%), Gaps = 62/852 (7%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP-----------PSH-----------LIAAYVSH 80
           LL++C+S+  V  IHQ+II   L   P           PSH           ++A+Y++ 
Sbjct: 37  LLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLAC 96

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            A S ALS+L+R+ PSP    WWN L+R  +     D A  +  +M+R G  PD +T P+
Sbjct: 97  GATSDALSVLERVVPSP--AVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPY 154

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
            LKACGELPS R GS+ H +IC +GF+SNVFVCNAL+AMY+R  +L  A  +FDE+ + G
Sbjct: 155 ALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKG 214

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-----DGVSLVNALSACASLGT 255
           I D++SWN+IVAA+ +  +    L LF+ MT  V  +      D +S+VN L ACASL  
Sbjct: 215 IDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKA 274

Query: 256 WSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTG 289
             + K+                          CG M++A  VF  M+ KDVVSWNAMVTG
Sbjct: 275 LPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G F  AF LFK MR+EN+ L+V+TWSAVIAGYAQRG+G EALD F+QM   G EPN
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVL------SVDGSHPDDLMVINALIDMYAK 403
            VT++SLLS CAS+GAL  G ETH Y++K+ L             +DL+V NALIDMY+K
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C+S   AR +F++I  + R+V TWTVMIG Y+Q G +NDAL LF +M  +   V PNA+T
Sbjct: 455 CRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYT 514

Query: 464 LSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           +SC LMACA L++LR G+QIHAYV R+ +YE  + FVANCLIDMYS+ GD+DTAR VFD+
Sbjct: 515 ISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSWTS+M+GYGMHG G +A   FD+M+K G  PD ++FLVLLYACSHSGMVDQG
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YFD M  ++G+ A A+HYAC++DLL R+ RLD+A + I+ MPMEP+  IWVALL+ CR
Sbjct: 635 LDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACR 694

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H+NVEL E A N+L+ +++E DGSYTL+SNIYA A RWKDVARIR LMK +G+KKRPGC
Sbjct: 695 VHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGC 754

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWVQGK+GTA+FFVGDR+HP S +IY +L  L+ RIK MGYVP+T+FALHDVDDEEK +L
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNL 814

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA  +IS I++HEII+RDS+RFHH
Sbjct: 815 LTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHH 874

Query: 823 FKEGSCTCKGYW 834
           FK GSC+C GYW
Sbjct: 875 FKNGSCSCGGYW 886


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/852 (56%), Positives = 613/852 (71%), Gaps = 62/852 (7%)

Query: 43  LLRQCKSLTQVYLIHQQIIV-------QNLTHVP----PSH-----------LIAAYVSH 80
           LL++C+S+  V  IHQ+II         +L  VP    PSH           ++A+Y++ 
Sbjct: 37  LLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLAC 96

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            A   ALS+L+R++PSP    WWN L+R  ++    D A  +  +M+R G  PD +T P+
Sbjct: 97  GATKDALSVLERVTPSP--AVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPY 154

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
            LKACGELPS  CG ++H +IC +GF+SNVFVCNAL+AMY+RC +L  A  +FDE+ + G
Sbjct: 155 ALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKG 214

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-----DGVSLVNALSACASL-- 253
           I D++SWN+IVAA+ +  +    L LF+ M+  V  +      D +S+VN L ACASL  
Sbjct: 215 IDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKA 274

Query: 254 --------------GTWSRG----------KQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
                         GT++             +CG M +A KVF  M+ KDVVSWNAMVTG
Sbjct: 275 LPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G+F  AF LF+ MR+EN+ L+V+TWSAVIAGYAQRG   EALD F+QM   G EPN
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVL------SVDGSHPDDLMVINALIDMYAK 403
            VT++SLLS CAS+GAL  G E H Y++K+ L             +DLMV NALIDMY+K
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C+S   AR +FD+I  + R+V TWTVMIG Y+Q G +NDAL +F +M  +   V PNA+T
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 464 LSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           +SC LMACA LAALR G+QIHAYV R+ +YE  + FVANCLIDMYS+ GD+DTAR VFD+
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSWTS+M+GYGMHG G +A   FD+M+K G  PD ++FLVLLYACSHSGMVDQG
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YFD M +++ + A AEHYAC++DLL R  RLD+A + I+ MPMEP+ +IWVALL+ CR
Sbjct: 635 LNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACR 694

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H+NVEL E A N+L+ +++E DGSYTL+SNIYANA RWKDVARIR LMK +G+KKRPGC
Sbjct: 695 VHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGC 754

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWVQGK+GTA+FFVGDR+HP S +IY +L  L+ RIK MGYVP+T+FALHDVDDEEK +L
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNL 814

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA T+IS I++HEII+RDS+RFHH
Sbjct: 815 LSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHH 874

Query: 823 FKEGSCTCKGYW 834
           FK GSC+C GYW
Sbjct: 875 FKNGSCSCGGYW 886


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/798 (57%), Positives = 594/798 (74%), Gaps = 38/798 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++A+Y++  A   AL +L+R++PSP    WWN LIR  ++    D+A  +  +M+R G  
Sbjct: 57  VVASYLACGATDYALLVLERVTPSP--AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D +T P VLKACGELPS RCGS+ H +IC +GF+SNVF+CNAL+AMY+RC +L  A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-----GDVKVQGDGVSLVNAL 247
           FDE+ Q GI D++SWN+IV+A+ +S +A   L LF++MT          + D +S+VN L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
            AC SL    + K+                          CG+ME A KVF  M+ KDVV
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 294

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNAMV GYS+ G+F+ AF LFK MR+EN+ L++VTW+AVIAGY+QRG  HEAL+VFRQM
Sbjct: 295 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVD---GSHPDDLMVINAL 397
            F G  PN VT++S+LS CAS+GA   G E H Y++K  +L++D   G   +DLMV NAL
Sbjct: 355 IFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 414

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMY+KC+S   AR +FD I  + R+V TWTVMIG ++Q G +NDAL LF +M  +   V
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTA 516
            PNA+T+SC LMACA LAA+R G+QIHAYVLR+ QY+    FVANCLI+MYS+ GD+DTA
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R VFD++ Q++ +SWTS+MTGYGMHG G +A   FD+MRK G  PD +TFLV+LYACSH 
Sbjct: 535 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 594

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMVDQGL YFDSMS ++G++ RAEHYA  +DLL R  RLD+A + ++ MPMEPT ++WVA
Sbjct: 595 GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVA 654

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ CR+H+NVEL E A N+L+E+ +E DGSYTL+SNIYA AGRWKDVARIR LMK +G+
Sbjct: 655 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 714

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KKRPGCSWVQG++GTA+FFVGDR+HP S +IY +L  L+ RIKAMGYVP+T+FALHDVD+
Sbjct: 715 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDE 774

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EEK +LL EHSEKLALAYG+LTT PG PIRITKNLR+CGDCHSA T+IS I++HEI++RD
Sbjct: 775 EEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRD 834

Query: 817 SNRFHHFKEGSCTCKGYW 834
            +RFHHFK GSC+C GYW
Sbjct: 835 PSRFHHFKNGSCSCGGYW 852


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/745 (59%), Positives = 562/745 (75%), Gaps = 36/745 (4%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+R G   D +T P VLKACGELPS RCGS+ H +IC +GF+SNVF+CNAL+AMY+RC +
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-----GDVKVQGDG 240
           L  A  +FDE+ Q GI D++SWN+IV+A+ +S +A   L LF++MT          + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 241 VSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFER 274
           +S+VN L AC SL    + K+                          CG+ME A KVF  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           M+ KDVVSWNAMV GYS+ G+F+ AF LFK MR+EN+ L++VTW+AVIAGY+QRG  HEA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVD---GSHPDD 390
           L+VFRQM F G  PN VT++S+LS CAS+GA   G E H Y++K  +L++D   G   +D
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           LMV NALIDMY+KC+S   AR +FD I  + R+V TWTVMIG ++Q G +NDAL LF +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSR 509
             +   V PNA+T+SC LMACA LAA+R G+QIHAYVLR+ QY+    FVANCLI+MYS+
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            GD+DTAR VFD++ Q++ +SWTS+MTGYGMHG G +A   FD+MRK G  PD +TFLV+
Sbjct: 421 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 480

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           LYACSH GMVDQGL YFDSMS ++G++ RAEHYA  +DLL R  RLD+A + ++ MPMEP
Sbjct: 481 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 540

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
           T ++WVALL+ CR+H+NVEL E A N+L+E+ +E DGSYTL+SNIYA AGRWKDVARIR 
Sbjct: 541 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 600

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           LMK +G+KKRPGCSWVQG++GTA+FFVGDR+HP S +IY +L  L+ RIKAMGYVP+T+F
Sbjct: 601 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 660

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
           ALHDVD+EEK +LL EHSEKLALAYG+LTT PG PIRITKNLR+CGDCHSA T+IS I++
Sbjct: 661 ALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVD 720

Query: 810 HEIILRDSNRFHHFKEGSCTCKGYW 834
           HEI++RD +RFHHFK GSC+C GYW
Sbjct: 721 HEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 230/493 (46%), Gaps = 76/493 (15%)

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
             VF  NALI    +  L +NA ++F  M  +                            
Sbjct: 153 LDVFVGNALIDAYAKCGLMENAVKVFNMMEFK---------------------------- 184

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQ 216
                      +V   NA++A Y++      A +LF  M +  I  D+V+W  ++A Y+Q
Sbjct: 185 -----------DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 233

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG--------KQCGMMEEA 268
            G +   L +F +M     +  + V++++ LSACASLG +S+G        K C +  + 
Sbjct: 234 RGCSHEALNVFRQMIFSGSLP-NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 292

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
               E    +D++ +NA++  YS+  SF+ A ++F  +  E  + NVVTW+ +I G+AQ 
Sbjct: 293 DFGGED---EDLMVYNALIDMYSKCRSFKAARSIFDDIPLE--ERNVVTWTVMIGGHAQY 347

Query: 329 GHGHEALDVFRQM--QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           G  ++AL +F +M  +  G+ PN  T+  +L  CA + A+ +GK+ H Y + R    D S
Sbjct: 348 GDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL-RHHQYDSS 406

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
                 V N LI+MY+KC  VD AR +FD+++ K+    +WT M+  Y  +G  ++AL +
Sbjct: 407 ---AYFVANCLINMYSKCGDVDTARHVFDSMSQKS--AISWTSMMTGYGMHGRGSEALDI 461

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAYVLRNQYEMLIPFVAN 501
           F +M +   +  P+  T    L AC+    +      F      Y L  + E        
Sbjct: 462 FDKMRKAGFV--PDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAY---- 515

Query: 502 CLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             ID+ +R G +D A + V D   +   V W +L++   +H   + A  A +++ +    
Sbjct: 516 -AIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 574

Query: 561 PDG-VTFLVLLYA 572
            DG  T +  +YA
Sbjct: 575 NDGSYTLISNIYA 587



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 132/318 (41%), Gaps = 43/318 (13%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPS--PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           ++A Y        A  L + +     P  +  W A+I    +      A  +F QM+  G
Sbjct: 192 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 251

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS----------GFDSNVFVCNALMAMY 180
             P+  T   VL AC  L +   G  +HA    +          G D ++ V NAL+ MY
Sbjct: 252 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 311

Query: 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD-VKVQGD 239
           ++C +   AR +FD++      ++V+W  ++  +AQ GD+   L LF  M  +   V  +
Sbjct: 312 SKCRSFKAARSIFDDIPLEER-NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 370

Query: 240 GVSLVNALSACASLGTWSRGKQ----------------------------CGMMEEAKKV 271
             ++   L ACA L     GKQ                            CG ++ A+ V
Sbjct: 371 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 430

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+ M  K  +SW +M+TGY   G   +A  +F KMR+     + +T+  V+   +  G  
Sbjct: 431 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 490

Query: 332 HEALDVFRQMQF-CGLEP 348
            + L  F  M    GL P
Sbjct: 491 DQGLSYFDSMSADYGLTP 508


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/640 (64%), Positives = 492/640 (76%), Gaps = 26/640 (4%)

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---- 260
           VSWN+IV+ Y+        + LF  MT    +  D V +VN L     LG +        
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGFFVGNALVDM 83

Query: 261 --QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
             +CG ME+A KVFERM+ KDVV+WNAMVTGYS+ G FEDA +LF KMR+E ++L+VVTW
Sbjct: 84  YAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTW 143

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           S+VI+GYAQRG G EA+DVFRQM  C   PNVVTL+SLLS CASVGALL GKETHCY++K
Sbjct: 144 SSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVK 203

Query: 379 RVLSVDGSH---PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            +L   G H    DDL VINALIDMYAKCKS++VAR MFD I PK+RDV TWTVMIG Y+
Sbjct: 204 FILK--GEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYA 261

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEM 494
           Q+G AN AL LF +MF+ D  + PN FT+SC LMACARLAAL+FG+QIHAYVLR ++ + 
Sbjct: 262 QHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDS 321

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            + FVANCLIDMYS+SGD+DTA+VVFD++ +RN VSWTSL+TGYGMHG            
Sbjct: 322 DVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG------------ 369

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
               L  DG+TFLV+LYACSHSGMVD+G+  F  MSK+F +    EHYAC+ DL GRA R
Sbjct: 370 --AALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGR 427

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L EA  LI  M MEPTP++W+ALL+ CR H+N EL E AA +LLEL+++ DG+YTLLSNI
Sbjct: 428 LCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNI 487

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YANA RWKDVARIR LMK TG+KKRPG SWV+G++G  TF+VGDRTH QSQKIYE LA L
Sbjct: 488 YANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADL 547

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
           ++RIKA+GYVPQT+F+LHDVDDEEKGD L EHSEKLALAY ILT  PG PIRITKNLRIC
Sbjct: 548 IKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRIC 607

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GD HSAIT+ISMI+ HEIILRDS+RFH FK GSC+CKGYW
Sbjct: 608 GDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 148/540 (27%), Positives = 240/540 (44%), Gaps = 106/540 (19%)

Query: 83  PSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM-MRRGWHPDEYTFPFV 141
           PS   S     + SP     WN+++       +P++A  LF +M +  G  PD      +
Sbjct: 6   PSKTTSSTIHYTRSPLISVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNI 65

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPG 200
           L   G L                GF    FV NAL+ MYA+C  +  A ++F+ M F+  
Sbjct: 66  LPVSGFL----------------GF----FVGNALVDMYAKCGKMEDASKVFERMRFK-- 103

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD--------------------------- 233
             D+V+WN +V  Y+Q+G  E  L LF +M  +                           
Sbjct: 104 --DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMD 161

Query: 234 -------VKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWN 284
                   + + + V+L++ LSACAS+G    GK+  C  ++   K        D+   N
Sbjct: 162 VFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVIN 221

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM--- 341
           A++  Y++  S E A A+F ++  ++   +VVTW+ +I GYAQ G  + AL +F +M   
Sbjct: 222 ALIDMYAKCKSLEVARAMFDEICPKD--RDVVTWTVMIGGYAQHGDANHALQLFSEMFKI 279

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             C + PN  T+  +L  CA + AL  GK+ H Y ++R   +D    D L V N LIDMY
Sbjct: 280 DNC-IVPNDFTISCVLMACARLAALKFGKQIHAYVLRRS-RIDS---DVLFVANCLIDMY 334

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           +K   VD A+V+FD+++ +N    +WT ++  Y  +G    AL L             + 
Sbjct: 335 SKSGDVDTAQVVFDSMSKRN--AVSWTSLLTGYGMHGA---ALVL-------------DG 376

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN-------CLIDMYSRSGDI- 513
            T    L AC+    +  G  +        Y M   FV +       C+ D++ R+G + 
Sbjct: 377 ITFLVVLYACSHSGMVDRGIDLF-------YRMSKDFVVDPGVEHYACMADLFGRAGRLC 429

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYA 572
           +  R++ D   +   V W +L++    H   + A +A  ++ +     DG  T L  +YA
Sbjct: 430 EATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYA 489



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 119/269 (44%), Gaps = 22/269 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSP--FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           ++  Y  +     ALSL  ++        V  W+++I    +      A  +F QM    
Sbjct: 111 MVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCR 170

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHA-----VICSSGFDS--NVFVCNALMAMYARC 183
             P+  T   +L AC  + +   G   H      ++     D   ++ V NAL+ MYA+C
Sbjct: 171 CRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKC 230

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-DVKVQGDGVS 242
            +L  AR +FDE+  P   D+V+W  ++  YAQ GDA   L LF+ M   D  +  +  +
Sbjct: 231 KSLEVARAMFDEIC-PKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFT 289

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW--NAMVTGYSRIGSFEDAF 300
           +   L ACA L     GKQ         V  R ++   V +  N ++  YS+ G  + A 
Sbjct: 290 ISCVLMACARLAALKFGKQIHAY-----VLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQ 344

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
            +F  M     K N V+W++++ GY   G
Sbjct: 345 VVFDSMS----KRNAVSWTSLLTGYGMHG 369


>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 655

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/609 (62%), Positives = 461/609 (75%), Gaps = 34/609 (5%)

Query: 17  LTLNHLF--TNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLI 74
           LT  H F  T     ++T+TP I  T  LL+QCKS+ Q +LIHQQ IVQ L      +LI
Sbjct: 21  LTSKHRFFSTTSGSIALTSTPVISPT--LLKQCKSIFQSHLIHQQAIVQGLLSHFSLNLI 78

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
           + Y++ NAPS ALSLLQ ++PSP +V+WWNALIRRAVRL L  ++  LF  M R  W PD
Sbjct: 79  STYLALNAPSHALSLLQCLTPSPSAVYWWNALIRRAVRLGLLQHSLSLFRTMRRLNWSPD 138

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
            YTFPFV KACGELPS   GS +HA++CS+GFDSNVFVCNA++AMY RC   SYARQ+FD
Sbjct: 139 HYTFPFVFKACGELPSFLHGSCIHAIVCSTGFDSNVFVCNAVVAMYGRCGASSYARQMFD 198

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACAS 252
           E+    + D+VSWN+++A Y QSGD + G+ LF RM   G+  +  D VSLVN L ACAS
Sbjct: 199 ELLMGEVFDLVSWNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACAS 258

Query: 253 LGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
           +G W  GKQ                          CG+M  A KVF+RM+ KDVVSWNAM
Sbjct: 259 MGDWLCGKQVHGFAIRYGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQHKDVVSWNAM 318

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           VTGYS+IG FEDA  LF+KMR+E ++L+VV+WSAVIAGYAQRG G+EAL+VFRQMQ CGL
Sbjct: 319 VTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRGLGYEALNVFRQMQVCGL 378

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMYAKCK 405
            PN VTLVSLLSGCASVGALL GKETHCY+IK VL+ D S P D+L+V+NA+IDMY KCK
Sbjct: 379 RPNEVTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCK 438

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ-DKLVKPNAFTL 464
            ++V R +F++I PK+R+V TWT MIG Y+Q+G ANDAL LF QM +Q ++ VKPNAFT+
Sbjct: 439 DINVGRAIFNSIPPKDRNVVTWTAMIGGYAQHGEANDALELFSQMLKQYNRSVKPNAFTI 498

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           SCALMACARLAALRFGRQIHA+VLR+QY+  + +VANCLIDMYS+SGD+D AR+VFDN+K
Sbjct: 499 SCALMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMK 558

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            RN VSWTSLMTGYGMHG G++A   FD+MR+EGL  DG+TFLV+LYACSHSGMVD+G+K
Sbjct: 559 HRNTVSWTSLMTGYGMHGHGEEAIKVFDEMRREGLVSDGITFLVVLYACSHSGMVDEGIK 618

Query: 585 YFDSMSKEF 593
           YF  M KEF
Sbjct: 619 YFHDMCKEF 627


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/539 (64%), Positives = 410/539 (76%), Gaps = 58/539 (10%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + P+VV+LV++L  CAS+GA L GK  H   ++      GS  +DL V NAL+DMYAKC 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVR-----SGSF-EDLFVGNALVDMYAKCG 62

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQ----------------------------- 436
            VD A  +FD I  K +DV +W  M+  YSQ                             
Sbjct: 63  MVDEASKVFDRI--KEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAV 120

Query: 437 ---------------------NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
                                +G ANDAL LF  MF+QD LVKPN FT+SCAL+ACARLA
Sbjct: 121 IAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLA 180

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           ALR GRQIHAY+LRN ++    +VANCLIDMY++SGDID AR VFDNLKQ+N VSWTSLM
Sbjct: 181 ALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLM 240

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TGYGMHG G +A   FD+MR+ GL PDGVT LV+LYACSHSGM+DQG+++F+SMSKEFG+
Sbjct: 241 TGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGV 300

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
               EHYAC+VDLLGRA RL+EA+ELIEGM MEP+ I+WVALL+GCRIHANVELGE AA 
Sbjct: 301 IPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAK 360

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           +LLEL SE DGSYTLLSNIYANA RWKDVAR+RSLMK++G++KRPGCSWVQGK+GT TF+
Sbjct: 361 QLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFY 420

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
           V D+THPQS++IYEIL  L QRIK +GYVP+TSFALHDVDDEEK DLLFEHSEKLALAYG
Sbjct: 421 VADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYG 480

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IL +APG PIRITKNLR+CGDCH+AIT+ISMII+HEIILRDS+RFHHFK+GSC+C GYW
Sbjct: 481 ILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/390 (37%), Positives = 212/390 (54%), Gaps = 62/390 (15%)

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMM 265
           GD+ ++ D VSLVN L ACAS+G W  GK                          +CGM+
Sbjct: 5   GDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMV 64

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
           +EA KVF+R+K KDVVSWNAMV GYS+IG FEDA  LF+KMR+EN++LNVV+WSAVIA +
Sbjct: 65  DEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAF 124

Query: 326 AQRGHGHEALDVFRQMQFC----------------GL-EPNVVTLVSLLSGCASVGALLL 368
           AQRG G E LDVFR+MQ                  GL +PN  T+   L  CA + AL L
Sbjct: 125 AQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRL 184

Query: 369 GKETHCYTIKRVLSVDGSHPDD--LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
           G++ H Y ++       +H D   L V N LIDMYAK   +DVAR +FD +  KN    +
Sbjct: 185 GRQIHAYILR-------NHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN--FVS 235

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT ++  Y  +G   +AL +F +M +    ++P+  TL   L AC+    +  G  I  +
Sbjct: 236 WTSLMTGYGMHGRGKEALEVFDEMRRVG--LQPDGVTLLVVLYACSHSGMIDQG--IEFF 291

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGL 543
              ++   +IP   +  C++D+  R+G ++ A  + + ++ + + + W +L++G  +H  
Sbjct: 292 NSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHAN 351

Query: 544 GDKAHWAFDQMRKEGLAPDG-VTFLVLLYA 572
            +    A  Q+ +     DG  T L  +YA
Sbjct: 352 VELGEHAAKQLLELNSENDGSYTLLSNIYA 381



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 58/288 (20%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD  +   VL AC  + +   G +VH +   SG   ++FV NAL+ MYA+C  +  A ++
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA--- 249
           FD + +    D+VSWN +V  Y+Q G  E  L LF +M  +  ++ + VS    ++A   
Sbjct: 71  FDRIKEK---DVVSWNAMVNGYSQIGRFEDALGLFEKMREE-NIELNVVSWSAVIAAFAQ 126

Query: 250 ----CASLGTWSRGKQCGMMEEAKKVFERMKVKD-------------------------- 279
               C +L  + R  Q G   +A ++F  M  +D                          
Sbjct: 127 RGLGCETLDVF-REMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLG 185

Query: 280 ----------------VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
                           +   N ++  Y++ G  + A  +F  ++Q+    N V+W++++ 
Sbjct: 186 RQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQK----NFVSWTSLMT 241

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           GY   G G EAL+VF +M+  GL+P+ VTL+ +L  C+  G +  G E
Sbjct: 242 GYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIE 289


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/734 (43%), Positives = 465/734 (63%), Gaps = 28/734 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W   I   V+    + A RL+ QM R G +PD+  F  V+KACG     + G  VH  I 
Sbjct: 88  WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           + GF+S+V V  AL +MY +C +L  ARQ+FD M +    D+VSWN I+A Y+Q+G    
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKR---DVVSWNAIIAGYSQNGQPYE 204

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVKDV 280
            L LF+ M  +  ++ +  +LV+ +  CA L    +GKQ  C  +    +        DV
Sbjct: 205 ALALFSEMQVN-GIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE-------SDV 256

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           +  N +V  Y++ G+   A  LF++M   +V     +W+A+I GY+     HEAL  F +
Sbjct: 257 LVVNGLVNMYAKCGNVNTAHKLFERMPIRDV----ASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           MQ  G++PN +T+VS+L  CA + AL  G++ H Y I+      G   +D+ V NAL++M
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR-----SGFESNDV-VGNALVNM 366

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC +V+ A  +F+ +  KN  V  W  +I  YSQ+G  ++ALALF +M  Q + +KP+
Sbjct: 367 YAKCGNVNSAYKLFERMPKKN--VVAWNAIISGYSQHGHPHEALALFIEM--QAQGIKPD 422

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
           +F +   L ACA   AL  G+QIH Y +R+ +E  +  V   L+D+Y++ G+++TA+ +F
Sbjct: 423 SFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNV-VVGTGLVDIYAKCGNVNTAQKLF 481

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           + + +++VVSWT+++  YG+HG G+ A   F +M++ G   D + F  +L ACSH+G+VD
Sbjct: 482 ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVD 541

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           QGL+YF  M  ++G++ + EHYAC+VDLLGRA  LDEA  +I+ M +EP   +W ALL  
Sbjct: 542 QGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGA 601

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH N+ELGE AA  L EL+ +  G Y LLSNIYA A RW+DVA++R +MK  GVKK+P
Sbjct: 602 CRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQP 661

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCS V       TF VGDRTHPQS++IY +L  L ++++  GYVP T+ AL DV++E K 
Sbjct: 662 GCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKE 721

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           ++L  HSEKLA+++GI+ T+PG PIRI KNLR+C DCH+A  FIS I+  EII+RD+NRF
Sbjct: 722 NILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRF 781

Query: 821 HHFKEGSCTCKGYW 834
           HH K G C+C  YW
Sbjct: 782 HHVKNGFCSCGDYW 795



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 188/342 (54%), Gaps = 13/342 (3%)

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +  Q +++ N V W   I GY + G  ++AL ++ QMQ  G+ P+ +  +S++  C S  
Sbjct: 75  QFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQS 134

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            L  G++ H   I R          D++V  AL  MY KC S++ AR +FD + PK RDV
Sbjct: 135 DLQAGRKVHEDIIARGFE------SDVIVGTALASMYTKCGSLENARQVFDRM-PK-RDV 186

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +W  +I  YSQNG   +ALALF +M  Q   +KPN+ TL   +  CA L AL  G+QIH
Sbjct: 187 VSWNAIIAGYSQNGQPYEALALFSEM--QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIH 244

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
            Y +R+  E  +  V N L++MY++ G+++TA  +F+ +  R+V SW +++ GY ++   
Sbjct: 245 CYAIRSGIESDV-LVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQH 303

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            +A   F++M+  G+ P+ +T + +L AC+H   ++QG +     +   G  +       
Sbjct: 304 HEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQG-QQIHGYAIRSGFESNDVVGNA 362

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           +V++  +   ++ A +L E MP +   + W A+++G   H +
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQHGH 403



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 20/242 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y      + A  L +R+     +V  WNA+I    +   P  A  LF++M  +G  
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMPKK--NVVAWNAIISGYSQHGHPHEALALFIEMQAQGIK 420

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD +    VL AC    +   G  +H     SGF+SNV V   L+ +YA+C  ++ A++L
Sbjct: 421 PDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKL 480

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F+ M +    D+VSW T++ AY   G  E  L LF++M  +   + D ++    L+AC+ 
Sbjct: 481 FERMPEQ---DVVSWTTMILAYGIHGHGEDALALFSKMQ-ETGTKLDHIAFTAILTACS- 535

Query: 253 LGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                     G++++  + F+ MK        +  +  +V    R G  ++A  + K M 
Sbjct: 536 --------HAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMS 587

Query: 308 QE 309
            E
Sbjct: 588 LE 589


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 303/717 (42%), Positives = 453/717 (63%), Gaps = 24/717 (3%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
           N F  F +++R G  PD YT PFV++AC +L + + G  +H ++   G D + FVC AL+
Sbjct: 13  NCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALV 72

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            MY +C  +  AR LFD+M +    D+V+W  ++  YA+ G A   L+LF +M  +  V 
Sbjct: 73  DMYVKCREIEDARFLFDKMQER---DLVTWTVMIGGYAECGKANESLVLFEKMREE-GVV 128

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D V++V  + ACA LG   + +      + KK F+     DV+   AM+  Y++ G  E
Sbjct: 129 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK-FQL----DVILGTAMIDMYAKCGCVE 183

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A  +F +M ++NV    ++WSA+IA Y   G G +ALD+FR M   G+ P+ +TL SLL
Sbjct: 184 SAREIFDRMEEKNV----ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C+ +  L +G+  H    K  L +D        V  AL+DMY KC+ ++ AR +FD +
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDH------FVCAALVDMYGKCREIEDARFLFDKM 293

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               RD+ TWTVMIG Y++ G AN++L LF +M ++   V P+   +   + ACA+L A+
Sbjct: 294 P--ERDLVTWTVMIGGYAECGNANESLVLFDKMREEG--VVPDKVAMVTVVFACAKLGAM 349

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
              R I  Y+ R ++++ +  +   +IDM+++ G +++AR +FD ++++NV+SW++++  
Sbjct: 350 HKARTIDDYIQRKKFQLDV-ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 408

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           YG HG G KA   F  M + G+ P+ +T + LLYACSH+G+V++GL++F  M +++ + A
Sbjct: 409 YGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRA 468

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             +HY C+VDLLGRA RLDEA++LIE M +E    +W A L  CR H +V L E AA  L
Sbjct: 469 DVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSL 528

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           LEL+ +  G Y LLSNIYANAGRW+DVA+ R LM    +KK PG +W++    +  F VG
Sbjct: 529 LELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVG 588

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D THP+S++IYE+L  L  +++ +GYVP T+F LHDVD+E K  +L+ HSEKLA+A+G++
Sbjct: 589 DTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLI 648

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            T   TPIRI KNLR+CGDCH+    +S I    II+RD+NRFHHFKEG+C+C  YW
Sbjct: 649 ATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 179/322 (55%), Gaps = 17/322 (5%)

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           ++ G+A+ G        FR++  CG  P+  TL  ++  C  +  L +G+  H    K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L +D        V  AL+DMY KC+ ++ AR +FD +  + RD+ TWTVMIG Y++ G A
Sbjct: 61  LDLDH------FVCAALVDMYVKCREIEDARFLFDKM--QERDLVTWTVMIGGYAECGKA 112

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           N++L LF +M ++   V P+   +   + ACA+L A+   R I  Y+ R ++++ +  + 
Sbjct: 113 NESLVLFEKMREEG--VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV-ILG 169

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             +IDMY++ G +++AR +FD ++++NV+SW++++  YG HG G KA   F  M   G+ 
Sbjct: 170 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 229

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEA 618
           PD +T   LLYACS    +  G +    +  +FG+    +H+ C  +VD+ G+   +++A
Sbjct: 230 PDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGLD--LDHFVCAALVDMYGKCREIEDA 286

Query: 619 VELIEGMPMEPTPIIWVALLNG 640
             L + MP E   + W  ++ G
Sbjct: 287 RFLFDKMP-ERDLVTWTVMIGG 307



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 221/513 (43%), Gaps = 82/513 (15%)

Query: 42  LLLRQCKSLTQVY---LIHQQI--IVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
            ++R C+ L  +    LIH  +     +L H   + L+  YV       A  L  ++   
Sbjct: 35  FVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQER 94

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
                 W  +I         + +  LF +M   G  PD+     V+ AC +L +      
Sbjct: 95  DLVT--WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARI 152

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +   I    F  +V +  A++ MYA+C  +  AR++FD M +    +++SW+ ++AAY  
Sbjct: 153 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK---NVISWSAMIAAYGY 209

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------- 260
            G     L LF RM     +  D ++L + L AC+ L     G+                
Sbjct: 210 HGQGRKALDLF-RMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHF 268

Query: 261 ----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                     +C  +E+A+ +F++M  +D+V+W  M+ GY+  G+  ++  LF KMR+E 
Sbjct: 269 VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREE- 327

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
                                             G+ P+ V +V+++  CA +GA+   +
Sbjct: 328 ----------------------------------GVVPDKVAMVTVVFACAKLGAMHKAR 353

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
               Y  ++   +      D+++  A+IDM+AKC  V+ AR +FD +  KN  V +W+ M
Sbjct: 354 TIDDYIQRKKFQL------DVILGTAMIDMHAKCGCVESAREIFDRMEEKN--VISWSAM 405

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I +Y  +G    AL LFP M +   L  PN  TL   L AC+    +  G +  + +  +
Sbjct: 406 IAAYGYHGQGRKALDLFPMMLRSGIL--PNKITLVSLLYACSHAGLVEEGLRFFSLMWED 463

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
                      C++D+  R+G +D A  + +++
Sbjct: 464 YSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 120/284 (42%), Gaps = 26/284 (9%)

Query: 38  KIT-SLLLRQC---KSLTQVYLIHQQI--IVQNLTHVPPSHLIAAYVSHNAPSPALSLLQ 91
           KIT + LL  C   K+L    LIH  +     +L H   + L+  Y        A  L  
Sbjct: 232 KITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFD 291

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
           ++         W  +I         + +  LF +M   G  PD+     V+ AC +L + 
Sbjct: 292 KMPERDLVT--WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAM 349

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
               ++   I    F  +V +  A++ M+A+C  +  AR++FD M +    +++SW+ ++
Sbjct: 350 HKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK---NVISWSAMI 406

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           AAY   G     L LF  M     +  + ++LV+ L AC+           G++EE  + 
Sbjct: 407 AAYGYHGQGRKALDLFPMMLRS-GILPNKITLVSLLYACS---------HAGLVEEGLRF 456

Query: 272 F----ERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           F    E   V+ DV  +  +V    R G  ++A  L + M  E 
Sbjct: 457 FSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 500


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 329/903 (36%), Positives = 491/903 (54%), Gaps = 114/903 (12%)

Query: 33  TTP--CIKITSLLLRQCKSLTQVYL---IHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSP 85
           T P  CI+I + +L++C+ L  + L   +H Q++V   ++     S L+  Y        
Sbjct: 83  TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +  ++S    +VF W A++     L   +   +LF  M+  G  PD + FP V KAC
Sbjct: 143 ARRMFDKMSER--NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 200

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM--------- 196
            EL + R G  V+  + S GF+ N  V  +++ M+ +C  +  AR+ F+E+         
Sbjct: 201 SELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWN 260

Query: 197 -----------FQPGI-C-----------DIVSWNTIVAAYAQSGDAEGGLMLFARMTG- 232
                      F+  + C           D V+WN I++ YAQSG  E     F  M G 
Sbjct: 261 IMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGL 320

Query: 233 -DVK---------------------------------VQGDGVSLVNALSACASLGTWSR 258
            D K                                 V+ + +++ +A+SAC +L     
Sbjct: 321 KDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRH 380

Query: 259 GKQ---------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
           G++                           C  +E A++ F  +K  D+VSWNAM+ GY+
Sbjct: 381 GREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYA 440

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             GS E+A  L  +M+ + ++ +++TW+ ++ G+ Q G G  AL+ F++M   G++PN  
Sbjct: 441 LRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTT 500

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+   L+ C  V  L LGKE H Y ++  + +         V +ALI MY+ C S++VA 
Sbjct: 501 TISGALAACGQVRNLKLGKEIHGYVLRNHIELSTG------VGSALISMYSGCDSLEVAC 554

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  ++   RDV  W  +I + +Q+G + +AL L  +M   +  V+ N  T+  AL AC
Sbjct: 555 SVFSELS--TRDVVVWNSIISACAQSGRSVNALDLLREMNLSN--VEVNTVTMVSALPAC 610

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           ++LAALR G++IH +++R   +    F+ N LIDMY R G I  +R +FD + QR++VSW
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDT-CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 669

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
             +++ YGMHG G  A   F Q R  GL P+ +TF  LL ACSHSG++++G KYF  M  
Sbjct: 670 NVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKT 729

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           E+ +    E YAC+VDLL RA + +E +E IE MP EP   +W +LL  CRIH N +L E
Sbjct: 730 EYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAE 789

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
            AA  L ELE +  G+Y L++NIY+ AGRW+D A+IR LMK  GV K PGCSW++ K   
Sbjct: 790 YAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKL 849

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
            +F VGD +HP  ++I   +  L   IK +GYVP T+F L DVD++EK   L  HSEK+A
Sbjct: 850 HSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIA 909

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           LA+G+++T  GTP+RI KNLR+CGDCHSA  FIS +   +II+RD+ RFHHF +G C+C 
Sbjct: 910 LAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCG 969

Query: 832 GYW 834
            YW
Sbjct: 970 DYW 972


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 307/762 (40%), Positives = 447/762 (58%), Gaps = 26/762 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  YV          +  ++S S   +F WN +I           +  LF QM+  G  
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESK--IFLWNLMISEYSGSGNYGESINLFKQMLELGIK 248

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ YTF  +LK    +     G  VH +IC  GF+S   V N+L++ Y     +  A++L
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDE+      D++SWN++++ Y ++G  + G+ +F +M     V  D  ++VN   ACA+
Sbjct: 309 FDELTDR---DVISWNSMISGYVKNGLDDRGIEIFIKMLV-FGVDIDLATMVNVFVACAN 364

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           +GT   GK            +R    +V   N ++  YS+ G    A  +F++M ++ V 
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDR----EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTV- 419

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              V+W+++I GY + G    A+ +F +M+  G+ P+V  + S+L+ CA  G L  GK  
Sbjct: 420 ---VSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIV 476

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H Y  +  L  +        V NAL DMYAKC S+  A  +F  +  K +DV +W  MIG
Sbjct: 477 HDYIRENNLETNS------FVSNALTDMYAKCGSMKDAHDVFSHM--KKKDVISWNTMIG 528

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y++N   N+AL LF +M ++ K   P+  T++C L ACA LAAL  GR+IH Y LRN Y
Sbjct: 529 GYTKNSLPNEALTLFAEMQRESK---PDGTTVACILPACASLAALDKGREIHGYALRNGY 585

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
                +V N ++DMY + G +  AR +FD +  +++VSWT ++ GYGMHG G +A   F+
Sbjct: 586 SE-DKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN 644

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           QMR  G+ PD V+F+ +LYACSHSG++D+G K F+ M KE  I    EHYAC+VDLL R 
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLART 704

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L +A + I+ MP++P   IW ALL GCRIH +V+L E  A R+ ELE E  G Y LL+
Sbjct: 705 GNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLA 764

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIYA A +W++V ++R  +   G+KK PGCSW++ K     F  GD + PQ++KI  +L 
Sbjct: 765 NIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLK 824

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L  ++K  GY P+T++AL + D+ EK   L  HSEKLA+A+G+L   PG  IR+TKNLR
Sbjct: 825 RLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLR 884

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +CGDCH    F+S   + EIILRDS+RFHHFK+GSC+C+GYW
Sbjct: 885 VCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 255/531 (48%), Gaps = 78/531 (14%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+ C E  S R G  V ++I SSG   +  +   L+ MY +C  L   R +FD++ +  
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES- 214

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
              I  WN +++ Y+ SG+    + LF +M  ++ ++ +  +  + L   A++     G+
Sbjct: 215 --KIFLWNLMISEYSGSGNYGESINLFKQML-ELGIKPNSYTFSSILKCFAAVARVEEGR 271

Query: 261 Q-----CGM---------------------MEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           Q     C +                     +  A+K+F+ +  +DV+SWN+M++GY    
Sbjct: 272 QVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGY---- 327

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
                                     V  G   RG     +++F +M   G++ ++ T+V
Sbjct: 328 --------------------------VKNGLDDRG-----IEIFIKMLVFGVDIDLATMV 356

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           ++   CA++G LLLGK  H Y+IK       +   ++   N L+DMY+KC  ++ A  +F
Sbjct: 357 NVFVACANIGTLLLGKVLHSYSIKA-----ATLDREVRFNNTLLDMYSKCGDLNSAIRVF 411

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           + +  K   V +WT MI  Y + G ++ A+ LF +M  + + V P+ + ++  L ACA  
Sbjct: 412 ERMDEKT--VVSWTSMITGYVREGLSDGAIKLFDEM--KSRGVVPDVYAVTSILNACAIN 467

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             L+ G+ +H Y+  N  E    FV+N L DMY++ G +  A  VF ++K+++V+SW ++
Sbjct: 468 GNLKSGKIVHDYIRENNLET-NSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTM 526

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + GY  + L ++A   F +M++E   PDG T   +L AC+    +D+G +     +   G
Sbjct: 527 IGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG-REIHGYALRNG 584

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            S        +VD+  +   L  A  L + +P +   + W  ++ G  +H 
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDL-VSWTVMIAGYGMHG 634


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 327/871 (37%), Positives = 478/871 (54%), Gaps = 87/871 (9%)

Query: 34  TPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALS 88
           TP     S LL QC   KSL     IH  I    L+  P   +HLI  Y        A  
Sbjct: 53  TPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARK 112

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL 148
           L+   S  P  +  W+ALI    +  L   A   F +M   G   +E+TF  VLKAC  +
Sbjct: 113 LVDE-SSEP-DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
              R G  VH V+  SGF+ +VFV N L+ MYA+CD    +++LFDE+ +    ++VSWN
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER---NVVSWN 227

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------- 260
            + + Y Q       + LF  M     ++ +  SL + ++AC  L   SRGK        
Sbjct: 228 ALFSCYVQXDFCGEAVGLFYEMVLS-GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 261 ------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
                             + G + +A  VFE++K  D+VSWNA++ G       E A  L
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 303 FKKMRQ-------------------------------ENVKL--------NVVTWSAVIA 323
             +M++                               E+ ++        +++ W+A+I+
Sbjct: 347 LGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIIS 406

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           GY+Q     EAL +F +M   G+  N  TL ++L   A +  + + ++ H  ++K     
Sbjct: 407 GYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK----- 461

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
            G H D + V+N+LID Y KC  V+ A  +F+       D+ ++T MI +Y+Q G   +A
Sbjct: 462 SGFHSD-IYVVNSLIDSYGKCSHVEDAERIFEECTIG--DLVSFTSMITAYAQYGQGEEA 518

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L LF +M  QD  +KP+ F  S  L ACA L+A   G+Q+H ++L+  + + I F  N L
Sbjct: 519 LKLFLEM--QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI-FAGNSL 575

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           ++MY++ G ID A   F  L +R +VSW++++ G   HG G +A   F+QM KEG++P+ 
Sbjct: 576 VNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 635

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +T + +L AC+H+G+V +   YF+SM + FG     EHYAC++DLLGRA +++EAVEL+ 
Sbjct: 636 ITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVN 695

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            MP E    +W ALL   RIH +VELG  AA  L  LE EK G++ LL+NIYA+AG+W++
Sbjct: 696 KMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWEN 755

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           VA +R LM+ + VKK PG SW++ K+   TF VGDR+H +SQ+IY  L  L   +   GY
Sbjct: 756 VAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGY 815

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           VP     LHDV+  EK  LL+ HSEKLA+A+G++ T  G PIR+ KNLR+C DCH+A  +
Sbjct: 816 VPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKY 875

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I  I++ EII+RD NRFHHFK+GSC+C  YW
Sbjct: 876 ICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 307/797 (38%), Positives = 475/797 (59%), Gaps = 29/797 (3%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +++LL  C S+ +++     II   L   H+  + L++ +    +   A  + Q I    
Sbjct: 80  SAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKI 139

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
             ++  + +++   R    D+A   F +M   G  P  Y F ++LK CG+    R G  +
Sbjct: 140 DELY--HTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEI 197

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +  +GF SNVF    ++ MYA+C  +  A ++FD M +    D+V WNTI++ YAQ+
Sbjct: 198 HCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPER---DLVCWNTIISGYAQN 254

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +  L L  RM  + K + D +++V+ L A A +G+   G+        +  FE    
Sbjct: 255 GFGKTALELVLRMQEEGK-RPDSITIVSILPAVADVGSLRIGRSIHGYS-MRAGFESF-- 310

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             V    A+V  YS+ GS   A  +F +M  + V    V+W+++I GY Q G    A+++
Sbjct: 311 --VNVSTALVDMYSKCGSVGTARLIFDRMTGKTV----VSWNSMIDGYVQNGDPGAAMEI 364

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M    +E   VT++  L  CA +G +  G+  H    +  L  D S      V+N+L
Sbjct: 365 FQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVS------VMNSL 418

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY+KCK VD+A  +F+ +  +++ + +W  MI  Y+QNG  N+A+  F +M  Q+  +
Sbjct: 419 ISMYSKCKRVDIAAEIFENL--QHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN--I 474

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP++FT+   + A A L+ L   + IH  V+R   +  + FVA  L+DMY++ G + TAR
Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNV-FVATALVDMYAKCGAVHTAR 533

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD + +R+V +W +++ GYG HGLG  A   F++M+KE + P+ VTFL +L ACSHSG
Sbjct: 534 KLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSG 593

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +V++G +YF SM K++G+    +HY  +VDLLGRANRL+EA + I+ MP+EP   ++ A+
Sbjct: 594 LVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAM 653

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  CRIH NVELGE AANR+ +L+ +  G + LL+NIYA A  W  VAR+R+ M+  G++
Sbjct: 654 LGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQ 713

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K PG S V+ +    TF+ G  +HPQ++KIY  L  L  RIKA GY+P T+ ++HDV+D 
Sbjct: 714 KTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTN-SVHDVEDV 772

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            K  LL  HSEKLA+A+ +L T+PGT I + KNLR+CGDCH+A  +IS++   EII+RD 
Sbjct: 773 VKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDM 832

Query: 818 NRFHHFKEGSCTCKGYW 834
            RFHHFK+G+C+C  YW
Sbjct: 833 RRFHHFKDGTCSCGDYW 849


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/734 (40%), Positives = 439/734 (59%), Gaps = 23/734 (3%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            +WN L+    +      +  LF +MM  G   D YTF  V K+   L S   G  +H  
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGY 220

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I  SGF     V N+L+A Y +   +  AR++FDEM +    D++SWN+I+  Y  +G A
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTER---DVISWNSIINGYVSNGLA 277

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E GL +F +M     ++ D  ++V+  + CA     S G+        K  F R   +D 
Sbjct: 278 EKGLSVFVQMLFS-GIEIDLATIVSVFAGCADSRLISLGRAVHCFG-VKACFSR---EDR 332

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              N ++  YS+ G  + A  +F++M   +V    V+++++IAGYA+ G   EA+ +F +
Sbjct: 333 FC-NTLLDMYSKCGDLDSAKVVFREMSGRSV----VSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G+ P+V T+ ++L+ CA    L  GK  H +  +  +  D      + V NAL+DM
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFD------IFVSNALMDM 441

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC S+  A ++F  +  K  D+ +W  +IG YS+N  AN+AL+LF  +   +K   P+
Sbjct: 442 YAKCGSMREAELVFSEMRVK--DIISWNTVIGGYSKNCYANEALSLF-NLLLVEKRFSPD 498

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T++C L ACA L+A   GR+IH Y++RN Y      VAN L+DMY++ G +  AR++F
Sbjct: 499 ERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLARLLF 557

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D++  +++VSWT ++ GYGMHG G +A   F+QMR+ G+ PD ++F+ LLYACSHSG+VD
Sbjct: 558 DDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVD 617

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G ++F+ M  E  I    EHYACIVD+L R   L +A   IE MP+ P   IW ALL G
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCG 677

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH +V+L E  A ++ ELE E  G Y L++NIYA A +W++V R+R  +   G++K P
Sbjct: 678 CRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNP 737

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++ K     F  GD ++P+++KI   L G+  R+   GY P T +AL D ++ EK 
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKE 797

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           + L  HSEKLA+A GI+++  G  IR+TKNLR+CGDCH    F+S +   EI+LRDSNRF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857

Query: 821 HHFKEGSCTCKGYW 834
           H FK+G C+C+G+W
Sbjct: 858 HQFKDGHCSCRGFW 871



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 155/567 (27%), Positives = 279/567 (49%), Gaps = 32/567 (5%)

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           W  D  T   VL+ C +  S + G  V   I  +GF  +  + + L  MY  C  L  A 
Sbjct: 90  WDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEAS 149

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD   Q  I   + WN ++   A+SGD  G + LF +M     V+ D  +      + 
Sbjct: 150 RVFD---QVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS-GVEMDSYTFSCVSKSF 205

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           +SL + + G+Q           ER  V      N++V  Y +    + A  +F +M + +
Sbjct: 206 SSLRSVNGGEQLHGYILKSGFGERNSVG-----NSLVAFYLKNHRVDSARKVFDEMTERD 260

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           V    ++W+++I GY   G   + L VF QM F G+E ++ T+VS+ +GCA    + LG+
Sbjct: 261 V----ISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGR 316

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             HC+ +K   S +          N L+DMY+KC  +D A+V+F  ++   R V ++T M
Sbjct: 317 AVHCFGVKACFSREDR------FCNTLLDMYSKCGDLDSAKVVFREMS--GRSVVSYTSM 368

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  Y++ G A +A+ LF +M  +++ + P+ +T++  L  CAR   L  G+++H ++  N
Sbjct: 369 IAGYAREGLAGEAVKLFEEM--EEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN 426

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
                I FV+N L+DMY++ G +  A +VF  ++ ++++SW +++ GY  +   ++A   
Sbjct: 427 DMGFDI-FVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSL 485

Query: 551 FDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA-CIVDL 608
           F+ +  E   +PD  T   +L AC+     D+G +    + +    S R  H A  +VD+
Sbjct: 486 FNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDM 543

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
             +   L  A  L + +  +   + W  ++ G  +H   +      N++ +   E D   
Sbjct: 544 YAKCGALLLARLLFDDITSKDL-VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPD-EI 601

Query: 669 TLLSNIYA--NAGRWKDVARIRSLMKH 693
           + +S +YA  ++G   +  R  ++M+H
Sbjct: 602 SFVSLLYACSHSGLVDEGWRFFNIMRH 628



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 240/480 (50%), Gaps = 45/480 (9%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+A Y+ ++    A  +   ++     V  WN++I   V   L +    +F+QM+  G  
Sbjct: 236 LVAFYLKNHRVDSARKVFDEMTER--DVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE 293

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D  T   V   C +      G +VH     + F      CN L+ MY++C  L  A+ +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVV 353

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F EM       +VS+ +++A YA+ G A   + LF  M  +  +  D  ++   L+ CA 
Sbjct: 354 FREMSGRS---VVSYTSMIAGYAREGLAGEAVKLFEEMEEE-GISPDVYTVTAVLNCCA- 408

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                R +   +++E K+V E +K      D+   NA++  Y++ GS  +A  +F +MR 
Sbjct: 409 -----RNR---LLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFR----QMQFCGLEPNVVTLVSLLSGCASVG 364
           +    ++++W+ VI GY++  + +EAL +F     + +F    P+  T+  +L  CAS+ 
Sbjct: 461 K----DIISWNTVIGGYSKNCYANEALSLFNLLLVEKRF---SPDERTVACVLPACASLS 513

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           A   G+E H Y ++        +  D  V N+L+DMYAKC ++ +AR++FD I  K  D+
Sbjct: 514 AFDKGREIHGYIMR------NGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSK--DL 565

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +WTVMI  Y  +G   +A+ALF QM Q    ++P+  +    L AC+    +  G +  
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFNQMRQAG--IEPDEISFVSLLYACSHSGLVDEGWRFF 623

Query: 485 AYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
             ++R++ + + P V +  C++DM +R+G++  A    +N+    +   W +L+ G  +H
Sbjct: 624 N-IMRHECK-IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIH 681


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 307/803 (38%), Positives = 476/803 (59%), Gaps = 28/803 (3%)

Query: 33  TTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQR 92
           T PCI     LL+  +   +V+ +  +    ++  V  S ++  Y   N  + A  L  R
Sbjct: 218 TFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANS-IVGMYTKCNDLNGARQLFDR 276

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           + P    V  WN++I           A RLF +M +    P+ YTF   L+AC +    +
Sbjct: 277 M-PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 335

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G  +HA +  S +  NVFV NAL+AMYAR   +  A  +F  M      D +SWN++++
Sbjct: 336 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD---WDTISWNSMLS 392

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
            + Q+G     L  +  M  D   + D V++++ ++A A  G    G Q         + 
Sbjct: 393 GFVQNGLYHEALQFYHEMR-DAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD 451

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
             ++V      N++V  Y++  S +    +F KM  ++V    V+W+ +IAG+AQ G   
Sbjct: 452 SDLQVG-----NSLVDMYAKFCSMKYMDCIFDKMPDKDV----VSWTTIIAGHAQNGSHS 502

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
            AL++FR++Q  G++ +V+ + S+L  C+ +  +   KE H Y I++ LS       DL+
Sbjct: 503 RALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-------DLV 555

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           + N ++D+Y +C +VD A  MF+ I  K  DV +WT MI  Y  NG AN+AL LF  M  
Sbjct: 556 LQNGIVDVYGECGNVDYAARMFELIEFK--DVVSWTSMISCYVHNGLANEALELFHLM-- 611

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           ++  V+P++ +L   L A A L+AL+ G++IH +++R  + +L   +A+ L+DMY+R G 
Sbjct: 612 KETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGF-VLEGSLASTLVDMYARCGT 670

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ +R VF+ ++ +++V WTS++  YGMHG G  A   F +M  E +APD + F+ +LYA
Sbjct: 671 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 730

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSHSG++++G ++ +SM  E+ +    EHY C+VDLLGRAN L+EA + ++GM +EPT  
Sbjct: 731 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAE 790

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W ALL  C+IH+N ELGE+AA +LLE++ E  G+Y L+SN+YA   RWKDV  +R  MK
Sbjct: 791 VWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMK 850

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI-KAMGYVPQTSFAL 751
            +G+KK PGCSW++      TF   D++HPQS +IY  L+ + +++ K  GYV QT F L
Sbjct: 851 ASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVL 910

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           H+  +EEK  +L+ HSE+LA+AYG+LTT  G  +RITKNLR+CGDCH+    IS     E
Sbjct: 911 HNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERE 970

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           +++RD+NRFHHFK G C+C   W
Sbjct: 971 LVMRDANRFHHFKGGVCSCGDVW 993



 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/565 (29%), Positives = 300/565 (53%), Gaps = 29/565 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WNA+I   V    P  +  L+ +M   G   D  TFP +LKACG L   RCG+ VH
Sbjct: 180 TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVH 239

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +    G+ S VFV N+++ MY +C+ L+ ARQLFD M  P   D+VSWN++++AY+ +G
Sbjct: 240 GLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM--PEKEDVVSWNSMISAYSSNG 297

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            +   L LF  M     +  +  + V AL AC      S   + GM   A  V +     
Sbjct: 298 QSIEALRLFGEMQ-KASLAPNTYTFVAALQACED----SSFIKQGMFIHA-TVLKSSYYI 351

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +V   NA++  Y+R G   +A  +F  M       + ++W+++++G+ Q G  HEAL  +
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDD----WDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+  G +P++V ++S+++  A  G  L G + H Y +K  L        DL V N+L+
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD------SDLQVGNSLV 461

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAK  S+     +FD +  K  DV +WT +I  ++QNG  + AL LF ++  Q + + 
Sbjct: 462 DMYAKFCSMKYMDCIFDKMPDK--DVVSWTTIIAGHAQNGSHSRALELFREV--QLEGID 517

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            +   +S  L+AC+ L  +   ++IH+Y++R     L+  + N ++D+Y   G++D A  
Sbjct: 518 LDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV--LQNGIVDVYGECGNVDYAAR 575

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F+ ++ ++VVSWTS+++ Y  +GL ++A   F  M++ G+ PD ++ + +L A +    
Sbjct: 576 MFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSA 635

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           + +G +    + ++ G        + +VD+  R   L+++  +   +  +   ++W +++
Sbjct: 636 LKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL-VLWTSMI 693

Query: 639 NGCRIHANVELGELAANRLLELESE 663
           N   +H     G  A +    +E E
Sbjct: 694 NAYGMHG---CGRAAIDLFRRMEDE 715



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 180/380 (47%), Gaps = 47/380 (12%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG + +A+K+F+ M  K + +WNAM+  Y   G    +  L+++MR   + L+  T+  
Sbjct: 162 KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPC 221

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +                                   L  C  +     G E H   IK  
Sbjct: 222 I-----------------------------------LKACGLLKDRRCGAEVHGLAIKE- 245

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                 +   + V N+++ MY KC  ++ AR +FD + P+  DV +W  MI +YS NG +
Sbjct: 246 -----GYVSIVFVANSIVGMYTKCNDLNGARQLFDRM-PEKEDVVSWNSMISAYSSNGQS 299

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL LF +M  Q   + PN +T   AL AC   + ++ G  IHA VL++ Y + + FVA
Sbjct: 300 IEALRLFGEM--QKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV-FVA 356

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LI MY+R G +  A  +F N+   + +SW S+++G+  +GL  +A   + +MR  G  
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 416

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD V  + ++ A + SG    G++   + + + G+ +  +    +VD+  +   +     
Sbjct: 417 PDLVAVISIIAASARSGNTLNGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 475

Query: 621 LIEGMPMEPTPIIWVALLNG 640
           + + MP +   + W  ++ G
Sbjct: 476 IFDKMP-DKDVVSWTTIIAG 494



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 27/233 (11%)

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTL----SCALMACARLAALRFGRQIHAYVLRNQ 491
           + G  N+A      +F       P+ F+L    S  L  C    AL  G+Q+HA+++ + 
Sbjct: 88  KRGSVNEAFQSLTDLFANQS---PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSN 144

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
                 F++  L+ MY + G +  A  +FD +  + + +W +++  Y  +G    +   +
Sbjct: 145 ALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY 204

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA-------C 604
            +MR  G+  D  TF  +L AC        GL        E    A  E Y         
Sbjct: 205 REMRVSGIPLDACTFPCILKAC--------GLLKDRRCGAEVHGLAIKEGYVSIVFVANS 256

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL-----NGCRIHANVELGEL 652
           IV +  + N L+ A +L + MP +   + W +++     NG  I A    GE+
Sbjct: 257 IVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEM 309


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 307/803 (38%), Positives = 477/803 (59%), Gaps = 28/803 (3%)

Query: 33  TTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQR 92
           T PCI     LL+  +   +V+ +  +    ++  V  S ++  Y   N  + A  L  R
Sbjct: 182 TFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANS-IVGMYTKCNDLNGARQLFDR 240

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           + P    V  WN++I           A RLF +M +    P+ YTF   L+AC +    +
Sbjct: 241 M-PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 299

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G  +HA +  S +  NVFV NAL+AMYAR   +  A  +F  M      D +SWN++++
Sbjct: 300 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD---WDTISWNSMLS 356

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
            + Q+G     L  +  M  D   + D V++++ ++A A  G    G Q         + 
Sbjct: 357 GFVQNGLYHEALQFYHEMR-DAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLD 415

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
             ++V      N++V  Y++  S +    +F KM  ++V    V+W+ +IAG+AQ G   
Sbjct: 416 SDLQVG-----NSLVDMYAKFCSMKYMDCIFDKMPDKDV----VSWTTIIAGHAQNGSHS 466

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
            AL++FR++Q  G++ +V+ + S+L  C+ +  +   KE H Y I++ LS       DL+
Sbjct: 467 RALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-------DLV 519

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           + N ++D+Y +C +VD A  MF+ I  K  DV +WT MI  Y  NG AN+AL LF  M  
Sbjct: 520 LQNGIVDVYGECGNVDYAARMFELIEFK--DVVSWTSMISCYVHNGLANEALELFHLM-- 575

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           ++  V+P++ +L   L A A L+AL+ G++IH +++R  + +L   +A+ L+DMY+R G 
Sbjct: 576 KETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGF-VLEGSLASTLVDMYARCGT 634

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ +R VF+ ++ +++V WTS++  YGMHG G  A   F +M  E +APD + F+ +LYA
Sbjct: 635 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 694

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSHSG++++G ++ +SM  E+ +    EHYAC+VDLLGRAN L+EA + ++GM +EPT  
Sbjct: 695 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAE 754

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W ALL  C+IH+N ELGE+AA +LLE++ E  G+Y L+SN+Y+   RWKDV  +R  MK
Sbjct: 755 VWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMK 814

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI-KAMGYVPQTSFAL 751
            +G+KK PGCSW++      TF   D++HPQS +IY  L+ + +++ K  GYV QT F L
Sbjct: 815 ASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVL 874

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           H+  +EEK  +L+ HSE+LA+AYG+LTT  G  +RITKNLR+CGDCH+    IS     E
Sbjct: 875 HNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERE 934

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           +++RD+NRFHHFK G C+C   W
Sbjct: 935 LVMRDANRFHHFKGGVCSCGDVW 957



 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 167/565 (29%), Positives = 300/565 (53%), Gaps = 29/565 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WNA+I   V    P  +  L+ +M   G   D  TFP +LKACG L   R G+ VH
Sbjct: 144 TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVH 203

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +    G+ S VFV N+++ MY +C+ L+ ARQLFD M  P   D+VSWN++++AY+ +G
Sbjct: 204 GLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM--PEKEDVVSWNSMISAYSSNG 261

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            +   L LF  M     +  +  + V AL AC      S   + GM   A  V +     
Sbjct: 262 QSIEALRLFGEMQ-KASLAPNTYTFVAALQACED----SSFIKQGMFIHA-TVLKSSYYI 315

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +V   NA++  Y+R G   +A  +F  M       + ++W+++++G+ Q G  HEAL  +
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDD----WDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+  G +P++V ++S+++  A  G  L G + H Y +K  L        DL V N+L+
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLD------SDLQVGNSLV 425

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAK  S+     +FD +   ++DV +WT +I  ++QNG  + AL LF ++  Q + + 
Sbjct: 426 DMYAKFCSMKYMDCIFDKMP--DKDVVSWTTIIAGHAQNGSHSRALELFREV--QLEGID 481

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            +   +S  L+AC+ L  +   ++IH+Y++R     L+  + N ++D+Y   G++D A  
Sbjct: 482 LDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV--LQNGIVDVYGECGNVDYAAR 539

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F+ ++ ++VVSWTS+++ Y  +GL ++A   F  M++ G+ PD ++ + +L A +    
Sbjct: 540 MFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSA 599

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           + +G +    + ++ G        + +VD+  R   L+++  +   +  +   ++W +++
Sbjct: 600 LKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL-VLWTSMI 657

Query: 639 NGCRIHANVELGELAANRLLELESE 663
           N   +H     G  A +    +E E
Sbjct: 658 NAYGMHG---CGRAAIDLFRRMEDE 679



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 180/380 (47%), Gaps = 47/380 (12%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG + +A+K+F+ M  K + +WNAM+  Y   G    +  L+++MR   + L+  T+  
Sbjct: 126 KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPC 185

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +                                   L  C  +     G E H   IK  
Sbjct: 186 I-----------------------------------LKACGLLKDRRYGAEVHGLAIKE- 209

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                 +   + V N+++ MY KC  ++ AR +FD + P+  DV +W  MI +YS NG +
Sbjct: 210 -----GYVSIVFVANSIVGMYTKCNDLNGARQLFDRM-PEKEDVVSWNSMISAYSSNGQS 263

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL LF +M  Q   + PN +T   AL AC   + ++ G  IHA VL++ Y + + FVA
Sbjct: 264 IEALRLFGEM--QKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV-FVA 320

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LI MY+R G +  A  +F N+   + +SW S+++G+  +GL  +A   + +MR  G  
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 380

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD V  + ++ A + SG    G++   + + + G+ +  +    +VD+  +   +     
Sbjct: 381 PDLVAVISIIAASARSGNTLHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 439

Query: 621 LIEGMPMEPTPIIWVALLNG 640
           + + MP +   + W  ++ G
Sbjct: 440 IFDKMP-DKDVVSWTTIIAG 458



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 13/226 (5%)

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTL----SCALMACARLAALRFGRQIHAYVLRNQ 491
           + G  N+A      +F       P+ F+L    S  L  C    AL  G+Q+HA+++ + 
Sbjct: 52  KRGSVNEAFQSLTDLFANQS---PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSN 108

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
                 F++  L+ MY + G +  A  +FD +  + + +W +++  Y  +G    +   +
Sbjct: 109 ALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY 168

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +MR  G+  D  TF  +L AC        G +      KE G  +       IV +  +
Sbjct: 169 REMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKE-GYVSIVFVANSIVGMYTK 227

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALL-----NGCRIHANVELGEL 652
            N L+ A +L + MP +   + W +++     NG  I A    GE+
Sbjct: 228 CNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEM 273


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  553 bits (1426), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 310/839 (36%), Positives = 476/839 (56%), Gaps = 95/839 (11%)

Query: 34  TPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQ 91
            P   I++L+   C++LTQV  +H Q  V  +    V  + LI  Y  + A   A  L  
Sbjct: 80  NPKFYISALV--NCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD 137

Query: 92  ----RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
               R S S      W+ ++    ++    N F  F +++R G  PD YT PFV++AC +
Sbjct: 138 GMCVRDSVS------WSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 191

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           L + +                      AL+ MY +C  +  AR LFD+M +    D+V+W
Sbjct: 192 LKNLQM---------------------ALVDMYVKCREIEDARFLFDKMQER---DLVTW 227

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
             ++  YA+ G A   L+LF +M  +  V  D V++V  + ACA LG          M +
Sbjct: 228 TVMIGGYAECGKANESLVLFEKMREE-GVVPDKVAMVTVVFACAKLGA---------MHK 277

Query: 268 AKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           A+ + + ++ K    DV+   AM+  Y++ G  E A  +F +M ++NV    ++WSA+IA
Sbjct: 278 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV----ISWSAMIA 333

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
            Y   G G +ALD+FR M   G+ P+ +TL SLL  C +   L   ++ H        SV
Sbjct: 334 AYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQA-----SV 388

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ------- 436
            G    +L+V N L+  Y+  +++D A  +FD +    RD  +W+VM+G +++       
Sbjct: 389 HGM-LQNLIVANKLVHFYSYYRALDDAYGLFDGMCV--RDSVSWSVMVGGFAKVGDYMNC 445

Query: 437 ---------------------NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
                                 G AN++L LF +M ++   V P+   +   + ACA+L 
Sbjct: 446 FGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEG--VVPDKVAMVTVVFACAKLG 503

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           A+   R I  Y+ R ++++ +  +   +IDM+++ G +++AR +FD ++++NV+SW++++
Sbjct: 504 AMHKARTIDDYIQRKKFQLDV-ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 562

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
             YG HG G KA   F  M + G+ P+ +T + LLYACSH+G+V++GL++F  M +++ +
Sbjct: 563 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 622

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
            A  +HY C+VDLLGRA RLDEA++LIE M +E    +W A L  CR H +V L E AA 
Sbjct: 623 RADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAAT 682

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
            LLEL+ +  G Y LLSNIYANAGRW+DVA+ R LM    +KK PG +W++    +  F 
Sbjct: 683 SLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFS 742

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
           VGD THP+S++IYE+L  L  +++ +GYVP T+F LHDVD+E K  +L+ HSEKLA+A+G
Sbjct: 743 VGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFG 802

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++ T   TPIRI KNLR+CGDCH+    +S I    II+RD+NRFHHFKEG+C+C  YW
Sbjct: 803 LIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  553 bits (1426), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 299/797 (37%), Positives = 467/797 (58%), Gaps = 31/797 (3%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           ++LL  C S+ +++ I   +I   L   H+  + L++ +  + + + A  + + I     
Sbjct: 53  AVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLD 112

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +++  + +++   +    + A     +M      P  Y F ++LK CG+    + G  +H
Sbjct: 113 ALY--HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             + ++ F +NVF    ++ MYA+C  +  A ++FD M +    D+VSWNTI+A ++Q+G
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER---DLVSWNTIIAGFSQNG 227

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKV 277
            A+  L L  RM  D   + D ++LV  L A A +G    GK   G    A   F ++  
Sbjct: 228 FAKKALELVLRMQ-DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG--FAKL-- 282

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             V    A+   YS+ GS E A  +F  M Q+ V    V+W++++ GY Q G   +A+ V
Sbjct: 283 --VNISTALADMYSKCGSVETARLIFDGMDQKTV----VSWNSMMDGYVQNGEPEKAIAV 336

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M   G++P  VT++  L  CA +G L  GK  H +  +  L        D+ V+N+L
Sbjct: 337 FEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG------SDISVMNSL 390

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY+KCK VD+A  +F+ +    R   +W  MI  Y+QNG  ++AL  F +M  +   +
Sbjct: 391 ISMYSKCKRVDIASDIFNNL--NGRTHVSWNAMILGYAQNGRVSEALNCFSEM--KSLGM 446

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP++FT+   + A A L+  R  + IH  ++R+  +  I FV   L+DMYS+ G I  AR
Sbjct: 447 KPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNI-FVTTALVDMYSKCGAIHMAR 505

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD +  R+V++W +++ GYG HGLG  A   FD+M+K  + P+ +T+L ++ ACSHSG
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +VD+GL++F SM +++G+    +HY  +VDLLGRA R+ EA + IE MP+ P   ++ A+
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAM 625

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  C+IH N+E+GE AA +L EL  ++ G + LL+NIYA+  +W  VA +R  M+  G+K
Sbjct: 626 LGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K PGCS V+ +    +F+ G  THPQS++IY  L  LV  IKA GYVP T+  L DV+D+
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDD 744

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            +  LL  HSEKLA+A+G+L T+PGT I + KNLR+CGDCH+A  +IS++   EII+RD 
Sbjct: 745 VQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDM 804

Query: 818 NRFHHFKEGSCTCKGYW 834
            RFHHFK G C+C  YW
Sbjct: 805 QRFHHFKNGICSCGDYW 821


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 308/800 (38%), Positives = 466/800 (58%), Gaps = 33/800 (4%)

Query: 41   SLLLRQC---KSLTQVYLIHQQIIVQN---LTHVPPSHLIAAYVSHNAPSPALSLLQRIS 94
            S +L+ C   K L +  ++H  +I  N   +  V  + L+  YVS  A      +   I 
Sbjct: 455  SSILQLCAEHKCLQEGKMVHS-VISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHI- 512

Query: 95   PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
             S   VF WN ++    ++     +  LF +M + G   + YTF  +LK    L      
Sbjct: 513  LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572

Query: 155  SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
              +H  +   GF S   V N+L+A Y +   +  A +LFDE+   G  D+VSWN++++  
Sbjct: 573  KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDEL---GDRDVVSWNSMISGC 629

Query: 215  AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
              +G +   L  F +M   ++V  D  +LVN+++ACA++G+ S G+     +  K  F R
Sbjct: 630  VMNGFSHSALEFFVQML-ILRVGVDLATLVNSVAACANVGSLSLGRAL-HGQGVKACFSR 687

Query: 275  MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
                +V+  N ++  YS+ G+  DA   F+KM Q+ V    V+W+++IA Y + G   +A
Sbjct: 688  ----EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV----VSWTSLIAAYVREGLYDDA 739

Query: 335  LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
            + +F +M+  G+ P+V ++ S+L  CA   +L  G++ H Y  K  +++       L V 
Sbjct: 740  IRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALC------LPVS 793

Query: 395  NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            NAL+DMYAKC S++ A ++F  I  K  D+ +W  MIG YS+N   N+AL LF +M ++ 
Sbjct: 794  NALMDMYAKCGSMEEAYLVFSQIPVK--DIVSWNTMIGGYSKNSLPNEALKLFAEMQKES 851

Query: 455  KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
            +   P+  T++C L AC  LAAL  GR IH  +LRN Y   +  VAN LIDMY + G + 
Sbjct: 852  R---PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL-HVANALIDMYVKCGSLV 907

Query: 515  TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
             AR++FD + ++++++WT +++G GMHGLG++A   F +MR  G+ PD +TF  +LYACS
Sbjct: 908  HARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS 967

Query: 575  HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            HSG++++G  +F+SM  E  +  + EHYAC+VDLL R   L +A  LIE MP++P   IW
Sbjct: 968  HSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIW 1027

Query: 635  VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             ALL GCRIH +VEL E  A  + ELE +  G Y LL+NIYA A +W++V ++R  +   
Sbjct: 1028 GALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKR 1087

Query: 695  GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
            G+KK PGCSW++ +    TF   D  HPQ++ I+ +L  L  ++K  G+ P+  +AL + 
Sbjct: 1088 GLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINA 1147

Query: 755  DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
             D EK   L  HSEKLA+A+GIL    G  IR+ KNLR+C DCH    F+S     EIIL
Sbjct: 1148 GDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIIL 1207

Query: 815  RDSNRFHHFKEGSCTCKGYW 834
            RDSNRFHHFK+G C+C+ +W
Sbjct: 1208 RDSNRFHHFKDGFCSCRDFW 1227



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/512 (28%), Positives = 259/512 (50%), Gaps = 26/512 (5%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D   +  +L+ C E    + G  VH+VI S+G      +   L+ MY  C  L   R++F
Sbjct: 450 DLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIF 509

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D +       +  WN +++ YA+ GD    + LF +M   + + G+  +    L   A+L
Sbjct: 510 DHILSDN--KVFLWNLMMSEYAKIGDYRESIYLFKKMQ-KLGITGNSYTFSCILKCFATL 566

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
           G   R  +C  +              VV  N+++  Y + G  + A  LF ++       
Sbjct: 567 G---RVGECKRIHGCVYKLGFGSYNTVV--NSLIATYFKSGEVDSAHKLFDELGDR---- 617

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           +VV+W+++I+G    G  H AL+ F QM    +  ++ TLV+ ++ CA+VG+L LG+  H
Sbjct: 618 DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALH 677

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K   S       ++M  N L+DMY+KC +++ A   F+ +  K   V +WT +I +
Sbjct: 678 GQGVKACFS------REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT--VVSWTSLIAA 729

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y + G  +DA+ LF +M  + K V P+ ++++  L ACA   +L  GR +H Y+ +N   
Sbjct: 730 YVREGLYDDAIRLFYEM--ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMA 787

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           + +P V+N L+DMY++ G ++ A +VF  +  +++VSW +++ GY  + L ++A   F +
Sbjct: 788 LCLP-VSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M+KE   PDG+T   LL AC     ++ G      + +  G S+       ++D+  +  
Sbjct: 847 MQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCG 904

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            L  A  L + +P E   I W  +++GC +H 
Sbjct: 905 SLVHARLLFDMIP-EKDLITWTVMISGCGMHG 935


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/734 (39%), Positives = 437/734 (59%), Gaps = 23/734 (3%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            +WN L+    +      +  LF +MM  G   D YTF  V K+   L S   G  +H  
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 220

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I  SGF     V N+L+A Y +   +  AR++FDEM +    D++SWN+I+  Y  +G A
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER---DVISWNSIINGYVSNGLA 277

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E GL +F +M     ++ D  ++V+  + CA     S G+    +   K  F R   +D 
Sbjct: 278 EKGLSVFVQMLVS-GIEIDLATIVSVFAGCADSRLISLGRAVHSIG-VKACFSR---EDR 332

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              N ++  YS+ G  + A A+F++M   +V    V+++++IAGYA+ G   EA+ +F +
Sbjct: 333 FC-NTLLDMYSKCGDLDSAKAVFREMSDRSV----VSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G+ P+V T+ ++L+ CA    L  GK  H +  +  L  D      + V NAL+DM
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD------IFVSNALMDM 441

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC S+  A ++F  +  K  D+ +W  +IG YS+N  AN+AL+LF  +  ++K   P+
Sbjct: 442 YAKCGSMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFSPD 498

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T++C L ACA L+A   GR+IH Y++RN Y      VAN L+DMY++ G +  A ++F
Sbjct: 499 ERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLF 557

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D++  +++VSWT ++ GYGMHG G +A   F+QMR+ G+  D ++F+ LLYACSHSG+VD
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G ++F+ M  E  I    EHYACIVD+L R   L +A   IE MP+ P   IW ALL G
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH +V+L E  A ++ ELE E  G Y L++NIYA A +W+ V R+R  +   G++K P
Sbjct: 678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++ K     F  GD ++P+++ I   L  +  R+   GY P T +AL D ++ EK 
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           + L  HSEKLA+A GI+++  G  IR+TKNLR+CGDCH    F+S +   EI+LRDSNRF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857

Query: 821 HHFKEGSCTCKGYW 834
           H FK+G C+C+G+W
Sbjct: 858 HQFKDGHCSCRGFW 871



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 167/638 (26%), Positives = 301/638 (47%), Gaps = 36/638 (5%)

Query: 62  VQNLTHVPPSHLIAAYVSHNAPS--PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNA 119
           +QN   +     +  YV  N  S       +  I+    SV   N  +RR       +NA
Sbjct: 21  LQNQKEIRSGVRVRKYVIFNRASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENA 80

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            +L    +   W  D  T   VL+ C +  S + G  V   I  +GF  +  + + L  M
Sbjct: 81  VKLLC--VSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLM 138

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y  C  L  A ++FDE+    I   + WN ++   A+SGD  G + LF +M     V+ D
Sbjct: 139 YTNCGDLKEASRVFDEV---KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS-GVEMD 194

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
             +      + +SL +   G+Q           ER  V      N++V  Y +    + A
Sbjct: 195 SYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-----NSLVAFYLKNQRVDSA 249

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +F +M + +V    ++W+++I GY   G   + L VF QM   G+E ++ T+VS+ +G
Sbjct: 250 RKVFDEMTERDV----ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 305

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA    + LG+  H   +K   S +          N L+DMY+KC  +D A+ +F  ++ 
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDR------FCNTLLDMYSKCGDLDSAKAVFREMS- 358

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
            +R V ++T MI  Y++ G A +A+ LF +M  +++ + P+ +T++  L  CAR   L  
Sbjct: 359 -DRSVVSYTSMIAGYAREGLAGEAVKLFEEM--EEEGISPDVYTVTAVLNCCARYRLLDE 415

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+++H ++  N     I FV+N L+DMY++ G +  A +VF  ++ ++++SW +++ GY 
Sbjct: 416 GKRVHEWIKENDLGFDI-FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query: 540 MHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
            +   ++A   F+ + +E   +PD  T   +L AC+     D+G +    + +    S R
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 599 AEHYA-CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             H A  +VD+  +   L  A  L + +  +   + W  ++ G  +H   +      N++
Sbjct: 535 --HVANSLVDMYAKCGALLLAHMLFDDIASKDL-VSWTVMIAGYGMHGFGKEAIALFNQM 591

Query: 658 LELESEKDGSYTLLSNIYA--NAGRWKDVARIRSLMKH 693
            +   E D   + +S +YA  ++G   +  R  ++M+H
Sbjct: 592 RQAGIEAD-EISFVSLLYACSHSGLVDEGWRFFNIMRH 628



 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 138/299 (46%), Gaps = 30/299 (10%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S  SV  + ++I    R  L   A +LF +M   G  PD YT   VL  C        G 
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 417

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH  I  +    ++FV NALM MYA+C ++  A  +F EM    + DI+SWNTI+  Y+
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM---RVKDIISWNTIIGGYS 474

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------- 261
           ++  A   L LF  +  + +   D  ++   L ACASL  + +G++              
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       CG +  A  +F+ +  KD+VSW  M+ GY   G  ++A ALF +MRQ 
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALL 367
            ++ + +++ +++   +  G   E    F  M+  C +EP V     ++   A  G L+
Sbjct: 595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLI 653


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 298/797 (37%), Positives = 465/797 (58%), Gaps = 31/797 (3%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           ++LL  C S+ +++ I   +I   L   H+  + L++ +  + + + A  + + I     
Sbjct: 53  AVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLD 112

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +++  + +++   +    + A     +M      P  Y F ++LK CG+    + G  +H
Sbjct: 113 ALY--HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             + ++ F +NVF    ++ MYA+C  +  A ++FD M +    D+VSWNTI+A ++Q+G
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER---DLVSWNTIIAGFSQNG 227

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKV 277
            A+  L L  RM  D   + D ++LV  L A A +G    GK   G    A   F ++  
Sbjct: 228 FAKKALELVLRMQ-DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG--FAKL-- 282

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             V    A+   YS+ GS E A  +F  M Q+ V    V+W++++ GY Q G   +A+ V
Sbjct: 283 --VNISTALADMYSKCGSVETARLIFDGMDQKTV----VSWNSMMDGYVQNGEPEKAIAV 336

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M   G++P  VT++  L  CA +G L  GK  H +  +  L        D+ V+N+L
Sbjct: 337 FEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG------SDISVMNSL 390

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY+KCK VD+A  +F+ +    R   +W  MI  Y+QNG  ++AL  F +M  +   +
Sbjct: 391 ISMYSKCKRVDIASDIFNNL--NGRTHVSWNAMILGYAQNGRVSEALNCFSEM--KSLGM 446

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP++FT+   + A A L+  R  + IH  ++R+  +  I FV   L+DMYS+ G I  AR
Sbjct: 447 KPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNI-FVTTALVDMYSKCGAIHMAR 505

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD +  R+V++W +++ GYG HGLG  A   FD+M+K  + P+ +T+L ++ ACSHSG
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +VD+GL++F SM +++G+    +HY  +VDLLGRA R+ EA + IE MP+ P   ++ A 
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAX 625

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
              C+IH N+E+GE AA +L EL  ++ G + LL+NIYA+  +W  VA +R  M+  G+K
Sbjct: 626 XGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K PGCS V+ +    +F+ G  THPQS++IY  L  LV  IKA GYVP T+  L DV+D+
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDD 744

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            +  LL  HSEKLA+A+G+L T+PGT I + KNLR+CGDCH+A  +IS++   EII+RD 
Sbjct: 745 VQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDM 804

Query: 818 NRFHHFKEGSCTCKGYW 834
            RFHHFK G C+C  YW
Sbjct: 805 QRFHHFKNGICSCGDYW 821


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/734 (39%), Positives = 437/734 (59%), Gaps = 23/734 (3%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            +WN L+    +      +  LF +MM  G   D YTF  V K+   L S   G  +H  
Sbjct: 10  LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 69

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I  SGF     V N+L+A Y +   +  AR++FDEM +    D++SWN+I+  Y  +G A
Sbjct: 70  ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER---DVISWNSIINGYVSNGLA 126

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E GL +F +M     ++ D  ++V+  + CA     S G+    +   K  F R   +D 
Sbjct: 127 EKGLSVFVQMLVS-GIEIDLATIVSVFAGCADSRLISLGRAVHSIG-VKACFSR---EDR 181

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              N ++  YS+ G  + A A+F++M   +V    V+++++IAGYA+ G   EA+ +F +
Sbjct: 182 FC-NTLLDMYSKCGDLDSAKAVFREMSDRSV----VSYTSMIAGYAREGLAGEAVKLFEE 236

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G+ P+V T+ ++L+ CA    L  GK  H +  +  L  D      + V NAL+DM
Sbjct: 237 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD------IFVSNALMDM 290

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC S+  A ++F  +  K  D+ +W  +IG YS+N  AN+AL+LF  +  ++K   P+
Sbjct: 291 YAKCGSMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFSPD 347

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T++C L ACA L+A   GR+IH Y++RN Y      VAN L+DMY++ G +  A ++F
Sbjct: 348 ERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLF 406

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D++  +++VSWT ++ GYGMHG G +A   F+QMR+ G+  D ++F+ LLYACSHSG+VD
Sbjct: 407 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 466

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G ++F+ M  E  I    EHYACIVD+L R   L +A   IE MP+ P   IW ALL G
Sbjct: 467 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 526

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH +V+L E  A ++ ELE E  G Y L++NIYA A +W+ V R+R  +   G++K P
Sbjct: 527 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 586

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++ K     F  GD ++P+++ I   L  +  R+   GY P T +AL D ++ EK 
Sbjct: 587 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 646

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           + L  HSEKLA+A GI+++  G  IR+TKNLR+CGDCH    F+S +   EI+LRDSNRF
Sbjct: 647 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 706

Query: 821 HHFKEGSCTCKGYW 834
           H FK+G C+C+G+W
Sbjct: 707 HQFKDGHCSCRGFW 720



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 236/531 (44%), Gaps = 91/531 (17%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+A Y+ +     A  +   ++     V  WN++I   V   L +    +F+QM+  G  
Sbjct: 85  LVAFYLKNQRVDSARKVFDEMTER--DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D  T   V   C +      G +VH++   + F      CN L+ MY++C  L  A+ +
Sbjct: 143 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 202

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F EM       +VS+ +++A YA+ G A   + LF  M  +  +  D  ++   L+ CA 
Sbjct: 203 FREMSDR---SVVSYTSMIAGYAREGLAGEAVKLFEEMEEE-GISPDVYTVTAVLNCCAR 258

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
                 GK                          +CG M+EA+ VF  M+VKD++SWN +
Sbjct: 259 YRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTI 318

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + GYS+     +A +LF  + +E                                     
Sbjct: 319 IGGYSKNCYANEALSLFNLLLEEKR----------------------------------F 344

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            P+  T+  +L  CAS+ A   G+E H Y ++        +  D  V N+L+DMYAKC +
Sbjct: 345 SPDERTVACVLPACASLSAFDKGREIHGYIMR------NGYFSDRHVANSLVDMYAKCGA 398

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           + +A ++FD IA K  D+ +WTVMI  Y  +G   +A+ALF QM Q    ++ +  +   
Sbjct: 399 LLLAHMLFDDIASK--DLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG--IEADEISFVS 454

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK 524
            L AC+    +  G +    ++R++ + + P V +  C++DM +R+GD+  A    +N+ 
Sbjct: 455 LLYACSHSGLVDEGWRFFN-IMRHECK-IEPTVEHYACIVDMLARTGDLIKAYRFIENMP 512

Query: 525 -QRNVVSWTSLMTGYGMH---GLGDK-AHWAFDQMRKEGLAPDGVTFLVLL 570
              +   W +L+ G  +H    L +K A   F+      L P+   + VL+
Sbjct: 513 IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE------LEPENTGYYVLM 557



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 171/369 (46%), Gaps = 48/369 (13%)

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+ +K++  + WN ++   ++ G F  +  LFKKM    V+++  T+S V   +      
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSF------ 54

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
                                        +S+ ++  G++ H + +K       S     
Sbjct: 55  -----------------------------SSLRSVHGGEQLHGFILKSGFGERNS----- 80

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V N+L+  Y K + VD AR +FD +    RDV +W  +I  Y  NG A   L++F QM 
Sbjct: 81  -VGNSLVAFYLKNQRVDSARKVFDEMTE--RDVISWNSIINGYVSNGLAEKGLSVFVQML 137

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
                ++ +  T+      CA    +  GR +H+  ++  +     F  N L+DMYS+ G
Sbjct: 138 VSG--IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF-CNTLLDMYSKCG 194

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           D+D+A+ VF  +  R+VVS+TS++ GY   GL  +A   F++M +EG++PD  T   +L 
Sbjct: 195 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 254

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
            C+   ++D+G +  + + KE  +         ++D+  +   + EA  +   M ++   
Sbjct: 255 CCARYRLLDEGKRVHEWI-KENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI- 312

Query: 632 IIWVALLNG 640
           I W  ++ G
Sbjct: 313 ISWNTIIGG 321


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 295/732 (40%), Positives = 416/732 (56%), Gaps = 24/732 (3%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WNA+I    R      A +L+ QM   G  P   TF  +L AC    +   G  +H  I 
Sbjct: 454  WNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL 513

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             SG  SN  + NALM MY RC ++  A+ +F+        DI+SWN+++A +AQ G  E 
Sbjct: 514  RSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR---DIISWNSMIAGHAQHGSYEA 570

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
               LF  M  +  ++ D ++  + L  C +      G+Q  M+     + E     DV  
Sbjct: 571  AYKLFLEMKKE-GLEPDKITFASVLVGCKNPEALELGRQIHML-----IIESGLQLDVNL 624

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             NA++  Y R GS +DA+ +F  +R  NV    ++W+A+I G+A +G   +A ++F QMQ
Sbjct: 625  GNALINMYIRCGSLQDAYEVFHSLRHRNV----MSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              G +P   T  S+L  C S   L  GK+     I  +L  +  +  D  V NALI  Y+
Sbjct: 681  NDGFKPVKSTFSSILKACMSSACLDEGKKV----IAHIL--NSGYELDTGVGNALISAYS 734

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            K  S+  AR +FD +   NRD+ +W  MI  Y+QNG    AL    QM  Q++ V  N F
Sbjct: 735  KSGSMTDARKVFDKMP--NRDIMSWNKMIAGYAQNGLGGTALQFAYQM--QEQGVVLNKF 790

Query: 463  TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            +    L AC+  +AL  G+++HA +++ + +  +  V   LI MY++ G ++ A+ VFDN
Sbjct: 791  SFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVR-VGAALISMYAKCGSLEEAQEVFDN 849

Query: 523  LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
              ++NVV+W +++  Y  HGL  KA   F+ M KEG+ PDG TF  +L AC+HSG+V +G
Sbjct: 850  FTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEG 909

Query: 583  LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             + F S+  + G+S   EHY C+V LLGRA R  EA  LI  MP  P   +W  LL  CR
Sbjct: 910  NRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACR 969

Query: 643  IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            IH NV L E AAN  L+L +     Y LLSN+YA AGRW DVA+IR +M+  G++K PG 
Sbjct: 970  IHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGR 1029

Query: 703  SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
            SW++       F   DR+HP++ +IYE L  L   ++  GY P T + LH++D E +   
Sbjct: 1030 SWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETS 1089

Query: 763  LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
            L  HSE+LA+AYG+L T PGTPIRI KNLRICGDCH+A  FIS ++  EII RDSNRFH 
Sbjct: 1090 LCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHT 1149

Query: 823  FKEGSCTCKGYW 834
            FK G C+C+ +W
Sbjct: 1150 FKNGKCSCEDFW 1161



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 171/632 (27%), Positives = 294/632 (46%), Gaps = 91/632 (14%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPP-----SHLIAAYVSHNAPSPALSLLQRIS 94
           L++ C   +SL +   IH Q++      V P     + LI  YV   + S A  +  ++ 
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAG---VGPDIFLSNLLINMYVKCRSVSDAHQVFLKMP 144

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
                V  WN+LI    +      AF+LF +M   G+ P + T+  +L AC        G
Sbjct: 145 RR--DVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYG 202

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +H+ I  +G+  +  V N+L+ MY +C+ L  ARQ+F  +++    D+VS+NT++  Y
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRR---DVVSYNTMLGLY 259

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
           AQ    E  + LF +M+ +  +  D V+ +N L A  +      GK              
Sbjct: 260 AQKAYVEECIGLFGQMSSE-GIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       +CG +  AK+  E    +DVV +NA++   ++ G +E+AF  + +MR 
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS 378

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           + V +N  T+                                   +S+L+ C++  AL  
Sbjct: 379 DGVVMNRTTY-----------------------------------LSVLNACSTSKALGA 403

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G+  H + I  V      H  D+ + N+LI MYA+C  +  AR +F+ + PK RD+ +W 
Sbjct: 404 GELIHSH-ISEV-----GHSSDVQIGNSLISMYARCGDLPRARELFNTM-PK-RDLISWN 455

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I  Y++     +A+ L+ QM  Q + VKP   T    L AC   +A   G+ IH  +L
Sbjct: 456 AIIAGYARREDRGEAMKLYKQM--QSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL 513

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           R+  +     +AN L++MY R G I  A+ VF+  + R+++SW S++ G+  HG  + A+
Sbjct: 514 RSGIKS-NGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAY 572

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F +M+KEGL PD +TF  +L  C +   ++ G +    +  E G+         ++++
Sbjct: 573 KLFLEMKKEGLEPDKITFASVLVGCKNPEALELG-RQIHMLIIESGLQLDVNLGNALINM 631

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
             R   L +A E+   +      + W A++ G
Sbjct: 632 YIRCGSLQDAYEVFHSLRHRNV-MSWTAMIGG 662



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 251/510 (49%), Gaps = 31/510 (6%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +  +G   ++F+ N L+ MY +C ++S A Q+F +M +    D++SWN++++ YAQ
Sbjct: 104 IHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRR---DVISWNSLISCYAQ 160

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G  +    LF  M     +    ++ ++ L+AC S      GK+        K+ E   
Sbjct: 161 QGFKKKAFQLFEEMQTAGFIPSK-ITYISILTACCSPAELEYGKKI-----HSKIIEAGY 214

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            +D    N+++  Y +      A  +F  +     + +VV+++ ++  YAQ+ +  E + 
Sbjct: 215 QRDPRVQNSLLNMYGKCEDLPSARQVFSGI----YRRDVVSYNTMLGLYAQKAYVEECIG 270

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F QM   G+ P+ VT ++LL    +   L  GK  H       L+V+     D+ V  A
Sbjct: 271 LFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH------KLAVNEGLNSDIRVGTA 324

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L  M+ +C  V  A+   +A A  +RDV  +  +I + +Q+G   +A   + QM + D +
Sbjct: 325 LATMFVRCGDVAGAKQALEAFA--DRDVVVYNALIAALAQHGHYEEAFEQYYQM-RSDGV 381

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V  N  T    L AC+   AL  G  IH+++    +   +  + N LI MY+R GD+  A
Sbjct: 382 VM-NRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQ-IGNSLISMYARCGDLPRA 439

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +F+ + +R+++SW +++ GY       +A   + QM+ EG+ P  VTFL LL AC++S
Sbjct: 440 RELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
                G    + + +  GI +       ++++  R   + EA  + EG       I W +
Sbjct: 500 SAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDI-ISWNS 557

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDG 666
           ++ G   H + E    AA +L  LE +K+G
Sbjct: 558 MIAGHAQHGSYE----AAYKLF-LEMKKEG 582


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 310/813 (38%), Positives = 473/813 (58%), Gaps = 40/813 (4%)

Query: 29  FSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQII---VQNLTHVPPSHLIAAYVSHNA 82
           F   T PC+      L+ C  +  ++    IH  II     ++  V  S L++ Y   N 
Sbjct: 8   FDSFTFPCV------LKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANS-LVSMYAKCND 60

Query: 83  PSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVL 142
              A  L  R++     V  WN++I           A  LF +M + G   + YT    L
Sbjct: 61  ILGARKLFDRMNERN-DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAAL 119

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
           +AC +    + G  +HA I  S    +V+V NAL+AM+ R   +SYA ++FDE+ +    
Sbjct: 120 QACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEK--- 176

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D ++WN+++A + Q+G     L  F  +  D  ++ D VSL++ L+A   LG    GK+ 
Sbjct: 177 DNITWNSMIAGFTQNGLYNEALQFFCGLQ-DANLKPDEVSLISILAASGRLGYLLNGKEI 235

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                   +   +++      N ++  YS+      A  +F KM    +  ++++W+ VI
Sbjct: 236 HAYAMKNWLDSNLRIG-----NTLIDMYSKCCCVAYAGLVFDKM----INKDLISWTTVI 286

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A YAQ     EAL + R++Q  G++ + + + S L  C+ +  L   KE H YT+KR LS
Sbjct: 287 AAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS 346

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  DLM+ N +ID+YA C +++ A  MF++I  K +DV +WT MI  Y  NG AN+
Sbjct: 347 -------DLMMQNMIIDVYADCGNINYATRMFESI--KCKDVVSWTSMISCYVHNGLANE 397

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           AL +F  M  ++  V+P++ TL   L A A L+AL  G++IH ++ R  + ML     N 
Sbjct: 398 ALGVFYLM--KETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGF-MLEGSTVNS 454

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+DMY+  G ++ A  VF   + +++V WT+++  YGMHG G  A   F  M  + L PD
Sbjct: 455 LVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPD 514

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TFL LLYACSHSG++++G +  ++M  ++ +    EHYAC+VDLLGRAN L+EA   +
Sbjct: 515 HITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFV 574

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + M +EPT  +W A L  CRIH+N +LGE+AA +LL+L+ +  GSY L+SN++A +GRWK
Sbjct: 575 KSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWK 634

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI-KAM 741
           DV  +R  MK  G+KK PGCSW++      TF V D++HP+S KIY+ LA + +++ K  
Sbjct: 635 DVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEG 694

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GYVPQT   LH+V  EEK  +L+ HSE+LA+AYG+++T+ GTPIRITKNLR+C DCH+  
Sbjct: 695 GYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFC 754

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             +S     E+I+RD++RFHHF++G C+C  +W
Sbjct: 755 KLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 299/762 (39%), Positives = 441/762 (57%), Gaps = 26/762 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  YV   + + A  L  + S    SV  WN +I       L   AF LF  M + G  
Sbjct: 85  LLKLYVHCGSVNEARRLFDKFSNK--SVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE 142

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD++TF  +L AC    +   G  VH  +  +G  +N  V NAL++MYA+C ++  AR++
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRV 202

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD M      D VSW T+  AYA+SG A+  L  +  M  +  V+   ++ +N LSAC S
Sbjct: 203 FDAMASR---DEVSWTTLTGAYAESGYAQESLKTYHAMLQE-GVRPSRITYMNVLSACGS 258

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L    +GKQ        ++ E     DV    A+   Y + G+ +DA  +F+ +   +V 
Sbjct: 259 LAALEKGKQI-----HAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV- 312

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              + W+ +I G    G   EA  +F +M    + P+ VT +++LS CA  G L  GKE 
Sbjct: 313 ---IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEI 369

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H   +K  L        D+   NALI+MY+K  S+  AR +FD + PK RDV +WT ++G
Sbjct: 370 HARAVKDGLV------SDVRFGNALINMYSKAGSMKDARQVFDRM-PK-RDVVSWTALVG 421

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+  G   ++ + F +M QQ   V+ N  T  C L AC+   AL++G++IHA V++   
Sbjct: 422 GYADCGQVVESFSTFKKMLQQG--VEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGI 479

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
              +  VAN L+ MY + G ++ A  V + +  R+VV+W +L+ G   +G G +A   F+
Sbjct: 480 FADLA-VANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFE 538

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M+ E + P+  TF+ ++ AC    +V++G + F SM K++GI    +HYAC+VD+L RA
Sbjct: 539 VMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARA 598

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L EA ++I  MP +P+  +W ALL  CR H NVE+GE AA + L+LE +  G+Y  LS
Sbjct: 599 GHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLS 658

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
            IYA AG W+DVA++R LMK  GVKK PG SW++      +F  GD++HP++++IY  L 
Sbjct: 659 FIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELE 718

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L ++IK++GYVP T F +HD+D E K   +  HSEKLA+AYG+++T P TPIR++KNLR
Sbjct: 719 ALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLR 778

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +C DCH+A  FIS I   EII RD++RFHHFK G C+C  YW
Sbjct: 779 VCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 170/589 (28%), Positives = 287/589 (48%), Gaps = 59/589 (10%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           + ++G   D Y +  +L++C +      G  VH  I   G   NV++ N L+ +Y  C +
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           ++ AR+LFD+        +VSWN +++ YA  G  +    LF  M  +  ++ D  + V+
Sbjct: 95  VNEARRLFDKFSNK---SVVSWNVMISGYAHRGLGQEAFNLFTLMQQE-GLEPDKFTFVS 150

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            LSAC+S    + G++  +     +V E     +    NA+++ Y++ GS  DA  +F  
Sbjct: 151 ILSACSSPAALNWGREVHV-----RVMEAGLANNATVGNALISMYAKCGSVRDARRVFDA 205

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M       + V+W+ +   YA+ G+  E+L  +  M   G+ P+ +T +++LS C S+ A
Sbjct: 206 MASR----DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAA 261

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK+ H         V+  H  D+ V  AL  MY KC +V  AR +F+ +   NRDV 
Sbjct: 262 LEKGKQIHAQI------VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP--NRDVI 313

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  MIG    +G   +A  +F +M ++   V P+  T    L ACAR   L  G++IHA
Sbjct: 314 AWNTMIGGLVDSGQLEEAHGMFHRMLKE--CVAPDRVTYLAILSACARPGGLACGKEIHA 371

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
             +++     + F  N LI+MYS++G +  AR VFD + +R+VVSWT+L+ GY   G   
Sbjct: 372 RAVKDGLVSDVRF-GNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVV 430

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACS-----------HSGMVDQGL----------- 583
           ++   F +M ++G+  + +T++ +L ACS           H+ +V  G+           
Sbjct: 431 ESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALM 490

Query: 584 -KYF------DSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM---PMEPTPI 632
             YF      D++    G+S R    +  ++  L +  R  EA++  E M    M P   
Sbjct: 491 SMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNAT 550

Query: 633 IWVALLNGCRIHANVELG--ELAANRLLELESEKDGSYTLLSNIYANAG 679
            +V +++ CR+   VE G  + A+ R        +  Y  + +I A AG
Sbjct: 551 TFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAG 599



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 186/409 (45%), Gaps = 60/409 (14%)

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           DV + +   G + +    V LL  C     L +GK+ H + ++      G  P+ + +IN
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRF-----GMKPN-VYIIN 83

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            L+ +Y  C SV+ AR +FD  +  N+ V +W VMI  Y+  G   +A  LF  M QQ+ 
Sbjct: 84  TLLKLYVHCGSVNEARRLFDKFS--NKSVVSWNVMISGYAHRGLGQEAFNLFTLM-QQEG 140

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           L +P+ FT    L AC+  AAL +GR++H  V+          V N LI MY++ G +  
Sbjct: 141 L-EPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT-VGNALISMYAKCGSVRD 198

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR VFD +  R+ VSWT+L   Y   G   ++   +  M +EG+ P  +T++ +L AC  
Sbjct: 199 ARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGS 258

Query: 576 SGMVDQG---------------LKYFDSMSKEF----GISARAEHYACI----------- 605
              +++G               ++   +++K +     +    E + C+           
Sbjct: 259 LAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTM 318

Query: 606 VDLLGRANRLDEAVELIEGMPME---PTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           +  L  + +L+EA  +   M  E   P  + ++A+L+ C        G LA  + +   +
Sbjct: 319 IGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSAC-----ARPGGLACGKEIHARA 373

Query: 663 EKDGSYT------LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
            KDG  +       L N+Y+ AG  KD  ++   M      KR   SW 
Sbjct: 374 VKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRM-----PKRDVVSWT 417


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 308/798 (38%), Positives = 452/798 (56%), Gaps = 33/798 (4%)

Query: 43  LLRQC---KSLTQVYLIHQQII---VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           LL+ C   K L     +H+ I+   V+   ++  + L+  Y    + + A  L  + S  
Sbjct: 34  LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNT-LLKLYAHCGSVNEARQLFDKFSNK 92

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
             SV  WN +I       L   AF LF  M +    PD++TF  +L AC        G  
Sbjct: 93  --SVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  +  +G  ++  V NAL++MYA+C ++  AR++FD M      D VSW T+  AYA+
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASR---DEVSWTTLTGAYAE 207

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           SG  E  L  +  M  + +V+   ++ +N LSAC SL    +GKQ         + E   
Sbjct: 208 SGYGEESLKTYHAMLQE-RVRPSRITYMNVLSACGSLAALEKGKQI-----HAHIVESEY 261

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV    A+   Y + G+F+DA  +F+ +   +V    + W+ +I G+   G   EA  
Sbjct: 262 HSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDV----IAWNTMIRGFVDSGQLEEAHG 317

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F +M   G+ P+  T  ++LS CA  G L  GKE H    K  L        D+   NA
Sbjct: 318 TFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV------SDVRFGNA 371

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI+MY+K  S+  AR +FD + PK RDV +WT ++G Y+      ++   F QM QQ   
Sbjct: 372 LINMYSKAGSMKDARQVFDRM-PK-RDVVSWTTLLGRYADCDQVVESFTTFKQMLQQG-- 427

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           VK N  T  C L AC+   AL++G++IHA V++      +  V N L+ MY + G ++ A
Sbjct: 428 VKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLA-VTNALMSMYFKCGSVEDA 486

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF+ +  R+VV+W +L+ G G +G G +A   ++ M+ EG+ P+  TF+ +L AC   
Sbjct: 487 IRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVC 546

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
            +V++G + F  MSK++GI    +HYAC+VD+L RA  L EA ++I  +P++P+  +W A
Sbjct: 547 NLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGA 606

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CRIH NVE+GE AA   L+LE +  G Y  LS IYA AG W+DVA++R  MK  GV
Sbjct: 607 LLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGV 666

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG SW++      +F   D++HP++Q+IY  L  L +++K++GYVP T F +HD+DD
Sbjct: 667 KKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDD 726

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K   +  HSEKLA+AYG+++T PGTPIRI+KNLR+C DCH+A  FIS I   EII RD
Sbjct: 727 EGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARD 786

Query: 817 SNRFHHFKEGSCTCKGYW 834
           ++RFHHFK G C+C  YW
Sbjct: 787 AHRFHHFKNGECSCGDYW 804



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/515 (29%), Positives = 263/515 (51%), Gaps = 26/515 (5%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           + R+G   D Y +  +L++C +      G  VH  I   G   NV++ N L+ +YA C +
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           ++ ARQLFD+        +VSWN +++ YA  G A+    LF  M  + +++ D  + V+
Sbjct: 79  VNEARQLFDKFSNK---SVVSWNVMISGYAHRGLAQEAFNLFTLMQQE-RLEPDKFTFVS 134

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            LSAC+S    + G++  +     +V E     D    NA+++ Y++ GS  DA  +F  
Sbjct: 135 ILSACSSPAVLNWGREIHV-----RVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDA 189

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M       + V+W+ +   YA+ G+G E+L  +  M    + P+ +T +++LS C S+ A
Sbjct: 190 MASR----DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAA 245

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK+ H +       V+  +  D+ V  AL  MY KC +   AR +F+ ++   RDV 
Sbjct: 246 LEKGKQIHAHI------VESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS--YRDVI 297

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  MI  +  +G   +A   F +M ++   V P+  T +  L ACAR   L  G++IHA
Sbjct: 298 AWNTMIRGFVDSGQLEEAHGTFHRMLEEG--VAPDRATYTTVLSACARPGGLARGKEIHA 355

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
              ++     + F  N LI+MYS++G +  AR VFD + +R+VVSWT+L+  Y       
Sbjct: 356 RAAKDGLVSDVRF-GNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVV 414

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           ++   F QM ++G+  + +T++ +L ACS+   +  G +    + K  G+ A       +
Sbjct: 415 ESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GLLADLAVTNAL 473

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           + +  +   +++A+ + EGM M    + W  L+ G
Sbjct: 474 MSMYFKCGSVEDAIRVFEGMSMRDV-VTWNTLIGG 507


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 306/798 (38%), Positives = 465/798 (58%), Gaps = 31/798 (3%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +++LL  C SL +++ I   II       H+  + LI+ +   N+ + A  + + +    
Sbjct: 47  SAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVE-HK 105

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
             V +   L   A    L D A R + +M      P  Y F ++L+  GE    R G  +
Sbjct: 106 LDVLYHTMLKGYAKNSTLRD-AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREI 164

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H ++ ++GF SN+F   A++ +YA+C  +  A ++F+ M Q    D+VSWNT+VA YAQ+
Sbjct: 165 HGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR---DLVSWNTVVAGYAQN 221

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMK 276
           G A   + +  +M  +   + D ++LV+ L A A L     G+   G    A   FE M 
Sbjct: 222 GFARRAVQVVLQMQ-EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAG--FEYM- 277

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
              V    AM+  Y + GS   A  +FK M   NV    V+W+ +I GYAQ G   EA  
Sbjct: 278 ---VNVATAMLDTYFKCGSVRSARLVFKGMSSRNV----VSWNTMIDGYAQNGESEEAFA 330

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F +M   G+EP  V+++  L  CA++G L  G+  H    ++ +  D S      V+N+
Sbjct: 331 TFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVS------VMNS 384

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI MY+KCK VD+A  +F  +  K++ V TW  MI  Y+QNG  N+AL LF +M   D  
Sbjct: 385 LISMYSKCKRVDIAASVFGNL--KHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD-- 440

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP++FTL   + A A L+  R  + IH   +R   +  + FV   LID +++ G I TA
Sbjct: 441 IKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNV-FVCTALIDTHAKCGAIQTA 499

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +FD +++R+V++W +++ GYG +G G +A   F++M+   + P+ +TFL ++ ACSHS
Sbjct: 500 RKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHS 559

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++G+ YF+SM + +G+    +HY  +VDLLGRA RLD+A + I+ MP++P   +  A
Sbjct: 560 GLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGA 619

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           +L  CRIH NVELGE  A+ L +L+ +  G + LL+N+YA+A  W  VAR+R+ M+  G+
Sbjct: 620 MLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGI 679

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           +K PGCS V+ +    TF+ G   HPQS++IY  L  L   +KA GYVP T+ ++HDV++
Sbjct: 680 QKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTN-SIHDVEE 738

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           + K  LL  HSE+LA+A+G+L T  GT I I KNLR+CGDCH A  +IS++   EII+RD
Sbjct: 739 DVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRD 798

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHFK G C+C  YW
Sbjct: 799 LRRFHHFKNGICSCGDYW 816


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/702 (41%), Positives = 428/702 (60%), Gaps = 34/702 (4%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           F  +L+ C  L S   G  VHA I  SG   N ++ N L++MYA+C +L+ AR++FD   
Sbjct: 99  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD--- 155

Query: 198 QPGICD--IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACAS 252
             GI D  IVSW  ++ A+            +  M    K+ G   D V+ V+ L+A  +
Sbjct: 156 --GIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETM----KLAGCKPDKVTFVSLLNAFTN 209

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                 G++   ME AK   E     +     ++V  Y++ G    A  +F K+ ++NV 
Sbjct: 210 PELLQVGQKV-HMEIAKAGLEL----EPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNV- 263

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              VTW+ +IAGYAQ+G    AL++  +MQ   + PN +T  S+L GC +  AL  GK+ 
Sbjct: 264 ---VTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKV 320

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H Y I+        +  ++ V+NALI MY KC  +  AR +F  +   +RDV TWT M+ 
Sbjct: 321 HRYIIQ------SGYGREIWVVNALITMYCKCGGLKEARKLFGDLP--HRDVVTWTAMVT 372

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+Q G  ++A+ LF +M QQ   +KP+  T + AL +C+  A L+ G+ IH  ++   Y
Sbjct: 373 GYAQLGFHDEAIDLFRRMQQQG--IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGY 430

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
            + + ++ + L+ MY++ G +D AR+VF+ + +RNVV+WT+++TG   HG   +A   F+
Sbjct: 431 SLDV-YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE 489

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           QM+K+G+ PD VTF  +L AC+H G+V++G K+F SM  ++GI    EHY+C VDLLGRA
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRA 549

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L+EA  +I  MP +P P +W ALL+ CRIH++VE GE AA  +L+L+ + DG+Y  LS
Sbjct: 550 GHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALS 609

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIYA AGR++D  ++R +M+   V K PG SW++       F V D++HP++++IY  L 
Sbjct: 610 NIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELG 669

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L ++IK  GYVP T F LHDVD+E+K   L  HSE+LA+ YG++ T PGTPIRI KNLR
Sbjct: 670 KLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLR 729

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +CGDCH+A  FIS ++  EII RD++RFHHF +G C+C  +W
Sbjct: 730 VCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/554 (26%), Positives = 253/554 (45%), Gaps = 89/554 (16%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI--SPSP 97
           LL++C   +SL Q   +H  I+   +   P  +L    +S  A   +L+  +R+      
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQ--PNRYLENTLLSMYAKCGSLTDARRVFDGIRD 159

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  W A+I   V       A++ +  M   G  PD+ TF  +L A       + G  V
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  I  +G +    V  +L+ MYA+C  +S A+ +FD++ +    ++V+W  ++A YAQ 
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEK---NVVTWTLLIAGYAQQ 276

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------- 260
           G  +  L L  +M    +V  + ++  + L  C +      GK                 
Sbjct: 277 GQVDVALELLEKMQ-QAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV 335

Query: 261 ---------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                    +CG ++EA+K+F  +  +DVV+W AMVTGY+++G  ++A  LF++M+Q+  
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQ-- 393

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
                                            G++P+ +T  S L+ C+S   L  GK 
Sbjct: 394 ---------------------------------GIKPDKMTFTSALTSCSSPAFLQEGKS 420

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   +    S+      D+ + +AL+ MYAKC S+D AR++F+ ++ +N  V  WT MI
Sbjct: 421 IHQQLVHAGYSL------DVYLQSALVSMYAKCGSMDDARLVFNQMSERN--VVAWTAMI 472

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
              +Q+G   +AL  F QM +Q   +KP+  T +  L AC  +  +  GR+ H   +   
Sbjct: 473 TGCAQHGRCREALEYFEQMKKQG--IKPDKVTFTSVLSACTHVGLVEEGRK-HFRSMYLD 529

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAH 548
           Y  + P V +  C +D+  R+G ++ A  V   +  Q     W +L++   +H   ++  
Sbjct: 530 YG-IKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGE 588

Query: 549 WAFDQMRKEGLAPD 562
            A + + K  L PD
Sbjct: 589 RAAENVLK--LDPD 600



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 17/331 (5%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K++ +  S  ++   ++G   EAL +   M   G          LL  CA + +L  G+E
Sbjct: 58  KVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE 117

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   +K      G  P+  +  N L+ MYAKC S+  AR +FD I  ++R++ +WT MI
Sbjct: 118 VHAAILK-----SGIQPNRYLE-NTLLSMYAKCGSLTDARRVFDGI--RDRNIVSWTAMI 169

Query: 432 GSYSQNGGANDALALFPQMFQQDKLV--KPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
            ++       +A   +  M    KL   KP+  T    L A      L+ G+++H  + +
Sbjct: 170 EAFVAGNQNLEAYKCYETM----KLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAK 225

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
              E L P V   L+ MY++ GDI  A+V+FD L ++NVV+WT L+ GY   G  D A  
Sbjct: 226 AGLE-LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALE 284

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
             ++M++  +AP+ +T+  +L  C+    ++ G K    + +  G          ++ + 
Sbjct: 285 LLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQS-GYGREIWVVNALITMY 343

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +   L EA +L   +P     + W A++ G
Sbjct: 344 CKCGGLKEARKLFGDLPHRDV-VTWTAMVTG 373


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/736 (39%), Positives = 440/736 (59%), Gaps = 24/736 (3%)

Query: 99   SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
            SV  W  +I         + AF +F +M + G  P+  T+  VL A     + + G +VH
Sbjct: 309  SVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVH 368

Query: 159  AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            + I ++G +S++ V  AL+ MYA+C +    RQ+F+++      D+++WNT++   A+ G
Sbjct: 369  SHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR---DLIAWNTMIGGLAEGG 425

Query: 219  DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            + E    ++ +M  +  +  + ++ V  L+AC +      G+     E   +V +   + 
Sbjct: 426  NWEEASEIYHQMQRE-GMMPNKITYVILLNACVNPTALHWGR-----EIHSRVVKDGFMF 479

Query: 279  DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            D+   NA+++ Y+R GS +DA  LF KM    V+ ++++W+A+I G A+ G G EAL VF
Sbjct: 480  DISVQNALISMYARCGSIKDARLLFNKM----VRKDIISWTAMIGGLAKSGLGAEALAVF 535

Query: 339  RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            + MQ  GL+PN VT  S+L+ C+S  AL  G+  H   I+  L+ D        V N L+
Sbjct: 536  QDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH------VANTLV 589

Query: 399  DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            +MY+ C SV  AR +FD +    RD+  +  MIG Y+ +    +AL LF ++  Q++ +K
Sbjct: 590  NMYSMCGSVKDARQVFDRMT--QRDIVAYNAMIGGYAAHNLGKEALKLFDRL--QEEGLK 645

Query: 459  PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            P+  T    L ACA   +L + ++IH+ VL++ Y +    + N L+  Y++ G    A +
Sbjct: 646  PDKVTYINMLNACANSGSLEWAKEIHSLVLKDGY-LSDTSLGNALVSTYAKCGSFSDALL 704

Query: 519  VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            VFD + +RNV+SW +++ G   HG G      F++M+ EG+ PD VTF+ LL ACSH+G+
Sbjct: 705  VFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGL 764

Query: 579  VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            +++G +YF SMS++FGI+   EHY C+VDLLGRA +LDE   LI+ MP +    IW ALL
Sbjct: 765  LEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALL 824

Query: 639  NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              CRIH NV + E AA   L+L+ +    Y  LS++YA AG W   A++R LM+  GV K
Sbjct: 825  GACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 884

Query: 699  RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             PG SW++  +    F   DR+HP+S+KIY  L  L   +K  GYVP T   +HDVD+ E
Sbjct: 885  EPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGE 944

Query: 759  KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
            K + +  HSE+LA+AYG+++T PGTPIRI KNLR+C DCH+A  FI+ I++ EI+ RD N
Sbjct: 945  KENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVN 1004

Query: 819  RFHHFKEGSCTCKGYW 834
            RFHHFK+G C+C  YW
Sbjct: 1005 RFHHFKDGVCSCGDYW 1020



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 185/610 (30%), Positives = 315/610 (51%), Gaps = 35/610 (5%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQN--LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +L++C   K L     +H+ II     L     + LI  Y+   +   A  +  +++ + 
Sbjct: 147 MLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTE 206

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V  WNA++   V+    + A +L  +M + G      T   +L +C    +  CG  +
Sbjct: 207 RTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREI 266

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H     +    +V V N ++ MYA+C ++  AR++FD+M       +VSW  I+  YA  
Sbjct: 267 HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS---VVSWTIIIGGYADC 323

Query: 218 GDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           G +E    +F +M   G V  +   ++++NA S  A+L  W +     ++    +     
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL-KWGKTVHSHILNAGHE----- 377

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              D+    A+V  Y++ GS++D   +F+K+    V  +++ W+ +I G A+ G+  EA 
Sbjct: 378 --SDLAVGTALVKMYAKCGSYKDCRQVFEKL----VNRDLIAWNTMIGGLAEGGNWEEAS 431

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           +++ QMQ  G+ PN +T V LL+ C +  AL  G+E H   +K     DG    D+ V N
Sbjct: 432 EIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK-----DG-FMFDISVQN 485

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           ALI MYA+C S+  AR++F+ +  K  D+ +WT MIG  +++G   +ALA+F  M  Q  
Sbjct: 486 ALISMYARCGSIKDARLLFNKMVRK--DIISWTAMIGGLAKSGLGAEALAVFQDM--QQA 541

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            +KPN  T +  L AC+  AAL +GR+IH  V+          VAN L++MYS  G +  
Sbjct: 542 GLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLAT-DAHVANTLVNMYSMCGSVKD 600

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR VFD + QR++V++ +++ GY  H LG +A   FD++++EGL PD VT++ +L AC++
Sbjct: 601 ARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 660

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           SG ++   K   S+  + G  +       +V    +     +A+ + + M M+   I W 
Sbjct: 661 SGSLEWA-KEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWN 718

Query: 636 ALLNGCRIHA 645
           A++ GC  H 
Sbjct: 719 AIIGGCAQHG 728



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 169/614 (27%), Positives = 279/614 (45%), Gaps = 93/614 (15%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           D A  +   + ++G   +   +  +LK C E+     G  VH  I       + +  NAL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MY +C ++  ARQ+++++       + SWN +V  Y Q G  E  L L   M      
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERT-VHSWNAMVVGYVQYGYIEEALKLLREM------ 235

Query: 237 QGDGVSLVNA-----LSACASLGTWSRGKQ--------------------------CGMM 265
           Q  G++L  A     LS+C S      G++                          CG +
Sbjct: 236 QQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSI 295

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
            EA++VF++M+ K VVSW  ++ GY+  G  E AF +F+KM+QE                
Sbjct: 296 HEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQE---------------- 339

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
                              G+ PN +T +++L+  +   AL  GK  H + +      + 
Sbjct: 340 -------------------GVVPNRITYINVLNAFSGPAALKWGKTVHSHIL------NA 374

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
            H  DL V  AL+ MYAKC S    R +F+ +   NRD+  W  MIG  ++ G   +A  
Sbjct: 375 GHESDLAVGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLAEGGNWEEASE 432

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           ++ QM  Q + + PN  T    L AC    AL +GR+IH+ V+++ + M    V N LI 
Sbjct: 433 IYHQM--QREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF-MFDISVQNALIS 489

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY+R G I  AR++F+ + +++++SWT+++ G    GLG +A   F  M++ GL P+ VT
Sbjct: 490 MYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVT 549

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           +  +L ACS    +D G +    +  E G++  A     +V++      + +A ++ + M
Sbjct: 550 YTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE----KDGSYTLLSNIYANAGRW 681
                 + + A++ G   H    LG+ A      L+ E       +Y  + N  AN+G  
Sbjct: 609 TQRDI-VAYNAMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 664

Query: 682 KDVARIRSLMKHTG 695
           +    I SL+   G
Sbjct: 665 EWAKEIHSLVLKDG 678


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/732 (39%), Positives = 430/732 (58%), Gaps = 25/732 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W ++I    R      A  LF +M   G  PD+  F  +L+AC    +   G  VHA + 
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D+ ++V  A+++MY +C ++  A ++FD +      ++VSW  ++A +AQ G  + 
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR---NVVSWTAMIAGFAQHGRIDE 396

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             + F +M  +  ++ + V+ ++ L AC+S     RG+Q         + E     D   
Sbjct: 397 AFLFFNKMI-ESGIEPNRVTFMSILGACSSPSALKRGQQI-----QDHIIEAGYGSDDRV 450

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             A+++ Y++ GS +DA  +F+K+ ++NV    V W+A+I  Y Q      AL  F+ + 
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNV----VAWNAMITAYVQHEQYDNALATFQALL 506

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G++PN  T  S+L+ C S  +L LGK  H   +K  L        DL V NAL+ M+ 
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE------SDLHVSNALVSMFV 560

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            C  +  A+ +F+ + PK RD+ +W  +I  + Q+G    A   F  M  Q+  +KP+  
Sbjct: 561 NCGDLMSAKNLFNDM-PK-RDLVSWNTIIAGFVQHGKNQVAFDYFKMM--QESGIKPDKI 616

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L ACA   AL  GR++HA +    ++  +  V   LI MY++ G I+ A  VF  
Sbjct: 617 TFTGLLNACASPEALTEGRRLHALITEAAFDCDV-LVGTGLISMYTKCGSIEDAHQVFHK 675

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L ++NV SWTS++TGY  HG G +A   F QM++EG+ PD +TF+  L AC+H+G++++G
Sbjct: 676 LPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG 735

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F SM KEF I  R EHY C+VDL GRA  L+EAVE I  M +EP   +W ALL  C+
Sbjct: 736 LHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQ 794

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H NVEL E AA + LEL+   +G + +LSNIYA AG WK+VA++R +M   GV K+PG 
Sbjct: 795 VHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQ 854

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++      TF+  D+THPQ+++I+  L  L   ++ +GYVP T + LHDV+D EK   
Sbjct: 855 SWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQA 914

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           LF HSE+LA+ YG+L T P TPI I+KNLR+CGDCH+A  FIS I   +II RDSNRFHH
Sbjct: 915 LFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHH 974

Query: 823 FKEGSCTCKGYW 834
           FK+G C+C  +W
Sbjct: 975 FKDGVCSCGDFW 986



 Score =  252 bits (644), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 165/571 (28%), Positives = 294/571 (51%), Gaps = 43/571 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V+ WN L+   V+  L + AF+L  QM++    PD+ TF  +L AC +  +   G  ++ 
Sbjct: 176 VYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN 235

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +I  +G+D+++FV  AL+ M+ +C  +  A ++FD +      D+V+W +++   A+ G 
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL---PTRDLVTWTSMITGLARHGR 292

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +    LF RM  +  VQ D V+ V+ L AC              +E+ KKV  RMK   
Sbjct: 293 FKQACNLFQRMEEE-GVQPDKVAFVSLLRAC---------NHPEALEQGKKVHARMK--- 339

Query: 280 VVSWN-------AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
            V W+       A+++ Y++ GS EDA  +F  ++  N    VV+W+A+IAG+AQ G   
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN----VVSWTAMIAGFAQHGRID 395

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EA   F +M   G+EPN VT +S+L  C+S  AL  G++   + I      +  +  D  
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII------EAGYGSDDR 449

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  AL+ MYAKC S+  A  +F+ I+ +N  V  W  MI +Y Q+   ++ALA F  + +
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQN--VVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           +   +KPN+ T +  L  C    +L  G+ +H  +++   E  +  V+N L+ M+   GD
Sbjct: 508 EG--IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDL-HVSNALVSMFVNCGD 564

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           + +A+ +F+++ +R++VSW +++ G+  HG    A   F  M++ G+ PD +TF  LL A
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNA 624

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+    + +G +   ++  E            ++ +  +   +++A ++   +P +    
Sbjct: 625 CASPEALTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVY 682

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESE 663
            W +++ G   H     G+ A     +++ E
Sbjct: 683 SWTSMITGYAQHGR---GKEALELFYQMQQE 710



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 198/412 (48%), Gaps = 49/412 (11%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG    AK++F+ M+ KDV SWN ++ GY + G +E+AF L ++M Q++VK        
Sbjct: 157 KCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK-------- 208

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
                                      P+  T VS+L+ CA    +  G+E +   +K  
Sbjct: 209 ---------------------------PDKRTFVSMLNACADARNVDKGRELYNLILK-- 239

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                    DL V  ALI+M+ KC  +  A  +FD +    RD+ TWT MI   +++G  
Sbjct: 240 ----AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP--TRDLVTWTSMITGLARHGRF 293

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A  LF +M  +++ V+P+       L AC    AL  G+++HA +    ++  I +V 
Sbjct: 294 KQACNLFQRM--EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEI-YVG 350

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             ++ MY++ G ++ A  VFD +K RNVVSWT+++ G+  HG  D+A   F++M + G+ 
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           P+ VTF+ +L ACS    + +G +  D +  E G  +       ++ +  +   L +A  
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
           + E +  +   + W A++     H   +   LA  + L  E  K  S T  S
Sbjct: 470 VFEKISKQNV-VAWNAMITAYVQHEQYD-NALATFQALLKEGIKPNSSTFTS 519



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 204/446 (45%), Gaps = 80/446 (17%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I    +    D AF  F +M+  G  P+  TF  +L AC    + + G  + 
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +G+ S+  V  AL++MYA+C +L  A ++F+++ +    ++V+WN ++ AY Q  
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ---NVVAWNAMITAYVQHE 493

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS-----LGTW----------------- 256
             +  L  F  +  +  ++ +  +  + L+ C S     LG W                 
Sbjct: 494 QYDNALATFQALLKE-GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVS 552

Query: 257 ----SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
               S    CG +  AK +F  M  +D+VSWN ++ G+ + G  + AF  FK M++    
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES--- 609

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                           G++P+ +T   LL+ CAS  AL  G+  
Sbjct: 610 --------------------------------GIKPDKITFTGLLNACASPEALTEGRRL 637

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H       L  + +   D++V   LI MY KC S++ A  +F  +  KN  V +WT MI 
Sbjct: 638 H------ALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN--VYSWTSMIT 689

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+Q+G   +AL LF QM Q+   VKP+  T   AL ACA    +  G  +H +    ++
Sbjct: 690 GYAQHGRGKEALELFYQMQQEG--VKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEF 745

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTA 516
             + P + +  C++D++ R+G ++ A
Sbjct: 746 N-IEPRMEHYGCMVDLFGRAGLLNEA 770



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 176/341 (51%), Gaps = 13/341 (3%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +AV+   ++ G  +EA+ V  ++    ++    T  +LL  C     L  G+  + +  K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                 G  PD  M  N LI+MYAKC +   A+ +FD +  + +DV +W +++G Y Q+G
Sbjct: 139 -----SGVQPDIFM-WNTLINMYAKCGNTISAKQIFDDM--REKDVYSWNLLLGGYVQHG 190

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +A  L  QM Q    VKP+  T    L ACA    +  GR+++  +L+  ++  + F
Sbjct: 191 LYEEAFKLHEQMVQDS--VKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL-F 247

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V   LI+M+ + GDI  A  VFDNL  R++V+WTS++TG   HG   +A   F +M +EG
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + PD V F+ LL AC+H   ++QG K    M KE G          I+ +  +   +++A
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           +E+ + +      + W A++ G   H  ++   L  N+++E
Sbjct: 367 LEVFD-LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 153/304 (50%), Gaps = 32/304 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y    +   A  + ++IS    +V  WNA+I   V+    DNA   F  +++ G  
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQ--NVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF  +L  C    S   G  VH +I  +G +S++ V NAL++M+  C  L  A+ L
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F++M +    D+VSWNTI+A + Q G  +     F +M  +  ++ D ++    L+ACAS
Sbjct: 572 FNDMPKR---DLVSWNTIIAGFVQHGKNQVAFDYF-KMMQESGIKPDKITFTGLLNACAS 627

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
               + G+                          +CG +E+A +VF ++  K+V SW +M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           +TGY++ G  ++A  LF +M+QE VK + +T+   ++  A  G   E L  F+ M+   +
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNI 747

Query: 347 EPNV 350
           EP +
Sbjct: 748 EPRM 751


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/721 (40%), Positives = 440/721 (61%), Gaps = 31/721 (4%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           D+A   F +M      P  Y F ++LK CG+    + G  +H  + +SGF  N+F    +
Sbjct: 12  DSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGV 71

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MYA+C  ++ A  +FD M +    D+V WNT+++ YAQ+G A+  LML  RM+ +   
Sbjct: 72  VNMYAKCRQINDAYNMFDRMPER---DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGH- 127

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEA---KKVFERMKVKDVVSWNAMVTGYSRI 293
           + D +++V+ L A A     +R  + GM       +  FE +    V    A+V  YS+ 
Sbjct: 128 RPDSITIVSILPAVAD----TRLLRIGMAVHGYVLRAGFESL----VNVSTALVDMYSKC 179

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           GS   A  +F  M    V    V+W+++I GY Q G    A+ +F++M   G++P  VT+
Sbjct: 180 GSVSIARVIFDGMDHRTV----VSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           +  L  CA +G L  GK  H   +   L +D     D+ V+N+LI MY+KCK VD+A  +
Sbjct: 236 MGALHACADLGDLERGKFVH--KLVDQLKLDS----DVSVMNSLISMYSKCKRVDIAADI 289

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F  +  +N+ + +W  MI  Y+QNG  N+AL  F +M  Q + +KP++FT+   + A A 
Sbjct: 290 FKNL--RNKTLVSWNAMILGYAQNGCVNEALNAFCEM--QSRNIKPDSFTMVSVIPALAE 345

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L+  R  + IH  V+R   +  + FV   L+DMY++ G I TAR +FD +  R+V++W +
Sbjct: 346 LSIPRQAKWIHGLVIRRFLDKNV-FVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNA 404

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ GYG HGLG  +   F +M+K  + P+ +TFL  L ACSHSG+V++GL +F+SM K++
Sbjct: 405 MIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDY 464

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    +HY  +VDLLGRA RL++A + I+ MP++P   ++ A+L  C+IH NV+LGE A
Sbjct: 465 GIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKA 524

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A  + +L  +  G + LL+NIYA A  W  VA++R++M+ +G++K PGCS V+      +
Sbjct: 525 AFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHS 584

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F+ G  +HPQS+KIY  L  LV  I+A GYVP T+ ++HDV+D+ K  LL  HSEKLA+A
Sbjct: 585 FYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTN-SIHDVEDDVKVQLLNTHSEKLAIA 643

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+L T+ GTPI I KNLR+CGDCH+A  +IS++   EII+RD +RFH FK+G C+C  Y
Sbjct: 644 FGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDY 703

Query: 834 W 834
           W
Sbjct: 704 W 704



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +      A  L L+M   G  PD  T   +L A  +    R G +VH  + 
Sbjct: 99  WNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVL 158

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +GF+S V V  AL+ MY++C ++S AR +FD M       +VSWN+++  Y QSGDAEG
Sbjct: 159 RAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHR---TVVSWNSMIDGYVQSGDAEG 215

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV-KDVV 281
            +++F +M  D  VQ   V+++ AL ACA LG   RGK         K+ +++K+  DV 
Sbjct: 216 AMLIFQKML-DEGVQPTNVTVMGALHACADLGDLERGKF------VHKLVDQLKLDSDVS 268

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             N++++ YS+    + A  +FK +R +     +V+W+A+I GYAQ G  +EAL+ F +M
Sbjct: 269 VMNSLISMYSKCKRVDIAADIFKNLRNK----TLVSWNAMILGYAQNGCVNEALNAFCEM 324

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           Q   ++P+  T+VS++   A +      K  H   I+R L        ++ V+ AL+DMY
Sbjct: 325 QSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLD------KNVFVMTALVDMY 378

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC ++  AR +FD +    R V TW  MI  Y  +G    ++ LF +M  +   +KPN 
Sbjct: 379 AKCGAIHTARKLFDMMNA--RHVITWNAMIDGYGTHGLGKTSVELFKEM--KKGTIKPND 434

Query: 462 FTLSCALMACARLAALRFG 480
            T  CAL AC+    +  G
Sbjct: 435 ITFLCALSACSHSGLVEEG 453



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 214/457 (46%), Gaps = 36/457 (7%)

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           ++  YA+S   +  L  F+RM  D  V+    +    L  C       RGK+        
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHD-SVRPVVYNFTYLLKLCGDNSDLKRGKE-------- 51

Query: 270 KVFERMKVKDVVSWN-----AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                  +    SWN      +V  Y++     DA+ +F +M +     ++V W+ +I+G
Sbjct: 52  --IHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER----DLVCWNTMISG 105

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           YAQ G    AL +  +M   G  P+ +T+VS+L   A    L +G   H Y ++      
Sbjct: 106 YAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR------ 159

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                 + V  AL+DMY+KC SV +ARV+FD +   +R V +W  MI  Y Q+G A  A+
Sbjct: 160 AGFESLVNVSTALVDMYSKCGSVSIARVIFDGM--DHRTVVSWNSMIDGYVQSGDAEGAM 217

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            +F +M   D+ V+P   T+  AL ACA L  L  G+ +H  V + + +  +  V N LI
Sbjct: 218 LIFQKML--DEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVS-VMNSLI 274

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            MYS+   +D A  +F NL+ + +VSW +++ GY  +G  ++A  AF +M+   + PD  
Sbjct: 275 SMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSF 334

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           T + ++ A +   +  Q  K+   +     +         +VD+  +   +  A +L + 
Sbjct: 335 TMVSVIPALAELSIPRQA-KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDM 393

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           M      I W A+++G   H    LG+ +     E++
Sbjct: 394 MNARHV-ITWNAMIDGYGTHG---LGKTSVELFKEMK 426



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 129/279 (46%), Gaps = 31/279 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN++I   V+    + A  +F +M+  G  P   T    L AC +L     G  VH
Sbjct: 196 TVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVH 255

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++     DS+V V N+L++MY++C  +  A  +F  +       +VSWN ++  YAQ+G
Sbjct: 256 KLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK---TLVSWNAMILGYAQNG 312

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-----GTWSRG-------------- 259
                L  F  M     ++ D  ++V+ + A A L       W  G              
Sbjct: 313 CVNEALNAFCEMQSR-NIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVM 371

Query: 260 -------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG +  A+K+F+ M  + V++WNAM+ GY   G  + +  LFK+M++  +K
Sbjct: 372 TALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIK 431

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNV 350
            N +T+   ++  +  G   E L  F  M+   G+EP +
Sbjct: 432 PNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTM 470



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 20/210 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    +    + A   F +M  R   PD +T   V+ A  EL   R    +H ++ 
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               D NVFV  AL+ MYA+C  +  AR+LFD M       +++WN ++  Y   G  + 
Sbjct: 361 RRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR---HVITWNAMIDGYGTHGLGKT 417

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD--- 279
            + LF  M     ++ + ++ + ALSAC+           G++EE    FE MK KD   
Sbjct: 418 SVELFKEMKKGT-IKPNDITFLCALSACS---------HSGLVEEGLCFFESMK-KDYGI 466

Query: 280 ---VVSWNAMVTGYSRIGSFEDAFALFKKM 306
              +  + AMV    R G    A+   +KM
Sbjct: 467 EPTMDHYGAMVDLLGRAGRLNQAWDFIQKM 496


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/732 (39%), Positives = 429/732 (58%), Gaps = 25/732 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W ++I    R      A  LF +M   G  PD+  F  +L+AC    +   G  VHA + 
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D+ ++V  A+++MY +C ++  A ++FD +      ++VSW  ++A +AQ G  + 
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR---NVVSWTAMIAGFAQHGRIDE 396

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             + F +M  +  ++ + V+ ++ L AC+S     RG+Q         + E     D   
Sbjct: 397 AFLFFNKMI-ESGIEPNRVTFMSILGACSSPSALKRGQQI-----QDHIIEAGYGSDDRV 450

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             A+++ Y++ GS +DA  +F+K+ ++NV    V W+A+I  Y Q      AL  F+ + 
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNV----VAWNAMITAYVQHEQYDNALATFQALL 506

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G++PN  T  S+L+ C S  +L LGK  H   +K  L        DL V NAL+ M+ 
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE------SDLHVSNALVSMFV 560

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            C  +  A+ +F+ + PK RD+ +W  +I  + Q+G    A   F  M  Q+  +KP+  
Sbjct: 561 NCGDLMSAKNLFNDM-PK-RDLVSWNTIIAGFVQHGKNQVAFDYFKMM--QESGIKPDKI 616

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L ACA   AL  GR++HA +    ++  +  V   LI MY++ G I+ A  VF  
Sbjct: 617 TFTGLLNACASPEALTEGRRLHALITEAAFDCDV-LVGTGLISMYTKCGSIEDAHQVFHK 675

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L ++NV SWTS++ GY  HG G +A   F QM++EG+ PD +TF+  L AC+H+G++++G
Sbjct: 676 LPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG 735

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F SM KEF I  R EHY C+VDL GRA  L+EAVE I  M +EP   +W ALL  C+
Sbjct: 736 LHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQ 794

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H NVEL E AA + LEL+   +G + +LSNIYA AG WK+VA++R +M   GV K+PG 
Sbjct: 795 VHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQ 854

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++      TF+  D+THPQ+++I+  L  L   ++ +GYVP T + LHDV+D EK   
Sbjct: 855 SWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQA 914

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           LF HSE+LA+ YG+L T P TPI I+KNLR+CGDCH+A  FIS I   +II RDSNRFHH
Sbjct: 915 LFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHH 974

Query: 823 FKEGSCTCKGYW 834
           FK+G C+C  +W
Sbjct: 975 FKDGVCSCGDFW 986



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 165/571 (28%), Positives = 294/571 (51%), Gaps = 43/571 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V+ WN L+   V+  L + AF+L  QM++    PD+ TF  +L AC +  +   G  ++ 
Sbjct: 176 VYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN 235

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +I  +G+D+++FV  AL+ M+ +C  +  A ++FD +      D+V+W +++   A+ G 
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL---PTRDLVTWTSMITGLARHGR 292

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +    LF RM  +  VQ D V+ V+ L AC              +E+ KKV  RMK   
Sbjct: 293 FKQACNLFQRMEEE-GVQPDKVAFVSLLRAC---------NHPEALEQGKKVHARMK--- 339

Query: 280 VVSWN-------AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
            V W+       A+++ Y++ GS EDA  +F  ++  N    VV+W+A+IAG+AQ G   
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN----VVSWTAMIAGFAQHGRID 395

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EA   F +M   G+EPN VT +S+L  C+S  AL  G++   + I      +  +  D  
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII------EAGYGSDDR 449

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  AL+ MYAKC S+  A  +F+ I+ +N  V  W  MI +Y Q+   ++ALA F  + +
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQN--VVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           +   +KPN+ T +  L  C    +L  G+ +H  +++   E  +  V+N L+ M+   GD
Sbjct: 508 EG--IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDL-HVSNALVSMFVNCGD 564

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           + +A+ +F+++ +R++VSW +++ G+  HG    A   F  M++ G+ PD +TF  LL A
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNA 624

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+    + +G +   ++  E            ++ +  +   +++A ++   +P +    
Sbjct: 625 CASPEALTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVY 682

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESE 663
            W +++ G   H     G+ A     +++ E
Sbjct: 683 SWTSMIAGYAQHGR---GKEALELFYQMQQE 710



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 204/446 (45%), Gaps = 80/446 (17%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I    +    D AF  F +M+  G  P+  TF  +L AC    + + G  + 
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +G+ S+  V  AL++MYA+C +L  A ++F+++ +    ++V+WN ++ AY Q  
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ---NVVAWNAMITAYVQHE 493

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS-----LGTW----------------- 256
             +  L  F  +  +  ++ +  +  + L+ C S     LG W                 
Sbjct: 494 QYDNALATFQALLKE-GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVS 552

Query: 257 ----SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
               S    CG +  AK +F  M  +D+VSWN ++ G+ + G  + AF  FK M++    
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES--- 609

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                           G++P+ +T   LL+ CAS  AL  G+  
Sbjct: 610 --------------------------------GIKPDKITFTGLLNACASPEALTEGRRL 637

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H       L  + +   D++V   LI MY KC S++ A  +F  +  KN  V +WT MI 
Sbjct: 638 H------ALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN--VYSWTSMIA 689

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+Q+G   +AL LF QM Q+   VKP+  T   AL ACA    +  G  +H +    ++
Sbjct: 690 GYAQHGRGKEALELFYQMQQEG--VKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEF 745

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTA 516
             + P + +  C++D++ R+G ++ A
Sbjct: 746 N-IEPRMEHYGCMVDLFGRAGLLNEA 770



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 198/412 (48%), Gaps = 49/412 (11%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG    AK++F+ M+ KDV SWN ++ GY + G +E+AF L ++M Q++VK        
Sbjct: 157 KCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK-------- 208

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
                                      P+  T VS+L+ CA    +  G+E +   +K  
Sbjct: 209 ---------------------------PDKRTFVSMLNACADARNVDKGRELYNLILK-- 239

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                    DL V  ALI+M+ KC  +  A  +FD +    RD+ TWT MI   +++G  
Sbjct: 240 ----AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP--TRDLVTWTSMITGLARHGRF 293

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A  LF +M  +++ V+P+       L AC    AL  G+++HA +    ++  I +V 
Sbjct: 294 KQACNLFQRM--EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEI-YVG 350

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             ++ MY++ G ++ A  VFD +K RNVVSWT+++ G+  HG  D+A   F++M + G+ 
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           P+ VTF+ +L ACS    + +G +  D +  E G  +       ++ +  +   L +A  
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
           + E +  +   + W A++     H   +   LA  + L  E  K  S T  S
Sbjct: 470 VFEKISKQNV-VAWNAMITAYVQHEQYD-NALATFQALLKEGIKPNSSTFTS 519



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y    +   A  + ++IS    +V  WNA+I   V+    DNA   F  +++ G  
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQ--NVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF  +L  C    S   G  VH +I  +G +S++ V NAL++M+  C  L  A+ L
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F++M +    D+VSWNTI+A + Q G  +     F +M  +  ++ D ++    L+ACAS
Sbjct: 572 FNDMPKR---DLVSWNTIIAGFVQHGKNQVAFDYF-KMMQESGIKPDKITFTGLLNACAS 627

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
               + G++   +     + E     DV+    +++ Y++ GS EDA  +F K+ ++NV 
Sbjct: 628 PEALTEGRRLHAL-----ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV- 681

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
               +W+++IAGYAQ G G EAL++F QMQ  G++P+ +T V  LS CA  G +  G
Sbjct: 682 ---YSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG 735



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 176/341 (51%), Gaps = 13/341 (3%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +AV+   ++ G  +EA+ V  ++    ++    T  +LL  C     L  G+  + +  K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                 G  PD  M  N LI+MYAKC +   A+ +FD +  + +DV +W +++G Y Q+G
Sbjct: 139 -----SGVQPDIFMR-NTLINMYAKCGNTISAKQIFDDM--REKDVYSWNLLLGGYVQHG 190

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +A  L  QM Q    VKP+  T    L ACA    +  GR+++  +L+  ++  + F
Sbjct: 191 LYEEAFKLHEQMVQDS--VKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL-F 247

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V   LI+M+ + GDI  A  VFDNL  R++V+WTS++TG   HG   +A   F +M +EG
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + PD V F+ LL AC+H   ++QG K    M KE G          I+ +  +   +++A
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           +E+ + +      + W A++ G   H  ++   L  N+++E
Sbjct: 367 LEVFD-LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/701 (39%), Positives = 425/701 (60%), Gaps = 31/701 (4%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           F  +L+ C  L S   G  VHA I  SG   N ++ N L++MYA+C +L+ AR++FD + 
Sbjct: 50  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLG 254
                +IVSW  ++ A+            +  M    K+ G   D V+ V+ L+A  +  
Sbjct: 110 DR---NIVSWTAMIEAFVAGNKNLEAFKCYETM----KLAGCKPDKVTFVSLLNAFTNPE 162

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
               G++  M     ++ E     +     ++V  Y++ G    A  +F ++ ++NV   
Sbjct: 163 LLQLGQKVHM-----EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNV--- 214

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            VTW+ +IAGYAQ+G    AL++   MQ   + PN +T  S+L GC +  AL  GK+ H 
Sbjct: 215 -VTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHR 273

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           Y I+        +  +L V+N+LI MY KC  ++ AR +F  +   +RDV TWT M+  Y
Sbjct: 274 YIIQ------SGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP--HRDVVTWTAMVTGY 325

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q G  ++A+ LF +M QQ   +KP+  T +  L +C+  A L+ G++IH  ++   Y +
Sbjct: 326 AQLGFHDEAINLFRRMQQQG--IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL 383

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY-GMHGLGDKAHWAFDQ 553
            + ++ + L+ MY++ G +D A +VF+ + +RNVV+WT+++TG    HG   +A   FDQ
Sbjct: 384 DV-YLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQ 442

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M+K+G+ PD VTF  +L AC+H G+V++G K+F SM  ++GI    EHY+C VDLLGRA 
Sbjct: 443 MKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 502

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            L+EA  +I  MP  P P +W ALL+ CR+H++VE GE AA  +L+L+ + DG+Y  LS+
Sbjct: 503 HLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSS 562

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IYA AGR++D  ++R +M+   V K PG SW++       F V D++HP+S++IY  L  
Sbjct: 563 IYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGK 622

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           L ++IK MGYVP T F LHDVD+E+K  +LF HSE+LA+ YG++ T PG PIRI KNLR+
Sbjct: 623 LTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRV 682

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CGDCH+A  FIS ++  EII RD+ RFHHF +G C+C  +W
Sbjct: 683 CGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 252/555 (45%), Gaps = 90/555 (16%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI--SPSP 97
           LL++C   +SL Q   +H  I+   +   P  +L    +S  A   +L+  +R+  S   
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQ--PNRYLENTLLSMYAKCGSLTDARRVFDSIRD 110

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  W A+I   V       AF+ +  M   G  PD+ TF  +L A       + G  V
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  I  +G +    V  +L+ MYA+C  +S AR +FD + +    ++V+W  ++A YAQ 
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEK---NVVTWTLLIAGYAQQ 227

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------- 260
           G  +  L L   M    +V  + ++  + L  C +      GK                 
Sbjct: 228 GQVDVALELLETMQ-QAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 261 ---------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                    +CG +EEA+K+F  +  +DVV+W AMVTGY+++G  ++A  LF++M+Q+ +
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K                                   P+ +T  S+L+ C+S   L  GK 
Sbjct: 347 K-----------------------------------PDKMTFTSVLTSCSSPAFLQEGKR 371

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H         V   +  D+ + +AL+ MYAKC S+D A ++F+ ++ +N  V  WT +I
Sbjct: 372 IHQQL------VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERN--VVAWTAII 423

Query: 432 -GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
            G  +Q+G   +AL  F QM +Q   +KP+  T +  L AC  +  +  GR+ H   +  
Sbjct: 424 TGCCAQHGRCREALEYFDQMKKQG--IKPDKVTFTSVLSACTHVGLVEEGRK-HFRSMYL 480

Query: 491 QYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKA 547
            Y  + P V +  C +D+  R+G ++ A  V  ++      S W +L++   +H   ++ 
Sbjct: 481 DYG-IKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERG 539

Query: 548 HWAFDQMRKEGLAPD 562
             A + + K  L PD
Sbjct: 540 ERAAENVLK--LDPD 552



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 17/331 (5%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K+  +  S  ++   + G   EAL +   M   G          LL  CA + +L  G+E
Sbjct: 9   KVETLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE 68

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   +K      G  P+  +  N L+ MYAKC S+  AR +FD+I  ++R++ +WT MI
Sbjct: 69  VHAAILK-----SGIQPNRYLE-NTLLSMYAKCGSLTDARRVFDSI--RDRNIVSWTAMI 120

Query: 432 GSYSQNGGANDALALFPQMFQQDKLV--KPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
            ++       +A   +  M    KL   KP+  T    L A      L+ G+++H  ++ 
Sbjct: 121 EAFVAGNKNLEAFKCYETM----KLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVE 176

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
              E L P V   L+ MY++ GDI  ARV+FD L ++NVV+WT L+ GY   G  D A  
Sbjct: 177 AGLE-LEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALE 235

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
             + M++  +AP+ +TF  +L  C+    ++ G K    + +  G          ++ + 
Sbjct: 236 LLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQS-GYGRELWVVNSLITMY 294

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +   L+EA +L   +P     + W A++ G
Sbjct: 295 CKCGGLEEARKLFSDLPHRDV-VTWTAMVTG 324


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 298/823 (36%), Positives = 457/823 (55%), Gaps = 68/823 (8%)

Query: 30  SVTTTPCIKITSL----LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNA 82
           S+ T P   +  L    L++ C    S  +   IH Q+I       P ++L+   +   A
Sbjct: 60  SIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYN--PDAYLMTKILMLYA 117

Query: 83  PSPALS-------LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
            S  L        L + +     +   WN +I    R+     A+ +F +M++ G  PD 
Sbjct: 118 RSGCLDDLCYARKLFEEMPERNLTA--WNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +TF   L+ CG L S   G  VH+ + + GF  + FV NAL+ MYA+CD      ++FDE
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 235

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLG 254
           M   G  + V+WN+I++A AQ G     L+LF RM   +  +Q D  +    L+ CA+  
Sbjct: 236 M---GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQR 292

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
             ++G+Q         +      K+++    +V  YS  G    A  +F +M + N    
Sbjct: 293 NDNQGRQI-----HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA--- 344

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
             +W+++I GY Q G   EAL +F+QMQ  G++P+  +L S+LS C S+     G+E H 
Sbjct: 345 -YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN 403

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           + ++  +  +G     L V+  L+DMYAKC S+D A  ++D    K+R+ A W  ++  Y
Sbjct: 404 FIVRNTMEEEGI----LQVV--LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGY 457

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +  G   ++   F +M + D  ++ +  T+   +                         +
Sbjct: 458 ANKGLKKESFNHFLEMLESD--IEYDVLTMVTIV------------------------NL 491

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           L+  +   L+DMYS+ G I  AR VFDN+  +N+VSW ++++GY  HG   +A   +++M
Sbjct: 492 LV--LETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 549

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
            K+G+ P+ VTFL +L ACSH+G+V++GL+ F SM +++ I A+AEHY C+VDLLGRA R
Sbjct: 550 PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGR 609

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L++A E +E MP+EP    W ALL  CR+H ++++G LAA RL EL+ +  G Y ++SNI
Sbjct: 610 LEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNI 669

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA AGRWK+V  IR +MK  GVKK PG SW++       F  G +THP++++IY  L  L
Sbjct: 670 YAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHL 729

Query: 735 VQRIKAMGYVPQTSFALHDVDD---EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             + K +GY+P TSF L +V D   EE+ + L +HSE+LAL+ G+++    + IR+ KNL
Sbjct: 730 TLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNL 789

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RICGDCH+A  FIS I    II RD+NRFHHF+ G C+C  YW
Sbjct: 790 RICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/737 (39%), Positives = 436/737 (59%), Gaps = 26/737 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNAL    V++     A  LF +M+  G  P+E++   ++ AC  L  S  G  +H
Sbjct: 222 NVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIH 281

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   G+D + F  NAL+ MYA+   L+ A  +F+++ QP   DIVSWN ++A      
Sbjct: 282 GYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP---DIVSWNAVIAGCVLHE 338

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             E  L L  +M     +  +  +L +AL ACA +G    G+Q            +M ++
Sbjct: 339 HHEQALELLGQMKRS-GICPNIFTLSSALKACAGMGLKELGRQL------HSSLMKMDME 391

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+     +V  YS+    EDA   F  + ++++    + W+A+I+GY+Q     EAL +
Sbjct: 392 SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL----IAWNAIISGYSQYWEDMEALSL 447

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M   G+  N  TL ++L   A +  + + ++ H  ++K      G H D + V+N+L
Sbjct: 448 FVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK-----SGFHSD-IYVVNSL 501

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID Y KC  V+ A  +F+       D+ ++T MI +Y+Q G   +AL LF +M  QD  +
Sbjct: 502 IDSYGKCSHVEDAERIFEECTIG--DLVSFTSMITAYAQYGQGEEALKLFLEM--QDMEL 557

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP+ F  S  L ACA L+A   G+Q+H ++L+  + + I F  N L++MY++ G ID A 
Sbjct: 558 KPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI-FAGNSLVNMYAKCGSIDDAG 616

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             F  L +R +VSW++++ G   HG G +A   F+QM KEG++P+ +T + +L AC+H+G
Sbjct: 617 RAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAG 676

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +V +   YF+SM + FG     EHYAC++DLLGRA +++EAVEL+  MP E    +W AL
Sbjct: 677 LVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGAL 736

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L   RIH +VELG  AA  L  LE EK G++ LL+NIYA+AG+W++VA +R LM+ + VK
Sbjct: 737 LGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVK 796

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K PG SW++ K+   TF VGDR+H +SQ+IY  L  L   +   GYVP     LHDV+  
Sbjct: 797 KEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQS 856

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           EK  LL+ HSEKLA+A+G++ T  G PIR+ KNLR+C DCH+A  +I  I++ EII+RD 
Sbjct: 857 EKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDI 916

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHFK+GSC+C  YW
Sbjct: 917 NRFHHFKDGSCSCGDYW 933



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 195/626 (31%), Positives = 307/626 (49%), Gaps = 49/626 (7%)

Query: 34  TPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALS 88
           TP     S LL QC   KSL     IH  I    L+  P   +HLI  Y        A  
Sbjct: 53  TPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARK 112

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL 148
           L+   S  P  +  W+ALI    +  L   A   F +M   G   +E+TF  VLKAC  +
Sbjct: 113 LVDE-SSEP-DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
              R G  VH V+  SGF+ +VFV N L+ MYA+CD    +++LFDE+ +    ++VSWN
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER---NVVSWN 227

Query: 209 TIVAAYAQ---SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
            + + Y Q    G+A G   LF  M     ++ +  SL + ++AC  L   SRG      
Sbjct: 228 ALFSCYVQIDFCGEAVG---LFYEMVLS-GIKPNEFSLSSMVNACTGLRDSSRG------ 277

Query: 266 EEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
               K+     +K     D  S NA+V  Y+++G   DA ++F+K++Q     ++V+W+A
Sbjct: 278 ----KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP----DIVSWNA 329

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           VIAG     H  +AL++  QM+  G+ PN+ TL S L  CA +G   LG++ H   +K  
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD 389

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           +        DL V   L+DMY+KC  ++ AR+ F+ +  K  D+  W  +I  YSQ    
Sbjct: 390 ME------SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK--DLIAWNAIISGYSQYWED 441

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL+LF +M ++   +  N  TLS  L + A L  +   RQ+H   +++ +   I +V 
Sbjct: 442 MEALSLFVEMHKEG--IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI-YVV 498

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LID Y +   ++ A  +F+     ++VS+TS++T Y  +G G++A   F +M+   L 
Sbjct: 499 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 558

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD      LL AC++    +QG +    + K +G          +V++  +   +D+A  
Sbjct: 559 PDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGR 617

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHAN 646
               +  E   + W A++ G   H +
Sbjct: 618 AFSELT-ERGIVSWSAMIGGLAQHGH 642



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 15/302 (4%)

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P  V+   LLS C +  +L  G + H +  K  LS      DD  + N LI++Y+KC++ 
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLS------DDPSIRNHLINLYSKCRNF 107

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
             AR + D       D+ +W+ +I  Y+QNG    AL  F +M      VK N FT S  
Sbjct: 108 GYARKLVD--ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG--VKCNEFTFSSV 163

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L AC+ +  LR G+Q+H  V+ + +E  + FVAN L+ MY++  +   ++ +FD + +RN
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDV-FVANTLVVMYAKCDEFLDSKRLFDEIPERN 222

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL-KYF 586
           VVSW +L + Y       +A   F +M   G+ P+  +   ++ AC  +G+ D    K  
Sbjct: 223 VVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSRGKII 280

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
                + G          +VD+  +   L +A+ + E +  +P  + W A++ GC +H +
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEH 339

Query: 647 VE 648
            E
Sbjct: 340 HE 341


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/732 (39%), Positives = 410/732 (56%), Gaps = 24/732 (3%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WNA+I    R      A RL+ QM   G  P   TF  +L AC    +   G  +H  I 
Sbjct: 399  WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             SG  SN  + NALM MY RC +L  A+ +F+        D++SWN+++A +AQ G  E 
Sbjct: 459  RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR---DVISWNSMIAGHAQHGSYET 515

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
               LF  M  + +++ D ++  + LS C +      GKQ        ++ E     DV  
Sbjct: 516  AYKLFQEMQNE-ELEPDNITFASVLSGCKNPEALELGKQI-----HGRITESGLQLDVNL 569

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             NA++  Y R GS +DA  +F  ++  +V    ++W+A+I G A +G   +A+++F QMQ
Sbjct: 570  GNALINMYIRCGSLQDARNVFHSLQHRDV----MSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              G  P   T  S+L  C S   L  GK+   Y +      +  +  D  V NALI  Y+
Sbjct: 626  NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYIL------NSGYELDTGVGNALISAYS 679

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            K  S+  AR +FD +   +RD+ +W  +I  Y+QNG    A+    QM +QD  V PN F
Sbjct: 680  KSGSMTDAREVFDKMP--SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD--VVPNKF 735

Query: 463  TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            +    L AC+  +AL  G+++HA +++ + +  +  V   LI MY++ G    A+ VFDN
Sbjct: 736  SFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVR-VGAALISMYAKCGSQGEAQEVFDN 794

Query: 523  LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            + ++NVV+W +++  Y  HGL  KA   F+ M KEG+ PDG TF  +L AC+H+G+V +G
Sbjct: 795  IIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEG 854

Query: 583  LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             + F SM  E+G+    EHY C+V LLGRA R  EA  LI  MP  P   +W  LL  CR
Sbjct: 855  YQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACR 914

Query: 643  IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            IH N+ L E AAN  L+L +     Y LLSN+YA AGRW DVA+IR +M+  G++K PG 
Sbjct: 915  IHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGR 974

Query: 703  SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
            SW++       F   DR+HP++ +IY  L  L   ++  GY P T   LHD+    +   
Sbjct: 975  SWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETS 1034

Query: 763  LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
            L  HSE+LA+AYG++ T PGTPIRI KNLRICGDCH+A  FIS ++  EII RDSNRFH 
Sbjct: 1035 LCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHS 1094

Query: 823  FKEGSCTCKGYW 834
            FK G C+C+ YW
Sbjct: 1095 FKNGKCSCEDYW 1106



 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 168/544 (30%), Positives = 271/544 (49%), Gaps = 30/544 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+LI    +      AF+LF +M   G+ P++ T+  +L AC        G  +H+
Sbjct: 93  VISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHS 152

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--DIVSWNTIVAAYAQS 217
            I  +G+  +  V N+L++MY +C  L  ARQ+F      GI   D+VS+NT++  YAQ 
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF-----AGISPRDVVSYNTMLGLYAQK 207

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
              +  L LF +M+ +  +  D V+ +N L A  +      GK+       K   E    
Sbjct: 208 AYVKECLGLFGQMSSE-GISPDKVTYINLLDAFTTPSMLDEGKRI-----HKLTVEEGLN 261

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+    A+VT   R G  + A   FK         +VV ++A+IA  AQ GH  EA + 
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKG----TADRDVVVYNALIAALAQHGHNVEAFEQ 317

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           + +M+  G+  N  T +S+L+ C++  AL  GK  H +     +S DG H  D+ + NAL
Sbjct: 318 YYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH-----ISEDG-HSSDVQIGNAL 371

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MYA+C  +  AR +F  + PK RD+ +W  +I  Y++     +A+ L+ QM  Q + V
Sbjct: 372 ISMYARCGDLPKARELFYTM-PK-RDLISWNAIIAGYARREDRGEAMRLYKQM--QSEGV 427

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP   T    L ACA  +A   G+ IH  +LR+  +     +AN L++MY R G +  A+
Sbjct: 428 KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKS-NGHLANALMNMYRRCGSLMEAQ 486

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VF+  + R+V+SW S++ G+  HG  + A+  F +M+ E L PD +TF  +L  C +  
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            ++ G K       E G+         ++++  R   L +A  +   +      + W A+
Sbjct: 547 ALELG-KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV-MSWTAM 604

Query: 638 LNGC 641
           + GC
Sbjct: 605 IGGC 608



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 153/606 (25%), Positives = 279/606 (46%), Gaps = 66/606 (10%)

Query: 129 RGWHPDEYTFPFVLKACGE---LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           R    +  T+  +L+ C     LP ++    +HA +  +    ++F+ N L+ MY +C +
Sbjct: 21  RPTETERATYVALLQNCTRKRLLPEAK---RIHAQMVEAWVGPDIFLSNLLINMYVKCRS 77

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  A Q+F EM +    D++SWN++++ YAQ G  +    LF  M  +     + ++ ++
Sbjct: 78  VLDAHQVFKEMPRR---DVISWNSLISCYAQQGFKKKAFQLFEEMQ-NAGFIPNKITYIS 133

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            L+AC S      GK+        ++ +    +D    N++++ Y + G    A  +F  
Sbjct: 134 ILTACYSPAELENGKKI-----HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           +   +V    V+++ ++  YAQ+ +  E L +F QM   G+ P+ VT ++LL    +   
Sbjct: 189 ISPRDV----VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK  H  T++  L+       D+ V  AL+ M  +C  VD A+  F   A  +RDV 
Sbjct: 245 LDEGKRIHKLTVEEGLN------SDIRVGTALVTMCVRCGDVDSAKQAFKGTA--DRDVV 296

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            +  +I + +Q+G   +A   + +M  +   V  N  T    L AC+   AL  G+ IH+
Sbjct: 297 VYNALIAALAQHGHNVEAFEQYYRM--RSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           ++  + +   +  + N LI MY+R GD+  AR +F  + +R+++SW +++ GY       
Sbjct: 355 HISEDGHSSDVQ-IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRG 413

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   + QM+ EG+ P  VTFL LL AC++S     G    + + +  GI +       +
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANAL 472

Query: 606 VDLLGRANRLDEAVELIEGM----------------------------------PMEPTP 631
           +++  R   L EA  + EG                                    +EP  
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSY-TLLSNIYANAGRWKDVARIRSL 690
           I + ++L+GC+    +ELG+    R+ E   + D +    L N+Y   G  +D   +   
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 691 MKHTGV 696
           ++H  V
Sbjct: 593 LQHRDV 598


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/763 (38%), Positives = 447/763 (58%), Gaps = 27/763 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+A Y   N  + A  L  R+      V  WN++I       +   A  LF +M++ G  
Sbjct: 99  LVALYAKCNDINGARKLFDRMYVRN-DVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVV 157

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            + YTF   L+AC +    + G  +HA I  SG   +V+V NAL+AMY R   +  A  +
Sbjct: 158 TNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVI 217

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  +      DIV+WN+++  + Q+G     L  F  +  +  ++ D VS+++ + A   
Sbjct: 218 FGNLEGK---DIVTWNSMLTGFIQNGLYSEALEFFYDLQ-NADLKPDQVSIISIIVASGR 273

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           LG    GK+       K  F+     +++  N ++  Y++          F  M  +++ 
Sbjct: 274 LGYLLNGKEIHAYA-IKNGFD----SNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL- 327

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              ++W+   AGYAQ     +AL++ RQ+Q  G++ +   + S+L  C  +  L   KE 
Sbjct: 328 ---ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEI 384

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H YTI+  LS       D ++ N +ID+Y +C  +D A  +F++I  K  DV +WT MI 
Sbjct: 385 HGYTIRGGLS-------DPVLQNTIIDVYGECGIIDYAVRIFESIECK--DVVSWTSMIS 435

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y  NG AN AL +F  M  ++  ++P+  TL   L A   L+ L+ G++IH +++R  +
Sbjct: 436 CYVHNGLANKALEVFSSM--KETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGF 493

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
            +L   ++N L+DMY+R G ++ A  +F   K RN++ WT++++ YGMHG G+ A   F 
Sbjct: 494 -ILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFM 552

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M+ E + PD +TFL LLYACSHSG+V++G  + + M  E+ +    EHY C+VDLLGR 
Sbjct: 553 RMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRR 612

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
           N L+EA ++++ M  EPTP +W ALL  CRIH+N E+GE+AA +LLEL+ +  G+Y L+S
Sbjct: 613 NCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVS 672

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N++A  GRWKDV  +R  MK +G+ K PGCSW++       F   D+ HP+  KIY+ LA
Sbjct: 673 NVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLA 732

Query: 733 GLVQRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
            + +++K   GYV QT F LH+V +EEK  +L+ HSE+LA+AYG+L TA GTPIR+TKNL
Sbjct: 733 QVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNL 792

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+CGDCHS  T +S     E+I+RD++RFHHFK+G C+C  +W
Sbjct: 793 RVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 182/583 (31%), Positives = 297/583 (50%), Gaps = 31/583 (5%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S  S+F WNA++   V       A  ++ +M   G   D YTFP +LKACG +    CG+
Sbjct: 19  SERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGA 78

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +H +    G DS VFV N+L+A+YA+C+ ++ AR+LFD M+     D+VSWN+I++AY+
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRN--DVVSWNSIISAYS 136

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
            +G     L LF+ M     V  +  +   AL AC        G     M+    + +  
Sbjct: 137 GNGMCTEALCLFSEML-KAGVVTNTYTFAAALQACEDSSFIKLG-----MQIHAAILKSG 190

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           +V DV   NA+V  Y R G   +A  +F  +  +    ++VTW++++ G+ Q G   EAL
Sbjct: 191 RVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK----DIVTWNSMLTGFIQNGLYSEAL 246

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           + F  +Q   L+P+ V+++S++     +G LL GKE H Y IK           +++V N
Sbjct: 247 EFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKN------GFDSNILVGN 300

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            LIDMYAKC  +      FD +A K  D+ +WT     Y+QN     AL L  Q+  Q +
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHK--DLISWTTAAAGYAQNKCYLQALELLRQL--QME 356

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            +  +A  +   L+AC  L  L   ++IH Y +R    +  P + N +ID+Y   G ID 
Sbjct: 357 GMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGG--LSDPVLQNTIIDVYGECGIIDY 414

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A  +F++++ ++VVSWTS+++ Y  +GL +KA   F  M++ GL PD VT + +L A   
Sbjct: 415 AVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
              + +G +    + ++ G          +VD+  R   +++A ++          I+W 
Sbjct: 475 LSTLKKGKEIHGFIIRK-GFILEGSISNTLVDMYARCGSVEDAYKIFT-CTKNRNLILWT 532

Query: 636 ALLNGCRIHANVELGELAANRLLELESEK--DGSYTLLSNIYA 676
           A+++   +H     GE A    + ++ EK      T L+ +YA
Sbjct: 533 AMISAYGMHG---YGEAAVELFMRMKDEKIIPDHITFLALLYA 572



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 14/293 (4%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y + GS  DA  +F KM + ++     TW+A++ GY   G    AL+++R+M+  G+  +
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSI----FTWNAMMGGYVSNGEALGALEMYREMRHLGVSFD 57

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             T   LL  C  V  L  G E H   IK            + V+N+L+ +YAKC  ++ 
Sbjct: 58  SYTFPVLLKACGIVEDLFCGAEIHGLAIKY------GCDSFVFVVNSLVALYAKCNDING 111

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +FD +  +N DV +W  +I +YS NG   +AL LF +M +    V  N +T + AL 
Sbjct: 112 ARKLFDRMYVRN-DVVSWNSIISAYSGNGMCTEALCLFSEMLKAG--VVTNTYTFAAALQ 168

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC   + ++ G QIHA +L++   +L  +VAN L+ MY R G +  A V+F NL+ +++V
Sbjct: 169 ACEDSSFIKLGMQIHAAILKSG-RVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIV 227

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +W S++TG+  +GL  +A   F  ++   L PD V+ + ++ A    G +  G
Sbjct: 228 TWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY KC SV  A ++FD ++   R + TW  M+G Y  NG A  AL ++ +M      V  
Sbjct: 1   MYGKCGSVLDAEMIFDKMSE--RSIFTWNAMMGGYVSNGEALGALEMYREMRHLG--VSF 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +++T    L AC  +  L  G +IH   ++   +  + FV N L+ +Y++  DI+ AR +
Sbjct: 57  DSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFV-FVVNSLVALYAKCNDINGARKL 115

Query: 520 FDNLKQRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           FD +  RN VVSW S+++ Y  +G+  +A   F +M K G+  +  TF   L AC  S  
Sbjct: 116 FDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSF 175

Query: 579 VDQGLK 584
           +  G++
Sbjct: 176 IKLGMQ 181



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY + G +  A ++FD + +R++ +W ++M GY  +G    A   + +MR  G++ D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 566 FLVLLYACSHSGMVDQGL--KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           F VLL AC   G+V+          ++ ++G  +       +V L  + N ++ A +L +
Sbjct: 61  FPVLLKAC---GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 624 GMPMEPTPIIWVALLN 639
            M +    + W ++++
Sbjct: 118 RMYVRNDVVSWNSIIS 133


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/706 (41%), Positives = 414/706 (58%), Gaps = 46/706 (6%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARC--DTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +H+ I  +G  +  F  + L+   A      LSYA  LF+ + QP   +   WNT++   
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQP---NQFIWNTMIRGN 107

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------------ 262
           + S    G +  + RM     V+ +  +    L +CA +G    GKQ             
Sbjct: 108 SLSSSPVGAIDFYVRMLL-CGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESD 166

Query: 263 --------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                         G +  A+ VF +  ++D VS+ A++TGY+  G  +DA  LF+++  
Sbjct: 167 PFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPV 226

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +     V+W+A+IAGYAQ G   EAL  F++M+   + PN  T+V++LS CA  G+L L
Sbjct: 227 RDA----VSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLEL 282

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G     +     L        +L ++NALIDMY+KC  +D AR +F+ I  K  D+ +W 
Sbjct: 283 GNWVRSWIEDHGLG------SNLRLVNALIDMYSKCGDLDKARDLFEGICEK--DIISWN 334

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           VMIG YS      +ALALF +M Q +  V+PN  T    L ACA L AL  G+ IHAY+ 
Sbjct: 335 VMIGGYSHMNSYKEALALFRKMQQSN--VEPNDVTFVSILPACAYLGALDLGKWIHAYID 392

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +    +    +   LIDMY++ G+I+ A+ VF  +K +++ SW ++++G  MHG  + A 
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F QMR EG  PD +TF+ +L ACSH+G+V+ G + F SM +++ IS + +HY C++DL
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGRA   DEA  L++ M M+P   IW +LL  CR+H NVELGE AA  L ELE E  G+Y
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LLSNIYA AGRW DVARIR+ +   G+KK PGCS ++       F VGD+ H QSQ IY
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIY 632

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           ++L  + Q ++  G+VP TS  L+D+D+E K   L  HSEKLA+A+G+++T P T IRI 
Sbjct: 633 KMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIV 692

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CG+CHSAI  IS I N EII RD NRFHHFK+GSC+C  YW
Sbjct: 693 KNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 186/618 (30%), Positives = 284/618 (45%), Gaps = 126/618 (20%)

Query: 29  FSVTTTPCIKI-----TSLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIA--AYVS 79
           F  T+ P  K+     +  LL  CKS   +  IH QII   L  T    S LI   A   
Sbjct: 19  FQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISP 78

Query: 80  HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
               S AL L + I     + F WN +IR       P  A   +++M+  G  P+ YTFP
Sbjct: 79  FGNLSYALLLFESIEQP--NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFP 136

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY----------- 188
           F+LK+C ++ +++ G  +H  +   G +S+ FV  +L+ MYA+   L Y           
Sbjct: 137 FLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLR 196

Query: 189 --------------------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
                               AR+LF+E+    + D VSWN ++A YAQSG  E  L  F 
Sbjct: 197 DAVSFTALITGYTLRGCLDDARRLFEEI---PVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 229 RMTGDVKVQGDGVSLVNALSACA-----SLGTWSRG---------------------KQC 262
            M     V  +  ++V  LSACA      LG W R                       +C
Sbjct: 254 EMK-RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC 312

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +++A+ +FE +  KD++SWN M+ GYS + S+++A ALF+KM+Q NV           
Sbjct: 313 GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV----------- 361

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                                   EPN VT VS+L  CA +GAL LGK  H Y  K+ L 
Sbjct: 362 ------------------------EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLG 397

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +  +      +  +LIDMYAKC +++ A+ +F  + PK+  + +W  MI   + +G AN 
Sbjct: 398 LTNTS-----LWTSLIDMYAKCGNIEAAKQVFAGMKPKS--LGSWNAMISGLAMHGHANM 450

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN- 501
           AL LF QM  +D+  +P+  T    L AC+    +  GRQ  + ++ + Y+ + P + + 
Sbjct: 451 ALELFRQM--RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVED-YD-ISPKLQHY 506

Query: 502 -CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHWAFDQMRK 556
            C+ID+  R+G  D A  +  N++ + +   W SL+    +HG   LG+ A     ++  
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEP 566

Query: 557 EGLAPDGVTFLVLLYACS 574
           E   P     L  +YA +
Sbjct: 567 EN--PGAYVLLSNIYATA 582


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 309/817 (37%), Positives = 461/817 (56%), Gaps = 45/817 (5%)

Query: 37  IKITSLLLRQC---KSLTQVYLIHQQIIV-------QNLTH--VPPSHLIAAYVSHNAPS 84
           ++  ++LL  C   KSL +  LIHQ ++         NLT+  VP   L+  Y++ +   
Sbjct: 9   LEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELK 68

Query: 85  PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
            A  +  ++   P +V  WN LIR        + A  L+ +M+  G  P+ +TFPFVLKA
Sbjct: 69  IARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKA 128

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C  L  +  G  +H  I     +SNV+V  AL+  YA+C  L  A+++FD+M +    D+
Sbjct: 129 CSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR---DV 185

Query: 205 VSWNTIVAAYA-QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           V+WN++++ ++   G  +    L  +M  DV    +  ++V  L A A + +   GK   
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQNDV--SPNSSTIVGVLPAVAQVNSLRHGK--- 240

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
             E       R  V DVV    ++  Y +    + A  +F  M    +  N VTWSA++ 
Sbjct: 241 --EIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMM---GIVKNEVTWSAMVG 295

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNV-----VTLVSLLSGCASVGALLLGKETHCYTIK 378
            Y       EAL++F Q+    L+ +V     VTL +++  CA++  L  G   HCY IK
Sbjct: 296 AYVVCDFMREALELFCQLLM--LKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
               +D      LMV N L+ MYAKC  ++ A   F+ +    RD  ++T +I  Y QNG
Sbjct: 354 SGFVLD------LMVGNTLLSMYAKCGIINGAMRFFNEMDL--RDAVSFTAIISGYVQNG 405

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            + + L +F +M  Q   + P   TL+  L ACA LA L +G   H Y +   +      
Sbjct: 406 NSEEGLRMFLEM--QLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTA-DTM 462

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N LIDMY++ G IDTAR VFD + +R +VSW +++  YG+HG+G +A   FD M+ EG
Sbjct: 463 ICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEG 522

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           L PD VTF+ L+ ACSHSG+V +G  +F++M+++FGI  R EHYAC+VDLL RA    E 
Sbjct: 523 LKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEV 582

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
              IE MP+EP   +W ALL+ CR++ NVELGE  + ++ +L  E  G++ LLSN+Y+  
Sbjct: 583 HSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAV 642

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQR 737
           GRW D A++R   K  G +K PGCSW++      TF  G  R+HPQ  +I   L  L+  
Sbjct: 643 GRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVE 702

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +K +GY  ++S+   DV++EEK  +L  HSEKLA+A+GIL+ +P   I +TKNLR+CGDC
Sbjct: 703 MKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDC 762

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+AI FIS++   +I +RD++RFHHFK+G C C  +W
Sbjct: 763 HTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/736 (38%), Positives = 433/736 (58%), Gaps = 24/736 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNAL    V+  L   A  LF +M+R G  P+E++   +L AC  L     G  +H
Sbjct: 147 NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIH 206

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++   G D + F  NAL+ MY++   +  A  +F ++  P   D+VSWN I+A      
Sbjct: 207 GLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHP---DVVSWNAIIAGCVLHD 263

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             +  LML   M G    + +  +L +AL ACA++G    G+Q         + +     
Sbjct: 264 CNDLALMLLDEMKGS-GTRPNMFTLSSALKACAAMGFKELGRQL-----HSSLIKMDAHS 317

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+ +   +V  YS+    +DA   +  M ++++    + W+A+I+GY+Q G   +A+ +F
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDI----IAWNALISGYSQCGDHLDAVSLF 373

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M    ++ N  TL ++L   AS+ A+ + K+ H  +IK  +        D  VIN+L+
Sbjct: 374 SKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIY------SDFYVINSLL 427

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y KC  +D A  +F+    +  D+  +T MI +YSQ G   +AL L+ QM  QD  +K
Sbjct: 428 DTYGKCNHIDEASKIFEERTWE--DLVAYTSMITAYSQYGDGEEALKLYLQM--QDADIK 483

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F  S  L ACA L+A   G+Q+H + ++  + M   F +N L++MY++ G I+ A  
Sbjct: 484 PDPFICSSLLNACANLSAYEQGKQLHVHAIKFGF-MCDIFASNSLVNMYAKCGSIEDADR 542

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F  +  R +VSW++++ GY  HG G +A   F+QM ++G+ P+ +T + +L AC+H+G+
Sbjct: 543 AFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGL 602

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G +YF+ M   FGI    EHYAC++DLLGR+ +L+EAVEL+  +P E    +W ALL
Sbjct: 603 VNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALL 662

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              RIH N+ELG+ AA  L +LE EK G++ LL+NIYA+AG W++VA++R  MK + VKK
Sbjct: 663 GAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKK 722

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG SW++ K+   TF VGDR+H +S +IY  L  L   +   GY       +H+VD  E
Sbjct: 723 EPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSE 782

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  LL+ HSEKLA+A+G++ T PG PIR+ KNLRIC DCH+   F+  I++ EII+RD N
Sbjct: 783 KEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDIN 842

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+GSC+C  YW
Sbjct: 843 RFHHFKDGSCSCGDYW 858



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 180/596 (30%), Positives = 292/596 (48%), Gaps = 36/596 (6%)

Query: 56  IHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           +H  +I    +  P   +HL+  Y        A  L+     S   V  W++L+   V+ 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDE--SSELDVVSWSSLLSGYVQN 60

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
              + A  +F +M   G   +E+TFP VLKAC        G  VH +   +GF+S+ FV 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N L+ MYA+C  L  +R+LF  + +    ++VSWN + + Y QS      + LF  M   
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVER---NVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVK-DVVSWNAMVTGYS 291
             +  +  S+   L+ACA L     G++  G+M        +M +  D  S NA+V  YS
Sbjct: 178 -GIMPNEFSISIILNACAGLQEGDLGRKIHGLM-------LKMGLDLDQFSANALVDMYS 229

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           + G  E A A+F    Q+    +VV+W+A+IAG         AL +  +M+  G  PN+ 
Sbjct: 230 KAGEIEGAVAVF----QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMF 285

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           TL S L  CA++G   LG++ H   IK       +H  DL     L+DMY+KC+ +D AR
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKM-----DAHS-DLFAAVGLVDMYSKCEMMDDAR 339

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
             +D++ PK +D+  W  +I  YSQ G   DA++LF +MF +D  +  N  TLS  L + 
Sbjct: 340 RAYDSM-PK-KDIIAWNALISGYSQCGDHLDAVSLFSKMFSED--IDFNQTTLSTVLKSV 395

Query: 472 ARLAALRFGRQIHAYVLRNQ-YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           A L A++  +QIH   +++  Y     +V N L+D Y +   ID A  +F+     ++V+
Sbjct: 396 ASLQAIKVCKQIHTISIKSGIYSDF--YVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           +TS++T Y  +G G++A   + QM+   + PD      LL AC++    +QG K     +
Sbjct: 454 YTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG-KQLHVHA 512

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
            +FG          +V++  +   +++A      +P     + W A++ G   H +
Sbjct: 513 IKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGI-VSWSAMIGGYAQHGH 567


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/736 (39%), Positives = 431/736 (58%), Gaps = 24/736 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W   I         + AF +F +M + G  P+  T+  VL A     + + G +VH
Sbjct: 191 SVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVH 250

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           + I ++G +S+  V  AL+ MYA+C +    RQ+F+++      D+++WNT++   A+ G
Sbjct: 251 SRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR---DLIAWNTMIGGLAEGG 307

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             E    ++ +M  +  V  + ++ V  L+AC +      GK     E   +V +     
Sbjct: 308 YWEEASEVYNQMQRE-GVMPNKITYVILLNACVNSAALHWGK-----EIHSRVAKAGFTS 361

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+   NA+++ YSR GS +DA  +F KM    V+ +V++W+A+I G A+ G G EAL V+
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKM----VRKDVISWTAMIGGLAKSGFGAEALTVY 417

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++MQ  G+EPN VT  S+L+ C+S  AL  G+  H   ++  L+ D        V N L+
Sbjct: 418 QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAH------VGNTLV 471

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           +MY+ C SV  AR +FD +    RD+  +  MIG Y+ +    +AL LF ++  Q++ +K
Sbjct: 472 NMYSMCGSVKDARQVFDRMI--QRDIVAYNAMIGGYAAHNLGKEALKLFDRL--QEEGLK 527

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+  T    L ACA   +L + R+IH  V +  +      V N L+  Y++ G    A +
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGF-FSDTSVGNALVSTYAKCGSFSDASI 586

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF+ + +RNV+SW +++ G   HG G  A   F++M+ EG+ PD VTF+ LL ACSH+G+
Sbjct: 587 VFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGL 646

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +++G +YF SMS++F I    EHY C+VDLLGRA +LDEA  LI+ MP +    IW ALL
Sbjct: 647 LEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALL 706

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH NV + E AA   L+L+ +    Y  LS++YA AG W   A++R LM+  GV K
Sbjct: 707 GACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 766

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG SW+Q  +    F   DR+HPQS+KIY  L  L   +K  GYVP T   +HDVD+ E
Sbjct: 767 EPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGE 826

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K + +  HSE+LA+AYG+++T PGT I I KNLR+C DCH+A  FIS I++ EII RD N
Sbjct: 827 KENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVN 886

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 887 RFHHFKDGVCSCGDYW 902



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 195/641 (30%), Positives = 323/641 (50%), Gaps = 70/641 (10%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSH----LIAAYVSHNAPSPALSLLQRISP 95
           +L++C   K L     +HQ II Q+ T VP  +    LI  Y+   +   A  + +++S 
Sbjct: 29  MLKRCIEVKDLVAGRQVHQHII-QHRT-VPDQYTVNALINMYIQCGSIEEARQVWKKLSY 86

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
              +V  WNA++   ++    + A +L  QM + G  PD  T    L +C    +   G 
Sbjct: 87  MERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGR 146

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +H     +G   +V V N ++ MYA+C ++  AR++FD+M +     +VSW   +  YA
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKK---SVVSWTITIGGYA 203

Query: 216 QSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
             G +E    +F +M   G V  +   +S++NA S+ A+L  W +     ++    +   
Sbjct: 204 DCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAAL-KWGKAVHSRILNAGHE--- 259

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                D     A+V  Y++ GS++D   +F+K+    V  +++ W+ +I G A+ G+  E
Sbjct: 260 ----SDTAVGTALVKMYAKCGSYKDCRQVFEKL----VNRDLIAWNTMIGGLAEGGYWEE 311

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A +V+ QMQ  G+ PN +T V LL+ C +  AL  GKE H    K           D+ V
Sbjct: 312 ASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK------AGFTSDIGV 365

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NALI MY++C S+  AR++FD +  K  DV +WT MIG  +++G   +AL ++ +M  Q
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRK--DVISWTAMIGGLAKSGFGAEALTVYQEM--Q 421

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              V+PN  T +  L AC+  AAL +GR+IH  V+          V N L++MYS  G +
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLAT-DAHVGNTLVNMYSMCGSV 480

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             AR VFD + QR++V++ +++ GY  H LG +A   FD++++EGL PD VT++ +L AC
Sbjct: 481 KDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNAC 540

Query: 574 SHSG----------MVDQGLKYFDSMSKEFGISARAE--------------------HYA 603
           ++SG          +V +G  + D+      +S  A+                     + 
Sbjct: 541 ANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWN 600

Query: 604 CIVDLLGRANRLDEAVELIEGMPME---PTPIIWVALLNGC 641
            I+    +  R  +A++L E M ME   P  + +V+LL+ C
Sbjct: 601 AIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSAC 641



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 171/609 (28%), Positives = 282/609 (46%), Gaps = 83/609 (13%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           D A  +   + ++G   +   +  +LK C E+     G  VH  I       + +  NAL
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MY +C ++  ARQ++ ++       + SWN +V  Y Q G  E  L L  +M     +
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERT-VHSWNAMVVGYIQYGYIEKALKLLRQMQQH-GL 122

Query: 237 QGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKK 270
             D  ++++ LS+C S G    G++                          CG +EEA++
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           VF++M+ K VVSW   + GY+  G  E AF +F+KM QE                     
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQE--------------------- 221

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
                         G+ PN +T +S+L+  +S  AL  GK  H     R+L  +  H  D
Sbjct: 222 --------------GVVPNRITYISVLNAFSSPAALKWGKAVH----SRIL--NAGHESD 261

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
             V  AL+ MYAKC S    R +F+ +   NRD+  W  MIG  ++ G   +A  ++ QM
Sbjct: 262 TAVGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
             Q + V PN  T    L AC   AAL +G++IH+ V +  +   I  V N LI MYSR 
Sbjct: 320 --QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG-VQNALISMYSRC 376

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G I  AR+VFD + +++V+SWT+++ G    G G +A   + +M++ G+ P+ VT+  +L
Sbjct: 377 GSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSIL 436

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            ACS    ++ G +    +  E G++  A     +V++      + +A ++ + M ++  
Sbjct: 437 NACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRD 494

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESE----KDGSYTLLSNIYANAGRWKDVAR 686
            + + A++ G   H    LG+ A      L+ E       +Y  + N  AN+G  +    
Sbjct: 495 IVAYNAMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWARE 551

Query: 687 IRSLMKHTG 695
           I +L++  G
Sbjct: 552 IHTLVRKGG 560


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 295/766 (38%), Positives = 446/766 (58%), Gaps = 76/766 (9%)

Query: 120 FRLFLQMMRRGWHPDE--YTFPFVLKACGELPSSRCGSSVHAVICSSG------------ 165
            R  ++++ +   PD    T+  VL+ C +L S + G  +H++I S+             
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143

Query: 166 ---------------FD----SNVFVCNALMAMYARC----DTLSY-------------- 188
                          FD      VF+ N LM  YA+     ++LS               
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR+LFDE+   G  D++SWN++++ Y  +G +E GL LF +M   + +  D  ++V+ ++
Sbjct: 204 ARKLFDEL---GDRDVISWNSMISGYVSNGLSEKGLDLFEQML-LLGINTDLATMVSVVA 259

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
            C++ G    G+        K  F     K++   N ++  YS+ G+   A  +F+ M +
Sbjct: 260 GCSNTGMLLLGRALHGYA-IKASFG----KELTLNNCLLDMYSKSGNLNSAIQVFETMGE 314

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +V    V+W+++IAGYA+ G    ++ +F +M+  G+ P++ T+ ++L  CA  G L  
Sbjct: 315 RSV----VSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLEN 370

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK+ H Y  +  +        DL V NAL+DMYAKC S+  A  +F  +  K  D+ +W 
Sbjct: 371 GKDVHNYIKENKMQ------SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK--DIVSWN 422

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MIG YS+N   N+AL LF +M    K   PN+ T++C L ACA LAAL  G++IH ++L
Sbjct: 423 TMIGGYSKNSLPNEALNLFVEMQYNSK---PNSITMACILPACASLAALERGQEIHGHIL 479

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           RN +  L   VAN L+DMY + G +  AR++FD + ++++VSWT ++ GYGMHG G +A 
Sbjct: 480 RNGFS-LDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAI 538

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
            AF++MR  G+ PD V+F+ +LYACSHSG++D+G  +F+ M     I  ++EHYACIVDL
Sbjct: 539 AAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDL 598

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           L RA  L +A + I+ MP+EP   IW ALL GCRI+ +V+L E  A  + ELE E  G Y
Sbjct: 599 LARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYY 658

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LL+NIYA A +W++V ++R  +   G++K PGCSW++ K     F  GD +HP + KI 
Sbjct: 659 VLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIE 718

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
            +L     R+K  G+ P+  +AL   DD EK   L  HSEK+A+A+GIL+  PG  +R+T
Sbjct: 719 LLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVT 778

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CGDCH    F+S ++  +IILRDSNRFHHFK+GSC+C+G+W
Sbjct: 779 KNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 219/502 (43%), Gaps = 87/502 (17%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN++I   V   L +    LF QM+  G + D  T   V+  C        G ++H 
Sbjct: 216 VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHG 275

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               + F   + + N L+ MY++   L+ A Q+F+ M   G   +VSW +++A YA+ G 
Sbjct: 276 YAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETM---GERSVVSWTSMIAGYAREGL 332

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------- 260
           ++  + LF  M  +  +  D  ++   L ACA  G    GK                   
Sbjct: 333 SDMSVRLFHEMEKE-GISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSN 391

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG M +A  VF  M+VKD+VSWN M+ GYS+     +A  LF +M Q N K 
Sbjct: 392 ALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKP 450

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N                                    +T+  +L  CAS+ AL  G+E H
Sbjct: 451 N-----------------------------------SITMACILPACASLAALERGQEIH 475

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            + ++   S+D        V NAL+DMY KC ++ +AR++FD I  K  D+ +WTVMI  
Sbjct: 476 GHILRNGFSLDRH------VANALVDMYLKCGALGLARLLFDMIPEK--DLVSWTVMIAG 527

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y  +G  ++A+A F +M  ++  ++P+  +    L AC+    L  G      +  N   
Sbjct: 528 YGMHGYGSEAIAAFNEM--RNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCI 585

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG---YGMHGLGDK-AH 548
                   C++D+ +R+G++  A      +  + +   W +L+ G   Y    L +K A 
Sbjct: 586 EPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAE 645

Query: 549 WAFDQMRKEGLAPDGVTFLVLL 570
             F+      L P+   + VLL
Sbjct: 646 HVFE------LEPENTGYYVLL 661



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 136/295 (46%), Gaps = 32/295 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W ++I    R  L D + RLF +M + G  PD +T   +L AC        G  VH
Sbjct: 316 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH 375

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +   S++FV NALM MYA+C ++  A  +F EM    + DIVSWNT++  Y+++ 
Sbjct: 376 NYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM---QVKDIVSWNTMIGGYSKNS 432

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                L LF  M  + K   + +++   L ACASL    RG++                 
Sbjct: 433 LPNEALNLFVEMQYNSK--PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA 490

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG +  A+ +F+ +  KD+VSW  M+ GY   G   +A A F +MR   ++
Sbjct: 491 NALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIE 550

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGAL 366
            + V++ +++   +  G   E    F  M+  C +EP       ++   A  G L
Sbjct: 551 PDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNL 605



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 126/319 (39%), Gaps = 72/319 (22%)

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           ++Y  C ++  + +  + I  K   +  + + I  + + G    A+ L  Q  + D  ++
Sbjct: 46  NLYHSCATIGTSVLPSETIDCK---ITDYNIEICRFCELGNLRRAMELINQSPKPDLELR 102

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
               T    L  CA L +++ GR+IH+ +  N  E +   + + L+ MY   GD+   R 
Sbjct: 103 ----TYCSVLQLCADLKSIQDGRRIHSIIQSNDVE-VDGVLGSKLVFMYVTCGDLREGRR 157

Query: 519 VFDNLKQRNVVSWTSLMTGYGM-------------------------------------- 540
           +FD +    V  W  LM GY                                        
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 541 -----------HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV-----DQGLK 584
                      +GL +K    F+QM   G+  D  T + ++  CS++GM+       G  
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYA 277

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
              S  KE  ++       C++D+  ++  L+ A+++ E M  E + + W +++ G   +
Sbjct: 278 IKASFGKELTLN------NCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAG---Y 327

Query: 645 ANVELGELAANRLLELESE 663
           A   L +++     E+E E
Sbjct: 328 AREGLSDMSVRLFHEMEKE 346


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/721 (39%), Positives = 419/721 (58%), Gaps = 47/721 (6%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA--RCDTLSYARQLFDEMFQP 199
           LK   +  S R    +HA I  +G  + +F  + L+   A  R   +SYA  LF+ + +P
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              ++  WN+++   + S      L+ F RM     V+ +  +    L +CA L +   G
Sbjct: 93  ---NLFIWNSMIRGLSMSLSPALALVFFVRMIYS-GVEPNSYTFPFLLKSCAKLASAHEG 148

Query: 260 KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           KQ                           G M  A+ VF++   +D +S+ A++ GY+  
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALW 208

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  + A  LF +M  ++V    V+W+A+IAGYAQ G   EAL +F  M+   + PN  T+
Sbjct: 209 GYMDRARQLFDEMPVKDV----VSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTI 264

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           VS+LS CA   AL LG     +   R L        +L ++NALIDMY+KC  +  AR +
Sbjct: 265 VSVLSACAQSNALDLGNSMRSWIEDRGLC------SNLKLVNALIDMYSKCGDLQTAREL 318

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +    RDV +W VMIG Y+      +ALALF +M      V+P   T    L +CA 
Sbjct: 319 FDDML--ERDVISWNVMIGGYTHMCSYKEALALFREMLASG--VEPTEITFLSILPSCAH 374

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L A+  G+ IHAY+ +N +  +   ++  LID+Y++ G+I  AR VFD +K +++ SW +
Sbjct: 375 LGAIDLGKWIHAYINKN-FNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNA 433

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ G  MHG  DKA   F +M  +G+ P+ +TF+ +L AC H+G+VD G ++F SM +++
Sbjct: 434 MICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDY 493

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            IS +++HY C++DLLGRA   +EA  L++ M ++P   IW +LL  CR H  VELGEL 
Sbjct: 494 KISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELV 553

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A RL ELE +  G+Y LLSNIYA AG+W DVARIR+ +   G+KK PGC+ ++       
Sbjct: 554 AERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHE 613

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F VGD+ HPQS+ IY +L  + +++K  G+V  TS  L+D+D+E K   L  HSEKLA+A
Sbjct: 614 FLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIA 673

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+++T PGTPIRI KNLR+C +CHSA   IS I N EII RD NRFHHFK+GSC+C  Y
Sbjct: 674 FGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDY 733

Query: 834 W 834
           W
Sbjct: 734 W 734



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 170/590 (28%), Positives = 271/590 (45%), Gaps = 115/590 (19%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLI--AAYVSHNAPSPALSLLQRISPSPF 98
           LL +C+S+     IH  II   L  T    S LI  +A       S A+SL   I     
Sbjct: 35  LLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP-- 92

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN++IR       P  A   F++M+  G  P+ YTFPF+LK+C +L S+  G  +H
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152

Query: 159 AVICSSGFDSNVFVCNALMAMYARC----------------DTLSY-------------- 188
           A +   GF S+VF+  +L+ MYA+                 D +S+              
Sbjct: 153 AHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMD 212

Query: 189 -ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            ARQLFDEM    + D+VSWN ++A YAQ G ++  L+LF  M     V  +  ++V+ L
Sbjct: 213 RARQLFDEM---PVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR-KANVPPNESTIVSVL 268

Query: 248 SACA---------SLGTW--SRG---------------KQCGMMEEAKKVFERMKVKDVV 281
           SACA         S+ +W   RG                +CG ++ A+++F+ M  +DV+
Sbjct: 269 SACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVI 328

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWN M+ GY+ + S+++A ALF++M                                   
Sbjct: 329 SWNVMIGGYTHMCSYKEALALFREMLAS-------------------------------- 356

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+EP  +T +S+L  CA +GA+ LGK  H Y  K        +     +  +LID+Y
Sbjct: 357 ---GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF------NSVSTSLSTSLIDLY 407

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC ++  AR +FD +  K + +A+W  MI   + +G A+ A  LF +M      ++PN 
Sbjct: 408 AKCGNIVAARQVFDGM--KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDG--IEPNE 463

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T    L AC     +  G+Q  + ++++           C+ID+  R+G  + A  +  
Sbjct: 464 ITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQ 523

Query: 522 NLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           N++ + +   W SL+     HG  +      +++ +  L PD     VLL
Sbjct: 524 NMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFE--LEPDNPGAYVLL 571


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 289/736 (39%), Positives = 425/736 (57%), Gaps = 24/736 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  WNAL    V   +   A  LF  M+  G  P+E++   ++  C  L  S  G  +H
Sbjct: 75  SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIH 134

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   G+DS+ F  NAL+ MYA+   L  A  +FDE+ +P   DIVSWN I+A      
Sbjct: 135 GYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKP---DIVSWNAIIAGCVLHE 191

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L L   M     +  +  +L +AL ACA +     G+Q         + +     
Sbjct: 192 YHHRALELLREMNKS-GMCPNMFTLSSALKACAGMALRELGRQL-----HSSLIKMDMGS 245

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D      ++  YS+  S +DA  +FK M + ++    + W+AVI+G++Q     EA  +F
Sbjct: 246 DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDM----IAWNAVISGHSQNEEDEEAASLF 301

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M   G+  N  TL ++L   A++ A  + ++ H  ++K     D        V+N+LI
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN------YVVNSLI 355

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y KC  V+ A  +F+  +P   D+  +T ++ +Y+Q+G   +AL L+ +M  QD+ +K
Sbjct: 356 DTYGKCGHVEDATRVFEE-SPI-VDLVLFTSLVTAYAQDGQGEEALRLYLEM--QDRGIK 411

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P++F  S  L ACA L+A   G+Q+H ++L+  + M   F  N L++MY++ G I+ A  
Sbjct: 412 PDSFVCSSLLNACASLSAYEQGKQVHVHILKFGF-MSDIFAGNSLVNMYAKCGSIEDASC 470

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F  +  R +VSW++++ G   HG G +A   F QM K G+ P+ +T + +L AC+H+G+
Sbjct: 471 AFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGL 530

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +   YF+SM   FGI    EHYAC++DLLGRA +L+ A+EL+  MP +   ++W ALL
Sbjct: 531 VAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALL 590

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              RIH N++LGE AA  LL LE EK G++ LL+NIYA+ G W  VAR+R LMK   VKK
Sbjct: 591 GAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKK 650

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG SW++ K+   TF VGDR+H +S +IY  L  L   +K  GYVP     LHDV+  E
Sbjct: 651 EPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSE 710

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  LL+ HSEKLA+A+G++ T PG PIR+ KNLRIC DCH+ + FIS I++ EII+RD+N
Sbjct: 711 KEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTN 770

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHF+EGSC+C  YW
Sbjct: 771 RFHHFREGSCSCGEYW 786



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 160/516 (31%), Positives = 257/516 (49%), Gaps = 26/516 (5%)

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G   +E+ FP VLKAC        G  VH ++  +GFDS+ FV N+L+ +YA+C     A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R LFD +       +VSWN + + Y  S      + LF  M     ++ +  SL + ++ 
Sbjct: 65  RSLFDAIPDRS---VVSWNALFSCYVHSDMHGEAVSLFHDMVLS-GIRPNEFSLSSMINV 120

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           C  L    +G++         + +     D  S NA+V  Y+++G  EDA ++F     E
Sbjct: 121 CTGLEDSVQGRKI-----HGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVF----DE 171

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
             K ++V+W+A+IAG     + H AL++ R+M   G+ PN+ TL S L  CA +    LG
Sbjct: 172 IAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELG 231

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           ++ H   IK  +  D        +   LIDMY+KC S+D AR++F  + P+ RD+  W  
Sbjct: 232 RQLHSSLIKMDMGSDS------FLGVGLIDMYSKCNSMDDARLVFK-LMPE-RDMIAWNA 283

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I  +SQN    +A +LFP M  +   +  N  TLS  L + A L A    RQIHA  L+
Sbjct: 284 VISGHSQNEEDEEAASLFPLMHTEG--IGFNQTTLSTVLKSIAALQANYMCRQIHALSLK 341

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
           + +E    +V N LID Y + G ++ A  VF+     ++V +TSL+T Y   G G++A  
Sbjct: 342 SGFE-FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALR 400

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            + +M+  G+ PD      LL AC+     +QG +    + K FG  +       +V++ 
Sbjct: 401 LYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMY 459

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            +   +++A      +P+    + W A++ G   H 
Sbjct: 460 AKCGSIEDASCAFSRIPVRGI-VSWSAMIGGLAQHG 494



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 168/335 (50%), Gaps = 17/335 (5%)

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   G++ N     S+L  C     L+LGK+ H      ++ V G   D+  V N+L+ +
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVH-----GIVVVTGFDSDEF-VANSLVIL 54

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC     AR +FDAI   +R V +W  +   Y  +    +A++LF  M      ++PN
Sbjct: 55  YAKCGGFGDARSLFDAIP--DRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSG--IRPN 110

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            F+LS  +  C  L     GR+IH Y+++  Y+    F AN L+DMY++ G ++ A  VF
Sbjct: 111 EFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDS-DAFSANALVDMYAKVGILEDASSVF 169

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D + + ++VSW +++ G  +H    +A     +M K G+ P+  T    L AC+   + +
Sbjct: 170 DEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRE 229

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G +   S+ K   + + +     ++D+  + N +D+A  + + MP E   I W A+++G
Sbjct: 230 LGRQLHSSLIK-MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVISG 287

Query: 641 CRIHANVELGELAANRLLELESEKDG-SYTLLSNI 674
              H+  E  E AA+    + +E  G + T LS +
Sbjct: 288 ---HSQNEEDEEAASLFPLMHTEGIGFNQTTLSTV 319



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 20/231 (8%)

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +K N F     L AC     L  G+Q+H  V+   ++    FVAN L+ +Y++ G    A
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDS-DEFVANSLVILYAKCGGFGDA 64

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +FD +  R+VVSW +L + Y    +  +A   F  M   G+ P+  +   ++  C  +
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVC--T 122

Query: 577 GMVD--QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           G+ D  QG K    + K  G  + A     +VD+  +   L++A  + + +  +P  + W
Sbjct: 123 GLEDSVQGRKIHGYLIK-LGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSW 180

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGS------YTLLSNIYANAG 679
            A++ GC +H          +R LEL  E + S      +TL S + A AG
Sbjct: 181 NAIIAGCVLHE-------YHHRALELLREMNKSGMCPNMFTLSSALKACAG 224


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 297/791 (37%), Positives = 453/791 (57%), Gaps = 29/791 (3%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L  + KSL     +H  II   ++      + L+  YV+         +  +I      V
Sbjct: 103 LCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND--KV 160

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F WN L+    ++     +  LF +M + G   + YTF  VLK    L   +    VH  
Sbjct: 161 FLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGY 220

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   GF SN  V N+L+A Y +   +  A  LFDE+ +P   D+VSWN+++     +G +
Sbjct: 221 VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP---DVVSWNSMINGCVVNGFS 277

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
             GL +F +M   + V+ D  +LV+ L ACA++G  S G+        K  F     ++V
Sbjct: 278 GNGLEIFIQML-ILGVEVDLTTLVSVLVACANIGNLSLGRALHGFG-VKACFS----EEV 331

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           V  N ++  YS+ G+   A  +F KM    +    V+W+++IA Y + G   +A+ +F +
Sbjct: 332 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTI----VSWTSIIAAYVREGLYSDAIGLFDE 387

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           MQ  G+ P++ T+ S++  CA   +L  G++ H Y IK  +        +L V NALI+M
Sbjct: 388 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG------SNLPVTNALINM 441

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC SV+ AR++F  I  K  D+ +W  MIG YSQN   N+AL LF  M +Q    KP+
Sbjct: 442 YAKCGSVEEARLVFSKIPVK--DIVSWNTMIGGYSQNLLPNEALELFLDMQKQ---FKPD 496

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T++C L ACA LAAL  GR+IH ++LR  Y   +  VA  L+DMY++ G +  A+++F
Sbjct: 497 DITMACVLPACAGLAALDKGREIHGHILRRGYFSDL-HVACALVDMYAKCGLLVLAQLLF 555

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D + +++++SWT ++ GYGMHG G++A   F++MR  G+ PD  +F  +L ACSHSG+++
Sbjct: 556 DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLN 615

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G K+F+SM  E G+  + EHYAC+VDLL R   L +A + IE MP++P   IW  LL+G
Sbjct: 616 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH +V+L E  A  + ELE +    Y +L+N+YA A +W++V ++R  M+  G K+ P
Sbjct: 676 CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 735

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++       F  G+  HPQ++KI  +L+ L  +++   Y     + L + DD EK 
Sbjct: 736 GCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKE 795

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            +   HSEK A+A+GIL   PG  +R++KN R+CGDCH    F+S     EI+LRDSNRF
Sbjct: 796 MIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRF 855

Query: 821 HHFKEGSCTCK 831
           HHFK+G C+C+
Sbjct: 856 HHFKDGLCSCR 866



 Score =  222 bits (566), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 162/590 (27%), Positives = 299/590 (50%), Gaps = 47/590 (7%)

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           +R A+ L     ++ L L            ++  VL+ C E  S   G  VH+VI S+G 
Sbjct: 77  LRNAIELLTKSKSYELGLN-----------SYCSVLQLCAEKKSLEDGKRVHSVIISNGI 125

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
             +  +   L+ MY  C  L   R++FD++       +  WN +++ YA+ G+    + L
Sbjct: 126 SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND---KVFLWNLLMSEYAKIGNFRESVSL 182

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F +M   + V G+  +    L   A+LG   + K+C  +     V +     +    N++
Sbjct: 183 FKKMQ-KLGVVGNCYTFTCVLKCFAALG---KVKECKRVH--GYVLKLGFGSNTAVVNSL 236

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           +  Y + G  E A  LF ++ +     +VV+W+++I G    G     L++F QM   G+
Sbjct: 237 IAAYFKFGGVESAHNLFDELSEP----DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 292

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           E ++ TLVS+L  CA++G L LG+  H + +K   S      ++++  N L+DMY+KC +
Sbjct: 293 EVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS------EEVVFSNTLLDMYSKCGN 346

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ A  +F  +   +  + +WT +I +Y + G  +DA+ LF +M  Q K V+P+ +T++ 
Sbjct: 347 LNGATEVF--VKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM--QSKGVRPDIYTVTS 402

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            + ACA  ++L  GR +H+YV++N     +P V N LI+MY++ G ++ AR+VF  +  +
Sbjct: 403 IVHACACSSSLDKGRDVHSYVIKNGMGSNLP-VTNALINMYAKCGSVEEARLVFSKIPVK 461

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           ++VSW +++ GY  + L ++A   F  M+K+   PD +T   +L AC+    +D+G +  
Sbjct: 462 DIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIH 520

Query: 587 DSMSKEFGISARAEHYAC-IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH- 644
             + +    S    H AC +VD+  +   L  A  L + +P +   I W  ++ G  +H 
Sbjct: 521 GHILRRGYFSDL--HVACALVDMYAKCGLLVLAQLLFDMIPKKDL-ISWTVMIAGYGMHG 577

Query: 645 -ANVELGELAANRLLELESEKDGSYTLLSNIYANAG----RWKDVARIRS 689
             N  +      R+  +E + + S++ + N  +++G     WK    +R+
Sbjct: 578 FGNEAISTFNEMRIAGIEPD-ESSFSAILNACSHSGLLNEGWKFFNSMRN 626



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 148/320 (46%), Gaps = 15/320 (4%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A I  + + G    A+++  + +    E  + +  S+L  CA   +L  GK  H   I 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSK--SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             +SVD +      +   L+ MY  C  +   R +FD I   N  V  W +++  Y++ G
Sbjct: 123 NGISVDEA------LGAKLVFMYVNCGDLVQGRKIFDKIM--NDKVFLWNLLMSEYAKIG 174

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              ++++LF +M  Q   V  N +T +C L   A L  ++  +++H YVL+  +      
Sbjct: 175 NFRESVSLFKKM--QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA- 231

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V N LI  Y + G +++A  +FD L + +VVSW S++ G  ++G        F QM   G
Sbjct: 232 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 291

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           +  D  T + +L AC++ G +  G +       +   S        ++D+  +   L+ A
Sbjct: 292 VEVDLTTLVSVLVACANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 619 VELIEGMPMEPTPIIWVALL 638
            E+   M  + T + W +++
Sbjct: 351 TEVFVKMG-DTTIVSWTSII 369


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 281/764 (36%), Positives = 435/764 (56%), Gaps = 52/764 (6%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN++I    +    ++A  LFL+M   G+  + +    +L A   L     G  +H  + 
Sbjct: 345  WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV 404

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             +  +S++ + +AL+ MY++C  +  A Q+F  + +    + VS+N ++A Y Q G AE 
Sbjct: 405  RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLER---NEVSYNALLAGYVQEGKAEE 461

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             L L+  M  +  +Q D  +    L+ CA+    ++G+Q         +      K+++ 
Sbjct: 462  ALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI-----HAHLIRANITKNIIV 516

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
               +V  YS  G    A  +F +M + N      +W+++I GY Q G   EAL +F+QMQ
Sbjct: 517  ETELVHMYSECGRLNYAKEIFNRMAERNA----YSWNSMIEGYQQNGETQEALRLFKQMQ 572

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              G++P+  +L S+LS C S+     G+E H + ++  +  +G     L V+  L+DMYA
Sbjct: 573  LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI----LQVV--LVDMYA 626

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD-------- 454
            KC S+D A  ++D    K  DV    VM+ ++  +G ANDA  LF QM Q++        
Sbjct: 627  KCGSMDYAWKVYDQTIKK--DVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSIL 684

Query: 455  -----KLVKPNAF----------------TLSCALMACARLAALRFGRQIHAYVLRNQYE 493
                 K +K  +F                T+   +  C+ L AL  G Q+H+ +++  + 
Sbjct: 685  AGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFV 744

Query: 494  MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
                 +   L+DMYS+ G I  AR VFDN+  +N+VSW ++++GY  HG   +A   +++
Sbjct: 745  NCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEE 804

Query: 554  MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
            M K+G+ P+ VTFL +L ACSH+G+V++GL+ F SM +++ I A+AEHY C+VDLLGRA 
Sbjct: 805  MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 864

Query: 614  RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            RL++A E +E MP+EP    W ALL  CR+H ++++G LAA RL EL+ +  G Y ++SN
Sbjct: 865  RLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSN 924

Query: 674  IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
            IYA AGRWK+V  IR +MK  GVKK PG SW++       F  G +THP++++IY  L  
Sbjct: 925  IYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRH 984

Query: 734  LVQRIKAMGYVPQTSFALHDVDD---EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
            L  + K +GY+P TSF L +V D   EE+ + L +HSE+LAL+ G+++    + IR+ KN
Sbjct: 985  LTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKN 1044

Query: 791  LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            LRICGDCH+A  FIS I    II RD+NRFHHF+ G C+C  YW
Sbjct: 1045 LRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 180/675 (26%), Positives = 307/675 (45%), Gaps = 60/675 (8%)

Query: 30  SVTTTPCIKITSL----LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNA 82
           S+ T P   +  L    L++ C    S  +   IH Q+I       P ++L+   +   A
Sbjct: 60  SIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYN--PDAYLMTKILMLYA 117

Query: 83  PSPALS-------LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
            S  L        L + +     +   WN +I    R+       RL+ +M   G   D+
Sbjct: 118 RSGCLDDLCYARKLFEEMPERNLTA--WNTMILAYARVDDYMEVLRLYGRMRGSGNFSDK 175

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +TFP V+KAC  +        + + +  +G + N+FV  AL+  YAR   +  A    DE
Sbjct: 176 FTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDE 235

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           +    +   V+WN ++A Y +    E    +F RM   + V  D  +  +AL  C +L +
Sbjct: 236 IEGTSV---VTWNAVIAGYVKILSWEEAWGIFDRML-KIGVCPDNFTFASALRVCGALRS 291

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
              GKQ      +K +    K  D    NA++  Y++    E    +F +M + N     
Sbjct: 292 RDGGKQV----HSKLIACGFK-GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ---- 342

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           VTW+++I+  AQ GH ++AL +F +MQ  G + N   L S+L   A +  +  G+E H +
Sbjct: 343 VTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGH 402

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            ++ +L+       D+++ +AL+DMY+KC  V+ A  +F ++  +N    ++  ++  Y 
Sbjct: 403 LVRNLLN------SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNE--VSYNALLAGYV 454

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           Q G A +AL L+  M  +D  ++P+ FT +  L  CA       GRQIHA+++R      
Sbjct: 455 QEGKAEEALELYHDMQSEDG-IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 513

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           I  V   L+ MYS  G ++ A+ +F+ + +RN  SW S++ GY  +G   +A   F QM+
Sbjct: 514 I-IVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 572

Query: 556 KEGLAPDGVTFLVLLYAC-----SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
             G+ PD  +   +L +C     S  G         ++M +E GI         +VD+  
Sbjct: 573 LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE-GILQ-----VVLVDMYA 626

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL--AANRLLELESEKDGSY 668
           +   +D A ++ +        I    +LN   + A V  G    A N   ++E      +
Sbjct: 627 KCGSMDYAWKVYD------QTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALW 680

Query: 669 TLLSNIYANAGRWKD 683
             +   YAN G  K+
Sbjct: 681 NSILAGYANKGLKKE 695



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 186/462 (40%), Gaps = 97/462 (20%)

Query: 56  IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH  +I  N+T   +  + L+  Y      + A  +  R++    + + WN++I    + 
Sbjct: 501 IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER--NAYSWNSMIEGYQQN 558

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
                A RLF QM   G  PD ++   +L +C  L  S+ G  +H  I  +  +    + 
Sbjct: 559 GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 618

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGIC----------------------------DIV 205
             L+ MYA+C ++ YA +++D+  +  +                             +  
Sbjct: 619 VVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTA 678

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---- 261
            WN+I+A YA  G  +     F  M  +  ++ D +++V  ++ C+SL     G Q    
Sbjct: 679 LWNSILAGYANKGLKKESFNHFLEML-ESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSL 737

Query: 262 -----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
                                  CG + +A+ VF+ M  K++VSWNAM++GYS+ G  ++
Sbjct: 738 IIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKE 797

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ---------------- 342
           A  L+++M ++ +  N VT+ A+++  +  G   E L +F  MQ                
Sbjct: 798 ALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMV 857

Query: 343 -FCG----------------LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
              G                +EP V T  +LL  C     + +G+       +R+  +D 
Sbjct: 858 DLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGR----LAAQRLFELDP 913

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            +P   ++++ +     + K V+  R M      K     +W
Sbjct: 914 QNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSW 955


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/699 (39%), Positives = 417/699 (59%), Gaps = 22/699 (3%)

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +  P VLKACG++  ++ G  +H  +   G D +VFV NALM MY  C  + YAR +FD+
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M +    D+VSW+T++ + +++ + +  L L   M   ++V+   V++V+ ++  A    
Sbjct: 155 MMER---DVVSWSTMIRSLSRNKEFDMALELIREMNF-MQVRPSEVAMVSMVNLFADTAN 210

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
              GK            E M V       A++  Y++ G    A  LF  + Q+ V    
Sbjct: 211 MRMGKAMHAYVIRNSNNEHMGVPTTT---ALLDMYAKCGHLGLARQLFNGLTQKTV---- 263

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+A+IAG  +     E   +F +MQ   + PN +T++SL+  C   GAL LGK+ H Y
Sbjct: 264 VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAY 323

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            ++   SV       L +  AL+DMY KC  +  AR +FD+   +NRDV  WT M+ +Y+
Sbjct: 324 ILRNGFSVS------LALATALVDMYGKCSDIRNARALFDS--TQNRDVMIWTAMLSAYA 375

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           Q    + A  LF QM  +   V+P   T+   L  CA   AL  G+ +H+Y+ + + E+ 
Sbjct: 376 QANCIDQAFNLFDQM--RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD 433

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
              +   L+DMY++ GDI+ A  +F     R++  W +++TG+ MHG G++A   F +M 
Sbjct: 434 C-ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 492

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
           ++G+ P+ +TF+ LL+ACSH+G+V +G K F+ M   FG+  + EHY C+VDLLGRA  L
Sbjct: 493 RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLL 552

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           DEA E+I+ MP++P  I+W AL+  CR+H N +LGELAA +LLE+E E  G   L+SNIY
Sbjct: 553 DEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIY 612

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A A RW D A +R  MK  G+KK PG S ++       F +GD++HPQ ++I E+LA + 
Sbjct: 613 AAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMR 672

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
           +++   GYVP TS  L ++D+EEK   L  HSEKLA+A+G+++TAP TPIRI KNLR+C 
Sbjct: 673 RKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCN 732

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH+A   +S I    II+RD NRFHHF+EG C+C  YW
Sbjct: 733 DCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 222/506 (43%), Gaps = 92/506 (18%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W+ +IR   R +  D A  L  +M      P E     ++    +  + R G ++HA
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 160 VICSSGFDSNVFV--CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            +  +  + ++ V    AL+ MYA+C  L  ARQLF+ + Q     +VSW  ++A   +S
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQK---TVVSWTAMIAGCIRS 276

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
              E G  LF RM  +  +  + +++++ +  C   G    GKQ                
Sbjct: 277 NRLEEGTKLFIRMQEE-NIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLAL 335

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                     C  +  A+ +F+  + +DV+ W AM++ Y++    + AF LF +MR    
Sbjct: 336 ATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS-- 393

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
                                            G+ P  VT+VSLLS CA  GAL LGK 
Sbjct: 394 ---------------------------------GVRPTKVTIVSLLSLCAVAGALDLGKW 420

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA-RVMFDAIAPKNRDVATWTVM 430
            H Y  K  + V      D ++  AL+DMYAKC  ++ A R+  +AI+   RD+  W  +
Sbjct: 421 VHSYIDKERVEV------DCILNTALVDMYAKCGDINAAGRLFIEAIS---RDICMWNAI 471

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ-----IHA 485
           I  ++ +G   +AL +F +M +Q   VKPN  T    L AC+    +  G++     +H 
Sbjct: 472 ITGFAMHGYGEEALDIFAEMERQG--VKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 529

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLG 544
           + L  Q E        C++D+  R+G +D A  +  ++  + N + W +L+    +H   
Sbjct: 530 FGLVPQIEHY-----GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNP 584

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLL 570
                A  Q+ +  + P+   + VL+
Sbjct: 585 QLGELAATQLLE--IEPENCGYNVLM 608



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 163/335 (48%), Gaps = 19/335 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I   +R    +   +LF++M      P+E T   ++  CG   + + G  +H
Sbjct: 262 TVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLH 321

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A I  +GF  ++ +  AL+ MY +C  +  AR LFD        D++ W  +++AYAQ+ 
Sbjct: 322 AYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNR---DVMIWTAMLSAYAQAN 378

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             +    LF +M     V+   V++V+ LS CA  G    GK      +     ER++V 
Sbjct: 379 CIDQAFNLFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDK----ERVEV- 432

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D +   A+V  Y++ G    A  LF     E +  ++  W+A+I G+A  G+G EALD+F
Sbjct: 433 DCILNTALVDMYAKCGDINAAGRLFI----EAISRDICMWNAIITGFAMHGYGEEALDIF 488

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+  G++PN +T + LL  C+  G +  GK+      ++++   G  P  +     ++
Sbjct: 489 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKK----LFEKMVHTFGLVP-QIEHYGCMV 543

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           D+  +   +D A  M  ++ P   +   W  ++ +
Sbjct: 544 DLLGRAGLLDEAHEMIKSM-PIKPNTIVWGALVAA 577


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/714 (40%), Positives = 423/714 (59%), Gaps = 26/714 (3%)

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           L  +M+  G  P+E++   VL AC  L     G  VH  +   G+DS+ F  NAL+ MYA
Sbjct: 175 LVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYA 234

Query: 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           +      A  +F E+ +P   DIVSWN ++A        +  L L  +M G  +V     
Sbjct: 235 KSGCPEAAIAVFYEIPKP---DIVSWNAVIAGCVLHEKNDLALKLLGKM-GSYRVAPSMF 290

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAF 300
           +L +AL ACA++G    G+Q            +M ++ D      ++  YS+ G  +DA 
Sbjct: 291 TLSSALKACAAIGLVKLGRQL------HSALMKMDMEPDSFVGVGLIDMYSKCGLLQDAR 344

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            +F  M  ++V    + W+++I+GY+  G+  EA+ +F  M   GLE N  TL ++L   
Sbjct: 345 MVFDLMPXKDV----IVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKST 400

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A   A    ++ H  +IK     DG       V N+L+D Y KC  ++ A  +F+ + P 
Sbjct: 401 AGSQANGFCEQVHTISIKSGYQYDG------YVANSLLDSYGKCCLLEDAAKVFE-VCPA 453

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
             D+  +T MI +YSQ G   +AL ++ +M  QD+ +KP+AF  S    ACA L+A   G
Sbjct: 454 -EDLVAYTSMITAYSQYGLGEEALKMYLRM--QDRDIKPDAFIFSSLFNACANLSAYEQG 510

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +QIH +VL+      + F  N L++MY++ G ID A  +F+ +  R +VSW++++ G   
Sbjct: 511 KQIHVHVLKCGLLSDV-FAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQ 569

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG G KA   F QM K G+ P+ +T + +L AC+H+G+V +  ++F  M K FGI+   E
Sbjct: 570 HGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQE 629

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HYAC+VD+LGR  RLDEA+ L++ MP + +  +W ALL   RIH N+ELG  AA  LL L
Sbjct: 630 HYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTL 689

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           E EK G++ LL+NIYA+ G W +VA++R  MK++ VKK PG SW++ K+   TF VGDR+
Sbjct: 690 EPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRS 749

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP+S++IY  L  L +R+ + GYVP     LHDV+  EK  LL+ HSEKLA+A+G++ T 
Sbjct: 750 HPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATP 809

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           PG PIR+ KNLR+C DCH+A  FIS + + EII+RD NRFHHF++GSC+C  YW
Sbjct: 810 PGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 211/442 (47%), Gaps = 60/442 (13%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           +Y++C     AR+L  +  +P   D+VSW+ +++ Y Q+G  E  L+ +  M   +  +G
Sbjct: 91  LYSKCQCFRVARKLVIDSSEP---DLVSWSALISGYVQNGRGEEALLTYYEMY-LLGAKG 146

Query: 239 DGVSLVNALSACASLGTWSRGKQ----------------------------CGMMEEAKK 270
           +  +  + L  C+       GKQ                            C  +E+   
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 271 VFERMKV----------KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
               MKV           D  S NA++  Y++ G  E A A+F     E  K ++V+W+A
Sbjct: 207 ---GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVF----YEIPKPDIVSWNA 259

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           VIAG         AL +  +M    + P++ TL S L  CA++G + LG++ H   +K  
Sbjct: 260 VIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMD 319

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           +      PD  + +  LIDMY+KC  +  AR++FD +  K  DV  W  +I  YS  G  
Sbjct: 320 M-----EPDSFVGV-GLIDMYSKCGLLQDARMVFDLMPXK--DVIVWNSIISGYSNCGYD 371

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +A++LF  M+++   ++ N  TLS  L + A   A  F  Q+H   +++ Y+    +VA
Sbjct: 372 IEAMSLFTNMYKEG--LEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQ-YDGYVA 428

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N L+D Y +   ++ A  VF+     ++V++TS++T Y  +GLG++A   + +M+   + 
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIK 488

Query: 561 PDGVTFLVLLYACSHSGMVDQG 582
           PD   F  L  AC++    +QG
Sbjct: 489 PDAFIFSSLFNACANLSAYEQG 510



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 196/409 (47%), Gaps = 27/409 (6%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +C     A+K+       D+VSW+A+++GY + G  E+A   + +M     K N  T+S+
Sbjct: 94  KCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSS 153

Query: 321 VIAGYA-----QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+ G +     + G     + +  +M   G+ PN  +L ++L+ CA +     G + H Y
Sbjct: 154 VLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGY 213

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            IK        +  D    NAL+DMYAK    + A  +F  I PK  D+ +W  +I    
Sbjct: 214 LIKL------GYDSDPFSANALLDMYAKSGCPEAAIAVFYEI-PK-PDIVSWNAVIAGCV 265

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            +   + AL L  +M      V P+ FTLS AL ACA +  ++ GRQ+H+ +++   E  
Sbjct: 266 LHEKNDLALKLLGKMGSYR--VAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEP- 322

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
             FV   LIDMYS+ G +  AR+VFD +  ++V+ W S+++GY   G   +A   F  M 
Sbjct: 323 DSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMY 382

Query: 556 KEGLAPDGVTFLVLLYACSHS---GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           KEGL  +  T   +L + + S   G  +Q      ++S + G          ++D  G+ 
Sbjct: 383 KEGLEFNQTTLSTILKSTAGSQANGFCEQ----VHTISIKSGYQYDGYVANSLLDSYGKC 438

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
             L++A ++ E  P E      VA  +    ++   LGE A    L ++
Sbjct: 439 CLLEDAAKVFEVCPAEDL----VAYTSMITAYSQYGLGEEALKMYLRMQ 483


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/798 (36%), Positives = 461/798 (57%), Gaps = 32/798 (4%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           +L+ R C ++     +H  ++V       V  + L+  Y +    S + +  + I     
Sbjct: 55  NLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRK-- 112

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           ++F WN+++   VR     ++     +++   G  PD YTFP VLKAC  L     G  +
Sbjct: 113 NIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKM 169

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   GF+ +V+V  +L+ +Y+R   +  A ++F +M    + D+ SWN +++ + Q+
Sbjct: 170 HCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDM---PVRDVGSWNAMISGFCQN 226

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G+    L +  RM  + +V+ D V++ + L  CA       G    +      V +    
Sbjct: 227 GNVAEALRVLDRMKTE-EVKMDTVTVSSMLPICAQSNDVVGGVLVHLY-----VIKHGLE 280

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            DV   NA++  YS+ G  +DA  +F  M   ++    V+W+++IA Y Q      AL  
Sbjct: 281 SDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDL----VSWNSIIAAYEQNDDPVTALGF 336

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-RVLSVDGSHPDDLMVINA 396
           F++M F G+ P+++T+VSL S    +    +G+  H + ++ R L VD      +++ NA
Sbjct: 337 FKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVD------IVIGNA 390

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L++MYAK  S+D AR +F+ +   +RDV +W  +I  Y+QNG A++A+  +  M ++ + 
Sbjct: 391 LVNMYAKLGSIDCARAVFEQLP--SRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRT 447

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           + PN  T    L A + + AL+ G +IH  +++N    L  FVA CLIDMY + G ++ A
Sbjct: 448 IVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCL-FLDVFVATCLIDMYGKCGRLEDA 506

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +F  + Q   V W ++++  G+HG G+KA   F  MR +G+  D +TF+ LL ACSHS
Sbjct: 507 MSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHS 566

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+VD+    FD+M KE+ I    +HY C+VDL GRA  L++A  L+  MP++    IW  
Sbjct: 567 GLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGT 626

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CRIH N ELG  A++RLLE++SE  G Y LLSNIYAN G+W+   ++RSL +  G+
Sbjct: 627 LLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGL 686

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           +K PG S V        F+ G+++HPQ  +IYE L  L  ++K++GYVP  SF L DV++
Sbjct: 687 RKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEE 746

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK ++L  HSE+LA+ +GI++T P +PIRI KNLR+CGDCH+A  +IS I   EII+RD
Sbjct: 747 DEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRD 806

Query: 817 SNRFHHFKEGSCTCKGYW 834
           SNRFHHFK+G C+C  YW
Sbjct: 807 SNRFHHFKDGICSCGDYW 824


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/740 (39%), Positives = 419/740 (56%), Gaps = 25/740 (3%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P    V  W AL+    +         LF +M   G  PD YT   VLK    L S   G
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG 215

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH ++   GF S   V NALMA YA+ +    A  +FD M      D++SWN++++  
Sbjct: 216 EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHR---DVISWNSMISGC 272

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
             +G  +  + LF RM  + + + D  +L++ L ACA L     G+             +
Sbjct: 273 TSNGLYDKAIELFVRMWLEGE-ELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQ 331

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
             + +V     ++  YS    +     +F+ M Q+NV    V+W+A+I  Y + G   + 
Sbjct: 332 TSLANV-----LLDMYSNCSDWRSTNKIFRNMVQKNV----VSWTAMITSYTRAGLYDKV 382

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             +F++M   G  P++  + S L   A    L  GK  H Y I+  +         L V 
Sbjct: 383 AGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGME------KVLAVT 436

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NAL++MY KC +++ A+++FD +  K  D+ +W  +IG YS+N  AN+A +LF +M  Q 
Sbjct: 437 NALMEMYVKCGNMEEAKLIFDGVVSK--DMISWNTLIGGYSRNNLANEAFSLFTEMLLQ- 493

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             ++PNA T++C L A A L++L  GR++HAY LR  Y +   FVAN LIDMY + G + 
Sbjct: 494 --LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGY-LEDDFVANALIDMYVKCGALL 550

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR +FD L  +N++SWT ++ GYGMHG G  A   F+QMR  G+APD  +F  +LYACS
Sbjct: 551 LARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+ D+G ++FD+M KE  I  R +HY C+VDLL     L EA E I+ MP+EP   IW
Sbjct: 611 HSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIW 670

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
           V+LL GCRIH NV+L E  A R+ ELE E  G Y LL+NIYA A RW+ V ++++ +   
Sbjct: 671 VSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGR 730

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G+++  GCSW++ K     F   +R HPQ  +I E L  + +R++  G+ P+  +AL   
Sbjct: 731 GLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGA 790

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           D+   G+ L  HS KLA+A+G+L  + G  IR+TKN R+C  CH A  FIS + + EIIL
Sbjct: 791 DNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIIL 850

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RDSNRFHHF++G C+C+GYW
Sbjct: 851 RDSNRFHHFEQGRCSCRGYW 870



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 234/455 (51%), Gaps = 33/455 (7%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSS-----GFDSNVFVCNALMAMYARCDTLSY 188
           D+ ++  VL+ C E+ S   G   H ++ +S     G D+   +   L+ MY +C  L  
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDN--VLGQKLVLMYLKCGDLEN 147

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR++FDEM  P + D+  W  +++ YA++GD   G++LF +M     V+ D  ++   L 
Sbjct: 148 ARRVFDEM--PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHC-CGVRPDAYTISCVLK 204

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
             A LG+   G      E    + E++         NA++  Y++    +DA  +F  M 
Sbjct: 205 CIAGLGSIEDG------EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
                 +V++W+++I+G    G   +A+++F +M   G E +  TL+S+L  CA +  L 
Sbjct: 259 HR----DVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLF 314

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG+  H Y++K       S      + N L+DMY+ C        +F  +  KN  V +W
Sbjct: 315 LGRVVHGYSVKTGFISQTS------LANVLLDMYSNCSDWRSTNKIFRNMVQKN--VVSW 366

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T MI SY++ G  +    LF +M  +    +P+ F ++ AL A A    L+ G+ +H Y 
Sbjct: 367 TAMITSYTRAGLYDKVAGLFQEMGLEG--TRPDIFAITSALHAFAGNELLKHGKSVHGYA 424

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +RN  E ++  V N L++MY + G+++ A+++FD +  ++++SW +L+ GY  + L ++A
Sbjct: 425 IRNGMEKVLA-VTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEA 483

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
              F +M  + L P+ VT   +L A +    +++G
Sbjct: 484 FSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERG 517



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 139/342 (40%), Gaps = 58/342 (16%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQY--EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
           L  C+ + +L  G++ H  V  +    + +   +   L+ MY + GD++ AR VFD + Q
Sbjct: 98  LQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQ 157

Query: 526 -RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             +V  WT+LM+GY   G   +    F +M   G+ PD  T   +L   +  G ++ G +
Sbjct: 158 VSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG-E 216

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR-- 642
               + ++ G  ++      ++    ++NR  +A+ + +GMP     I W ++++GC   
Sbjct: 217 VVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDV-ISWNSMISGCTSN 275

Query: 643 ----------------------------IHANVELGELAANRLLELESEKDG--SYTLLS 672
                                       + A  EL  L   R++   S K G  S T L+
Sbjct: 276 GLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLA 335

Query: 673 NI----YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
           N+    Y+N   W+   +I   M    V      SW      TA       T      +Y
Sbjct: 336 NVLLDMYSNCSDWRSTNKIFRNMVQKNV-----VSW------TAMI-----TSYTRAGLY 379

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
           + +AGL Q +   G  P   FA+        G+ L +H + +
Sbjct: 380 DKVAGLFQEMGLEGTRPDI-FAITSALHAFAGNELLKHGKSV 420


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 296/837 (35%), Positives = 468/837 (55%), Gaps = 51/837 (6%)

Query: 18  TLNHLFTNI-----KLFSVT-------TTPCIKITSLLLRQCKSLTQVYL---IHQQIIV 62
           T N LF +      +L SVT       T PC+      ++ C  L  + L   IH     
Sbjct: 76  TRNELFEDAMSIFSELISVTEHKPDNFTLPCV------IKACAGLLDLGLGQIIHGMATK 129

Query: 63  QNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120
            +L       + LIA Y        A+ + + +     ++  WN++I           +F
Sbjct: 130 MDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPER--NLVSWNSIICGFSENGFLQESF 187

Query: 121 RLFLQMM--RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
             F +M+     + PD  T   VL  C        G +VH +    G +  + V N+L+ 
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLID 247

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQ 237
           MY++C  LS A+ LFD+  +    +IVSWN+++  YA+  D      L  +M T D K++
Sbjct: 248 MYSKCRFLSEAQLLFDKNDKK---NIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMK 304

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D  +++N L  C       R +   + E     +      + +  NA +  Y+R G+  
Sbjct: 305 ADEFTILNVLPVCLE-----RSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            +  +F  M  + V     +W+A++ GYAQ     +ALD++ QM   GL+P+  T+ SLL
Sbjct: 360 SSERVFDLMDTKTVS----SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 415

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C+ + +L  G+E H + ++  L+VD        +  +L+ +Y  C     A+V+FD +
Sbjct: 416 LACSRMKSLHYGEEIHGFALRNGLAVDP------FIGISLLSLYICCGKPFAAQVLFDGM 469

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             ++R + +W VMI  YSQNG  ++A+ LF QM      ++P    + C   AC++L+AL
Sbjct: 470 --EHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG--IQPYEIAIMCVCGACSQLSAL 525

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           R G+++H + L+      I FV++ +IDMY++ G I  ++ +FD L++++V SW  ++ G
Sbjct: 526 RLGKELHCFALKAHLTEDI-FVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAG 584

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           YG+HG G +A   F++M + GL PD  TF  +L ACSH+G+V+ GL+YF+ M     I  
Sbjct: 585 YGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEP 644

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
           + EHY C+VD+LGRA R+D+A+ LIE MP +P   IW +LL+ CRIH N+ LGE  AN+L
Sbjct: 645 KLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKL 704

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           LELE EK  +Y L+SN++A +G+W DV R+R  MK  G++K  GCSW++       F +G
Sbjct: 705 LELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIG 764

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D   P+ +++ E    L  +I ++GY P T   LHD+++E+K  +L  HSEKLA+++G+L
Sbjct: 765 DEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLL 824

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            TA G P+R+ KNLRICGDCH+A  FIS ++N +I++RD+ RFHHF++G C+C  YW
Sbjct: 825 NTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 222/438 (50%), Gaps = 26/438 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA-LMAMYARCDTLSYARQLFDEMFQP 199
           +L+ACG+      G  +H ++ +S    N FV N  ++ MY+ C + S +R +FD++ + 
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              ++  WN IV+AY ++   E  + +F+ +    + + D  +L   + ACA L     G
Sbjct: 64  ---NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
           +    M     +     V DV   NA++  Y + G  E+A  +F+ M + N+    V+W+
Sbjct: 121 QIIHGMATKMDL-----VSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNL----VSWN 171

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLE---PNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++I G+++ G   E+ + FR+M   G E   P+V TLV++L  CA    +  G   H   
Sbjct: 172 SIICGFSENGFLQESFNAFREM-LVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLA 230

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K  L+      ++LMV N+LIDMY+KC+ +  A+++FD    KN  + +W  MIG Y++
Sbjct: 231 VKLGLN------EELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKN--IVSWNSMIGGYAR 282

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
                    L  +M  +D  +K + FT+   L  C   + L+  +++H Y  R+  +   
Sbjct: 283 EEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQS-N 341

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             VAN  I  Y+R G + ++  VFD +  + V SW +L+ GY  +    KA   + QM  
Sbjct: 342 ELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD 401

Query: 557 EGLAPDGVTFLVLLYACS 574
            GL PD  T   LL ACS
Sbjct: 402 SGLDPDWFTIGSLLLACS 419



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL  C     + +G+  H      ++S      +D ++   +I MY+ C S   +R++FD
Sbjct: 4   LLQACGQRKDIEVGRRLH-----EMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFD 58

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  KN  +  W  ++ +Y++N    DA+++F ++    +  KP+ FTL C + ACA L 
Sbjct: 59  KLRRKN--LFQWNAIVSAYTRNELFEDAMSIFSELISVTEH-KPDNFTLPCVIKACAGLL 115

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            L  G+ IH    +      + FV N LI MY + G ++ A  VF+++ +RN+VSW S++
Sbjct: 116 DLGLGQIIHGMATKMDLVSDV-FVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSII 174

Query: 536 TGYGMHGLGDKAHWAFDQM--RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
            G+  +G   ++  AF +M   +E   PD  T + +L  C+    +++G+     ++ + 
Sbjct: 175 CGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA-VHGLAVKL 233

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           G++        ++D+  +   L EA +L+     +   + W +++ G
Sbjct: 234 GLNEELMVNNSLIDMYSKCRFLSEA-QLLFDKNDKKNIVSWNSMIGG 279


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 296/791 (37%), Positives = 451/791 (57%), Gaps = 29/791 (3%)

Query: 43   LLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
            L  + KSL     +H  II   ++      + L+  YV+         +  +I      V
Sbjct: 378  LCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND--KV 435

Query: 101  FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            F WN L+    ++     +  LF +M + G   + YTF  VLK    L   +    VH  
Sbjct: 436  FLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGY 495

Query: 161  ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
            +   GF SN  V N+L+A Y +   +  A  LFDE+ +P   D+VSWN+++     +G +
Sbjct: 496  VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP---DVVSWNSMINGCVVNGFS 552

Query: 221  EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              GL +F +M   + V+ D  +LV+ L A A++G  S G+        K  F     ++V
Sbjct: 553  GNGLEIFIQML-ILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFG-VKACFS----EEV 606

Query: 281  VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
            V  N ++  YS+ G+   A  +F KM    +    V+W++ IA Y + G   +A+ +F +
Sbjct: 607  VFSNTLLDMYSKCGNLNGATEVFVKMGDTTI----VSWTSTIAAYVREGLYSDAIGLFDE 662

Query: 341  MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
            MQ  G+ P++ T+ S++  CA   +L  G++ H Y IK  +        +L V NALI+M
Sbjct: 663  MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG------SNLPVTNALINM 716

Query: 401  YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
            YAKC SV+ AR++F  I  K  D+ +W  MIG YSQN   N+AL LF  M +Q    KP+
Sbjct: 717  YAKCGSVEEARLVFSKIPVK--DIVSWNTMIGGYSQNSLPNEALELFLDMQKQ---FKPD 771

Query: 461  AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
              T++C L ACA LAAL  GR+IH ++LR  Y   +  VA  L+DMY++ G +  A+++F
Sbjct: 772  DITMACVLPACAGLAALDKGREIHGHILRRGYFSDL-HVACALVDMYAKCGLLVLAQLLF 830

Query: 521  DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
            D + +++++SWT ++ GYGMHG G++A   F++MR  G+ PD  +F V+L ACSHSG+++
Sbjct: 831  DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN 890

Query: 581  QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +G K+F+SM  E G+  + EHYAC+VDLL R   L +A + IE MP++P   IW  LL+G
Sbjct: 891  EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950

Query: 641  CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            CRIH +V+L E  A  + ELE +    Y +L+N+YA A +W++V ++R  M+  G K+ P
Sbjct: 951  CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 1010

Query: 701  GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
            GCSW++       F  G+  HPQ+++I  +L  L  +++   Y     + L + DD EK 
Sbjct: 1011 GCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKE 1070

Query: 761  DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             +   HSEK A+A+GIL   PG  +R++KN R+CGDCH    F+S     EI+LRDSNRF
Sbjct: 1071 MIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRF 1130

Query: 821  HHFKEGSCTCK 831
            HHFK+G C+C+
Sbjct: 1131 HHFKDGLCSCR 1141



 Score =  219 bits (559), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 158/576 (27%), Positives = 293/576 (50%), Gaps = 43/576 (7%)

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           +R A+ L     ++ L L            ++  VL+ C E  S   G  VH+VI S+G 
Sbjct: 352 LRNAIELLTKSKSYELGLN-----------SYCSVLQLCAEKKSLEDGKRVHSVIISNGI 400

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
             +  +   L+ MY  C  L   R++FD++       +  WN +++ YA+ G+    + L
Sbjct: 401 SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND---KVFLWNLLMSEYAKIGNFRESVSL 457

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F +M   + V G+  +    L   A+LG   + K+C  +     V +     +    N++
Sbjct: 458 FKKMQ-KLGVVGNCYTFTCVLKCFAALG---KVKECKRVH--GYVLKLGFGSNTAVVNSL 511

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           +  Y + G  E A  LF ++ +     +VV+W+++I G    G     L++F QM   G+
Sbjct: 512 IAAYFKFGGVESAHNLFDELSEP----DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 567

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           E ++ TLVS+L   A++G L LG+  H + +K   S      ++++  N L+DMY+KC +
Sbjct: 568 EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS------EEVVFSNTLLDMYSKCGN 621

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ A  +F  +   +  + +WT  I +Y + G  +DA+ LF +M  Q K V+P+ +T++ 
Sbjct: 622 LNGATEVF--VKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM--QSKGVRPDIYTVTS 677

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            + ACA  ++L  GR +H+YV++N     +P V N LI+MY++ G ++ AR+VF  +  +
Sbjct: 678 IVHACACSSSLDKGRDVHSYVIKNGMGSNLP-VTNALINMYAKCGSVEEARLVFSKIPVK 736

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           ++VSW +++ GY  + L ++A   F  M+K+   PD +T   +L AC+    +D+G +  
Sbjct: 737 DIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIH 795

Query: 587 DSMSKEFGISARAEHYAC-IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH- 644
             + +    S    H AC +VD+  +   L  A  L + +P +   I W  ++ G  +H 
Sbjct: 796 GHILRRGYFSDL--HVACALVDMYAKCGLLVLAQLLFDMIPKKDL-ISWTVMIAGYGMHG 852

Query: 645 -ANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
             N  +      R+  +E + + S++++ N  +++G
Sbjct: 853 FGNEAISTFNEMRIAGIEPD-ESSFSVILNACSHSG 887



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 146/320 (45%), Gaps = 15/320 (4%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A I  + + G    A+++  + +    E  + +  S+L  CA   +L  GK  H   I 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSK--SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             +S+D +      +   L+ MY  C  +   R +FD I   N  V  W +++  Y++ G
Sbjct: 398 NGISIDEA------LGAKLVFMYVNCGDLVQGRKIFDKIM--NDKVFLWNLLMSEYAKIG 449

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              ++++LF +M  Q   V  N +T +C L   A L  ++  +++H YVL+  +      
Sbjct: 450 NFRESVSLFKKM--QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA- 506

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V N LI  Y + G +++A  +FD L + +VVSW S++ G  ++G        F QM   G
Sbjct: 507 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 566

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           +  D  T + +L A ++ G +  G +       +   S        ++D+  +   L+ A
Sbjct: 567 VEVDLTTLVSVLVAWANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 625

Query: 619 VELIEGMPMEPTPIIWVALL 638
            E+   M  + T + W + +
Sbjct: 626 TEVFVKMG-DTTIVSWTSTI 644


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 299/826 (36%), Positives = 460/826 (55%), Gaps = 44/826 (5%)

Query: 15  TPLTLN-HLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQ-NLTHVPPSH 72
           +PL ++ H F N   +    +P +K T     Q +    V  I Q++ +  N T     H
Sbjct: 14  SPLPISIHSFQNTNQYH---SPTLKFT-----QSQPKPNVPHIQQELHINLNETQQLHGH 65

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
            I    + +   P  +L    S +    F    LI   ++   P +A +++  M      
Sbjct: 66  FIKTSSNCSYRVPLAALESYSSNAAIHSF----LITSYIKNNCPADAAKIYAYMRGTDTE 121

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D +  P VLKAC  +PS   G  VH  +  +GF  +VFVCNAL+ MY+   +L+ AR L
Sbjct: 122 VDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLL 181

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD++      D+VSW+T++ +Y +SG  +  L L   M   ++V+   + +++     A 
Sbjct: 182 FDKIENK---DVVSWSTMIRSYDRSGLLDEALDLLRDMHV-MRVKPSEIGMISITHVLAE 237

Query: 253 LGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           L     GK     +M   K          V    A++  Y +  +   A  +F  +    
Sbjct: 238 LADLKLGKAMHAYVMRNGK-----CGKSGVPLCTALIDMYVKCENLAYARRVFDGLS--- 289

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
            K ++++W+A+IA Y    + +E + +F +M   G+ PN +T++SL+  C + GAL LGK
Sbjct: 290 -KASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGK 348

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H +T++   ++       L++  A IDMY KC  V  AR +FD+   K++D+  W+ M
Sbjct: 349 LLHAFTLRNGFTLS------LVLATAFIDMYGKCGDVRSARSVFDSF--KSKDLMMWSAM 400

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I SY+QN   ++A  +F  M      ++PN  T+   LM CA+  +L  G+ IH+Y+ + 
Sbjct: 401 ISSYAQNNCIDEAFDIFVHMTGCG--IRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQ 458

Query: 491 --QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
             + +M++       +DMY+  GDIDTA  +F     R++  W ++++G+ MHG G+ A 
Sbjct: 459 GIKGDMILK---TSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAAL 515

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F++M   G+ P+ +TF+  L+ACSHSG++ +G + F  M  EFG + + EHY C+VDL
Sbjct: 516 ELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDL 575

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGRA  LDEA ELI+ MPM P   ++ + L  C++H N++LGE AA + L LE  K G  
Sbjct: 576 LGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYN 635

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            L+SNIYA+A RW DVA IR  MK  G+ K PG S ++       F +GDR HP ++K+Y
Sbjct: 636 VLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVY 695

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           E++  + ++++  GY P  S  LH++D E+K   L  HSEKLA+AYG+++TAPG PIRI 
Sbjct: 696 EMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIV 755

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCH+A   +S I   EII+RD NRFHHFKEGSC+C  YW
Sbjct: 756 KNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/797 (37%), Positives = 452/797 (56%), Gaps = 31/797 (3%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           +LLL +C SL ++  I   I    L   H+  + L++ +  + +   A  + + I     
Sbjct: 41  ALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKK-L 99

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V ++  +++   ++   D A + F++M      P  Y F ++LK CG+    R G  +H
Sbjct: 100 NVLYYT-MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++  SGF  ++F    L  MYA+C  +  AR++FD M +    D+VSWNTIVA Y+Q+G
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPER---DLVSWNTIVAGYSQNG 215

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            A   L +   M  +  ++   +++V+ L A ++L     GK      E      R    
Sbjct: 216 MARMALEMVNLMCEE-NLKPSFITIVSVLPAVSALRLIRIGK------EIHGYAMRAGFD 268

Query: 279 DVVSW-NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +V+   A+V  Y++ GS + A  LF  M + NV    V+W+++I  Y Q  +  EA+ +
Sbjct: 269 SLVNIATALVDMYAKCGSLKTARLLFDGMLERNV----VSWNSMIDAYVQNENPKEAMVI 324

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M   G++P  V+++  L  CA +G L  G+  H       LSV+     ++ V+N+L
Sbjct: 325 FQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH------KLSVELELDRNVSVVNSL 378

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY KCK VD A  MF  +  ++R + +W  MI  ++QNG   +AL  F QM  Q + V
Sbjct: 379 ISMYCKCKEVDTAASMFGKL--QSRTIVSWNAMILGFAQNGRPIEALNYFSQM--QARTV 434

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP+ FT    + A A L+     + IH  V+RN  +  + FV   L+DMY++ G I  AR
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNV-FVTTALVDMYAKCGAIMIAR 493

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
           ++FD + +R+V +W +++ GYG HG+G  A   F++M+K  + P+GVTFL ++ ACSHSG
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSG 553

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +V+ GLK F  M + + I    +HY  +VDLLGRA RL+EA + I  MP++P   ++ A+
Sbjct: 554 LVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  C+IH NV   E  A RL EL  E  G + LL+NIY  A  W+ V ++R  M   G++
Sbjct: 614 LGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K PGCS V+ K    +FF G   HP S+KIY  L  L+ +IK  GYVP T+  L  ++D+
Sbjct: 674 KTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDD 732

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            K  LL  HSEKLA+++G+L T  GT I + KNLR+C DCH+A  +IS++   EII+RD 
Sbjct: 733 VKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDM 792

Query: 818 NRFHHFKEGSCTCKGYW 834
            RFHHFK G+C+C  YW
Sbjct: 793 QRFHHFKNGACSCGDYW 809


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 296/796 (37%), Positives = 460/796 (57%), Gaps = 37/796 (4%)

Query: 43  LLRQCKSLTQVYLIHQQIIV----QNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           L   C ++     +H  ++V    QN+  V  + LI  YV+H   S + S    I     
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNI--VLSTKLINLYVTHGDISLSRSTFDYIHKK-- 83

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQM--MRRGWH--PDEYTFPFVLKACGELPSSRCG 154
           ++F WN++I   VR      A     Q+  M  G H  PD YTFP +LKAC  L     G
Sbjct: 84  NIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---G 140

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH  +   GF+ +VFV  +L+ +Y+R   L  A ++F +M    + D+ SWN +++ +
Sbjct: 141 KKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM---PVKDVGSWNAMISGF 197

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            Q+G+A G L +  RM G+  V+ D +++ + L  CA       G    +      V + 
Sbjct: 198 CQNGNAAGALGVLNRMKGE-GVKMDTITVASILPVCAQSDDVINGVLIHL-----HVLKH 251

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   NA++  YS+ G  +DA  +F +M   ++    V+W+++IA Y Q      A
Sbjct: 252 GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL----VSWNSIIAAYEQNNDPSTA 307

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L  F+ MQ  G+ P+++T+VSL S  + +    + +    + I+R          D+++ 
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWL-----DKDVVIG 362

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NAL++MYAK   ++ A  +FD +  K  D  +W  ++  Y+QNG A++A+  +  M ++ 
Sbjct: 363 NALVNMYAKLGYMNCAHTVFDQLPRK--DTISWNTLVTGYTQNGLASEAIDAY-NMMEEC 419

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           +   PN  T    + A + + AL+ G +IHA +++N   + + FVA CLID+Y + G ++
Sbjct: 420 RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV-FVATCLIDLYGKCGRLE 478

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A  +F  + +   V W +++   G+HG G++A   F  M  E +  D +TF+ LL ACS
Sbjct: 479 DAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+VD+G K FD M KE+GI    +HY C+VDLLGRA  L++A EL+  MP++P   IW
Sbjct: 539 HSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIW 598

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ C+I+ N ELG LA++RLLE++SE  G Y LLSNIYAN  +W+ V ++RSL +  
Sbjct: 599 GALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDR 658

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PG S V        F+ G++THP+  +IY+ L  L  ++K++GYVP  SF   D+
Sbjct: 659 GLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDI 718

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           +++EK  +L  HSE+LA+A+GI++T P +PIRI KNLR+CGDCH+A  +IS I   EI++
Sbjct: 719 EEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVV 778

Query: 815 RDSNRFHHFKEGSCTC 830
           RDSNRFHHFK+G C+C
Sbjct: 779 RDSNRFHHFKDGICSC 794


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/797 (37%), Positives = 454/797 (56%), Gaps = 31/797 (3%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           +LLL +C SL ++  I   +    L   H   + L++ +  + +   A  + + I  S  
Sbjct: 41  ALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID-SKL 99

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V + + +++   ++   D A + F++M      P  Y F ++LK CG+    R G  +H
Sbjct: 100 NVLY-HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++  SGF  ++F    L  MYA+C  ++ AR++FD M +    D+VSWNTIVA Y+Q+G
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER---DLVSWNTIVAGYSQNG 215

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            A   L +   M  +  ++   +++V+ L A ++L   S GK      E      R    
Sbjct: 216 MARMALEMVKSMCEE-NLKPSFITIVSVLPAVSALRLISVGK------EIHGYAMRSGFD 268

Query: 279 DVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +V+ + A+V  Y++ GS E A  LF  M + NV    V+W+++I  Y Q  +  EA+ +
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNV----VSWNSMIDAYVQNENPKEAMLI 324

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M   G++P  V+++  L  CA +G L  G+  H       LSV+     ++ V+N+L
Sbjct: 325 FQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH------KLSVELGLDRNVSVVNSL 378

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY KCK VD A  MF  +  ++R + +W  MI  ++QNG   DAL  F QM  + + V
Sbjct: 379 ISMYCKCKEVDTAASMFGKL--QSRTLVSWNAMILGFAQNGRPIDALNYFSQM--RSRTV 434

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP+ FT    + A A L+     + IH  V+R+  +  + FV   L+DMY++ G I  AR
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV-FVTTALVDMYAKCGAIMIAR 493

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
           ++FD + +R+V +W +++ GYG HG G  A   F++M+K  + P+GVTFL ++ ACSHSG
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +V+ GLK F  M + + I    +HY  +VDLLGRA RL+EA + I  MP++P   ++ A+
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  C+IH NV   E AA RL EL  +  G + LL+NIY  A  W+ V ++R  M   G++
Sbjct: 614 LGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K PGCS V+ K    +FF G   HP S+KIY  L  L+  IK  GYVP T+  L  V+++
Sbjct: 674 KTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVEND 732

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            K  LL  HSEKLA+++G+L T  GT I + KNLR+C DCH+A  +IS++   EI++RD 
Sbjct: 733 VKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDM 792

Query: 818 NRFHHFKEGSCTCKGYW 834
            RFHHFK G+C+C  YW
Sbjct: 793 QRFHHFKNGACSCGDYW 809


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/768 (37%), Positives = 440/768 (57%), Gaps = 27/768 (3%)

Query: 69  PPSHLIAAYVSHNAPSPALSLLQRI-SPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQM 126
           P SHL ++ V+      +L   +++    P   V  WN  +  A        A +LF  M
Sbjct: 22  PDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLM 81

Query: 127 MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL 186
                  +++ F  ++ A   L  +  G S+HA +C  GF+S++ + NA + MY +  ++
Sbjct: 82  RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSV 141

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
               Q F  M    I ++ S N +++ +  +   + G  +  ++  +   + +  + ++ 
Sbjct: 142 ENGWQFFKAMM---IENLASRNNLLSGFCDTETCDQGPRILIQLLVE-GFEPNMYTFISI 197

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L  CAS G  + GK         +V +     D   WN++V  Y++ GS   A  +F ++
Sbjct: 198 LKTCASKGDLNEGKAI-----HGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            + +V    V+W+A+I G+   G+G   L +F QM   G  PN+ T +S+L  C+S+  +
Sbjct: 253 PERDV----VSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 307

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LGK+ H   +K   S+DG+      V  AL+DMYAK + ++ A  +F+ +    RD+  
Sbjct: 308 DLGKQVHAQIVKN--SLDGND----FVGTALVDMYAKNRFLEDAETIFNRLIK--RDLFA 359

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WTV++  Y+Q+G    A+  F QM  Q + VKPN FTL+ +L  C+R+A L  GRQ+H+ 
Sbjct: 360 WTVIVAGYAQDGQGEKAVKCFIQM--QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSM 417

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
            ++      + FVA+ L+DMY++ G ++ A VVFD L  R+ VSW +++ GY  HG G K
Sbjct: 418 AIKAGQSGDM-FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 476

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A  AF+ M  EG  PD VTF+ +L ACSH G++++G K+F+S+SK +GI+   EHYAC+V
Sbjct: 477 ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 536

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           D+LGRA +  E    IE M +    +IW  +L  C++H N+E GE AA +L ELE E D 
Sbjct: 537 DILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDS 596

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
           +Y LLSN++A  G W DV  +R+LM   GVKK PGCSWV+       F   D +HP+ ++
Sbjct: 597 NYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIRE 656

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           I+  L  L Q++ ++GY P T   LH+V D EK +LLF HSE+LALA+ +L+T+    IR
Sbjct: 657 IHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIR 716

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I KNLRICGDCH  +  IS I N E+++RD N FHHFK GSC+C+ +W
Sbjct: 717 IFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 313/796 (39%), Positives = 443/796 (55%), Gaps = 37/796 (4%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           Q KSLT+   IHQ  + +N ++   S    L   Y+S N    A  L   I P+P SV  
Sbjct: 20  QSKSLTEAKKIHQHFL-KNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI-PNP-SVIL 76

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +IR        D A  L+  M+  G  P++YT+PFVLKAC  L +   G  +H+   
Sbjct: 77  WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +S+VFVC AL+  YA+C  L  A++LF  M      D+V+WN ++A  +  G  + 
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR---DVVAWNAMIAGCSLYGLCDD 193

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VV 281
            + L  +M      Q +G+   N+ +    L T    K  G  +       R    + VV
Sbjct: 194 AVQLIMQM------QEEGIC-PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               ++  Y++      A  +F  M   N     V+WSA+I GY       EAL++F QM
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNE----VSWSAMIGGYVASDCMKEALELFDQM 302

Query: 342 QFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK--RVLSVDGSHPDDLMVINALI 398
                ++P  VTL S+L  CA +  L  G++ HCY IK   VL        D+++ N L+
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL--------DILLGNTLL 354

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            MYAKC  +D A   FD + PK  D  +++ ++    QNG A  AL++F  M  Q   + 
Sbjct: 355 SMYAKCGVIDDAIRFFDEMNPK--DSVSFSAIVSGCVQNGNAAVALSIFRMM--QLSGID 410

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+  T+   L AC+ LAAL+ G   H Y++   +      + N LIDMYS+ G I  AR 
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT-DTLICNALIDMYSKCGKISFARE 469

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF+ + + ++VSW +++ GYG+HGLG +A   F  +   GL PD +TF+ LL +CSHSG+
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G  +FD+MS++F I  R EH  C+VD+LGRA  +DEA   I  MP EP   IW ALL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           + CRIH N+ELGE  + ++  L  E  G++ LLSNIY+ AGRW D A IR   K  G+KK
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PGCSW++       F  GD++H Q  +I   L  L+  +K +GY  + SF   DV++EE
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEE 709

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSEKLA+A+GIL    G PI +TKNLR+CGDCH+AI F+++I   EI +RD+N
Sbjct: 710 KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDAN 769

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK G+C C  +W
Sbjct: 770 RFHHFKNGTCNCGDFW 785



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/531 (27%), Positives = 240/531 (45%), Gaps = 77/531 (14%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+AC +  S      +H     +  +++  V + L  +Y  C+ +  AR+LFDE+  P 
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG- 259
              ++ WN I+ AYA +G  +G + L+  M   + V+ +  +    L AC+ L     G 
Sbjct: 74  ---VILWNQIIRAYAWNGPFDGAIDLYHSML-HLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 260 -------------------------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     +CG++ EA+++F  M  +DVV+WNAM+ G S  G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             +DA  L  +M++E                                   G+ PN  T+V
Sbjct: 190 LCDDAVQLIMQMQEE-----------------------------------GICPNSSTIV 214

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +L       AL  GK  H Y ++R      S  + ++V   L+DMYAKC+ +  AR +F
Sbjct: 215 GVLPTVGEAKALGHGKALHGYCVRR------SFDNGVVVGTGLLDMYAKCQCLLYARKIF 268

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +  +N    +W+ MIG Y  +    +AL LF QM  +D +  P   TL   L ACA+L
Sbjct: 269 DVMGVRNE--VSWSAMIGGYVASDCMKEALELFDQMILKDAM-DPTPVTLGSVLRACAKL 325

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             L  GR++H Y+++    +L   + N L+ MY++ G ID A   FD +  ++ VS++++
Sbjct: 326 TDLSRGRKLHCYIIK-LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAI 384

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++G   +G    A   F  M+  G+ PD  T L +L ACSH   +  G      +    G
Sbjct: 385 VSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR-G 443

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            +        ++D+  +  ++  A E+   M      + W A++ G  IH 
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI-VSWNAMIIGYGIHG 493



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 9/207 (4%)

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           VK N   L   L AC +  +L   ++IH + L+N        V + L  +Y     +  A
Sbjct: 7   VKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNA-DSSVLHKLTRLYLSCNQVVLA 62

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +FD +   +V+ W  ++  Y  +G  D A   +  M   G+ P+  T+  +L ACS  
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             ++ G++   S +K FG+ +       +VD   +   L EA  L   M      + W A
Sbjct: 123 LAIEDGVE-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV-VAWNA 180

Query: 637 LLNGCRIHANVELGELAANRLLELESE 663
           ++ GC ++    L + A   +++++ E
Sbjct: 181 MIAGCSLYG---LCDDAVQLIMQMQEE 204


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 311/794 (39%), Positives = 442/794 (55%), Gaps = 33/794 (4%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           Q KSLT+   IHQ  + +N ++   S    L   Y+S N    A  L   I P+P SV  
Sbjct: 20  QSKSLTEAKKIHQHFL-KNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI-PNP-SVIL 76

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +IR        D A  L+  M+  G  P++YT+PFVLKAC  L +   G  +H+   
Sbjct: 77  WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +S+VFVC AL+  YA+C  L  A++LF  M      D+V+WN ++A  +  G  + 
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR---DVVAWNAMIAGCSLYGLCDD 193

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VV 281
            + L  +M      Q +G+   N+ +    L T    K  G  +       R    + VV
Sbjct: 194 AVQLIMQM------QEEGIC-PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               ++  Y++      A  +F  M   N     V+WSA+I GY       EAL++F QM
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNE----VSWSAMIGGYVXSDCMKEALELFDQM 302

Query: 342 QFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
                ++P  VTL S+L  CA +  L  G++ HCY IK    +D      +++ N L+ M
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLD------ILLGNTLLSM 356

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC  +D A   FD + PK  D  +++ ++    QNG A  AL++F  M  Q   + P+
Sbjct: 357 YAKCGVIDDAIRFFDXMNPK--DSVSFSAIVSGCVQNGNAAVALSIFRMM--QLSGIDPD 412

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T+   L AC+ LAAL+ G   H Y++   +      + N LIDMYS+ G I  AR VF
Sbjct: 413 LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT-DTLICNALIDMYSKCGKISFAREVF 471

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           + + + ++VSW +++ GYG+HGLG +A   F  +   GL PD +TF+ LL +CSHSG+V 
Sbjct: 472 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVM 531

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G  +FD+MS++F I  R EH  C+VD+LGRA  +DEA   I  MP EP   IW ALL+ 
Sbjct: 532 EGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH N+ELGE  + ++  L  E  G++ LLSNIY+ AGRW D A IR   K  G+KK P
Sbjct: 592 CRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIP 651

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++       F  GD++H Q  +I   L  L+  +K +GY  + SF   DV++EEK 
Sbjct: 652 GCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKE 711

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            +L  HSEKLA+A+GIL    G PI +TKNLR+CGDCH+AI F+++I   EI +RD+NRF
Sbjct: 712 QILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRF 771

Query: 821 HHFKEGSCTCKGYW 834
           HHFK G+C C  +W
Sbjct: 772 HHFKNGTCNCGDFW 785



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/531 (27%), Positives = 240/531 (45%), Gaps = 77/531 (14%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+AC +  S      +H     +  +++  V + L  +Y  C+ +  AR+LFDE+  P 
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP- 72

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG- 259
              ++ WN I+ AYA +G  +G + L+  M   + V+ +  +    L AC+ L     G 
Sbjct: 73  --SVILWNQIIRAYAWNGPFDGAIDLYHSML-HLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 260 -------------------------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     +CG++ EA+++F  M  +DVV+WNAM+ G S  G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             +DA  L  +M++E                                   G+ PN  T+V
Sbjct: 190 LCDDAVQLIMQMQEE-----------------------------------GICPNSSTIV 214

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +L       AL  GK  H Y ++R      S  + ++V   L+DMYAKC+ +  AR +F
Sbjct: 215 GVLPTVGEAKALGHGKALHGYCVRR------SFDNGVVVGTGLLDMYAKCQCLLYARKIF 268

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +  +N    +W+ MIG Y  +    +AL LF QM  +D +  P   TL   L ACA+L
Sbjct: 269 DVMGVRNE--VSWSAMIGGYVXSDCMKEALELFDQMILKDAM-DPTPVTLGSVLRACAKL 325

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             L  GR++H Y+++    + I  + N L+ MY++ G ID A   FD +  ++ VS++++
Sbjct: 326 TDLSRGRKLHCYIIKLGXVLDI-LLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAI 384

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++G   +G    A   F  M+  G+ PD  T L +L ACSH   +  G      +    G
Sbjct: 385 VSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR-G 443

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            +        ++D+  +  ++  A E+   M      + W A++ G  IH 
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI-VSWNAMIIGYGIHG 493



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 9/207 (4%)

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           VK N   L   L AC +  +L   ++IH + L+N        V + L  +Y     +  A
Sbjct: 7   VKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNA-DSSVLHKLTRLYLSCNQVVLA 62

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +FD +   +V+ W  ++  Y  +G  D A   +  M   G+ P+  T+  +L ACS  
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             ++ G++   S +K FG+ +       +VD   +   L EA  L   M      + W A
Sbjct: 123 LAIEDGVE-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV-VAWNA 180

Query: 637 LLNGCRIHANVELGELAANRLLELESE 663
           ++ GC ++    L + A   +++++ E
Sbjct: 181 MIAGCSLYG---LCDDAVQLIMQMQEE 204


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 320/896 (35%), Positives = 465/896 (51%), Gaps = 124/896 (13%)

Query: 41   SLLLRQCKS---LTQVYLIHQQIIVQNLTHVPPSHL----IAAYVSHNAPSPALSLLQRI 93
            S +LR C S   L +   IH Q+I   +   P SHL    +  Y    + + A  +   I
Sbjct: 132  SGMLRTCASKGDLNEGKAIHGQVIKSGIN--PDSHLWNSLVNVYAKCGSANYACKVFGEI 189

Query: 94   SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
                  V  W ALI   V       A  LF +M R G   +E+T+   LKAC        
Sbjct: 190  PER--DVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEF 247

Query: 154  GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            G  VHA     G  S++FV +AL+ +YA+C  +  A ++F  M +    + VSWN ++  
Sbjct: 248  GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ---NAVSWNALLNG 304

Query: 214  YAQSGDAEGGLML----------FARMTGDVKVQGDGVS--------------------- 242
            +AQ GDAE  L L          F++ T    ++G   S                     
Sbjct: 305  FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELD 364

Query: 243  ------LVNALSACASLG---------------TWSRGKQC----GMMEEAKKVFERMKV 277
                  LV+  S C   G               +WS    C    G   EA +VF+RM+ 
Sbjct: 365  EFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH 424

Query: 278  KDVVS---------------------------------------WNAMVTGYSRIGSFED 298
              V+                                         NA+VT Y +IGS +D
Sbjct: 425  SGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQD 484

Query: 299  AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
               +F    +     ++++W+A+++G+         L +F QM   G  PN+ T +S+L 
Sbjct: 485  GCRVF----EATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILR 540

Query: 359  GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
             C+S+  + LGK+ H   +K   S+DG+      V  AL+DMYAK + ++ A  +F+ + 
Sbjct: 541  SCSSLSDVDLGKQVHAQIVKN--SLDGND----FVGTALVDMYAKNRFLEDAETIFNRLI 594

Query: 419  PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
               RD+  WTV++  Y+Q+G    A+  F QM  Q + VKPN FTL+ +L  C+R+A L 
Sbjct: 595  --KRDLFAWTVIVAGYAQDGQGEKAVKCFIQM--QREGVKPNEFTLASSLSGCSRIATLD 650

Query: 479  FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
             GRQ+H+  ++      + FVA+ L+DMY++ G ++ A VVFD L  R+ VSW +++ GY
Sbjct: 651  SGRQLHSMAIKAGQSGDM-FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGY 709

Query: 539  GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
              HG G KA  AF+ M  EG  PD VTF+ +L ACSH G++++G K+F+S+SK +GI+  
Sbjct: 710  SQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPT 769

Query: 599  AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
             EHYAC+VD+LGRA +  E    IE M +    +IW  +L  C++H N+E GE AA +L 
Sbjct: 770  IEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLF 829

Query: 659  ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
            ELE E D +Y LLSN++A  G W DV  +R+LM   GVKK PGCSWV+       F   D
Sbjct: 830  ELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 889

Query: 719  RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
             +HP+ ++I+  L  L Q++ ++GY P T   LH+V D EK +LLF HSE+LALA+ +L+
Sbjct: 890  GSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLS 949

Query: 779  TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            T+    IRI KNLRICGDCH  +  IS I N E+++RD N FHHFK GSC+C+ +W
Sbjct: 950  TSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/784 (36%), Positives = 432/784 (55%), Gaps = 101/784 (12%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM- 196
           F  +L+    +     G SVH  I   G    V++ N LM  YA+  +L +A  +FDEM 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 197 ---------------------------FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
                                      ++   CD VSW  I+  Y Q G  +  + +FA+
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CG 263
           M  + +V     ++ N LS+CA+  T   G++                          CG
Sbjct: 133 MISE-RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCG 191

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
               AK VF+RM VK++ +WNA+++ Y + G FE A + F+KM   ++    V+W+++I+
Sbjct: 192 DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI----VSWNSMIS 247

Query: 324 GYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           GY+Q+G+  EAL +F +M     L+P+  TL S+LS CA++  L +GK+ H Y ++    
Sbjct: 248 GYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFD-----------------------AIAP 419
             G+      V NALI MYAK   V++AR++ +                        + P
Sbjct: 308 TSGA------VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361

Query: 420 --------KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
                   ++RDV  WT MI  Y QNG  NDAL LF  M  +    +PN++TL+  L   
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP--EPNSYTLAAMLSVS 419

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVS 530
           + L  L  G+QIHA  ++   E   P V N LI MY+++G+I+ A+ VFD    ++ +VS
Sbjct: 420 SSLTILEHGKQIHASAIKAG-ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVS 478

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WTS++     HGLG +A   F++M   G+ PD +T++ +L AC+H G+V+QG KY++ M+
Sbjct: 479 WTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMT 538

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +   I     HYAC++DL GRA  L EA   IE MP+EP  I W +LL  C+IH N +L 
Sbjct: 539 EVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA 598

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           ++AA RLL ++    G+Y  L+N+Y+  G+W++ A+ R LMK  GV+K  G SW+  K  
Sbjct: 599 KVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNE 658

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F V D  HPQ  +IY+++A + + IK MG++P T   LHD+++E K  +L  HSEKL
Sbjct: 659 VHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKL 718

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G+L T   T +RI KNLR+C DCHSAI FIS ++  EII+RD+ RFHHFK+GSC+C
Sbjct: 719 AIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSC 778

Query: 831 KGYW 834
           + YW
Sbjct: 779 RDYW 782


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 310/860 (36%), Positives = 468/860 (54%), Gaps = 72/860 (8%)

Query: 21  HLFTNIKLFSVTTTP-------CIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH-VPPSH 72
           HL   +   + TT P       C K T   L+ CK++ ++ + H+ +  Q L + V    
Sbjct: 9   HLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTIT 68

Query: 73  LIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
            + A         +LS  + +   S S  + F +N+LIR      L + A  LFL+MM  
Sbjct: 69  KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNS 128

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  PD+YTFPF L AC +  +   G  +H +I   G+  ++FV N+L+  YA C  L  A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R++FDEM +    ++VSW +++  YA+   A+  + LF RM  D +V  + V++V  +SA
Sbjct: 189 RKVFDEMSER---NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISA 245

Query: 250 CASLGTWSRGKQCGMMEEAKKVF-----ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           CA L           +E  +KV+       ++V D++  +A+V  Y +  + + A  LF 
Sbjct: 246 CAKLED---------LETGEKVYAFIRNSGIEVNDLMV-SALVDMYMKCNAIDVAKRLFD 295

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +    N+ L     +A+ + Y ++G   EAL VF  M   G+ P+ ++++S +S C+ + 
Sbjct: 296 EYGASNLDL----CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLR 351

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            +L GK  H Y ++     +G    D  + NALIDMY KC   D A  +FD ++  N+ V
Sbjct: 352 NILWGKSCHGYVLR-----NGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMS--NKTV 403

Query: 425 ATWTVMIGSYSQNGGANDALALFPQM------------------------------FQQD 454
            TW  ++  Y +NG  + A   F  M                               Q  
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           + V  +  T+     AC  L AL   + I+ Y+ +N  ++ +  +   L+DM+SR GD +
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVR-LGTTLVDMFSRCGDPE 522

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           +A  +F++L  R+V +WT+ +    M G  ++A   FD M ++GL PDGV F+  L ACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H G+V QG + F SM K  G+S    HY C+VDLLGRA  L+EAV+LIE MPMEP  +IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            +LL  CR+  NVE+   AA ++  L  E+ GSY LLSN+YA+AGRW D+A++R  MK  
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PG S +Q +  T  F  GD +HP+   I  +L  + QR   +G+VP  S  L DV
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           D++EK  +L  HSEKLA+AYG++++  GT IRI KNLR+C DCHS   F S + N EIIL
Sbjct: 763 DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIIL 822

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD+NRFH+ ++G C+C  +W
Sbjct: 823 RDNNRFHYIRQGKCSCGDFW 842


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/784 (36%), Positives = 432/784 (55%), Gaps = 101/784 (12%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM- 196
           F  +L+    +     G SVH  I   G    V++ N LM  YA+  +L +A  +FDEM 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 197 ---------------------------FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
                                      ++   CD VSW  I+  Y Q G  +  + +FA+
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CG 263
           M  + +V     ++ N LS+CA+  T   G++                          CG
Sbjct: 133 MISE-RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCG 191

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
               AK VF+RM VK++ +WNA+++ Y + G FE A + F+KM   ++    V+W+++I+
Sbjct: 192 DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI----VSWNSMIS 247

Query: 324 GYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           GY+Q+G+  EAL +F +M     L+P+  TL S+LS CA++  L +GK+ H Y ++    
Sbjct: 248 GYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFD-----------------------AIAP 419
             G+      V NALI MYAK   V++AR++ +                        + P
Sbjct: 308 TSGA------VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361

Query: 420 --------KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
                   ++RDV  WT MI  Y QNG  NDAL LF  M  +    +PN++TL+  L   
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP--EPNSYTLAAMLSVS 419

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVS 530
           + L  L  G+QIHA  ++   E   P V N LI MY+++G+I+ A+ VFD    ++ +VS
Sbjct: 420 SSLTILEHGKQIHASAIKAG-ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVS 478

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WTS++     HGLG +A   F++M   G+ PD +T++ +L AC+H G+V+QG KY++ M+
Sbjct: 479 WTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMT 538

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +   I     HYAC++DL GRA  L EA   IE MP+EP  I W +LL  C+IH N +L 
Sbjct: 539 EVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA 598

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           ++AA RLL ++    G+Y  L+N+Y+  G+W++ A+ R LMK  GV+K  G SW+  K  
Sbjct: 599 KVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNE 658

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F V D  HPQ  +IY+++A + + IK MG++P T   LHD+++E K  +L  HSEKL
Sbjct: 659 VHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKL 718

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G+L T   T +RI KNLR+C DCHSAI FIS ++  EII+RD+ RFHHFK+GSC+C
Sbjct: 719 AIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSC 778

Query: 831 KGYW 834
           + YW
Sbjct: 779 RDYW 782


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 300/855 (35%), Positives = 460/855 (53%), Gaps = 98/855 (11%)

Query: 11  LKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP 70
           L S    T NH  T    F  T T  + I    L  C +L Q   I  Q+I+     +  
Sbjct: 21  LSSALKSTFNHKPT----FKPTIT--LSILETHLHNCHNLKQFNRILSQMILTGF--ISD 72

Query: 71  SHLIAAYVSHNAPSP------ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           +   +  +  +  SP      +L +  RI  S  + F WN ++R  ++    + A  L+ 
Sbjct: 73  TFAASRLLKFSTDSPFIGLDYSLQIFDRIENS--NGFMWNTMMRAYIQSNSAEKALLLYK 130

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
            M++    PD YT+P V++AC        G  +H  +   GFDS+V+V N L+ MYA C 
Sbjct: 131 LMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCG 190

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            +  AR+LFDE     + D VSWN+I+A Y +               GDV          
Sbjct: 191 NMRDARKLFDE---SPVLDSVSWNSILAGYVKK--------------GDV---------- 223

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
                                EEAK +F++M  +++V+ N+M+    ++G   +A+ LF 
Sbjct: 224 ---------------------EEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFN 262

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M ++++    V+WSA+I+GY Q G   EAL +F +M   G+  + V +VS+LS CA + 
Sbjct: 263 EMDEKDM----VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS 318

Query: 365 ALLLGKETHCYTIKRVLS-------------------------VDGSHPDDLMVINALID 399
            +  GK  H   I+  +                           +GSH  D +  N++I 
Sbjct: 319 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMIS 378

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
              KC SV+ AR +FD +  K  D+ +W+ +I  Y+Q+   ++ LALF +M  Q   ++P
Sbjct: 379 GCMKCGSVEKARALFDVMPEK--DIVSWSAVISGYAQHDCFSETLALFHEM--QLGQIRP 434

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +   L   + AC  LAAL  G+ +HAY+ +N  ++ +  +   L+DMY + G ++ A  V
Sbjct: 435 DETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNV-ILGTTLLDMYMKCGCVENALEV 493

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F+ ++++ V SW +L+ G  ++GL +++   F +M+  G+ P+ +TF+ +L AC H G+V
Sbjct: 494 FNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLV 553

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D+G  +F SM ++ GI    +HY C+VDLLGRA  L+EA +LIE MPM P    W ALL 
Sbjct: 554 DEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLG 613

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            C+ H + E+GE    +L+EL+ + DG + LLSNI+A+ G W+DV  +R +MK  GV K 
Sbjct: 614 ACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKT 673

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PGCS ++       F  GD+THP   K+  +L  + +R+K  GY P T+    D+D+EEK
Sbjct: 674 PGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEK 733

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
              LF HSEKLA+A+G+LT +P TPIRI KNLRIC DCH+A   IS     EI++RD +R
Sbjct: 734 ETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHR 793

Query: 820 FHHFKEGSCTCKGYW 834
           FH+FKEG+C+C  YW
Sbjct: 794 FHYFKEGACSCMDYW 808


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/736 (39%), Positives = 440/736 (59%), Gaps = 27/736 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V+ WN++I   V       A   F Q++      PD YTFP VLKACG L   R    +H
Sbjct: 182 VYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGR---KIH 238

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 GF  NVFV  +L+ MY+R      AR LFD+M      D+ SWN +++   Q+G
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM---PFRDMGSWNAMISGLIQNG 295

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           +A   L +   M  +  ++ + V++V+ L  C  LG  S      M+     +   ++  
Sbjct: 296 NAAQALDVLDEMRLE-GIKMNFVTVVSILPVCPQLGDIS----TAMLIHLYVIKHGLEFD 350

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
             VS NA++  Y++ G+ EDA   F++M       +VV+W+++IA Y Q      A   F
Sbjct: 351 LFVS-NALINMYAKFGNLEDARKAFQQM----FITDVVSWNSIIAAYEQNDDPVTAHGFF 405

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +MQ  G +P+++TLVSL S  A        +  H + ++R     G   +D+++ NA++
Sbjct: 406 VKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRR-----GWLMEDVVIGNAVV 460

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAK   +D A  +F+ I  K  DV +W  +I  Y+QNG A++A+ ++ +M ++ K + 
Sbjct: 461 DMYAKLGLLDSAHKVFEIIPVK--DVISWNTLITGYAQNGLASEAIEVY-KMMEECKEII 517

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  T    L A A + AL+ G +IH  V++    + + FVA CLID+Y + G +  A  
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV-FVATCLIDVYGKCGRLVDAMS 576

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F  + Q + V+W ++++ +G+HG  +K    F +M  EG+ PD VTF+ LL ACSHSG 
Sbjct: 577 LFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 636

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G K+   + +E+GI    +HY C+VDLLGRA  L+ A + I+ MP++P   IW ALL
Sbjct: 637 VEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 695

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH N+ELG+ A++RL E++S+  G Y LLSNIYAN G+W+ V ++RSL +  G+KK
Sbjct: 696 GACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 755

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG S ++       F+ G+++HP+ ++IYE L  L  ++K++GY+P  SF L DV+++E
Sbjct: 756 TPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDE 815

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSE+LA+A+GI++T P +PIRI KNLR+CGDCH+A  FIS I   EI++RDSN
Sbjct: 816 KEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSN 875

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 876 RFHHFKDGICSCGDYW 891



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           KV+ +     +V  Y+ +G    +   F ++ Q++V      W+++I+ Y   GH HEA+
Sbjct: 147 KVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDV----YAWNSMISAYVHNGHFHEAI 202

Query: 336 DVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             F Q+     + P+  T   +L  C   G L+ G++ HC+  K           ++ V 
Sbjct: 203 GCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQW------NVFVA 253

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +LI MY++     +AR +FD +    RD+ +W  MI    QNG A  AL +  +M  + 
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMP--FRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             +K N  T+   L  C +L  +     IH YV+++  E  + FV+N LI+MY++ G+++
Sbjct: 312 --IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL-FVSNALINMYAKFGNLE 368

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR  F  +   +VVSW S++  Y  +     AH  F +M+  G  PD +T + L    +
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            S            + +   +         +VD+  +   LD A ++ E +P++   I W
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDV-ISW 487

Query: 635 VALLNG 640
             L+ G
Sbjct: 488 NTLITG 493


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/723 (39%), Positives = 415/723 (57%), Gaps = 76/723 (10%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F  N +++ YA+   L  A Q+FD +    + D VSW TI+  Y Q G  E  + +F  M
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLI---PVRDSVSWTTIIVGYNQMGRFEDAIKIFVDM 98

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQC--------------------------GM 264
             D KV     +L N L++CA+ G+   GK+                           G 
Sbjct: 99  VKD-KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGD 157

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           ++ AK VF+RMK+++  SWNAM++ +   G  + A A F+ + + ++    V+W+++IAG
Sbjct: 158 LKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDI----VSWNSMIAG 213

Query: 325 YAQRGHGHEALDVFRQ-MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
             Q G  +EAL  F   ++   L+P+  +L S LS CA++  L  GK+ H Y ++ +   
Sbjct: 214 CNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDA 273

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVAR-----------------------VMFDAIAP- 419
            G+      V NALI MYAK   V++AR                       V    I P 
Sbjct: 274 SGA------VGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPA 327

Query: 420 -------KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
                  K+ DV  WT MI  Y QNG  NDA+ +F  M  +    +PN+FTL+  L A +
Sbjct: 328 RQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGP--RPNSFTLAAMLSASS 385

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-RNVVSW 531
            + +L  G+QIHA  +R+  E L P V N L  MY+++G I+ AR VF+ L+Q R+ VSW
Sbjct: 386 SVTSLNHGKQIHASAIRSG-EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSW 444

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           TS++     HGLG++A   F+QM   G+ PD +T++ +L AC+H G+V+QG  YFD M  
Sbjct: 445 TSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKN 504

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
              I     HYAC+VDL GRA  L EA + +E MPMEP  I W +LL+ C+++ NV+L +
Sbjct: 505 VHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAK 564

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
           +AA RLL +E    G+Y+ L+N+Y++ G+W D A+IR LMK  GVKK  G SWVQ +  T
Sbjct: 565 VAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKT 624

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F V D  HPQ  +IY+++  + + IK MG+ P T   LHD++ E K  +L  HSEKLA
Sbjct: 625 HVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLA 684

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+GI++T   T +RI KNLR+C DCH+AI FIS +++ EII+RD+ RFHHFK+GSC+CK
Sbjct: 685 IAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCK 744

Query: 832 GYW 834
            YW
Sbjct: 745 DYW 747



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 235/493 (47%), Gaps = 74/493 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I    ++   ++A ++F+ M++    P ++T   VL +C    S   G  VH+ + 
Sbjct: 75  WTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVV 134

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------------------- 202
             G  + V V N+L+ MYA+   L  A+ +FD M                          
Sbjct: 135 KLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALA 194

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   DIVSWN+++A   Q G     L  F+ +  D  ++ D  SL +ALSACA+L 
Sbjct: 195 QFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLE 254

Query: 255 TWSRGKQ--------------------------CGMMEEAKKVFERMKVK--DVVSWNAM 286
             S GKQ                           G +E A+++ E+  +   DV+++ A+
Sbjct: 255 KLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTAL 314

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + GY ++G    A  +F  ++      +VV W+A+I GY Q G  ++A++VF+ M   G 
Sbjct: 315 LNGYVKLGDITPARQIFNSLKDP----DVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGP 370

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            PN  TL ++LS  +SV +L  GK+ H   I+   ++  S      V NAL  MYAK  S
Sbjct: 371 RPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS------VGNALTTMYAKAGS 424

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ AR +F+ +  +NRD  +WT MI + +Q+G   +A+ LF QM      +KP+  T   
Sbjct: 425 INGARKVFNLLR-QNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLG--IKPDHITYVG 481

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK 524
            L AC     +  GR    + L      + P +++  C++D++ R+G +  A    +N+ 
Sbjct: 482 VLSACTHGGLVEQGRSY--FDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMP 539

Query: 525 -QRNVVSWTSLMT 536
            + +V++W SL++
Sbjct: 540 MEPDVIAWGSLLS 552



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 220/487 (45%), Gaps = 110/487 (22%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G   +A  +F  M VK   SWN +++GY++ G  E A  +F  +       + V+W+ 
Sbjct: 22  KTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVR----DSVSWTT 77

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I GY Q G   +A+ +F  M    + P   TL ++L+ CA+ G+  +GK+ H + +K  
Sbjct: 78  IIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVK-- 135

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------------- 421
           L +    P    V N+L++MYAK   + +A+V+FD +  +N                   
Sbjct: 136 LGLHACVP----VANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDL 191

Query: 422 ----------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
                     RD+ +W  MI   +Q+G  N+AL  F  +  +D  +KP+ F+L+ AL AC
Sbjct: 192 ALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSIL-KDTSLKPDRFSLASALSAC 250

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS--------------------- 510
           A L  L FG+QIH Y++R  ++     V N LI MY++S                     
Sbjct: 251 ANLEKLSFGKQIHGYIVRTMFDA-SGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVI 309

Query: 511 ------------GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
                       GDI  AR +F++LK  +VV+WT+++ GY  +GL + A   F  M  EG
Sbjct: 310 AFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEG 369

Query: 559 LAPDGVTFLVLLYACSHSGMVDQG-------LKYFDSMSKEFGISARAEHYACIVDLLG- 610
             P+  T   +L A S    ++ G       ++  +++S   G +A    YA    + G 
Sbjct: 370 PRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVG-NALTTMYAKAGSINGA 428

Query: 611 -------RANRL-----------------DEAVELIEGM---PMEPTPIIWVALLNGCRI 643
                  R NR                  +EA+EL E M    ++P  I +V +L+ C  
Sbjct: 429 RKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTH 488

Query: 644 HANVELG 650
              VE G
Sbjct: 489 GGLVEQG 495



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 129/566 (22%), Positives = 231/566 (40%), Gaps = 112/566 (19%)

Query: 87  LSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKAC 145
           L+L Q    S   +  WN++I    +    + A + F  +++     PD ++    L AC
Sbjct: 191 LALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSAC 250

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC------------------DTLS 187
             L     G  +H  I  + FD++  V NAL++MYA+                   D ++
Sbjct: 251 ANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIA 310

Query: 188 Y---------------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           +               ARQ+F+ +  P   D+V+W  ++  Y Q+G     + +F  M  
Sbjct: 311 FTALLNGYVKLGDITPARQIFNSLKDP---DVVAWTAMIVGYVQNGLNNDAIEVFKTMVS 367

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           +   + +  +L   LSA +S+ + + GKQ      A  +     +   V  NA+ T Y++
Sbjct: 368 E-GPRPNSFTLAAMLSASSSVTSLNHGKQI----HASAIRSGEALSPSVG-NALTTMYAK 421

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            GS   A  +F  +RQ     + V+W+++I   AQ G G EA+++F QM   G++P+ +T
Sbjct: 422 AGSINGARKVFNLLRQNR---DTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHIT 478

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
            V +LS C   G +  G+ ++   +K V  +D +    L     ++D++ +   +  A  
Sbjct: 479 YVGVLSACTHGGLVEQGR-SYFDLMKNVHKIDPT----LSHYACMVDLFGRAGLLQEAYK 533

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
             + + P   DV  W  ++ S       + A     ++     L++PN            
Sbjct: 534 FVENM-PMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLL----LIEPN------------ 576

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV---- 528
                       AY              + L ++YS  G  D A  +   +K R V    
Sbjct: 577 ---------NSGAY--------------SALANVYSSCGKWDDAAKIRKLMKARGVKKEQ 613

Query: 529 -VSWTSLMTGYGMHGLGDKAHWAFD-----------QMRKEGLAPDGVTFLVLLYACSHS 576
            +SW  +     + G+ D  H   D           +++K G APD  + L  L      
Sbjct: 614 GLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDL----EV 669

Query: 577 GMVDQGLKYF-DSMSKEFGISARAEH 601
            + DQ L+Y  + ++  FGI +  E+
Sbjct: 670 EVKDQILRYHSEKLAIAFGIISTPEN 695



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 167/397 (42%), Gaps = 68/397 (17%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           I +Q  + +L  +  + L+  YV     +PA  +   +      V  W A+I   V+  L
Sbjct: 297 IIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDP--DVVAWTAMIVGYVQNGL 354

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
            ++A  +F  M+  G  P+ +T   +L A   + S   G  +HA    SG   +  V NA
Sbjct: 355 NNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNA 414

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L  MYA+  +++ AR++F+ + Q    D VSW +++ A AQ G  E  + LF +M   + 
Sbjct: 415 LTTMYAKAGSINGARKVFNLLRQNR--DTVSWTSMIMALAQHGLGEEAIELFEQML-TLG 471

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM----KVKDVVS-WNAMVTGY 290
           ++ D ++ V  LSAC            G++E+ +  F+ M    K+   +S +  MV  +
Sbjct: 472 IKPDHITYVGVLSACT---------HGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLF 522

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
            R G  ++A+   + M                                       +EP+V
Sbjct: 523 GRAGLLQEAYKFVENMP--------------------------------------MEPDV 544

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
           +   SLLS C     + L K       +R+L ++   P++    +AL ++Y+ C   D A
Sbjct: 545 IAWGSLLSSCKVYKNVDLAK----VAAERLLLIE---PNNSGAYSALANVYSSCGKWDDA 597

Query: 411 ---RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
              R +  A   K     +W V I + +   G  D L
Sbjct: 598 AKIRKLMKARGVKKEQGLSW-VQIQNKTHVFGVEDGL 633



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T S  LM        + G  + A+ L N+  +   F  N ++  Y++ G ++ A  VF
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D +  R+ VSWT+++ GY   G  + A   F  M K+ + P   T   +L +C+ +G   
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G K   S   + G+ A       ++++  +   L  A  + + M +  T   W A+++ 
Sbjct: 125 IG-KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTS-SWNAMIS- 181

Query: 641 CRIHANVELGELAANRLLELESEKD 665
             +H N    +LA  +  EL SE+D
Sbjct: 182 --LHMNCGRVDLALAQ-FELLSERD 203


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/736 (38%), Positives = 421/736 (57%), Gaps = 24/736 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNA+I    +L     AF LF QM+     P   TF  VL AC      + G   H
Sbjct: 126 TVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFH 185

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +   GF S+  +  AL++MY +  ++  ARQ+FD +++    D+ ++N ++  YA+SG
Sbjct: 186 AQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKR---DVSTFNVMIGGYAKSG 242

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           D E    LF RM  +   + + +S ++ L  C++    + GK         +      V 
Sbjct: 243 DGEKAFQLFYRMQQE-GFKPNRISFLSILDGCSTPEALAWGKAV-----HAQCMNTGLVD 296

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV    A++  Y   GS E A  +F KM+  +V    V+W+ +I GYA+  +  +A  +F
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDV----VSWTVMIRGYAENSNIEDAFGLF 352

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             MQ  G++P+ +T + +++ CAS   L L +E H   ++           DL+V  AL+
Sbjct: 353 ATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR------AGFGTDLLVDTALV 406

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            MYAKC ++  AR +FDA++   RDV +W+ MIG+Y +NG   +A   F  M + +  V+
Sbjct: 407 HMYAKCGAIKDARQVFDAMS--RRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNN--VE 462

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+  T    L AC  L AL  G +I+   ++      IP V N LI+M  + G I+ AR 
Sbjct: 463 PDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIP-VGNALINMNVKHGSIERARY 521

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F+N+ QR+VV+W  ++ GY +HG   +A   FD+M KE   P+ VTF+ +L ACS +G 
Sbjct: 522 IFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGF 581

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G ++F  +    GI    E Y C+VDLLGRA  LDEA  LI  MP++P   IW  LL
Sbjct: 582 VEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLL 641

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRI+ N+++ E AA R L  E      Y  LS++YA AG W++VA++R +M+  GV+K
Sbjct: 642 AACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRK 701

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             GC+W++ +    TF V DR+HPQ+ +IY  LA L+  IK  GY+P T   LH+V ++E
Sbjct: 702 EQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQE 761

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K + +  HSEKLA+AYG+L+   G PIRI KNLR+CGDCHSA  FIS +   EII RD++
Sbjct: 762 KEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDAS 821

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK G C+C  YW
Sbjct: 822 RFHHFKNGVCSCGDYW 837



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 158/541 (29%), Positives = 259/541 (47%), Gaps = 78/541 (14%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           H D  T+  + + C  L  +  G  V   I  SG   N++  N L+ +++ C  +  ARQ
Sbjct: 58  HIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQ 117

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
            FD +       +V+WN I+A YAQ G  +    LF +M  D  ++   ++ +  L AC+
Sbjct: 118 TFDSVENK---TVVTWNAIIAGYAQLGHVKEAFALFRQMV-DEAMEPSIITFLIVLDACS 173

Query: 252 SLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNA 285
           S      GK+                           G M+ A++VF+ +  +DV ++N 
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           M+ GY++ G  E AF LF +M+QE                                   G
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQE-----------------------------------G 258

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            +PN ++ +S+L GC++  AL  GK  H   +   L       DD+ V  ALI MY  C 
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL------VDDVRVATALIRMYMGCG 312

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           S++ AR +FD +  K RDV +WTVMI  Y++N    DA  LF  M  Q++ ++P+  T  
Sbjct: 313 SIEGARRVFDKM--KVRDVVSWTVMIRGYAENSNIEDAFGLFATM--QEEGIQPDRITYI 368

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + ACA  A L   R+IH+ V+R  +   +  V   L+ MY++ G I  AR VFD + +
Sbjct: 369 HIINACASSADLSLAREIHSQVVRAGFGTDL-LVDTALVHMYAKCGAIKDARQVFDAMSR 427

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R+VVSW++++  Y  +G G++A   F  M++  + PD VT++ LL AC H G +D G++ 
Sbjct: 428 RDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEI 487

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           +    K   +S      A ++++  +   ++ A  + E M ++   + W  ++ G  +H 
Sbjct: 488 YTQAIKADLVSHIPVGNA-LINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHG 545

Query: 646 N 646
           N
Sbjct: 546 N 546


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/773 (36%), Positives = 436/773 (56%), Gaps = 46/773 (5%)

Query: 71   SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
            S L+  YV     + A  +   +S S  +V  WN ++    ++   + +  LF+QM   G
Sbjct: 354  SKLVFMYVKCGDMASARRVFDAMS-SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELG 412

Query: 131  WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              PDE+    +LK    L  +R G   H  I   GF +   VCNAL++ YA+ + +  A 
Sbjct: 413  IAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAV 472

Query: 191  QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNAL 247
             +F+ M +    D +SWN++++  + +G     + LF RM      QG   D V+L++ L
Sbjct: 473  LVFNRMPRQ---DTISWNSVISGCSSNGLNSEAIELFIRMW----TQGQELDSVTLLSVL 525

Query: 248  SACASLGTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAF 300
             ACA    W  G+       + G++ E                NA++  YS    ++   
Sbjct: 526  PACAQSRYWFAGRVVHGYSVKTGLIGETSLA------------NALLDMYSNCSDWQSTN 573

Query: 301  ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
             +F+ M Q+NV    V+W+A+I  Y + G   +   + ++M   G+ P+V  + S L   
Sbjct: 574  QIFRSMGQKNV----VSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAF 629

Query: 361  ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
            A   +L  GK  H YTI+  +         L V NAL++MY KC++V+ AR++FD +   
Sbjct: 630  AGDESLKQGKSVHGYTIRNGME------KLLPVANALMEMYVKCRNVEEARLIFDRVT-- 681

Query: 421  NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            N+DV +W  +IG YS+N   N++ +LF  M  Q    +PNA T++C L A A +++L  G
Sbjct: 682  NKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ---FRPNAVTMTCILPAAASISSLERG 738

Query: 481  RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
            R+IHAY LR  + +   + +N L+DMY + G +  ARV+FD L ++N++SWT ++ GYGM
Sbjct: 739  REIHAYALRRGF-LEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGM 797

Query: 541  HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
            HG G  A   F+QMR  G+ PD  +F  +LYAC HSG+  +G ++F +M KE+ I  + +
Sbjct: 798  HGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLK 857

Query: 601  HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
            HY CIVDLL R   L EA+E IE MP+EP   IWV+LL+GCRIH NV+L E  A+++ +L
Sbjct: 858  HYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKL 917

Query: 661  ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
            E E  G Y LL+NIYA A RW+ V ++++ +   G+++  G SW++ +     F   +R 
Sbjct: 918  EPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRN 977

Query: 721  HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
            HP   +I E L  + +R++  G+ P+  +AL   DD    + L  HS KLA+A+G+L   
Sbjct: 978  HPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLP 1037

Query: 781  PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
             G PIR+TKN ++C  CH A  FIS + N EIILRDS+RFH F+ G C+C+GY
Sbjct: 1038 EGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 233/453 (51%), Gaps = 27/453 (5%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVI-----CSSGFDSNVFVCNALMAMYARCDTLSY 188
           D  ++  V++ CGE  S       HA+I      ++G   +V     ++A Y +C  L  
Sbjct: 96  DVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLA-YLKCGDLGE 154

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR +FD M  P   D+  W ++++AYA++GD +  + LF +M     V  D  ++   L 
Sbjct: 155 ARTVFDGM-PPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC-CGVSPDAHAVSCVLK 212

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNAMVTGYSRIGSFEDAFALFKKMR 307
             +SLG+ + G      E    + E++ +    +  NA++  YSR G  EDA  +F  M 
Sbjct: 213 CVSSLGSLTEG------EVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMH 266

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
             +     ++W+++I G    G    A+D+F +M   G E + VT++S+L  CA +G  L
Sbjct: 267 PRDA----ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGL 322

Query: 368 LGKETHCYTIKRVL--SVDG--SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
           +GK  H Y++K  L   +D   S  DD  + + L+ MY KC  +  AR +FDA++ K  +
Sbjct: 323 IGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG-N 381

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           V  W +++G Y++ G   ++L+LF QM +    + P+   +SC L     L+  R G   
Sbjct: 382 VHVWNLIMGGYAKVGEFEESLSLFVQMHELG--IAPDEHAISCLLKCITCLSCARDGLVA 439

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H Y+++  +      V N LI  Y++S  I  A +VF+ + +++ +SW S+++G   +GL
Sbjct: 440 HGYIVKLGFGAQCA-VCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGL 498

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +A   F +M  +G   D VT L +L AC+ S
Sbjct: 499 NSEAIELFIRMWTQGQELDSVTLLSVLPACAQS 531



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 160/614 (26%), Positives = 267/614 (43%), Gaps = 121/614 (19%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+ AY+       A ++   + P    V  W +L+    +      A  LF QM   G  
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD +    VLK    L S   G  +H ++   G      V NAL+A+Y+RC  +  A ++
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS---A 249
           FD M      D +SWN+++     +G     + LF++M      QG  +S V  LS   A
Sbjct: 262 FDSMHPR---DAISWNSMIGGCFSNGWHGTAVDLFSKMWS----QGTEISSVTVLSVLPA 314

Query: 250 CASLGTWSRGK------------------------------------QCGMMEEAKKVFE 273
           CA LG    GK                                    +CG M  A++VF+
Sbjct: 315 CAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFD 374

Query: 274 RMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK---------LNVVT------ 317
            M  K +V  WN ++ GY+++G FE++ +LF +M +  +          L  +T      
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCAR 434

Query: 318 --------------------WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
                                +A+I+ YA+     +A+ VF +M       + ++  S++
Sbjct: 435 DGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP----RQDTISWNSVI 490

Query: 358 SGCASVG----ALLL-------GKETHCYTIKRVL------------------SVDGSHP 388
           SGC+S G    A+ L       G+E    T+  VL                  SV     
Sbjct: 491 SGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLI 550

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            +  + NAL+DMY+ C        +F ++  KN  V +WT MI SY + G  +    L  
Sbjct: 551 GETSLANALLDMYSNCSDWQSTNQIFRSMGQKN--VVSWTAMITSYMRAGLFDKVAGLLQ 608

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M      ++P+ F ++ AL A A   +L+ G+ +H Y +RN  E L+P VAN L++MY 
Sbjct: 609 EMVLDG--IRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLP-VANALMEMYV 665

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           +  +++ AR++FD +  ++V+SW +L+ GY  +   +++   F  M  +   P+ VT   
Sbjct: 666 KCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTC 724

Query: 569 LLYACSHSGMVDQG 582
           +L A +    +++G
Sbjct: 725 ILPAAASISSLERG 738


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 307/895 (34%), Positives = 465/895 (51%), Gaps = 120/895 (13%)

Query: 42  LLLRQC---KSLTQVYLIHQQIIVQNLTH-----VPPSHLIAAYVSHNAPSPALSLLQRI 93
           LLL+ C   K +     +H+   V + TH     V  + LI  Y    +P  +  +   +
Sbjct: 48  LLLQACGNQKDIETGRRLHK--FVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNM 105

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSR 152
                ++  WNAL+    R  L  +  ++F+ ++    + PD +TFP V+KACG +   R
Sbjct: 106 ETK--NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVR 163

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G  +H ++   G   +VFV NAL+ MY +C  +  A ++FD  F P   ++VSWN+++ 
Sbjct: 164 LGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFD--FMPET-NLVSWNSMIC 220

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG------------- 259
           A++++G +     L   M G+  +  D V++V  L  CA  G    G             
Sbjct: 221 AFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLS 280

Query: 260 -------------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                         +CG + EA+  F +   K+VVSWN M++ +S  G   +AF L ++M
Sbjct: 281 EEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 307 --RQENVKLNVVTW----------------------------------SAVIAGYAQRGH 330
             + E +K N VT                                   +A I  YA+ G 
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGA 400

Query: 331 GHEALDVFR-------------------------------QMQFCGLEPNVVTLVSLLSG 359
            + A  VF                                QM + G +P+  T+ SLL  
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA + +L  GKE H Y ++  L        D  V  +L+  Y  C     ARV+FD +  
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLET------DFFVGTSLLSHYIHCGKASSARVLFDRM-- 512

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           K++++ +W  MI  YSQNG   ++LALF +   +   ++ +   +     AC++L+ALR 
Sbjct: 513 KDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEG--IQSHEIAIVSVFGACSQLSALRL 570

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G++ H YVL+   +    FV   +IDMY++SG I  +R VFD LK +NV SW +++  +G
Sbjct: 571 GKEAHGYVLK-ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHG 629

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           +HG G +A   +++M+K G  PD  T++ +L AC H+G+V++GLKYF  M     I  + 
Sbjct: 630 IHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKL 689

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           EHYAC++D+L RA RLD+A+ L+  MP E    IW +LL  CR    +E+GE  A +LLE
Sbjct: 690 EHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLE 749

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           LE +K  +Y LLSN+YA  G+W  V R+R +MK  G++K  GCSW++      +F VGD 
Sbjct: 750 LEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDS 809

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
             P+S +I  I   L +RI  +GY P TS  LH+V +EEK D+L  HSEKLA+++G+L T
Sbjct: 810 LQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKT 869

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             GT +RI KNLRIC DCH+A   IS  +  EI++RD+ RFHHF++G C+C  YW
Sbjct: 870 TKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 295/793 (37%), Positives = 432/793 (54%), Gaps = 98/793 (12%)

Query: 46  QCKSLTQVYLIHQQII-VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           + KS +Q   +H Q I  Q+L+H   S +I+ Y +      AL L + +   P  V  W 
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPP--VLAWK 74

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ++IR      L   A   F++M   G  PD   FP VLK+C  +   R G SVH  I   
Sbjct: 75  SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 165 GFDSNVFVCNALMAMYARCDTLSY---ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
           G D +++  NALM MYA+   +        +FDEM Q                + SGD +
Sbjct: 135 GMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQ--------------RTSNSGDED 180

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
                                 V A +     G          ++  ++VFE M  KDVV
Sbjct: 181 ----------------------VKAETCIMPFG----------IDSVRRVFEVMPRKDVV 208

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           S+N                                    +IAGYAQ G   +AL + R+M
Sbjct: 209 SYNT-----------------------------------IIAGYAQSGMYEDALRMVREM 233

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
               L+P+  TL S+L   +    ++ GKE H Y I++ +        D+ + ++L+DMY
Sbjct: 234 GTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGID------SDVYIGSSLVDMY 287

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK   ++ +  +F  +    RD  +W  ++  Y QNG  N+AL LF QM      VKP A
Sbjct: 288 AKSARIEDSERVFSRLYC--RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAK--VKPGA 343

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
              S  + ACA LA L  G+Q+H YVLR  +   I F+A+ L+DMYS+ G+I  AR +FD
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI-FIASALVDMYSKCGNIKAARKIFD 402

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +   + VSWT+++ G+ +HG G +A   F++M+++G+ P+ V F+ +L ACSH G+VD+
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
              YF+SM+K +G++   EHYA + DLLGRA +L+EA   I  M +EPT  +W  LL+ C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
            +H N+EL E  A ++  ++SE  G+Y L+ N+YA+ GRWK++A++R  M+  G++K+P 
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPA 582

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSW++ K  T  F  GDR+HP   KI E L  ++++++  GYV  TS  LHDVD+E K +
Sbjct: 583 CSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRE 642

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LLF HSE+LA+A+GI+ T PGT IR+TKN+RIC DCH AI FIS I   EII+RD++RFH
Sbjct: 643 LLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFH 702

Query: 822 HFKEGSCTCKGYW 834
           HF  G+C+C  YW
Sbjct: 703 HFNRGNCSCGDYW 715


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/762 (36%), Positives = 428/762 (56%), Gaps = 61/762 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I    R+     A+ +F +M R G  PD+  F   L A   L +     S+  +  
Sbjct: 192 WTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLAL 251

Query: 163 SSGFDSNVFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            +GF+ +V +  A++ +Y+R    L  A + F+ M +    +  +W+T++AA +  G  +
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER---NEYTWSTMIAALSHGGRID 308

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + ++ R    VK      +L+  L+            QCG +++A+ +FE++    VV
Sbjct: 309 AAIAVYER--DPVKSIACRTALITGLA------------QCGRIDDARILFEQIPEPIVV 354

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNA++TGY + G   +A  LF KM   N     ++W+ +IAGYAQ G   EAL + +++
Sbjct: 355 SWNALITGYMQNGMVNEAKELFDKMPFRNT----ISWAGMIAGYAQNGRSEEALGLLQEL 410

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+ P++ +L S+   C+++ AL  G + H   +K     +          NALI MY
Sbjct: 411 HRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNS------FACNALITMY 464

Query: 402 AKCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIG 432
            KC++++ AR +F  +  K+                             RD  +WT +I 
Sbjct: 465 GKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIIS 524

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           +Y+    +N+A+  F  MF + +L  PN+  L+  L  C  L A + G+QIH   ++   
Sbjct: 525 AYAHAEQSNEAMGAFKTMFCEHEL--PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGM 582

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +  +  VAN LI MY + G  D+ R+ FD +++R++ +W +++TGY  HGLG +A   + 
Sbjct: 583 DSEL-IVANALISMYFKCGCADSRRI-FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQ 640

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M   G+ P+ VTF+ LL ACSH+G+VD+G K+F SMS+++G++   EHYAC+VDLLGR 
Sbjct: 641 HMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRT 700

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             +  A + I  MP+EP  +IW ALL  C+IH N E+G+ AA +L  +E    G+Y +LS
Sbjct: 701 GDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLS 760

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIY++ G W +VA +R +MK  GV K PGCSW Q K+   +F  GD+ H Q ++I   L 
Sbjct: 761 NIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLE 820

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   +KA GYVP T F LHD+D+E+K   L  HSEKLA+AY +L T  G PI+I KNLR
Sbjct: 821 ELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLR 880

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH+ I F+S +   +I +RD NRFHHF+ GSC+C+ +W
Sbjct: 881 ICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 252/529 (47%), Gaps = 59/529 (11%)

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-- 230
           C+A +    R   +  AR++FD M +    DI++WN++++AY  +G  +    L+  +  
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRR---DIIAWNSMISAYCHNGMPDAARDLYDAISG 93

Query: 231 ----TGDVKVQG--------------DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
               TG + + G              DG+   N ++  A +  +    Q G +  A+++F
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYV---QNGDITMARRLF 150

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           + M  +DV SWN+M+TGY       DA  LF+KM +     N+V+W+ +I+GY +  +  
Sbjct: 151 DAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPER----NLVSWTVMISGYGRIENHG 206

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           +A D+F +M   GL P+     S LS    +G L + +        RVL++      D++
Sbjct: 207 KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL------RVLALKTGFERDVV 260

Query: 393 VINALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +  A++++Y++  SV D A   F+++  +N    TW+ MI + S  G  + A+A+    +
Sbjct: 261 IGTAILNVYSRDTSVLDTAIKFFESMIERNE--YTWSTMIAALSHGGRIDAAIAV----Y 314

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           ++D +      +++C       LA  + GR   A +L  Q    I    N LI  Y ++G
Sbjct: 315 ERDPVK-----SIACRTALITGLA--QCGRIDDARILFEQIPEPIVVSWNALITGYMQNG 367

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ++ A+ +FD +  RN +SW  ++ GY  +G  ++A     ++ + G+ P   +   + +
Sbjct: 368 MVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFF 427

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEP 629
           ACS+   ++ G +      K   +  +   +AC  ++ + G+   ++ A ++   M  + 
Sbjct: 428 ACSNIVALETGTQVHSLAVK---VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
             + W + L         +L + A N    + S  D S+T + + YA+A
Sbjct: 485 I-VSWNSFLAAL---VQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/762 (36%), Positives = 428/762 (56%), Gaps = 61/762 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I    R+     A+ +F +M R G  PD+  F   L A   L +     S+  +  
Sbjct: 192 WTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLAL 251

Query: 163 SSGFDSNVFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            +GF+ +V +  A++ +Y+R    L  A + F+ M +    +  +W+T++AA +  G  +
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER---NEYTWSTMIAALSHGGRID 308

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + ++ R    VK      +L+  L+            QCG +++A+ +FE++    VV
Sbjct: 309 AAIAVYER--DPVKSIACRTALITGLA------------QCGRIDDARILFEQIPEPIVV 354

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNA++TGY + G   +A  LF KM   N     ++W+ +IAGYAQ G   EAL + +++
Sbjct: 355 SWNALITGYMQNGMVNEAKELFDKMPFRNT----ISWAGMIAGYAQNGRSEEALGLLQEL 410

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+ P++ +L S+   C+++ AL  G + H   +K     +          NALI MY
Sbjct: 411 HRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNS------FACNALITMY 464

Query: 402 AKCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIG 432
            KC++++ AR +F  +  K+                             RD  +WT +I 
Sbjct: 465 GKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIIS 524

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           +Y+    +N+A+  F  MF + +L  PN+  L+  L  C  L A + G+QIH   ++   
Sbjct: 525 AYAHAEQSNEAMGAFKTMFCEHEL--PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGM 582

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +  +  VAN LI MY + G  D+ R+ FD +++R++ +W +++TGY  HGLG +A   + 
Sbjct: 583 DSEL-IVANALISMYFKCGCADSRRI-FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQ 640

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M   G+ P+ VTF+ LL ACSH+G+VD+G K+F SMS+++G++   EHYAC+VDLLGR 
Sbjct: 641 HMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRT 700

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             +  A + I  MP+EP  +IW ALL  C+IH N E+G+ AA +L  +E    G+Y +LS
Sbjct: 701 GDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLS 760

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIY++ G W +VA +R +MK  GV K PGCSW Q K+   +F  GD+ H Q ++I   L 
Sbjct: 761 NIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLE 820

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   +KA GYVP T F LHD+D+E+K   L  HSEKLA+AY +L T  G PI+I KNLR
Sbjct: 821 ELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLR 880

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH+ I F+S +   +I +RD NRFHHF+ GSC+C+ +W
Sbjct: 881 ICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 252/529 (47%), Gaps = 59/529 (11%)

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-- 230
           C+A +    R   +  AR++FD M +    DI++WN++++AY  +G  +    L+  +  
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRR---DIIAWNSMISAYCHNGMPDAARDLYDAISG 93

Query: 231 ----TGDVKVQG--------------DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
               TG + + G              DG+   N ++  A +  +    Q G +  A+++F
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYV---QNGDITMARRLF 150

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           + M  +DV SWN+M+TGY       DA  LF+KM +     N+V+W+ +I+GY +  +  
Sbjct: 151 DAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPER----NLVSWTVMISGYGRIENHG 206

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           +A D+F +M   GL P+     S LS    +G L + +        RVL++      D++
Sbjct: 207 KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL------RVLALKTGFERDVV 260

Query: 393 VINALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +  A++++Y++  SV D A   F+++  +N    TW+ MI + S  G  + A+A+    +
Sbjct: 261 IGTAILNVYSRDTSVLDTAIKFFESMIERNE--YTWSTMIAALSHGGRIDAAIAV----Y 314

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           ++D +      +++C       LA  + GR   A +L  Q    I    N LI  Y ++G
Sbjct: 315 ERDPVK-----SIACRTALITGLA--QCGRIDDARILFEQIPEPIVVSWNALITGYMQNG 367

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ++ A+ +FD +  RN +SW  ++ GY  +G  ++A     ++ + G+ P   +   + +
Sbjct: 368 MVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFF 427

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEP 629
           ACS+   ++ G +      K   +  +   +AC  ++ + G+   ++ A ++   M  + 
Sbjct: 428 ACSNIVALETGTQVHSLAVK---VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
             + W + L         +L + A N    + S  D S+T + + YA+A
Sbjct: 485 I-VSWNSFLAAL---VQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 290/736 (39%), Positives = 439/736 (59%), Gaps = 27/736 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V+ WN++I   V       A   F Q++      PD YTFP VLKACG L   R    +H
Sbjct: 182 VYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGR---RIH 238

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 GF  NVFV  +L+ MY+R      AR LFD+M      D+ SWN +++   Q+G
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM---PFRDMGSWNAMISGLIQNG 295

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           +A   L +   M  +  ++ + V++V+ L  C  LG  S      M+     +   ++  
Sbjct: 296 NAAQALDVLDEMRLE-GIKMNFVTVVSILPVCPQLGDIS----TAMLIHLYVIKHGLEFD 350

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
             VS NA++  Y++ G+ EDA   F++M       +VV+W+++IA Y Q      A   F
Sbjct: 351 LFVS-NALINMYAKFGNLEDARKAFQQM----FITDVVSWNSIIAAYEQNDDPVTAHGFF 405

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +MQ  G +P+++TLVSL S  A        +  H + ++R     G   +D+++ NA++
Sbjct: 406 VKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRR-----GWLMEDVVIGNAVV 460

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAK   +D A  +F+ I  K  DV +W  +I  Y+QNG A++A+ ++ +M ++ K + 
Sbjct: 461 DMYAKLGLLDSAHKVFEIILVK--DVISWNTLITGYAQNGLASEAIEVY-KMMEECKEII 517

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  T    L A A + AL+ G +IH  V++    + + FVA CLID+Y + G +  A  
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDV-FVATCLIDVYGKCGRLVDAMS 576

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F  + Q + V+W ++++ +G+HG  +K    F +M  EG+ PD VTF+ LL ACSHSG 
Sbjct: 577 LFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 636

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G K+   + +E+GI    +HY C+VDLLGRA  L+ A   I+ MP++P   IW ALL
Sbjct: 637 VEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALL 695

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH N+ELG+ A++RL E++S+  G Y LLSNIYAN G+W+ V ++RSL +  G+KK
Sbjct: 696 GACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 755

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG S ++       F+ G+++HP+ ++IYE L  L  ++K++GY+P  SF L DV+++E
Sbjct: 756 TPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDE 815

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSE+LA+A+GI++T P +PIRI KNLR+CGDCH+A  FIS I   EI++RDSN
Sbjct: 816 KEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSN 875

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 876 RFHHFKDGICSCGDYW 891



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 189/418 (45%), Gaps = 28/418 (6%)

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           KV+ +     +V  Y+ +G    +   F ++ Q++V     TW+++I+ Y   GH HEA+
Sbjct: 147 KVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDV----YTWNSMISAYVHNGHFHEAI 202

Query: 336 DVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             F Q+     + P+  T   +L  C   G L+ G+  HC+  K           ++ V 
Sbjct: 203 GCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQW------NVFVA 253

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +LI MY++     +AR +FD +    RD+ +W  MI    QNG A  AL +  +M  + 
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMP--FRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             +K N  T+   L  C +L  +     IH YV+++  E  + FV+N LI+MY++ G+++
Sbjct: 312 --IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL-FVSNALINMYAKFGNLE 368

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR  F  +   +VVSW S++  Y  +     AH  F +M+  G  PD +T + L    +
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            S            + +   +         +VD+  +   LD A ++ E + ++   I W
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDV-ISW 487

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKD-----GSYTLLSNIYANAGRWKDVARI 687
             L+ G   +A   L   A      +E  K+     G++  +   YA+ G  +   RI
Sbjct: 488 NTLITG---YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI 542


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 292/772 (37%), Positives = 417/772 (54%), Gaps = 116/772 (15%)

Query: 132 HPDE--YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           +PDE    +  +L+ C +L + R G  VHA +  +G D   F+ + L+ +Y +   +  A
Sbjct: 5   NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 64

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R++FD+M +    ++ SW  I+  Y   GD E  + LF  M  +  V+ D         A
Sbjct: 65  RRMFDKMSER---NVFSWTAIMEMYCGLGDYEETIKLFYLMVNE-GVRPDHFVFPKVFKA 120

Query: 250 CASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSW 283
           C+ L  +  GK                          +CG M+ A++ FE ++ KDV  W
Sbjct: 121 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 180

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N MV                                   +GY  +G   +AL+VFR+M  
Sbjct: 181 NIMV-----------------------------------SGYTSKGEFKKALNVFRKMVL 205

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G++PN +T+ S +S C ++  L  G+E H Y IK V  +D     DL+V N+L+D YAK
Sbjct: 206 EGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK-VEELDS----DLLVGNSLVDYYAK 260

Query: 404 CKSVDVARVMFDAIAPKN-----------------------------------------R 422
           C+SV+VAR  F  I   +                                         R
Sbjct: 261 CRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTR 320

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           DV  W  +I + +Q+G + +AL L  +M   +  V+ N  T+  AL AC++LAALR G++
Sbjct: 321 DVVVWNSIISACAQSGRSVNALDLLREMNLSN--VEVNTVTMVSALPACSKLAALRQGKE 378

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           IH +++R   +    F+ N LIDMY R G I  +R +FD + QR++VSW  +++ YGMHG
Sbjct: 379 IHQFIIRCGLDT-CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHG 437

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
            G  A   F Q R  GL P+ +TF  LL ACSHSG++++G KYF  M  E+ +    E Y
Sbjct: 438 FGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 497

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           AC+VDLL RA + +E +E IE MP EP   +W +LL  CRIH N +L E AA  L ELE 
Sbjct: 498 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP 557

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           +  G+Y L++NIY+ AGRW+D A+IR LMK  GV K PGCSW++ K    +F VGD +HP
Sbjct: 558 QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHP 617

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
             ++I   +  L   IK +GYVP T+F L DVD++EK   L  HSEK+ALA+G+++T  G
Sbjct: 618 LMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAG 677

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           TP+RI KNLR+CGDCHSA  FIS +   +II+RD+ RFHHF +G C+C  YW
Sbjct: 678 TPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 165/564 (29%), Positives = 279/564 (49%), Gaps = 65/564 (11%)

Query: 33  TTP--CIKITSLLLRQCKSLTQVYL---IHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSP 85
           T P  CI+I + +L++C+ L  + L   +H Q++V   ++     S L+  Y        
Sbjct: 4   TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 63

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +  ++S    +VF W A++     L   +   +LF  M+  G  PD + FP V KAC
Sbjct: 64  ARRMFDKMSER--NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 121

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDI 204
            EL + R G  V+  + S GF+ N  V  +++ M+ +C  +  AR+ F+E+ F+    D+
Sbjct: 122 SELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK----DV 177

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--- 261
             WN +V+ Y   G+ +  L +F +M  +  V+ + +++ +A+SAC +L     G++   
Sbjct: 178 FMWNIMVSGYTSKGEFKKALNVFRKMVLE-GVKPNSITIASAVSACTNLSLLRHGREIHG 236

Query: 262 ------------------------CGMMEEAKKVFERMKVKDVVSWNAM--VTGYSRIGS 295
                                   C  +E A++ F  +K  D+VSWNAM  VTG+++ G 
Sbjct: 237 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGD 296

Query: 296 FEDAFALFKKMR------QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
            + A   F++M        E    +VV W+++I+  AQ G    ALD+ R+M    +E N
Sbjct: 297 GKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 356

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            VT+VS L  C+ + AL  GKE H + I+  L           ++N+LIDMY +C S+  
Sbjct: 357 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN------FILNSLIDMYGRCGSIQK 410

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +R +FD + P+ RD+ +W VMI  Y  +G   DA+ LF Q   +   +KPN  T +  L 
Sbjct: 411 SRRIFD-LMPQ-RDLVSWNVMISVYGMHGFGMDAVNLFQQF--RTMGLKPNHITFTNLLS 466

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QR 526
           AC+    +  G + +  +++ +Y M  P V    C++D+ SR+G  +      + +  + 
Sbjct: 467 ACSHSGLIEEGWK-YFKMMKTEYAM-DPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEP 524

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWA 550
           N   W SL+    +H   D A +A
Sbjct: 525 NAAVWGSLLGACRIHCNPDLAEYA 548


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/706 (40%), Positives = 417/706 (59%), Gaps = 26/706 (3%)

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  P   TF  +LK C        G +VHA + + G         AL  MYA+C     A
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R++FD M  P   D V+WN +VA YA++G AE  + +  RM  +   + D V+LV+ L A
Sbjct: 280 RRVFDRM--PAR-DRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPA 336

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN-AMVTGYSRIGSFEDAFALFKKMRQ 308
           CA        +  G   E      R    + V+ + A++  Y + G+ + A  +F  M+ 
Sbjct: 337 CAD------AQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQD 390

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            N     V+W+A+I GYA+ G   EAL +F++M   G++   V++++ L  C  +G L  
Sbjct: 391 RNS----VSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDE 446

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G+  H   ++  L        ++ V+NALI MY KCK  D+A  +FD +  K R   +W 
Sbjct: 447 GRRVHELLVRIGLE------SNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR--VSWN 498

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI   +QNG + DA+ LF +M  Q + VKP++FTL   + A A ++     R IH Y +
Sbjct: 499 AMILGCTQNGSSEDAVRLFSRM--QLENVKPDSFTLVSIIPALADISDPLQARWIHGYSI 556

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           R   +  + +V   LIDMY++ G +  AR +F++ + R+V++W +++ GYG HG G  A 
Sbjct: 557 RLHLDQDV-YVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F++M+  G  P+  TFL +L ACSH+G+VD+G +YF SM +++G+    EHY  +VDL
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGRA +L EA   I+ MPMEP   ++ A+L  C++H NVEL E +A R+ ELE E+   +
Sbjct: 676 LGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYH 735

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LL+NIYANA  WKDVAR+R+ M+  G++K PG S VQ K    TF+ G   H Q++ IY
Sbjct: 736 VLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIY 795

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
             LA L++ IKA+GYVP T  ++HDV+D+ K  LL  HSEKLA+AYG++ TAPGT I+I 
Sbjct: 796 ARLAKLIEEIKAVGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIK 854

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCH+A   IS++   EII+RD  RFHHFK+G C+C  YW
Sbjct: 855 KNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 236/537 (43%), Gaps = 87/537 (16%)

Query: 35  PCIKITSLLLRQCKS---LTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSL 89
           P ++  + LL+ C +   L     +H Q+  + L+   +  + L   Y     P  A  +
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRV 282

Query: 90  LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGEL 148
             R+ P+   V W NAL+    R  L + A  + ++M    G  PD  T   VL AC + 
Sbjct: 283 FDRM-PARDRVAW-NALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADA 340

Query: 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
            +      VHA     GFD  V V  A++ +Y +C  +  AR++FD M      + VSWN
Sbjct: 341 QALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDR---NSVSWN 397

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------- 260
            ++  YA++GDA   L LF RM G+  V    VS++ AL AC  LG    G+        
Sbjct: 398 AMIKGYAENGDATEALALFKRMVGE-GVDVTDVSVLAALHACGELGFLDEGRRVHELLVR 456

Query: 261 ------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
                             +C   + A +VF+ +  K  VSWNAM+ G ++ GS EDA  L
Sbjct: 457 IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRL 516

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F +M+ ENVK                                   P+  TLVS++   A 
Sbjct: 517 FSRMQLENVK-----------------------------------PDSFTLVSIIPALAD 541

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           +   L  +  H Y+I+  L +D     D+ V+ ALIDMYAKC  V +AR +F+  + ++R
Sbjct: 542 ISDPLQARWIHGYSIR--LHLD----QDVYVLTALIDMYAKCGRVSIARSLFN--SARDR 593

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
            V TW  MI  Y  +G    A+ LF +M    K+  PN  T    L AC+    +  G++
Sbjct: 594 HVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV--PNETTFLSVLSACSHAGLVDEGQE 651

Query: 483 IHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             +  ++  Y  L P + +   ++D+  R+G +  A      +     +S    M G
Sbjct: 652 YFSS-MKEDYG-LEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLG 706



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 181/354 (51%), Gaps = 14/354 (3%)

Query: 326 AQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           A R     AL  F  M    G  P + T  SLL  CA+   L  G+  H     R LS +
Sbjct: 200 ASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPE 259

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                  +   AL +MYAKC+    AR +FD +  ++R    W  ++  Y++NG A  A+
Sbjct: 260 A------LAATALANMYAKCRRPGDARRVFDRMPARDR--VAWNALVAGYARNGLAEAAV 311

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            +  +M ++D   +P+A TL   L ACA   AL   R++HA+ +R  ++  +  V+  ++
Sbjct: 312 GMVVRMQEEDG-ERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVN-VSTAIL 369

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           D+Y + G +D+AR VFD ++ RN VSW +++ GY  +G   +A   F +M  EG+    V
Sbjct: 370 DVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDV 429

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           + L  L+AC   G +D+G +  + + +  G+ +       ++ +  +  R D A ++ + 
Sbjct: 430 SVLAALHACGELGFLDEGRRVHELLVR-IGLESNVNVMNALITMYCKCKRTDLAAQVFDE 488

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
           +  + T + W A++ GC  + + E      +R ++LE+ K  S+TL+S I A A
Sbjct: 489 LGYK-TRVSWNAMILGCTQNGSSEDAVRLFSR-MQLENVKPDSFTLVSIIPALA 540


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 309/859 (35%), Positives = 467/859 (54%), Gaps = 72/859 (8%)

Query: 21  HLFTNIKLFSVTTTP-------CIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH-VPPSH 72
           HL   +   + TT P       C K T   L+ CK++ ++ + H+ +  Q L + V    
Sbjct: 9   HLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTIT 68

Query: 73  LIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
            + A         +LS  + +   S S  + F +N+LIR      L + A  LFL+MM  
Sbjct: 69  KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNS 128

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  PD+YTFPF L AC +  +   G  +H +I   G+  ++FV N+L+  YA C  L  A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R++FDEM +    ++VSW +++  YA+   A+  + LF RM  D +V  + V++V  +SA
Sbjct: 189 RKVFDEMSER---NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISA 245

Query: 250 CASLGTWSRGKQCGMMEEAKKVF-----ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           CA L           +E  +KV+       ++V D++  +A+V  Y +  + + A  LF 
Sbjct: 246 CAKLED---------LETGEKVYAFIRNSGIEVNDLMV-SALVDMYMKCNAIDVAKRLFD 295

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +    N+ L     +A+ + Y ++G   EAL VF  M   G+ P+ ++++S +S C+ + 
Sbjct: 296 EYGASNLDL----CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLR 351

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            +L GK  H Y ++     +G    D  + NALIDMY KC   D A  +FD ++  N+ V
Sbjct: 352 NILWGKSCHGYVLR-----NGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMS--NKTV 403

Query: 425 ATWTVMIGSYSQNGGANDALALFPQM------------------------------FQQD 454
            TW  ++  Y +NG  + A   F  M                               Q  
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           + V  +  T+     AC  L AL   + I+ Y+ +N  ++ +  +   L+DM+SR GD +
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVR-LGTTLVDMFSRCGDPE 522

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           +A  +F++L  R+V +WT+ +    M G  ++A   FD M ++GL PDGV F+  L ACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H G+V QG + F SM K  G+S    HY C+VDLLGRA  L+EAV+LIE MPMEP  +IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            +LL  CR+  NVE+   AA ++  L  E+ GSY LLSN+YA+AGRW D+A++R  MK  
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PG S +Q +  T  F  GD +HP+   I  +L  + QR   +G+VP  S  L DV
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           D++EK  +L  HSEKLA+AYG++++  GT IRI KNLR+C DCHS   F S + N EIIL
Sbjct: 763 DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIIL 822

Query: 815 RDSNRFHHFKEGSCTCKGY 833
           RD+NRFH+ ++G C+C  +
Sbjct: 823 RDNNRFHYIRQGKCSCGDF 841


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 294/792 (37%), Positives = 457/792 (57%), Gaps = 37/792 (4%)

Query: 43  LLRQCKSLTQVYLIHQQIIV----QNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           L   C ++     +H  ++V    QN+  V  + LI  YV+H   S + S    I     
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNI--VLSTKLINLYVTHGDISLSRSTFDYIHKK-- 83

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQM--MRRGWH--PDEYTFPFVLKACGELPSSRCG 154
           ++F WN++I   VR      A     Q+  M  G H  PD YTFP +LKAC  L     G
Sbjct: 84  NIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---G 140

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH  +   GF+ +VFV  +L+ +Y+R   L  A ++F +M    + D+ SWN +++ +
Sbjct: 141 KKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM---PVKDVGSWNAMISGF 197

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            Q+G+A G L +  RM G+  V+ D +++ + L  CA       G    +      V + 
Sbjct: 198 CQNGNAAGALGVLNRMKGE-GVKMDTITVASILPVCAQSDDVINGVLIHL-----HVLKH 251

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   NA++  YS+ G  +DA  +F +M   ++    V+W+++IA Y Q      A
Sbjct: 252 GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL----VSWNSIIAAYEQNNDPSTA 307

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L  F+ MQ  G+ P+++T+VSL S  + +    + +    + I+R          D+++ 
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWL-----DKDVVIG 362

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NAL++MYAK   ++ A  +FD +  K  D  +W  ++  Y+QNG A++A+  +  M ++ 
Sbjct: 363 NALVNMYAKLGYMNCAHTVFDQLPRK--DTISWNTLVTGYTQNGLASEAIDAY-NMMEEC 419

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           +   PN  T    + A + + AL+ G +IHA +++N   + + FVA CLID+Y + G ++
Sbjct: 420 RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV-FVATCLIDLYGKCGRLE 478

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A  +F  + +   V W +++   G+HG G++A   F  M  E +  D +TF+ LL ACS
Sbjct: 479 DAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+VD+G K FD M KE+GI    +HY C+VDLLGRA  L++A EL+  MP++P   IW
Sbjct: 539 HSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIW 598

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ C+I+ N ELG LA++RLLE++SE  G Y LLSNIYAN  +W+ V ++RSL +  
Sbjct: 599 GALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDR 658

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PG S V        F+ G++THP+  +IY+ L  L  ++K++GYVP  SF   D+
Sbjct: 659 GLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDI 718

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           +++EK  +L  HSE+LA+A+GI++T P +PIRI KNLR+CGDCH+A  +IS I   EI++
Sbjct: 719 EEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVV 778

Query: 815 RDSNRFHHFKEG 826
           RDSNRFHHFK+G
Sbjct: 779 RDSNRFHHFKDG 790


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/732 (38%), Positives = 418/732 (57%), Gaps = 25/732 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W ++I    R R    A  LF  M   G  PD+  F  +LKAC    +   G  VHA + 
Sbjct: 274 WTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK 333

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G D+ ++V  AL++MY +C ++  A ++F+ +      ++VSW  ++A +AQ G  E 
Sbjct: 334 EVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR---NVVSWTAMIAGFAQHGRMEE 390

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             + F +M  +  ++ + V+ ++ L AC+      +G+Q        ++ +   + D   
Sbjct: 391 AFLFFNKMI-ESGIEPNRVTFMSILGACSRPSALKQGRQI-----HDRIIKAGYITDDRV 444

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             A+++ Y++ GS  DA  +F+++ ++NV    V W+A+I  Y Q      A+  F+ + 
Sbjct: 445 RTALLSMYAKCGSLMDARNVFERISKQNV----VAWNAMITAYVQHEKYDNAVATFQALL 500

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G++P+  T  S+L+ C S  AL LGK      I+           DL + NAL+ M+ 
Sbjct: 501 KEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR------AGFESDLHIRNALVSMFV 554

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            C  +  A  +F+ +    RD+ +W  +I  + Q+G    A   F  M  Q+  VKP+  
Sbjct: 555 NCGDLMSAMNLFNDMP--ERDLVSWNTIIAGFVQHGENQFAFDYFKMM--QESGVKPDQI 610

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L ACA   AL  GR++HA +     +  +  V   LI MY++ G ID A +VF N
Sbjct: 611 TFTGLLNACASPEALTEGRRLHALITEAALDCDV-VVGTGLISMYTKCGSIDDAHLVFHN 669

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L ++NV SWTS++TGY  HG G +A   F QM++EG+ PD +TF+  L AC+H+G++ +G
Sbjct: 670 LPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG 729

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F+SM K+F I  R EHY C+VDL GRA  L EAVE I  M ++P   +W ALL  C+
Sbjct: 730 LHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQ 788

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H +VEL E  A + LEL+   DG Y +LSNIYA AG WK+V ++R +M   GV K+PG 
Sbjct: 789 VHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQ 848

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++       F   D+THPQ ++I+  L  L   +K +GYVP T + LHDV+D EK   
Sbjct: 849 SWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHA 908

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSE+LA+AYG+L T P TPI I+KNLR+CGDCH+A   IS I   +II RDSNRFHH
Sbjct: 909 LCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHH 968

Query: 823 FKEGSCTCKGYW 834
           FK+G C+C  +W
Sbjct: 969 FKDGVCSCGDFW 980



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 242/535 (45%), Gaps = 78/535 (14%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           T+  +L+ C +  +   G  +H  I  S    ++F+ N L++MYA+C   + A+Q+FDEM
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
                 D+ SWN ++  Y Q    E    L  +M  D  V+ D  + V  L+ACA     
Sbjct: 166 PDK---DVYSWNLLLGGYVQHRRYEEAFRLHEQMVQD-GVKPDKYTFVYMLNACADAKNV 221

Query: 257 SRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
            +G +                          CG +++A KVF  +  +D+++W +M+TG 
Sbjct: 222 DKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGL 281

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           +R   F+ A  LF+ M +E                                   G++P+ 
Sbjct: 282 ARHRQFKQACNLFQVMEEE-----------------------------------GVQPDK 306

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
           V  VSLL  C    AL  GK  H    +  L        ++ V  AL+ MY KC S++ A
Sbjct: 307 VAFVSLLKACNHPEALEQGKRVHARMKEVGLDT------EIYVGTALLSMYTKCGSMEDA 360

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
             +F+ +  K R+V +WT MI  ++Q+G   +A   F +M +    ++PN  T    L A
Sbjct: 361 LEVFNLV--KGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG--IEPNRVTFMSILGA 416

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           C+R +AL+ GRQIH  +++  Y +    V   L+ MY++ G +  AR VF+ + ++NVV+
Sbjct: 417 CSRPSALKQGRQIHDRIIKAGY-ITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA 475

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++T Y  H   D A   F  + KEG+ PD  TF  +L  C     ++ G K+  S+ 
Sbjct: 476 WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLI 534

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
              G  +       +V +      L  A+ L   MP E   + W  ++ G   H 
Sbjct: 535 IRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHG 588



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 134/499 (26%), Positives = 221/499 (44%), Gaps = 85/499 (17%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y    +   AL +   +     +V  W A+I    +    + AF  F +M+  G  
Sbjct: 347 LLSMYTKCGSMEDALEVFNLVKGR--NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIE 404

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF  +L AC    + + G  +H  I  +G+ ++  V  AL++MYA+C +L  AR +
Sbjct: 405 PNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNV 464

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F+ + +    ++V+WN ++ AY Q    +  +  F  +  +  ++ D  +  + L+ C S
Sbjct: 465 FERISKQ---NVVAWNAMITAYVQHEKYDNAVATFQALLKE-GIKPDSSTFTSILNVCKS 520

Query: 253 -----LGTW---------------------SRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
                LG W                     S    CG +  A  +F  M  +D+VSWN +
Sbjct: 521 PDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTI 580

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G+ + G  + AF  FK M++  VK                                  
Sbjct: 581 IAGFVQHGENQFAFDYFKMMQESGVK---------------------------------- 606

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            P+ +T   LL+ CAS  AL  G+  H    +  L        D++V   LI MY KC S
Sbjct: 607 -PDQITFTGLLNACASPEALTEGRRLHALITEAALDC------DVVVGTGLISMYTKCGS 659

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +D A ++F  +  KN  V +WT MI  Y+Q+G   +AL LF QM Q+   VKP+  T   
Sbjct: 660 IDDAHLVFHNLPKKN--VYSWTSMITGYAQHGRGKEALELFCQMQQEG--VKPDWITFVG 715

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK 524
           AL ACA    ++ G  +H +     +  + P + +  C++D++ R+G +  A V F N  
Sbjct: 716 ALSACAHAGLIKEG--LHHFESMKDFN-IEPRMEHYGCMVDLFGRAGLLHEA-VEFINKM 771

Query: 525 QRNVVS--WTSLMTGYGMH 541
           Q    S  W +L+    +H
Sbjct: 772 QVKPDSRLWGALLGACQVH 790



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 173/349 (49%), Gaps = 19/349 (5%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N    +A +   ++ G   EA+ V   +    ++ +  T  SLL  C     L  G+  H
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            +     +      PD  M  N LI MYAKC + + A+ +FD +  K  DV +W +++G 
Sbjct: 128 NH-----IKFSKIQPDIFM-WNMLISMYAKCGNTNSAKQIFDEMPDK--DVYSWNLLLGG 179

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y Q+    +A  L  QM Q    VKP+ +T    L ACA    +  G ++ + +L   ++
Sbjct: 180 YVQHRRYEEAFRLHEQMVQDG--VKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWD 237

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             + FV   LI+M+ + G +D A  VF+NL +R++++WTS++TG   H    +A   F  
Sbjct: 238 TDL-FVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQV 296

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M +EG+ PD V F+ LL AC+H   ++QG +    M KE G+         ++ +  +  
Sbjct: 297 MEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCG 355

Query: 614 RLDEAVE---LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
            +++A+E   L++G  +    + W A++ G   H  +E   L  N+++E
Sbjct: 356 SMEDALEVFNLVKGRNV----VSWTAMIAGFAQHGRMEEAFLFFNKMIE 400


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/763 (37%), Positives = 430/763 (56%), Gaps = 64/763 (8%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            W  +I   V +     A+ +F++M R    PD+  F  VL A   L       S+  +  
Sbjct: 329  WMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAI 388

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             +G++ +V V +A++  Y R  +L  A   F+ M +    +  SW T++AA+AQ G  + 
Sbjct: 389  KTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER---NEYSWTTMIAAFAQCGRLDD 445

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             + L+ R      V    V+   A+    +        Q G +++A+ +F+ +   +VV+
Sbjct: 446  AIQLYER------VPEQTVATKTAMMTAYA--------QVGRIQKARLIFDEILNPNVVA 491

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            WNA++ GY++ G  ++A  LF+KM  +N      +W+A+IAG+ Q     EAL++  ++ 
Sbjct: 492  WNAIIAGYTQNGMLKEAKDLFQKMPVKNS----ASWAAMIAGFVQNEESREALELLIELH 547

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              G  P+  +  S LS CA++G + +G+  H   IK     +        V+N LI MYA
Sbjct: 548  RSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS------YVMNGLISMYA 601

Query: 403  KCKSV-------------------------------DVARVMFDAIAPKNRDVATWTVMI 431
            KC +V                               D ARV+F+ + PK RDV +WT +I
Sbjct: 602  KCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKM-PK-RDVVSWTAII 659

Query: 432  GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             +Y Q G    AL LF  M  +   +KPN  T++  L AC  L A++ G Q HA + +  
Sbjct: 660  SAYVQAGHGEVALDLFLDMLARG--IKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLG 717

Query: 492  YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            ++  + FV N LI MY + G  D    VF+ + + ++++W +++ G   +GLG +A   F
Sbjct: 718  FDTFL-FVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIF 775

Query: 552  DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +QM  EG+ PD ++FL +L ACSH+G+VD+G  +F+SM++++GI     HY C+VDLLGR
Sbjct: 776  EQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGR 835

Query: 612  ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
            A  L EA  LIE MP++P  +IW ALL  CRIH NVELG+  A RL ++   K  +Y LL
Sbjct: 836  AGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLL 895

Query: 672  SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
            SN++A+ G W  VA IR LMK  G+ K PG SW+Q K     F  GDRTH Q ++IY  L
Sbjct: 896  SNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSAL 955

Query: 732  AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
                   +A GY+P T+F LHDV++E+K + L  HSEKLA+ +GIL+T  G+PI+I KNL
Sbjct: 956  KEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNL 1015

Query: 792  RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            RICGDCH+ + F+S +   +II+RD NRFHHF++GSC+C  YW
Sbjct: 1016 RICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 132/548 (24%), Positives = 257/548 (46%), Gaps = 86/548 (15%)

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           +++F CN  +    R   +  AR++F+EM Q    D+VSWN+++  Y+Q+G  +   +LF
Sbjct: 169 THLFQCNTRIQELGRLGRVEEARRVFNEMIQR---DVVSWNSMINGYSQNGKVDEARLLF 225

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWS-----RGKQCGMMEEAKKVFERMKVKDVVS 282
               G                   ++ TW+       K+ G +EEA++VFE M  ++VVS
Sbjct: 226 DAFVG------------------KNIRTWTILLTGYAKE-GRIEEAREVFESMTERNVVS 266

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENV---------------------------KLNV 315
           WNAM++GY + G  ++A  LF +M ++NV                           + N 
Sbjct: 267 WNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNS 326

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL-LLGKETHC 374
           V+W  +I+GY       EA DVF +M      P+    V +LS    +  L L+G     
Sbjct: 327 VSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGS---- 382

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
               R +++   +  D++V +A+++ Y +  S+D+A   F+ +  +N    +WT MI ++
Sbjct: 383 ---LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNE--YSWTTMIAAF 437

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q G  +DA+ L+ ++ +Q         T +  + A A++  ++  R I         E+
Sbjct: 438 AQCGRLDDAIQLYERVPEQ------TVATKTAMMTAYAQVGRIQKARLIFD-------EI 484

Query: 495 LIPFVA--NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           L P V   N +I  Y+++G +  A+ +F  +  +N  SW +++ G+  +    +A     
Sbjct: 485 LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLI 544

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           ++ + G  P   +F   L AC++ G V+ G +   S++ + G    +     ++ +  + 
Sbjct: 545 ELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISMYAKC 603

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLL 671
             +++   +   + ++ T + W +L++G  +  N  L +  A  + E   ++D  S+T +
Sbjct: 604 GNVEDGSHVFRTIRVKDT-VSWNSLISG--LSENYMLDD--ARVVFEKMPKRDVVSWTAI 658

Query: 672 SNIYANAG 679
            + Y  AG
Sbjct: 659 ISAYVQAG 666



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 135/558 (24%), Positives = 238/558 (42%), Gaps = 98/558 (17%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + NV   NA+++ Y +   L  AR+LFDEM +    ++ SWN++V  Y           L
Sbjct: 261 ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK---NVASWNSVVTGYCHCYRMSEAREL 317

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRG-----KQCGMMEEAKK----------- 270
           F +M      + + VS +  +S    +  +        K C  +    +           
Sbjct: 318 FDQMP-----ERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT 372

Query: 271 ---------VFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                        + +K     DVV  +A++  Y+R GS + A   F+ M +     N  
Sbjct: 373 GLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER----NEY 428

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+ +IA +AQ G   +A+ ++ ++     E  V T  ++++  A VG +          
Sbjct: 429 SWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMMTAYAQVGRIQ--------- 475

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K  L  D     +++  NA+I  Y +   +  A+ +F  +  KN   A+W  MI  + Q
Sbjct: 476 -KARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNS--ASWAAMIAGFVQ 532

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           N  + +AL L  ++ +   +   ++FT   AL ACA +  +  GR IH+  ++   +   
Sbjct: 533 NEESREALELLIELHRSGSVPSDSSFT--SALSACANIGDVEIGRVIHSLAIKTGCQ-FN 589

Query: 497 PFVANCLIDMYSRSGDI-------------------------------DTARVVFDNLKQ 525
            +V N LI MY++ G++                               D ARVVF+ + +
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPK 649

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R+VVSWT++++ Y   G G+ A   F  M   G+ P+ +T   LL AC + G +  G + 
Sbjct: 650 RDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQ 708

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F ++  + G          ++ +  +    ++   + E MP E   I W A+L GC   A
Sbjct: 709 FHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGC---A 763

Query: 646 NVELGELAANRLLELESE 663
              LG+ A     ++E E
Sbjct: 764 QNGLGKEAIKIFEQMEVE 781


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/795 (37%), Positives = 456/795 (57%), Gaps = 30/795 (3%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFS 99
           +LL  C S  ++Y I   II       H+  + +I+ +    + S A  + + +      
Sbjct: 52  VLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELK-LD 110

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V +   L   A    L D A   FL+MM          +  +L+ CGE    + G  +H 
Sbjct: 111 VLYHIMLKGYAKNSSLGD-ALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHG 169

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +I ++GF+SN+FV  A+M++YA+C  +  A ++F+ M      D+VSW T+VA YAQ+G 
Sbjct: 170 LIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHK---DLVSWTTLVAGYAQNGH 226

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
           A+  L L  +M  +   + D V+LV+ L A A +     G+        +  FE +    
Sbjct: 227 AKRALQLVLQMQ-EAGQKPDSVTLVSILPAVADMKALRIGRSIHGYA-FRSGFESL---- 280

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   NA++  Y + GS   A  +FK MR + V    V+W+ +I G AQ G   EA   F 
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGMRSKTV----VSWNTMIDGCAQNGESEEAFATFL 336

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M   G  P  VT++ +L  CA++G L  G   H    K  L +D     ++ V+N+LI 
Sbjct: 337 KMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDK--LKLDS----NVSVMNSLIS 390

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+KCK VD+A  +F+ +   N    TW  MI  Y+QNG   +AL LF  M  Q + +K 
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTN---VTWNAMILGYAQNGCVKEALNLFCMM--QSQGIKL 445

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           + FTL   + A A  +  R  + IH   +R   +  + FV+  L+DMY++ G I TAR +
Sbjct: 446 DCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNV-FVSTALVDMYAKCGAIKTARKL 504

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +++R+V++W +++ GYG HG+G +    F++M+K  + P+ +TFL ++ ACSHSG V
Sbjct: 505 FDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFV 564

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           ++GL  F SM +++ +    +HY+ +VDLLGRA +LD+A   I+ MP++P   +  A+L 
Sbjct: 565 EEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLG 624

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            C+IH NVELGE AA +L +L+ ++ G + LL+NIYA+   W  VA++R+ M+  G+ K 
Sbjct: 625 ACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKT 684

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PGCSWV+ +    TF+ G   HP+S+KIY  L  L   IKA GYVP    ++HDV+++ K
Sbjct: 685 PGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPD-SIHDVEEDVK 743

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             LL  HSE+LA+A+G+L T+PGT + I KNLR+CGDCH    +IS++   EII+RD  R
Sbjct: 744 KQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRR 803

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK GSC+C  YW
Sbjct: 804 FHHFKNGSCSCGDYW 818


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/726 (39%), Positives = 434/726 (59%), Gaps = 27/726 (3%)

Query: 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
           A R  LP  A   F+ M   G  P   TF  +LK C        G +VHA + + G DS 
Sbjct: 35  AARSDLP-AALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSE 93

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
                AL  MYA+C   + AR++FD M    + D V+WN +VA YA++G A   + +  R
Sbjct: 94  ALAATALANMYAKCRRPADARRVFDRM---PVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNAMVT 288
           M  +   + D ++LV+ L ACA+    +         EA     R  ++++V+   A++ 
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALA------ACREAHAFAIRSGLEELVNVATAILD 204

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y + G    A  +F  M  +N     V+W+A+I GYAQ G   EAL +F +M   G++ 
Sbjct: 205 AYCKCGDIRAARVVFDWMPTKNS----VSWNAMIDGYAQNGDSREALALFNRMVEEGVDV 260

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
             V++++ L  C  +G L  G   H   ++  + +D     ++ V+NALI MY+KCK VD
Sbjct: 261 TDVSVLAALQACGELGCLDEGMRVHELLVR--IGLDS----NVSVMNALITMYSKCKRVD 314

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
           +A  +FD +    R   +W  MI   +QNG + DA+ LF +M  Q + VKP++FTL   +
Sbjct: 315 LASHVFDEL--DRRTQVSWNAMILGCAQNGCSEDAVRLFTRM--QLENVKPDSFTLVSVI 370

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            A A ++     R IH Y +R   +  + +V   LIDMY++ G ++ AR++F++ ++R+V
Sbjct: 371 PALADISDPLQARWIHGYSIRLHLDQDV-YVLTALIDMYAKCGRVNIARILFNSARERHV 429

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           ++W +++ GYG HG G  A   F++M+  G+ P+  TFL +L ACSH+G+VD+G +YF S
Sbjct: 430 ITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTS 489

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M +++G+    EHY  +VDLLGRA +LDEA   I+ MPM+P   ++ A+L  C++H NVE
Sbjct: 490 MKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVE 549

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           L E +A ++ EL  ++   + LL+NIYANA  WKDVAR+R+ M+  G++K PG S +Q K
Sbjct: 550 LAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLK 609

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
               TF+ G   H Q+++IY  LA L++ IKA+GYVP T  ++HDV+D+ K  LL  HSE
Sbjct: 610 NEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVEDDVKAQLLNTHSE 668

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLA+A+G++ TAPGT I+I KNLR+C DCH+A   IS++   EII+RD  RFHHFK+G C
Sbjct: 669 KLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKC 728

Query: 829 TCKGYW 834
           +C  YW
Sbjct: 729 SCGDYW 734



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    +    ++A RLF +M      PD +T   V+ A  ++        +H    
Sbjct: 331 WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSI 390

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               D +V+V  AL+ MYA+C  ++ AR LF+   +     +++WN ++  Y   G  + 
Sbjct: 391 RLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER---HVITWNAMIHGYGSHGFGKA 447

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            + LF  M   + +  +  + ++ LSAC+           G+++E ++ F  MK      
Sbjct: 448 AVELFEEMKS-IGIVPNETTFLSVLSACS---------HAGLVDEGREYFTSMKEDYGLE 497

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
             +  +  MV    R G  ++A+A  +KM
Sbjct: 498 PGMEHYGTMVDLLGRAGKLDEAWAFIQKM 526


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 286/736 (38%), Positives = 440/736 (59%), Gaps = 27/736 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V+ WN++I   VR      A   F Q++    +  D YTFP VLKAC  L   R    +H
Sbjct: 139 VYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGR---KIH 195

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   GF  +VFV  +L+ MY+R   +  AR LFD+M      D+ SWN +++   Q+G
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM---PFRDMGSWNAMISGLIQNG 252

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           +A   L +   M  +  +  D V++ + L  CA LG  S       +     +   ++ +
Sbjct: 253 NAAQALDVLDEMRLE-GINMDSVTVASILPVCAQLGDIS----TATLIHLYVIKHGLEFE 307

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
             VS NA++  Y++ G+  DA  +F++M   +V    V+W+++IA Y Q      A   F
Sbjct: 308 LFVS-NALINMYAKFGNLGDAQKVFQQMFLRDV----VSWNSIIAAYEQNDDPVTARGFF 362

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +MQ  GLEP+++TLVSL S  A        +  H + ++R     G   + +++ NA++
Sbjct: 363 FKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRR-----GWLMEAVVIGNAVM 417

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAK   +D A  +F+ I  K  DV +W  +I  Y+QNG A++A+ ++ +M ++ + +K
Sbjct: 418 DMYAKLGVIDSAHKVFNLIPVK--DVVSWNTLISGYTQNGLASEAIEVY-RMMEECREIK 474

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            N  T    L A A + AL+ G +IH ++++    + + FV  CLID+Y + G +  A  
Sbjct: 475 LNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDV-FVGTCLIDLYGKCGRLVDAMC 533

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F  + + + V W ++++ +G+HG G+KA   F +M+ EG+ PD VTF+ LL ACSHSG+
Sbjct: 534 LFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGL 593

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           VD+G K+F  + +E+GI    +HY C+VDLLGRA  L+ A + I+ MP+ P   IW ALL
Sbjct: 594 VDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALL 652

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH N+ELG+ A++RL E++SE  G Y LLSNIYAN G+W+ V ++RSL +  G+KK
Sbjct: 653 GACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 712

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG S ++       F+ G+++HP+ ++IY  L  L  ++K++GY+P  SF L DV+++E
Sbjct: 713 TPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDE 772

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSE+LA+A+GI++T P + IRI KNLR+CGDCH+A  FIS I   EI++RDS 
Sbjct: 773 KEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSK 832

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK G C+C  YW
Sbjct: 833 RFHHFKNGICSCGDYW 848



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 177/362 (48%), Gaps = 32/362 (8%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC- 344
           +V  Y+ +G    +   F ++++++V     TW+++I+ Y + GH  EA+D F Q+    
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDV----YTWNSMISAYVRNGHFREAIDCFYQLLLVT 169

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
             + +  T   +L  C +   L+ G++ HC+  K           D+ V  +LI MY++ 
Sbjct: 170 KFQADFYTFPPVLKACQT---LVDGRKIHCWVFKLGFQW------DVFVAASLIHMYSRF 220

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             V +AR +FD +    RD+ +W  MI    QNG A  AL +  +M  +   +  ++ T+
Sbjct: 221 GFVGIARSLFDDMP--FRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG--INMDSVTV 276

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           +  L  CA+L  +     IH YV+++  E  + FV+N LI+MY++ G++  A+ VF  + 
Sbjct: 277 ASILPVCAQLGDISTATLIHLYVIKHGLEFEL-FVSNALINMYAKFGNLGDAQKVFQQMF 335

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            R+VVSW S++  Y  +     A   F +M+  GL PD +T + L      + +  Q   
Sbjct: 336 LRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL------ASIAAQSRD 389

Query: 585 YFDSMSKEFGISARAEHYACIV------DLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           Y +S S    I  R      +V      D+  +   +D A ++   +P++   + W  L+
Sbjct: 390 YKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDV-VSWNTLI 448

Query: 639 NG 640
           +G
Sbjct: 449 SG 450



 Score = 40.0 bits (92), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ-MRK 556
           F++  L+++Y+  GD+  +R  FD +++++V +W S+++ Y  +G   +A   F Q +  
Sbjct: 109 FISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLV 168

Query: 557 EGLAPDGVTFLVLLYAC 573
                D  TF  +L AC
Sbjct: 169 TKFQADFYTFPPVLKAC 185


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/696 (38%), Positives = 421/696 (60%), Gaps = 25/696 (3%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA-LMAMYARCDTLSYARQLFDEMFQP 199
           +L+ACG+      G  +H ++ +S    N FV N  ++ MY+ C + S +R +FD++ + 
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              ++  WN IV+AY ++   E  + +F+ +    + + D  +L   + ACA L     G
Sbjct: 171 ---NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 227

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA-LFKKMRQENVKLNVVTW 318
           +    M     +     V DV   NA++  Y + G  E+A   +F  M  + V     +W
Sbjct: 228 QIIHGMATKMDL-----VSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVS----SW 278

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A++ GYAQ     +ALD++ QM   GL+P+  T+ SLL  C+ + +L  G+E H + ++
Sbjct: 279 NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR 338

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             L+VD        +  +L+ +Y  C     A+V+FD +  ++R + +W VMI  YSQNG
Sbjct: 339 NGLAVDP------FIGISLLSLYICCGKPFAAQVLFDGM--EHRSLVSWNVMIAGYSQNG 390

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
             ++A+ LF QM      ++P    + C   AC++L+ALR G+++H + L+      I F
Sbjct: 391 LPDEAINLFRQMLSDG--IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDI-F 447

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V++ +IDMY++ G I  ++ +FD L++++V SW  ++ GYG+HG G +A   F++M + G
Sbjct: 448 VSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG 507

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           L PD  TF  +L ACSH+G+V+ GL+YF+ M     I  + EHY C+VD+LGRA R+D+A
Sbjct: 508 LKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDA 567

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
           + LIE MP +P   IW +LL+ CRIH N+ LGE  AN+LLELE EK  +Y L+SN++A +
Sbjct: 568 LRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGS 627

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           G+W DV R+R  MK  G++K  GCSW++       F +GD   P+ +++ E    L  +I
Sbjct: 628 GKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKI 687

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
            ++GY P T   LHD+++E+K  +L  HSEKLA+++G+L TA G P+R+ KNLRICGDCH
Sbjct: 688 SSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCH 747

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +A  FIS ++N +I++RD+ RFHHF++G C+C  YW
Sbjct: 748 NAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/541 (26%), Positives = 256/541 (47%), Gaps = 89/541 (16%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + +I  Y    +PS +  +  ++     ++F WNA++    R  L ++A  +F +++
Sbjct: 142 VLNTRIITMYSMCGSPSDSRMVFDKLRRK--NLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 128 RRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL 186
               H PD +T P V+KAC  L     G  +H +       S+VFV NAL+AMY +C  +
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 187 SYA-RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
             A +++FD M    +    SWN ++  YAQ+ D    L L+ +MT D  +  D  ++ +
Sbjct: 260 EEAVKRVFDLMDTKTVS---SWNALLCGYAQNSDPRKALDLYLQMT-DSGLDPDWFTIGS 315

Query: 246 ALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKD 279
            L AC+ + +   G++                          CG    A+ +F+ M+ + 
Sbjct: 316 LLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRS 375

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           +VSWN M+ GYS+ G  ++A  L                                   FR
Sbjct: 376 LVSWNVMIAGYSQNGLPDEAINL-----------------------------------FR 400

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           QM   G++P  + ++ +   C+ + AL LGKE HC+ +K  L+      +D+ V +++ID
Sbjct: 401 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT------EDIFVSSSIID 454

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAK   + +++ +FD +  + +DVA+W V+I  Y  +G   +AL LF +M +    +KP
Sbjct: 455 MYAKGGCIGLSQRIFDRL--REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG--LKP 510

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA- 516
           + FT +  LMAC+    +  G +    +L      + P + +  C++DM  R+G ID A 
Sbjct: 511 DDFTFTGILMACSHAGLVEDGLEYFNQML--NLHNIEPKLEHYTCVVDMLGRAGRIDDAL 568

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMH---GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           R++ +     +   W+SL++   +H   GLG+K      ++  E   P+    +  L+A 
Sbjct: 569 RLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPE--KPENYVLISNLFAG 626

Query: 574 S 574
           S
Sbjct: 627 S 627



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 169/398 (42%), Gaps = 68/398 (17%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNAL+    +   P  A  L+LQM   G  PD +T   +L AC  + S   G  +H
Sbjct: 274 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 333

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                +G   + F+  +L+++Y  C     A+ LFD M       +VSWN ++A Y+Q+G
Sbjct: 334 GFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRS---LVSWNVMIAGYSQNG 390

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC---------------- 262
             +  + LF +M  D  +Q   ++++    AC+ L     GK+                 
Sbjct: 391 LPDEAINLFRQMLSD-GIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS 449

Query: 263 ----------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                     G +  ++++F+R++ KDV SWN ++ GY   G  ++A  LF+KM +  +K
Sbjct: 450 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLK 509

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPN------VVTLV----------- 354
            +  T++ ++   +  G   + L+ F QM     +EP       VV ++           
Sbjct: 510 PDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALR 569

Query: 355 ---------------SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                          SLLS C   G L LG++       ++L ++   P++ ++I+ L  
Sbjct: 570 LIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEK----VANKLLELEPEKPENYVLISNLFA 625

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
              K   V   R     I  +     +W + +G    N
Sbjct: 626 GSGKWDDVRRVRGRMKDIGLQKDAGCSW-IEVGGKVHN 662


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/744 (37%), Positives = 430/744 (57%), Gaps = 42/744 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+    +  L + A +LF QM   G  P+ +TF  VL       +   G  VH
Sbjct: 157 NVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++  SG DS +FV N+++ MY++   +S A+ +FD M      + VSWN+++A +  +G
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR---NAVSWNSMIAGFVTNG 273

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSA-----CASLGTWSRGKQ--CGMMEEAKKV 271
                  LF RM      + +GV L   + A     CA++   S  KQ  C +++     
Sbjct: 274 LDLEAFELFYRM------RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
              +K        A++  YS+    +DAF LF  M       NVV+W+A+I+GY Q G  
Sbjct: 328 DLNIKT-------ALMVAYSKCSEIDDAFKLFCMMHGVQ---NVVSWTAIISGYVQNGRT 377

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
             A+++F QM+  G+ PN  T  ++L+  A+V       + H   +K       ++ +  
Sbjct: 378 DRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVVKT------NYENSP 427

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V  AL D Y+K    + A  +F+ I  K  D+  W+ M+  Y+Q G    A+ +F Q+ 
Sbjct: 428 SVGTALSDSYSKIGDANEAAKIFELIDEK--DIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 452 QQDKLVKPNAFTLSCALMACAR-LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
           ++   V+PN FT S  L ACA   A++  G+Q H+  +++ +   +  V++ L+ MY++ 
Sbjct: 486 KEG--VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALC-VSSALVTMYAKR 542

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G+I++A  VF     R++VSW S+++GY  HG G K+   F++MR + L  DG+TF+ ++
Sbjct: 543 GNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVI 602

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            AC+H+G+V++G +YFD M K++ I    EHY+C+VDL  RA  L++A++LI  MP    
Sbjct: 603 SACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAG 662

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
             IW  LL  CR+H NV+LGELAA +L+ L+ +   +Y LLSNIYA AG W++ A++R L
Sbjct: 663 ATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKL 722

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           M    VKK  G SW++ K  T +F  GD +HPQS +IY  L  L  R+K  GY P T + 
Sbjct: 723 MDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYV 782

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHDV++E K  +L +HSE+LA+A+G++ T PGTPI+I KNLR+CGDCH+ I  IS I   
Sbjct: 783 LHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGR 842

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           +I++RDSNRFHHFK GSC+C  YW
Sbjct: 843 DIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 226/497 (45%), Gaps = 101/497 (20%)

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVN 245
           +++QLFDE  Q G+      N ++  ++++   +  L LF   R +G      DG SL  
Sbjct: 44  HSQQLFDETPQQGLS---RNNHLLFEFSRNDQNKEALNLFLGLRRSGS---PTDGSSLSC 97

Query: 246 ALSACASLGTWSRGKQ-------CGMMEE-------------------AKKVFERMKVKD 279
            L  C  L     GKQ       CG +E+                    ++VF+ M+VK+
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VVSW +++ GY + G  E A  LF +M+ E +K N  T++AV+ G               
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGL-------------- 203

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                                A+ GA+  G + H   IK  L         + V N++++
Sbjct: 204 ---------------------AADGAVEKGVQVHTMVIKSGLD------STIFVGNSMVN 236

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+K   V  A+ +FD++  +NR+  +W  MI  +  NG   +A  LF +M  +   VK 
Sbjct: 237 MYSKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG--VKL 292

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
                +  +  CA +  + F +Q+H  V++N  +  +  +   L+  YS+  +ID A  +
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN-IKTALMVAYSKCSEIDDAFKL 351

Query: 520 FDNLKQ-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS---- 574
           F  +   +NVVSWT++++GY  +G  D+A   F QMR+EG+ P+  T+  +L A +    
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP 411

Query: 575 ---HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
              H+ +V    +   S+      +A ++ Y+ I    G AN   +  ELI+    E   
Sbjct: 412 SQIHALVVKTNYENSPSVG-----TALSDSYSKI----GDANEAAKIFELID----EKDI 458

Query: 632 IIWVALLNGCRIHANVE 648
           + W A+L+G     ++E
Sbjct: 459 VAWSAMLSGYAQMGDIE 475


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/750 (36%), Positives = 425/750 (56%), Gaps = 45/750 (6%)

Query: 95   PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
            PS  +V  WN ++    +    + +  LF QM   G  PDE+    +LK    L  +R G
Sbjct: 370  PSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDG 429

Query: 155  SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
               H  +   GF +   VCNAL++ YA+ + +  A  +FD M      D +SWN++++  
Sbjct: 430  LVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQ---DTISWNSVISGC 486

Query: 215  AQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGK-------QCGM 264
              +G     + LF RM     +QG   D  +L++ L ACA    W  G+       + G+
Sbjct: 487  TSNGLNSEAIELFVRMW----MQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGL 542

Query: 265  MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
            + E                NA++  YS    +     +F+ M Q+NV    V+W+A+I  
Sbjct: 543  IGETSLA------------NALLDMYSNCSDWHSTNQIFRNMAQKNV----VSWTAMITS 586

Query: 325  YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            Y + G   +   + ++M   G++P+V  + S+L G A   +L  GK  H Y I+  +   
Sbjct: 587  YTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGME-- 644

Query: 385  GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                  L V NAL++MY  C++++ AR++FD +   N+D+ +W  +IG YS+N  AN++ 
Sbjct: 645  ----KLLPVANALMEMYVNCRNMEEARLVFDHVT--NKDIISWNTLIGGYSRNNFANESF 698

Query: 445  ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            +LF  M  Q    KPN  T++C L A A +++L  GR+IHAY LR  + +   + +N L+
Sbjct: 699  SLFSDMLLQ---FKPNTVTMTCILPAVASISSLERGREIHAYALRRGF-LEDSYTSNALV 754

Query: 505  DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            DMY + G +  ARV+FD L ++N++SWT ++ GYGMHG G  A   F+QMR  G+ PD  
Sbjct: 755  DMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTA 814

Query: 565  TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
            +F  +LYAC HSG+  +G K+F++M KE+ I  + +HY CIVDLL     L EA E IE 
Sbjct: 815  SFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIES 874

Query: 625  MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
            MP+EP   IWV+LL+GCRIH +V+L E  A+R+ +LE E  G Y LL+NIYA A RW+ V
Sbjct: 875  MPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAV 934

Query: 685  ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744
             ++++ +   G+++  GCSW++ +     F   +R HP+  +I E L  + +R++  G+ 
Sbjct: 935  KKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGHD 994

Query: 745  PQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFI 804
            P+  ++L   +D    + L  HS KLA+ +G+L    G PIR+TKN ++C  CH A  FI
Sbjct: 995  PKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFI 1054

Query: 805  SMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            S + N EIILRDS+RFHHF+ G C+C+G++
Sbjct: 1055 SKMCNREIILRDSSRFHHFEGGRCSCRGHF 1084



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 220/470 (46%), Gaps = 71/470 (15%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVI-CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           ++  V++ CGE  S       HA++   +G      +   L+  Y +C  L  AR +FDE
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDE 155

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M  P + D+  W ++++AYA++GD + G+ LF +M     V  D  ++   L   ASLG+
Sbjct: 156 M-PPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC-CGVSPDAHAVSCVLKCIASLGS 213

Query: 256 WSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
            + G+                          +CG ME+A +VF+ M  +D +SWN+ ++G
Sbjct: 214 ITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISG 273

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y   G  + A  LF KM           WS                         G E +
Sbjct: 274 YFSNGWHDRAVDLFSKM-----------WSE------------------------GTEIS 298

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD---DLMVINALIDMYAKCKS 406
            VT++S+L  CA +G  L+GK  H Y++K  L  D        D  + + L+ MY KC  
Sbjct: 299 SVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGD 358

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  AR +FDA+ P   +V  W +++G Y++     ++L LF QM +    + P+   LSC
Sbjct: 359 MGSARRVFDAM-PSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELG--ITPDEHALSC 415

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L     L+  R G   H Y+++  +      V N LI  Y++S  ID A +VFD +  +
Sbjct: 416 LLKCITCLSCARDGLVAHGYLVKLGFGTQCA-VCNALISFYAKSNMIDNAVLVFDRMPHQ 474

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           + +SW S+++G   +GL  +A   F +M  +G   D  T L +L AC+ S
Sbjct: 475 DTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 158/612 (25%), Positives = 260/612 (42%), Gaps = 118/612 (19%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+ AY+       A  +   + P    V  W +L+    +         LF QM   G  
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD +    VLK    L S   G  +H ++   G      V NAL+A+Y+RC  +  A Q+
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD M      D +SWN+ ++ Y  +G  +  + LF++M  +   +   V++++ L ACA 
Sbjct: 256 FDSMHAR---DAISWNSTISGYFSNGWHDRAVDLFSKMWSE-GTEISSVTVLSVLPACAE 311

Query: 253 LGTWSRGK-----------------------------------QCGMMEEAKKVFERMKV 277
           LG    GK                                   +CG M  A++VF+ M  
Sbjct: 312 LGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPS 371

Query: 278 K-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-------------------------- 310
           K +V  WN ++ GY++   FE++  LF++M +                            
Sbjct: 372 KGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLV 431

Query: 311 -----VKLNVVTWSAV----IAGYAQRGHGHEALDVFRQMQF------------C---GL 346
                VKL   T  AV    I+ YA+      A+ VF +M              C   GL
Sbjct: 432 AHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGL 491

Query: 347 EPNVVTL----------------VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
               + L                +S+L  CA      +G+  H Y++K  L  + S    
Sbjct: 492 NSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETS---- 547

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
             + NAL+DMY+ C        +F  +A KN  V +WT MI SY++ G  +    L  +M
Sbjct: 548 --LANALLDMYSNCSDWHSTNQIFRNMAQKN--VVSWTAMITSYTRAGLFDKVAGLLQEM 603

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                 +KP+ F ++  L   A   +L+ G+ +H Y +RN  E L+P VAN L++MY   
Sbjct: 604 VLDG--IKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLP-VANALMEMYVNC 660

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            +++ AR+VFD++  ++++SW +L+ GY  +   +++   F  M  +   P+ VT   +L
Sbjct: 661 RNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCIL 719

Query: 571 YACSHSGMVDQG 582
            A +    +++G
Sbjct: 720 PAVASISSLERG 731



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 193/408 (47%), Gaps = 36/408 (8%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V  Y + G    A  +F +M      + V  W+++++ YA+ G   E + +FRQMQ CG
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRV--WTSLMSAYAKAGDFQEGVSLFRQMQCCG 193

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + P+   +  +L   AS+G++  G+  H    K  L       +   V NALI +Y++C 
Sbjct: 194 VSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLG------EACAVANALIALYSRCG 247

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            ++ A  +FD++    RD  +W   I  Y  NG  + A+ LF +M+ +   +  ++ T+ 
Sbjct: 248 CMEDAMQVFDSM--HARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEI--SSVTVL 303

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFV--------ANCLIDMYSRSGDIDTAR 517
             L ACA L     G+ +H Y +++     +  V         + L+ MY + GD+ +AR
Sbjct: 304 SVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSAR 363

Query: 518 VVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL-----Y 571
            VFD +  + NV  W  +M GY      +++   F+QM + G+ PD      LL      
Sbjct: 364 RVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCL 423

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           +C+  G+V  G         + G   +      ++    ++N +D AV + + MP + T 
Sbjct: 424 SCARDGLVAHGYLV------KLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDT- 476

Query: 632 IIWVALLNGCRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANA 678
           I W ++++GC  +  N E  EL     + ++  +  S TLLS + A A
Sbjct: 477 ISWNSVISGCTSNGLNSEAIELFVR--MWMQGHELDSTTLLSVLPACA 522



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 466 CALMA-CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           CA++  C    +L   R+ HA V      ++   +   L+  Y + GD+  AR+VFD + 
Sbjct: 98  CAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMP 157

Query: 525 QR--NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            R  +V  WTSLM+ Y   G   +    F QM+  G++PD      +L   +  G + +G
Sbjct: 158 PRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEG 217

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +    + ++ G+         ++ L  R   +++A+++ + M      I W + ++G
Sbjct: 218 -EVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDA-ISWNSTISG 273


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/795 (36%), Positives = 450/795 (56%), Gaps = 33/795 (4%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L R C +L     +H +++V N        + L+  Y      + A      I      V
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR--DV 117

Query: 101 FWWNALIRRAVRLRLPDNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           + WN +I    R        R F L M+  G  PD  TFP VLKAC  +     G+ +H 
Sbjct: 118 YAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHC 174

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +    GF  +V+V  +L+ +Y R   +  AR LFDEM      D+ SWN +++ Y QSG+
Sbjct: 175 LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTR---DMGSWNAMISGYCQSGN 231

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
           A+  L L      D     D V++V+ LSAC   G ++RG    +   +  +   ++ + 
Sbjct: 232 AKEALTL-----SDGLRAMDSVTVVSLLSACTEAGDFNRG----VTIHSYSIKHGLESEL 282

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            VS N ++  Y+  GS +D   +F +M   ++    ++W+++I  Y        A+ +F+
Sbjct: 283 FVS-NKLIDLYAEFGSLKDCQKVFDRMYVRDL----ISWNSIIKAYELNEQPLRAILLFQ 337

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M+   ++P+ +TL+SL S  + +G +   +    +T+++     G   +D+ + NA++ 
Sbjct: 338 EMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRK-----GWFLEDITIGNAVVV 392

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAK   VD AR +F+ +   N+DV +W  +I  Y+QNG A++A+ ++  M ++   +  
Sbjct: 393 MYAKLGLVDSARAVFNWLP--NKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISA 450

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N  T    L AC++  ALR G ++H  +L+N   + + FV   L DMY + G +D A  +
Sbjct: 451 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV-FVGTSLADMYGKCGRLDDALSL 509

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  + + N V W +L+  +G HG G+KA   F +M  EG+ PD +TF+ LL ACSHSG+V
Sbjct: 510 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 569

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D+G   F+ M  ++GI+   +HY C+VDL GRA +L+ A+  I+ MP++P   IW ALL+
Sbjct: 570 DEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLS 629

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR+H NV+LG++A+  L E+E E  G + LLSN+YA+AG+W+ V  IRS+    G++K 
Sbjct: 630 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKT 689

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG S ++       F+ G++THP  +++Y  L  L +++K +GYVP   F L DV+D+EK
Sbjct: 690 PGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEK 749

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             +L  HSE+LA+A+ ++TT   T IRI KNLR+CGDCHS   FIS I   EII+RDSNR
Sbjct: 750 EHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 809

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK G C+C  YW
Sbjct: 810 FHHFKNGVCSCGDYW 824


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/717 (39%), Positives = 428/717 (59%), Gaps = 26/717 (3%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A   F+ M   G  P   TF  +LK C        G +VHA + + G DS      AL  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA+C   + AR++FD M    + D V+WN +VA YA++G A   + +  RM  +   + 
Sbjct: 103 MYAKCRRPADARRVFDRM---PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNAMVTGYSRIGSFE 297
           D ++LV+ L ACA+    +         EA     R  ++++V+   A++  Y + G   
Sbjct: 160 DSITLVSVLPACANARALA------ACREAHAFAIRSGLEELVNVATAILDAYCKCGDIR 213

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A  +F  M  +N     V+W+A+I GYAQ G   EAL +F +M   G++   V++++ L
Sbjct: 214 AARVVFDWMPTKNS----VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C  +G L  G   H   ++  L  + S      V+NALI MY+KCK VD+A  +FD +
Sbjct: 270 QACGELGCLDEGMRVHELLVRIGLDSNVS------VMNALITMYSKCKRVDLASHVFDEL 323

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               R   +W  MI   +QNG + DA+ LF +M  Q + VKP++FTL   + A A ++  
Sbjct: 324 --DRRTQVSWNAMILGCAQNGCSEDAVRLFTRM--QLENVKPDSFTLVSVIPALADISDP 379

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
              R IH Y +R   +  + +V   LIDMY++ G ++ AR++F++ ++R+V++W +++ G
Sbjct: 380 LQARWIHGYSIRLHLDQDV-YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           YG HG G  A   F++M+  G+ P+  TFL +L ACSH+G+VD+G +YF SM +++G+  
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP 498

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             EHY  +VDLLGRA +LDEA   I+ MPM+P   ++ A+L  C++H NVEL E +A ++
Sbjct: 499 GMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKI 558

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
            EL  ++   + LL+NIYANA  WKDVAR+R+ M+  G++K PG S +Q K    TF+ G
Sbjct: 559 FELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSG 618

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
              H Q+++IY  LA L++ IKA+GYVP T  ++HDV+D+ K  LL  HSEKLA+A+G++
Sbjct: 619 STNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAFGLI 677

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            TAPGT I+I KNLR+C DCH+A   IS++   EII+RD  RFHHFK+G C+C  YW
Sbjct: 678 RTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    +    ++A RLF +M      PD +T   V+ A  ++        +H    
Sbjct: 331 WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSI 390

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               D +V+V  AL+ MYA+C  ++ AR LF+   +     +++WN ++  Y   G  + 
Sbjct: 391 RLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER---HVITWNAMIHGYGSHGFGKA 447

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            + LF  M   + +  +  + ++ LSAC+           G+++E ++ F  MK      
Sbjct: 448 AVELFEEMKS-IGIVPNETTFLSVLSACS---------HAGLVDEGREYFTSMKEDYGLE 497

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
             +  +  MV    R G  ++A+A  +KM
Sbjct: 498 PGMEHYGTMVDLLGRAGKLDEAWAFIQKM 526


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/737 (38%), Positives = 437/737 (59%), Gaps = 29/737 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +F WN L+    +    D A  L+ +M+  G  PD YTFP VL+ CG LP    G  VH 
Sbjct: 160 LFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHL 219

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF+S+V V NAL+ MY +C  +  AR +FD M +    D +SWN +++ Y ++  
Sbjct: 220 HVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR---DRISWNAMISGYFENDV 276

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
              GL LF  M  +  V  D +++ + +SAC +LG    G+     E    V +   V +
Sbjct: 277 CLEGLRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGR-----EVHGYVIKTGFVAE 330

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   N+++  +S +G +++A  +F KM  +++    V+W+A+I+GY + G   +A++ + 
Sbjct: 331 VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL----VSWTAMISGYEKNGLPEKAVETYT 386

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+  G+ P+ +T+ S+LS CA +G L  G   H +  +  L+        ++V N+LID
Sbjct: 387 IMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT------SYVIVANSLID 440

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+KC+ +D A  +F  I   N++V +WT +I     N  + +AL  F QM      +KP
Sbjct: 441 MYSKCRCIDKALEVFHRIP--NKNVISWTSIILGLRLNYRSFEALFFFQQMILS---LKP 495

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N+ TL   L ACAR+ AL  G++IHA+ LR        F+ N L+DMY R G ++ A   
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLG-FDGFLPNALLDMYVRCGRMEPAWNQ 554

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F++  +++V SW  L+TGY   G G  A   F +M +  + PD +TF  LL ACS SGMV
Sbjct: 555 FNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMV 613

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
             GL+YF+SM  +F I+   +HYA +VDLLGRA RL++A E I+ MP++P P IW ALLN
Sbjct: 614 TDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLN 673

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CRI+ NVELGELAA  + E++++  G Y LL N+YA++G+W +VAR+R +M+   +   
Sbjct: 674 ACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVD 733

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PGCSWV+       F  GD  HPQ ++I  +L G  ++++A G +  +  +  D  D  K
Sbjct: 734 PGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATG-LSMSKDSRRDDIDASK 792

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
            ++   HSE+LA+A+G++ T PGTPI +TKNL +C +CH+ + FIS ++   I +RD+ +
Sbjct: 793 AEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQ 852

Query: 820 FHHFKEGSCTC--KGYW 834
           FHHFK+G C+C  +GYW
Sbjct: 853 FHHFKDGVCSCGDEGYW 869



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 227/439 (51%), Gaps = 27/439 (6%)

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG--MM 265
           N+++      GD E  L+    M  +++V  +  + +  L  C     W R    G  + 
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQ-ELQVSVEEETYIALLRLC----EWKRAASEGSRVH 117

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
               K   R+ V+     NA+++ + R G   +A+ +F KM + ++     +W+ ++ GY
Sbjct: 118 SYVSKTVTRLGVR---LGNALLSMFVRFGDLVEAWYVFGKMAERDL----FSWNVLVGGY 170

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           A+ G+  EAL+++ +M + G+ P+V T   +L  C  +  L  G+E H + I+       
Sbjct: 171 AKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY------ 224

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
               D+ V+NALI MY KC  +  AR++FD + P+ RD  +W  MI  Y +N    + L 
Sbjct: 225 GFESDVDVVNALITMYVKCGDIFSARLVFDRM-PR-RDRISWNAMISGYFENDVCLEGLR 282

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           LF  M  ++  V P+  T++  + AC  L   R GR++H YV++  +   +  V N LI 
Sbjct: 283 LFFMM--REFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVS-VNNSLIQ 339

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           M+S  G  D A +VF  ++ +++VSWT++++GY  +GL +KA   +  M  EG+ PD +T
Sbjct: 340 MHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
              +L AC+  G++D+G+      +   G+++       ++D+  +   +D+A+E+   +
Sbjct: 400 IASVLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI 458

Query: 626 PMEPTPIIWVALLNGCRIH 644
           P     I W +++ G R++
Sbjct: 459 P-NKNVISWTSIILGLRLN 476



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 241/485 (49%), Gaps = 26/485 (5%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +E T+  +L+ C    ++  GS VH+ +  +     V + NAL++M+ R   L  A  +F
Sbjct: 93  EEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVF 152

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
            +M +    D+ SWN +V  YA++G  +  L L+ RM   V ++ D  +    L  C  L
Sbjct: 153 GKMAER---DLFSWNVLVGGYAKAGYFDEALNLYHRMLW-VGIRPDVYTFPCVLRTCGGL 208

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
              +RG++   +   +  FE     DV   NA++T Y + G    A  +F +M +     
Sbjct: 209 PDLARGREV-HLHVIRYGFE----SDVDVVNALITMYVKCGDIFSARLVFDRMPRR---- 259

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + ++W+A+I+GY +     E L +F  M+   ++P+++T+ S++S C ++G   LG+E H
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y IK     + S      V N+LI M++     D A ++F  +  K  D+ +WT MI  
Sbjct: 320 GYVIKTGFVAEVS------VNNSLIQMHSSVGCWDEAEMVFSKMEFK--DLVSWTAMISG 371

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y +NG    A+  +  M  +   V P+  T++  L ACA L  L  G  +H +  R    
Sbjct: 372 YEKNGLPEKAVETYTIMEHEG--VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT 429

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  VAN LIDMYS+   ID A  VF  +  +NV+SWTS++ G  ++    +A + F Q
Sbjct: 430 SYV-IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQ 488

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M    L P+ VT + +L AC+  G +  G K   + +   G+         ++D+  R  
Sbjct: 489 MIL-SLKPNSVTLVSVLSACARIGALSCG-KEIHAHALRTGLGFDGFLPNALLDMYVRCG 546

Query: 614 RLDEA 618
           R++ A
Sbjct: 547 RMEPA 551


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 289/732 (39%), Positives = 428/732 (58%), Gaps = 30/732 (4%)

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           LI+  V+    D    LF ++ R G   + + F  +LK    +  +    S+HA I   G
Sbjct: 12  LIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLG 71

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            +SN FV  AL+  YA C +++ ARQ FD +      D+VSW  +VA YA++   +  L 
Sbjct: 72  HESNAFVGTALIDAYAVCGSVNSARQAFDAI---ACKDMVSWTGMVACYAENDRFQDSLQ 128

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---CGMMEEAKKVFERMKVKDVVS 282
           LFA M   V    +  +    L AC  L  +S GK    C +    K  +E     D+  
Sbjct: 129 LFAEMRM-VGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVL----KTCYEM----DLYV 179

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              ++  Y++ G   D   +F++M     K +V+ WS +I+ YAQ     EA+++F QM+
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMP----KHDVIPWSFMISRYAQSNQSREAVELFGQMR 235

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              + PN  T  S+L  CAS+  L LGK+ HC+ +K  + +DG    ++ V NAL+D+YA
Sbjct: 236 RAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLK--VGLDG----NVFVSNALMDVYA 289

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +D +  +F  +   NR+  TW  MI  Y Q+G  + AL+L+  M +    V+ +  
Sbjct: 290 KCGRLDNSMKLF--MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQ--VQASEV 345

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T S  L ACA LAA+  G QIH+  L+  Y+  +  V N LIDMY++ G I  AR+VFD 
Sbjct: 346 TYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV-VVGNALIDMYAKCGSIKNARLVFDM 404

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L +R+ +SW ++++GY MHGL  +A  AF  M++    P+ +TF+ +L ACS++G++D G
Sbjct: 405 LSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIG 464

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             YF SM +++GI    EHY C+V LLGR+  LD+AV+LIE +P+EP   +W ALL  C 
Sbjct: 465 QNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACV 524

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH +V+LG ++A ++L+++ + + ++ LLSNIYA   RW  VA +R  MK+ GVKK PG 
Sbjct: 525 IHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGL 584

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ +     F VGD +HP  + I  +L  L  + +  GYVP  +  L DV+D+EK   
Sbjct: 585 SWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRH 644

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L+ HSE+LALA+G++ T     IRI KNLRIC DCHSAI  IS I+  +II+RD NRFHH
Sbjct: 645 LWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHH 704

Query: 823 FKEGSCTCKGYW 834
           F++G C+C  YW
Sbjct: 705 FQDGICSCGDYW 716



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 179/352 (50%), Gaps = 19/352 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ +I R  +      A  LF QM R    P+++TF  VL++C  + + + G  VH  + 
Sbjct: 211 WSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL 270

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G D NVFV NALM +YA+C  L  + +LF E+  P   + V+WNT++  Y QSGD + 
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMEL--PNRNE-VTWNTMIVGYVQSGDGDK 327

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L L+  M  + +VQ   V+  + L ACASL     G Q   +   K +++    KDVV 
Sbjct: 328 ALSLYKNML-ECQVQASEVTYSSVLRACASLAAMELGTQIHSL-SLKTIYD----KDVVV 381

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++ GS ++A  +F  + +     + ++W+A+I+GY+  G   EAL  F+ MQ
Sbjct: 382 GNALIDMYAKCGSIKNARLVFDMLSER----DEISWNAMISGYSMHGLVGEALKAFQMMQ 437

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
                PN +T VS+LS C++ G L +G+       K ++   G  P  +     ++ +  
Sbjct: 438 ETECVPNKLTFVSILSACSNAGLLDIGQN----YFKSMVQDYGIEP-CMEHYTCMVWLLG 492

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           +   +D A  + + I P   +V  W  ++G+   +   +  +    Q+ Q D
Sbjct: 493 RSGHLDKAVKLIEEI-PLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQID 543



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 158/329 (48%), Gaps = 17/329 (5%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N V++  +I GY Q     E +D+F ++   G E N     ++L    SV    L    H
Sbjct: 5   NTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLH 64

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
               K        H  +  V  ALID YA C SV+ AR  FDAIA K  D+ +WT M+  
Sbjct: 65  ACIYKL------GHESNAFVGTALIDAYAVCGSVNSARQAFDAIACK--DMVSWTGMVAC 116

Query: 434 YSQNGGANDALALFPQMFQQDKLV--KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
           Y++N    D+L LF +M    ++V   PN FT +  L AC  L A   G+ +H  VL+  
Sbjct: 117 YAENDRFQDSLQLFAEM----RMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTC 172

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           YEM + +V   L+D+Y++ GD +    VF+ + + +V+ W+ +++ Y       +A   F
Sbjct: 173 YEMDL-YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELF 231

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            QMR+  + P+  TF  +L +C+    +  G K       + G+         ++D+  +
Sbjct: 232 GQMRRAFVLPNQFTFASVLQSCASIENLQLG-KQVHCHVLKVGLDGNVFVSNALMDVYAK 290

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNG 640
             RLD +++L   +P     + W  ++ G
Sbjct: 291 CGRLDNSMKLFMELP-NRNEVTWNTMIVG 318



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 56/287 (19%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG---WH----------------------- 132
           +VF  NAL+    +    DN+ +LF+++  R    W+                       
Sbjct: 277 NVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNML 336

Query: 133 -----PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
                  E T+  VL+AC  L +   G+ +H++   + +D +V V NAL+ MYA+C ++ 
Sbjct: 337 ECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIK 396

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            AR +FD + +    D +SWN +++ Y+  G     L  F +M  + +   + ++ V+ L
Sbjct: 397 NARLVFDMLSER---DEISWNAMISGYSMHGLVGEALKAF-QMMQETECVPNKLTFVSIL 452

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKD------VVSWNAMVTGYSRIGSFEDAFA 301
           SAC++          G+++  +  F+ M V+D      +  +  MV    R G  + A  
Sbjct: 453 SACSN---------AGLLDIGQNYFKSM-VQDYGIEPCMEHYTCMVWLLGRSGHLDKAVK 502

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
           L +++  E    NV  W A++   A   H    L +    Q   ++P
Sbjct: 503 LIEEIPLEP---NVKVWRALLG--ACVIHNDVDLGIMSAQQILQIDP 544


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/732 (38%), Positives = 427/732 (58%), Gaps = 23/732 (3%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           N L+    R      A  LFL + R G   D  +   VLK CG L     G  VH     
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
            GF  +V V  +L+ MY + +++    ++FDEM    + ++VSW +++A Y Q+G  E  
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEM---RVKNVVSWTSLLAGYRQNGLNEQA 177

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW 283
           L LF++M  +  ++ +  +    L   A+ G   +G Q   M     V +      +   
Sbjct: 178 LKLFSQMQLE-GIKPNPFTFAAVLGGLAADGAVEKGVQVHTM-----VIKSGLDSTIFVG 231

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N+MV  YS+     DA A+F  M   N     V+W+++IAG+   G   EA ++F +M+ 
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNA----VSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G++       +++  CA++  +   K+ HC  IK     +GS  D L +  AL+  Y+K
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIK-----NGSDFD-LNIKTALMVAYSK 341

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +D A  +F  +    ++V +WT +I  Y QNG  + A+ LF QM ++++ V+PN FT
Sbjct: 342 CSEIDDAFKLF-CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM-RREEGVEPNEFT 399

Query: 464 LSCALMACAR-LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            S  L ACA   A++  G+Q H+  +++ +   +  V++ L+ MY++ G+I++A  VF  
Sbjct: 400 FSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALC-VSSALVTMYAKRGNIESANEVFKR 458

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
              R++VSW S+++GY  HG G K+   F++MR + L  DG+TF+ ++ AC+H+G+V++G
Sbjct: 459 QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEG 518

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            +YFD M K++ I    EHY+C+VDL  RA  L++A++LI  MP      IW  LL  CR
Sbjct: 519 QRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACR 578

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H NV+LGELAA +L+ L+ +   +Y LLSNIYA AG W++ A++R LM    VKK  G 
Sbjct: 579 VHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGY 638

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ K  T +F  GD +HPQS +IY  L  L  R+K  GY P T + LHDV++E K  +
Sbjct: 639 SWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVI 698

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L +HSE+LA+A+G++ T PGTPI+I KNLR+CGDCH+ I  IS I   +I++RDSNRFHH
Sbjct: 699 LSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHH 758

Query: 823 FKEGSCTCKGYW 834
           FK GSC+C  YW
Sbjct: 759 FKGGSCSCGDYW 770



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 218/429 (50%), Gaps = 42/429 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+    +  L + A +LF QM   G  P+ +TF  VL       +   G  VH
Sbjct: 157 NVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++  SG DS +FV N+++ MY++   +S A+ +FD M      + VSWN+++A +  +G
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR---NAVSWNSMIAGFVTNG 273

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSA-----CASLGTWSRGKQ--CGMMEEAKKV 271
                  LF RM      + +GV L   + A     CA++   S  KQ  C +++     
Sbjct: 274 LDLEAFELFYRM------RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                  D+    A++  YS+    +DAF LF  M       NVV+W+A+I+GY Q G  
Sbjct: 328 -------DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQ---NVVSWTAIISGYVQNGRT 377

Query: 332 HEALDVFRQMQF-CGLEPNVVTLVSLLSGCAS-VGALLLGKETHCYTIKRVLSVDGSHPD 389
             A+++F QM+   G+EPN  T  S+L+ CA+   ++  GK+ H  +IK   S      +
Sbjct: 378 DRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS------N 431

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            L V +AL+ MYAK  +++ A  +F      +RD+ +W  MI  Y+Q+G    +L +F +
Sbjct: 432 ALCVSSALVTMYAKRGNIESANEVFKRQV--DRDLVSWNSMISGYAQHGCGKKSLKIFEE 489

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMY 507
           M  + K ++ +  T    + AC     +  G++    ++++ +  ++P +   +C++D+Y
Sbjct: 490 M--RSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYH--IVPTMEHYSCMVDLY 545

Query: 508 SRSGDIDTA 516
           SR+G ++ A
Sbjct: 546 SRAGMLEKA 554



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 238/509 (46%), Gaps = 89/509 (17%)

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF--ARMTGDVKVQGDGVSLVN 245
           +++QLFDE  Q G+      N ++  ++++   +  L LF   R +G      DG SL  
Sbjct: 44  HSQQLFDETPQQGLS---RNNHLLFEFSRNDQNKEALNLFLGLRRSGS---PTDGSSLSC 97

Query: 246 ALSACASLGTWSRGKQ-------CGM-------------------MEEAKKVFERMKVKD 279
            L  C  L     GKQ       CG                    +E+ ++VF+ M+VK+
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VVSW +++ GY + G  E A  LF +M+ E +K N  T++AV+ G               
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGL-------------- 203

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                                A+ GA+  G + H   IK  L         + V N++++
Sbjct: 204 ---------------------AADGAVEKGVQVHTMVIKSGLD------STIFVGNSMVN 236

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+K   V  A+ +FD++  +NR+  +W  MI  +  NG   +A  LF +M  +   VK 
Sbjct: 237 MYSKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG--VKL 292

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
                +  +  CA +  + F +Q+H  V++N  +  +  +   L+  YS+  +ID A  +
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN-IKTALMVAYSKCSEIDDAFKL 351

Query: 520 FDNLKQ-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYACSH-S 576
           F  +   +NVVSWT++++GY  +G  D+A   F QMR+ EG+ P+  TF  +L AC+  +
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPT 411

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             V+QG K F S S + G S      + +V +  +   ++ A E+ +   ++   + W +
Sbjct: 412 ASVEQG-KQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK-RQVDRDLVSWNS 469

Query: 637 LLNGCRIHA----NVELGELAANRLLELE 661
           +++G   H     ++++ E   ++ LEL+
Sbjct: 470 MISGYAQHGCGKKSLKIFEEMRSKNLELD 498


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/739 (39%), Positives = 419/739 (56%), Gaps = 31/739 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG--SSV 157
           +F W  +I    +      AF LFLQM R G  P+  T+  +L A     +        V
Sbjct: 197 IFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEV 256

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD--IVSWNTIVAAYA 215
           H     +GF S++ V NAL+ MYA+C ++  AR +FD     G+CD  ++SWN ++   A
Sbjct: 257 HKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFD-----GMCDRDVISWNAMIGGLA 311

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           Q+G       +F +M  +  V  D  + ++ L+   S G W   K     E  K   E  
Sbjct: 312 QNGCGHEAFTIFLKMQQEGFVP-DSTTYLSLLNTHVSTGAWEWVK-----EVHKHAVEVG 365

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
            V D+   +A V  Y R GS +DA  +F K+   NV     TW+A+I G AQ+  G EAL
Sbjct: 366 LVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNV----TTWNAMIGGVAQQKCGREAL 421

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +F QM+  G  P+  T V++LS      AL   KE H Y I   L        DL V N
Sbjct: 422 SLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLV-------DLRVGN 474

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           AL+ MYAKC +   A+ +FD +  +N  V TWTVMI   +Q+G  ++A +LF QM ++  
Sbjct: 475 ALVHMYAKCGNTMYAKQVFDDMVERN--VTTWTVMISGLAQHGCGHEAFSLFLQMLREG- 531

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            + P+A T    L ACA   AL + +++H++ + N   +    V N L+ MY++ G +D 
Sbjct: 532 -IVPDATTYVSILSACASTGALEWVKEVHSHAV-NAGLVSDLRVGNALVHMYAKCGSVDD 589

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR VFD++ +R+V SWT ++ G   HG G  A   F +M+ EG  P+G +F+ +L ACSH
Sbjct: 590 ARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSH 649

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +G+VD+G + F S+++++GI    EHY C+VDLLGRA +L+EA   I  MP+EP    W 
Sbjct: 650 AGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWG 709

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL  C  + N+E+ E AA   L+L+ +   +Y LLSNIYA  G W+    +RS+M+  G
Sbjct: 710 ALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRG 769

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           ++K PG SW++      +F VGD +HP+S++IY  L  L++R+KA GYVP T   L + D
Sbjct: 770 IRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTD 829

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
            E K   L  HSEKLA+ YG++ T    PIR+ KNLR+C DCH+A  FIS +   EI+ R
Sbjct: 830 QEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVAR 889

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D+ RFHHFK+G C+C  YW
Sbjct: 890 DAKRFHHFKDGVCSCGDYW 908



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 242/462 (52%), Gaps = 34/462 (7%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           ++A +++ QM R G  P+E T+  +LKAC    S + G  +HA I  SGF S+V V  AL
Sbjct: 12  EDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETAL 71

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MY +C ++  A+ +FD+M +    +++SW  ++   A  G  +     F +M  +  +
Sbjct: 72  VNMYVKCGSIDDAQLIFDKMVER---NVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSR 292
             +  + V+ L+A AS          G +E  K+V           D+   NA+V  Y++
Sbjct: 129 P-NSYTYVSILNANAS---------AGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 178

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            GS +DA  +F  M    V+ ++ +W+ +I G AQ G G EA  +F QM+  G  PN+ T
Sbjct: 179 SGSIDDARVVFDGM----VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTT 234

Query: 353 LVSLLSGCA--SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            +S+L+  A  S GAL   KE H +  K           DL V NALI MYAKC S+D A
Sbjct: 235 YLSILNASAITSTGALEWVKEVHKHAGK------AGFISDLRVGNALIHMYAKCGSIDDA 288

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           R++FD +   +RDV +W  MIG  +QNG  ++A  +F +M QQ+  V P++ T    L  
Sbjct: 289 RLVFDGMC--DRDVISWNAMIGGLAQNGCGHEAFTIFLKM-QQEGFV-PDSTTYLSLLNT 344

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
                A  + +++H + +       +  V +  + MY R G ID A+++FD L  RNV +
Sbjct: 345 HVSTGAWEWVKEVHKHAVEVGLVSDLR-VGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTT 403

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           W +++ G      G +A   F QMR+EG  PD  TF+ +L A
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445



 Score =  200 bits (508), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 241/475 (50%), Gaps = 30/475 (6%)

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           ++  YA+ G AE  + ++++M  +   Q + ++ ++ L AC S  +   GK+        
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKI-----HA 54

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
            + +     DV    A+V  Y + GS +DA  +F KM    V+ NV++W+ +I G A  G
Sbjct: 55  HIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKM----VERNVISWTVMIGGLAHYG 110

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
            G EA   F QMQ  G  PN  T VS+L+  AS GAL   KE H + +   L++      
Sbjct: 111 RGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL------ 164

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           DL V NAL+ MYAK  S+D ARV+FD +    RD+ +WTVMIG  +Q+G   +A +LF Q
Sbjct: 165 DLRVGNALVHMYAKSGSIDDARVVFDGMV--ERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 222

Query: 450 MFQQDKLVKPNAFTLSCALMACA--RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
           M +   L  PN  T    L A A     AL + +++H +  +  +   +  V N LI MY
Sbjct: 223 MERGGCL--PNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLR-VGNALIHMY 279

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
           ++ G ID AR+VFD +  R+V+SW +++ G   +G G +A   F +M++EG  PD  T+L
Sbjct: 280 AKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYL 339

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            LL     +G  +  +K     + E G+ +     +  V +  R   +D+A  + + + +
Sbjct: 340 SLLNTHVSTGAWEW-VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAV 398

Query: 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEK--DGSYTLLSNIYANAGR 680
                 W A++ G    A  + G  A +  L++  E     + T ++ + AN G 
Sbjct: 399 RNVT-TWNAMIGGV---AQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGE 449



 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 194/375 (51%), Gaps = 26/375 (6%)

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I GYA+ G+  +A+ V+ QM+  G +PN +T +S+L  C S  +L  GK+ H + I+  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQ-- 58

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                    D+ V  AL++MY KC S+D A+++FD +  +N  V +WTVMIG  +  G  
Sbjct: 59  ----SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERN--VISWTVMIGGLAHYGRG 112

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +A   F QM Q++  + PN++T    L A A   AL + +++H++ + N    L   V 
Sbjct: 113 QEAFHRFLQM-QREGFI-PNSYTYVSILNANASAGALEWVKEVHSHAV-NAGLALDLRVG 169

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N L+ MY++SG ID ARVVFD + +R++ SWT ++ G   HG G +A   F QM + G  
Sbjct: 170 NALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL 229

Query: 561 PDGVTFLVLLYACSHSGMVDQG-LKYFDSMSKEFGISARAEHYA---CIVDLLGRANRLD 616
           P+  T+L +L A   S +   G L++   + K  G +           ++ +  +   +D
Sbjct: 230 PNLTTYLSILNA---SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSID 286

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE----KDGSYTLLS 672
           +A  + +GM  +   I W A++ G    A    G  A    L+++ E       +Y  L 
Sbjct: 287 DARLVFDGM-CDRDVISWNAMIGGL---AQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342

Query: 673 NIYANAGRWKDVARI 687
           N + + G W+ V  +
Sbjct: 343 NTHVSTGAWEWVKEV 357


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/743 (38%), Positives = 425/743 (57%), Gaps = 40/743 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+    R  L D    L  QM   G +P+ +TF  VL A  +      G  VH
Sbjct: 169 NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A+I  +GF+   FVCNAL+ MY + + +  A  +FD M    + D V+WN ++  YA  G
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV---VRDSVTWNIMIGGYAAIG 285

Query: 219 DAEGGLMLFARMTGDVKVQGDGVS---LVNALSACASLGTWSRGKQ--CGMMEEAKKVFE 273
               G  +F RM    ++ G  +S      AL  C+     +  KQ  CG+++   +  +
Sbjct: 286 FYLEGFQMFHRM----RLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ 341

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            ++        A++  YS+  S ++AF LF      +   NVVTW+A+I G+ Q  +  +
Sbjct: 342 DIRT-------ALMVTYSKCSSVDEAFKLFS---MADAAHNVVTWTAMIGGFVQNNNNKK 391

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+D+F QM   G+ PN  T  ++L+G  S     L  + H   IK       S      V
Sbjct: 392 AVDLFCQMSREGVRPNHFTYSTVLAGKPSS----LLSQLHAQIIKAYYEKVPS------V 441

Query: 394 INALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
             AL+D Y K  +V + ARV +   A   +D+  W+ M+   +Q   +  A+ +F Q+ +
Sbjct: 442 ATALLDAYVKTGNVVESARVFYSIPA---KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVK 498

Query: 453 QDKLVKPNAFTLSCALMACARLAA-LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +   VKPN +T S  + AC+  AA +  G+QIHA  +++     +  V++ L+ MYS+ G
Sbjct: 499 EG--VKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC-VSSALLTMYSKKG 555

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           +I++A  VF   ++R++VSW S++TGYG HG   KA   F  M+ +GL  D VTF+ +L 
Sbjct: 556 NIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLT 615

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           AC+H+G+V++G KYF+ M K++ I  + EHY+C+VDL  RA   D+A+++I GMP   +P
Sbjct: 616 ACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASP 675

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
            IW  LL  CR+H N+ELG+LAA +L+ L+      Y LLSNI+A AG W++ A +R LM
Sbjct: 676 TIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLM 735

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
               VKK  GCSW++ K    +F  GD +HP S  +Y  L  L  ++K MGY P T++  
Sbjct: 736 DERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVF 795

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           HDV++E K  +L +HSE+LA+AYG++   PG PI+I KNLRICGDCH+ I  IS+I    
Sbjct: 796 HDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERT 855

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           +I+RDSNRFHHFK G C+C GYW
Sbjct: 856 LIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 161/610 (26%), Positives = 269/610 (44%), Gaps = 85/610 (13%)

Query: 83  PSPALSLLQRISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV 141
           PS      Q    +P   +  +N L+    R      A  LF  +   G   D  T    
Sbjct: 51  PSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCA 110

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LK CG L     G  VH     SGF  +V V  +L+ MY + +     R +FDEM   GI
Sbjct: 111 LKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM---GI 167

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            ++VSW ++++ YA++G  +  + L  +M  +  V  +G +    L A A       G Q
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQME-GVNPNGFTFATVLGALADESIIEGGVQ 226

Query: 262 ----------------CG----------MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                           C           M+ +A+ VF+ M V+D V+WN M+ GY+ IG 
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
           + + F +F +MR   VKL+                         +  FC          +
Sbjct: 287 YLEGFQMFHRMRLAGVKLS-------------------------RTVFC----------T 311

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C+    L   K+ HC  +K              +  AL+  Y+KC SVD A  +F 
Sbjct: 312 ALKLCSQQRELNFTKQLHCGVVKNGYEFAQD------IRTALMVTYSKCSSVDEAFKLF- 364

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
           ++A    +V TWT MIG + QN     A+ LF QM ++   V+PN FT S  L    + +
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREG--VRPNHFTYSTVL--AGKPS 420

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +L    Q+HA +++  YE  +P VA  L+D Y ++G++  +  VF ++  +++V+W++++
Sbjct: 421 SLL--SQLHAQIIKAYYEK-VPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML 477

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TG       +KA   F Q+ KEG+ P+  TF  ++ ACS S    +  K   + + + G 
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGK 537

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN----VELGE 651
           S      + ++ +  +   + E+ E +     E   + W +++ G   H +    +E+ +
Sbjct: 538 SNALCVSSALLTMYSKKGNI-ESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQ 596

Query: 652 LAANRLLELE 661
           +  N+ L L+
Sbjct: 597 IMQNQGLPLD 606


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 299/848 (35%), Positives = 476/848 (56%), Gaps = 44/848 (5%)

Query: 8   FPLLKSKTPLT--LNHLFTNIKLFSVTTT----------PCIKITSLLLRQC---KSLTQ 52
           FP   +  PLT  L     N +L    +T          P ++  SL L++C   +S   
Sbjct: 25  FPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDI 84

Query: 53  VYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRA 110
             L+H+++   +L    V  + LI+ Y        A S+  R+  S   +  W+A++   
Sbjct: 85  GTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVSCF 143

Query: 111 VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSN 169
               +   A   F+ M+  G++P+EY F    +AC        G S+   +  +G+  S+
Sbjct: 144 ANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSD 203

Query: 170 VFVCNALMAMY--ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           V V   L+ M+   R D +S A ++F++M +    + V+W  ++    Q G A   + LF
Sbjct: 204 VCVGCGLIDMFVKGRGDLVS-AFKVFEKMPER---NAVTWTLMITRLMQFGYAGEAIDLF 259

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
             M      + D  +L   +SACA++     G+Q      ++ +   + +   V    ++
Sbjct: 260 LDMIFS-GYEPDRFTLSGVISACANMELLLLGQQL----HSQAIRHGLTLDRCVGC-CLI 313

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG-HGHEALDVFRQMQFCGL 346
             Y++  S + +    +K+  + +  NV +W+A+I GY Q+G +  EALD+FR M    +
Sbjct: 314 NMYAKC-SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            PN  T  S L  CA++ AL +G++   + +K   S          V N+LI MYA+   
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC------VANSLISMYARSGR 426

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +D AR  FD +  KN  + ++  +I +Y++N  + +AL LF ++  +D+ +  +AFT + 
Sbjct: 427 IDDARKAFDILFEKN--LISYNTVIDAYAKNLNSEEALELFNEI--EDQGMGASAFTFAS 482

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L   A +  +  G QIHA V+++  + L   V N LI MYSR G+I++A  VF++++ R
Sbjct: 483 LLSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAFQVFEDMEDR 541

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NV+SWTS++TG+  HG   +A   F +M +EG+ P+ VT++ +L ACSH G+V++G K+F
Sbjct: 542 NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHF 601

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
            SM  E G+  R EHYACIVD+LGR+  L EA++ I  MP +   ++W   L  CR+H N
Sbjct: 602 KSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGN 661

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           +ELG+ AA  ++E E     +Y LLSN+YA+  +W +V+ IR  MK   + K  GCSWV+
Sbjct: 662 LELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVE 721

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
            +     F+VGD +HP++ +IY+ L  L  +IK +GYVP   F LHDV++E+K  LLF+H
Sbjct: 722 VENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQH 781

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEK+A+A+G+++T+   PIR+ KNLRICGDCHSAI +ISM    EII+RD+NRFHH K+G
Sbjct: 782 SEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDG 841

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 842 RCSCNEYW 849


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/743 (38%), Positives = 425/743 (57%), Gaps = 40/743 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+    R  L D    L  QM   G +P+ +TF  VL A  +      G  VH
Sbjct: 169 NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A+I  +GF+   FVCNAL+ MY + + +  A  +FD M    + D V+WN ++  YA  G
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV---VRDSVTWNIMIGGYAAIG 285

Query: 219 DAEGGLMLFARMTGDVKVQGDGVS---LVNALSACASLGTWSRGKQ--CGMMEEAKKVFE 273
               G  +F RM    ++ G  +S      AL  C+     +  KQ  CG+++   +  +
Sbjct: 286 FYLEGFQMFHRM----RLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ 341

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            ++        A++  YS+  S ++AF LF      +   NVVTW+A+I G+ Q  +  +
Sbjct: 342 DIRT-------ALMVTYSKCSSVDEAFKLFS---MADAAHNVVTWTAMIGGFVQNNNNEK 391

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+D+F QM   G+ PN  T  ++L+G  S     L  + H   IK       S      V
Sbjct: 392 AVDLFCQMSREGVRPNHFTYSTVLAGKPSS----LLSQLHAQIIKAYYEKVPS------V 441

Query: 394 INALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
             AL+D Y K  +V + ARV +   A   +D+  W+ M+   +Q   +  A+ +F Q+ +
Sbjct: 442 ATALLDAYVKTGNVVESARVFYSIPA---KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVK 498

Query: 453 QDKLVKPNAFTLSCALMACARLAA-LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +   VKPN +T S  + AC+  AA +  G+QIHA  +++     +  V++ L+ MYS+ G
Sbjct: 499 EG--VKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC-VSSALLTMYSKKG 555

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           +I++A  VF   ++R++VSW S++TGYG HG   KA   F  M+ +GL  D VTF+ +L 
Sbjct: 556 NIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLT 615

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           AC+H+G+V++G KYF+ M K++ I  + EHY+C+VDL  RA   D+A+++I GMP   +P
Sbjct: 616 ACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASP 675

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
            IW  LL  CR+H N+ELG+LAA +L+ L+      Y LLSNI+A AG W++ A +R LM
Sbjct: 676 TIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLM 735

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
               VKK  GCSW++ K    +F  GD +HP S  +Y  L  L  ++K MGY P T++  
Sbjct: 736 DERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVF 795

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           HDV++E K  +L +HSE+LA+AYG++   PG PI+I KNLRICGDCH+ I  IS+I    
Sbjct: 796 HDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERT 855

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           +I+RDSNRFHHFK G C+C GYW
Sbjct: 856 LIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 161/610 (26%), Positives = 269/610 (44%), Gaps = 85/610 (13%)

Query: 83  PSPALSLLQRISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV 141
           PS      Q    +P   +  +N L+    R      A  LF  +   G   D  T    
Sbjct: 51  PSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCA 110

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LK CG L     G  VH     SGF  +V V  +L+ MY + +     R +FDEM   GI
Sbjct: 111 LKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM---GI 167

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            ++VSW ++++ YA++G  +  + L  +M  +  V  +G +    L A A       G Q
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQME-GVNPNGFTFATVLGALADESIIEGGVQ 226

Query: 262 ----------------CG----------MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                           C           M+ +A+ VF+ M V+D V+WN M+ GY+ IG 
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
           + + F +F +MR   VKL+                         +  FC          +
Sbjct: 287 YLEGFQMFHRMRLAGVKLS-------------------------RTVFC----------T 311

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C+    L   K+ HC  +K              +  AL+  Y+KC SVD A  +F 
Sbjct: 312 ALKLCSQQRELNFTKQLHCGVVKNGYEFAQD------IRTALMVTYSKCSSVDEAFKLF- 364

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
           ++A    +V TWT MIG + QN     A+ LF QM ++   V+PN FT S  L    + +
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREG--VRPNHFTYSTVL--AGKPS 420

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +L    Q+HA +++  YE  +P VA  L+D Y ++G++  +  VF ++  +++V+W++++
Sbjct: 421 SLL--SQLHAQIIKAYYEK-VPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML 477

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TG       +KA   F Q+ KEG+ P+  TF  ++ ACS S    +  K   + + + G 
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGK 537

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN----VELGE 651
           S      + ++ +  +   + E+ E +     E   + W +++ G   H +    +E+ +
Sbjct: 538 SNALCVSSALLTMYSKKGNI-ESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQ 596

Query: 652 LAANRLLELE 661
           +  N+ L L+
Sbjct: 597 IMQNQGLPLD 606


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/848 (35%), Positives = 476/848 (56%), Gaps = 44/848 (5%)

Query: 8   FPLLKSKTPLT--LNHLFTNIKLFSVTTT----------PCIKITSLLLRQC---KSLTQ 52
           FP   +  PLT  L     N +L    +T          P ++  SL L++C   +S   
Sbjct: 25  FPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDI 84

Query: 53  VYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRA 110
             L+H+++   +L    V  + LI+ Y        A S+ Q +  S   +  W+A++   
Sbjct: 85  GTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSR-DLISWSAMVSCF 143

Query: 111 VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSN 169
               +   A   F+ M+  G++P+EY F    +AC        G S+   +  +G+  S+
Sbjct: 144 ANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSD 203

Query: 170 VFVCNALMAMY--ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           V V   L+ M+   R D +S A ++F++M +    + V+W  ++    Q G A   + LF
Sbjct: 204 VCVGCGLIDMFVKGRGDLVS-AFKVFEKMPER---NAVTWTLMITRLMQFGYAGEAIDLF 259

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
             M      + D  +L   +SACA++     G+Q      ++ +   + +   V    ++
Sbjct: 260 LEMILS-GYEPDRFTLSGVISACANMELLLLGQQL----HSQAIRHGLTLDRCVGC-CLI 313

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG-HGHEALDVFRQMQFCGL 346
             Y++  S + +    +K+  + +  NV +W+A+I GY Q+G +  EALD+FR M    +
Sbjct: 314 NMYAKC-SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            PN  T  S L  CA++ AL +G++   + +K   S          V N+LI MYA+   
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC------VANSLISMYARSGR 426

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +D AR  FD +  KN  + ++  +I +Y++N  + +AL LF ++  +D+ +  +AFT + 
Sbjct: 427 IDDARKAFDILFEKN--LISYNTVIDAYAKNLNSEEALELFNEI--EDQGMGASAFTFAS 482

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L   A +  +  G QIHA V+++  + L   V N LI MYSR G+I++A  VF++++ R
Sbjct: 483 LLSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAFQVFEDMEDR 541

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NV+SWTS++TG+  HG   +A   F +M +EG+ P+ VT++ +L ACSH G+V++G K+F
Sbjct: 542 NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHF 601

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
            SM  E G+  R EHYAC+VD+LGR+  L EA++ I  MP +   ++W   L  CR+H N
Sbjct: 602 KSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGN 661

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           +ELG+ AA  ++E E     +Y LLSN+YA+  +W +V+ IR  MK   + K  GCSWV+
Sbjct: 662 LELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVE 721

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
            +     F+VGD +HP++ +IY+ L  L  +IK +GYVP   F LHDV++E+K  LLF+H
Sbjct: 722 VENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQH 781

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEK+A+A+G+++T+   PIR+ KNLRICGDCHSAI +ISM    EII+RD+NRFHH K+G
Sbjct: 782 SEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDG 841

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 842 RCSCNEYW 849


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 295/779 (37%), Positives = 422/779 (54%), Gaps = 51/779 (6%)

Query: 57  HQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLP 116
           H  + +Q  TH   +H I     HN P P  S     +P       +N LI       LP
Sbjct: 17  HSHLNLQQ-THQLHAHFIKTQF-HN-PHPFFSQ-SHFTPEAN----YNLLISSYTNNHLP 68

Query: 117 DNAFRLFLQMMRRGWHP-DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
             +F  +L M        D +  P +LKAC +  S   G  +H     +GF S+VFVCNA
Sbjct: 69  QASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNA 128

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           LM MY +C  L  AR +FD+M +    D+VSW T++  Y +S  A G  +   R    V 
Sbjct: 129 LMNMYEKCGCLVSARLVFDQMPER---DVVSWTTMLGCYVRS-KAFGEALRLVREMQFVG 184

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           V+  GV+L++ ++   +L     G+            E+M+V       A++  Y + G 
Sbjct: 185 VKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTT---ALIDMYCKGGC 241

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A  LF ++     K +VV+W+ +IAG  +     E    F +M    L PN +TL+S
Sbjct: 242 LASAQRLFDRLS----KRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLS 297

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           L++ C  VG L LGK  H Y ++    +       L ++ ALIDMY KC  V  AR +F+
Sbjct: 298 LITECGFVGTLDLGKWFHAYLLRNGFGMS------LALVTALIDMYGKCGQVGYARALFN 351

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  K +DV  W+V+I +Y+     +    LF +M   D  VKPN  T+   L  CA   
Sbjct: 352 GV--KKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNND--VKPNNVTMVSLLSLCAEAG 407

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           AL  G+  HAY+ R+  E+ +  +   LI+MY++ GD+  AR +F+   QR++  W ++M
Sbjct: 408 ALDLGKWTHAYINRHGLEVDV-ILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMM 466

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            G+ MHG G +A   F +M   G+ P+ +TF+ + +ACSHSG++                
Sbjct: 467 AGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM---------------- 510

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
               EHY C+VDLLGRA  LDEA  +IE MPM P  IIW ALL  C++H N+ LGE+AA 
Sbjct: 511 ----EHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAAR 566

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           ++LEL+ +  G   L SNIYA+A RW DV  +R  M H+G+KK PG SW++       F 
Sbjct: 567 KILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFK 626

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
            GD+   Q+ K+YE++  +  +++  GY P T+  L ++D+EEK   L  HSEKLA A+G
Sbjct: 627 SGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFG 686

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +++TAPGTPIRI KNLRIC DCH+A   +S I    II+RD NRFHHF EG C+C GYW
Sbjct: 687 LISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 295/820 (35%), Positives = 455/820 (55%), Gaps = 37/820 (4%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCKS---LTQVYLIHQQIIVQNLTH--VPPSHLIAA 76
           L+  +    V  TP   + S +L  C       Q  L+H Q+  Q      V  + LIA 
Sbjct: 130 LYHQMHCSGVVPTP--YVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIAL 187

Query: 77  YVSHNAPSPALSLLQRI-SPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
           Y+   +    LSL +R+ S  P+     +N LI R  +    ++A  +F +M   GW PD
Sbjct: 188 YLRFGS----LSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
             T   +L AC  +     G  +H+ +  +G   +  +  +L+ +Y +C  +  A ++F 
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
              +    ++V WN ++ AY Q  D      LF +M     V+ +  +    L  C   G
Sbjct: 304 SGDRT---NVVLWNLMLVAYGQISDLAKSFDLFCQMVA-AGVRPNEFTYPCLLRTCTYAG 359

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
             + G+Q  ++   K  FE     D+     ++  YS+ G  + A  + + +  ++V   
Sbjct: 360 EINLGEQIHLLS-IKTGFE----SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDV--- 411

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V+W+++IAGY Q     EAL+ F+ MQ  G+ P+ + L S +S CA + A+  G++ H 
Sbjct: 412 -VSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIH- 469

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
               RV  V G +  D+ + NAL+++YA+C     A  +F+AI  +++D  TW  M+  +
Sbjct: 470 ---SRVY-VSG-YSADVSIWNALVNLYARCGRSKEAFSLFEAI--EHKDKITWNGMVSGF 522

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q+G   +AL +F +M+Q    VK N FT   ++ A A LA ++ G+QIHA V++     
Sbjct: 523 AQSGLYEEALEVFIKMYQAG--VKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTS 580

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
               VAN LI +Y + G I+ A++ F  + +RN VSW +++T    HG G +A   FDQM
Sbjct: 581 ETE-VANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQM 639

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           ++EGL P+ VTF+ +L ACSH G+V++GL YF SMS E GI  R +HYAC+VD+LGRA +
Sbjct: 640 KQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQ 699

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           LD A + +E MP+    ++W  LL+ CR+H N+E+GELAA  LLELE     SY LLSN 
Sbjct: 700 LDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNA 759

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA  G+W     +R +MK  GV+K PG SW++ K     FFVGDR HP + +IY+ LA L
Sbjct: 760 YAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADL 819

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
             R+  +GY+    F  H+ + E+K    F HSEKLA+A+G+++  P  P+R+ KNLR+C
Sbjct: 820 DDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVC 879

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCH+ + F S ++  EI+LRD  RFHHF  G+C+C  +W
Sbjct: 880 NDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 204/445 (45%), Gaps = 42/445 (9%)

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC-ASLGTW-------S 257
           S N  +  +    D E  L LFA      +  G  V    AL  C  S+  W       +
Sbjct: 8   SLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGS-VDFACALRECRGSVKHWPLVPVIHA 66

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
           +   CG+ E            D ++ N ++  Y++ G  + A  +F+++   +     V+
Sbjct: 67  KAITCGLGE------------DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDN----VS 110

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W A+++GYA+ G G EA+ ++ QM   G+ P    L S+LS C        G+  H    
Sbjct: 111 WVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVY 170

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K+     GS   + +V NALI +Y +  S+ +A  +F  +   +R   T+  +I  ++Q 
Sbjct: 171 KQ-----GS-CSETVVGNALIALYLRFGSLSLAERVFSEMPYCDR--VTFNTLISRHAQC 222

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G    AL +F +M        P+  T++  L ACA +  L  G+Q+H+Y+L+     + P
Sbjct: 223 GNGESALEIFEEMRLSG--WTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAG---MSP 277

Query: 498 --FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
              +   L+D+Y + G I  A  +F +  + NVV W  ++  YG      K+   F QM 
Sbjct: 278 DYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMV 337

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G+ P+  T+  LL  C+++G ++ G +    +S + G  +       ++D+  +   L
Sbjct: 338 AAGVRPNEFTYPCLLRTCTYAGEINLG-EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWL 396

Query: 616 DEAVELIEGMPMEPTPIIWVALLNG 640
           D+A  ++E +  +   + W +++ G
Sbjct: 397 DKARRILEVLEAKDV-VSWTSMIAG 420


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/776 (36%), Positives = 419/776 (53%), Gaps = 111/776 (14%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP----------------- 199
           VHA + +SGF     + N L+ +Y++   L+YAR LFDE+ QP                 
Sbjct: 35  VHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGD 94

Query: 200 -------------GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
                        G+ D V +N ++ AY+ + D    + LF  M  D   + D  +  + 
Sbjct: 95  LKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRD-NFRPDNYTFTSV 153

Query: 247 LSACASLGTWSRGKQC--------------------------------------GMMEEA 268
           L A A +    + K C                                       +M EA
Sbjct: 154 LGALALVA--EKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEA 211

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           +K+F+ M  +D +SW  ++TGY +    + A    K+      K   V W+A+I+GYA R
Sbjct: 212 RKLFDEMPNRDELSWTTIITGYVKNNDLDAA----KEFLNGTSKKLGVAWNAMISGYAHR 267

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   EA ++FR+M    ++ +  T  S++S CA+ G   LGKE H Y +K   +V    P
Sbjct: 268 GLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK---TVANPAP 324

Query: 389 DDLM-VINALIDMYAKCKSVDVARVMFDAIAPKN-------------------------- 421
           D  M V NALI  Y KC  VD+A+ +F+ +  ++                          
Sbjct: 325 DVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNE 384

Query: 422 ---RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
              +++ +W +MI   +Q G A +AL  F +M  Q    +P  +  + A+++C+ L +L+
Sbjct: 385 MPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG--FEPCDYAFAGAIISCSVLGSLK 442

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            GRQ+HA V+R  YE  +    N LI MY+R G +D A  +F N+   + +SW +++   
Sbjct: 443 HGRQLHAQVVRYGYESSLS-AGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAAL 501

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
           G HG G +A   F++M KEG+ PD ++FL ++ ACSH+G+V +G KYFDSM   +G++  
Sbjct: 502 GQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPD 561

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHYA I+DLL RA +  EA E++E MP EP   IW ALL GCRIH N++LG  AA RL 
Sbjct: 562 EEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLF 621

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           EL+ + DG+Y LLSN+YA AG+W D+A++R LM+  GVKK PGCSW++ +    +F VGD
Sbjct: 622 ELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGD 681

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
             HP+ ++IY  L  LV  ++ +GYVP T   LHDV+ + K   L  HSEKLA+AYG + 
Sbjct: 682 ANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMK 741

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              G  +R+ KNLRICGDCH+A  F+S ++  EI++RD  RFHHF++G C+C  YW
Sbjct: 742 LPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 153/582 (26%), Positives = 250/582 (42%), Gaps = 108/582 (18%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRI-SPSPF----SVFWWNALIRRAVRLRLPDNAFRL 122
           V  + LIAAY    + +  L L ++I S +P     SVF+ NA+I           A  L
Sbjct: 80  VARTTLIAAY----SAAGDLKLSRKIFSDTPLGMRDSVFY-NAMITAYSHNHDGHAAIEL 134

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPS-SRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           F  M R  + PD YTF  VL A   +    +    +H  +  SG      V NAL++ Y 
Sbjct: 135 FCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYV 194

Query: 182 RCDT---------LSYARQLFDEMFQPGICDIVSWNTIVAAYAQ---------------- 216
           +C           ++ AR+LFDEM      D +SW TI+  Y +                
Sbjct: 195 KCAASPSAQSSSLMAEARKLFDEMPNR---DELSWTTIITGYVKNNDLDAAKEFLNGTSK 251

Query: 217 ----------SGDAEGGLML-----FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
                     SG A  GL L     F +M    K+Q D  +  + +S CA+ G +  GK+
Sbjct: 252 KLGVAWNAMISGYAHRGLYLEAFEMFRKMIMS-KIQLDEFTFTSVISVCANAGCFRLGKE 310

Query: 262 ------------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
                                         CG ++ A+++F +M  +D+VSWN +++GY 
Sbjct: 311 MHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYV 370

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
            +   ++A + F +M ++    N+++W  +I+G AQ G   EAL  F +M+  G EP   
Sbjct: 371 NVRCMDEAKSFFNEMPEK----NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDY 426

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
                +  C+ +G+L  G++ H   ++        +   L   NALI MYA+C  VD A 
Sbjct: 427 AFAGAIISCSVLGSLKHGRQLHAQVVRY------GYESSLSAGNALITMYARCGVVDAAH 480

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  I     D  +W  MI +  Q+G    A+ LF +M ++  L  P+  +    + AC
Sbjct: 481 CLF--INMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGIL--PDRISFLTVISAC 536

Query: 472 ARLAALRFGRQ----IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QR 526
           +    ++ GR+    +H     N  E     +    ID+  R+G    A+ V +++  + 
Sbjct: 537 SHAGLVKEGRKYFDSMHNVYGVNPDEEHYARI----IDLLCRAGKFSEAKEVMESMPFEP 592

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
               W +L+ G  +HG  D    A +++ +     DG   L+
Sbjct: 593 GAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLL 634



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 29/300 (9%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +++ YV+      A S    +     ++  W  +I    ++   + A + F +M  +G+ 
Sbjct: 365 ILSGYVNVRCMDEAKSFFNEMPEK--NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFE 422

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P +Y F   + +C  L S + G  +HA +   G++S++   NAL+ MYARC  +  A  L
Sbjct: 423 PCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCL 482

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M  P + D +SWN ++AA  Q G     + LF  M  +  +  D +S +  +SAC+ 
Sbjct: 483 FINM--PCV-DAISWNAMIAALGQHGQGTQAIELFEEMLKE-GILPDRISFLTVISACS- 537

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI-------GSFEDAFALFKK 305
                     G+++E +K F+ M   +V   N     Y+RI       G F +A  + + 
Sbjct: 538 --------HAGLVKEGRKYFDSM--HNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMES 587

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M  E        W A++AG   R HG+  L +    +   L+P       LLS   +V  
Sbjct: 588 MPFEP---GAPIWEALLAGC--RIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAG 642



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
             R +HA+++ + ++     + N LID+YS+S  ++ AR +FD + Q ++V+ T+L+  Y
Sbjct: 31  LARPVHAHMIASGFQPR-GHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY 89

Query: 539 GMHG 542
              G
Sbjct: 90  SAAG 93


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/681 (39%), Positives = 400/681 (58%), Gaps = 25/681 (3%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VH  +   GF +   VCNAL++ YA+ + +  A  +FDEM Q    DI+SWN+I+  
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQR---DIISWNSIIGG 59

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
            A +G  +  + LF RM  + + + D  +L++ + AC      S     G +     V  
Sbjct: 60  CASNGLYDKAVELFVRMWLEGQ-ELDSTTLLSVMPACVQ----SHYSFIGGVVHGYSVRT 114

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            + + +    NA++  YS    +     +F+ M Q+NV    V+W+A+I  Y + GH  +
Sbjct: 115 GL-ISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNV----VSWTAMITSYTRAGHFDK 169

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
              +F++M   G+ P+V  + S L   A   +L  GK  H Y I+  +       + L V
Sbjct: 170 VAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIE------EVLPV 223

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NAL++MY KC  ++ AR +FD +  K  D  +W  +IG YS++  AN+A  LF +M  Q
Sbjct: 224 ANALMEMYVKCGYMEEARFIFDHVTKK--DTISWNTLIGGYSRSNLANEAFTLFNEMLLQ 281

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              ++PNA T++C L A A L++L  GR++HAY +R  Y +   FVAN L+DMY + G +
Sbjct: 282 ---LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGY-LEDNFVANALVDMYVKCGAL 337

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             AR +FD L  +N++SWT ++ GYGMHG G  A   F+QM+  G+ PD  +F  +LYAC
Sbjct: 338 LLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYAC 397

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SHSG+ D+G ++F++M  E  I  + +HYAC+VDLL     L EA E IE MP+EP   I
Sbjct: 398 SHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSI 457

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           WV+LL GCRIH NV+L E  A  + ELE E  G Y LL+NIYA A RW+ V ++++ +  
Sbjct: 458 WVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGG 517

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            G+++  GCSW++ +     FF  +R HPQ  +I E L  + +R++  G+ P+  +AL  
Sbjct: 518 RGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMG 577

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
            DD    + L  HS KLA+A+G+L  + G PIR+TKN R+C  CH A  FIS +   EII
Sbjct: 578 ADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREII 637

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRDSNRFHHF+EG C+C+GYW
Sbjct: 638 LRDSNRFHHFEEGRCSCRGYW 658



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 145/531 (27%), Positives = 234/531 (44%), Gaps = 93/531 (17%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI+ Y   N    AL +   +      +  WN++I       L D A  LF++M   G  
Sbjct: 25  LISFYAKSNRIEDALMVFDEMPQR--DIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D  T   V+ AC +   S  G  VH     +G  S   + NAL+ MY+ C       ++
Sbjct: 83  LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKI 142

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M Q    ++VSW  ++ +Y ++G  +    LF  M G   ++ D  ++ +AL A A 
Sbjct: 143 FRNMEQK---NVVSWTAMITSYTRAGHFDKVAGLFQEM-GLEGIRPDVFAITSALDAFAG 198

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
             +   GK                          +CG MEEA+ +F+ +  KD +SWN +
Sbjct: 199 NESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTL 258

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + GYSR     +AF LF +M                                       L
Sbjct: 259 IGGYSRSNLANEAFTLFNEM------------------------------------LLQL 282

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            PN VT+  +L   AS+ +L  G+E H Y ++R       + +D  V NAL+DMY KC +
Sbjct: 283 RPNAVTMACILPAAASLSSLERGREMHAYAVRR------GYLEDNFVANALVDMYVKCGA 336

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           + +AR +FD +  KN  + +WT+MI  Y  +G   DA+ALF QM  +   ++P+A + S 
Sbjct: 337 LLLARRLFDMLTNKN--LISWTIMIAGYGMHGRGRDAIALFEQM--KGSGIQPDAGSFSA 392

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK 524
            L AC+  + LR         +RN++  + P + +  C++D+   +G++  A    + + 
Sbjct: 393 ILYACSH-SGLRDEGWRFFNAMRNEHR-IEPKLKHYACMVDLLCHTGNLKEAYEFIETMP 450

Query: 525 -QRNVVSWTSLMTGYGMH---GLGDK-AHWAFDQMRKEGLAPDGVTFLVLL 570
            + +   W SL+ G  +H    L +K A   F+      L P+   + VLL
Sbjct: 451 IEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFE------LEPENTGYYVLL 495


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/733 (37%), Positives = 427/733 (58%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   V       A  LF +M   G   + YTF   L+AC      + G  +HAVI 
Sbjct: 219 WNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVIL 278

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S   ++V+V NAL+AMYA C  +  A ++F  M      D VSWNT+++   Q+     
Sbjct: 279 KSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML---FKDCVSWNTLLSGMVQNDMYSD 335

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +  F  M  D   + D VS++N ++A         G +         +   M +     
Sbjct: 336 AINHFQDMQ-DSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIG---- 390

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N+++  Y +    +   + F+ M ++++    ++W+ +IAGYAQ     +AL++ R++Q
Sbjct: 391 -NSLIDMYGKCCCVKYMGSAFEYMPEKDL----ISWTTIIAGYAQNECHLDALNLLRKVQ 445

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              ++ + + + S+L  C+ + +  L KE H Y +K  L+       D+++ NA++++Y 
Sbjct: 446 LEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA-------DILIQNAIVNVYG 498

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +   VD AR +F++I  K  D+ +WT MI     NG A +AL LF  + + +  ++P+  
Sbjct: 499 ELALVDYARHVFESINSK--DIVSWTSMITCCVHNGLAIEALELFNSLIETN--IEPDLI 554

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           TL   L A A L++L+ G++IH +++R  +  L   +AN L+DMY+R G ++ AR +F+ 
Sbjct: 555 TLVSVLYAAAALSSLKKGKEIHGFLIRKGF-FLEGLIANSLVDMYARCGTMENARNIFNY 613

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +KQR+++ WTS++   GMHG G  A   F +M  E + PD +TFL LLYACSHSG+V +G
Sbjct: 614 VKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEG 673

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            ++F+ M  E+ +    EHYAC+VDLL R+N L+EA   +  MP+EP+  +W ALL  CR
Sbjct: 674 KQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACR 733

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH+N +LGE+AA +LL+L +E  G+Y L+SN +A  GRW DV  +RS+MK   +KK+PGC
Sbjct: 734 IHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGC 793

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM-GYVPQTSFALHDVDDEEKGD 761
           SW++ +    TF   D++HPQ   IY  LA   + +K   GY  QT    HDV +EEK  
Sbjct: 794 SWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQ 853

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           +L+ HSE+LAL YG+L T+ GT +RITKNLRIC DCH+     S I    +++RD++RFH
Sbjct: 854 MLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFH 913

Query: 822 HFKEGSCTCKGYW 834
           HF+ G C+C  +W
Sbjct: 914 HFERGLCSCGDFW 926



 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 180/634 (28%), Positives = 309/634 (48%), Gaps = 34/634 (5%)

Query: 18  TLNHLFTNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQII-VQNL--THVPPS 71
           +L H FT+  L + T  P  +  S  L  C   K+L Q   +H   +  QN   +    +
Sbjct: 28  SLTHFFTD-PLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDT 86

Query: 72  HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
             +  Y    +   A+ +  ++S    ++F WNA+I   V       A  L+ +M   G 
Sbjct: 87  KFVHMYGKCGSFYDAVKVFDKMSER--TIFTWNAMIGACVSAGRYVEAIELYKEMRVLGV 144

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             D +TFP VLKACG     R G  +H V    G+   VFVCNAL+AMYA+C  L  AR 
Sbjct: 145 SLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARV 204

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LFD        D VSWN+I++A+   G++   L LF RM  +V V+ +  + V+AL AC 
Sbjct: 205 LFDSGLMEKD-DPVSWNSIISAHVGEGESLEALSLFRRMQ-EVGVESNTYTFVSALQACE 262

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                  G+    +     + +     DV   NA++  Y+  G  EDA  +FK M    +
Sbjct: 263 GPTFIKIGRGIHAV-----ILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSM----L 313

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             + V+W+ +++G  Q     +A++ F+ MQ  G +P+ V+++++++       LL G E
Sbjct: 314 FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGME 373

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y IK  +        ++ + N+LIDMY KC  V      F+ +  K  D+ +WT +I
Sbjct: 374 VHAYAIKHGID------SNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEK--DLISWTTII 425

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QN    DAL L  ++  +   V P    +   L+AC+ L + +  ++IH YVL+  
Sbjct: 426 AGYAQNECHLDALNLLRKVQLEKMDVDP--MMIGSILLACSGLKSEKLIKEIHGYVLKGG 483

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
              ++  + N ++++Y     +D AR VF+++  +++VSWTS++T    +GL  +A   F
Sbjct: 484 LADIL--IQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELF 541

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           + + +  + PD +T + +LYA +    + +G +    + ++ G          +VD+  R
Sbjct: 542 NSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRK-GFFLEGLIANSLVDMYAR 600

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
              ++ A  +   +      I+W +++N   +H 
Sbjct: 601 CGTMENARNIFNYVKQRDL-ILWTSMINANGMHG 633


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/737 (38%), Positives = 427/737 (57%), Gaps = 26/737 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNALI    ++     AF LF QM+  G  P   TF  VL AC        G  VH
Sbjct: 122 TVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVH 181

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A + ++GF S+  +  AL++MY +  ++  ARQ+FD +    I D+ ++N +V  YA+SG
Sbjct: 182 AQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH---IRDVSTFNVMVGGYAKSG 238

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           D E    LF RM   V ++ + +S ++ L  C +    + GK         +      V 
Sbjct: 239 DWEKAFELFYRMQ-QVGLKPNKISFLSILDGCWTPEALAWGKAV-----HAQCMNAGLVD 292

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+    +++  Y+  GS E A  +F  M+  +V    V+W+ +I GYA+ G+  +A  +F
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDV----VSWTVMIEGYAENGNIEDAFGLF 348

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD-GSHPDDLMVINAL 397
             MQ  G++P+ +T + +++ CA    L   +E H         VD      DL+V  AL
Sbjct: 349 ATMQEEGIQPDRITYMHIMNACAISANLNHAREIHS-------QVDIAGFGTDLLVSTAL 401

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           + MYAKC ++  AR +FDA+ P+ RDV +W+ MIG+Y +NG   +A   F  M + +  +
Sbjct: 402 VHMYAKCGAIKDARQVFDAM-PR-RDVVSWSAMIGAYVENGYGTEAFETFHLMKRSN--I 457

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           +P+  T    L AC  L AL  G +I+   ++      +P + N LI M ++ G ++ AR
Sbjct: 458 EPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVP-LGNALIIMNAKHGSVERAR 516

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD + +R+V++W +++ GY +HG   +A + FD+M KE   P+ VTF+ +L ACS +G
Sbjct: 517 YIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAG 576

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            VD+G ++F  + +  GI    + Y C+VDLLGRA  LDEA  LI+ MP++PT  IW +L
Sbjct: 577 FVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSL 636

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  CRIH N+++ E AA R L ++      Y  LS++YA AG W++VA++R +M+  G++
Sbjct: 637 LVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIR 696

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K  GC+W++      TF V DR+HP   +IY  LA L+  IK  GY+P T   LHDV ++
Sbjct: 697 KEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQ 756

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K + +  HSEKLA+AYG+L+   GTPIRI KNLR+C DCHSA  FIS +   EII RD+
Sbjct: 757 QKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDA 816

Query: 818 NRFHHFKEGSCTCKGYW 834
           +RFHHFK+G C+C  YW
Sbjct: 817 SRFHHFKDGVCSCGDYW 833



 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 171/596 (28%), Positives = 286/596 (47%), Gaps = 93/596 (15%)

Query: 105 ALIRR----AVRLRLPDNAFR-----------LFLQMMRRGWHPDEYTFPFVLKACGELP 149
           A++RR    +++L +P   FR           +  ++   G H D  T+  + + C EL 
Sbjct: 12  AVVRRRWFGSLQLPVPSARFRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTELR 71

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
            +  G  V   I   G   N++  N L+ +Y+ C  ++ ARQ+FD +       +V+WN 
Sbjct: 72  DAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENK---TVVTWNA 128

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------- 262
           ++A YAQ G  +    LF +M  D  ++   ++ ++ L AC+S    + GK+        
Sbjct: 129 LIAGYAQVGHVKEAFALFRQMV-DEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTA 187

Query: 263 -------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
                              G M++A++VF+ + ++DV ++N MV GY++ G +E AF LF
Sbjct: 188 GFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELF 247

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            +M+Q                                    GL+PN ++ +S+L GC + 
Sbjct: 248 YRMQQ-----------------------------------VGLKPNKISFLSILDGCWTP 272

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
            AL  GK  H   +   L       DD+ V  +LI MY  C S++ AR +FD +  K RD
Sbjct: 273 EALAWGKAVHAQCMNAGL------VDDIRVATSLIRMYTTCGSIEGARRVFDNM--KVRD 324

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           V +WTVMI  Y++NG   DA  LF  M  Q++ ++P+  T    + ACA  A L   R+I
Sbjct: 325 VVSWTVMIEGYAENGNIEDAFGLFATM--QEEGIQPDRITYMHIMNACAISANLNHAREI 382

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H+ V    +   +  V+  L+ MY++ G I  AR VFD + +R+VVSW++++  Y  +G 
Sbjct: 383 HSQVDIAGFGTDL-LVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGY 441

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G +A   F  M++  + PDGVT++ LL AC H G +D G++ +    K   +S      A
Sbjct: 442 GTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNA 501

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
            I+ +  +   ++ A  + + M +    I W A++ G  +H N        +R+L+
Sbjct: 502 LII-MNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLK 555


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 289/741 (39%), Positives = 428/741 (57%), Gaps = 29/741 (3%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S   VF WN L+    +    D A  L+ +M+     P+ YTFP VLK C  +     G 
Sbjct: 159 SERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGK 218

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +HA +   GF+S+V V NAL+ MY +C  +S AR LFD+M +    D +SWN +++ Y 
Sbjct: 219 EIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKR---DRISWNAMISGYF 275

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           ++G    GL LF+ M  ++ V  D +++    SAC  L     G+          V +  
Sbjct: 276 ENGGGLEGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGV-----HGYVVKSE 329

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              D+   N+++  YS +G  E+A  +F +M  ++V    V+W+A+IA         +A+
Sbjct: 330 FGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV----VSWTAMIASLVSHKLPFKAV 385

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           + ++ M+  G+ P+ +TLVS+LS CA +G L LG   H   IK  L    SH   ++V N
Sbjct: 386 ETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV---SH---VIVSN 439

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +LIDMY+KCK VD A  +F  I+ KN  V +WT +I     N  + +AL  F QM +   
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKN--VVSWTSLILGLRINNRSFEALLFFRQMKES-- 495

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            +KPN+ TL   L ACAR+ AL  G++IHA+ LR        F+ N ++DMY R G    
Sbjct: 496 -MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVG-FDGFLPNAILDMYVRCGRKVP 553

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A   F N ++++V +W  L+TGY   G    A   FD+M +  + PD +TF+ LL ACS 
Sbjct: 554 ALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSK 612

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           SGMV +GL+YF+ M  ++ ++   +HYAC+VD+LGRA +LD+A + I+ MP+ P   IW 
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWG 672

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALLN CRIH NVELGE+AA R+ E +++  G Y LL N+YA  G W  V+++RSLM+  G
Sbjct: 673 ALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERG 732

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +   PGCSWV+ K     F  GD +H QS++I  +L G   ++K  G+    S    +++
Sbjct: 733 LSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIE 792

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
              + D+   HSE+ A+A+G++ TAPG PI +TKNL +C  CH+ + FIS I+  EI +R
Sbjct: 793 S-SRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVR 851

Query: 816 DSNRFHHFKEGSCTC--KGYW 834
           D   +HHFK+G C+C  +GYW
Sbjct: 852 DVEEYHHFKDGVCSCGDEGYW 872



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 219/409 (53%), Gaps = 26/409 (6%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+++ + R G+  DA+ +F KM + +V     +W+ ++ GYA+ G   EAL+++ +M +
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDV----FSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             + PNV T  S+L  CA V  +  GKE H + I+           D+ V NALI MY K
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRF------GFESDVDVGNALITMYVK 245

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +  AR++FD + PK RD  +W  MI  Y +NGG  + L LF  M  ++  V P+  T
Sbjct: 246 CGDISNARMLFDKM-PK-RDRISWNAMISGYFENGGGLEGLELFSMM--RELSVDPDLIT 301

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++    AC  L   R GR +H YV+++++   I  + N LI MYS  G ++ A  VF  +
Sbjct: 302 MTTVASACELLDNERLGRGVHGYVVKSEFGGDIS-MNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           + ++VVSWT+++     H L  KA   +  M  EG+ PD +T + +L AC+  G +D G+
Sbjct: 361 ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +  + ++ + G+ +       ++D+  +   +D A+E+   +  +   + W +L+ G RI
Sbjct: 421 RLHE-IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV-VSWTSLILGLRI 478

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           + N     L   R ++ ES K  S TL+S + A        ARI +LM+
Sbjct: 479 N-NRSFEALLFFRQMK-ESMKPNSVTLISVLSA-------CARIGALMR 518



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N L+ M+ R G++  A  VF  + +R+V SW  L+ GY   G  D+A   + +M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + P+  TF  +L  C+    + +G K   +    FG  +  +    ++ +  +   +  A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARG-KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNA 252

Query: 619 VELIEGMPMEPTPIIWVALLNG 640
             L + MP +   I W A+++G
Sbjct: 253 RMLFDKMP-KRDRISWNAMISG 273


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/762 (38%), Positives = 442/762 (58%), Gaps = 26/762 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  YV +++   A  L   + P   +V +   +   +  LR  + A  LF ++   G  
Sbjct: 85  LLNFYVKYDSLPDAAKLFDEM-PDRNTVSFVTLIQGYSQCLRFSE-AIGLFSRLQGEGHE 142

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            + + F  VLK       ++ G SVHA +   GFDS+ FV  AL+  Y+ C     ARQ+
Sbjct: 143 LNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQV 202

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD +      D+VSW  +VA Y ++   E  L LF+RM   V  + +  +  + L AC  
Sbjct: 203 FDAIEYK---DMVSWTGMVACYVENECFEESLKLFSRMR-IVGFKPNNFTFASVLKACVG 258

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L  ++ GK           F+   ++++     ++  Y + G  +DA  +F++M +++V 
Sbjct: 259 LEVFNVGKAVHGC-----AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDV- 312

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              + WS +IA YAQ     EA+++F +M+   + PN  TL SLL  CAS+  L LG + 
Sbjct: 313 ---IPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQI 369

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HC+ +K  L ++      + V NAL+DMYAKC  ++ +  +F   +P   DV +W  +I 
Sbjct: 370 HCHVVKVGLDMN------VFVSNALMDMYAKCGRMENSLQLFSE-SPNCTDV-SWNTVIV 421

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y Q G    AL LF  M +    V+    T S  L ACA +AAL  G QIH+  ++  Y
Sbjct: 422 GYVQAGNGEKALILFKDMLECQ--VQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIY 479

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +     V N LIDMY++ G+I  AR+VFD L++ + VSW ++++GY +HGL  +A   F+
Sbjct: 480 DK-NTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFE 538

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M +    PD VTF+ +L ACS++G++D+G  YF SM +E+ I   AEHY C+V LLGR+
Sbjct: 539 SMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRS 598

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             LD+A +L+  +P EP+ ++W ALL+ C IH +VELG ++A R+LE+E E + ++ LLS
Sbjct: 599 GHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLS 658

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIYANA RW +VA IR+ MK  G++K PG SW++ +     F VGD +HP ++ I  +L 
Sbjct: 659 NIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLE 718

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L  + +  GYVP  S  L DV+D +K   L+ HSE+LALAYG++ T   +P+RI KNLR
Sbjct: 719 WLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLR 778

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IC DCH+AI  IS I+  +II+RD NRFHHF EG C+C  YW
Sbjct: 779 ICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 22/287 (7%)

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           E N     SLL  C   G    GK  HC  IK+       +  DL   N L++ Y K  S
Sbjct: 41  EFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKK------GNCLDLFANNILLNFYVKYDS 94

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  A  +FD +   +R+  ++  +I  YSQ    ++A+ LF ++  +   + P  F+   
Sbjct: 95  LPDAAKLFDEMP--DRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVL 152

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L+  A  A L F   +HA V +  ++    FV   LID YS  G  + AR VFD ++ +
Sbjct: 153 KLLVSAEWAKLGFS--VHACVYKLGFDS-DAFVGTALIDCYSVCGYAECARQVFDAIEYK 209

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-----HSGMVDQ 581
           ++VSWT ++  Y  +   +++   F +MR  G  P+  TF  +L AC      + G    
Sbjct: 210 DMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVH 269

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           G  +  S  +E  +         ++DL  ++  +D+A+++ E MP +
Sbjct: 270 GCAFKTSYLEELFVGVE------LIDLYIKSGDVDDALQVFEEMPKD 310


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 309/895 (34%), Positives = 473/895 (52%), Gaps = 114/895 (12%)

Query: 37  IKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPS--PALSLLQ 91
           +K  S +LR+C   +SL     IH  +IV+++ + P SHL  + V+  A     A + L 
Sbjct: 112 LKYYSSMLRECASKRSLGVAKAIHG-LIVKDVIN-PDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
                   V  W ALI+  V     +++  LF +M   G  P+E+T    LKAC    + 
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G  +HA     G   ++FV +AL+ +YA+C  +  A ++F  M  P   D V+WN ++
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGM--PEQND-VTWNVLL 286

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------- 260
             YAQ GD  G L LF  M  ++ V+ +  +L   L  CA+     +G+           
Sbjct: 287 NGYAQRGDVTGVLKLFCSMM-ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY 345

Query: 261 ---------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                          +CG+  +A  VF+ +K  D+V W+A++T   + G  E++  LF  
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHL 405

Query: 306 MR------------------------QENVKLNVVTW-----------SAVIAGYAQRGH 330
           MR                        Q    ++   W           +A++  Y + G 
Sbjct: 406 MRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC 465

Query: 331 GHEALDVFRQM---------------QFCGLE----------------PNVVTLVSLLSG 359
            H+   ++  M                 CG+                 PN+ T +S+L  
Sbjct: 466 VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C+ +  +  G++ H + IK  L       D+  V  ALIDMYAKC  ++ A V F+ ++ 
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLD------DNNFVCTALIDMYAKCMYLEDADVAFNRLSV 579

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
             RD+ TWTV+I +Y+Q      AL  F QM Q+   VKPN FTL+  L  C+ LA+L  
Sbjct: 580 --RDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG--VKPNEFTLAGCLSGCSSLASLEG 635

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+Q+H+ V ++ +   + FV + L+DMY++ G ++ A  +F+ L +R+ ++W +++ GY 
Sbjct: 636 GQQLHSMVFKSGHVSDM-FVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
            +G G+KA  AF  M  EG++PDGVTF  +L ACSH G+V++G ++F+SM ++FGIS   
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           +H AC+VD+LGR  + DE  + I+ M +    +IW  +L   ++H N+ LGE AAN+L E
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           L+ E++ SY LLSNI+A  GRW DV R+RSLM   GVKK PGCSWV+      TF   D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
           +HPQ Q+I+  L  L + + ++ YVP+T + LH+V + EK + L  HSE+LAL + +++T
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +    IRI KNLRIC DCH  +  IS I N EI++RD  RFHHFK G+C+C  +W
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/807 (36%), Positives = 443/807 (54%), Gaps = 100/807 (12%)

Query: 84  SPALS--LLQRISPSPF-----SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           SP  S  L  RIS +P       V  +NA I    +L   +NA  L    M +    +  
Sbjct: 43  SPIFSSCLPIRISATPTRTIDRQVTDYNAKILHFCQLGNLENAMELVC--MCQKSELETK 100

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           T+  VL+ C    S   G  VH++I S+    +  +   L+++YA C  L   R++FD M
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 197 --------------------FQPGIC----------------------------DIVSWN 208
                               F+  IC                            D++SWN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEA 268
           ++++ Y  +G  E GL ++ +M   + +  D  ++++ L  CA+ GT S GK    +   
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMY-LGIDVDLATIISVLVGCANSGTLSLGKAVHSLA-I 278

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           K  FER     +   N ++  YS+ G  + A  +F+KM + NV    V+W+++IAGY + 
Sbjct: 279 KSTFERR----INFSNTLLDMYSKCGDLDGALRVFEKMGERNV----VSWTSMIAGYTRD 330

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G    A+ + +QM+  G++ +VV   S+L  CA  G+L  GK+ H Y IK       +  
Sbjct: 331 GRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY-IKA-----NNME 384

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            +L V NAL+DMY KC S+D A  +F  +  K  D+ +W  MIG                
Sbjct: 385 SNLFVCNALMDMYTKCGSMDGANSVFSTMVVK--DIISWNTMIGE--------------- 427

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
                   +KP++ T++C L ACA L+AL  G++IH Y+LRN Y      VAN L+D+Y 
Sbjct: 428 --------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSS-DRHVANALVDLYV 478

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G +  AR++FD +  +++VSWT +++GYGMHG G++A   F++MR  G+ PD V+F+ 
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFIS 538

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +LYACSHSG+++QG ++F  M  +F I  + EHYAC+VDLL R   L +A E IE +P+ 
Sbjct: 539 ILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIA 598

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           P   IW ALL GCRI+ ++EL E  A R+ ELE E  G Y LL+NIYA A +W++V R+R
Sbjct: 599 PDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMR 658

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDR-THPQSQKIYEILAGLVQRIKAMGYVPQT 747
             +   G++K PGCSW++ K     F  G+  +HP S+KI  +L  + +++K  GY P+T
Sbjct: 659 EKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKT 718

Query: 748 SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
            +AL + D+ +K   L  HSEKLA+A+G+L   P   +R+TKNLR+CGDCH    F+S  
Sbjct: 719 KYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKE 778

Query: 808 INHEIILRDSNRFHHFKEGSCTCKGYW 834
              EI+LRDSNRFHHFK G C+C+G+W
Sbjct: 779 TRREIVLRDSNRFHHFKNGYCSCRGFW 805


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/722 (39%), Positives = 411/722 (56%), Gaps = 36/722 (4%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A  + +  ++RG   D + +  VLK C +         VH  I  S  + N  V N L+ 
Sbjct: 12  AIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLH 71

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           +Y  C  L  AR +FD + +       SWN ++A Y +   AE  + LF  M  +  VQ 
Sbjct: 72  VYIECGRLQEARCVFDALVKKSG---ASWNAMIAGYVEHKHAEDAMRLFREMCHE-GVQP 127

Query: 239 DGVSLVNALSACASLGTWSRGKQC------GMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           +  + +  L ACASL     GK+       G +E            DV    A++  Y +
Sbjct: 128 NAGTYMIILKACASLSALKWGKEVHACIRHGGLES-----------DVRVGTALLRMYGK 176

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            GS  +A  +F  +   ++    ++W+ +I  YAQ G+G EA  +  QM+  G +PN +T
Sbjct: 177 CGSINEARRIFDNLMNHDI----ISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
            VS+L+ CAS GAL   K  H + +   L +D      + V  AL+ MYAK  S+D ARV
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELD------VRVGTALVQMYAKSGSIDDARV 286

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD +  K RDV +W VMIG+++++G  ++A  LF QM  Q +  KP+A      L ACA
Sbjct: 287 VFDRM--KVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM--QTEGCKPDAIMFLSILNACA 342

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
              AL + ++IH + L +  E+ +  V   L+ MYS+SG ID ARVVFD +K RNVVSW 
Sbjct: 343 SAGALEWVKKIHRHALDSGLEVDVR-VGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWN 401

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           ++++G   HGLG  A   F +M   G+ PD VTF+ +L ACSH+G+VD+G   + +M++ 
Sbjct: 402 AMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV 461

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
           +GI     H  C+VDLLGRA RL EA   I+ M ++P    W ALL  CR + NVELGEL
Sbjct: 462 YGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGEL 521

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
            A   L+L+ +   +Y LLSNIYA AG+W  V+ +R++M+  G++K PG SW++      
Sbjct: 522 VAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIH 581

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F V D +HP+ ++I E    ++++IKA GY+P T   L + + ++K   +  HSEKLA+
Sbjct: 582 DFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAI 641

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
            YG++ T PG PIR+ KNLR+C DCH A   IS +   EII+RD+NRFHHFK+G C+C  
Sbjct: 642 VYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGD 701

Query: 833 YW 834
           YW
Sbjct: 702 YW 703



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 255/528 (48%), Gaps = 94/528 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   V  +  ++A RLF +M   G  P+  T+  +LKAC  L + + G  VHA I 
Sbjct: 97  WNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIR 156

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +S+V V  AL+ MY +C +++ AR++FD +      DI+SW  ++ AYAQSG+ + 
Sbjct: 157 HGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNH---DIISWTVMIGAYAQSGNGKE 213

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGT--WSRG--------------------- 259
              L  +M  +   + + ++ V+ L+ACAS G   W +                      
Sbjct: 214 AYRLMLQMEQE-GFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALV 272

Query: 260 ---KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G +++A+ VF+RMKV+DVVSWN M+  ++  G   +A+ LF +M+ E       
Sbjct: 273 QMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE------- 325

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
                                       G +P+ +  +S+L+ CAS GAL   K+ H + 
Sbjct: 326 ----------------------------GCKPDAIMFLSILNACASAGALEWVKKIHRHA 357

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +   L V      D+ V  AL+ MY+K  S+D ARV+FD +  K R+V +W  MI   +Q
Sbjct: 358 LDSGLEV------DVRVGTALVHMYSKSGSIDDARVVFDRM--KVRNVVSWNAMISGLAQ 409

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G   DAL +F +M      VKP+  T    L AC+    +  GR    Y+   Q   + 
Sbjct: 410 HGLGQDALEVFRRMTAHG--VKPDRVTFVAVLSACSHAGLVDEGRS--QYLAMTQVYGIE 465

Query: 497 PFVA--NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG---YGMHGLGDKAHWA 550
           P V+  NC++D+  R+G +  A++  DN+    +  +W +L+     YG   LG      
Sbjct: 466 PDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELG------ 519

Query: 551 FDQMRKEGLAPD---GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            + + KE L  D     T+++L    + +G  D  + +  +M +E GI
Sbjct: 520 -ELVAKERLKLDPKNAATYVLLSNIYAEAGKWDM-VSWVRTMMRERGI 565



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNA+I    +  L  +A  +F +M   G  PD  TF  VL AC        G S +
Sbjct: 396 NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQY 455

Query: 159 -AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDIVSWNTIVAAYAQ 216
            A+    G + +V  CN ++ +  R   L  A+   D M   P   D  +W  ++ +   
Sbjct: 456 LAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDP---DEATWGALLGSCRT 512

Query: 217 SGDAE-GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
            G+ E G L+   R+  D K     V L N     A  G W 
Sbjct: 513 YGNVELGELVAKERLKLDPKNAATYVLLSNIY---AEAGKWD 551


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/832 (35%), Positives = 472/832 (56%), Gaps = 45/832 (5%)

Query: 19  LNHLFTNIKLFSVTTTPC-IKITSLLLRQC---KSLTQVYLIHQQIIVQ--NLTHVPPSH 72
           L+H F+ + L +    P  +   S+LL+ C   ++     L+H++++     L  V  + 
Sbjct: 7   LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 66

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI+ Y S    +    L+     +   +  W+A++       +   A   FL M+  G++
Sbjct: 67  LISLY-SKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYAR-CDTLSYAR 190
           P+EY F  V++AC     +  G  ++  +  +G+ +++V V   L+ M+ +    L  A 
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNAL 247
           ++FD+M +    ++V+W  ++  +AQ G A   + LF     D+++ G   D  +  + L
Sbjct: 186 KVFDKMPER---NLVTWTLMITRFAQLGCARDAIDLFL----DMELSGYVPDRFTYSSVL 238

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI---GSFEDAFALFK 304
           SAC  LG  + GKQ        +V       DV    ++V  Y++    GS +D+  +F+
Sbjct: 239 SACTELGLLALGKQL-----HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
           +M + NV    ++W+A+I  Y Q G    EA+++F +M    + PN  +  S+L  C ++
Sbjct: 294 QMPEHNV----MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 349

Query: 364 GALLLGKETHCYTIKR-VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
                G++ + Y +K  + SV+        V N+LI MYA+   ++ AR  FD +  KN 
Sbjct: 350 SDPYTGEQVYSYAVKLGIASVN-------CVGNSLISMYARSGRMEDARKAFDILFEKN- 401

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
            + ++  ++  Y++N  + +A  LF ++   D  +  +AFT +  L   A + A+  G Q
Sbjct: 402 -LVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGIGISAFTFASLLSGAASIGAMGKGEQ 458

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           IH  +L+  Y+     + N LI MYSR G+I+ A  VF+ ++ RNV+SWTS++TG+  HG
Sbjct: 459 IHGRLLKGGYKS-NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 517

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
              +A   F +M + G  P+ +T++ +L ACSH GM+ +G K+F+SM KE GI  R EHY
Sbjct: 518 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 577

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           AC+VDLLGR+  L EA+E I  MP+    ++W  LL  CR+H N ELG  AA  +LE E 
Sbjct: 578 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 637

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           +   +Y LLSN++A+AG+WKDV +IR  MK   + K  GCSW++ +     F VG+ +HP
Sbjct: 638 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 697

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           Q+ +IY+ L  L  +IK MGY+P T F LHD+++E+K   LF+HSEK+A+A+G+++T+  
Sbjct: 698 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 757

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PIRI KNLR+CGDCH+AI +ISM    EI++RDSNRFHH K G C+C  YW
Sbjct: 758 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/736 (38%), Positives = 436/736 (59%), Gaps = 30/736 (4%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGW--HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           N LI    R  LP  AF L   ++   +   PD +TFP +++A    PS+   + +HA  
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAA---PSNASAAQLHACA 93

Query: 162 CSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
              G    +VF   +L+  Y R   +S A ++FDEM +    D+ +WN +++   ++  A
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSER---DVPAWNAMLSGLCRNARA 150

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              + LF RM G+  V GD V++ + L  C  LG     +   ++     V   +  K++
Sbjct: 151 AEAVGLFGRMVGE-GVAGDTVTVSSVLPMCVLLGD----QVLALVMHVYAVKHGLD-KEL 204

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              NA++  Y ++G  E+A  +F  M   ++    VTW+++I+G  QRG    AL +F+ 
Sbjct: 205 FVCNALIDVYGKLGMLEEAQCVFHGMECRDL----VTWNSIISGCEQRGQTAAALKMFQG 260

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G+ P+V+TLVSL S  A  G     K  HCY ++R   VD     D++  NA++DM
Sbjct: 261 MRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVD-----DIIAGNAIVDM 315

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAK  +++ A+ MFD++  +  D  +W  +I  Y QNG AN+A+  +  M Q+ + +K  
Sbjct: 316 YAKLSNIEAAQRMFDSMPVQ--DSVSWNTLITGYMQNGLANEAVERYGHM-QKHEGLKAI 372

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T    L A + L AL+ G ++HA  ++    + + +V  CLID+Y++ G +  A ++F
Sbjct: 373 QGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDV-YVGTCLIDLYAKCGKLAEAMLLF 431

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           + + +R+   W ++++G G+HG G +A   F +M++EG+ PD VTF+ LL ACSH+G+VD
Sbjct: 432 EKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVD 491

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           QG  +FD M   + I   A+HYAC+ D+LGRA +LDEA   I+ MP++P   +W ALL  
Sbjct: 492 QGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGA 551

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH NVE+G++A+  L EL+ E  G Y L+SN+YA  G+W  V  +RSL++   ++K P
Sbjct: 552 CRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTP 611

Query: 701 GCSWVQGKEGTATFFVGDRT--HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
           G S ++ K     F+ G++T  HPQ ++I   L  L+ +I+++GYV   SF L DV+D+E
Sbjct: 612 GWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDE 671

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSE+LA+A+GI+ T   TP+ I KNLR+CGDCH+A  +IS I   EII+RDSN
Sbjct: 672 KEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSN 731

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  +W
Sbjct: 732 RFHHFKDGHCSCGDFW 747



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 146/505 (28%), Positives = 233/505 (46%), Gaps = 38/505 (7%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+ AY+     S A  +   +S     V  WNA++    R      A  LF +M+  G  
Sbjct: 109 LVHAYLRFGRISEAYKVFDEMSER--DVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVA 166

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D  T   VL  C  L        +H      G D  +FVCNAL+ +Y +   L  A+ +
Sbjct: 167 GDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCV 226

Query: 193 FDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           F  M     C D+V+WN+I++   Q G     L +F  M G   V  D ++LV+  SA A
Sbjct: 227 FHGME----CRDLVTWNSIISGCEQRGQTAAALKMFQGMRGS-GVSPDVLTLVSLASAIA 281

Query: 252 SLGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
             G     K   C +M           V D+++ NA+V  Y+++ + E A  +F  M  +
Sbjct: 282 QGGDGRSAKSLHCYVMRRG------WDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ 335

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGALLL 368
               + V+W+ +I GY Q G  +EA++ +  MQ   GL+    T VS+L   + +GAL  
Sbjct: 336 ----DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ 391

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G   H  +IK  L+V      D+ V   LID+YAKC  +  A ++F+ + P+ R    W 
Sbjct: 392 GMRMHALSIKIGLNV------DVYVGTCLIDLYAKCGKLAEAMLLFEKM-PR-RSTGPWN 443

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I     +G   +AL LF +M Q+   +KP+  T    L AC+    +  GR     V+
Sbjct: 444 AIISGLGVHGHGAEALTLFSRMQQEG--IKPDHVTFVSLLAACSHAGLVDQGRSFFD-VM 500

Query: 489 RNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGD 545
           +  Y+ ++P   +  C+ DM  R+G +D A     N+  + +   W +L+    +HG  +
Sbjct: 501 QVTYD-IVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVE 559

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLL 570
               A   + +  L P+ V + VL+
Sbjct: 560 MGKVASQNLFE--LDPENVGYYVLM 582


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/763 (35%), Positives = 416/763 (54%), Gaps = 61/763 (7%)

Query: 120  FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
              +F ++  +G   D   +   LK C  +     G  +H  +   GFD +V++  ALM  
Sbjct: 659  LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 718

Query: 180  YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
            Y RC  L  A Q+F EM  P   + + WN  +    QS   + G+ LF +M     ++ +
Sbjct: 719  YGRCWGLEKANQVFHEMPNP---EALLWNEAIILNLQSEKLQKGVELFRKMQFSF-LKAE 774

Query: 240  GVSLVNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFE 273
              ++V  L AC  +G  +  KQ                           G +E A++VF+
Sbjct: 775  TATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFD 834

Query: 274  RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             M+ ++  SWN+M++ Y+ +G   DA++LF ++   ++K ++VTW+ +++G+   G+  E
Sbjct: 835  SMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 894

Query: 334  ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
             L++ ++MQ  G +PN  ++ S+L   + +G L +GKETH Y ++     D      + V
Sbjct: 895  VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCD------VYV 948

Query: 394  INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
              +LIDMY K  S+  A+ +FD +  KNR++  W  ++  YS  G   DAL L  QM ++
Sbjct: 949  GTSLIDMYVKNHSLXSAQAVFDNM--KNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKE 1006

Query: 454  D----------------------KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
                                   K   PN+ +++C L ACA L+ L+ G++IH   +RN 
Sbjct: 1007 GIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNG 1066

Query: 492  YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            +   + FVA  LIDMYS+S  +  A  VF  ++ + + SW  ++ G+ + GLG +A   F
Sbjct: 1067 FIEDV-FVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVF 1125

Query: 552  DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            ++M+K G+ PD +TF  LL AC +SG++ +G KYFDSM  ++ I  R EHY C+VDLLGR
Sbjct: 1126 NEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGR 1185

Query: 612  ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
            A  LDEA +LI  MP++P   IW ALL  CRIH N+   E AA  L +LE     +Y L+
Sbjct: 1186 AGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILM 1245

Query: 672  SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
             N+Y+   RW+D+  +R LM   GV+ R   SW+Q  +    F   ++ HP + KIY  L
Sbjct: 1246 MNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFEL 1305

Query: 732  AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
              LV  +K +GYVP  +    ++D+ EK  +L  H+EKLA+ YG++    G PIR+ KN 
Sbjct: 1306 YQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNT 1365

Query: 792  RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            RIC DCHSA  +IS++   E+ LRD  RFHHF+EG C+C  +W
Sbjct: 1366 RICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 223/482 (46%), Gaps = 85/482 (17%)

Query: 95   PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
            P+P ++ W  A+I      +L      LF +M       +  T   VL+ACG++ +    
Sbjct: 736  PNPEALLWNEAIILNLQSEKL-QKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAA 794

Query: 155  SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC------------ 202
              +H  +   G DS+V +CN L++MY++   L  AR++FD M                  
Sbjct: 795  KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 854

Query: 203  --------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
                                DIV+WN +++ +   G  E  L +  RM G+   + +  S
Sbjct: 855  GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSS 913

Query: 243  LVNALSACASLGTWSRGKQ-----------CGM---------------MEEAKKVFERMK 276
            + + L A + LG  + GK+           C +               +  A+ VF+ MK
Sbjct: 914  MTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMK 973

Query: 277  VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             +++ +WN++V+GYS  G FEDA  L  +M +E +K ++VTW+ +I+GYA  G   +A  
Sbjct: 974  NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKA-- 1031

Query: 337  VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
                       PN  ++  LL  CAS+  L  GKE HC      LS+     +D+ V  A
Sbjct: 1032 ---------FMPNSASITCLLRACASLSLLQKGKEIHC------LSIRNGFIEDVFVATA 1076

Query: 397  LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
            LIDMY+K  S+  A  +F  I  +N+ +A+W  MI  ++  G   +A+++F +M  Q   
Sbjct: 1077 LIDMYSKSSSLKNAHKVFRRI--QNKTLASWNCMIMGFAIFGLGKEAISVFNEM--QKVG 1132

Query: 457  VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDID 514
            V P+A T +  L AC     +  G +    ++ +    ++P + +  C++D+  R+G +D
Sbjct: 1133 VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDY--RIVPRLEHYCCMVDLLGRAGYLD 1190

Query: 515  TA 516
             A
Sbjct: 1191 EA 1192


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/731 (38%), Positives = 433/731 (59%), Gaps = 27/731 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +F WN L+    +    D A  L+ +M+  G  PD YTFP VL+ CG LP    G  VH 
Sbjct: 160 LFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHL 219

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF+S+V V NAL+ MY +C  +  AR +FD M +    D +SWN +++ Y ++  
Sbjct: 220 HVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR---DRISWNAMISGYFENDV 276

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
              GL LF  M  +  V  D +++ + +SAC +LG    G+     E    V +   V +
Sbjct: 277 CLEGLRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGR-----EVHGYVIKTGFVAE 330

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   N+++  +S +G +++A  +F KM  +++    V+W+A+I+GY + G   +A++ + 
Sbjct: 331 VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL----VSWTAMISGYEKNGLPEKAVETYT 386

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+  G+ P+ +T+ S+LS CA +G L  G   H +  +  L+        ++V N+LID
Sbjct: 387 IMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT------SYVIVANSLID 440

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+KC+ +D A  +F  I   N++V +WT +I     N  + +AL  F QM      +KP
Sbjct: 441 MYSKCRCIDKALEVFHRIP--NKNVISWTSIILGLRLNYRSFEALFFFQQMILS---LKP 495

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N+ TL   L ACAR+ AL  G++IHA+ LR        F+ N L+DMY R G ++ A   
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLG-FDGFLPNALLDMYVRCGRMEPAWNQ 554

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F++  +++V SW  L+TGY   G G  A   F +M +  + PD +TF  LL ACS SGMV
Sbjct: 555 FNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMV 613

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
             GL+YF+SM  +F I+   +HYA +VDLLGRA RL++A E I+ MP++P P IW ALLN
Sbjct: 614 TDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLN 673

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CRI+ NVELGELAA  + E++++  G Y LL N+YA++G+W +VAR+R +M+   +   
Sbjct: 674 ACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVD 733

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PGCSWV+       F  GD  HPQ ++I  +L G  ++++A G +  +  +  D  D  K
Sbjct: 734 PGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATG-LSMSKDSRRDDIDASK 792

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
            ++   HSE+LA+A+G++ T PGTPI +TKNL +C +CH+ + FIS ++   I +RD+ +
Sbjct: 793 AEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQ 852

Query: 820 FHHFKEGSCTC 830
           FHHFK+G C+C
Sbjct: 853 FHHFKDGVCSC 863



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 227/439 (51%), Gaps = 27/439 (6%)

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG--MM 265
           N+++      GD E  L+    M  +++V  +  + +  L  C     W R    G  + 
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQ-ELQVSVEEETYIALLRLC----EWKRAASEGSRVH 117

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
               K   R+ V+     NA+++ + R G   +A+ +F KM + ++     +W+ ++ GY
Sbjct: 118 SYVSKTVTRLGVR---LGNALLSMFVRFGDLVEAWYVFGKMAERDL----FSWNVLVGGY 170

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           A+ G+  EAL+++ +M + G+ P+V T   +L  C  +  L  G+E H + I+       
Sbjct: 171 AKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY------ 224

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
               D+ V+NALI MY KC  +  AR++FD + P+ RD  +W  MI  Y +N    + L 
Sbjct: 225 GFESDVDVVNALITMYVKCGDIFSARLVFDRM-PR-RDRISWNAMISGYFENDVCLEGLR 282

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           LF  M  ++  V P+  T++  + AC  L   R GR++H YV++  +   +  V N LI 
Sbjct: 283 LFFMM--REFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVS-VNNSLIQ 339

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           M+S  G  D A +VF  ++ +++VSWT++++GY  +GL +KA   +  M  EG+ PD +T
Sbjct: 340 MHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
              +L AC+  G++D+G+      +   G+++       ++D+  +   +D+A+E+   +
Sbjct: 400 IASVLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI 458

Query: 626 PMEPTPIIWVALLNGCRIH 644
           P     I W +++ G R++
Sbjct: 459 P-NKNVISWTSIILGLRLN 476



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 242/485 (49%), Gaps = 26/485 (5%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +E T+  +L+ C    ++  GS VH+ +  +     V + NAL++M+ R   L  A  +F
Sbjct: 93  EEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVF 152

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
            +M +    D+ SWN +V  YA++G  +  L L+ RM   V ++ D  +    L  C  L
Sbjct: 153 GKMAER---DLFSWNVLVGGYAKAGYFDEALNLYHRMLW-VGIRPDVYTFPCVLRTCGGL 208

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
              +RG++   +   +  FE     DV   NA++T Y + G    A  +F +M +     
Sbjct: 209 PDLARGREV-HLHVIRYGFE----SDVDVVNALITMYVKCGDIFSARLVFDRMPRR---- 259

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + ++W+A+I+GY +     E L +F  M+   ++P+++T+ S++S C ++G   LG+E H
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y IK     + S      V N+LI M++     D A ++F  +  K  D+ +WT MI  
Sbjct: 320 GYVIKTGFVAEVS------VNNSLIQMHSSVGCWDEAEMVFSKMEFK--DLVSWTAMISG 371

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y +NG    A+  +  M  + + V P+  T++  L ACA L  L  G  +H +  R    
Sbjct: 372 YEKNGLPEKAVETYTIM--EHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT 429

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  VAN LIDMYS+   ID A  VF  +  +NV+SWTS++ G  ++    +A + F Q
Sbjct: 430 SYV-IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQ 488

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M    L P+ VT + +L AC+  G +  G K   + +   G+         ++D+  R  
Sbjct: 489 MIL-SLKPNSVTLVSVLSACARIGALSCG-KEIHAHALRTGLGFDGFLPNALLDMYVRCG 546

Query: 614 RLDEA 618
           R++ A
Sbjct: 547 RMEPA 551


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 288/741 (38%), Positives = 427/741 (57%), Gaps = 29/741 (3%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S   VF WN L+    +    D A  L+ +M+     P+ YTFP VLK C  +     G 
Sbjct: 159 SERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGK 218

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +HA +   GF+S+V V NAL+ MY +C  +S AR LFD+M +    D +SWN +++ Y 
Sbjct: 219 EIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKR---DRISWNAMISGYF 275

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           ++G    GL LF+ M  ++ V  D +++    SAC  L     G+          V +  
Sbjct: 276 ENGGGLEGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGV-----HGYVVKSE 329

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              D+   N+++  YS +G  E+A  +F +M  ++V    V+W+A+IA         +A+
Sbjct: 330 FGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV----VSWTAMIASLVSHKLPFKAV 385

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           + ++ M+  G+ P+ +TLVS+LS CA +G L LG   H   IK  L    SH   ++V N
Sbjct: 386 ETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV---SH---VIVSN 439

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +LIDMY+KCK VD A  +F  I+ KN  V +WT +I     N  + +AL  F QM +   
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKN--VVSWTSLILGLRINNRSFEALLFFRQMKES-- 495

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            +KPN+ TL   L ACAR+ AL  G++IHA+ LR        F+ N ++DMY R G    
Sbjct: 496 -MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVG-FDGFLPNAILDMYVRCGRKVP 553

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A   F N ++++V +W  L+TGY   G    A   FD+M +  + PD +TF+ LL ACS 
Sbjct: 554 ALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSK 612

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           SGMV +GL+YF+ M  ++ ++   +HYAC+VD+LGRA +LD+A + I+ MP+ P   IW 
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWG 672

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALLN CRIH NVELGE+AA R+ E +++  G Y LL N+YA  G W  V+++RSLM+  G
Sbjct: 673 ALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERG 732

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +   PGCSWV+ K     F  GD +H QS++I  +L G   ++K  G+    S    +++
Sbjct: 733 LSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIE 792

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
              + D+   HSE+ A+A+G++ TAPG PI + KNL +C  CH+ + FIS I+  EI +R
Sbjct: 793 S-SRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVR 851

Query: 816 DSNRFHHFKEGSCTC--KGYW 834
           D   +HHFK+G C+C  +GYW
Sbjct: 852 DVEEYHHFKDGVCSCGDEGYW 872



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 219/409 (53%), Gaps = 26/409 (6%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+++ + R G+  DA+ +F KM + +V     +W+ ++ GYA+ G   EAL+++ +M +
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDV----FSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             + PNV T  S+L  CA V  +  GKE H + I+           D+ V NALI MY K
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRF------GFESDVDVGNALITMYVK 245

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +  AR++FD + PK RD  +W  MI  Y +NGG  + L LF  M  ++  V P+  T
Sbjct: 246 CGDISNARMLFDKM-PK-RDRISWNAMISGYFENGGGLEGLELFSMM--RELSVDPDLIT 301

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++    AC  L   R GR +H YV+++++   I  + N LI MYS  G ++ A  VF  +
Sbjct: 302 MTTVASACELLDNERLGRGVHGYVVKSEFGGDIS-MNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           + ++VVSWT+++     H L  KA   +  M  EG+ PD +T + +L AC+  G +D G+
Sbjct: 361 ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +  + ++ + G+ +       ++D+  +   +D A+E+   +  +   + W +L+ G RI
Sbjct: 421 RLHE-IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV-VSWTSLILGLRI 478

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           + N     L   R ++ ES K  S TL+S + A        ARI +LM+
Sbjct: 479 N-NRSFEALLFFRQMK-ESMKPNSVTLISVLSA-------CARIGALMR 518



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N L+ M+ R G++  A  VF  + +R+V SW  L+ GY   G  D+A   + +M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + P+  TF  +L  C+    + +G K   +    FG  +  +    ++ +  +   +  A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARG-KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNA 252

Query: 619 VELIEGMPMEPTPIIWVALLNG 640
             L + MP +   I W A+++G
Sbjct: 253 RMLFDKMP-KRDRISWNAMISG 273


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/797 (36%), Positives = 439/797 (55%), Gaps = 98/797 (12%)

Query: 92  RISPSP-----FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146
           RIS +P       V  +NA I    +L   +NA  L    M +    +  T+  VL+ C 
Sbjct: 53  RISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELIC--MCKKSELETKTYSSVLQLCA 110

Query: 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM---------- 196
            L S   G  VH++I S+    +  +   L++ YA C  L   R++FD M          
Sbjct: 111 GLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNF 170

Query: 197 ----------FQPGIC----------------------------DIVSWNTIVAAYAQSG 218
                     F+  IC                            D++SWN++++ Y  +G
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNG 230

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             E GL ++ +M   + +  D  ++++ L  CA+ GT S GK    +   K  FER    
Sbjct: 231 LTERGLGIYKQMMY-LGIDVDLATIISVLVGCANSGTLSLGKAVHSLA-IKSSFERR--- 285

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            +   N ++  YS+ G  + A  +F+KM + NV    V+W+++IAGY + G    A+ + 
Sbjct: 286 -INFSNTLLDMYSKCGDLDGALRVFEKMGERNV----VSWTSMIAGYTRDGRSDGAIKLL 340

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +QM+  G++ +VV + S+L  CA  G+L  GK+ H Y IK       +   +L V NAL+
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKA-----NNMESNLFVCNALM 394

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC S++ A  +F  +  K  D+ +W  MIG                        +K
Sbjct: 395 DMYAKCGSMEAANSVFSTMVVK--DIISWNTMIGE-----------------------LK 429

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P++ T++C L ACA L+AL  G++IH Y+LRN Y      VAN L+D+Y + G +  AR+
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSS-DRHVANALVDLYVKCGVLGLARL 488

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD +  +++VSWT ++ GYGMHG G++A   F++MR  G+ PD V+F+ +LYACSHSG+
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++QG ++F  M  +F I  + EHYAC+VDLL R   L +A E IE +P+ P   IW ALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALL 608

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
            GCR + ++EL E  A R+ ELE E  G Y LL+NIYA A +W++V R+R  +   G++K
Sbjct: 609 CGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRK 668

Query: 699 RPGCSWVQGKEGTATFFVGDR-THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            PGCSW++ K     F  G+  +HP S+ I  +L  + +++K  G+ P+T +AL + D+ 
Sbjct: 669 NPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEM 728

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K   L  HSEKLA+A+G+LT  P   IR+TKNLR+CGDCH    F+S     EI+LRD 
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDP 788

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHFK+G C+C+G+W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 293/832 (35%), Positives = 472/832 (56%), Gaps = 45/832 (5%)

Query: 19  LNHLFTNIKLFSVTTTPC-IKITSLLLRQC---KSLTQVYLIHQQIIVQ--NLTHVPPSH 72
           L+H F+ + L +    P  +   S+LL+ C   ++     L+H++++     L  V  + 
Sbjct: 25  LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 84

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI+ Y S    +    L+     +   +  W+A++       +   A   FL M+  G++
Sbjct: 85  LISLY-SKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYAR-CDTLSYAR 190
           P+EY F  V++AC     +  G  ++  +  +G+ +++V V   L+ M+ +    L  A 
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 203

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNAL 247
           ++FD+M +    ++V+W  ++  +AQ G A   + LF     D+++ G   D  +  + L
Sbjct: 204 KVFDKMPER---NLVTWTLMITRFAQLGCARDAIDLFL----DMELSGYVPDRFTYSSVL 256

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI---GSFEDAFALFK 304
           SAC  LG  + GKQ        +V       DV    ++V  Y++    GS +D+  +F+
Sbjct: 257 SACTELGLLALGKQL-----HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
           +M + NV    ++W+A+I  Y Q G    EA+++F +M    + PN  +  S+L  C ++
Sbjct: 312 QMPEHNV----MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 367

Query: 364 GALLLGKETHCYTIKR-VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
                G++ + Y +K  + SV+        V N+LI MYA+   ++ AR  FD +  KN 
Sbjct: 368 SDPYTGEQVYSYAVKLGIASVN-------CVGNSLISMYARSGRMEDARKAFDILFEKN- 419

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
            + ++  ++  Y++N  + +A  LF ++   D  +  +AFT +  L   A + A+  G Q
Sbjct: 420 -LVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGIGISAFTFASLLSGAASIGAMGKGEQ 476

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           IH  +L+  Y+     + N LI MYSR G+I+ A  VF+ ++ RNV+SWTS++TG+  HG
Sbjct: 477 IHGRLLKGGYKS-NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 535

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
              +A   F +M + G  P+ +T++ +L ACSH GM+ +G K+F+SM KE GI  R EHY
Sbjct: 536 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 595

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           AC+VDLLGR+  L EA+E I  MP+    ++W  LL  CR+H N ELG  AA  +LE E 
Sbjct: 596 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 655

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           +   +Y LLSN++A+AG+WKDV +IR  MK   + K  GCSW++ +     F VG+ +HP
Sbjct: 656 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 715

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           Q+ +IY+ L  L  +IK MGY+P T F LHD+++E+K   LF+HSEK+A+A+G+++T+  
Sbjct: 716 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 775

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PIRI KNLR+CGDCH+AI +ISM    EI++RDSNRFHH K G C+C  YW
Sbjct: 776 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/741 (36%), Positives = 441/741 (59%), Gaps = 36/741 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ALI           A   F  M+  G++P+EY F  V +AC    +   G  +   + 
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 163 SSG-FDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
            +G F+S+V V  AL+ M+ + +  L  A ++FD M      ++V+W  ++  + Q G +
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDR---NVVTWTLMITRFQQLGFS 126

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVK 278
              + LF  M     V  D  +L   +SACA +G  S G+Q  C +M+    +       
Sbjct: 127 RDAVDLFLDMVLSGYVP-DRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDL------- 178

Query: 279 DVVSWNAMVTGYSRI---GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEA 334
           DV    ++V  Y++    GS +DA  +F +M   NV    ++W+A+I GY Q G    EA
Sbjct: 179 DVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV----MSWTAIITGYVQSGGCDREA 234

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-RVLSVDGSHPDDLMV 393
           +++F +M    ++PN  T  S+L  CA++  + LG++ +   +K R+ S++        V
Sbjct: 235 IELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASIN-------CV 287

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            N+LI MY++C +++ AR  FD +  KN  + ++  ++ +Y+++  + +A  LF ++  +
Sbjct: 288 GNSLISMYSRCGNMENARKAFDVLFEKN--LVSYNTIVNAYAKSLNSEEAFELFNEI--E 343

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
                 NAFT +  L   + + A+  G QIH+ +L++ ++  +  + N LI MYSR G+I
Sbjct: 344 GAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLH-ICNALISMYSRCGNI 402

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           + A  VF+ +   NV+SWTS++TG+  HG   +A   F +M + G++P+ VT++ +L AC
Sbjct: 403 EAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSAC 462

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH G++ +GLK+F SM  E GI  R EHYAC+VDLLGR+  L+EA+EL+  MP +   ++
Sbjct: 463 SHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALV 522

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
               L  CR+H N++LG+ AA  +LE +     +Y LLSN++A+AG+W++VA IR  MK 
Sbjct: 523 LRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKE 582

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             + K  GCSW++ +     F+VGD +HPQ+Q+IY+ L  L  +IK +GY+P T F LHD
Sbjct: 583 RNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHD 642

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           V++E+K   LF+HSEK+A+AYG ++T+   PIR+ KNLR+CGDCH+A  + S++   EI+
Sbjct: 643 VEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIV 702

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRD+NRFHHFK+G+C+C  YW
Sbjct: 703 LRDANRFHHFKDGTCSCNDYW 723



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 218/448 (48%), Gaps = 27/448 (6%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+VSW+ +++ YA +  A   +  F  M  +     +         AC++    S GK  
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDML-ECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVKLNVVTWSAV 321
                    FE     DV    A++  + +  G  E A+ +F +M   N    VVTW+ +
Sbjct: 65  FGFLLKTGYFE----SDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRN----VVTWTLM 116

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           I  + Q G   +A+D+F  M   G  P+  TL  ++S CA +G L LG++ HC  +K  L
Sbjct: 117 ITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGL 176

Query: 382 SVDGSHPDDLMVINALIDMYAKC---KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            +      D+ V  +L+DMYAKC    SVD AR +FD +   N  V +WT +I  Y Q+G
Sbjct: 177 DL------DVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHN--VMSWTAIITGYVQSG 228

Query: 439 GAN-DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G + +A+ LF +M Q    VKPN FT S  L ACA L+ +  G Q++A V++ +    I 
Sbjct: 229 GCDREAIELFLEMVQGQ--VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLAS-IN 285

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            V N LI MYSR G+++ AR  FD L ++N+VS+ +++  Y      ++A   F+++   
Sbjct: 286 CVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGA 345

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G   +  TF  LL   S  G + +G +    + K  G  +       ++ +  R   ++ 
Sbjct: 346 GTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNIEA 404

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHA 645
           A ++   M  +   I W +++ G   H 
Sbjct: 405 AFQVFNEMG-DGNVISWTSMITGFAKHG 431



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 230/452 (50%), Gaps = 36/452 (7%)

Query: 73  LIAAYVSHNAP-SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           LI  +V  N     A  +  R+     +V  W  +I R  +L    +A  LFL M+  G+
Sbjct: 84  LIDMFVKGNGDLESAYKVFDRMPDR--NVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGY 141

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC---DTLSY 188
            PD +T   V+ AC E+     G   H ++  SG D +V V  +L+ MYA+C    ++  
Sbjct: 142 VPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDD 201

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSG--DAEGGLMLFARMTGDVKVQGDGVSLVNA 246
           AR++FD M  P + +++SW  I+  Y QSG  D E   +    + G VK   +  +  + 
Sbjct: 202 ARKVFDRM--P-VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK--PNHFTFSSV 256

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L ACA+L     G+Q      A  V  R+   + V  N++++ YSR G+ E+A   F  +
Sbjct: 257 LKACANLSDIWLGEQV----YALVVKMRLASINCVG-NSLISMYSRCGNMENARKAFDVL 311

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            ++    N+V+++ ++  YA+  +  EA ++F +++  G   N  T  SLLSG +S+GA+
Sbjct: 312 FEK----NLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAI 367

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G++ H   +K           +L + NALI MY++C +++ A  +F+ +   N  V +
Sbjct: 368 GKGEQIHSRILK------SGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGN--VIS 419

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT MI  ++++G A  AL  F +M +    V PN  T    L AC+ +  +  G + H  
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAG--VSPNEVTYIAVLSACSHVGLISEGLK-HFK 476

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
            ++ ++  ++P + +  C++D+  RSG ++ A
Sbjct: 477 SMKVEHG-IVPRMEHYACVVDLLGRSGHLEEA 507



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 181/391 (46%), Gaps = 58/391 (14%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K ++V+WSA+I+ YA      EA+  F  M  CG  PN      +   C++   + LGK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK-SVDVARVMFDAIAPKNRDVATWTVM 430
              + +K      G    D+ V  ALIDM+ K    ++ A  +FD +   +R+V TWT+M
Sbjct: 64  IFGFLLKT-----GYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP--DRNVVTWTLM 116

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  + Q G + DA+ LF  M     +  P+ FTLS  + ACA +  L  GRQ H  V+++
Sbjct: 117 ITRFQQLGFSRDAVDLFLDMVLSGYV--PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKS 174

Query: 491 QYEMLIPFVANCLIDMYSR---SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK- 546
             ++ +  V   L+DMY++    G +D AR VFD +   NV+SWT+++TGY   G  D+ 
Sbjct: 175 GLDLDVC-VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDRE 233

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYAC--------------------------------- 573
           A   F +M +  + P+  TF  +L AC                                 
Sbjct: 234 AIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLIS 293

Query: 574 --SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL---IEGMPME 628
             S  G ++   K FD + ++  +S     Y  IV+   ++   +EA EL   IEG    
Sbjct: 294 MYSRCGNMENARKAFDVLFEKNLVS-----YNTIVNAYAKSLNSEEAFELFNEIEGAGTG 348

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLE 659
                + +LL+G      +  GE   +R+L+
Sbjct: 349 VNAFTFASLLSGASSIGAIGKGEQIHSRILK 379


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/736 (37%), Positives = 406/736 (55%), Gaps = 72/736 (9%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA I  +G  ++  +   L++ YA     + A  + D + +P   ++ S++T++ A+++ 
Sbjct: 36  HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEP---NVFSFSTLIYAFSKF 92

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
                 L  F++M     +  D   L +A+ ACA L      +Q                
Sbjct: 93  HQFHHALSTFSQMLTR-GLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFV 151

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                     C  + +A +VF+RM   DVVSW+A+V  Y+R G  ++A  LF +M    V
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGV 211

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           + N+++W+ +IAG+   G   EA+ +F  M   G EP+  T+ S+L     +  L++G  
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------- 421
            H Y IK+ L  D        V +ALIDMY KC        +FD +   +          
Sbjct: 272 IHGYVIKQGLVSDKC------VSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFG 325

Query: 422 -----------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
                                   +V +WT MI   SQNG   +AL LF +M  Q   VK
Sbjct: 326 LSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM--QIAGVK 383

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN+ T+ C L AC  +AAL  G+  H + LR      + +V + LIDMY++ G I  +R+
Sbjct: 384 PNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDV-YVGSALIDMYAKCGRIQASRI 442

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            FD +  +N+V W +++ GY MHG   +A   FD M++ G  PD ++F  +L ACS SG+
Sbjct: 443 CFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGL 502

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            ++G  YF+SMS ++GI AR EHYAC+V LL RA +L++A  +I  MP+ P   +W ALL
Sbjct: 503 TEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           + CR+H NV LGE+AA +L ELE    G+Y LLSNIYA+ G W +V R+R +MK+ G++K
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PGCSW++ K        GD++HPQ  +I E L  L   +K +GY P+ +F L DV++++
Sbjct: 623 NPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQD 682

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSEKLA+ +G+L T PG P+++ KNLRICGDCH  I FIS     EI +RD+N
Sbjct: 683 KEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTN 742

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFKEG+C+C  YW
Sbjct: 743 RFHHFKEGACSCGDYW 758



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 258/564 (45%), Gaps = 94/564 (16%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPAL---SLLQRISPSPFSVFWWNA 105
           SL+Q    H  I+   L +   +HL    +SH A +      +L+  + P P +VF ++ 
Sbjct: 28  SLSQTRQAHAHILKTGLFN--DTHLATKLLSHYANNMCFADATLVLDLVPEP-NVFSFST 84

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           LI    +     +A   F QM+ RG  PD    P  +KAC  L + +    VH +   SG
Sbjct: 85  LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           FDS+ FV ++L+ MY +C+ +  A ++FD MF+P   D+VSW+ +VAAYA+ G  +    
Sbjct: 145 FDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP---DVVSWSALVAAYARQGCVDEAKR 201

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWS-----------RGKQ------------C 262
           LF+ M GD  VQ + +S    ++     G +S           RG +             
Sbjct: 202 LFSEM-GDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 263 GMMEEA-------KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
           G +E+          V ++  V D    +A++  Y +     +   +F +M      ++V
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDH----MDV 316

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQ----------------------------------- 340
            + +A I G ++ G    +L +FRQ                                   
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFRE 376

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           MQ  G++PN VT+  LL  C ++ AL+ GK  HC++++R +S       D+ V +ALIDM
Sbjct: 377 MQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIST------DVYVGSALIDM 430

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC  +  +R+ FD I  KN  +  W  +I  Y+ +G A +A+ +F  M  Q    KP+
Sbjct: 431 YAKCGRIQASRICFDGIPTKN--LVCWNAVIAGYAMHGKAKEAMEIFDLM--QRSGQKPD 486

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQY--EMLIPFVANCLIDMYSRSGDIDTARV 518
             + +C L AC++      G   +   + ++Y  E  +   A C++ + SR+G ++ A  
Sbjct: 487 IISFTCVLSACSQSGLTEEG-SYYFNSMSSKYGIEARVEHYA-CMVTLLSRAGKLEQAYA 544

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMH 541
           +   +    +   W +L++   +H
Sbjct: 545 MIRRMPVNPDACVWGALLSSCRVH 568


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/735 (37%), Positives = 422/735 (57%), Gaps = 30/735 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N+LI    +    D A +LF +M      PD  T   +L AC  + +   G  +H+ + 
Sbjct: 282 YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI 341

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G  S++ +  +L+ +Y +C  +  A + F         ++V WN ++ AY Q G+   
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYF---LTTETENVVLWNVMLVAYGQLGNLSE 398

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
              +F +M    +++G   +  +  + L  C SLG    G+Q        +V +     +
Sbjct: 399 SYWIFLQM----QIEGLMPNQYTYPSILRTCTSLGALDLGEQI-----HTQVIKSGFQFN 449

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   + ++  Y++ G  + A  + +++R+E+V    V+W+A+IAGY Q     EAL +F+
Sbjct: 450 VYVCSVLIDMYAKHGELDTARGILQRLREEDV----VSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M+  G+  + +   S +S CA + AL  G++ H        S    + +DL + NAL+ 
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ------SYISGYSEDLSIGNALVS 559

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YA+C     A + F+ I  K  D  +W  +I  ++Q+G   +AL +F QM Q    V+ 
Sbjct: 560 LYARCGRAQDAYLAFEKIDAK--DNISWNALISGFAQSGHCEEALQVFSQMNQAG--VEA 615

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N FT   A+ A A  A ++ G+QIHA +++  Y+      +N LI +YS+ G I+ A+  
Sbjct: 616 NLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETE-ASNVLITLYSKCGSIEDAKRE 674

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  + ++NVVSW +++TGY  HG G +A   F++M++ GL P+ VTF+ +L ACSH G+V
Sbjct: 675 FFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLV 734

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           ++GL YF SMSKE G+  + EHY C+VDLLGRA  L  A E IE MP+EP  +IW  LL+
Sbjct: 735 NEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLS 794

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            C +H N+E+GE AA  LLELE E   +Y LLSN+YA +G+W    R R +MK  GVKK 
Sbjct: 795 ACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKE 854

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG SW++ K     FFVGDR HP +++IYE +  L +R   +GYV      L+DV+ E+K
Sbjct: 855 PGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQK 914

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
               + HSEKLA+A+G+L+     PIR+ KNLR+C DCH+ I F+S I N  I++RD+ R
Sbjct: 915 DPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYR 974

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF+ G C+CK YW
Sbjct: 975 FHHFEGGVCSCKDYW 989



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 297/580 (51%), Gaps = 41/580 (7%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  S LI  Y++H     A+ L   I  S  +V +WN +I   +  +L      LF  M+
Sbjct: 46  VLGSRLIDIYLAHGEVDNAIKLFDDIPSS--NVSFWNKVISGLLAKKLASQVLGLFSLMI 103

Query: 128 RRGWHPDEYTFPFVLKAC--GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
                PDE TF  VL+AC  G+ P  +    +HA I   GF S+  VCN L+ +Y++   
Sbjct: 104 TENVTPDESTFASVLRACSGGKAPF-QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGH 162

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  A+ +F+ +F   + D VSW  +++  +Q+G  +  ++LF +M     +    V   +
Sbjct: 163 VDLAKLVFERLF---LKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV-FSS 218

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            LSAC  +  +  G+Q         + +     +    NA+VT YSR G+   A  +F K
Sbjct: 219 VLSACTKIELFKLGEQLHGF-----IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSK 273

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +     ++++++I+G AQRG    AL +F +MQ   ++P+ VT+ SLLS CASVGA
Sbjct: 274 MHRRDR----ISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
              GK+ H Y IK  +S       DL++  +L+D+Y KC  ++ A   F  +  +  +V 
Sbjct: 330 GYKGKQLHSYVIKMGMS------SDLIIEGSLLDLYVKCFDIETAHEYF--LTTETENVV 381

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W VM+ +Y Q G  +++  +F QM  Q + + PN +T    L  C  L AL  G QIH 
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQM--QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHT 439

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            V+++ ++  + +V + LIDMY++ G++DTAR +   L++ +VVSWT+++ GY  H L  
Sbjct: 440 QVIKSGFQFNV-YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFA 498

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK-----YFDSMSKEFGISARAE 600
           +A   F +M  +G+  D + F   + AC+    ++QG +     Y    S++  I     
Sbjct: 499 EALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG---- 554

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
               +V L  R  R  +A    E +  +   I W AL++G
Sbjct: 555 --NALVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISG 591



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 227/506 (44%), Gaps = 81/506 (16%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN ++    +L     ++ +FLQM   G  P++YT+P +L+ C  L +   G  +H
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  SGF  NV+VC+ L+ MYA+   L  AR +   + +    D+VSW  ++A Y Q  
Sbjct: 439 TQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE---DVVSWTAMIAGYTQHD 495

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                L LF  M     ++ D +   +A+SACA +   ++G+Q                 
Sbjct: 496 LFAEALKLFQEMENQ-GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG 554

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG  ++A   FE++  KD +SWNA+++G+++ G  E+A  +F +M Q  V 
Sbjct: 555 NALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGV- 613

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                             E N+ T  S +S  A+   +  GK+ 
Sbjct: 614 ----------------------------------EANLFTFGSAVSATANTANIKQGKQI 639

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H   IK        +  +    N LI +Y+KC S++ A+  F  +  KN  V +W  MI 
Sbjct: 640 HAMMIKT------GYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKN--VVSWNAMIT 691

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            YSQ+G  ++A++LF +M Q   +  PN  T    L AC+ +  +  G      + +   
Sbjct: 692 GYSQHGYGSEAVSLFEEMKQLGLM--PNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHG 749

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            +  P    C++D+  R+  +  AR   + +  + + + W +L++   +H   +   +A 
Sbjct: 750 LVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAA 809

Query: 552 DQMRKEGLAP-DGVTFLVL--LYACS 574
             + +  L P D  T+++L  +YA S
Sbjct: 810 RHLLE--LEPEDSATYVLLSNMYAVS 833


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 290/797 (36%), Positives = 439/797 (55%), Gaps = 98/797 (12%)

Query: 92  RISPSP-----FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146
           RIS +P       V  +NA I    +L   +NA  L     +     +  T+  VL+ C 
Sbjct: 53  RISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKS--ELETKTYGSVLQLCA 110

Query: 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM---------- 196
            L S   G  VH++I S+    +  +   L++ YA C  L   R++FD M          
Sbjct: 111 GLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNF 170

Query: 197 ----------FQPGIC----------------------------DIVSWNTIVAAYAQSG 218
                     F+  IC                            D++SWN++++ Y  +G
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNG 230

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             E GL ++ +M   + +  D  ++++ L  CA+ GT S GK    +   K  FER    
Sbjct: 231 LTERGLGIYKQMMY-LGIDVDLATIISVLVGCANSGTLSLGKAVHSLA-IKSSFERR--- 285

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            +   N ++  YS+ G  + A  +F+KM + NV    V+W+++IAGY + G    A+ + 
Sbjct: 286 -INFSNTLLDMYSKCGDLDGALRVFEKMGERNV----VSWTSMIAGYTRDGRSDGAIKLL 340

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +QM+  G++ +VV + S+L  CA  G+L  GK+ H Y IK       +   +L V NAL+
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKA-----NNMESNLFVCNALM 394

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC S++ A  +F  +  K  D+ +W  MIG                        +K
Sbjct: 395 DMYAKCGSMEAANSVFSTMVVK--DIISWNTMIGE-----------------------LK 429

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P++ T++C L ACA L+AL  G++IH Y+LRN Y      VAN L+D+Y + G +  AR+
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSS-DRHVANALVDLYVKCGVLGLARL 488

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD +  +++VSWT ++ GYGMHG G++A   F++MR  G+ PD V+F+ +LYACSHSG+
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++QG ++F  M  +F I  + EHYAC+VDLL R   L +A E +E +P+ P   IW ALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALL 608

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
            GCR + ++EL E  A R+ ELE E  G Y LL+NIYA A +W++V R+R  +   G++K
Sbjct: 609 CGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRK 668

Query: 699 RPGCSWVQGKEGTATFFVGDR-THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            PGCSW++ K     F  G+  +HP S+ I  +L  + +++K  G+ P+T +AL + D+ 
Sbjct: 669 NPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEM 728

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K   L  HSEKLA+A+G+LT  P   IR+TKNLR+CGDCH    F+S     EI+LRDS
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHFK+G C+C+G+W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805


>gi|293334473|ref|NP_001170726.1| uncharacterized protein LOC100384813 [Zea mays]
 gi|238007188|gb|ACR34629.1| unknown [Zea mays]
          Length = 329

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 280/329 (85%)

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MYS+ GD+DTAR VFD++ +RN VSWTS+M+GYGMHG G +A   FD+M+K G  PD ++
Sbjct: 1   MYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDIS 60

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           FLVLLYACSHSGMVDQGL YFD M +++ + A AEHYAC++DLL R  RLD+A + I+ M
Sbjct: 61  FLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEM 120

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           PMEP+ +IWVALL+ CR+H+NVEL E A N+L+ +++E DGSYTL+SNIYANA RWKDVA
Sbjct: 121 PMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVA 180

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           RIR LMK +G+KKRPGCSWVQGK+GTA+FFVGDR+HP S +IY +L  L+ RIK MGYVP
Sbjct: 181 RIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVP 240

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
           +T+FALHDVDDEEK +LL EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA T+IS
Sbjct: 241 ETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 300

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I++HEII+RDS+RFHHFK GSC+C GYW
Sbjct: 301 KIVDHEIIVRDSSRFHHFKNGSCSCGGYW 329



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 8/176 (4%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+KC  VD AR +FD++  +N    +WT M+  Y  +G   +AL +F +M Q+   V P
Sbjct: 1   MYSKCGDVDTARNVFDSMPKRNE--VSWTSMMSGYGMHGRGKEALDIFDKM-QKAGFV-P 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA-NCLIDMYSRSGDIDTA-R 517
           +  +    L AC+    +  G   +  ++R  Y+++       C+ID+ +R G +D A +
Sbjct: 57  DDISFLVLLYACSHSGMVDQGLN-YFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWK 115

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VTFLVLLYA 572
            + +   + + V W +L++   +H   + A +A +++       DG  T +  +YA
Sbjct: 116 TIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYA 171



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 9/121 (7%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YS+ G  + A  +F  M     K N V+W+++++GY   G G EALD+F +MQ  G  P+
Sbjct: 2   YSKCGDVDTARNVFDSM----PKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPD 57

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            ++ + LL  C+  G +  G   +   ++R   V  S          +ID+ A+C  +D 
Sbjct: 58  DISFLVLLYACSHSGMVDQGL-NYFDIMRRDYDVVASAEH----YACVIDLLARCGRLDK 112

Query: 410 A 410
           A
Sbjct: 113 A 113



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 37/200 (18%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG ++ A+ VF+ M  ++ VSW +M++GY   G  ++A  +F KM++     + +++  
Sbjct: 4   KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 63

Query: 321 VIAGYAQRGHGHEALDVFRQMQ--------------------FCG-------------LE 347
           ++   +  G   + L+ F  M+                     CG             +E
Sbjct: 64  LLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPME 123

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+ V  V+LLS C     + L +    Y + +++++   +     +I+ +     + K V
Sbjct: 124 PSAVIWVALLSACRVHSNVELAE----YALNKLVNMKAENDGSYTLISNIYANARRWKDV 179

Query: 408 DVARVMFDAIAPKNRDVATW 427
              R +      K R   +W
Sbjct: 180 ARIRQLMKKSGIKKRPGCSW 199


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/735 (38%), Positives = 423/735 (57%), Gaps = 28/735 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I   V+     +A  +F +M+  G  P+E+ F  V+ AC        G  VH  + 
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVV 232

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G++ +VF  NAL+ MY++   +  A  +F++M  P   D+VSWN  ++     G    
Sbjct: 233 RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKM--PA-ADVVSWNAFISGCVTHGHDHR 289

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            L L  +M     V  +  +L + L ACA  G ++ G+Q  G M +A   F+        
Sbjct: 290 ALELLLQMKSSGLVP-NVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAV--- 345

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               +V  Y++ G  +DA  +F  M + ++    + W+A+I+G +  G   E L +F +M
Sbjct: 346 ---GLVDMYAKHGFLDDARKVFDFMPRRDL----ILWNALISGCSHDGRHGEVLSLFHRM 398

Query: 342 QFCGLEPNV--VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +  GL+ +V   TL S+L   AS  A+   ++ H    K  L  D SH     VIN LID
Sbjct: 399 RKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSD-SH-----VINGLID 452

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            Y KC  +D A  +F     ++ D+ + T M+ + SQ     DA+ LF QM +  K ++P
Sbjct: 453 SYWKCGQLDYAIKVFKE--SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLR--KGLEP 508

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           ++F LS  L AC  L+A   G+Q+HA++++ Q+   + F  N L+  Y++ G I+ A + 
Sbjct: 509 DSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDV-FAGNALVYAYAKCGSIEDADMA 567

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  L +R +VSW++++ G   HG G +A   F +M  EG+AP+ +T   +L AC+H+G+V
Sbjct: 568 FSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLV 627

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D   KYF+SM + FGI    EHYAC++D+LGRA +L++A+EL+  MP +    +W ALL 
Sbjct: 628 DDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLG 687

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
             R+H + ELG +AA +L  LE EK G++ LL+N YA+AG W ++A++R LMK + VKK 
Sbjct: 688 ASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKE 747

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           P  SWV+ K+   TF VGD++HP ++ IY  LA L   +   GYVP     LHDVD  EK
Sbjct: 748 PAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEK 807

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             LL  HSE+LA+A+ +++T  G PIR+ KNLRIC DCH A  +IS I++ EII+RD NR
Sbjct: 808 ELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINR 867

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF  G+C+C  YW
Sbjct: 868 FHHFTNGTCSCGDYW 882



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 207/656 (31%), Positives = 317/656 (48%), Gaps = 42/656 (6%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALI 107
           +SL     +H  ++   L     +HL+  Y     PS A ++   I P P  V W ++L+
Sbjct: 18  RSLFAGAHLHSHLLKSGLLAGFSNHLLTLYSRCRLPSAARAVFDEI-PDPCHVSW-SSLV 75

Query: 108 RRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD 167
                  +P +A   F  M  RG   +E+  P VLK     P  R G+ VHA+  ++   
Sbjct: 76  TAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA---PDVRFGAQVHALAVATRLV 132

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQ-PGICDIVSWNTIVAAYA---QSGDAEGG 223
            +VFV NAL+A+Y     +  AR++FDE     G  + VSWNT+++AY    QSGDA G 
Sbjct: 133 HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIG- 191

Query: 224 LMLFARMTGDVKVQGD-GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +F  M    +   + G S V  ++AC    T SR  + G       V    + KDV +
Sbjct: 192 --VFREMVWSGERPNEFGFSCV--VNAC----TGSRDLEAGRQVHGAVVRTGYE-KDVFT 242

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA+V  YS++G  E A  +F+KM       +VV+W+A I+G    GH H AL++  QM+
Sbjct: 243 ANALVDMYSKLGDIEMAATVFEKMPAA----DVVSWNAFISGCVTHGHDHRALELLLQMK 298

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             GL PNV TL S+L  CA  GA  LG++ H + +K V   D        V   L+DMYA
Sbjct: 299 SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDE------FVAVGLVDMYA 352

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           K   +D AR +FD + P+ RD+  W  +I   S +G   + L+LF +M ++   +  N  
Sbjct: 353 KHGFLDDARKVFDFM-PR-RDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRT 410

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVANCLIDMYSRSGDIDTARVVFD 521
           TL+  L + A   A+   RQ+HA  L  +  +L    V N LID Y + G +D A  VF 
Sbjct: 411 TLASVLKSTASSEAICHTRQVHA--LAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFK 468

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
             +  +++S T++MT       G+ A   F QM ++GL PD      LL AC+     +Q
Sbjct: 469 ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQ 528

Query: 582 GLK-YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           G + +   + ++F     A +   +V    +   +++A     G+P E   + W A++ G
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGN--ALVYAYAKCGSIEDADMAFSGLP-ERGIVSWSAMIGG 585

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYA--NAGRWKDVARIRSLMKHT 694
              H + +      +R+L+ E       TL S + A  +AG   D  +    MK T
Sbjct: 586 LAQHGHGKRALDLFHRMLD-EGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKET 640



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 164/607 (27%), Positives = 268/607 (44%), Gaps = 76/607 (12%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G+ +H+ +  SG  +     N L+ +Y+RC   S AR +FDE+  P  C  VSW+++V A
Sbjct: 23  GAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDP--CH-VSWSSLVTA 77

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           Y+ +G     L+ F  M G   V  +  +L   L     +       + G    A  V  
Sbjct: 78  YSNNGMPRDALLAFRAMRGR-GVPCNEFALPVVLKCAPDV-------RFGAQVHALAVAT 129

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           R+ V DV   NA+V  Y   G  ++A  +F +      + N V+W+ +I+ Y +     +
Sbjct: 130 RL-VHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGD 188

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+ VFR+M + G  PN      +++ C     L  G++ H   ++        +  D+  
Sbjct: 189 AIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT------GYEKDVFT 242

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NAL+DMY+K   +++A  +F+ +     DV +W   I     +G  + AL L  QM + 
Sbjct: 243 ANALVDMYSKLGDIEMAATVFEKMPAA--DVVSWNAFISGCVTHGHDHRALELLLQM-KS 299

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
             LV PN FTLS  L ACA   A   GRQIH ++++   +    FVA  L+DMY++ G +
Sbjct: 300 SGLV-PNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVAD-FDEFVAVGLVDMYAKHGFL 357

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLY 571
           D AR VFD + +R+++ W +L++G    G   +    F +MRKEGL  D    T   +L 
Sbjct: 358 DDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLK 417

Query: 572 ACSHS-----------------------------------GMVDQGLKYFDSMSKEFGIS 596
           + + S                                   G +D  +K F     +  IS
Sbjct: 418 STASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIIS 477

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGM---PMEPTPIIWVALLNGCRIHANVELGELA 653
           +       ++  L + +  ++A++L   M    +EP   +  +LLN C   +  E G+  
Sbjct: 478 S-----TTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQV 532

Query: 654 ANRLLELESEKD-GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
              L++ +   D  +   L   YA  G  +D       M  +G+ +R   SW     G A
Sbjct: 533 HAHLIKRQFTSDVFAGNALVYAYAKCGSIEDAD-----MAFSGLPERGIVSWSAMIGGLA 587

Query: 713 TFFVGDR 719
               G R
Sbjct: 588 QHGHGKR 594


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/795 (35%), Positives = 443/795 (55%), Gaps = 51/795 (6%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSH-NAPSPALSLLQRISPSPFSVFWWNAL 106
           KS +Q   +H Q++    + +    L+ +  SH N    +L L   +   P     W ++
Sbjct: 22  KSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPP--ALAWKSV 79

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           IR      LP  +   F+ M+  G +PD   FP VLKAC  L     G S+H  I   G 
Sbjct: 80  IRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGL 139

Query: 167 DSNVFVCNALMAMYARCDTLSY-------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           D +++  NALM MY++   L         A Q+ DEM +          ++  A    G+
Sbjct: 140 DFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTE-------RTRSVRTASVLVGN 192

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                            QG  VS + A +    +   SR  +  ++E   K     +  +
Sbjct: 193 -----------------QGRKVSDIEAFNY--DVSCRSREFEAQVLEIDYKPRSEYREME 233

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
             +    +   S   S +    +F+ M ++++    V+W+ +IAG A+ G   E L + R
Sbjct: 234 ACNLGQQIKDISHSMSVDSVRKIFEMMPEKDL----VSWNTIIAGNARNGLYGETLTMVR 289

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M    L+P+  TL S+L   A    +  GKE H  +I++ L  +      + V ++LID
Sbjct: 290 EMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAE------VYVASSLID 343

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAKC  V  +  +F  +    RD  +W  +I    QNG  ++ L  F QM      +KP
Sbjct: 344 MYAKCTRVVDSYRVFTLLT--ERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAK--IKP 399

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            +++ S  + ACA L  L  G+Q+H Y+ RN ++  I F+A+ L+DMY++ G+I TAR +
Sbjct: 400 KSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENI-FIASSLVDMYAKCGNIRTARQI 458

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD ++ R++VSWT+++ G  +HG    A   F+QM+ EG+ P+ V F+ +L ACSH+G+V
Sbjct: 459 FDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLV 518

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D+  KYF+SM+ +FGI+   EHYA + DLLGRA RL+EA + I GMP+ PT  +W  LL+
Sbjct: 519 DEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLS 578

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR+H NV++ E  ANR+LE++ +  G+Y LL+NIY+ A RWK+ A+ R+ ++ TG++K 
Sbjct: 579 ACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKT 638

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           P CSW++ +     F  GD +HP  +KI E +  L++ ++  GYVP TS   HDV++E+K
Sbjct: 639 PACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQK 698

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             L+  HSE+LA+ +GI+ T  GT IR+TKNLR+C DCH+A  FIS I+  EI++RD++R
Sbjct: 699 KYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSR 758

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK G+C+C  YW
Sbjct: 759 FHHFKNGTCSCGDYW 773


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/756 (37%), Positives = 438/756 (57%), Gaps = 33/756 (4%)

Query: 84  SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           + AL++   I   P SV W   ++    R      A   + +M+  G  PD   F   + 
Sbjct: 9   ADALAVFHAIE-HPNSVSW-TLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIG 66

Query: 144 ACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
            C      + G  +HA+I  +   + ++ +  AL+ MYARC  L  AR+ FDEM   G  
Sbjct: 67  VCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM---GKK 123

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK--VQGDGVSLVNALSACASLGTWSRGK 260
            +V+WN ++A Y+++GD  G L ++  M       ++ D ++  +AL AC  +G  S+G+
Sbjct: 124 TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGR 183

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +     EA+ V       D +  NA++  YS+ GS E A  +F +++  +V    + W+ 
Sbjct: 184 EI----EARTVASGY-ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV----IAWNT 234

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I+GYA++G   +AL++F++M     +PNVVT + LL+ C ++  L  G+  H     R 
Sbjct: 235 MISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH-----RK 289

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
           +  DG +  DL++ N L++MY KC S ++ AR +F+ +  + RDV TW ++I +Y Q G 
Sbjct: 290 VREDG-YESDLVIGNVLLNMYTKCSSSLEEARQVFERM--RTRDVITWNILIVAYVQYGQ 346

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           A DAL +F QM  Q + V PN  TLS  L ACA L A R G+ +HA +   + +  +  +
Sbjct: 347 AKDALDIFKQM--QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADV-VL 403

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N L++MY+R G +D    VF  ++ +++VSW++L+  Y  HG        F ++ +EGL
Sbjct: 404 ENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGL 463

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
           A D VT +  L ACSH GM+ +G++ F SM  + G++    H+ C+VDLL RA RL+ A 
Sbjct: 464 AADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAE 523

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS-YTLLSNIYANA 678
            LI  MP  P  + W +LL+GC++H + +     A++L ELESE + S  TLLSN+YA A
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           GRW DV + R+       +K PGCS+++  +    F  GD++HP+ + I   +  L +++
Sbjct: 584 GRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQM 640

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  GYVP     LH+V +EEK  +L  HSEKLA+AYG+++T PGTP+ I KNLR C DCH
Sbjct: 641 KDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCH 700

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +A  FIS I+  +I++RDS RFHHF+ GSC+CK YW
Sbjct: 701 AAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 138/408 (33%), Positives = 214/408 (52%), Gaps = 27/408 (6%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY +C +++ A  +F  +  P   + VSW  IVAA+A++G     L  + RM  +  ++ 
Sbjct: 1   MYGKCGSVADALAVFHAIEHP---NSVSWTLIVAAFARNGHYREALGYYRRMVLE-GLRP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           DG   V A+  C+S    S+  + G +  A  +  R+   D++   A++T Y+R    E 
Sbjct: 57  DGAMFVVAIGVCSS----SKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLEL 112

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM---QFCGLEPNVVTLVS 355
           A   F +M     K  +VTW+A+IAGY++ G    AL +++ M      G++P+ +T  S
Sbjct: 113 ARKTFDEMG----KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C  VG +  G+E    T+         +  D +V NALI+MY+KC S++ AR +FD
Sbjct: 169 ALYACTVVGDISQGREIEARTVA------SGYASDSIVQNALINMYSKCGSLESARKVFD 222

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  KNRDV  W  MI  Y++ G A  AL LF +M   D   KPN  T    L AC  L 
Sbjct: 223 RL--KNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDP--KPNVVTFIGLLTACTNLE 278

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR-SGDIDTARVVFDNLKQRNVVSWTSL 534
            L  GR IH  V  + YE  +  + N L++MY++ S  ++ AR VF+ ++ R+V++W  L
Sbjct: 279 DLEQGRAIHRKVREDGYESDL-VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNIL 337

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  Y  +G    A   F QM+ E +AP+ +T   +L AC+  G   QG
Sbjct: 338 IVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG 385


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/762 (35%), Positives = 425/762 (55%), Gaps = 61/762 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I   VR+      + +F  M   G  PD+  F  VL A   L        +  ++ 
Sbjct: 191 WTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVL 250

Query: 163 SSGFDSNVFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            +GF+S+V +  +++ +Y R    L  A + FD M +    +  +W+T++AA +  G  +
Sbjct: 251 KTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVER---NEYTWSTMIAALSHGGRID 307

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + ++ R    VK      +L+  L+            +CG + EA+ +FE++    VV
Sbjct: 308 AAIAVYGR--DPVKSIPSQTALLTGLA------------RCGRITEARILFEQIPDPIVV 353

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNAM+TGY + G  ++A  LF +M   N     ++W+ +IAGYAQ G   EALD+ + +
Sbjct: 354 SWNAMITGYMQNGMVDEAKELFDRMPFRNT----ISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+ P++ +L S    C+ +GAL  G++ H   +K     +        V NALI MY
Sbjct: 410 HRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNS------YVCNALISMY 463

Query: 402 AKCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIG 432
            KC++++  R +F+ +  K+                             RDV +WT +I 
Sbjct: 464 GKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIIS 523

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           +Y+Q    ++A+  F  M  + +  KPN+  L+  L  C  L + + G+QIH   +++  
Sbjct: 524 AYAQAERGDEAVEFFKTMLHEHE--KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGM 581

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +  +  VAN L+ MY + G  D+ +V FD++++R++ +W + +TG   HGLG +A   ++
Sbjct: 582 DSEL-IVANALMSMYFKCGCADSHKV-FDSMEERDIFTWNTFITGCAQHGLGREAIKMYE 639

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M   G+ P+ VTF+ LL ACSH+G+VD+G ++F SMS+++G++   EHYAC+VDLLGR 
Sbjct: 640 HMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRT 699

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             +  A + I  MP+EP  +IW ALL  C+IH N E+G  AA +L   E    G+Y +LS
Sbjct: 700 GDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLS 759

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIY++ G W +VA +R +MK  GV K PGCSW+Q +    +F  GD+ H + ++I   L 
Sbjct: 760 NIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQ 819

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   ++  GYVP T F LHD+D+E+K   L  HSEKLA+AYG+L T  G PI+I KNLR
Sbjct: 820 DLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLR 879

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH+ I F+S +   +I +RD NRFHHF+ GSC+C  +W
Sbjct: 880 ICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 139/552 (25%), Positives = 247/552 (44%), Gaps = 83/552 (15%)

Query: 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-------- 232
           AR   L  AR++FD M      DI++WN++++AY  SG  E   +LF  ++G        
Sbjct: 44  ARLGRLREAREVFDAMPHR---DIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATI 100

Query: 233 ------------DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
                       D +   DG+   N ++  A +  +    Q G +  A+++F+ M  +DV
Sbjct: 101 LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYV---QNGDITMARRLFDAMPSRDV 157

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
            SWN+MVTGY       DA+ LFK+M Q     N+VTW+ +I+GY +     +  D+FR 
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQR----NLVTWTVMISGYVRIEQHGKGWDIFRM 213

Query: 341 MQFCGLEP---NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           M   G  P   N  +++S ++G   +G L          + R L +      D+++  ++
Sbjct: 214 MHHEGASPDQSNFASVLSAVTGLQDLGVL---------EVLRPLVLKTGFESDVVIGTSI 264

Query: 398 IDMYAK-CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           +++Y +   ++D+A   FD +  +N    TW+ MI + S  G  + A+A++     +D +
Sbjct: 265 LNVYTRDASALDIAIKFFDGMVERNE--YTWSTMIAALSHGGRIDAAIAVYG----RDPV 318

Query: 457 VK-PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
              P+   L   L  C R+   R        +L  Q    I    N +I  Y ++G +D 
Sbjct: 319 KSIPSQTALLTGLARCGRITEAR--------ILFEQIPDPIVVSWNAMITGYMQNGMVDE 370

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A+ +FD +  RN +SW  ++ GY  +G  ++A      + + G+ P   +      ACSH
Sbjct: 371 AKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSH 430

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPII 633
            G ++ G +   S++ + G    +  Y C  ++ + G+   ++   ++   M ++ T + 
Sbjct: 431 IGALETG-RQVHSLAVKAGCQFNS--YVCNALISMYGKCRNMEYVRQVFNRMRVKDT-VS 486

Query: 634 WVALLNGCRIHANVELGELAANRLLE--------LESEKDGSYTLLSNIYANAGRWKDVA 685
           W           N  +  L  N +LE        + S    S+T + + YA A R  +  
Sbjct: 487 W-----------NSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAV 535

Query: 686 RIRSLMKHTGVK 697
                M H   K
Sbjct: 536 EFFKTMLHEHEK 547



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 215/455 (47%), Gaps = 62/455 (13%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + N    NA+++ Y +   ++ AR+LFD M      D+ SWN++V  Y  S        L
Sbjct: 123 ERNTVAWNAMVSCYVQNGDITMARRLFDAMPSR---DVTSWNSMVTGYCHSRQMVDAWNL 179

Query: 227 FARM------------TGDVKVQ--GDGVSLVNAL---------SACASLGTWSRGKQ-C 262
           F +M            +G V+++  G G  +   +         S  AS+ +   G Q  
Sbjct: 180 FKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDL 239

Query: 263 GMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFED-AFALFKKMRQENVKLNVVTWSA 320
           G++E  + +  +   + DVV   +++  Y+R  S  D A   F  M    V+ N  TWS 
Sbjct: 240 GVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGM----VERNEYTWST 295

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEP--NVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +IA  +  G    A+ V+      G +P  ++ +  +LL+G A  G +         T  
Sbjct: 296 MIAALSHGGRIDAAIAVY------GRDPVKSIPSQTALLTGLARCGRI---------TEA 340

Query: 379 RVLSVDGSHPDDLMVI-NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           R+L      PD ++V  NA+I  Y +   VD A+ +FD +  +N    +W  MI  Y+QN
Sbjct: 341 RILF--EQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRN--TISWAGMIAGYAQN 396

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G + +AL L   + +    + P+  +L+ + +AC+ + AL  GRQ+H+  ++   +    
Sbjct: 397 GRSEEALDLLQALHRNG--MLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQ-FNS 453

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           +V N LI MY +  +++  R VF+ ++ ++ VSW S +     + + + A   FD M   
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM--- 510

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            L+ D V++  ++ A + +   D+ +++F +M  E
Sbjct: 511 -LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHE 544


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/764 (36%), Positives = 438/764 (57%), Gaps = 28/764 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LIA Y        A  L   I         WN++I   V       A  LF +M   G  
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVA 245

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            + YTF   L+   +    + G  +H  +  S   ++V+V NAL+AMYA+C  +  A ++
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRV 305

Query: 193 FDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           F+ M    +C D VSWNT+++   Q+      L  F  M    + + D VS++N ++A  
Sbjct: 306 FESM----LCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ-KPDQVSVLNLIAASG 360

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
             G   +GK+         +   M++      N +V  Y++    +     F+ M ++++
Sbjct: 361 RSGNLLKGKEVHAYAIRNGLDSNMQIG-----NTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               ++W+ +IAGYAQ     EA+++FR++Q  G++ + + + S+L  C+ + +    +E
Sbjct: 416 ----ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y  KR L+       D+M+ NA++++Y +   +D AR  F++I  +++D+ +WT MI
Sbjct: 472 IHGYVFKRDLA-------DIMLQNAIVNVYGEVGHIDYARRAFESI--RSKDIVSWTSMI 522

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
                NG   +AL LF  + Q +  ++P++  +  AL A A L++L+ G++IH +++R  
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTN--IQPDSIAIISALSATANLSSLKKGKEIHGFLIRKG 580

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           + +  P +A+ L+DMY+  G ++ +R +F ++KQR+++ WTS++   GMHG G+KA   F
Sbjct: 581 FFLEGP-IASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALF 639

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M  + + PD +TFL LLYACSHSG++ +G ++F+ M   + +    EHYAC+VDLL R
Sbjct: 640 KKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSR 699

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           +N L+EA   +  MP++P+  IW ALL  C IH+N ELGELAA  LL+ ++E  G Y L+
Sbjct: 700 SNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALI 759

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNI+A  GRW DV  +R  MK  G+KK PGCSW++      TF   D++HPQ+  IY  L
Sbjct: 760 SNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKL 819

Query: 732 AGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           A   + + K  GY+ QT F  H+V +EEK  +L+ HSE+LAL YG+L T  GT IRITKN
Sbjct: 820 AQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKN 879

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LRIC DCH+     S +    +++RD+NRFHHF+ G C+C  +W
Sbjct: 880 LRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  248 bits (633), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 183/635 (28%), Positives = 308/635 (48%), Gaps = 34/635 (5%)

Query: 18  TLNHLFTNIKLFSV----TTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVPP 70
           TL   F ++ L S     T +      SLLL  C   K+L Q   +H  ++  +L+    
Sbjct: 23  TLKPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLA 82

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  Y    +   A+ +   +S    ++F WNAL+   V       A  L+  M   G
Sbjct: 83  TKLVLMYGKCGSLRDAVKVFDEMSER--TIFSWNALMGAFVSSGKYLEAIELYKDMRVLG 140

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              D  TFP VLKACG L  SR G+ +H V    G+   VFVCNAL+AMY +C  L  AR
Sbjct: 141 VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGAR 200

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD +      D VSWN+I++A+   G+    L LF RM  +V V  +  + V AL   
Sbjct: 201 VLFDGIMMEKE-DTVSWNSIISAHVAEGNCLEALSLFRRMQ-EVGVASNTYTFVAALQGV 258

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                   G     M     V +     DV   NA++  Y++ G  EDA  +F+ M    
Sbjct: 259 EDPSFVKLG-----MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESM---- 309

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           +  + V+W+ +++G  Q     +AL+ FR MQ  G +P+ V++++L++     G LL GK
Sbjct: 310 LCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGK 369

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           E H Y I+  L        ++ + N L+DMYAKC  V      F+ +  K  D+ +WT +
Sbjct: 370 EVHAYAIRNGLD------SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEK--DLISWTTI 421

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  Y+QN    +A+ LF ++  Q K +  +   +   L AC+ L +  F R+IH YV + 
Sbjct: 422 IAGYAQNEFHLEAINLFRKV--QVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR 479

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
               ++  + N ++++Y   G ID AR  F++++ +++VSWTS++T    +GL  +A   
Sbjct: 480 DLADIM--LQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F  +++  + PD +  +  L A ++   + +G +    + ++ G        + +VD+  
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEGPIASSLVDMYA 596

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
               ++ + ++   +      I+W +++N   +H 
Sbjct: 597 CCGTVENSRKMFHSVKQRDL-ILWTSMINANGMHG 630


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 293/798 (36%), Positives = 451/798 (56%), Gaps = 42/798 (5%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHV-PPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           LRQC+ L  V  IH +I      +V   + ++ AY    + + A      I+    + + 
Sbjct: 34  LRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARK--NDYS 91

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W +++    +    +  +R  L + +R    P+   +  VL AC  + +   G ++H+ I
Sbjct: 92  WGSMLTAYAQ----NGHYRAALDLYKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRI 147

Query: 162 C-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             + G   +V + N+L+ MYA+C +L  A++LF+ M   G   + SWN ++AAYAQSG  
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM--SGRRSVSSWNAMIAAYAQSGHF 205

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E  + L+     D+ V+    +  + LSAC++LG   +G++   +     +  R    D+
Sbjct: 206 EEAIRLYE----DMDVEPSVRTFTSVLSACSNLGLLDQGRKIHAL-----ISSRGTELDL 256

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              NA++T Y+R    +DA  +F+++ + +V    V+WSA+IA +A+     EA++ + +
Sbjct: 257 SLQNALLTMYARCKCLDDAAKIFQRLPRRDV----VSWSAMIAAFAETDLFDEAIEFYSK 312

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK---RVLSVDGSHPDDLMVINAL 397
           MQ  G+ PN  T  S+L  CASVG L  G+  H   +    ++  V+G+         AL
Sbjct: 313 MQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGT---------AL 363

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +D+Y    S+D AR +FD I  +NRD   WTV+IG YS+ G     L L+ +M    K V
Sbjct: 364 VDLYTSYGSLDEARSLFDQI--ENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTK-V 420

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSGDIDTA 516
                  SC + ACA L A    RQ H+ +  +   M+  FV A  L++MYSR G++++A
Sbjct: 421 PATKIIYSCVISACASLGAFADARQAHSDIEADG--MISDFVLATSLVNMYSRWGNLESA 478

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R VFD +  R+ ++WT+L+ GY  HG    A   + +M  EG  P  +TF+V+LYACSH+
Sbjct: 479 RQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHA 538

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+ +QG + F S+  ++ +     HY+CI+DLL RA RL +A ELI  MP+EP  + W +
Sbjct: 539 GLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSS 598

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL   RIH +V+    AA ++ +L+     SY LLSN++A  G    +A +R+ M   GV
Sbjct: 599 LLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGV 658

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KKR G SW++  +    F VGD +HP+ Q+I+  L  L  +IK  GYVP++   LHDV +
Sbjct: 659 KKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGE 718

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK  LL  HSEKLA+A+G++ TAPGT +RI   LRIC DCHSA+ FIS I   EII+RD
Sbjct: 719 KEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRD 778

Query: 817 SNRFHHFKEGSCTCKGYW 834
           S+RFH F++G C+C  YW
Sbjct: 779 SSRFHKFRDGQCSCGDYW 796


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/733 (37%), Positives = 433/733 (59%), Gaps = 27/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN+ I   V+  +   A  LF +M   G+  + YT   VL+ C EL     G  +HA + 
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G + N+  CNAL+ MYARC  +  A ++F E+   G  D +SWN++++ Y Q+     
Sbjct: 293 KCGTEFNI-QCNALLVMYARCGWVDSALRVFREI---GDKDYISWNSMLSCYVQNRLYAE 348

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +  F  M  +     D   +V+ LSA   LG    G++      A  V +R+   D+  
Sbjct: 349 AIDFFGEMVQN-GFNPDHACIVSLLSAVGHLGRLINGREV----HAYAVKQRLD-SDLQI 402

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N ++  Y +  S E +  +F +MR ++     V+W+ +IA YAQ     EA+  FR  Q
Sbjct: 403 ANTLMDMYIKCYSVECSARVFDRMRIKDH----VSWTTIIACYAQSSRYSEAIGKFRTAQ 458

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G++ + + + S+L  C+ + ++ L K+ H Y I+  L        DL++ N +ID+Y 
Sbjct: 459 KEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLL-------DLILKNRIIDIYG 511

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  V  A  +F+ +  K  D+ TWT M+  +++NG  ++A+ALF +M      ++P++ 
Sbjct: 512 ECGEVCYALNIFEMLDKK--DIVTWTSMVNCFAENGLLHEAVALFGKMLNAG--IQPDSV 567

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            L   L A A L++L  G++IH +++R ++ +    V++ L+DMYS  G ++ A  VFD 
Sbjct: 568 ALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSS-LVDMYSGCGSMNYALKVFDE 626

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            K ++VV WT+++   GMHG G +A + F +M + G++PD V+FL LLYACSHS +VD+G
Sbjct: 627 AKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEG 686

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             Y D M  ++ +    EHYAC+VDLLGR+ + +EA + I+ MP+EP  ++W ALL  CR
Sbjct: 687 KFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACR 746

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH N EL  +A ++LLELE +  G+Y L+SN++A  G+W +V  IR+ M   G++K P C
Sbjct: 747 IHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPAC 806

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG-YVPQTSFALHDVDDEEKGD 761
           SW++      TF   D +H  SQ I+  LA + ++++  G YV  TSF LHDV +EEK D
Sbjct: 807 SWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKID 866

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSE+LA+++G+++TA GTP+RI KNLR+CGDCH     +S +   EI++RD+NRFH
Sbjct: 867 LLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFH 926

Query: 822 HFKEGSCTCKGYW 834
           HF  G+C+C  +W
Sbjct: 927 HFSGGTCSCGDFW 939



 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 165/588 (28%), Positives = 289/588 (49%), Gaps = 44/588 (7%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR----GWHPDEYTFPFVLKACGELPSSRCG 154
           +VF WNALI   +       A  ++  M       G  PD  T   VLKACG     RCG
Sbjct: 123 TVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCG 182

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           S VH +   SG D +  V NAL+ MYA+C  L  A ++F+ M      D+ SWN+ ++  
Sbjct: 183 SEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGR--DVASWNSAISGC 240

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSL-----VNALSACASLGTWSRGKQCGMMEEAK 269
            Q+G     L LF RM      Q DG S+     V  L  CA L   + G+      E  
Sbjct: 241 VQNGMFLEALDLFRRM------QSDGFSMNSYTTVGVLQVCAELAQLNHGR------ELH 288

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
               +   +  +  NA++  Y+R G  + A  +F+++  +    + ++W+++++ Y Q  
Sbjct: 289 AALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDK----DYISWNSMLSCYVQNR 344

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
              EA+D F +M   G  P+   +VSLLS    +G L+ G+E H Y +K+ L        
Sbjct: 345 LYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLD------S 398

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           DL + N L+DMY KC SV+ +  +FD +  + +D  +WT +I  Y+Q+   ++A+  F  
Sbjct: 399 DLQIANTLMDMYIKCYSVECSARVFDRM--RIKDHVSWTTIIACYAQSSRYSEAIGKFRT 456

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
              Q + +K +   +   L AC+ L ++   +Q+H+Y +RN    LI  + N +ID+Y  
Sbjct: 457 --AQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLI--LKNRIIDIYGE 512

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G++  A  +F+ L ++++V+WTS++  +  +GL  +A   F +M   G+ PD V  + +
Sbjct: 513 CGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGI 572

Query: 570 LYACSHSGMVDQGLKYFDSMSK-EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           L A +    + +G +    + + +F +       + +VD+      ++ A+++ +    +
Sbjct: 573 LGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV--VSSLVDMYSGCGSMNYALKVFDEAKCK 630

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
              ++W A++N   +H + +       R+LE     D   + L+ +YA
Sbjct: 631 DV-VLWTAMINATGMHGHGKQAIYIFKRMLETGVSPD-HVSFLALLYA 676



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 152/534 (28%), Positives = 238/534 (44%), Gaps = 43/534 (8%)

Query: 118 NAFRLFLQMMRRGWHP---DEYTFPFVLKACGELPSSRCGSSVHAVICSS-GFDSNVFVC 173
            A R       RG  P   D Y +   L A     S       HAV   + G D   F+ 
Sbjct: 37  EALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLA 96

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
             L+ MY +C  L  A +LFD M  P    + SWN ++ A   SG A   + ++  M   
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGM--PAR-TVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 234 VKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
             V G   DG +L + L AC + G      +CG       V   +    +V+ NA+V  Y
Sbjct: 154 EPVAGAAPDGCTLASVLKACGAEGD----GRCGSEVHGLAVKSGLDRSTLVA-NALVGMY 208

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           ++ G  + A  +F+ MR      +V +W++ I+G  Q G   EALD+FR+MQ  G   N 
Sbjct: 209 AKCGLLDSALRVFEWMRDGR---DVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNS 265

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            T V +L  CA +  L  G+E H   +K     +       +  NAL+ MYA+C  VD A
Sbjct: 266 YTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-------IQCNALLVMYARCGWVDSA 318

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
             +F  I  K  D  +W  M+  Y QN    +A+  F +M Q      P+   +   L A
Sbjct: 319 LRVFREIGDK--DYISWNSMLSCYVQNRLYAEAIDFFGEMVQNG--FNPDHACIVSLLSA 374

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
              L  L  GR++HAY ++ + +  +  +AN L+DMY +   ++ +  VFD ++ ++ VS
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQ-IANTLMDMYIKCYSVECSARVFDRMRIKDHVS 433

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WT+++  Y       +A   F   +KEG+  D +    +L ACS       GLK    + 
Sbjct: 434 WTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS-------GLKSISLLK 486

Query: 591 KEFGISARAEHYAC-----IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           +    + R           I+D+ G    +  A+ + E M  +   + W +++N
Sbjct: 487 QVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFE-MLDKKDIVTWTSMVN 539


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/764 (35%), Positives = 437/764 (57%), Gaps = 27/764 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR--RG 130
           LIA Y        A+ +  ++     ++  WN+++   +   + + ++ LF  ++    G
Sbjct: 237 LIAMYGKFGFVESAVKVFDKMPQR--NLVSWNSVMYACLENGVFEESYGLFKGLLNGDEG 294

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD  T   V+  C      R G   H +    G    + V ++L+ MY++C  L  AR
Sbjct: 295 LMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEAR 354

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD   +    +++SWN+++  Y++  D  G   L  +M  + KV+ + V+L+N L  C
Sbjct: 355 VLFDTNEK----NVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                + + K+         +       D +  NA V GY++ GS   A  +F  M  + 
Sbjct: 411 EEEIQFLKLKEI----HGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKM 466

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           V     +W+A+I G+ Q G   +ALD++  M+  GLEP++ T+ SLLS CA + +L  GK
Sbjct: 467 VS----SWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK 522

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           E H   ++     +G   D+ + I +L+ +Y +C  + +A++ FD +  KN  +  W  M
Sbjct: 523 EIHGSMLR-----NGFELDEFICI-SLVSLYVQCGKILLAKLFFDNMEEKN--LVCWNTM 574

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  +SQN    DAL +F QM      + P+  ++  AL AC++++ALR G+++H + +++
Sbjct: 575 INGFSQNEFPFDALDMFHQMLSSK--IWPDEISIIGALGACSQVSALRLGKELHCFAVKS 632

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
                  FV   LIDMY++ G ++ ++ +FD +  +  V+W  L+TGYG+HG G KA   
Sbjct: 633 HLTEH-SFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIEL 691

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F  M+  G  PD VTF+ LL AC+H+G+V +GL+Y   M   FGI  + EHYAC+VD+LG
Sbjct: 692 FKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLG 751

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA RL+EA+EL+  +P +P   IW +LL+ CR + ++++GE  AN+LLEL  +K  +Y L
Sbjct: 752 RAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVL 811

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           +SN YA  G+W +V ++R  MK  G++K  GCSW++     + F VGD +  QS KI + 
Sbjct: 812 ISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQT 871

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
              L ++I  +GY P TS  LH+++++EK  +L  HSEKLA+++G+L TA GT +R+ KN
Sbjct: 872 WIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKN 931

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LRIC DCH+AI  +S I   EII+RD+ RFHHFK G C+C  YW
Sbjct: 932 LRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 232/506 (45%), Gaps = 31/506 (6%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSS-GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
            +L+ CGE  +   G  +H  I +S  F ++V +   L+ MY+ CD+   +  +F+   +
Sbjct: 98  LLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRR 157

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               ++  WN +++ Y ++      + +F  M    +   D  +L   + AC  +     
Sbjct: 158 K---NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRL 214

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G+         KV     + DV   NA++  Y + G  E A  +F KM Q     N+V+W
Sbjct: 215 GEAVHGFALKTKV-----LSDVFVGNALIAMYGKFGFVESAVKVFDKMPQR----NLVSW 265

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++V+    + G   E+  +F+ +     GL P+V T+V+++  CA  G + LG   H   
Sbjct: 266 NSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLA 325

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K  L        +L V ++L+DMY+KC  +  ARV+FD      ++V +W  MIG YS+
Sbjct: 326 LKLGLC------GELKVNSSLLDMYSKCGYLCEARVLFDT---NEKNVISWNSMIGGYSK 376

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +     A  L  +M  +DK VK N  TL   L  C         ++IH Y LR+ +    
Sbjct: 377 DRDFRGAFELLRKMQMEDK-VKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSD 435

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             VAN  +  Y++ G +  A  VF  ++ + V SW +L+ G+  +G   KA   +  MR 
Sbjct: 436 ELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRG 495

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI--VDLLGRANR 614
            GL PD  T   LL AC+    +  G +   SM +        + + CI  V L  +  +
Sbjct: 496 SGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRN---GFELDEFICISLVSLYVQCGK 552

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNG 640
           +  A    + M  E   + W  ++NG
Sbjct: 553 ILLAKLFFDNME-EKNLVCWNTMING 577



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L  C     +  GR+IH ++  + +      +   L+ MYS       + +VF+  +++N
Sbjct: 100 LQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKN 159

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYACSHSGMVDQGL-KY 585
           +  W +L++GY  + L   A + F +M       PD  T   ++ AC   G+ D  L + 
Sbjct: 160 LFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC--VGVYDVRLGEA 217

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
               + +  + +       ++ + G+   ++ AV++ + MP +   + W +++  C
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP-QRNLVSWNSVMYAC 272


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/705 (38%), Positives = 416/705 (59%), Gaps = 28/705 (3%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQ 191
           PD +TFP +++A    P     + +HA     G    NVF   +L+  Y R   ++ A +
Sbjct: 67  PDSFTFPPLVRAA---PGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR 123

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FDEM +    D+ +WN +++   ++  A   + L  RM G+  V GD V+L + L  C 
Sbjct: 124 VFDEMPER---DVPAWNAMLSGLCRNTRAADAVTLLGRMVGE-GVAGDAVTLSSVLPMCV 179

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            LG     +   ++     V   +   ++   NA++  Y ++G   +A  +F  M   ++
Sbjct: 180 VLGD----RALALVMHVYAVKHGLS-GELFVCNALIDVYGKLGMLTEAHWVFGGMALRDL 234

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               VTW+++I+   Q G    A+++F  M   G+ P+V+TLVSL S  A  G  L  K 
Sbjct: 235 ----VTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKS 290

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            HCY  +R   V      D++  NA++DMYAK   +D A+ +FD +   +RDV +W  +I
Sbjct: 291 VHCYVRRRGWDVG-----DIIAGNAMVDMYAKMSKIDAAQKVFDNL--PDRDVVSWNTLI 343

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y QNG AN+A+ ++  M   + L KP   T    L A + L  L+ G ++HA  ++  
Sbjct: 344 TGYMQNGLANEAIRIYNDMHNHEGL-KPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTG 402

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             + + +V  CLID+Y++ G +  A  +F+++ +R+   W +++ G G+HG G KA   F
Sbjct: 403 LNLDV-YVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLF 461

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            QM++E + PD VTF+ LL ACSH+G+VDQG  +FD M   +GI   A+HY C+VD+LGR
Sbjct: 462 SQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGR 521

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A +LDEA E I+ MP++P   +W ALL  CRIH NVE+G++A+  L EL+ E  G Y L+
Sbjct: 522 AGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLM 581

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT--HPQSQKIYE 729
           SN+YA  G+W  V  +RSL++   ++K PG S ++ K   + F+ G +T  HPQ ++I  
Sbjct: 582 SNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQR 641

Query: 730 ILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITK 789
            L  L+ ++K+ GYVP  SF L DV+++EK  +L  HSE+LA+A+GI+ T PGTP+ I K
Sbjct: 642 GLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYK 701

Query: 790 NLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           NLR+CGDCHSA  +IS I   EII+RD+NRFHHFK+G C+C  +W
Sbjct: 702 NLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 220/477 (46%), Gaps = 40/477 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA++    R     +A  L  +M+  G   D  T   VL  C  L        +H    
Sbjct: 136 WNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAV 195

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G    +FVCNAL+ +Y +   L+ A  +F  M    + D+V+WN+I++A  Q G    
Sbjct: 196 KHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGM---ALRDLVTWNSIISANEQGGKVAA 252

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV--FERMK---V 277
            + LF  M  +  V  D ++LV+  SA A         QCG    AK V  + R +   V
Sbjct: 253 AVELFHGMM-ESGVCPDVLTLVSLASAVA---------QCGDELGAKSVHCYVRRRGWDV 302

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+++ NAMV  Y+++   + A  +F  +       +VV+W+ +I GY Q G  +EA+ +
Sbjct: 303 GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR----DVVSWNTLITGYMQNGLANEAIRI 358

Query: 338 FRQMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +  M    GL+P   T VS+L   + +G L  G   H  +IK  L++      D+ V   
Sbjct: 359 YNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNL------DVYVTTC 412

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LID+YAKC  +  A  +F+ +    R    W  +I     +G    AL+LF QM Q++  
Sbjct: 413 LIDLYAKCGKLVEAMFLFEHM--PRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEE-- 468

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDID 514
           +KP+  T    L AC+    +  GR    + L      ++P   +  C++DM  R+G +D
Sbjct: 469 IKPDHVTFVSLLAACSHAGLVDQGRSF--FDLMQTVYGIVPIAKHYTCMVDMLGRAGQLD 526

Query: 515 TARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            A     ++  + +   W +L+    +HG  +    A   + +  L P+ V + VL+
Sbjct: 527 EAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFE--LDPENVGYYVLM 581


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 308/891 (34%), Positives = 471/891 (52%), Gaps = 114/891 (12%)

Query: 37  IKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPS--PALSLLQ 91
           +K  S +LR+C   +SL     IH  +IV+++ + P SHL  + V+  A     A + L 
Sbjct: 112 LKYYSSMLRECASKRSLGVAKAIHG-LIVKDVIN-PDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
                   V  W ALI+  V     +++  LF +M   G  P+E+T    LKAC    + 
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G  +HA     G   ++FV +AL+ +YA+C  +  A ++F  M  P   D V+WN ++
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGM--PEQND-VTWNVLL 286

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------- 260
             YAQ GD  G L LF  M  ++ V+ +  +L   L  CA+     +G+           
Sbjct: 287 NGYAQRGDVTGVLKLFCSMM-ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY 345

Query: 261 ---------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                          +CG+  +A  VF+ +K  D+V W+A++T   + G  E++  LF  
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHL 405

Query: 306 MR------------------------QENVKLNVVTW-----------SAVIAGYAQRGH 330
           MR                        Q    ++   W           +A++  Y + G 
Sbjct: 406 MRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC 465

Query: 331 GHEALDVFRQM---------------QFCGLE----------------PNVVTLVSLLSG 359
            H+   ++  M                 CG+                 PN+ T +S+L  
Sbjct: 466 VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C+ +  +  G++ H + IK  L       D+  V  ALIDMYAKC  ++ A V F+ ++ 
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLD------DNNFVCTALIDMYAKCMYLEDADVAFNRLSV 579

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
             RD+ TWTV+I +Y+Q      AL  F QM Q+   VKPN FTL+  L  C+ LA+L  
Sbjct: 580 --RDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG--VKPNEFTLAGCLSGCSSLASLEG 635

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+Q+H+ V ++ +   + FV + L+DMY++ G ++ A  +F+ L +R+ ++W +++ GY 
Sbjct: 636 GQQLHSMVFKSGHVSDM-FVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
            +G G+KA  AF  M  EG++PDGVTF  +L ACSH G+V++G ++F+SM ++FGIS   
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           +H AC+VD+LGR  + DE  + I+ M +    +IW  +L   ++H N+ LGE AAN+L E
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           L+ E++ SY LLSNI+A  GRW DV R+RSLM   GVKK PGCSWV+      TF   D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
           +HPQ Q+I+  L  L + + ++ YVP+T + LH+V + EK + L  HSE+LAL + +++T
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           +    IRI KNLRIC DCH  +  IS I N EI++RD  RFHHFK G+C+C
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/798 (36%), Positives = 451/798 (56%), Gaps = 43/798 (5%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHV-PPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           LRQC+ L  V  IH +I      +V   + ++ AY    + + A +    I+    + + 
Sbjct: 34  LRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARK--NDYS 91

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W +++    +    +  +R  L + +R    P+   +  VL AC  + +   G ++H+ I
Sbjct: 92  WGSMLTAYAQ----NGHYRAALDLYKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRI 147

Query: 162 C-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             + G   +V + N+L+ MYA+C +L  A++LF+ M    +    SWN ++AAYAQSG  
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVS---SWNAMIAAYAQSGHF 204

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E  + L+     D+ V+    +  + LSAC++LG   +G++   +     +  R    D+
Sbjct: 205 EEAIRLYE----DMDVEPSVRTFTSVLSACSNLGLLDQGRKIHAL-----ISSRGTELDL 255

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              NA++T Y+R    +DA  +F+++ + +V    V+WSA+IA +A+     EA++ + +
Sbjct: 256 SLQNALLTMYARCKCLDDAAKIFQRLPRRDV----VSWSAMIAAFAETDLFDEAIEFYSK 311

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK---RVLSVDGSHPDDLMVINAL 397
           MQ  G+ PN  T  S+L  CASVG L  G+  H   +    ++  V+G+         AL
Sbjct: 312 MQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGT---------AL 362

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +D+Y    S+D AR +FD I  +NRD   WTV+IG YS+ G     L L+ +M    K V
Sbjct: 363 VDLYTSYGSLDEARSLFDQI--ENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTK-V 419

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSGDIDTA 516
                  SC + ACA L A    RQ H+ +  +   M+  FV A  L++MYSR G++++A
Sbjct: 420 PATKIIYSCVISACASLGAFADARQAHSDIEADG--MISDFVLATSLVNMYSRWGNLESA 477

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R VFD +  R+ ++WT+L+ GY  HG    A   + +M  EG  P  +TF+V+LYACSH+
Sbjct: 478 RQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHA 537

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+ +QG + F S+  ++ +     HY+CI+DLL RA RL +A ELI  MP+EP  + W +
Sbjct: 538 GLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSS 597

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL   RIH +V+    AA ++ +L+     SY LLSN++A  G    +A +R+ M   GV
Sbjct: 598 LLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGV 657

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KKR G SW++  +    F VGD +HP+ Q+I+  L  L  +IK  GYVP++   LHDV +
Sbjct: 658 KKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGE 717

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK  LL  HSEKLA+A+G++ TAPGT +RI   LRIC DCHSA+ FIS I   EII+RD
Sbjct: 718 KEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRD 777

Query: 817 SNRFHHFKEGSCTCKGYW 834
           S+RFH F++G C+C  YW
Sbjct: 778 SSRFHKFRDGQCSCGDYW 795


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/766 (37%), Positives = 425/766 (55%), Gaps = 27/766 (3%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L   ++S N    A  +  +I P P SV  WN +IR          +  L+L M++ G
Sbjct: 45  TQLARYHISRNEIQLARHVFDQI-PKP-SVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG 102

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P  +TFPF+LKAC  L + + G  +H      G   +++V  AL+ MYA+C  L  A+
Sbjct: 103 VTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQ 162

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LF+ +      DIV+WN ++AA++        +   A+M     V  +  +LV+ L   
Sbjct: 163 TLFNSISHQDR-DIVAWNAMIAAFSFHALHAQTIHSVAQMQ-QAGVTPNSSTLVSILPTI 220

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                  +GK           F+     +VV   A++  Y++      A  +F  + ++N
Sbjct: 221 GQANALHQGKAIHAYYIRNFFFD-----NVVLQTALLDMYAKCHLLFYARKIFNTVNKKN 275

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLSGCASVGALLL 368
                V WSA+I GY       +AL ++  M  C  GL P   TL ++L  CA +  L  
Sbjct: 276 D----VCWSAMIGGYVLHDSISDALALYDDM-LCIYGLNPTPATLATMLRACAQLTDLKR 330

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK+ HC+ IK  + +D +      V N+LI MYAKC  +D A    D +  K  D  +++
Sbjct: 331 GKKLHCHMIKSGMDLDTT------VGNSLISMYAKCGIMDNAVGFLDEMIAK--DTVSYS 382

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I    QNG A  AL +F QM  Q   + P   T+   L AC+ LAAL+ G   H Y +
Sbjct: 383 AIISGCVQNGYAEKALLIFRQM--QSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTV 440

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
              +      + N +IDMYS+ G I  +R +FD ++ R+++SW +++ GYG+HGL  +A 
Sbjct: 441 VRGFTNDTS-ICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEAL 499

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F +++  GL PD VT + +L ACSHSG+V +G  +F SMS+ F I  R  HY C+VDL
Sbjct: 500 SLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDL 559

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           L RA  LDEA   I+ MP  P   IW ALL  CR H N+E+GE  + ++  L  E  G++
Sbjct: 560 LARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNF 619

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            L+SNIY++ GRW D A IRS+ +H G KK PGCSWV+       F  G ++HPQS  I 
Sbjct: 620 VLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASIN 679

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           + L  L+ ++K +GY   +SF LHDV++EEK  +L  HSEK+A+A+GIL T+P + I +T
Sbjct: 680 KKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVT 739

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLRIC DCHSAI FI+++   EI +RD++RFHHFK+G C C+ +W
Sbjct: 740 KNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 174/359 (48%), Gaps = 12/359 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           +A  T  +R     +   L + +  +  K +VV W+ +I  YA  G   +++ ++  M  
Sbjct: 41  DAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQ 100

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P   T   LL  C+S+ AL LG+  H +     LS+      DL V  AL+ MYAK
Sbjct: 101 LGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSM------DLYVSTALLHMYAK 154

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +  A+ +F++I+ ++RD+  W  MI ++S +      +    QM  Q   V PN+ T
Sbjct: 155 CGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQM--QQAGVTPNSST 212

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L   L    +  AL  G+ IHAY +RN +   +  +   L+DMY++   +  AR +F+ +
Sbjct: 213 LVSILPTIGQANALHQGKAIHAYYIRNFFFDNV-VLQTALLDMYAKCHLLFYARKIFNTV 271

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR-KEGLAPDGVTFLVLLYACSHSGMVDQG 582
            ++N V W++++ GY +H     A   +D M    GL P   T   +L AC+    + +G
Sbjct: 272 NKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG 331

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
            K    M K  G+         ++ +  +   +D AV  ++ M  + T + + A+++GC
Sbjct: 332 KKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT-VSYSAIISGC 388


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/756 (37%), Positives = 438/756 (57%), Gaps = 33/756 (4%)

Query: 84  SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           + AL++   I   P SV W   ++    R      A   + +M+  G  PD   F   + 
Sbjct: 9   ADALAVFHAIE-HPNSVSW-TLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIG 66

Query: 144 ACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
            C      + G  +HA+I  +   + ++ +  AL+ MYARC  L  AR+ FDEM   G  
Sbjct: 67  VCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM---GKK 123

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK--VQGDGVSLVNALSACASLGTWSRGK 260
            +V+WN ++A Y+++GD  G L ++  M       ++ D ++  +AL AC+ +G  S+G+
Sbjct: 124 TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGR 183

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +     EA+ V       D +  NA++  YS+ GS E A  +F +++  +V    + W+ 
Sbjct: 184 EI----EARTVASGY-ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV----IAWNT 234

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I+GYA++G   +AL++F++M     +PNVVT + LL+ C ++  L  G+  H     R 
Sbjct: 235 MISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH-----RK 289

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
           +   G +  DL++ N L++MY KC S ++ AR +F+ +  + RDV TW ++I +Y Q G 
Sbjct: 290 VKEHG-YESDLVIGNVLLNMYTKCSSSLEEARQVFERL--RTRDVITWNILIVAYVQYGQ 346

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           A DAL +F QM  Q + V PN  TLS  L ACA L A R G+ +HA +   + +  +  +
Sbjct: 347 AKDALDIFKQM--QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADV-VL 403

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N L++MY+R G +D    VF  ++ +++VSW++L+  Y  HG        F ++ +EGL
Sbjct: 404 ENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGL 463

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
           A D VT +  L ACSH GM+ +G++ F SM  + G++    H+ C+VDLL RA RL+ A 
Sbjct: 464 AADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAE 523

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS-YTLLSNIYANA 678
            LI  MP  P  + W +LL+GC++H + +     A++L ELESE + S  TLLSN+YA A
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           GRW DV + R+       +K PGCS+++  +    F  GD++HP+ + I   +  L +++
Sbjct: 584 GRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQM 640

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  GYVP     LH+V +EEK  +L  HSEKLA+AYG+++T PGTP+ I KNLR C DCH
Sbjct: 641 KDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCH 700

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +A  FIS I+  +I++RDS RFHHF+ GSC+CK YW
Sbjct: 701 AAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/408 (33%), Positives = 213/408 (52%), Gaps = 27/408 (6%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY +C +++ A  +F  +  P   + VSW  IVAA+A++G     L  + RM  +  ++ 
Sbjct: 1   MYGKCGSVADALAVFHAIEHP---NSVSWTLIVAAFARNGHYREALGYYRRMVLE-GLRP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           DG   V A+  C+S     +G+    M    ++ E     D++   A++T Y+R    E 
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEF----DIILGTALITMYARCRDLEL 112

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM---QFCGLEPNVVTLVS 355
           A   F +M     K  +VTW+A+IAGY++ G    AL +++ M      G++P+ +T  S
Sbjct: 113 ARKTFDEMG----KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C+ VG +  G+E    T+         +  D +V NALI+MY+KC S++ AR +FD
Sbjct: 169 ALYACSVVGDISQGREIEARTVA------SGYASDSIVQNALINMYSKCGSLESARKVFD 222

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  KNRDV  W  MI  Y++ G A  AL LF +M   D   KPN  T    L AC  L 
Sbjct: 223 RL--KNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDP--KPNVVTFIGLLTACTNLE 278

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR-SGDIDTARVVFDNLKQRNVVSWTSL 534
            L  GR IH  V  + YE  +  + N L++MY++ S  ++ AR VF+ L+ R+V++W  L
Sbjct: 279 DLEQGRAIHRKVKEHGYESDL-VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNIL 337

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  Y  +G    A   F QM+ E +AP+ +T   +L AC+  G   QG
Sbjct: 338 IVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG 385



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY + G +  A  VF  ++  N VSWT ++  +  +G   +A   + +M  EGL PDG  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 566 FLVLLYACSHSGMVDQG----LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           F+V +  CS S  + QG        ++   EF I         ++ +  R   L+ A + 
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILG----TALITMYARCRDLELARKT 116

Query: 622 IEGMPMEPTPIIWVALLNG 640
            + M  + T + W AL+ G
Sbjct: 117 FDEMG-KKTLVTWNALIAG 134


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/640 (41%), Positives = 396/640 (61%), Gaps = 28/640 (4%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           ++ SWN+++A  A+SGD+   L  F+ M   + ++ +  +   A+ +C++L     G+Q 
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMR-KLSLKPNRSTFPCAIKSCSALLDLHSGRQ- 173

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
              +     FE     D+   +A+V  YS+ G   DA  LF ++   N+    V+W+++I
Sbjct: 174 AHQQALIFGFE----PDLFVSSALVDMYSKCGELRDARTLFDEISHRNI----VSWTSMI 225

Query: 323 AGYAQRGHGHEALDVFRQ--MQFCGLEPN------VVTLVSLLSGCASVGALLLGKETHC 374
            GY Q    H AL +F++  ++  G E +       + +VS+LS C+ V    + +  H 
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           + IKR          DL V N L+D YAKC  + V+R +FD +A   RDV +W  +I  Y
Sbjct: 286 FLIKR------GFEGDLGVENTLMDAYAKCGELGVSRRVFDGMA--ERDVISWNSIIAVY 337

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +QNG + +++ +F +M + D  +  NA TLS  L+ACA   + R G+ IH  V++   E 
Sbjct: 338 AQNGMSTESMEIFHRMVK-DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES 396

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            + FV   +IDMY + G ++ AR  FD ++++NV SW++++ GYGMHG   +A   F +M
Sbjct: 397 NV-FVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM 455

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
              G+ P+ +TF+ +L ACSH+G++++G  +F +MS EF +    EHY C+VDLLGRA  
Sbjct: 456 NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGY 515

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L EA +LI+GM + P  ++W ALL  CR+H NV+LGE++A +L EL+ +  G Y LLSNI
Sbjct: 516 LKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNI 575

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA+AGRW+DV R+R LMK++G+ K PG S V  K     F VGDR HPQ +KIYE L  L
Sbjct: 576 YADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKL 635

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
             +++ +GYVP  +  LHDV  EEK  +L  HSEKLA+A+GI+ T PGT I I KNLR+C
Sbjct: 636 SMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVC 695

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GDCH+AI FIS I++ EI++RDS RFHHF++G C+C  YW
Sbjct: 696 GDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 151/499 (30%), Positives = 241/499 (48%), Gaps = 39/499 (7%)

Query: 84  SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           +P L+ L        +VF WN++I    R      A R F  M +    P+  TFP  +K
Sbjct: 101 NPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIK 160

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           +C  L     G   H      GF+ ++FV +AL+ MY++C  L  AR LFDE+      +
Sbjct: 161 SCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR---N 217

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARM-------TGDVKVQGDGVSLVNALSACASLGTW 256
           IVSW +++  Y Q+ DA   L+LF           GD +V  D +++V+ LSAC+ +   
Sbjct: 218 IVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEK 277

Query: 257 SRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
           S  +   G +   K+ FE     D+   N ++  Y++ G    +  +F  M + +V    
Sbjct: 278 SITEGVHGFL--IKRGFE----GDLGVENTLMDAYAKCGELGVSRRVFDGMAERDV---- 327

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHC 374
           ++W+++IA YAQ G   E++++F +M   G +  N VTL ++L  CA  G+  LGK  H 
Sbjct: 328 ISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHD 387

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
             IK  L        ++ V  ++IDMY KC  V++AR  FD +  KN  V +W+ M+  Y
Sbjct: 388 QVIKMGLE------SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKN--VKSWSAMVAGY 439

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
             +G A +AL +F +M      VKPN  T    L AC+    L  G   H +   +    
Sbjct: 440 GMHGHAKEALEVFYEMNMAG--VKPNYITFVSVLAACSHAGLLEEG--WHWFKAMSHEFD 495

Query: 495 LIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAF 551
           + P V +  C++D+  R+G +  A  +   +K R + V W +L+    MH   D    + 
Sbjct: 496 VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISA 555

Query: 552 DQMRKEGLAPDGVTFLVLL 570
            ++ +  L P    + VLL
Sbjct: 556 RKLFE--LDPKNCGYYVLL 572



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 24/265 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V  WN++I    +  +   +  +F +M++ G  + +  T   VL AC    S R G  +H
Sbjct: 327 VISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH 386

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   G +SNVFV  +++ MY +C  +  AR+ FD M +    ++ SW+ +VA Y   G
Sbjct: 387 DQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK---NVKSWSAMVAGYGMHG 443

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            A+  L +F  M     V+ + ++ V+ L+AC+           G++EE    F+ M  +
Sbjct: 444 HAKEALEVFYEMNM-AGVKPNYITFVSVLAACS---------HAGLLEEGWHWFKAMSHE 493

Query: 279 -----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                 V  +  MV    R G  ++AF L K M+   ++ + V W A++   A R H + 
Sbjct: 494 FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK---LRPDFVVWGALLG--ACRMHKNV 548

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLS 358
            L      +   L+P       LLS
Sbjct: 549 DLGEISARKLFELDPKNCGYYVLLS 573


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/769 (36%), Positives = 430/769 (55%), Gaps = 109/769 (14%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VH  +  SG   +V++ N LM +Y++     +AR+LFDEM    +    SWNT+++AYA+
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEM---PLRTAFSWNTVLSAYAK 92

Query: 217 SGDAEGGLMLFARM---------------------------TGDVKVQG---DGVSLVNA 246
            GD +     F R+                            G++  +G      +L N 
Sbjct: 93  RGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNV 152

Query: 247 LSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDV 280
           L++ A+      GK+                          CG    AK VF+RM VKD+
Sbjct: 153 LASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDI 212

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
            SWNAM+  + ++G  + A A F++M + ++    VTW+++I+GY QRG+   ALD+F +
Sbjct: 213 SSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGYNQRGYDLRALDMFSK 268

Query: 341 M-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           M +   L P+  TL S+LS CA++  L +G++ H + +     + G      +V+NALI 
Sbjct: 269 MLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISG------IVLNALIS 322

Query: 400 MYAKCKSVDVARVM---------------------------------FDAIAPKNRDVAT 426
           MY++C  V+ AR +                                 FD++  K+RDV  
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSL--KDRDVVA 380

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT MI  Y Q+G   +A+ LF  M  +++  +PN++TL+  L   + LA+L  G+QIH  
Sbjct: 381 WTAMIVGYEQHGLYGEAINLFRSMVGEEQ--RPNSYTLAAMLSVASSLASLGHGKQIHGS 438

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGD 545
            +++  E+    V+N LI MY+++G I +A   FD ++ +R+ VSWTS++     HG  +
Sbjct: 439 AVKSG-EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F+ M  EGL PD +T++ +  AC+H+G+V+QG +YFD M     I     HYAC+
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACM 557

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDL GRA  L EA E IE MP+EP  + W +LL+ CR++ N++LG++AA RLL LE E  
Sbjct: 558 VDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENS 617

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y+ L+N+Y+  G+W++ A+IR  MK   VKK  G SW++ K     F V D  HPQ  
Sbjct: 618 GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKN 677

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +IY  +  +   IK MGYVP T+  LHD+++E K  +L  HSEKLA+A+G+++T   T +
Sbjct: 678 EIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTL 737

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RI KNLR+C DCH+AI FIS ++  EII+RD+ RFHHFK+G C+C+ YW
Sbjct: 738 RIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 147/526 (27%), Positives = 240/526 (45%), Gaps = 80/526 (15%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +++AY        +     R+ P   SV W   +I     +     A R+  +MMR G  
Sbjct: 86  VLSAYAKRGDMDSSCEFFDRL-PQRDSVSW-TTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P ++T   VL +         G  VH+ I   G   NV V N+L+ MYA+C     A+ +
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 193 FDEMFQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGL 224
           FD M    I                             DIV+WN++++ Y Q G     L
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------------- 261
            +F++M  D  +  D  +L + LSACA+L     G+Q                       
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 262 ---CGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
              CG +E A+++ E+   KD  +  + A++ GY ++G   +A  +F  ++      +VV
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDR----DVV 379

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            W+A+I GY Q G   EA+++FR M      PN  TL ++LS  +S+ +L  GK+ H   
Sbjct: 380 AWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSA 439

Query: 377 IK--RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           +K   + SV         V NALI MYAK  S+  A   FD I  + RD  +WT MI + 
Sbjct: 440 VKSGEIYSVS--------VSNALITMYAKAGSITSASRAFDLIRCE-RDTVSWTSMIIAL 490

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q+G A +AL LF  M  +   ++P+  T      AC     +  GRQ   + +    + 
Sbjct: 491 AQHGHAEEALELFETMLMEG--LRPDHITYVGVFSACTHAGLVNQGRQY--FDMMKDVDK 546

Query: 495 LIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG 537
           +IP +++  C++D++ R+G +  A+   + +  + +VV+W SL++ 
Sbjct: 547 IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 40/165 (24%)

Query: 459 PNAFTLSCALMACARL-------AALRFGRQ-IHAYVLRNQYEMLIPFVANCLIDMYSRS 510
           P   +LS  L  C  L       +  RF  Q +H  V+++     + ++ N L+++YS++
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSV-YLMNNLMNVYSKT 62

Query: 511 -------------------------------GDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
                                          GD+D++   FD L QR+ VSWT+++ GY 
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYK 122

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             G   KA     +M +EG+ P   T   +L + + +  ++ G K
Sbjct: 123 NIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKK 167


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/760 (38%), Positives = 425/760 (55%), Gaps = 54/760 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR---CGSSVHA 159
           WN++I    R    + A + F  M+  G+ P  +T   +  AC  L        G  +H 
Sbjct: 81  WNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHG 140

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G     F  NALMAMYA+   L  A+ L   +F+    D+V+WN+++++++Q+  
Sbjct: 141 CCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLL-VLFEDR--DLVTWNSMISSFSQNER 196

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               LM F R+     V+ DGV+  + L AC+ L     GK+             ++  D
Sbjct: 197 FMEALM-FLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA--------LRTDD 247

Query: 280 VVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           V+      +A+V  Y   G  E    +F  +    + L    W+A+IAGYAQ  H  +AL
Sbjct: 248 VIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGL----WNAMIAGYAQSEHDEKAL 303

Query: 336 DVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
            +F +M+   GL  N  T+ S++        +   +  H Y IKR L  +        + 
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETN------RYLQ 357

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM---- 450
           NALIDMY++   +  ++ +FD++  ++RD+ +W  +I SY   G ++DAL L  +M    
Sbjct: 358 NALIDMYSRMGDIKTSKRIFDSM--EDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIE 415

Query: 451 --------FQQDKLV--KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
                   +  +K V  KPN+ TL   L  CA L+AL  G++IHAY +RN     +  V 
Sbjct: 416 EKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVT-VG 474

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-- 558
           + L+DMY++ G ++ AR VFD +  RNV++W  ++  YGMHG G ++   F+ M  EG  
Sbjct: 475 SALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAK 534

Query: 559 ---LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
              + P  VTF+ L  +CSHSGMVD+GL  F  M  E GI    +HYACIVDL+GRA ++
Sbjct: 535 GGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKV 594

Query: 616 DEAVELIEGMPMEPTPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           +EA  L+  MP     +  W +LL  CRI+ N+E+GE+AA  LL+L+ +    Y LLSNI
Sbjct: 595 EEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNI 654

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           Y++AG W     +R  MK  GVKK PGCSW++  +    F  GD +HPQS+K+++ L  L
Sbjct: 655 YSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETL 714

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
            +R+K  GYVP T+  LHD+D+EEK  +L  HSEKLA+A+GIL T PGT IR+ KNLR+C
Sbjct: 715 SERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVC 774

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCH+A  FIS I + EIILRD+ RFHHFK+G+C+C  YW
Sbjct: 775 NDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 18/275 (6%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N +V  Y + G   DA+ +F ++ + +     V+W+++I+   +      A+  FR M  
Sbjct: 51  NTLVNMYGKCGGLGDAYKVFDRITERDQ----VSWNSIISALCRFEEWEVAIKAFRLMLM 106

Query: 344 CGLEPNVVTLVSLLSGCASV---GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
            G EP+  TLVS+   C+++     L LGK+ H    ++      S+       NAL+ M
Sbjct: 107 EGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN-------NALMAM 159

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAK   +D A+ +   +  ++RD+ TW  MI S+SQN    +AL     M  +   VKP+
Sbjct: 160 YAKLGRLDDAKSLL--VLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEG--VKPD 215

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T +  L AC+ L  LR G++IHAY LR    +   FV + L+DMY   G +++ R+VF
Sbjct: 216 GVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVF 275

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           D++  R +  W +++ GY      +KA   F +M 
Sbjct: 276 DSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEME 310



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF-VANCLIDMYSRSGDIDTAR 517
           P+ F     L A A +  L  G+QIHA+V +  Y       + N L++MY + G +  A 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
            VFD + +R+ VSW S+++        + A  AF  M  EG  P   T + +  ACS+
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN 125


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/797 (36%), Positives = 439/797 (55%), Gaps = 98/797 (12%)

Query: 92  RISPSP-----FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146
           RIS +P       V  +NA I    +L   +NA  L     +     +  T+  VL+ C 
Sbjct: 53  RISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKS--ELETKTYGSVLQLCA 110

Query: 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM---------- 196
            L S   G  VH++I S+    +  +   L++ YA C  L   R++FD M          
Sbjct: 111 GLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNF 170

Query: 197 ----------FQPGIC----------------------------DIVSWNTIVAAYAQSG 218
                     F+  IC                            D++SWN++++ Y  +G
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNG 230

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             E GL ++ +M   + +  D  ++++ L  CA+ GT S GK    +   K  FER    
Sbjct: 231 LTERGLGIYKQMMY-LGIDVDLATIISVLVGCANSGTLSLGKAVHSLA-IKSSFERR--- 285

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            +   N ++  YS+ G  + A  +F+KM + NV    V+W+++IAGY + G    A+ + 
Sbjct: 286 -INFSNTLLDMYSKCGDLDGALRVFEKMGERNV----VSWTSMIAGYTRDGWSDGAIILL 340

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +QM+  G++ +VV + S+L  CA  G+L  GK+ H Y     ++       +L V NAL+
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA------SNLFVCNALM 394

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC S++ A  +F  +  K  D+ +W  M+G                        +K
Sbjct: 395 DMYAKCGSMEGANSVFSTMVVK--DIISWNTMVGE-----------------------LK 429

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P++ T++C L ACA L+AL  G++IH Y+LRN Y      VAN L+D+Y + G +  AR+
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSS-DRHVANALVDLYVKCGVLGLARL 488

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD +  +++VSWT ++ GYGMHG G++A   F++MR  G+ PD V+F+ +LYACSHSG+
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++QG ++F  M  +F I  + EHYAC+VDLL R   L +A + IE +P+ P   IW ALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALL 608

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
            GCRI+ ++EL E  A R+ ELE E  G Y LL+NIYA A + ++V R+R  +   G++K
Sbjct: 609 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRK 668

Query: 699 RPGCSWVQGKEGTATFFVGDR-THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            PGCSW++ K     F  G+  +HP S+KI  +L  + +++K  GY P+T +AL + D+ 
Sbjct: 669 NPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 728

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K   L  HSEKLA+A+G+LT  P   IR+TKNLR+CGDCH    F+S     EI+LRDS
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHFK+G C+C+G+W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/736 (37%), Positives = 426/736 (57%), Gaps = 26/736 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVH 158
           V+ WN++I    R+     A   F + +   +   D YTFP V++ACG L   R    VH
Sbjct: 106 VYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGR---KVH 162

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++   GF+ +V++  + +  Y+R   +S A  LFD M    I DI +WN +++ +  +G
Sbjct: 163 CLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMM---IRDIGTWNAMISGFYLNG 219

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L +F  M     V  D V++ + L  C  L     G    ++     +   ++  
Sbjct: 220 KVAEALEVFDEMRFK-SVSMDSVTISSLLPICVQLDDIISG----VLIHVYAIKLGLEF- 273

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+   NA++  Y++ G    A  +F +M+  ++    V+W++++A + Q      AL V+
Sbjct: 274 DLFVCNALINMYAKFGELRSAETIFNQMKVRDI----VSWNSLLAAFEQNKKPVIALGVY 329

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M   G+ P+++TLVSL S  A +G  L  +  H +  +R   +      D+ + NA+I
Sbjct: 330 NKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLH-----DIALGNAII 384

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAK   +D AR +F+ +  K  DV +W  +I  YSQNG AN+A+ ++  M      V 
Sbjct: 385 DMYAKLGFIDSARKVFEGLPVK--DVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV- 441

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  T    L A ++L AL+ G + H  +++N     I FV+ CL+DMY + G +  A  
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDI-FVSTCLVDMYGKCGKLADALS 500

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F  +  ++ VSW ++++ +G+HG G KA   F +M+ EG+ PD +TF+ LL ACSHSG+
Sbjct: 501 LFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGL 560

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           VD+G   F  M + +GI    +HY C+VDL GRA  L++A   ++ MP+ P   +W ALL
Sbjct: 561 VDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALL 620

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH NVEL    ++ LL++ESE  G Y LLSNIYA  G W+ V  +RSL +  G+KK
Sbjct: 621 GACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKK 680

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG S ++  +    F+ G++THP+ ++IY  L  L  ++K++GYVP  +F L DV+D+E
Sbjct: 681 TPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDE 740

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K ++L  HSE+LA+A+GI++T P T ++I KNLR+CGDCH+A  FIS I   EII+RDSN
Sbjct: 741 KENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSN 800

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 801 RFHHFKDGVCSCGDYW 816



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 176/362 (48%), Gaps = 32/362 (8%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ-MQFC 344
           ++  Y+ +G    A   F +++ ++V     TW+++I+ YA+ GH H A+D F + +   
Sbjct: 81  LINRYAFLGDIPHARLTFDQIQTKDV----YTWNSMISAYARIGHFHAAVDCFNEFLSTS 136

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
            L+ +  T   ++  C   G L  G++ HC  +K           D+ +  + I  Y++ 
Sbjct: 137 FLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFEC------DVYIAASFIHFYSRF 187

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             V +A  +FD +    RD+ TW  MI  +  NG   +AL +F +M  + K V  ++ T+
Sbjct: 188 GFVSLACNLFDNMMI--RDIGTWNAMISGFYLNGKVAEALEVFDEM--RFKSVSMDSVTI 243

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           S  L  C +L  +  G  IH Y ++   E  + FV N LI+MY++ G++ +A  +F+ +K
Sbjct: 244 SSLLPICVQLDDIISGVLIHVYAIKLGLEFDL-FVCNALINMYAKFGELRSAETIFNQMK 302

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            R++VSW SL+  +  +     A   +++M   G+ PD +T + L    +  G       
Sbjct: 303 VRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG------N 356

Query: 585 YFDSMSKEFGISARAEHY------ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +  S S    ++ R            I+D+  +   +D A ++ EG+P++   I W +L+
Sbjct: 357 FLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDV-ISWNSLI 415

Query: 639 NG 640
            G
Sbjct: 416 TG 417



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           +   +Q+HA ++ +     I F++  LI+ Y+  GDI  AR+ FD ++ ++V +W S+++
Sbjct: 56  VHLAKQLHALLVVSGKTQSI-FLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMIS 114

Query: 537 GYGMHGLGDKAHWAFDQ-MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            Y   G    A   F++ +    L  D  TF  ++ AC   G +D G K    +  + G 
Sbjct: 115 AYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRK-VHCLVLKLGF 170

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
                  A  +    R   +  A  L + M +      W A+++G  ++  V
Sbjct: 171 ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIG-TWNAMISGFYLNGKV 221


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/757 (37%), Positives = 416/757 (54%), Gaps = 47/757 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSSRCGSSVHA 159
           WN+ I    R    + A   F  M         +T   V  AC   G +   R G  +H 
Sbjct: 162 WNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHG 221

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G D   F  NALMAMYA+   +  ++ LF+        D+VSWNT++++++QS  
Sbjct: 222 YSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDR---DMVSWNTMISSFSQSDR 277

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L  F  M  +  V+ DGV++ + L AC+ L     GK+      A  +     +++
Sbjct: 278 FSEALAFFRLMVLE-GVELDGVTIASVLPACSHLERLDVGKEI----HAYVLRNNDLIEN 332

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               +A+V  Y      E    +F  +    ++L    W+A+I+GYA+ G   +AL +F 
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIEL----WNAMISGYARNGLDEKALILFI 388

Query: 340 QM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +M +  GL PN  T+ S++  C    A    +  H Y +K          +D  V NAL+
Sbjct: 389 EMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKL------GFKEDRYVQNALM 442

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV- 457
           DMY++   +D++  +FD++  + RD  +W  MI  Y  +G  ++AL L  +M + +    
Sbjct: 443 DMYSRMGKMDISETIFDSM--EVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKD 500

Query: 458 --------------KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
                         KPNA TL   L  CA LAA+  G++IHAY +RN     I  V + L
Sbjct: 501 VKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDIT-VGSAL 559

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG----- 558
           +DMY++ G ++ +R VF+ +  +NV++W  L+   GMHG G++A   F  M  E      
Sbjct: 560 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 619

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
             P+ VTF+ +  ACSHSG++ +GL  F  M  + G+   ++HYAC+VDLLGRA +L+EA
Sbjct: 620 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 679

Query: 619 VELIEGMPMEPTPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
            EL+  MP E   +  W +LL  CRIH NVELGE+AA  LL LE      Y LLSNIY++
Sbjct: 680 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS 739

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
           AG W     +R  M+  GVKK PGCSW++ ++    F  GD +HPQS++++  L  L ++
Sbjct: 740 AGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEK 799

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           ++  GYVP TS  LH+VD++EK +LL  HSEKLA+A+GIL T PGT IR+ KNLR+C DC
Sbjct: 800 MRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDC 859

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+A  FIS I+  EII+RD  RFHHFKEG+C+C  YW
Sbjct: 860 HAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 173/616 (28%), Positives = 288/616 (46%), Gaps = 46/616 (7%)

Query: 67  HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR----L 122
           H PPS       S   P+ A  L  +  P P S     A    A+R R   N FR     
Sbjct: 21  HSPPSLQTQPPPSIQKPT-ASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAIST 79

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYA 181
           +++M   G  PD + FP VLKA   L   + G  +HA     G+  S+V V N L+ MY 
Sbjct: 80  YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           +C  +    ++FD +      D VSWN+ +AA  +    E  L  F  M  +  ++    
Sbjct: 140 KCGGIGDVCKVFDRITDR---DQVSWNSFIAALCRFEKWEQALEAFRAMQME-NMELSSF 195

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           +LV+   AC++LG    G + G       +  R+  +   + NA++  Y+++G  +D+ A
Sbjct: 196 TLVSVALACSNLGVM-HGLRLGKQLHGYSL--RVGDQKTFTNNALMAMYAKLGRVDDSKA 252

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           LF+      V  ++V+W+ +I+ ++Q     EAL  FR M   G+E + VT+ S+L  C+
Sbjct: 253 LFESF----VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACS 308

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +  L +GKE H Y ++    ++ S      V +AL+DMY  C+ V+  R +FD I    
Sbjct: 309 HLERLDVGKEIHAYVLRNNDLIENS-----FVGSALVDMYCNCRQVESGRRVFDHIL--G 361

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           R +  W  MI  Y++NG    AL LF +M +   L+ PN  T++  + AC    A     
Sbjct: 362 RRIELWNAMISGYARNGLDEKALILFIEMIKVAGLL-PNTTTMASVMPACVHCEAFSNKE 420

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            IH Y ++  ++    +V N L+DMYSR G +D +  +FD+++ R+ VSW +++TGY + 
Sbjct: 421 SIHGYAVKLGFKE-DRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLS 479

Query: 542 GLGDKAHWAFDQMRK-----------------EGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           G    A     +M++                     P+ +T + +L  C+    + +G K
Sbjct: 480 GRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKG-K 538

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
              + +    +++     + +VD+  +   L+ +  +   MP     I W  L+  C +H
Sbjct: 539 EIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMH 597

Query: 645 ANVELG-ELAANRLLE 659
              E   EL  N + E
Sbjct: 598 GKGEEALELFKNMVAE 613


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/741 (38%), Positives = 417/741 (56%), Gaps = 35/741 (4%)

Query: 100  VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG--SSV 157
            +F W  +I    +      AF LFLQM R G  P+  T+  +L A     +S       V
Sbjct: 386  IFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVV 445

Query: 158  HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD--IVSWNTIVAAYA 215
            H     +GF S++ + NAL+ MYA+C ++  AR +FD     G+CD  ++SWN ++   A
Sbjct: 446  HKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFD-----GMCDRDVISWNAMMGGLA 500

Query: 216  QSGDAEGGLMLFARMT--GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
            Q+G       +F +M   G V      +SL+N   +  +L  W       + E  K   E
Sbjct: 501  QNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDAL-EW-------VNEVHKHAVE 552

Query: 274  RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
               + D    +A +  Y R GS +DA  LF K+   +V     TW+A+I G AQ+  G E
Sbjct: 553  TGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHV----TTWNAMIGGAAQQRCGRE 608

Query: 334  ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
            AL +F QMQ  G  P+  T +++LS      AL   KE H +     L        DL V
Sbjct: 609  ALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLV-------DLRV 661

Query: 394  INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             NAL+  Y+KC +V  A+ +FD +  +N  V TWT+MIG  +Q+G  +DA + F QM ++
Sbjct: 662  GNALVHTYSKCGNVKYAKQVFDDMVERN--VTTWTMMIGGLAQHGCGHDAFSHFLQMLRE 719

Query: 454  DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
               + P+A T    L ACA   AL + +++H + +       +  V N L+ MY++ G I
Sbjct: 720  G--IVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLR-VGNALVHMYAKCGSI 776

Query: 514  DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            D AR VFD++ +R+V SWT ++ G   HG G +A   F +M+ EG  P+G +++ +L AC
Sbjct: 777  DDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTAC 836

Query: 574  SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
            SH+G+VD+G + F SM++++GI    EHY C+VDLLGRA  L+EA   I  MP+EP    
Sbjct: 837  SHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAP 896

Query: 634  WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
            W ALL  C  + N+E+ E AA   L+L+ +   +Y LLSNIYA  G+W+    +RS+M+ 
Sbjct: 897  WGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQR 956

Query: 694  TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             G++K PG SW++      +F VGD +HP+S++IY  L  L++R+KA GYVP T   L +
Sbjct: 957  KGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRN 1016

Query: 754  VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
             D E K   L  HSEKLA+ YG++ T    PIR+ KNLR+C DCH+A  FIS I   EI+
Sbjct: 1017 TDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIV 1076

Query: 814  LRDSNRFHHFKEGSCTCKGYW 834
             RD+ RFHHFK+G C+C  YW
Sbjct: 1077 ARDAKRFHHFKDGVCSCGDYW 1097



 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 175/542 (32%), Positives = 278/542 (51%), Gaps = 37/542 (6%)

Query: 127 MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL 186
           +++G   D +++  +L+ C +         VH  I  SG + N++V N L+ +Y RC  L
Sbjct: 110 VQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRL 169

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
             ARQ+FD++ +    +I  W T++  YA+ G AE  + ++ +M  +   Q + ++ ++ 
Sbjct: 170 QCARQVFDKLLKK---NIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG-QPNEITYLSI 225

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L AC        GK+         + +     DV    A+V  Y + GS EDA  +F KM
Sbjct: 226 LKACCCPVNLKWGKKI-----HAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM 280

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
               V+ NV++W+ +I G A  G G EA  +F QMQ  G  PN  T VS+L+  AS GAL
Sbjct: 281 ----VERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
              KE H + +   L++      DL V NAL+ MYAK  S+D ARV+FD +    RD+ +
Sbjct: 337 EWVKEVHSHAVNAGLAL------DLRVGNALVHMYAKSGSIDDARVVFDGMTE--RDIFS 388

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL--MACARLAALRFGRQIH 484
           WTVMIG  +Q+G   +A +LF QM +   L  PN  T    L   A A  +AL + + +H
Sbjct: 389 WTVMIGGLAQHGRGQEAFSLFLQMQRNGCL--PNLTTYLSILNASAIASTSALEWVKVVH 446

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
            +     +   +  + N LI MY++ G ID AR+VFD +  R+V+SW ++M G   +G G
Sbjct: 447 KHAEEAGFISDLR-IGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCG 505

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK---EFGISARAEH 601
            +A   F QM++EGL PD  T+L LL   +  G  D  L++ + + K   E G+ +    
Sbjct: 506 HEAFTVFLQMQQEGLVPDSTTYLSLL---NTHGSTD-ALEWVNEVHKHAVETGLISDFRV 561

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
            +  + +  R   +D+A  L + + +      W A++ G    A    G  A +  L+++
Sbjct: 562 GSAFIHMYIRCGSIDDARLLFDKLSVRHVT-TWNAMIGGA---AQQRCGREALSLFLQMQ 617

Query: 662 SE 663
            E
Sbjct: 618 RE 619



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 249/481 (51%), Gaps = 36/481 (7%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +++ W  +I         ++A R++ +M +    P+E T+  +LKAC    + + G  +H
Sbjct: 183 NIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIH 242

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A I  SGF S+V V  AL+ MY +C ++  A+ +FD+M +    +++SW  ++   A  G
Sbjct: 243 AHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVER---NVISWTVMIGGLAHYG 299

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-- 276
             +    LF +M  +  +  +  + V+ L+A AS G          +E  K+V       
Sbjct: 300 RGQEAFHLFLQMQREGFIP-NSYTYVSILNANASAGA---------LEWVKEVHSHAVNA 349

Query: 277 --VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               D+   NA+V  Y++ GS +DA  +F  M +     ++ +W+ +I G AQ G G EA
Sbjct: 350 GLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER----DIFSWTVMIGGLAQHGRGQEA 405

Query: 335 LDVFRQMQFCGLEPNVVTLVSLL--SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
             +F QMQ  G  PN+ T +S+L  S  AS  AL   K  H +      + +     DL 
Sbjct: 406 FSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH------AEEAGFISDLR 459

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           + NALI MYAKC S+D AR++FD +   +RDV +W  M+G  +QNG  ++A  +F QM Q
Sbjct: 460 IGNALIHMYAKCGSIDDARLVFDGMC--DRDVISWNAMMGGLAQNGCGHEAFTVFLQM-Q 516

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF-VANCLIDMYSRSG 511
           Q+ LV P++ T    L       AL +  ++H + +     ++  F V +  I MY R G
Sbjct: 517 QEGLV-PDSTTYLSLLNTHGSTDALEWVNEVHKHAVETG--LISDFRVGSAFIHMYIRCG 573

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ID AR++FD L  R+V +W +++ G      G +A   F QM++EG  PD  TF+ +L 
Sbjct: 574 SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633

Query: 572 A 572
           A
Sbjct: 634 A 634



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 123/281 (43%), Gaps = 37/281 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  +I    +     +AF  FLQM+R G  PD  T+  +L AC    +      VH
Sbjct: 689 NVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVH 748

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
               S+G  S++ V NAL+ MYA+C ++  AR +FD+M +    D+ SW  ++   AQ G
Sbjct: 749 NHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVER---DVFSWTVMIGGLAQHG 805

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
                L  F +M  +   + +G S V  L+AC+  G    G+                  
Sbjct: 806 RGLEALDFFVKMKSE-GFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEH 864

Query: 261 ---------QCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDA-FALFKKMRQE 309
                    + G++EEA+     M ++ D   W A++      G+ E A FA  ++++ +
Sbjct: 865 YTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLK 924

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL--EP 348
               +  T+  +   YA  G   + L V   MQ  G+  EP
Sbjct: 925 --PKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEP 963


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/796 (35%), Positives = 444/796 (55%), Gaps = 31/796 (3%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPS--HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LL    +L+Q+  I  Q+I+  + +   S   L   +    A +    L  ++S     +
Sbjct: 20  LLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP--DL 77

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           F +N LIR      LP ++  L+  + ++    PD +T+ F + A   L   R G  +HA
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G  SN+FV +A++ +Y +      AR++FD M +    D V WNT+++ ++++  
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPER---DTVLWNTMISGFSRNSY 194

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            E  + +F  M  DV +  D  +L   L+A A L  +  G     +   K +       D
Sbjct: 195 FEDSIRVFVDML-DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH-----SD 248

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V     +++ YS+ G       LF ++ Q ++    ++++A+I+GY        A+ +FR
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDL----ISYNAMISGYTFNHETESAVTLFR 304

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           ++   G   N  TLV L+        L L +     ++K  + +  S      V  AL  
Sbjct: 305 ELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS------VSTALTT 358

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +Y +   V  AR +FD  +P+ + +A+W  MI  Y+QNG  + A++LF +M  Q   + P
Sbjct: 359 VYCRLNEVQFARQLFDE-SPE-KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ---LSP 413

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N  T++  L ACA+L AL  G+ +H  +   + E  + +V+  L+DMY++ G I  AR +
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV-YVSTALVDMYAKCGSIVEARQL 472

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +  +NVV+W +++TGYG+HG G +A   F +M + G+ P GVTFL +LYACSHSG+V
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLV 532

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +G + F SM+  +G    +EHYAC+VD+LGRA +L  A+E IE MP+EP P +W ALL 
Sbjct: 533 SEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLG 592

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            C IH N E+  +A+ RL +L+ E  G Y LLSNIY+    +   A +R ++K   + K 
Sbjct: 593 ACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKT 652

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT-SFALHDVDDEE 758
           PGC+ ++  +    F  GDR+HPQ+  I+E+L  L  +++  GY  +T + ALHDV+DEE
Sbjct: 653 PGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEE 712

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  ++  HSEKLA+A+G+++T PGT IRI KNLR+C DCH+A  FIS I    I++RD+N
Sbjct: 713 KELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDAN 772

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK G C+C  YW
Sbjct: 773 RFHHFKNGICSCGDYW 788


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/733 (37%), Positives = 419/733 (57%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNAL+    +L       +LF +M        ++T   VLK C    S R G  +HA+  
Sbjct: 19  WNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALAL 78

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SG + + F+  +L+ MY++C T+  A ++F ++  P   D+V+W+ ++    Q G  + 
Sbjct: 79  RSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNP---DVVAWSAMITGLDQQGHGQE 135

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
              LF  M      + +  +L + +S   ++G    G+   G +   K  FE     D +
Sbjct: 136 AAELFHLMRRK-GARPNQFTLSSLVSTATNMGDLRYGQSIHGCI--CKYGFE----SDNL 188

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             N ++  Y +    ED   +F+ M   ++    V+W+A+++G+           +F QM
Sbjct: 189 VSNPLIMMYMKSRCVEDGNKVFEAMTNPDL----VSWNALLSGFYDSQTCGRGPRIFYQM 244

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G +PN+ T +S+L  C+S+     GK+ H + IK       S  DD  V  AL+DMY
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN------SSDDDDFVGTALVDMY 298

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK + ++ A V FD +   NRD+ +WTV+I  Y+Q   A  A+  F QM  Q + +KPN 
Sbjct: 299 AKARCLEDAGVAFDRLV--NRDIFSWTVIISGYAQTDQAEKAVKYFRQM--QREGIKPNE 354

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           +TL+  L  C+ +A L  GRQ+HA  ++  +   I FV + L+D+Y + G ++ A  +F 
Sbjct: 355 YTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDI-FVGSALVDLYGKCGCMEHAEAIFK 413

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            L  R++VSW ++++GY  HG G+KA  AF  M  EG+ PD  TF+ +L ACS  G+V++
Sbjct: 414 GLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEE 473

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G K FDSMSK +GI+   EHYAC+VD+LGRA + +E    IE M + P  +IW  +L  C
Sbjct: 474 GKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGAC 533

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           ++H NV+ GE AA +L E+E   D SY LLSNI+A+ GRW DV  IR+LM   G+KK PG
Sbjct: 534 KLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPG 593

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSWV+       F   D +HP+ ++IY  L  L Q + ++GYVP+T   LH+V ++EK +
Sbjct: 594 CSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKME 653

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L+ HSE+LAL++ +L+T    PIRI KNLRIC DCH  +  IS I N EI++RD  RFH
Sbjct: 654 HLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFH 713

Query: 822 HFKEGSCTCKGYW 834
           HFK G+C+C+  W
Sbjct: 714 HFKRGTCSCQDRW 726



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 180/363 (49%), Gaps = 22/363 (6%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N V+W+A++ GYAQ G G + L +F +M+ C  + +  TL ++L GCA+ G+L  GK  H
Sbjct: 15  NGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLH 74

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              ++      G   D+ +   +L+DMY+KC +V  A  +F  I  +N DV  W+ MI  
Sbjct: 75  ALALR-----SGCEIDEFLGC-SLVDMYSKCGTVYDALKVFTKI--RNPDVVAWSAMITG 126

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
             Q G   +A  LF  M  + K  +PN FTLS  +     +  LR+G+ IH  + +  +E
Sbjct: 127 LDQQGHGQEAAELFHLM--RRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE 184

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
                V+N LI MY +S  ++    VF+ +   ++VSW +L++G+       +    F Q
Sbjct: 185 S-DNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY--ACIVDLLGR 611
           M  EG  P+  TF+ +L +CS     + G +    + K    S+  + +    +VD+  +
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN---SSDDDDFVGTALVDMYAK 300

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN--RLLELESEKDGSYT 669
           A  L++A    + + +      W  +++G   +A  +  E A    R ++ E  K   YT
Sbjct: 301 ARCLEDAGVAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQREGIKPNEYT 356

Query: 670 LLS 672
           L S
Sbjct: 357 LAS 359



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 136/314 (43%), Gaps = 43/314 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +F W  +I    +    + A + F QM R G  P+EYT    L  C  + +   G  +HA
Sbjct: 319 IFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHA 378

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           V   +G   ++FV +AL+ +Y +C  + +A  +F  +      DIVSWNTI++ Y+Q G 
Sbjct: 379 VAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR---DIVSWNTIISGYSQHGQ 435

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV-- 277
            E  L  F RM     +  D  + +  LSAC+ +         G++EE KK F+ M    
Sbjct: 436 GEKALEAF-RMMLSEGIMPDEATFIGVLSACSFM---------GLVEEGKKRFDSMSKIY 485

Query: 278 ---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
                +  +  MV    R G F +     ++M   N+    + W  V+   A + HG+  
Sbjct: 486 GINPSIEHYACMVDILGRAGKFNEVKIFIEEM---NLTPYSLIWETVLG--ACKLHGNVD 540

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGC-ASVG---------ALL----LGKETHCY----- 375
                  +   +EP + +   LLS   AS G         AL+    + KE  C      
Sbjct: 541 FGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVD 600

Query: 376 -TIKRVLSVDGSHP 388
             +   LS DGSHP
Sbjct: 601 GQVHVFLSQDGSHP 614


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/764 (35%), Positives = 435/764 (56%), Gaps = 28/764 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LIA Y        A  L   I         WN++I   V       A  LF +M   G  
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVA 245

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            + YTF   L+   +    + G  +H     S   ++V+V NAL+AMYA+C  +  A ++
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERV 305

Query: 193 FDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           F  M    +C D VSWNT+++   Q+      L  F  M    + + D VS++N ++A  
Sbjct: 306 FASM----LCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ-KPDQVSVLNLIAASG 360

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
             G    GK+         +   M++      N ++  Y++    +     F+ M ++++
Sbjct: 361 RSGNLLNGKEVHAYAIRNGLDSNMQIG-----NTLIDMYAKCCCVKHMGYAFECMHEKDL 415

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               ++W+ +IAGYAQ     EA+++FR++Q  G++ + + + S+L  C+ + +    +E
Sbjct: 416 ----ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y  KR L+       D+M+ NA++++Y +    D AR  F++I  +++D+ +WT MI
Sbjct: 472 IHGYVFKRDLA-------DIMLQNAIVNVYGEVGHRDYARRAFESI--RSKDIVSWTSMI 522

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
                NG   +AL LF  + Q +  ++P++  +  AL A A L++L+ G++IH +++R  
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTN--IQPDSIAIISALSATANLSSLKKGKEIHGFLIRKG 580

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           + +  P +A+ L+DMY+  G ++ +R +F ++KQR+++ WTS++   GMHG G++A   F
Sbjct: 581 FFLEGP-IASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALF 639

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M  E + PD +TFL LLYACSHSG++ +G ++F+ M   + +    EHYAC+VDLL R
Sbjct: 640 KKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSR 699

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           +N L+EA + +  MP++P+  +W ALL  C IH+N ELGELAA  LL+ +++  G Y L+
Sbjct: 700 SNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALI 759

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNI+A  GRW DV  +R  MK  G+KK PGCSW++      TF   D++HPQ+  IY  L
Sbjct: 760 SNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKL 819

Query: 732 AGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           A   + + K  GY+ QT F  H+V +EEK  +L+ HSE+LAL YG+L T  GT IRITKN
Sbjct: 820 AQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKN 879

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LRIC DCH+     S +    +++RD+NRFHHF+ G C+C  +W
Sbjct: 880 LRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 181/635 (28%), Positives = 306/635 (48%), Gaps = 34/635 (5%)

Query: 18  TLNHLFTNIKLFSV----TTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVPP 70
           TLN  F ++ L S     T +      SLLL  C   K+L Q   +H +++  +L+    
Sbjct: 23  TLNPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFLA 82

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  Y    +   A+ +   ++    ++F WNA++   V       A  L+ +M   G
Sbjct: 83  TKLLHMYEKCGSLKDAVKVFDEMTER--TIFTWNAMMGAFVSSGKYLEAIELYKEMRVLG 140

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              D  TFP VLKACG L  SR G+ +H V    GF   VFVCNAL+AMY +C  L  AR
Sbjct: 141 VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGAR 200

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD +      D VSWN+I++A+   G     L LF RM  +V V  +  + V AL   
Sbjct: 201 VLFDGIMMEKE-DTVSWNSIISAHVTEGKCLEALSLFRRMQ-EVGVASNTYTFVAALQGV 258

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                   G     M       +     DV   NA++  Y++ G  EDA  +F  M    
Sbjct: 259 EDPSFVKLG-----MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASM---- 309

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           +  + V+W+ +++G  Q     +AL+ FR MQ    +P+ V++++L++     G LL GK
Sbjct: 310 LCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGK 369

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           E H Y I+  L        ++ + N LIDMYAKC  V      F+ +  K  D+ +WT +
Sbjct: 370 EVHAYAIRNGLD------SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEK--DLISWTTI 421

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  Y+QN    +A+ LF ++  Q K +  +   +   L AC+ L +  F R+IH YV + 
Sbjct: 422 IAGYAQNECHLEAINLFRKV--QVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR 479

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
               ++  + N ++++Y   G  D AR  F++++ +++VSWTS++T    +GL  +A   
Sbjct: 480 DLADIM--LQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F  +++  + PD +  +  L A ++   + +G +    + ++ G        + +VD+  
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEGPIASSLVDMYA 596

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
               ++ + ++   +      I+W +++N   +H 
Sbjct: 597 CCGTVENSRKMFHSVKQRDL-ILWTSMINANGMHG 630


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/708 (38%), Positives = 399/708 (56%), Gaps = 48/708 (6%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARC--DTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +H+ I  +G  +  F  + L+   A      LSYA  LF  +  P   + V WN ++   
Sbjct: 47  IHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP---NHVIWNHMIRGL 103

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------------ 262
           + S      L  +  M      + +  +  +   +C  +     GKQ             
Sbjct: 104 SSSESPFLALEYYVHMISS-GTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHN 162

Query: 263 --------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                         G +  A+ VF++  ++D VS+ A++TGY+  G  ++A  LF ++  
Sbjct: 163 AFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPV 222

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA-LL 367
            +V    V+W+A+I+GYAQ G   EA+  F +M+   + PNV T++S+LS CA  G+ L 
Sbjct: 223 RDV----VSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQ 278

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG     +   R L        ++ ++N LIDMY KC  ++ A  +F+ I  KN  V +W
Sbjct: 279 LGNWVRSWIEDRGLG------SNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKN--VVSW 330

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
            VMIG Y+      +AL LF +M Q +  + PN  T    L ACA L AL  G+ +HAYV
Sbjct: 331 NVMIGGYTHMSCYKEALGLFRRMMQSN--IDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 488 LRNQYEMLIPFVA-NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
            +N   M         LIDMY++ GD+  A+ +FD +  +++ +W ++++G+ MHG  D 
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDT 448

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F +M  EG  PD +TF+ +L AC H+G++  G +YF SM +++ +S +  HY C++
Sbjct: 449 ALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMI 508

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DL GRA   DEA  L++ M M+P   IW +LL  CRIH  +EL E  A  L ELE E   
Sbjct: 509 DLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPS 568

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
           +Y LLSNIYA AGRW+DVA+IR+ +    +KK PGCS ++       F VGD+ HPQS +
Sbjct: 569 AYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNE 628

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           IY++L  +  R++  G+VP TS  L+D+D+E K  +L  HSEKLA+A+G+++T PGT IR
Sbjct: 629 IYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIR 688

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I KNLR+CG+CHSA   IS I N EII RD NRFHHFK+GSC+CK YW
Sbjct: 689 IMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 170/560 (30%), Positives = 263/560 (46%), Gaps = 108/560 (19%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIA--AYVSHNAPSPALSLLQRISPSPF 98
           LL  CK+L  +  IH QII   L  TH   S LI   A   H   S ALSL + I  +P 
Sbjct: 34  LLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR-NPN 92

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
            V W N +IR       P  A   ++ M+  G  P+EYTFP + K+C ++  +  G  VH
Sbjct: 93  HVIW-NHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD------------------------ 194
           A +   G + N FV  +L+ MYA+   L  AR +FD                        
Sbjct: 152 AHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLD 211

Query: 195 ---EMF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
              E+F +  + D+VSWN +++ YAQSG  E  +  F  M    KV  +  ++++ LSAC
Sbjct: 212 EARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR-RAKVTPNVSTMLSVLSAC 270

Query: 251 A------SLGTWSRG---------------------KQCGMMEEAKKVFERMKVKDVVSW 283
           A       LG W R                       +CG +EEA  +FE+++ K+VVSW
Sbjct: 271 AQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSW 330

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N M+ GY+ +  +++A  LF++M Q N+                                
Sbjct: 331 NVMIGGYTHMSCYKEALGLFRRMMQSNI-------------------------------- 358

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
              +PN VT +S+L  CA++GAL LGK  H Y  K + S+  +    + +  +LIDMYAK
Sbjct: 359 ---DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNT----VALWTSLIDMYAK 411

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  + VA+ +FD +  K+  +ATW  MI  ++ +G  + AL LF +M  +  +  P+  T
Sbjct: 412 CGDLAVAKRIFDCMNTKS--LATWNAMISGFAMHGHTDTALGLFSRMTSEGFV--PDDIT 467

Query: 464 LSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
               L AC     L  GR+  + ++++ +    +P    C+ID++ R+G  D A  +  N
Sbjct: 468 FVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYG-CMIDLFGRAGLFDEAETLVKN 526

Query: 523 LKQR-NVVSWTSLMTGYGMH 541
           ++ + +   W SL+    +H
Sbjct: 527 MEMKPDGAIWCSLLGACRIH 546


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/762 (37%), Positives = 448/762 (58%), Gaps = 53/762 (6%)

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           I+AY+       ALS+   +     S   +NA+I   +     D A ++F +M      P
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRR--STVTYNAMISGYLSNNKFDCARKVFEKM------P 118

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D     + +   G + +     S    + +   + +V   NA+++ +A+   +  AR++F
Sbjct: 119 DRDLISWNVMLSGYVKNGNL--SAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D+M    + + +SWN +++AY Q+G  E    LF     D K+  + VS  N L     +
Sbjct: 177 DQML---VKNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDWEIVSW-NCL-----M 222

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
           G + R K+   +++A+ +F+RM V+D +SWN M+TGY++ G   +A  LF+++   +V  
Sbjct: 223 GGYVRKKR---LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV-- 277

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
               W+A+++G+ Q G   EA  +F +M     E N V+  ++++G      +   +E  
Sbjct: 278 --FAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELF 331

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
                R  S            N ++  YA+C ++D A+++FD +    RD  +W  MI  
Sbjct: 332 DQMPSRNTSS----------WNTMVTGYAQCGNIDQAKILFDEMP--QRDCISWAAMISG 379

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+Q+G + +AL LF +M +   ++  +A  L+CAL +CA +AAL  G+Q+H  +++  ++
Sbjct: 380 YAQSGQSEEALHLFIKMKRDGGILNRSA--LACALSSCAEIAALELGKQLHGRLVKAGFQ 437

Query: 494 MLIPFVA-NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
               ++A N L+ MY + G I+ A  VF+++ ++++VSW +++ GY  HG G +A   F+
Sbjct: 438 --TGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFE 495

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M K  + PD VT + +L ACSH+G+VD+G++YF+SM + +GI+A A+HY C++DLLGRA
Sbjct: 496 SM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRA 554

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            RLDEA+ L++ MP  P    W ALL   RIH + ELGE AA ++ E+E +  G Y LLS
Sbjct: 555 GRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLS 614

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N+YA +GRW++V  +RS M+  GVKK PG SWV+ +  T  F VGD +HP++++IY  L 
Sbjct: 615 NLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLE 674

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   +K  G+V  T   LHDV++EEK  +L  HSEKLA+A+GIL+  PG PIR+ KNLR
Sbjct: 675 ELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLR 734

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +C DCH+AI  IS I   +II+RDSNRFHHF EGSC+C  YW
Sbjct: 735 VCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 158/551 (28%), Positives = 255/551 (46%), Gaps = 78/551 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +++ YV +   S A +L  ++      V  WNA++    +    + A ++F QM+ +   
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEK--DVVSWNAMLSGFAQNGFVEEARKIFDQMLVK--- 182

Query: 133 PDEYTFPFVLKAC---GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
            +E ++  +L A    G +  +R        +  S  D  +   N LM  Y R   L  A
Sbjct: 183 -NEISWNGLLSAYVQNGRIEDAR-------RLFDSKMDWEIVSWNCLMGGYVRKKRLDDA 234

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDV-----KVQG----- 238
           R LFD M    + D +SWN ++  YAQ+G       LF  +   DV      V G     
Sbjct: 235 RSLFDRM---PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 239 --DGVSLV-------NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
             D  + +       N +S  A +  + + +Q   +E+A+++F++M  ++  SWN MVTG
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQ---IEKARELFDQMPSRNTSSWNTMVTG 348

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G+ + A  LF +M Q     + ++W+A+I+GYAQ G   EAL +F +M+  G   N
Sbjct: 349 YAQCGNIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
              L   LS CA + AL LGK+ H   +K             +  NAL+ MY KC S++ 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVK------AGFQTGYIAGNALLAMYGKCGSIEE 458

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A  +F+ I  K  D+ +W  MI  Y+++G   +ALALF  M      +KP+  TL   L 
Sbjct: 459 AFDVFEDITEK--DIVSWNTMIAGYARHGFGKEALALFESM---KMTIKPDDVTLVGVLS 513

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNV 528
           AC+    +  G +    + +N           C+ID+  R+G +D A  +  ++    + 
Sbjct: 514 ACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDA 573

Query: 529 VSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVL---LYACS-------- 574
            +W +L+    +HG   LG+KA     +M      PD     VL   LYA S        
Sbjct: 574 ATWGALLGASRIHGDTELGEKAAEKVFEME-----PDNSGMYVLLSNLYAASGRWREVRE 628

Query: 575 -HSGMVDQGLK 584
             S M D+G+K
Sbjct: 629 MRSKMRDKGVK 639



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 213/463 (46%), Gaps = 56/463 (12%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           DIV WN  ++AY + G  E  L +F  M     V        NA+ +    G  S  K  
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVT------YNAMIS----GYLSNNK-- 106

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
              + A+KVFE+M  +D++SWN M++GY + G+   A ALF +M ++    +VV+W+A++
Sbjct: 107 --FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK----DVVSWNAML 160

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G+AQ G   EA  +F QM    L  N ++   LLS     G +           +R+  
Sbjct: 161 SGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRI--------EDARRLF- 207

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
            D     +++  N L+  Y + K +D AR +FD +    RD  +W +MI  Y+QNG  ++
Sbjct: 208 -DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV--RDKISWNIMITGYAQNGLLSE 264

Query: 443 ALALFPQMFQQDKLVKP---NAFTLSCALMACARL-------AALRFGRQIHAYVLRNQY 492
           A  LF ++  +D        + F  +  L    R+         + +   I  YV   Q 
Sbjct: 265 ARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 324

Query: 493 EMLIPFVA----------NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           E                 N ++  Y++ G+ID A+++FD + QR+ +SW ++++GY   G
Sbjct: 325 EKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSG 384

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
             ++A   F +M+++G   +       L +C+    ++ G +    + K  G        
Sbjct: 385 QSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAG 443

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
             ++ + G+   ++EA ++ E +  E   + W  ++ G   H 
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG 485



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 185/419 (44%), Gaps = 79/419 (18%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V WN  ++ Y R G  E A ++F  MR+     + VT++A+I+GY        A  VF
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCARKVF 114

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVINAL 397
            +M                                              PD DL+  N +
Sbjct: 115 EKM----------------------------------------------PDRDLISWNVM 128

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +  Y K  ++  AR +F+ +  K  DV +W  M+  ++QNG   +A  +F QM     LV
Sbjct: 129 LSGYVKNGNLSAARALFNQMPEK--DVVSWNAMLSGFAQNGFVEEARKIFDQM-----LV 181

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           K N  + +  L A  +   +   R++  +  +  +E++     NCL+  Y R   +D AR
Sbjct: 182 K-NEISWNGLLSAYVQNGRIEDARRL--FDSKMDWEIV---SWNCLMGGYVRKKRLDDAR 235

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD +  R+ +SW  ++TGY  +GL  +A   F+++       D   +  ++     +G
Sbjct: 236 SLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP----IRDVFAWTAMVSGFVQNG 291

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           M+D+  + F+ M ++  +S     +  ++    ++ ++++A EL + MP   T   W  +
Sbjct: 292 MLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTS-SWNTM 345

Query: 638 LNGCRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           + G     N++  ++    L +   ++D  S+  + + YA +G+ ++   +   MK  G
Sbjct: 346 VTGYAQCGNIDQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/762 (37%), Positives = 447/762 (58%), Gaps = 53/762 (6%)

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           I+AY+       ALS+   +     S   +NA+I   +     D A ++F +M      P
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRR--STVTYNAMISGYLSNNKFDCARKVFEKM------P 118

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D     + +   G + +     S    + +   + +V   NA+++ +A+   +  AR++F
Sbjct: 119 DRDLISWNVMLSGYVKNGNL--SAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D+M    + + +SWN +++AY Q+G  E    LF     D K+  + VS  N L     +
Sbjct: 177 DQML---VKNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDWEIVSW-NCL-----M 222

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
           G + R K+   +++A+ +F+RM V+D +SWN M+TGY++ G   +A  LF+++   +V  
Sbjct: 223 GGYVRKKR---LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV-- 277

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
               W+A+++G+ Q G   EA  +F +M     E N V+  ++++G      +   +E  
Sbjct: 278 --FAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELF 331

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
                R  S            N ++  YA+C ++D A+++FD +    RD  +W  MI  
Sbjct: 332 DQMPSRNTSS----------WNTMVTGYAQCGNIDQAKILFDEMP--QRDCISWAAMISG 379

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+Q+G + +AL LF +M +   ++  +A  L+CAL +CA +AAL  G+Q+H  +++  ++
Sbjct: 380 YAQSGQSEEALHLFIKMKRDGGILNRSA--LACALSSCAEIAALELGKQLHGRLVKAGFQ 437

Query: 494 MLIPFVA-NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
               ++A N L+ MY + G I+ A  VF+++ ++++VSW +++ GY  HG G +A   F+
Sbjct: 438 --TGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFE 495

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M K  + PD VT + +L ACSH+G VD+G++YF+SM + +GI+A A+HY C++DLLGRA
Sbjct: 496 SM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRA 554

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            RLDEA+ L++ MP  P    W ALL   RIH + ELGE AA ++ E+E +  G Y LLS
Sbjct: 555 GRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLS 614

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N+YA +GRW++V  +RS M+  GVKK PG SWV+ +  T  F VGD +HP++++IY  L 
Sbjct: 615 NLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLE 674

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   +K  G+V  T   LHDV++EEK  +L  HSEKLA+A+GIL+  PG PIR+ KNLR
Sbjct: 675 ELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLR 734

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +C DCH+AI  IS I   +II+RDSNRFHHF EGSC+C  YW
Sbjct: 735 VCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 158/551 (28%), Positives = 255/551 (46%), Gaps = 78/551 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +++ YV +   S A +L  ++      V  WNA++    +    + A ++F QM+ +   
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEK--DVVSWNAMLSGFAQNGFVEEARKIFDQMLVK--- 182

Query: 133 PDEYTFPFVLKAC---GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
            +E ++  +L A    G +  +R        +  S  D  +   N LM  Y R   L  A
Sbjct: 183 -NEISWNGLLSAYVQNGRIEDAR-------RLFDSKMDWEIVSWNCLMGGYVRKKRLDDA 234

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDV-----KVQG----- 238
           R LFD M    + D +SWN ++  YAQ+G       LF  +   DV      V G     
Sbjct: 235 RSLFDRM---PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 239 --DGVSLV-------NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
             D  + +       N +S  A +  + + +Q   +E+A+++F++M  ++  SWN MVTG
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQ---IEKARELFDQMPSRNTSSWNTMVTG 348

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G+ + A  LF +M Q     + ++W+A+I+GYAQ G   EAL +F +M+  G   N
Sbjct: 349 YAQCGNIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
              L   LS CA + AL LGK+ H   +K             +  NAL+ MY KC S++ 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVK------AGFQTGYIAGNALLAMYGKCGSIEE 458

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A  +F+ I  K  D+ +W  MI  Y+++G   +ALALF  M      +KP+  TL   L 
Sbjct: 459 AFDVFEDITEK--DIVSWNTMIAGYARHGFGKEALALFESM---KMTIKPDDVTLVGVLS 513

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNV 528
           AC+    +  G +    + +N           C+ID+  R+G +D A  +  ++    + 
Sbjct: 514 ACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDA 573

Query: 529 VSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVL---LYACS-------- 574
            +W +L+    +HG   LG+KA     +M      PD     VL   LYA S        
Sbjct: 574 ATWGALLGASRIHGDTELGEKAAEKVFEME-----PDNSGMYVLLSNLYAASGRWREVRE 628

Query: 575 -HSGMVDQGLK 584
             S M D+G+K
Sbjct: 629 MRSKMRDKGVK 639



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 213/463 (46%), Gaps = 56/463 (12%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           DIV WN  ++AY + G  E  L +F  M     V        NA+ +    G  S  K  
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVT------YNAMIS----GYLSNNK-- 106

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
              + A+KVFE+M  +D++SWN M++GY + G+   A ALF +M ++    +VV+W+A++
Sbjct: 107 --FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK----DVVSWNAML 160

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G+AQ G   EA  +F QM    L  N ++   LLS     G +           +R+  
Sbjct: 161 SGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRI--------EDARRLF- 207

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
            D     +++  N L+  Y + K +D AR +FD +    RD  +W +MI  Y+QNG  ++
Sbjct: 208 -DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV--RDKISWNIMITGYAQNGLLSE 264

Query: 443 ALALFPQMFQQDKLVKP---NAFTLSCALMACARL-------AALRFGRQIHAYVLRNQY 492
           A  LF ++  +D        + F  +  L    R+         + +   I  YV   Q 
Sbjct: 265 ARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 324

Query: 493 EMLIPFVA----------NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           E                 N ++  Y++ G+ID A+++FD + QR+ +SW ++++GY   G
Sbjct: 325 EKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSG 384

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
             ++A   F +M+++G   +       L +C+    ++ G +    + K  G        
Sbjct: 385 QSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAG 443

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
             ++ + G+   ++EA ++ E +  E   + W  ++ G   H 
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG 485



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 185/419 (44%), Gaps = 79/419 (18%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V WN  ++ Y R G  E A ++F  MR+     + VT++A+I+GY        A  VF
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCARKVF 114

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVINAL 397
            +M                                              PD DL+  N +
Sbjct: 115 EKM----------------------------------------------PDRDLISWNVM 128

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +  Y K  ++  AR +F+ +  K  DV +W  M+  ++QNG   +A  +F QM     LV
Sbjct: 129 LSGYVKNGNLSAARALFNQMPEK--DVVSWNAMLSGFAQNGFVEEARKIFDQM-----LV 181

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           K N  + +  L A  +   +   R++  +  +  +E++     NCL+  Y R   +D AR
Sbjct: 182 K-NEISWNGLLSAYVQNGRIEDARRL--FDSKMDWEIV---SWNCLMGGYVRKKRLDDAR 235

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD +  R+ +SW  ++TGY  +GL  +A   F+++       D   +  ++     +G
Sbjct: 236 SLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP----IRDVFAWTAMVSGFVQNG 291

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           M+D+  + F+ M ++  +S     +  ++    ++ ++++A EL + MP   T   W  +
Sbjct: 292 MLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTS-SWNTM 345

Query: 638 LNGCRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           + G     N++  ++    L +   ++D  S+  + + YA +G+ ++   +   MK  G
Sbjct: 346 VTGYAQCGNIDQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/723 (40%), Positives = 415/723 (57%), Gaps = 53/723 (7%)

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
           RLP  A   F  + R    PD +++  +L A G    S   + V A+        +V   
Sbjct: 153 RLP-QALSFFRSIPR----PDSFSYNTLLHALG---VSSSLADVRALFDEMPVKDSVSY- 203

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N +++ +A    +S AR  FD   +    D VSWN ++AAY ++G  +    LF     D
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEK---DAVSWNGMLAAYVRNGRIQEARELF-----D 255

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            + + D +S  NAL A    G   R +    +EEA+K+F +M  +DVVSWN MV+GY+R 
Sbjct: 256 SRTEWDAISW-NALMA----GYVQRSQ----IEEAQKMFNKMPQRDVVSWNTMVSGYARR 306

Query: 294 GSFEDAFALFK--KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           G   +A  LF    +R      +V TW+A+++GYAQ G   EA  VF  M     + N V
Sbjct: 307 GDMAEARRLFDVAPIR------DVFTWTAIVSGYAQNGMLEEAKRVFDAMP----DKNAV 356

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           +  ++++       +   KE            D     ++   N ++  YA+   +D AR
Sbjct: 357 SWNAMMAAYVQRRMMEEAKEL----------FDAMPCRNVASWNTMLTGYAQAGMLDEAR 406

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  +  K  D  +W  M+ +YSQ G + + L LF +M +  + V  +AF  +C L  C
Sbjct: 407 AIFGMMPQK--DAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAF--ACVLSTC 462

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           A +AAL  G Q+H+ +++  Y +   FV N L+ MY + G ++ A   F+ +++R+VVSW
Sbjct: 463 ADIAALECGMQLHSRLIKAGYGVGC-FVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSW 521

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            +++ GY  HG G +A   FD MRK    PD +T + +L ACSHSG+V++G+ YF SM +
Sbjct: 522 NTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHR 581

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           +FG++ + EHY C++DLLGRA RLDEAV L++ MP EP   +W ALL   RIH N ELG 
Sbjct: 582 DFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGR 641

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
            AA ++ ELE E  G Y LLSNIYA++G+W+DV ++R +M   GVKK PG SW++ +   
Sbjct: 642 NAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKV 701

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
            TF VGD  HP+ + IY  L  L  R+K  GYV  T   LHDV++EEK  +L  HSEKLA
Sbjct: 702 HTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLA 761

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +AYGIL   PG PIR+ KNLR+C DCH+A   IS I    IILRDSNRFHHF++GSC+C 
Sbjct: 762 VAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCG 821

Query: 832 GYW 834
            YW
Sbjct: 822 DYW 824



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 23/261 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    ++   +   +LF +M R G   +   F  VL  C ++ +  CG  +H+ + 
Sbjct: 420 WAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLI 479

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+    FV NAL+AMY +C ++  A   F+EM +    D+VSWNT++A YA+ G  + 
Sbjct: 480 KAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER---DVVSWNTMIAGYARHGFGKE 536

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M      + D ++LV  L+AC+           G++E+    F  M     V+
Sbjct: 537 ALEVFDTMR-KTSTKPDDITLVGVLAACS---------HSGLVEKGISYFYSMHRDFGVA 586

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  M+    R G  ++A  L K M  E    +   W A++   A R H +  L  
Sbjct: 587 TKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEP---DSTMWGALLG--ASRIHRNSELGR 641

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +   LEP    +  LLS
Sbjct: 642 NAAEKIFELEPENAGMYVLLS 662



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 163/372 (43%), Gaps = 65/372 (17%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +V+  N  +T + R G   DA  LF  M + +      T++ ++AGYA  G   +AL  F
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTS----TYNTMLAGYAANGRLPQALSFF 161

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R +      P+  +  +LL          LG  +    ++ +   D     D +  N +I
Sbjct: 162 RSIP----RPDSFSYNTLLHA--------LGVSSSLADVRALF--DEMPVKDSVSYNVMI 207

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             +A    V +AR  FD +AP+ +D  +W  M+ +Y +NG   +A  LF      D   +
Sbjct: 208 SSHANHGLVSLARHYFD-LAPE-KDAVSWNGMLAAYVRNGRIQEARELF------DSRTE 259

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA----------NCLIDMYS 508
            +A + + ALMA               YV R+Q E                 N ++  Y+
Sbjct: 260 WDAISWN-ALMA--------------GYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYA 304

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTF 566
           R GD+  AR +FD    R+V +WT++++GY  +G+ ++A   FD M      PD   V++
Sbjct: 305 RRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDKNAVSW 358

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
             ++ A     M+++  + FD+M            +  ++    +A  LDEA  +   MP
Sbjct: 359 NAMMAAYVQRRMMEEAKELFDAMP-----CRNVASWNTMLTGYAQAGMLDEARAIFGMMP 413

Query: 627 MEPTPIIWVALL 638
            +   + W A+L
Sbjct: 414 -QKDAVSWAAML 424


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/726 (38%), Positives = 415/726 (57%), Gaps = 52/726 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQLFDEMF- 197
           +L  C ++PS +    +H++I  SG  + +F  + L+   A   +  LSYA  LF  +  
Sbjct: 31  LLAKCPDIPSLK---QIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHH 87

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           QP   +I  WNT++ A++ +      L LF++M     +  +  +  +   +CA      
Sbjct: 88  QPP--NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHS-GLYPNSHTFPSLFKSCAKSKATH 144

Query: 258 RGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
             KQ                           G +  A+ VF++  ++D VS+ A++TGY 
Sbjct: 145 EAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYV 204

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G  +DA  LF ++  ++V    V+W+A+IAGY Q G   EAL  F +MQ   + PN  
Sbjct: 205 SEGHVDDARRLFDEIPAKDV----VSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQS 260

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+VS+LS C  + +L LGK    +   R          +L ++NAL+DMY+KC  +  AR
Sbjct: 261 TMVSVLSACGHLRSLELGKWIGSWVRDRGFG------KNLQLVNALVDMYSKCGEIGTAR 314

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +FD +  +++DV  W  MIG Y       +AL LF  M +++  V PN  T    L AC
Sbjct: 315 KLFDGM--EDKDVILWNTMIGGYCHLSLYEEALVLFEVMLREN--VTPNDVTFLAVLPAC 370

Query: 472 ARLAALRFGRQIHAYV---LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
           A L AL  G+ +HAY+   L+    +    +   +I MY++ G ++ A  VF ++  R++
Sbjct: 371 ASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSL 430

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
            SW ++++G  M+G  ++A   F++M  EG  PD +TF+ +L AC+ +G V+ G +YF S
Sbjct: 431 ASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M+K++GIS + +HY C++DLL R+ + DEA  L+  M MEP   IW +LLN CRIH  VE
Sbjct: 491 MNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVE 550

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
            GE  A RL ELE E  G+Y LLSNIYA AGRW DVA+IR+ +   G+KK PGC+ ++  
Sbjct: 551 FGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEID 610

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F VGD+ HPQS+ I+ +L  + + ++  G+VP TS  L+D+D+E K   L +HSE
Sbjct: 611 GVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSE 670

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLA+A+G+++T PG+ IRI KNLR+C +CHSA   IS I N EII RD NRFHHFK+G C
Sbjct: 671 KLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFC 730

Query: 829 TCKGYW 834
           +C   W
Sbjct: 731 SCNDRW 736



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 167/589 (28%), Positives = 264/589 (44%), Gaps = 107/589 (18%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIA--AYVSHNAPSPALSLLQRISPSPF 98
           LL +C  +  +  IH  II   L  T    S LI   A       S ALSL   I   P 
Sbjct: 31  LLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPP 90

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN LIR       P ++  LF QM+  G +P+ +TFP + K+C +  ++     +H
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE-------MFQPGIC--------- 202
           A         +  V  +L+ MY++   L +AR +FD+        F   I          
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 203 ------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
                       D+VSWN ++A Y QSG  E  L  F RM  +  V  +  ++V+ LSAC
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ-EADVSPNQSTMVSVLSAC 269

Query: 251 ASL---------GTWSRGK-----------------QCGMMEEAKKVFERMKVKDVVSWN 284
             L         G+W R +                 +CG +  A+K+F+ M+ KDV+ WN
Sbjct: 270 GHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWN 329

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
            M+ GY  +  +E+A  LF+ M +ENV  N VT+ AV                       
Sbjct: 330 TMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAV----------------------- 366

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
                       L  CAS+GAL LGK  H Y  K +      + +++ +  ++I MYAKC
Sbjct: 367 ------------LPACASLGALDLGKWVHAYIDKNLKGT--GNVNNVSLWTSIIVMYAKC 412

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             V+VA  +F ++   +R +A+W  MI   + NG A  AL LF +M  +    +P+  T 
Sbjct: 413 GCVEVAEQVFRSMG--SRSLASWNAMISGLAMNGHAERALGLFEEMINEG--FQPDDITF 468

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDN 522
              L AC +   +  G +  + +  N+   + P + +  C+ID+ +RSG  D A+V+  N
Sbjct: 469 VGVLSACTQAGFVELGHRYFSSM--NKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGN 526

Query: 523 LK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           ++ + +   W SL+    +HG  +   +  +++ +  L P+     VLL
Sbjct: 527 MEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFE--LEPENSGAYVLL 573


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/733 (38%), Positives = 429/733 (58%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN L+   V+     +A ++F +M+  G  P+E+ F  V+ AC        G  VHA++ 
Sbjct: 170 WNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVI 229

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+D +VF  NAL+ MY++   +  A  +F ++ +    D+VSWN  ++     G  + 
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPET---DVVSWNAFISGCVLHGHDQH 286

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            L L  +M     V  +  +L + L ACA  G ++ G+Q  G M +A          + +
Sbjct: 287 ALELLLQMKSSGLVP-NVFTLSSILKACAGSGAFNLGRQIHGFMVKANA-----DSDNYI 340

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           ++  +V  Y++ G  +DA  +F  + Q ++    V W+A+I+G +      EAL +F +M
Sbjct: 341 AF-GLVDMYAKHGLLDDAKKVFDWIPQRDL----VLWNALISGCSHGAQHAEALSLFCRM 395

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  G + N  TL ++L   AS+ A+   ++ H    K     D SH     V+N LID Y
Sbjct: 396 RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSD-SH-----VVNGLIDSY 449

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  ++ A  +F+     + D+  +T MI + SQ     DA+ LF +M +  K + P+ 
Sbjct: 450 WKCDCLNYAYRVFEKHG--SYDIIAFTSMITALSQCDHGEDAIKLFMEMLR--KGLDPDP 505

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F LS  L ACA L+A   G+Q+HA++++ Q+ M   F  N L+  Y++ G I+ A + F 
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDVFAGNALVYTYAKCGSIEDADLAFS 564

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            L ++ VVSW++++ G   HG G +A   F +M  E ++P+ +T   +L AC+H+G+VD+
Sbjct: 565 GLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDE 624

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
             +YF+SM + FGI    EHYAC++DLLGRA +LD+A+EL+  MP +    +W ALL   
Sbjct: 625 AKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAAS 684

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H + ELG LAA +L  LE EK G++ LL+N YA+AG W DVA++R LMK + VKK P 
Sbjct: 685 RVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPA 744

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K+   TF VGD++HP+++ IY  L  L   +   GYVP     LHDVD  EK  
Sbjct: 745 MSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKEL 804

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSE+LA+A+ +++T  G PIR+ KNLRIC DCH+A  FIS I++ EII+RD NRFH
Sbjct: 805 LLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFH 864

Query: 822 HFKEGSCTCKGYW 834
           HF++G+C+C+ YW
Sbjct: 865 HFRDGACSCRDYW 877



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 186/619 (30%), Positives = 290/619 (46%), Gaps = 50/619 (8%)

Query: 39  ITSLLLR--QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           I  LL R    +SL Q   IH  ++   L  V  +HL++ Y     P  A  +   I P 
Sbjct: 7   IGPLLTRYAATQSLLQGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEI-PD 65

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           P  V W ++L+       +P +A   F  M       +E+  P VLK     P +  G+ 
Sbjct: 66  PCHVSW-SSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCA---PDAGFGTQ 121

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD--IVSWNTIVAAY 214
           +HA+  ++G   ++FV NAL+AMY     +  AR +FDE      C+   VSWN +++AY
Sbjct: 122 LHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDE----AGCERNTVSWNGLMSAY 177

Query: 215 AQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
            ++      + +F  M  G V+    G S V  ++AC    T SR  + G    A  V  
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCV--VNAC----TGSRDLEAGRKVHA-MVIR 230

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
               KDV + NA+V  YS++G    A  +F K+ +     +VV+W+A I+G    GH   
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPET----DVVSWNAFISGCVLHGHDQH 286

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           AL++  QM+  GL PNV TL S+L  CA  GA  LG++ H + +K       +   D  +
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVK------ANADSDNYI 340

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
              L+DMYAK   +D A+ +FD I    RD+  W  +I   S      +AL+LF +M ++
Sbjct: 341 AFGLVDMYAKHGLLDDAKKVFDWI--PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKE 398

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              V  N  TL+  L + A L A+   RQ+HA   +  + +    V N LID Y +   +
Sbjct: 399 GFDV--NRTTLAAVLKSTASLEAISDTRQVHALAEKLGF-LSDSHVVNGLIDSYWKCDCL 455

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           + A  VF+     +++++TS++T       G+ A   F +M ++GL PD      LL AC
Sbjct: 456 NYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515

Query: 574 SHSGMVDQGLKYFDS------MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
           +     +QG +          MS  F  +A    YA       +   +++A     G+P 
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYA-------KCGSIEDADLAFSGLP- 567

Query: 628 EPTPIIWVALLNGCRIHAN 646
           E   + W A++ G   H +
Sbjct: 568 EKGVVSWSAMIGGLAQHGH 586


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/796 (35%), Positives = 443/796 (55%), Gaps = 31/796 (3%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPS--HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LL    +L+Q+  I  Q+I+  + +   S   L   +    A +    L  ++S     +
Sbjct: 20  LLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP--DL 77

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           F +N LIR      LP ++  L+  + +     PD +T+ F + A   L   R G  +HA
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G  SN+FV +A++ +Y +      AR++FD M +    D V WNT+++ ++++  
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPER---DTVLWNTMISGFSRNSY 194

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            E  + +F  M  DV +  D  +L   L+A A L  +  G     +   K +       D
Sbjct: 195 FEDSIRVFVDML-DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH-----SD 248

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V     +++ YS+ G       LF ++ Q ++    ++++A+I+GY        A+ +FR
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDL----ISYNAMISGYTFNHETESAVTLFR 304

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           ++   G   N  TLV L+        L L +     ++K  + +  S      V  AL  
Sbjct: 305 ELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS------VSTALTT 358

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +Y +   V  AR +FD  +P+ + +A+W  MI  Y+QNG  + A++LF +M  Q   + P
Sbjct: 359 VYCRLNEVQFARQLFDE-SPE-KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ---LSP 413

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N  T++  L ACA+L AL  G+ +H  +   + E  + +V+  L+DMY++ G I  AR +
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV-YVSTALVDMYAKCGSIVEARQL 472

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +  +NVV+W +++TGYG+HG G +A   F +M + G+ P GVTFL +LYACSHSG+V
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLV 532

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +G + F SM+  +G    +EHYAC+VD+LGRA +L  A+E IE MP+EP P +W ALL 
Sbjct: 533 SEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLG 592

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            C IH N E+  +A+ RL +L+ E  G Y LLSNIY+    +   A +R ++K   + K 
Sbjct: 593 ACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKT 652

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT-SFALHDVDDEE 758
           PGC+ ++  +    F  GDR+HPQ+  I+E+L  L  +++  GY  +T + ALHDV+DEE
Sbjct: 653 PGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEE 712

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  ++  HSEKLA+A+G+++T PGT IRI KNLR+C DCH+A  FIS I    I++RD+N
Sbjct: 713 KELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDAN 772

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK G C+C  YW
Sbjct: 773 RFHHFKNGICSCGDYW 788


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/798 (36%), Positives = 440/798 (55%), Gaps = 32/798 (4%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLL-QRISPSP 97
           SLL    K+L  V   H QII  +L+      + L+ AY    +   A  +  Q   P  
Sbjct: 36  SLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKG 95

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
                 NA++   ++         LF  M  R    D  +  F LKAC        G  +
Sbjct: 96  LLC---NAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEI 152

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            +     G + N FV +++++   +   +  A+++FD M      D+V WN+I+  Y Q+
Sbjct: 153 ISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNK---DVVCWNSIIGGYVQA 209

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +    LF  M G   ++   +++ + + AC  +G    GK C        V      
Sbjct: 210 GCFDVAFQLFFEMHGS-GIKPSPITMTSLIQACGGIGNLKLGK-C----MHGYVLGLGLG 263

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D++   + V  YS++G  E A  +F KM   N+    V+W+A+I+G  + G   E+ D+
Sbjct: 264 NDILVLTSFVDMYSKMGDIESARWVFYKMPTRNL----VSWNAMISGCVRNGLVGESFDL 319

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F ++       ++ T+VSLL GC+   +L  GK  H   I+       S   +L++  A+
Sbjct: 320 FHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-------SFESNLILSTAI 372

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +D+Y+KC S+  A  +F+ +  K+R+V TWT M+   +QNG A DAL LF QM  Q++ +
Sbjct: 373 VDLYSKCGSLKQATFVFNRM--KDRNVITWTAMLVGLAQNGHAEDALRLFAQM--QEEGI 428

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
             N+ T    + +CA L +L+ GR IH ++ R  +   I  +   L+DMY++ G I+ A 
Sbjct: 429 AANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMT-ALVDMYAKCGKINLAE 487

Query: 518 VVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
            +F +    ++VV W S++TGYGMHG G +A   + +M +EGL P+  TFL LL ACSHS
Sbjct: 488 RIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHS 547

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
            +V+QG+  F+SM ++  I    +HYAC+VDLL RA R +EA  LIE MP +P   +  A
Sbjct: 548 RLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEA 607

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+GCR H N+ LG   +++LL L++   G Y +LSNIYA A RW  V  IR LM++ G+
Sbjct: 608 LLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGL 667

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG S V+      TFF GD +HP  ++IY  L  L   ++  GYVP TS  L DVD+
Sbjct: 668 KKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDE 727

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K  +L+ HSE+LA+A+G+LTT  G+ IRITKNLR+CGDCH+   +IS I+  EII+RD
Sbjct: 728 EMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRD 787

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHF  G C+C  YW
Sbjct: 788 ANRFHHFSNGECSCGDYW 805


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 298/837 (35%), Positives = 455/837 (54%), Gaps = 101/837 (12%)

Query: 37  IKITSL--LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQR 92
           +K+++L  LL+ CK       +  Q I+  L   P   S LI  + SH+          R
Sbjct: 1   MKVSTLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLIN-FSSHSTTLVPFHYSLR 59

Query: 93  I-----SPSPFSVFWWNALIRRAVRLR-LPDNA---FRLFLQMMRRGWHPDEYTFPFVLK 143
           I     +P+ F+   WN ++R  + L+  P  A   ++LFL    +   PD YT+P +L+
Sbjct: 60  IFNHLRNPNTFT---WNTIMRAHLYLQNSPHQALLHYKLFLASHAK---PDSYTYPILLQ 113

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
            C    S   G  +HA   SSGFD +V+V N LM +YA C ++  AR++F+E     + D
Sbjct: 114 CCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEE---SPVLD 170

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           +VSWNT++A Y Q+G+                                            
Sbjct: 171 LVSWNTLLAGYVQAGE-------------------------------------------- 186

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            +EEA++VFE M  ++ ++ N+M+  + R G  E A  +F  +R    + ++V+WSA+++
Sbjct: 187 -VEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGR--ERDMVSWSAMVS 243

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK----- 378
            Y Q   G EAL +F +M+  G+  + V +VS LS C+ V  + +G+  H   +K     
Sbjct: 244 CYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVED 303

Query: 379 ---------------------RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
                                R +  DG    DL+  N++I  Y +C S+  A ++F ++
Sbjct: 304 YVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM 363

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  DV +W+ MI  Y+Q+   ++ALALF +M  Q   V+P+   L  A+ AC  LA L
Sbjct: 364 PEK--DVVSWSAMISGYAQHECFSEALALFQEM--QLHGVRPDETALVSAISACTHLATL 419

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G+ IHAY+ RN+ ++ +  ++  LIDMY + G ++ A  VF  ++++ V +W +++ G
Sbjct: 420 DLGKWIHAYISRNKLQVNV-ILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILG 478

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
             M+G  +++   F  M+K G  P+ +TF+ +L AC H G+V+ G  YF+SM  E  I A
Sbjct: 479 LAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEA 538

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             +HY C+VDLLGRA  L EA ELI+ MPM P    W ALL  CR H + E+GE    +L
Sbjct: 539 NIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKL 598

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           ++L+ + DG + LLSNIYA+ G W +V  IR +M   GV K PGCS ++       F  G
Sbjct: 599 IQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAG 658

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D+THPQ   I  +L  +  ++K  GYVP TS    D+D+EEK   LF HSEKLA+A+G++
Sbjct: 659 DKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLI 718

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           T +P TPIR+TKNLRIC DCH+ +  IS   + +I++RD +RFHHFK G+C+C  +W
Sbjct: 719 TISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/730 (38%), Positives = 417/730 (57%), Gaps = 47/730 (6%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQ 191
           +++ +  +L+ C  + + +    +H++I  +G ++ VFV + L+   A   +  LSYA  
Sbjct: 27  EQHPYLNLLEKCKNINTFK---QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALS 83

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LF+E  Q    ++  WN+++  Y+ S      L LF+RM     VQ +  +      +C 
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLY-YGVQPNSHTFPFLFKSCT 142

Query: 252 SLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNA 285
                  GKQ                           G M+ A+ VF++  ++D VS+ A
Sbjct: 143 KAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTA 202

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++TGY   G  +DA  LF ++  ++V    V+W+A+I+GY Q G   EA+  F +MQ   
Sbjct: 203 LITGYVSQGCLDDARRLFDEIPVKDV----VSWNAMISGYVQSGRFEEAIVCFYEMQEAN 258

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + PN  T+V +LS C    +  LGK    +        D     +L + NALIDMY KC 
Sbjct: 259 VLPNKSTMVVVLSACGHTRSGELGKWIGSWV------RDNGFGSNLQLTNALIDMYCKCG 312

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
             D+AR +FD I  K  DV +W  MIG YS      +ALALF  M + +  VKPN  T  
Sbjct: 313 ETDIARELFDGIEEK--DVISWNTMIGGYSYLSLYEEALALFEVMLRSN--VKPNDVTFL 368

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L ACA L AL  G+ +HAY+ +N        +   LIDMY++ G I+ A  VF ++  
Sbjct: 369 GILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHS 428

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APDGVTFLVLLYACSHSGMVDQGLK 584
           RN+ SW ++++G+ MHG  ++A   F +M  +GL  PD +TF+ +L AC+ +G+VD G +
Sbjct: 429 RNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQ 488

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YF SM +++GIS + +HY C++DLL RA + +EA  L++ M MEP   IW +LL+ C+ H
Sbjct: 489 YFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAH 548

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
             VE GE  A RL +LE E  G++ LLSNIYA AGRW DVARIR+ +   G+KK PGC+ 
Sbjct: 549 GRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTS 608

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           ++       F VGD+ HP+   IY++L  + + ++  G+VP TS  L+D+D+E K   L 
Sbjct: 609 IEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALS 668

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
           +HSEKLA+++G++ T PGT IRI KNLR+CG+CHSA   IS I N EII RD NRFHHFK
Sbjct: 669 QHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 728

Query: 825 EGSCTCKGYW 834
           +G C+C   W
Sbjct: 729 DGFCSCNDCW 738



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 267/590 (45%), Gaps = 110/590 (18%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLI--AAYVSHNAPSPALSLLQRISPS-P 97
           LL +CK++     IH  II   L +     S LI   A       S ALSL +       
Sbjct: 34  LLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHK 93

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +VF WN+LIR       P ++  LF +M+  G  P+ +TFPF+ K+C +  ++  G  +
Sbjct: 94  HNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQL 153

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE---------------------- 195
           HA         N  V  +++ MYA    + +AR +FD+                      
Sbjct: 154 HAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCL 213

Query: 196 -----MF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
                +F +  + D+VSWN +++ Y QSG  E  ++ F  M  +  V  +  ++V  LSA
Sbjct: 214 DDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ-EANVLPNKSTMVVVLSA 272

Query: 250 CAS---------LGTWSRGK-----------------QCGMMEEAKKVFERMKVKDVVSW 283
           C           +G+W R                   +CG  + A+++F+ ++ KDV+SW
Sbjct: 273 CGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISW 332

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N M+ GYS +  +E+A ALF+ M + NVK                               
Sbjct: 333 NTMIGGYSYLSLYEEALALFEVMLRSNVK------------------------------- 361

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
               PN VT + +L  CA +GAL LGK  H Y  K +      +  +  +  +LIDMYAK
Sbjct: 362 ----PNDVTFLGILHACACLGALDLGKWVHAYIDKNL-----RNSSNASLWTSLIDMYAK 412

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  ++ A  +F ++   +R++A+W  M+  ++ +G A  ALALF +M  +  L +P+  T
Sbjct: 413 CGCIEAAERVFRSM--HSRNLASWNAMLSGFAMHGHAERALALFSEMVNKG-LFRPDDIT 469

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFD 521
               L AC +   +  G Q    ++++    + P + +  C+ID+ +R+   + A ++  
Sbjct: 470 FVGVLSACTQAGLVDLGHQYFRSMIQDY--GISPKLQHYGCMIDLLARAEKFEEAEILMK 527

Query: 522 NLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           N++ + +   W SL++    HG  +   +  +++ +  L P+     VLL
Sbjct: 528 NMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQ--LEPENAGAFVLL 575


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/758 (37%), Positives = 430/758 (56%), Gaps = 29/758 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ +V       A ++  R+      +F WN L+    +    D A  L+ +++  G  
Sbjct: 75  LLSMFVRFGDVGNAWNVFGRMGER--DLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD YTFP VL++C        G  VHA +    FD +V V NAL+ MY +C  +  AR L
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARML 192

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD+M      D +SWN +++ Y ++ +   GL LF RM  ++ +  D +++ + +SAC  
Sbjct: 193 FDKMPTR---DRISWNAMISGYFENDECLEGLELFFRMR-ELSIDPDLMTMTSVISACEL 248

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           LG    G Q         V       ++  +N+++  Y  +G +++A ++F  M   +V 
Sbjct: 249 LGDERLGTQL-----HSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDV- 302

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              V+W+ +I+G        +AL+ ++ M+  G  P+ VT+ S+LS CAS+G L +G + 
Sbjct: 303 ---VSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKL 359

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H       L+    H   ++V N+LIDMY+KCK ++ A  +F  I  K  DV +WT +I 
Sbjct: 360 H------ELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK--DVISWTSVIN 411

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
               N    +AL  F +M  + K   PN+ TL  AL ACAR+ AL  G++IHA+ L+   
Sbjct: 412 GLRINNRCFEALIFFRKMILKSK---PNSVTLISALSACARVGALMCGKEIHAHALKAGM 468

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
                F+ N ++D+Y R G + TA   F NL +++V +W  L+TGY   G G      F 
Sbjct: 469 G-FDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFK 526

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M +  + PD VTF+ LL ACS SGMV +GL+YF  M   + I+   +HYAC+VDLLGRA
Sbjct: 527 RMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRA 586

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            +L+EA E IE MP++P P IW ALLN CRIH +V LGELAA  + + ++E  G Y LL 
Sbjct: 587 GKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLC 646

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N+YA++G+W +VA++R  MK  G+   PGCSWV+ K     F  GD  HPQ Q+I  +L 
Sbjct: 647 NLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLE 706

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
           G  +++K  G+  Q   ++  +    K D+   HSE+ A+AY ++ +APG PI +TKNL 
Sbjct: 707 GFYEKMKTSGFNGQECSSMDGI-QTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLY 765

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           +C  CHS + FIS I+  EI +RD+ +FHHFK+G C+C
Sbjct: 766 MCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSC 803



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 215/408 (52%), Gaps = 26/408 (6%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+++ + R G   +A+ +F +M + ++     +W+ ++ GY + G   EAL ++ ++ +
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDL----FSWNVLVGGYTKAGFFDEALCLYHRILW 128

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+V T  S+L  CA    L+ G+E H + ++    +      D+ V+NALI MY K
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM------DVDVVNALITMYVK 182

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V  AR++FD +    RD  +W  MI  Y +N    + L LF +M  ++  + P+  T
Sbjct: 183 CGDVVSARMLFDKMP--TRDRISWNAMISGYFENDECLEGLELFFRM--RELSIDPDLMT 238

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++  + AC  L   R G Q+H+YV+R  Y+  I  V N LI MY   G    A  VF  +
Sbjct: 239 MTSVISACELLGDERLGTQLHSYVVRTAYDGNIS-VYNSLIQMYLSVGHWKEAESVFSGM 297

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           + R+VVSWT++++G   + L DKA   +  M   G  PD VT   +L AC+  G +D G+
Sbjct: 298 ECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM 357

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           K  + +++  G          ++D+  +  R+++A+E+   +P +   I W +++NG RI
Sbjct: 358 KLHE-LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVINGLRI 415

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
           + N     L   R + L+S K  S TL+S + A        AR+ +LM
Sbjct: 416 N-NRCFEALIFFRKMILKS-KPNSVTLISALSA-------CARVGALM 454



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/430 (19%), Positives = 163/430 (37%), Gaps = 68/430 (15%)

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G    AL     M +    V+ + F     L  C        G  +   VL +   +L 
Sbjct: 11  SGNLEQALKHLASMQEVKIPVEEDCFVALIRL--CENKRGYSEGEYVWKAVLSSLVTLLS 68

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             + N L+ M+ R GD+  A  VF  + +R++ SW  L+ GY   G  D+A   + ++  
Sbjct: 69  VRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW 128

Query: 557 EGLAPDGVTFLVLLYACS-----------HSGMV----DQGLKYFDSMSKEFGISARAEH 601
            G+ PD  TF  +L +C+           H+ +V    D  +   +++   +        
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS 188

Query: 602 YACIVDLLGRANRL------------DEAVELIE------GMPMEPTPIIWVALLNGCRI 643
              + D +   +R+            DE +E +E       + ++P  +   ++++ C +
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 644 HANVELGELAANRLLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
             +  LG    + ++    + + S Y  L  +Y + G WK+   + S     G++ R   
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFS-----GMECRDVV 303

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEI---------LAGLVQRIKAMGYVPQTSFALHD 753
           SW     G     + D+   ++ K  EI         +A ++    ++G +      LH+
Sbjct: 304 SWTTIISGCVDNLLPDKA-LETYKTMEITGTMPDEVTIASVLSACASLGQL-DMGMKLHE 361

Query: 754 VDDEEKGDLL-----------FEHSEKLALAYGILTTAPGTPI----RITKNLRICGDCH 798
           +  E  G +L           +   +++  A  I    P   +     +   LRI   C 
Sbjct: 362 L-AERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCF 420

Query: 799 SAITFISMII 808
            A+ F   +I
Sbjct: 421 EALIFFRKMI 430


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/725 (37%), Positives = 402/725 (55%), Gaps = 76/725 (10%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N F  N+L++MYA+   L+ AR +F +M +    D VSW  +V    ++G     +  F 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPER---DAVSWTVMVVGLNRAGRFWDAVKTFL 152

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            M G+  +      L N LS+CA+      G++                          C
Sbjct: 153 DMVGE-GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKC 211

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G  E A+ VFERMKV+   SWNAMV+ Y+  G  + A ++F+ M + ++    V+W+A+I
Sbjct: 212 GDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAII 267

Query: 323 AGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           AGY Q G    AL  F R +    +EP+  T+ S+LS CA++  L +GK+ H Y ++  +
Sbjct: 268 AGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGM 327

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP---------------------- 419
                 P    ++NALI  YAK  SV+ AR + D                          
Sbjct: 328 ------PYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTK 381

Query: 420 ---------KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
                     NRDV  WT MI  Y QNG  ++A+ LF  M +     +PN+ TL+  L A
Sbjct: 382 QAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGP--EPNSHTLAAVLSA 439

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVV 529
           CA LA L +G+QIH   +R+  E  +  V+N +I +Y+RSG +  AR VFD +  ++  V
Sbjct: 440 CASLAYLGYGKQIHCRAIRSLQEQSVS-VSNAIITVYARSGSVPLARRVFDQICWRKETV 498

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +WTS++     HGLG++A   F++M + G+ PD VT++ +  AC+H+G +D+G +Y++ M
Sbjct: 499 TWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQM 558

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
             E GI     HYAC+VDLL RA  L EA E I+ MP+ P  ++W +LL  CR+  N +L
Sbjct: 559 LNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADL 618

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            ELAA +LL ++ +  G+Y+ L+N+Y+  GRW D ARI  L K   VKK  G SW   + 
Sbjct: 619 AELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQS 678

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F   D  HPQ   I +  A + + IK  G+VP  +  LHDVDDE K +LL  HSEK
Sbjct: 679 KVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEK 738

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A+G+++T   T +RI KNLR+C DCH+AI FIS +++ EII+RD+ RFHHF++G C+
Sbjct: 739 LAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCS 798

Query: 830 CKGYW 834
           CK YW
Sbjct: 799 CKDYW 803



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 233/496 (46%), Gaps = 74/496 (14%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
           +A + FL M+  G  P ++    VL +C    +   G  VH+ +   G  S V V N+++
Sbjct: 146 DAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVL 205

Query: 178 AMYARCDTLSYARQLFDEM---------------FQPGICD-------------IVSWNT 209
            MY +C     AR +F+ M                  G  D             IVSWN 
Sbjct: 206 YMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNA 265

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------- 261
           I+A Y Q+G  +  L  F+RM     ++ D  ++ + LSACA+L     GKQ        
Sbjct: 266 IIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRT 325

Query: 262 ------------------CGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFA 301
                              G +E A+++ ++  V D  V+S+ A++ GY ++G  + A  
Sbjct: 326 GMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQARE 385

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  M       +V+ W+A+I GY Q G   EA+++FR M   G EPN  TL ++LS CA
Sbjct: 386 VFDVMNNR----DVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACA 441

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           S+  L  GK+ HC  I+ +          + V NA+I +YA+  SV +AR +FD I  + 
Sbjct: 442 SLAYLGYGKQIHCRAIRSL------QEQSVSVSNAIITVYARSGSVPLARRVFDQICWR- 494

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           ++  TWT MI + +Q+G    A+ LF +M +    VKP+  T      AC     +  G+
Sbjct: 495 KETVTWTSMIVALAQHGLGEQAIVLFEEMLRVG--VKPDRVTYIGVFSACTHAGFIDKGK 552

Query: 482 QIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
           + +  +L N++  ++P +++  C++D+ +R+G +  A      +    + V W SL+   
Sbjct: 553 RYYEQML-NEHG-IVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAAC 610

Query: 539 GMHGLGDKAHWAFDQM 554
            +    D A  A +++
Sbjct: 611 RVRKNADLAELAAEKL 626



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 36/250 (14%)

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G+  H + +K  L V     ++L+   A   +   C     AR +FD I    R+  TW 
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGC--FHEARRLFDDIPYARRNAFTWN 101

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKL-----------------------------VKP 459
            ++  Y+++G   DA  +F QM ++D +                             + P
Sbjct: 102 SLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAP 161

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           + F L+  L +CA   A   GR++H++V++      +P VAN ++ MY + GD +TAR V
Sbjct: 162 SQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVP-VANSVLYMYGKCGDAETARAV 220

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F+ +K R+  SW ++++ Y   G  D A   F+ M +  +    V++  ++   + +G+ 
Sbjct: 221 FERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGYNQNGLD 276

Query: 580 DQGLKYFDSM 589
           D  LK+F  M
Sbjct: 277 DMALKFFSRM 286



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 28/277 (10%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           I  + +V +L  +  + L+  YV       A  +   ++     V  W A+I    +   
Sbjct: 353 IMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNR--DVIAWTAMIVGYEQNGQ 410

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
            D A  LF  M+R G  P+ +T   VL AC  L     G  +H     S  + +V V NA
Sbjct: 411 NDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNA 470

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGIC---DIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           ++ +YAR  ++  AR++FD+     IC   + V+W +++ A AQ G  E  ++LF  M  
Sbjct: 471 IITVYARSGSVPLARRVFDQ-----ICWRKETVTWTSMIVALAQHGLGEQAIVLFEEML- 524

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMV 287
            V V+ D V+ +   SAC            G +++ K+ +E+M      V ++  +  MV
Sbjct: 525 RVGVKPDRVTYIGVFSACT---------HAGFIDKGKRYYEQMLNEHGIVPEMSHYACMV 575

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
              +R G   +A    ++M    V  + V W +++A 
Sbjct: 576 DLLARAGLLTEAHEFIQRM---PVAPDTVVWGSLLAA 609


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/783 (36%), Positives = 438/783 (55%), Gaps = 67/783 (8%)

Query: 80  HNAPSPALSLLQRISPSPF------SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           H++ S   + +Q+    P        +  WN  I   +R      A R+F +M R  W  
Sbjct: 33  HSSKSSTQTQIQKSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPR--WSS 90

Query: 134 DEYT--FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             Y       L+  GE   +R       ++     + ++   N ++  Y R   L  AR+
Sbjct: 91  VSYNAMISGYLRN-GEFELAR-------MLFDEMPERDLVSWNVMIKGYVRNRNLGKARE 142

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-----VSLVNA 246
           LF+ M +  +C   SWNTI++ YAQ+G  +    +F RM     V  +      V     
Sbjct: 143 LFERMPERDVC---SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKL 199

Query: 247 LSACASLGT---WS------------RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
             AC   G+   W+            + K+   + EA++ F+ MKV+DVVSWN ++TGY+
Sbjct: 200 EEACVLFGSRENWALVSWNCLLGGFVKKKK---IVEARQFFDSMKVRDVVSWNTIITGYA 256

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           + G  ++A  LF     E+   +V TW+A+++GY Q     EA ++F +M     E N V
Sbjct: 257 QNGEIDEARQLF----DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP----ERNEV 308

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           +  ++L+G      + + KE       R +S            N +I  YA+C  +  A+
Sbjct: 309 SWNAMLAGYVQGERVEMAKELFDVMPCRNVST----------WNTMITGYAQCGKISEAK 358

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +FD + PK RD  +W  MI  YSQ+G + +AL LF  M ++   +  ++F  S AL  C
Sbjct: 359 NLFDKM-PK-RDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSF--SSALSTC 414

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           A + AL  G+Q+H  +++  YE    FV N L+ MY + G I+ A  +F  +  +++VSW
Sbjct: 415 ADVVALELGKQLHGRLVKGGYETGC-FVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 473

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            +++ GY  HG G++A   F+ M++EGL PD  T + +L ACSH+G+VD+G +YF +M++
Sbjct: 474 NTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQ 533

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           ++G+   ++HYAC+VDLLGRA  L+EA  L++ MP EP   IW  LL   R+H N EL E
Sbjct: 534 DYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAE 593

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
            AA+++  +E E  G Y LLSN+YA++GRW DV ++R  M+  GVKK PG SW++ +  T
Sbjct: 594 TAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKT 653

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
            TF VGD  HP+  +I+  L  L  R+K  GYV +TS  LHDV++EEK  ++  HSE+LA
Sbjct: 654 HTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLA 713

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +AYGI+  + G PIR+ KNLR+C DCH+AI +++ +    IILRD+NRFHHFK+GSC+C 
Sbjct: 714 VAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCG 773

Query: 832 GYW 834
            YW
Sbjct: 774 DYW 776



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 128/292 (43%), Gaps = 27/292 (9%)

Query: 73  LIAAYVSHNAPSPALSLLQRISP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           +I  Y      S A +L  ++    P S   W A+I    +      A RLF+ M R G 
Sbjct: 344 MITGYAQCGKISEAKNLFDKMPKRDPVS---WAAMIAGYSQSGHSYEALRLFVLMEREGG 400

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             +  +F   L  C ++ +   G  +H  +   G+++  FV NAL+ MY +C ++  A  
Sbjct: 401 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 460

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LF EM      DIVSWNT++A Y++ G  E  L  F  M  +  ++ D  ++V  LSAC+
Sbjct: 461 LFKEMAGK---DIVSWNTMIAGYSRHGFGEEALRFFESMKRE-GLKPDDATMVAVLSACS 516

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA-----MVTGYSRIGSFEDAFALFKKM 306
                      G++++ ++ F  M     V  N+     MV    R G  E+A  L K M
Sbjct: 517 ---------HTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
             E    +   W  ++   A R HG+  L      +   +EP    +  LLS
Sbjct: 568 PFEP---DAAIWGTLLG--ASRVHGNTELAETAADKIFAMEPENSGMYVLLS 614


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 289/764 (37%), Positives = 416/764 (54%), Gaps = 93/764 (12%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-----FQPGIC------ 202
           G S+HA I  +G    VF+ N LM  YA+   +  A ++FDEM     F   I       
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 203 -----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
                            D VSW  ++  Y Q G  E  + +F  M  D  V     +L N
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSD-DVPPTQFTLTN 150

Query: 246 ALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERMKVKD 279
            L++CA++     G++                           G    AK VF+RMK+K 
Sbjct: 151 VLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
             SWN M++ + + G  + A   F++M    ++ +VV+W+A+I+GY Q G   EALD+F 
Sbjct: 211 TSSWNTMISSHMQSGLVDLAQVQFEQM----IERDVVSWNAMISGYNQHGFDREALDIFS 266

Query: 340 QMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD--------- 389
           +M      +P+  TL S LS CA++  L LGK+ H + I+      G+  +         
Sbjct: 267 KMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKS 326

Query: 390 ------------------DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
                             D++   AL+D Y K   ++ AR +FD++  + RDV  WT MI
Sbjct: 327 GGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSL--RVRDVVAWTAMI 384

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y QNG   DA+ LF  M ++    KPN +TL+  L   + LA+L  GRQIHA   R+ 
Sbjct: 385 VGYVQNGFNQDAMELFRSMIKEGP--KPNNYTLATMLSVSSSLASLDHGRQIHASATRSG 442

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWA 550
               +  V+N LI MY++SG I+ AR VF+ +  +R+ ++WTS++     HGLG++A   
Sbjct: 443 NASSVS-VSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTL 501

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F++M + G+ PD +T++ +L AC+H G+V+QG  Y++ M     I     HYAC++DL G
Sbjct: 502 FERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFG 561

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA  L EA   IE MP+EP  I W +LL  C++H NVEL E+AA RLL +E E  G+Y+ 
Sbjct: 562 RAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSA 621

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           L+N+Y+  G+W++ A IR  MK  GVKK  G SWVQ K     F V D  HPQ   IYE+
Sbjct: 622 LANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEM 681

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           +A + + IK MG+VP T   LHD+++E K  +L  HSEKLA+A+G++ T   T +RI KN
Sbjct: 682 MAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKN 741

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCHSAI FIS ++  EII+RD+ RFHHFK G C+C+ YW
Sbjct: 742 LRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/661 (40%), Positives = 391/661 (59%), Gaps = 40/661 (6%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N +++ +A    +S AR  FD   +    D VSWN ++AAY ++G  E    LF     +
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEK---DAVSWNGMLAAYVRNGRVEEARGLF-----N 186

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            + + D +S    +S            Q G M EA+++F+RM  +DVVSWN MV+GY+R 
Sbjct: 187 SRTEWDAISWNALMSGYV---------QWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 237

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   +A  LF      +V     TW+AV++GYAQ G   EA  VF  M     E N V+ 
Sbjct: 238 GDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSW 289

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            ++++  A +   ++ +    + +    +V           N ++  YA+   ++ A+ +
Sbjct: 290 NAMVA--AYIQRRMMDEAKELFNMMPCRNVAS--------WNTMLTGYAQAGMLEEAKAV 339

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +  K  D  +W  M+ +YSQ G + + L LF +M +  + V  +AF  +C L  CA 
Sbjct: 340 FDTMPQK--DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF--ACVLSTCAD 395

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +AAL  G Q+H  ++R  Y +   FV N L+ MY + G+++ AR  F+ +++R+VVSW +
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGC-FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNT 454

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ GY  HG G +A   FD MR     PD +T + +L ACSHSG+V++G+ YF SM  +F
Sbjct: 455 MIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 514

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           G++A+ EHY C++DLLGRA RL EA +L++ MP EP   +W ALL   RIH N ELG  A
Sbjct: 515 GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 574

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A ++ ELE E  G Y LLSNIYA++G+W+D  ++R +M+  GVKK PG SW++ +    T
Sbjct: 575 AEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHT 634

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  GD  HP+ +KIY  L  L  R+K  GYV  T   LHDV++EEK  +L  HSEKLA+A
Sbjct: 635 FSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVA 694

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           YGIL   PG PIR+ KNLR+CGDCH+A  +IS I    I+LRDSNRFHHF+ GSC+C  Y
Sbjct: 695 YGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDY 754

Query: 834 W 834
           W
Sbjct: 755 W 755



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 141/511 (27%), Positives = 226/511 (44%), Gaps = 88/511 (17%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++AAYV +     A  L    S + +    WNAL+   V+      A  LF +M      
Sbjct: 168 MLAAYVRNGRVEEARGLFN--SRTEWDAISWNALMSGYVQWGKMSEARELFDRM------ 219

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS----NVFVCNALMAMYARCDTLSY 188
           P      + +   G    +R G  V A      FD+    +VF   A+++ YA+   L  
Sbjct: 220 PGRDVVSWNIMVSG---YARRGDMVEARRL---FDAAPVRDVFTWTAVVSGYAQNGMLEE 273

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR++FD M +    + VSWN +VAAY Q                                
Sbjct: 274 ARRVFDAMPER---NAVSWNAMVAAYIQR------------------------------- 299

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                          MM+EAK++F  M  ++V SWN M+TGY++ G  E+A A+F  M Q
Sbjct: 300 --------------RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           +    + V+W+A++A Y+Q G   E L +F +M  CG   N      +LS CA + AL  
Sbjct: 346 K----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G + H   I+    V         V NAL+ MY KC +++ AR  F+ +  + RDV +W 
Sbjct: 402 GMQLHGRLIRAGYGV------GCFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWN 453

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI  Y+++G   +AL +F  M  +    KP+  TL   L AC+    +  G   + Y +
Sbjct: 454 TMIAGYARHGFGKEALEIFDMM--RTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSM 510

Query: 489 RNQYEMLI-PFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDK 546
            + + +   P    C+ID+  R+G +  A  +  ++  + +   W +L+    +H   + 
Sbjct: 511 HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPEL 570

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL---YACS 574
              A +++ +  L P+     VLL   YA S
Sbjct: 571 GRSAAEKIFE--LEPENAGMYVLLSNIYASS 599



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 196/470 (41%), Gaps = 71/470 (15%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM-RQENVKLNVVTWS 319
           + G + +A+++F  M  +   ++NAM+ GYS  G    A +LF+ + R +N   N +  +
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI-- 377
             ++       G     +F +M       + VT   ++S  A+ G + L +  H + +  
Sbjct: 110 LAVSSSLADARG-----LFDEMPV----RDSVTYNVMISSHANHGLVSLAR--HYFDLAP 158

Query: 378 -KRVLSVDG-------------------SHPD-DLMVINALIDMYAKCKSVDVARVMFDA 416
            K  +S +G                   S  + D +  NAL+  Y +   +  AR +FD 
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDR 218

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +    RDV +W +M+  Y++ G   +A  LF      D     + FT +  +   A+   
Sbjct: 219 M--PGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPVRDVFTWTAVVSGYAQNGM 270

Query: 477 LRFGRQI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           L   R++  A   RN          N ++  Y +   +D A+ +F+ +  RNV SW +++
Sbjct: 271 LEEARRVFDAMPERNAVSW------NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TGY   G+ ++A   FD M ++    D V++  +L A S  G  ++ L+ F  M +  G 
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGR-CGE 379

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG----- 650
                 +AC++        L+  ++L          +I      GC +  N  L      
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQL-------HGRLIRAGYGVGCFV-GNALLAMYFKC 431

Query: 651 ---ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
              E A N   E+E     S+  +   YA  G  K+   I  +M+ T  K
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/862 (34%), Positives = 451/862 (52%), Gaps = 132/862 (15%)

Query: 33  TTP--CIKITSLLLRQCKSLTQVYL---IHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSP 85
           T P  CI+I + +L++C+ L  + L   +H Q++V   ++     S L+  Y        
Sbjct: 83  TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +  ++S    +VF W A++     L   +   +LF  M+  G  PD + FP V KAC
Sbjct: 143 ARRMFDKMSER--NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 200

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM--------- 196
            EL + R G  V+  + S GF+ N  V  +++ M+ +C  +  AR+ F+E+         
Sbjct: 201 SELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWN 260

Query: 197 -----------FQPGI-C-----------DIVSWNTIVAAYAQSGDAEGGLMLFARMTG- 232
                      F+  + C           D V+WN I++ YAQSG  E     F  M G 
Sbjct: 261 IMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGL 320

Query: 233 -DVK---------------------------------VQGDGVSLVNALSACASLGTWSR 258
            D K                                 V+ + +++ +A+SAC +L     
Sbjct: 321 KDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRH 380

Query: 259 GKQ---------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
           G++                           C  +E A++ F  +K  D+VSWNAM+ GY+
Sbjct: 381 GREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYA 440

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             GS E+A  L  +M+ + ++ +++TW+ ++ G+ Q G G  AL+ F++M   G++PN  
Sbjct: 441 LRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTT 500

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+   L+ C  V  L LGKE H Y ++  + +         V +ALI MY+ C S++VA 
Sbjct: 501 TISGALAACGQVRNLKLGKEIHGYVLRNHIELSTG------VGSALISMYSGCDSLEVAC 554

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  ++   RDV  W  +I + +Q+G + +AL L  +M   +  V+ N  T+  AL AC
Sbjct: 555 SVFSELS--TRDVVVWNSIISACAQSGRSVNALDLLREMNLSN--VEVNTVTMVSALPAC 610

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           ++LAALR G++IH +++R   +    F+ N LIDMY R G I  +R +FD + QR++VSW
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDT-CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 669

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
             +++ YGMHG G  A   F   R  GL P+ +TF  LL ACSHSG++++G KYF  M  
Sbjct: 670 NVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKT 729

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           E+ +    E YAC+VDLL RA + +E +E IE MP EP   +W +LL  CRIH N +L E
Sbjct: 730 EYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAE 789

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
            AA  L ELE +  G+Y L++NIY+ AGRW+D A+IR LMK  GV K PGCSW++ K   
Sbjct: 790 YAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKL 849

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
            +F VGD +HP    + E ++G   ++              DVD++EK   L  HSEK+A
Sbjct: 850 HSFVVGDTSHP----LMEQISGKDGKL--------------DVDEDEKEFSLCGHSEKIA 891

Query: 772 LAYGILTTAPGTPIRITKNLRI 793
           LA+G+++T  GTP+RI KNLR+
Sbjct: 892 LAFGLISTTXGTPLRIIKNLRV 913


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/721 (39%), Positives = 415/721 (57%), Gaps = 34/721 (4%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           AF LF ++   G   + + F  VLK    +  +  G  VH  +   G+ SN F+  AL+ 
Sbjct: 30  AFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALID 89

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
            Y+    +S AR++FDE+      D+VSW  ++A+YA++      L  F++M    +V G
Sbjct: 90  AYSVSGCVSMAREVFDEISSK---DMVSWTGMIASYAENDCFSEALEFFSQM----RVAG 142

Query: 239 ---DGVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
              +  +    L AC  L  +  GK   C ++   K  +ER    D+     ++  Y+R 
Sbjct: 143 FKPNNFTFAGVLKACLGLQNFDAGKTVHCSVL---KTNYER----DLYVGVGLLELYTRC 195

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  +DA+  F  M     K +V+ WS +I+ +AQ G   +AL++F QM+   + PN  T 
Sbjct: 196 GDNDDAWRAFGDMP----KNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTF 251

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L   A + +L L K  H + +K  LS D      + V NAL+  YAKC  ++ +  +
Sbjct: 252 SSVLQASADIESLDLSKTIHGHALKAGLSTD------VFVSNALMACYAKCGCIEQSMEL 305

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+A++ +N DV +W  +I SY Q G    AL+LF  M +    V+    T S  L ACA 
Sbjct: 306 FEALSDRN-DV-SWNTIIVSYVQLGDGERALSLFSNMLRYQ--VQATEVTYSSILRACAT 361

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           LAAL  G Q+H    +  Y   +  V N LIDMY++ G I  AR +FD L  R+ VSW +
Sbjct: 362 LAALELGLQVHCLTAKTIYGQDVA-VGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNA 420

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ GY MHGLG +A   F+ M++    PD +TF+ +L ACS++G +D+G +YF SM +++
Sbjct: 421 IICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDY 480

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    EHY C+V L+GR+  LD+AV+ IE +P EP+ +IW ALL  C IH +VELG ++
Sbjct: 481 GIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRIS 540

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A R+LELE   + S+ LLSNIYA A RW +VA +R  MK  GVKK PG SW++ +     
Sbjct: 541 AQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHC 600

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F V D +H   + I  +L  L  + +  GY PQ +  L DV+D+EK  LL+ HSE+LALA
Sbjct: 601 FTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALA 660

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G++    G PIRI KNLRIC DCHS I  IS I+  +II+RD NRFHHF+ GSC+C  Y
Sbjct: 661 FGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADY 720

Query: 834 W 834
           W
Sbjct: 721 W 721



 Score =  179 bits (454), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 221/472 (46%), Gaps = 30/472 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI AY      S A  +   IS     +  W  +I           A   F QM   G+ 
Sbjct: 87  LIDAYSVSGCVSMAREVFDEISSK--DMVSWTGMIASYAENDCFSEALEFFSQMRVAGFK 144

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ +TF  VLKAC  L +   G +VH  +  + ++ +++V   L+ +Y RC     A + 
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRA 204

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F +M +    D++ W+ +++ +AQSG +E  L +F +M     +  +  +  + L A A 
Sbjct: 205 FGDMPKN---DVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIP-NQFTFSSVLQASAD 260

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           + +    K            +     DV   NA++  Y++ G  E +  LF+ +   N  
Sbjct: 261 IESLDLSKTI-----HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRN-- 313

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              V+W+ +I  Y Q G G  AL +F  M    ++   VT  S+L  CA++ AL LG + 
Sbjct: 314 --DVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQV 371

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HC T K +      +  D+ V NALIDMYAKC S+  AR MFD +    RD  +W  +I 
Sbjct: 372 HCLTAKTI------YGQDVAVGNALIDMYAKCGSIKDARFMFDMLDL--RDKVSWNAIIC 423

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            YS +G   +A+ +F  M  ++   KP+  T    L AC+    L  G+Q   +    Q 
Sbjct: 424 GYSMHGLGVEAIKMFNLM--KETKCKPDELTFVGVLSACSNTGRLDEGKQY--FTSMKQD 479

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
             + P + +  C++ +  RSG++D A    +++  + +V+ W +L+    +H
Sbjct: 480 YGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIH 531



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
           ++FD +  +N    ++  +I  Y+Q+    +A  LF ++  +   + P  FT    L+  
Sbjct: 1   MVFDEMPERN--TVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVS 58

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
              A L  GR +H  VL+  Y     F+   LID YS SG +  AR VFD +  +++VSW
Sbjct: 59  MEWAEL--GRIVHGCVLKVGYGS-NTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSW 115

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           T ++  Y  +    +A   F QMR  G  P+  TF  +L AC        GL+ FD+
Sbjct: 116 TGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNFDA 165


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/717 (38%), Positives = 413/717 (57%), Gaps = 26/717 (3%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           AF LF  M   GW   ++T   VL+ C  L   + G  +H  +  +GF+ NVFV   L+ 
Sbjct: 146 AFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVD 205

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA+C  +S A  LF  + +    + V W  +V  YAQ+GD    +  F  M     V+ 
Sbjct: 206 MYAKCKCVSEAEFLFKGL-EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQ-GVEC 263

Query: 239 DGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
           +  +    L+AC+S+     G+Q  G +   K  F      +V   +A+V  Y++ G  +
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFI--VKSGFG----SNVYVQSALVDMYAKCGDLK 317

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           +A  + + M  ++V    V+W++++ G+ + G   EAL +F+ M    ++ +  T  S+L
Sbjct: 318 NAKNMLETMEDDDV----VSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVL 373

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
           + C  VG++   K  H   IK          +  +V NAL+DMYAK   +D A  +F+ +
Sbjct: 374 N-CCVVGSIN-PKSVHGLIIKT------GFENYKLVSNALVDMYAKTGDMDCAYTVFEKM 425

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  DV +WT ++  Y+QN    ++L +F  M  +   V P+ F ++  L ACA L  L
Sbjct: 426 LEK--DVISWTSLVTGYAQNNSHEESLKIFCDM--RVTGVNPDQFIVASILSACAELTLL 481

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
            FG+Q+H   +++        V N L+ MY++ G +D A  +F +++ ++V++WT+++ G
Sbjct: 482 EFGKQVHLDFIKSGLRWSQS-VYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVG 540

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           Y  +G G  +   +D M   G  PD +TF+ LL+ACSH+G+VD+G KYF  M+K +GI  
Sbjct: 541 YAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKP 600

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             EHYAC++DL GR+ +LDEA +L++ M ++P   +W +LL+ CR+H N+EL E AA  L
Sbjct: 601 GPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNL 660

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
            ELE      Y +LSN+Y+ + +W DVA+IR LMK  G+ K PGCSW++      TF   
Sbjct: 661 FELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISD 720

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           DR HP+  +IY  +  ++ RIK  GYVP  SF+LHD+D E K   L  HSEKLA+A+G+L
Sbjct: 721 DRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLL 780

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              P  PIRI KNLR+CGDCHSA+ +IS +    IILRDSN FHHF+EG C+C  YW
Sbjct: 781 AAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 194/389 (49%), Gaps = 35/389 (8%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G + +A+K+F++M  KD  SWN M++ Y  +G   +A  LF     ++        S+
Sbjct: 77  KSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW----SS 132

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I+GY + G   EA D+FR M+  G + +  TL S+L  C+S+G +  G+  H + +K  
Sbjct: 133 IISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVK-- 190

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                    ++ V+  L+DMYAKCK V  A  +F  +    ++   WT M+  Y+QNG  
Sbjct: 191 ----NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDG 246

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A+  F  M  Q   V+ N +T    L AC+ + A  FG Q+H +++++ +   + +V 
Sbjct: 247 YKAVEFFRYMHAQG--VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNV-YVQ 303

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           + L+DMY++ GD+  A+ + + ++  +VVSW SLM G+  HGL ++A   F  M    + 
Sbjct: 304 SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMK 363

Query: 561 PDGVTFLVLLYAC---------SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            D  TF  +L  C          H  ++  G + +  +S              +VD+  +
Sbjct: 364 IDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN------------ALVDMYAK 411

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              +D A  + E M +E   I W +L+ G
Sbjct: 412 TGDMDCAYTVFEKM-LEKDVISWTSLVTG 439



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 251/516 (48%), Gaps = 59/516 (11%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           S+H    +S ++S ++  N L+   ++   ++ AR+LFD+M Q    D  SWNT++++Y 
Sbjct: 53  SIHTTTAAS-YES-IYQTNQLLNQLSKSGQVNDARKLFDKMPQK---DEYSWNTMISSYV 107

Query: 216 QSGDAEGGLMLFA---------------------------RMTGDVKVQG---DGVSLVN 245
             G       LF                             +   ++++G      +L +
Sbjct: 108 NVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGS 167

Query: 246 ALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
            L  C+SLG    G+   G +   K  FE     +V     +V  Y++     +A  LFK
Sbjct: 168 VLRVCSSLGLIQTGEMIHGFV--VKNGFE----GNVFVVTGLVDMYAKCKCVSEAEFLFK 221

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            +  E  + N V W+A++ GYAQ G G++A++ FR M   G+E N  T  ++L+ C+SV 
Sbjct: 222 GL--EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVL 279

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           A   G++ H + +K           ++ V +AL+DMYAKC  +  A+ M + +  ++ DV
Sbjct: 280 ARCFGEQVHGFIVK------SGFGSNVYVQSALVDMYAKCGDLKNAKNMLETM--EDDDV 331

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +W  ++  + ++G   +AL LF  M  ++  +    F    +++ C  + ++   + +H
Sbjct: 332 VSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFP---SVLNCCVVGSIN-PKSVH 387

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
             +++  +E     V+N L+DMY+++GD+D A  VF+ + +++V+SWTSL+TGY  +   
Sbjct: 388 GLIIKTGFENY-KLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSH 446

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           +++   F  MR  G+ PD      +L AC+   +++ G +      K  G+      Y  
Sbjct: 447 EESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNS 505

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +V +  +   LD+A  +   M ++   I W A++ G
Sbjct: 506 LVAMYAKCGCLDDADAIFVSMQVKDV-ITWTAIIVG 540


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/795 (35%), Positives = 451/795 (56%), Gaps = 34/795 (4%)

Query: 43  LLRQCKSLTQVYLIHQQIIV-QNLTHVPPS-HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L R C +L     +H +++V + + +V  S  L+  Y      + A      I      V
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR--DV 117

Query: 101 FWWNALIRRAVRLRLPDNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           + WN +I    R        R F L M+  G  PD  TFP VLKAC  +     G+ +H 
Sbjct: 118 YAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHC 174

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +    GF  +V+V  +L+ +Y+R   +  AR LFDEM    + D+ SWN +++ Y QSG+
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM---PVRDMGSWNAMISGYCQSGN 231

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
           A+  L L   +        D V++V+ LSAC   G ++RG    +   +  +   ++ + 
Sbjct: 232 AKEALTLSNGLRA-----MDSVTVVSLLSACTEAGDFNRG----VTIHSYSIKHGLESEL 282

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            VS N ++  Y+  G   D   +F +M   ++    ++W+++I  Y        A+ +F+
Sbjct: 283 FVS-NKLIDLYAEFGRLRDCQKVFDRMYVRDL----ISWNSIIKAYELNEQPLRAISLFQ 337

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M+   ++P+ +TL+SL S  + +G +   +    +T+++     G   +D+ + NA++ 
Sbjct: 338 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK-----GWFLEDITIGNAVVV 392

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAK   VD AR +F+ +   N DV +W  +I  Y+QNG A++A+ ++  M +++  +  
Sbjct: 393 MYAKLGLVDSARAVFNWLP--NTDVISWNTIISGYAQNGFASEAIEMYNIM-EEEGEIAA 449

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N  T    L AC++  ALR G ++H  +L+N   + + FV   L DMY + G ++ A  +
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV-FVVTSLADMYGKCGRLEDALSL 508

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  + + N V W +L+  +G HG G+KA   F +M  EG+ PD +TF+ LL ACSHSG+V
Sbjct: 509 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 568

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D+G   F+ M  ++GI+   +HY C+VD+ GRA +L+ A++ I+ M ++P   IW ALL+
Sbjct: 569 DEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLS 628

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR+H NV+LG++A+  L E+E E  G + LLSN+YA+AG+W+ V  IRS+    G++K 
Sbjct: 629 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG S ++       F+ G++THP  +++Y  L  L  ++K +GYVP   F L DV+D+EK
Sbjct: 689 PGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEK 748

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             +L  HSE+LA+A+ ++ T   T IRI KNLR+CGDCHS   FIS I   EII+RDSNR
Sbjct: 749 EHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 808

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK G C+C  YW
Sbjct: 809 FHHFKNGVCSCGDYW 823


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/817 (36%), Positives = 449/817 (54%), Gaps = 43/817 (5%)

Query: 31  VTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSP 85
            TT+P IK +SLLL+ C    +L    L+H ++I   L    V  + LI  Y        
Sbjct: 34  TTTSPLIK-SSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWEN 92

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM---RRGWHPDEYTFPFVL 142
           ALS+ + +      +  W+A+I       +   A   FL M+   R   +P+EY F  +L
Sbjct: 93  ALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALL 152

Query: 143 KACGELPSSRCGSSVHAVICSSG-FDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPG 200
           ++C        G ++ A +  +G FDS+V V  AL+ M+ +    +  AR +FD+M    
Sbjct: 153 RSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHK- 211

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++V+W  ++  Y+Q G  +  + LF R+    +   D  +L + LSAC  L  +S GK
Sbjct: 212 --NLVTWTLMITRYSQLGLLDDAVDLFCRLLVS-EYTPDKFTLTSLLSACVELEFFSLGK 268

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q         V       DV     +V  Y++  + E++  +F  M   NV    ++W+A
Sbjct: 269 QLHSW-----VIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV----MSWTA 319

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I+GY Q     EA+ +F  M    + PN  T  S+L  CAS+    +GK+ H  TIK  
Sbjct: 320 LISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLG 379

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           LS          V N+LI+MYA+  +++ AR  F+ +  KN         + SY+    A
Sbjct: 380 LSTINC------VGNSLINMYARSGTMECARKAFNILFEKN---------LISYNTAADA 424

Query: 441 NDALALFPQMFQQD---KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           N       + F  +     V  + FT +C L   A +  +  G QIHA ++++ +   + 
Sbjct: 425 NAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLC 484

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            + N LI MYS+ G+ + A  VF+++  RNV++WTS+++G+  HG   KA   F +M + 
Sbjct: 485 -INNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEI 543

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ P+ VT++ +L ACSH G++D+  K+F+SM     IS R EHYAC+VDLLGR+  L E
Sbjct: 544 GVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLE 603

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A+E I  MP +   ++W   L  CR+H N +LGE AA ++LE E     +Y LLSN+YA+
Sbjct: 604 AIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYAS 663

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            GRW DVA +R  MK   + K  G SW++       F VGD +HPQ++KIY+ L  L  +
Sbjct: 664 EGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALK 723

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           IK +GY+P T F LHDV+DE+K   LF+HSEK+A+AY +++T    PIR+ KNLR+CGDC
Sbjct: 724 IKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDC 783

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+AI +IS++   EI++RD+NRFHH K+G C+C  YW
Sbjct: 784 HTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/719 (36%), Positives = 410/719 (57%), Gaps = 68/719 (9%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F  N +++ +A+   L  AR++FDE+ QP   D VSW T++  Y   G  +  +  F RM
Sbjct: 80  FSWNTILSAHAKAGNLDSARRVFDEIPQP---DSVSWTTMIVGYNHLGLFKSAVHAFLRM 136

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGM 264
                +     +  N L++CA+      GK+                          CG 
Sbjct: 137 VSS-GISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
              AK VF+RM++KD  +WN M++ + +   F+ A ALF +M   ++    V+W+++I G
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDI----VSWNSIITG 251

Query: 325 YAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK----- 378
           Y  +G+   AL+ F  M +   L+P+  TL S+LS CA+  +L LGK+ H + ++     
Sbjct: 252 YCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDI 311

Query: 379 ----------------------RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
                                 R++ + G+   +++   +L+D Y K   +D AR +FD+
Sbjct: 312 AGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDS 371

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +  K+RDV  WT MI  Y+QNG  +DAL LF  M ++    KPN +TL+  L   + LA+
Sbjct: 372 L--KHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGP--KPNNYTLAAVLSVISSLAS 427

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLM 535
           L  G+Q+HA  +R + E+    V N LI MYSRSG I  AR +F+++   R+ ++WTS++
Sbjct: 428 LDHGKQLHAVAIRLE-EVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
                HGLG++A   F++M +  L PD +T++ +L AC+H G+V+QG  YF+ M     I
Sbjct: 487 LSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNI 546

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
              + HYAC++DLLGRA  L+EA   I  MP+EP  + W +LL+ CR+H  V+L ++AA 
Sbjct: 547 EPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAE 606

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           +LL ++    G+Y  L+N  +  G+W+D A++R  MK   VKK  G SWVQ K     F 
Sbjct: 607 KLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFG 666

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
           V D  HPQ   IY +++ + + IK MG++P T+  LHD++ E K  +L  HSEKLA+A+ 
Sbjct: 667 VEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFA 726

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++ T   T +RI KNLR+C DCHSAI +IS+++  EII+RD+ RFHHFK+GSC+C+ YW
Sbjct: 727 LINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 156/524 (29%), Positives = 245/524 (46%), Gaps = 85/524 (16%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P SV W   +I     L L  +A   FL+M+  G  P ++TF  VL +C    +   G
Sbjct: 106 PQPDSVSW-TTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVG 164

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARC----------------DTLSY---------- 188
             VH+ +   G    V V N+L+ MYA+C                DT ++          
Sbjct: 165 KKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQF 224

Query: 189 -----ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
                A  LFD+M  P   DIVSWN+I+  Y   G     L  F+ M     ++ D  +L
Sbjct: 225 CQFDLALALFDQMTDP---DIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTL 281

Query: 244 VNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKV 277
            + LSACA+  +   GKQ                           G +E A ++ E    
Sbjct: 282 GSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGT 341

Query: 278 K--DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              +V+++ +++ GY +IG  + A A+F  ++      +VV W+A+I GYAQ G   +AL
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR----DVVAWTAMIVGYAQNGLISDAL 397

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK--RVLSVDGSHPDDLMV 393
            +FR M   G +PN  TL ++LS  +S+ +L  GK+ H   I+   V SV         V
Sbjct: 398 VLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVS--------V 449

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NALI MY++  S+  AR +F+ I    RD  TWT MI S +Q+G  N+A+ LF +M + 
Sbjct: 450 GNALITMYSRSGSIKDARKIFNHICSY-RDTLTWTSMILSLAQHGLGNEAIELFEKMLRI 508

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSG 511
           +  +KP+  T    L AC  +  +  G+    + L      + P  ++  C+ID+  R+G
Sbjct: 509 N--LKPDHITYVGVLSACTHVGLVEQGKSY--FNLMKNVHNIEPTSSHYACMIDLLGRAG 564

Query: 512 DIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            ++ A     N+  + +VV+W SL++   +H   D A  A +++
Sbjct: 565 LLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKL 608



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 62/108 (57%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           ++ G    A+ L ++  +   F  N ++  ++++G++D+AR VFD + Q + VSWT+++ 
Sbjct: 59  VKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIV 118

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           GY   GL   A  AF +M   G++P   TF  +L +C+ +  +D G K
Sbjct: 119 GYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKK 166


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/704 (38%), Positives = 420/704 (59%), Gaps = 28/704 (3%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQL 192
           D +TFP +L+A  + P +   + +HA     G    + F   AL+  Y R   +  A + 
Sbjct: 70  DAFTFPPLLRAA-QGPGT--AAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDEM      D+ +WN +++   ++  A   + LF RM  +  V GD V++ + L  C  
Sbjct: 127 FDEMRHR---DVPAWNAMLSGLCRNARAAEAVGLFGRMVME-GVAGDAVTVSSVLPMCVL 182

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           LG   R     M   A K        ++   NAM+  Y ++G  E+   +F  M   ++ 
Sbjct: 183 LG--DRALALAMHLYAVK---HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDL- 236

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              VTW+++I+G+ Q G    A+++F  M+  G+ P+V+TL+SL S  A  G +  G+  
Sbjct: 237 ---VTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSV 293

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HCY ++R   V      D++  NA++DMYAK   ++ A+ MFD++    RD  +W  +I 
Sbjct: 294 HCYMVRRGWDVG-----DIIAGNAIVDMYAKLSKIEAAQRMFDSMPV--RDAVSWNTLIT 346

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y QNG A++A+ ++  M Q+ + +KP   T    L A + L AL+ G ++HA  ++   
Sbjct: 347 GYMQNGLASEAIHVYDHM-QKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGL 405

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
            + + +V  C+ID+Y++ G +D A ++F+   +R+   W ++++G G+HG G KA   F 
Sbjct: 406 NLDV-YVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFS 464

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           QM++EG++PD VTF+ LL ACSH+G+VDQG  +F+ M   +GI   A+HYAC+VD+ GRA
Sbjct: 465 QMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRA 524

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            +LD+A + I  MP++P   IW ALL  CRIH NVE+G++A+  L EL+ +  G Y L+S
Sbjct: 525 GQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMS 584

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR--THPQSQKIYEI 730
           N+YA  G+W  V  +RSL++   ++K PG S ++ K     F+ G++   HPQ ++I   
Sbjct: 585 NMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRE 644

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L+ +I+++GYVP  SF L DV+++EK  +L  HSE+LA+A+GI+ T P TP+ I KN
Sbjct: 645 LLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKN 704

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+CGDCH+A  +IS I   EII+RDSNRFHHFK+G C+C  +W
Sbjct: 705 LRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 219/474 (46%), Gaps = 34/474 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA++    R      A  LF +M+  G   D  T   VL  C  L       ++H    
Sbjct: 138 WNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAV 197

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G D  +FVCNA++ +Y +   L   R++FD M      D+V+WN+I++ + Q G    
Sbjct: 198 KHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSR---DLVTWNSIISGHEQGGQVAS 254

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMKVKDV 280
            + +F  M  D  V  D ++L++  SA A  G    G+   C M+           V D+
Sbjct: 255 AVEMFCGMR-DSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG------WDVGDI 307

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           ++ NA+V  Y+++   E A  +F  M       + V+W+ +I GY Q G   EA+ V+  
Sbjct: 308 IAGNAIVDMYAKLSKIEAAQRMFDSMPVR----DAVSWNTLITGYMQNGLASEAIHVYDH 363

Query: 341 MQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           MQ   GL+P   T VS+L   + +GAL  G   H  +IK  L++      D+ V   +ID
Sbjct: 364 MQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNL------DVYVGTCVID 417

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YAKC  +D A ++F+   P+ R    W  +I     +G    AL+LF QM Q+   + P
Sbjct: 418 LYAKCGKLDEAMLLFEQ-TPR-RSTGPWNAVISGVGVHGHGAKALSLFSQMQQEG--ISP 473

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTAR 517
           +  T    L AC+    +  GR    + +      + P   +  C++DM+ R+G +D A 
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNF--FNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAF 531

Query: 518 VVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
               N+  + +   W +L+    +HG  +    A   + +  L P  V + VL+
Sbjct: 532 DFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFE--LDPKNVGYYVLM 583


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/661 (40%), Positives = 391/661 (59%), Gaps = 40/661 (6%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N +++ +A    +S AR  FD   +    D VSWN ++AAY ++G  E    LF     +
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEK---DAVSWNGMLAAYVRNGRVEEARGLF-----N 186

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            + + D +S    +S            Q G M EA+++F+RM  +DVVSWN MV+GY+R 
Sbjct: 187 SRTEWDVISWNALMSGYV---------QWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 237

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   +A  LF      +V     TW+AV++GYAQ G   EA  VF  M     E N V+ 
Sbjct: 238 GDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSW 289

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            ++++  A +   ++ +    + +    +V           N ++  YA+   ++ A+ +
Sbjct: 290 NAMVA--AYIQRRMMDEAKELFNMMPCRNVAS--------WNTMLTGYAQAGMLEEAKAV 339

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +  K  D  +W  M+ +YSQ G + + L LF +M +  + V  +AF  +C L  CA 
Sbjct: 340 FDTMPQK--DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF--ACVLSTCAD 395

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +AAL  G Q+H  ++R  Y +   FV N L+ MY + G+++ AR  F+ +++R+VVSW +
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGC-FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNT 454

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ GY  HG G +A   FD MR     PD +T + +L ACSHSG+V++G+ YF SM  +F
Sbjct: 455 MIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 514

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           G++A+ EHY C++DLLGRA RL EA +L++ MP EP   +W ALL   RIH N ELG  A
Sbjct: 515 GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 574

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A ++ ELE E  G Y LLSNIYA++G+W+D  ++R +M+  GVKK PG SW++ +    T
Sbjct: 575 AEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHT 634

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  GD  HP+ +KIY  L  L  R+K  GYV  T   LHDV++EEK  +L  HSEKLA+A
Sbjct: 635 FSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVA 694

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           YGIL   PG PIR+ KNLR+CGDCH+A  +IS I    I+LRDSNRFHHF+ GSC+C  Y
Sbjct: 695 YGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDY 754

Query: 834 W 834
           W
Sbjct: 755 W 755



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 211/437 (48%), Gaps = 60/437 (13%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD--------- 219
           +V   NALM+ Y +   +S AR+LFD M  PG  D+VSWN +V+ YA+ GD         
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRM--PGR-DVVSWNIMVSGYARRGDMVEARRLFD 248

Query: 220 -----------------AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
                            A+ G++  AR   D   + + VS  NA+ A           Q 
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW-NAMVAAYI--------QR 299

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
            MM+EAK++F  M  ++V SWN M+TGY++ G  E+A A+F  M Q+    + V+W+A++
Sbjct: 300 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAML 355

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A Y+Q G   E L +F +M  CG   N      +LS CA + AL  G + H   I+    
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V         V NAL+ MY KC +++ AR  F+ +  + RDV +W  MI  Y+++G   +
Sbjct: 416 V------GCFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKE 467

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVAN 501
           AL +F  M  +    KP+  TL   L AC+    +  G   + Y + + + +   P    
Sbjct: 468 ALEIFDMM--RTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHHDFGVTAKPEHYT 524

Query: 502 CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           C+ID+  R+G +  A  +  ++  + +   W +L+    +H   +    A +++ +  L 
Sbjct: 525 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LE 582

Query: 561 PDGVTFLVLL---YACS 574
           P+     VLL   YA S
Sbjct: 583 PENAGMYVLLSNIYASS 599



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 23/261 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +    +   +LF++M R G   +   F  VL  C ++ +  CG  +H  + 
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 410

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+    FV NAL+AMY +C  +  AR  F+EM +    D+VSWNT++A YA+ G  + 
Sbjct: 411 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER---DVVSWNTMIAGYARHGFGKE 467

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M      + D ++LV  L+AC+           G++E+    F  M     V+
Sbjct: 468 ALEIFDMMR-TTSTKPDDITLVGVLAACS---------HSGLVEKGISYFYSMHHDFGVT 517

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  M+    R G   +A  L K M  E    +   W A++   A R H +  L  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP---DSTMWGALLG--ASRIHRNPELGR 572

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +   LEP    +  LLS
Sbjct: 573 SAAEKIFELEPENAGMYVLLS 593



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 197/470 (41%), Gaps = 71/470 (15%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM-RQENVKLNVVTWS 319
           + G + +A+++F  M  +   ++NAM+ GYS  G    A +LF+ + R +N   N +  +
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI-- 377
             ++       G     +F +M       + VT   ++S  A+ G + L +  H + +  
Sbjct: 110 LAVSSSLADARG-----LFDEMPV----RDSVTYNVMISSHANHGLVSLAR--HYFDLAP 158

Query: 378 -KRVLSVDG-------------------SHPD-DLMVINALIDMYAKCKSVDVARVMFDA 416
            K  +S +G                   S  + D++  NAL+  Y +   +  AR +FD 
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +    RDV +W +M+  Y++ G   +A  LF      D     + FT +  +   A+   
Sbjct: 219 M--PGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPVRDVFTWTAVVSGYAQNGM 270

Query: 477 LRFGRQI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           L   R++  A   RN          N ++  Y +   +D A+ +F+ +  RNV SW +++
Sbjct: 271 LEEARRVFDAMPERNAVSW------NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TGY   G+ ++A   FD M ++    D V++  +L A S  G  ++ L+ F  M +  G 
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGR-CGE 379

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG----- 650
                 +AC++        L+  ++L          +I      GC +  N  L      
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQL-------HGRLIRAGYGVGCFV-GNALLAMYFKC 431

Query: 651 ---ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
              E A N   E+E     S+  +   YA  G  K+   I  +M+ T  K
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 55/230 (23%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEM---------------FQPGIC--------- 202
           + N    NA++A Y +   +  A++LF+ M                Q G+          
Sbjct: 283 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 203 ----DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               D VSW  ++AAY+Q G +E  L LF  M G      +  +    LS CA +     
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM-GRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 259 GKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           G Q                          CG ME+A+  FE M+ +DVVSWN M+ GY+R
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            G  ++A  +F  MR  + K + +T   V+A  +  G   + +  F  M 
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 511


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/775 (37%), Positives = 416/775 (53%), Gaps = 107/775 (13%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP---------------- 199
           +VHA + +SGF    ++ N L+ +Y +   L  A  LFDE+ QP                
Sbjct: 36  TVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAG 95

Query: 200 --------------GICDIVSWNTIVAAYAQSGDAEGGLMLF------------------ 227
                         GI D V +N ++  Y+ + D  G + LF                  
Sbjct: 96  NSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSV 155

Query: 228 ----ARMTGDVK----------VQGDG--VSLVNAL-SACASLGTWSRGKQCGMMEEAKK 270
               A +  D K            G G   S++NAL S      +        +M  A+K
Sbjct: 156 LGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARK 215

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           +F+ M  +D +SW  M+ GY R G  + A      M +   KL VV W+A+I+GY   G 
Sbjct: 216 LFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTE---KL-VVAWNAMISGYVHHGF 271

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL--SVDGSHP 388
             EAL++FR+M   G++ +  T  S+LS CA+ G  L GK+ H Y ++     S+D S  
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS-- 329

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------------------- 421
             L V NAL  +Y KC  VD AR +F+ +  K+                           
Sbjct: 330 --LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEM 387

Query: 422 --RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
             R++ TWTVMI   +QNG   ++L LF +M  + +  +P  +  + A++ACA LAAL  
Sbjct: 388 PERNLLTWTVMISGLAQNGFGEESLKLFNRM--KSEGFEPCDYAFAGAIIACAWLAALMH 445

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           GRQ+HA ++R  ++  +    N LI MY++ G ++ A  +F  +   + VSW +++   G
Sbjct: 446 GRQLHAQLVRLGFDSSLS-AGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALG 504

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
            HG G +A   F+ M KE + PD +TFL +L  CSH+G+V++G +YF SMS  +GI    
Sbjct: 505 QHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGE 564

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           +HYA ++DLL RA +  EA ++IE MP+EP P IW ALL GCRIH N++LG  AA RL E
Sbjct: 565 DHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFE 624

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           L  + DG+Y LLSN+YA  GRW DVA++R LM+  GVKK PGCSW++ +     F V D 
Sbjct: 625 LMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDI 684

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
            HP+ Q +Y  L  L  +++ +GY+P T F LHD++ E+K  +L  HSEKLA+ +G+L  
Sbjct: 685 VHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKL 744

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             G  +R+ KNLRICGDCH+A  F+S ++  EI++RD  RFHHFK G C+C  YW
Sbjct: 745 PLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 246/575 (42%), Gaps = 104/575 (18%)

Query: 47  CKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNAL 106
           CKS   V   H    ++    V  + LIAA+ S    + A  +             +NA+
Sbjct: 61  CKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAM 120

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL-PSSRCGSSVHAVICSSG 165
           I           A  LF  ++R G+ PD +TF  VL A   +    +    +H  +  SG
Sbjct: 121 ITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSG 180

Query: 166 FDSNVFVCNALMAMYARC---------DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
                 V NAL++++ +C           ++ AR+LFDEM +    D +SW T++A Y +
Sbjct: 181 SGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTER---DELSWTTMIAGYVR 237

Query: 217 SGDAEGGLMLFARMTGDVKV------------------------------QGDGVSLVNA 246
           +G+ +        MT  + V                              Q D  +  + 
Sbjct: 238 NGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSV 297

Query: 247 LSACASLGTWSRGKQ------------------------------CGMMEEAKKVFERMK 276
           LSACA+ G +  GKQ                              CG ++EA++VF +M 
Sbjct: 298 LSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP 357

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           VKD+VSWNA+++GY   G  ++A + F++M +     N++TW+ +I+G AQ G G E+L 
Sbjct: 358 VKDLVSWNAILSGYVNAGRIDEAKSFFEEMPER----NLLTWTVMISGLAQNGFGEESLK 413

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F +M+  G EP        +  CA + AL+ G++ H   ++  L  D S    L   NA
Sbjct: 414 LFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVR--LGFDSS----LSAGNA 467

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI MYAKC  V+ A  +F  +     D  +W  MI +  Q+G    AL LF  M ++D L
Sbjct: 468 LITMYAKCGVVEAAHCLF--LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDIL 525

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC--------LIDMYS 508
             P+  T    L  C+    +  G   H Y     ++ +      C        +ID+  
Sbjct: 526 --PDRITFLTVLSTCSHAGLVEEG---HRY-----FKSMSGLYGICPGEDHYARMIDLLC 575

Query: 509 RSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
           R+G    A+ + + +  +     W +L+ G  +HG
Sbjct: 576 RAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHG 610



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 180/422 (42%), Gaps = 62/422 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +IA YV +     A   L  ++     V  WNA+I   V       A  +F +M   G  
Sbjct: 231 MIAGYVRNGELDAARQFLDGMTEK--LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSS----GFDSNVFVCNALMAMYARCDTLSY 188
            DE+T+  VL AC        G  VHA I  +      D ++ V NAL  +Y +C  +  
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAY-------------------------------AQS 217
           ARQ+F++M    + D+VSWN I++ Y                               AQ+
Sbjct: 349 ARQVFNQM---PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQN 405

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  E  L LF RM  +     D  +   A+ ACA L     G+Q      A+ V  R+  
Sbjct: 406 GFGEESLKLFNRMKSEGFEPCD-YAFAGAIIACAWLAALMHGRQL----HAQLV--RLGF 458

Query: 278 KDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
              +S  NA++T Y++ G  E A  LF  M      L+ V+W+A+IA   Q GHG +AL+
Sbjct: 459 DSSLSAGNALITMYAKCGVVEAAHCLFLTMPY----LDSVSWNAMIAALGQHGHGAQALE 514

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F  M    + P+ +T +++LS C+  G   L +E H Y  K +  + G  P +      
Sbjct: 515 LFELMLKEDILPDRITFLTVLSTCSHAG---LVEEGHRY-FKSMSGLYGICPGEDHYAR- 569

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG----GANDALALFPQMFQ 452
           +ID+  +      A+ M + + P       W  ++     +G    G   A  LF  M Q
Sbjct: 570 MIDLLCRAGKFSEAKDMIETM-PVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQ 628

Query: 453 QD 454
            D
Sbjct: 629 HD 630



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 144/328 (43%), Gaps = 28/328 (8%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           L  +C  + +   +  Q+ V++L  V  + +++ YV+      A S  + +     ++  
Sbjct: 339 LYWKCGKVDEARQVFNQMPVKDL--VSWNAILSGYVNAGRIDEAKSFFEEMPER--NLLT 394

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I    +    + + +LF +M   G+ P +Y F   + AC  L +   G  +HA + 
Sbjct: 395 WTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLV 454

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFDS++   NAL+ MYA+C  +  A  LF  M  P + D VSWN ++AA  Q G    
Sbjct: 455 RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTM--PYL-DSVSWNAMIAALGQHGHGAQ 511

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
            L LF  M  +  +  D ++ +  LS C+           G++EE  + F+ M       
Sbjct: 512 ALELFELMLKE-DILPDRITFLTVLSTCS---------HAGLVEEGHRYFKSMSGLYGIC 561

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  M+    R G F +A  + + M    V+     W A++AG   R HG+  L +
Sbjct: 562 PGEDHYARMIDLLCRAGKFSEAKDMIETM---PVEPGPPIWEALLAGC--RIHGNMDLGI 616

Query: 338 FRQMQFCGLEPNVVTLVSLLSGC-ASVG 364
               +   L P       LLS   A+VG
Sbjct: 617 QAAERLFELMPQHDGTYVLLSNMYATVG 644



 Score = 40.0 bits (92), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 34/126 (26%)

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------------- 525
            R +HA+++ + ++    ++ N LID+Y +S D+ +A  +FD ++Q              
Sbjct: 34  ARTVHAHMIASGFKPR-GYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 92

Query: 526 -------------------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
                              R+ V + +++TGY  +  G  A   F  + + G  PD  TF
Sbjct: 93  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152

Query: 567 LVLLYA 572
             +L A
Sbjct: 153 TSVLGA 158


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/727 (38%), Positives = 396/727 (54%), Gaps = 80/727 (11%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           NVF  N+L+++YA+   L+ AR +F EM +    D VSW  +V    + G     + +F 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPER---DPVSWTVMVVGLNRVGRFGEAIKMFL 151

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            M  D  +     +L N LS+CA+      G++                          C
Sbjct: 152 DMVTD-GLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKC 210

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G  E A+ VFERM  + V SWNAMV+  + +G  + A +LF+ M    +    V+W+AVI
Sbjct: 211 GDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTI----VSWNAVI 266

Query: 323 AGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           AGY Q G   +AL  F R + +  + P+  T+ S+LS CA++G + +GK+ H Y ++  +
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRM 326

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVAR------------------------------ 411
              G       V NALI MYAK  SV+ AR                              
Sbjct: 327 PYIGQ------VTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK 380

Query: 412 ---VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
               MFD ++  NRDV  WT MI  Y QNG  ++A+ LF  M +     +PN++T++  L
Sbjct: 381 HAREMFDVMS--NRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGP--EPNSYTVAAVL 436

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-N 527
             CA LA L +G+QIH   +R+  E     V+N ++ MY+RSG +  AR VFD +  R  
Sbjct: 437 SVCASLACLEYGKQIHCKAIRSLQEQ-SSSVSNSIVTMYARSGSLPWARRVFDRVHWRKE 495

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
            V+WTS++     HGLG+ A   F++M + G+ PD +TF+ +L AC+H G VD+G +YF 
Sbjct: 496 TVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQ 555

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            +  + GI     HYAC+VDLL RA    EA E I+ MP+EP  I W +LL+ CR+H N 
Sbjct: 556 QLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNA 615

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           +L ELAA +LL ++    G+Y+ LSN+Y+  GRW D A+I    K   VKK  G SW   
Sbjct: 616 DLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHI 675

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
                 F   D  HPQ   +Y   A +   IK  G+VP     LHDVDDE K ++L  HS
Sbjct: 676 GNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHS 735

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLA+A+G+++T   T +RI KNLR+C DCH+AI FIS + + EIILRD+ RFHHFK+G 
Sbjct: 736 EKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGF 795

Query: 828 CTCKGYW 834
           C+CK YW
Sbjct: 796 CSCKDYW 802


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/733 (36%), Positives = 424/733 (57%), Gaps = 27/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   ++  +   A  LF  M R     + YT   VL+ C EL     G  +HA + 
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SG + N+  CNAL+ MY +C  +  A ++F E+ +    D +SWN++++ Y Q+G    
Sbjct: 294 KSGSEVNI-QCNALLVMYTKCGRVDSALRVFREIDEK---DYISWNSMLSCYVQNGLYAE 349

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +   + M      Q D   +V+  SA   LG    GK+      A  + +R+   D   
Sbjct: 350 AIEFISEMLRG-GFQPDHACIVSLSSAVGHLGWLLNGKEV----HAYAIKQRLD-SDTQV 403

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N ++  Y +    E +  +F +MR ++     ++W+ +I  YAQ     EAL++FR+ Q
Sbjct: 404 GNTLMDMYMKCRYIEYSAHVFDRMRIKDH----ISWTTIITCYAQSSRHIEALEIFREAQ 459

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G++ + + + S+L  C+ +  +LL K+ HCY I+  L        DL+V N +ID+Y 
Sbjct: 460 KEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL-------DLVVKNRIIDIYG 512

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  V  +  MF+ +  + +D+ TWT MI  Y+ +G  N+AL LF +M   D  V+P++ 
Sbjct: 513 ECGEVYHSLKMFETV--EQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTD--VQPDSV 568

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            L   L A   L++L  G+++H +++R  + M    V++ L+DMYS  G +  A  VF+ 
Sbjct: 569 ALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSS-LVDMYSGCGSLSGALKVFNA 627

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +K +++V WT+++   GMHG G +A   F +M + G+ PD V+FL LLYACSHS +V++G
Sbjct: 628 VKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEG 687

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             Y D M   + +    EHYAC+VDLLGR+ + +EA E I+ MP++P  ++W +LL  CR
Sbjct: 688 KCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACR 747

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H N EL  +AANRLLELE +  G+Y L+SN++A  G+W +   +R+ +   G++K P C
Sbjct: 748 VHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPAC 807

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI-KAMGYVPQTSFALHDVDDEEKGD 761
           SW++      TF   D +H  +++I   LA + +R+ K  GY   T   LHDV +EEK D
Sbjct: 808 SWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVD 867

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           +L  HSE+LA+++G++ T PG P+RI KNLR+CGDCH     +S + + +I++RD+NRFH
Sbjct: 868 VLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFH 927

Query: 822 HFKEGSCTCKGYW 834
           HF  GSC+C  +W
Sbjct: 928 HFSGGSCSCGDFW 940



 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 155/562 (27%), Positives = 274/562 (48%), Gaps = 46/562 (8%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQM---MRRGWHPDEYTFPFVLKACGELPSSR 152
           S  +VF WNALI   +       A  ++  M      G  PD  T   VLKA G     R
Sbjct: 122 SSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGR 181

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           CG  VH +    G D + FV NAL+AMYA+C  L  A ++F E+   G  D+ SWN++++
Sbjct: 182 CGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVF-ELMHDGR-DVASWNSMIS 239

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKK 270
              Q+G     L LF  M   V +  +  + V  L  C  L   + G++    +++   +
Sbjct: 240 GCLQNGMFLQALDLFRGMQRAV-LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSE 298

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           V         +  NA++  Y++ G  + A  +F+++ ++    + ++W+++++ Y Q G 
Sbjct: 299 VN--------IQCNALLVMYTKCGRVDSALRVFREIDEK----DYISWNSMLSCYVQNGL 346

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
             EA++   +M   G +P+   +VSL S    +G LL GKE H Y IK+ L        D
Sbjct: 347 YAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLD------SD 400

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
             V N L+DMY KC+ ++ +  +FD +  + +D  +WT +I  Y+Q+    +AL +F + 
Sbjct: 401 TQVGNTLMDMYMKCRYIEYSAHVFDRM--RIKDHISWTTIITCYAQSSRHIEALEIFRE- 457

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
             Q + +K +   +   L AC+ L  +   +Q+H Y +RN   +L   V N +ID+Y   
Sbjct: 458 -AQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNG--LLDLVVKNRIIDIYGEC 514

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G++  +  +F+ ++Q+++V+WTS++  Y   GL ++A   F +M+   + PD V  + +L
Sbjct: 515 GEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSIL 574

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHY------ACIVDLLGRANRLDEAVELIEG 624
            A         GL       +  G   R   +      + +VD+      L  A+++   
Sbjct: 575 GAIG-------GLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNA 627

Query: 625 MPMEPTPIIWVALLNGCRIHAN 646
           +  +   ++W A++N   +H +
Sbjct: 628 VKCKDM-VLWTAMINATGMHGH 648



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 214/461 (46%), Gaps = 28/461 (6%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF--DSNVFVCNA 175
            A RL L     G  P +  + +VL       +   G  VHA   ++G     + F+   
Sbjct: 42  QALRL-LTSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATK 100

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF--ARMTGD 233
           L+ MY +C  ++ AR LFD M       + SWN ++ AY  SG A   L ++   R++  
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSR---TVFSWNALIGAYLSSGSACEALGVYRAMRLSAA 157

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
             V  DG +L + L A    G      +CG       V   +     V+ NA++  Y++ 
Sbjct: 158 SGVAPDGCTLASVLKASGVEGD----GRCGCEVHGLAVKHGLDRSTFVA-NALIAMYAKC 212

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  + A  +F+ M       +V +W+++I+G  Q G   +ALD+FR MQ   L  N  T 
Sbjct: 213 GILDSAMRVFELMHDGR---DVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTT 269

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           V +L  C  +  L LG+E H   +K    V+       +  NAL+ MY KC  VD A  +
Sbjct: 270 VGVLQVCTELAQLNLGRELHAALLKSGSEVN-------IQCNALLVMYTKCGRVDSALRV 322

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F  I  K  D  +W  M+  Y QNG   +A+    +M +     +P+   +     A   
Sbjct: 323 FREIDEK--DYISWNSMLSCYVQNGLYAEAIEFISEMLRGG--FQPDHACIVSLSSAVGH 378

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L  L  G+++HAY ++ + +     V N L+DMY +   I+ +  VFD ++ ++ +SWT+
Sbjct: 379 LGWLLNGKEVHAYAIKQRLDSDTQ-VGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTT 437

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           ++T Y       +A   F + +KEG+  D +    +L ACS
Sbjct: 438 IITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 476 ALRFGRQIHAY-VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           A+  G Q+HA+ V     E    F+A  L+ MY + G +  AR++FD +  R V SW +L
Sbjct: 73  AVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNAL 132

Query: 535 MTGYGMHGLGDKAHWAFDQMR---KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           +  Y   G   +A   +  MR     G+APDG T   +L A    G    G +    ++ 
Sbjct: 133 IGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCE-VHGLAV 191

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           + G+         ++ +  +   LD A+ + E M        W ++++GC
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/684 (38%), Positives = 405/684 (59%), Gaps = 60/684 (8%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGI---------------CD--IVSWNTIV 211
           NV++ N +++ YA+      +  LF  M + GI               CD  ++SWN+++
Sbjct: 26  NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMI 85

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           + Y  +G  E GL ++ +M   + +  D  ++++ L  CA  GT S GK    +   K  
Sbjct: 86  SGYVSNGLTERGLGIYKQMM-YLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLA-IKSS 143

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           FER     +   N ++  YS+ G  + A  +F+KM + NV    V+W+++IAGY + G  
Sbjct: 144 FERR----INFSNTLLDMYSKCGDLDGALRVFEKMGERNV----VSWTSMIAGYTRDGWS 195

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
             A+ + +QM+  G++ +VV + S+L  CA  G+L  GK+ H Y     ++       +L
Sbjct: 196 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA------SNL 249

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V NAL+DMYAKC S++ A  +F  +  K  D+ +W  M+G                   
Sbjct: 250 FVCNALMDMYAKCGSMEGANSVFSTMVVK--DIISWNTMVGE------------------ 289

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
                +KP++ T++C L ACA L+AL  G++IH Y+LRN Y      VAN L+D+Y + G
Sbjct: 290 -----LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSS-DRHVANALVDLYVKCG 343

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            +  AR++FD +  +++VSWT ++ GYGMHG G++A   F++MR  G+ PD V+F+ +LY
Sbjct: 344 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 403

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSHSG+++QG ++F  M  +F I  + EHYAC+VDLL R   L +A + IE +P+ P  
Sbjct: 404 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDA 463

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
            IW ALL GCRI+ ++EL E  A R+ ELE E  G Y LL+NIYA A +W++V R+R  +
Sbjct: 464 TIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKI 523

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDR-THPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
              G++K PGCSW++ K     F  G+  +HP S+KI  +L  + +++K  GY P+T +A
Sbjct: 524 GKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYA 583

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           L + D+ +K   L  HSEKLA+A+G+LT  P   IR+TKNLR+CGDCH    F+S     
Sbjct: 584 LINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRR 643

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EI+LRDSNRFHHFK+G C+C+G+W
Sbjct: 644 EIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 152/345 (44%), Gaps = 83/345 (24%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN++I   V   L +    ++ QMM  G   D  T   VL  C +  +   G +VH+
Sbjct: 78  VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHS 137

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +   S F+  +   N L+ MY++C  L  A ++F++M   G  ++VSW +++A Y + G 
Sbjct: 138 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM---GERNVVSWTSMIAGYTRDGW 194

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------- 260
           ++G ++L  +M  +  V+ D V++ + L ACA  G+   GK                   
Sbjct: 195 SDGAIILLQQMEKE-GVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCN 253

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMV-------------------------- 287
                  +CG ME A  VF  M VKD++SWN MV                          
Sbjct: 254 ALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERG 313

Query: 288 ---------TGYS--------------RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                     GYS              + G    A  LF  +  +    ++V+W+ +IAG
Sbjct: 314 KEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK----DLVSWTVMIAG 369

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           Y   G+G+EA+  F +M+  G+EP+ V+ +S+L  C+  G L  G
Sbjct: 370 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 414



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 131/303 (43%), Gaps = 57/303 (18%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           AL + +++     +V  W ++I    R    D A  L  QM + G   D      +L AC
Sbjct: 167 ALRVFEKMGER--NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHAC 224

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
               S   G  VH  I ++   SN+FVCNALM MYA+C ++  A  +F  M    + DI+
Sbjct: 225 ARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMV---VKDII 281

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---- 261
           SWNT+V                       +++ D  ++   L ACASL    RGK+    
Sbjct: 282 SWNTMVG----------------------ELKPDSRTMACILPACASLSALERGKEIHGY 319

Query: 262 ----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                 CG++  A+ +F+ +  KD+VSW  M+ GY   G   +A
Sbjct: 320 ILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEA 379

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNV---VTLVS 355
            A F +MR   ++ + V++ +++   +  G   +    F  M+    +EP +     +V 
Sbjct: 380 IATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVD 439

Query: 356 LLS 358
           LLS
Sbjct: 440 LLS 442


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/767 (36%), Positives = 430/767 (56%), Gaps = 38/767 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           LI  Y   N    A  + + +   P   V  WN+LI         + A  ++ +    G 
Sbjct: 156 LIDMYCRFNDLDKARKVFEEM---PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 212

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            PD YT   VL+ACG L S   G  +H +I   G   +V V N L++MY + + L   R+
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD+M    + D VSWNT++  Y+Q G  E  + LF  M    K   D +++ + L AC 
Sbjct: 273 IFDKMV---LRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK--PDLLTITSILQACG 327

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
            LG          +E  K V + M       D  + N ++  Y++ G+   +  +F  M+
Sbjct: 328 HLGD---------LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 378

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            ++     V+W+++I  Y Q G   EA+ +F+ M+   ++P+ VT V LLS    +G L 
Sbjct: 379 CKDS----VSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLH 433

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LGKE HC   K   +       +++V N L+DMYAKC  +  +  +F+ +  K RD+ TW
Sbjct: 434 LGKELHCDLAKMGFN------SNIVVSNTLVDMYAKCGEMGDSLKVFENM--KARDIITW 485

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             +I S   +   N  L +  +M  +   V P+  T+   L  C+ LAA R G++IH  +
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRMRTEG--VTPDMATMLSILPVCSLLAAKRQGKEIHGCI 543

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
            +   E  +P V N LI+MYS+ G +  +  VF  +K ++VV+WT+L++  GM+G G KA
Sbjct: 544 FKLGLESDVP-VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 602

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
             AF +M   G+ PD V F+ +++ACSHSG+V++GL YF  M K++ I  R EHYAC+VD
Sbjct: 603 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 662

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LL R+  LD+A + I  MP++P   IW ALL+ CR+  + E+ E  + R++EL  +  G 
Sbjct: 663 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGY 722

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y L+SNIYA  G+W  V  IR  +K  G+KK PGCSW++ +     F  G +   Q +++
Sbjct: 723 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 782

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
            ++L  L   +   GY+    F LHD+D++EK D+L  HSE+LA+A+G+L T PGTP+++
Sbjct: 783 NKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQV 842

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+C DCH+   +IS I+  E+++RD+NRFH FK+G+C+C  YW
Sbjct: 843 MKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 172/647 (26%), Positives = 306/647 (47%), Gaps = 86/647 (13%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           L    + TQ++ +H  II   L H  +  + LIA Y     P+ + S+ +  SPS  +V+
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSN-NVY 81

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            WN++IR      L   A  L+ +  R    PD YTFP V+ AC  L       S+H  +
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 141

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              GF S++++ NAL+ MY R + L  AR++F+EM    + D+VSWN++++ Y  +G   
Sbjct: 142 LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM---PLRDVVSWNSLISGYNANGYWN 198

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMME-------------- 266
             L ++ R   ++ V  D  ++ + L AC  LG+   G    G++E              
Sbjct: 199 EALEIYYRFR-NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 257

Query: 267 -----------EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                      + +++F++M ++D VSWN M+ GYS++G +E++  LF +M  +      
Sbjct: 258 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ------ 311

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
                                          +P+++T+ S+L  C  +G L  GK  H Y
Sbjct: 312 ------------------------------FKPDLLTITSILQACGHLGDLEFGKYVHDY 341

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            I         +  D    N LI+MYAKC ++  ++ +F  +  K +D  +W  MI  Y 
Sbjct: 342 MIT------SGYECDTTASNILINMYAKCGNLLASQEVFSGM--KCKDSVSWNSMINVYI 393

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG  ++A+ LF +M + D  VKP++ T    L    +L  L  G+++H  + +  +   
Sbjct: 394 QNGSFDEAMKLF-KMMKTD--VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSN 450

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           I  V+N L+DMY++ G++  +  VF+N+K R++++W +++         +       +MR
Sbjct: 451 I-VVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 509

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
            EG+ PD  T L +L  CS      QG +    + K  G+ +       ++++  +   L
Sbjct: 510 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSL 568

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
             + ++ + M  +   + W AL++ C ++     G+ A     E+E+
Sbjct: 569 RNSFQVFKLMKTKDV-VTWTALISACGMYGE---GKKAVRAFGEMEA 611


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/575 (44%), Positives = 372/575 (64%), Gaps = 16/575 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG + +A+KVF+ M  +D+ SWN M++GY + G+FE A  LF KM   +      +W+A
Sbjct: 165 KCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDN----FSWTA 220

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +I+G  Q     EAL+++R MQ     + N  T+ S L+  A++ +L +GK+ H + ++ 
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L        D +V  +L+DMY KC S++ AR +FD +  + RDV +WT MI +Y +NG 
Sbjct: 281 GLD------SDEVVWCSLLDMYGKCGSIEEARYIFDKM--EERDVVSWTTMIHTYLKNGR 332

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +  ALF  +   +  + PN FT +  L ACA LAA   G+QIHAY++R  ++      
Sbjct: 333 REEGFALFRHLMNSN--IMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSF-SSA 389

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           A+ L+ MYS+ GDI+ A+ VF+ L Q ++ SWTSL+ GY  HG  DKA   F+ + K G 
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGT 449

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PDG+ F+ +L AC+H+G+VD+GL+YF S+ ++ G++   +HYACI+DLL RA +  EA 
Sbjct: 450 KPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAE 509

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I  MP++P   IW ALL GCRIH N+EL + AA  L E+E E   +Y  L+NIYA+AG
Sbjct: 510 SIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAG 569

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
              + A IR  M   G+ K+PG SW++ +     F VGD +HP+S++I E L+ L +R+K
Sbjct: 570 MRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMK 629

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
            +GYVP T+F LHDV+ E+K + L  HSEKLA+A+GI++T  GTPI++ KNLR C DCH+
Sbjct: 630 EVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHN 689

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI FIS I   +II+RDSNRFH F+ GSC+CK YW
Sbjct: 690 AIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/509 (25%), Positives = 230/509 (45%), Gaps = 64/509 (12%)

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           L + A+ +    +  R  +Q++ R   P    +  +LK C +  + + G  VHA I +SG
Sbjct: 90  LFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG 149

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
               +++ N L+ MYA+C +L  A ++FDEM    +C   SWN +++ Y + G+ E    
Sbjct: 150 -SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLC---SWNIMISGYVKGGNFEKARN 205

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLG---------------TWSRGKQCGM------ 264
           LF +M        D  S    +S C                    +S+  +C +      
Sbjct: 206 LFDKMPNR-----DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAA 260

Query: 265 ------MEEAKKV---FERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                 +   KK+     RM +  D V W +++  Y + GS E+A  +F KM +     +
Sbjct: 261 SAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEER----D 316

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           VV+W+ +I  Y + G   E   +FR +    + PN  T   +L+ CA + A  LGK+ H 
Sbjct: 317 VVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHA 376

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           Y ++       S        +AL+ MY+KC  ++ A+ +F+ I P+  D+ +WT ++  Y
Sbjct: 377 YMVRVGFDSFSS------AASALVHMYSKCGDIENAKSVFE-ILPQP-DLFSWTSLLVGY 428

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ-IHAYVLRNQYE 493
           +Q+G  + AL  F  + +     KP+       L ACA    +  G +  H+   ++   
Sbjct: 429 AQHGQHDKALHFFELLLKSG--TKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLT 486

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHW 549
             I   A C+ID+ +R+G    A  + + +  + +   W +L+ G  +HG   L  +A  
Sbjct: 487 RTIDHYA-CIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAK 545

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +  ++  E  A    T++ L    + +GM
Sbjct: 546 SLFEIEPENPA----TYVTLANIYASAGM 570



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 182/411 (44%), Gaps = 30/411 (7%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C SL     +  +++ ++L     + +I+ YV       A +L  ++       F W A
Sbjct: 165 KCGSLVDAEKVFDEMVHRDL--CSWNIMISGYVKGGNFEKARNLFDKMPNR--DNFSWTA 220

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           +I   V+   P+ A  L+  M +  +   ++ T    L A   +PS   G  +H  I   
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G DS+  V  +L+ MY +C ++  AR +FD+M +    D+VSW T++  Y ++G  E G 
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEER---DVVSWTTMIHTYLKNGRREEGF 337

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG--MMEEAKKVFERMKVKDVVS 282
            LF R   +  +  +  +    L+ACA L     GKQ    M+      F         +
Sbjct: 338 ALF-RHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSS-------A 389

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            +A+V  YS+ G  E+A ++F+ + Q     ++ +W++++ GYAQ G   +AL  F  + 
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILPQP----DLFSWTSLLVGYAQHGQHDKALHFFELLL 445

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKET-HCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             G +P+ +  + +LS CA  G +  G E  H    K  L+    H         +ID+ 
Sbjct: 446 KSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDH------YACIIDLL 499

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           A+      A  + + + P   D   W  ++G    +G    A      +F+
Sbjct: 500 ARAGQFTEAESIINEM-PIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFE 549



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 45/334 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W  +I   ++    +  F LF  +M     P+++TF  VL AC +L +   G  +HA
Sbjct: 317 VVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHA 376

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GFDS     +AL+ MY++C  +  A+ +F+ + QP   D+ SW +++  YAQ G 
Sbjct: 377 YMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQP---DLFSWTSLLVGYAQHGQ 433

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F  +      + DG++ +  LSACA  G   +G     +E    + E+  +  
Sbjct: 434 HDKALHFFELLLKS-GTKPDGIAFIGVLSACAHAGLVDKG-----LEYFHSIKEKHGLTR 487

Query: 280 VVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            +  +  ++   +R G F +A ++  +M    +K +   W+A++ G   R HG+  L   
Sbjct: 488 TIDHYACIIDLLARAGQFTEAESIINEM---PIKPDKYIWAALLGGC--RIHGNLELAKR 542

Query: 339 RQMQFCGLEP-NVVTLVSLLSGCASVGA------------------------LLLGKETH 373
                  +EP N  T V+L +  AS G                         + + +E H
Sbjct: 543 AAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVH 602

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
            +++      D SHP    ++  L ++  + K V
Sbjct: 603 VFSVG-----DNSHPKSKEILEYLSELSKRMKEV 631



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           ++ KP A      L  C +  AL+ G+Q+HA++  +    L  +++N L+DMY++ G + 
Sbjct: 113 RIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGL--YISNRLLDMYAKCGSLV 170

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A  VFD +  R++ SW  +++GY   G  +KA   FD+M       D  ++  ++  C 
Sbjct: 171 DAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCV 226

Query: 575 HSGMVDQGLKYFDSMSK 591
                ++ L+ +  M K
Sbjct: 227 QHNRPEEALELYRLMQK 243


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/575 (42%), Positives = 369/575 (64%), Gaps = 16/575 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +C  + +++K+F+ M  +D+ SWN +++GY+++G  ++A +LF KM + +      +W+A
Sbjct: 117 KCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDN----FSWTA 172

Query: 321 VIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +I+GY +    +EAL++FR M+     + N  T+ S L+  A+V  L +GKE H Y ++ 
Sbjct: 173 MISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRT 232

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L  D       +V +AL DMY KC S++ AR +FD +   +RD+ TWT MI  Y Q+G 
Sbjct: 233 GLDSDE------VVWSALSDMYGKCGSIEEARHIFDKMV--DRDIVTWTAMIDRYFQDGR 284

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +   LF  + +    ++PN FT S  L ACA   +   G+++H Y+ R  ++    F 
Sbjct: 285 RKEGFDLFADLLRSG--IRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPF-SFA 341

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           A+ L+ MYS+ G++ +A  VF    Q ++ SWTSL+ GY  +G  D+A   F+ + K G 
Sbjct: 342 ASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGT 401

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD +TF+ +L AC+H+G+VD+GL YF S+ +++G++  A+HYACI+DLL R+ + DEA 
Sbjct: 402 QPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAE 461

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I  M M+P   +W +LL GCRIH N++L + AA  L E+E E   +Y  L+NIYA AG
Sbjct: 462 NIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAG 521

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
            W +VA+IR  M   GV K+PG SW+  K     F VGD +HP+S++I E L  L +R+K
Sbjct: 522 MWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMK 581

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             G+VP T+F LHDV+DE+K   L  HSEKLA+A+GI++T  GTPI++ KNLR C DCH+
Sbjct: 582 EEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHT 641

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI FIS I N +II+RDSNRFH F++G C+C+ YW
Sbjct: 642 AIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 234/504 (46%), Gaps = 59/504 (11%)

Query: 109 RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
            A+ +    N  +  LQ++ +   P    +  ++++C +    + G  VH  I  SGF  
Sbjct: 44  EAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVP 103

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
            +F+ N L+ MYA+CD+L  +++LFDEM +  +C   SWN +++ YA+ G  +    LF 
Sbjct: 104 GLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLC---SWNILISGYAKMGLLQEAKSLFD 160

Query: 229 RM------------TGDVK-------------VQGDGVSLVNALSACASLGTWSRGKQCG 263
           +M            +G V+             ++    S  N  +  ++L   +      
Sbjct: 161 KMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLR 220

Query: 264 MMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           + +E      R  +  D V W+A+   Y + GS E+A  +F KM    V  ++VTW+A+I
Sbjct: 221 IGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKM----VDRDIVTWTAMI 276

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
             Y Q G   E  D+F  +   G+ PN  T   +L+ CA+  +  LGK+ H Y + RV  
Sbjct: 277 DRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGY-MTRV-- 333

Query: 383 VDGSHPDDLMVINALIDMYAKCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             G  P      +AL+ MY+KC + V   RV  +   P   D+ +WT +I  Y+QNG  +
Sbjct: 334 --GFDPFSFAA-SALVHMYSKCGNMVSAERVFKETPQP---DLFSWTSLIAGYAQNGQPD 387

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A+  F  + +     +P+  T    L ACA    +  G   + + ++ QY +     A+
Sbjct: 388 EAIRYFELLVKSG--TQPDHITFVGVLSACAHAGLVDKGLD-YFHSIKEQYGLT--HTAD 442

Query: 502 ---CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHWAFDQM 554
              C+ID+ +RSG  D A  +   +  + +   W SL+ G  +HG   L  +A  A  ++
Sbjct: 443 HYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEI 502

Query: 555 RKEGLAPDGVTFLVLLYACSHSGM 578
             E  A    T++ L    + +GM
Sbjct: 503 EPENPA----TYVTLANIYATAGM 522



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 173/363 (47%), Gaps = 26/363 (7%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI+ Y        A SL  ++       F W A+I   VR   P+ A  LF +MM+R  +
Sbjct: 142 LISGYAKMGLLQEAKSLFDKMPER--DNFSWTAMISGYVRHDRPNEALELF-RMMKRSDN 198

Query: 133 P--DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              +++T    L A   +P  R G  +H  I  +G DS+  V +AL  MY +C ++  AR
Sbjct: 199 SKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEAR 258

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            +FD+M      DIV+W  ++  Y Q G  + G  LFA +     ++ +  +    L+AC
Sbjct: 259 HIFDKMVDR---DIVTWTAMIDRYFQDGRRKEGFDLFADLLRS-GIRPNEFTFSGVLNAC 314

Query: 251 ASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           A+  +   GK+  G M      F+        + +A+V  YS+ G+   A  +FK+  Q 
Sbjct: 315 ANQTSEELGKKVHGYMTRVG--FDPFS----FAASALVHMYSKCGNMVSAERVFKETPQP 368

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
               ++ +W+++IAGYAQ G   EA+  F  +   G +P+ +T V +LS CA  G +  G
Sbjct: 369 ----DLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKG 424

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
            + + ++IK    +  +H  D      +ID+ A+    D A  +   ++ K  D   W  
Sbjct: 425 LD-YFHSIKEQYGL--THTADHYA--CIIDLLARSGQFDEAENIISKMSMKP-DKFLWAS 478

Query: 430 MIG 432
           ++G
Sbjct: 479 LLG 481



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 14/263 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I R  +       F LF  ++R G  P+E+TF  VL AC    S   G  VH  + 
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT 331

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFD   F  +AL+ MY++C  +  A ++F E  QP   D+ SW +++A YAQ+G  + 
Sbjct: 332 RVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQP---DLFSWTSLIAGYAQNGQPDE 388

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +  F  +      Q D ++ V  LSACA  G   +G         K+ +      D   
Sbjct: 389 AIRYFELLVKS-GTQPDHITFVGVLSACAHAGLVDKG--LDYFHSIKEQYGLTHTAD--H 443

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +  ++   +R G F++A  +  KM   ++K +   W++++ G   R HG+  L       
Sbjct: 444 YACIIDLLARSGQFDEAENIISKM---SMKPDKFLWASLLGGC--RIHGNLKLAQRAAEA 498

Query: 343 FCGLEP-NVVTLVSLLSGCASVG 364
              +EP N  T V+L +  A+ G
Sbjct: 499 LFEIEPENPATYVTLANIYATAG 521


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/849 (33%), Positives = 452/849 (53%), Gaps = 94/849 (11%)

Query: 19  LNHLFTNIKL--FSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAA 76
           LN+L    K+  F++  T  + I    L++C+++ Q   I  Q+I+        S   + 
Sbjct: 6   LNYLSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGF--FKDSFAASR 63

Query: 77  YVSHNAPSPALSLLQRISPSPFSV------FWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
            +  +   P +++ Q  S   FS       F  N +++  ++   P  A  ++  M+   
Sbjct: 64  LLKFSTELPFININQ--SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESN 121

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              D YT+P + ++C    +   G  +   +   GFDS+V++ N L+ MYA C  LS AR
Sbjct: 122 VAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDAR 181

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD      + D+VSWN+++A Y   G+ E                             
Sbjct: 182 KVFD---GSSVLDMVSWNSMLAGYVLVGNVE----------------------------- 209

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                           EAK V++RM  ++V++ N+M+  + + G+ E+A  LF +M+Q+ 
Sbjct: 210 ----------------EAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQK- 252

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              ++V+WSA+I+ Y Q     EAL +F++M   G+  + V ++S+LS C+ +  ++ GK
Sbjct: 253 ---DLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGK 309

Query: 371 ETHCYTIK---------------------RVLSVDGSHPD----DLMVINALIDMYAKCK 405
             H   +K                      V++      +    D +  N++I  Y KC 
Sbjct: 310 LVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCG 369

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            ++ AR +FD++   ++D  +W+ MI  Y+Q     + L LF +M  Q +  KP+   L 
Sbjct: 370 EIEKARALFDSMP--DKDNVSWSAMISGYAQQDRFTETLVLFQEM--QIEGTKPDETILV 425

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + AC  LAAL  G+ IHAY+ +N  ++ I  +   LI+MY + G ++ A  VF  L++
Sbjct: 426 SVISACTHLAALDQGKWIHAYIRKNGLKINI-ILGTTLINMYMKLGCVEDALEVFKGLEE 484

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           + V +W +L+ G  M+GL DK+   F +M++ G+ P+ +TF+ +L AC H G+VD+G ++
Sbjct: 485 KGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRH 544

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F+SM +E  I    +HY C+VDLLGRA  L EA ELIE MPM P    W ALL  C+ + 
Sbjct: 545 FNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYG 604

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           + E GE    +L+EL  + DG   LLSNIYA+ G W DV  +R +M+  GV K PGCS +
Sbjct: 605 DNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMI 664

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +       F  GD+THPQ++ I  +L  + +++K  GY P T     D+D+EEK   LF 
Sbjct: 665 EAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFR 724

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+G++   P TPIRI KNLRIC DCH+A   IS   N EI++RD +RFHHFK+
Sbjct: 725 HSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQ 784

Query: 826 GSCTCKGYW 834
           GSC+C  YW
Sbjct: 785 GSCSCMDYW 793


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/767 (36%), Positives = 430/767 (56%), Gaps = 105/767 (13%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VH  +  SG   +V++ N LM +Y++     +AR+LFDEM    +    SWNT+++AY++
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEM---PLRTAFSWNTVLSAYSK 92

Query: 217 SGDAEGGLMLFARMT---------------------GDVKVQGDGV---------SLVNA 246
            GD +     F ++                        ++V GD V         +L N 
Sbjct: 93  RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152

Query: 247 LSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDV 280
           L++ A+      GK+                          CG    AK VF+RM V+D+
Sbjct: 153 LASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDI 212

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
            SWNAM+  + ++G  + A A F++M + ++    VTW+++I+G+ QRG+   ALD+F +
Sbjct: 213 SSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQRGYDLRALDIFSK 268

Query: 341 M-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           M +   L P+  TL S+LS CA++  L +GK+ H + +     + G      +V+NALI 
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISG------IVLNALIS 322

Query: 400 MYAKCKSVDVARVMFDA-------------------------------IAPKNRDVATWT 428
           MY++C  V+ AR + +                                ++ K+RDV  WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI  Y Q+G   +A+ LF  M    +  +PN++TL+  L   + LA+L  G+QIH   +
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQ--RPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
           ++  E+    V+N LI MY+++G+I +A   FD ++ +R+ VSWTS++     HG  ++A
Sbjct: 441 KSG-EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F+ M  EGL PD +T++ +  AC+H+G+V+QG +YFD M     I     HYAC+VD
Sbjct: 500 LELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVD 559

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           L GRA  L EA E IE MP+EP  + W +LL+ CR+H N++LG++AA RLL LE E  G+
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGA 619

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y+ L+N+Y+  G+W++ A+IR  MK   VKK  G SW++ K     F V D THP+  +I
Sbjct: 620 YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEI 679

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
           Y  +  +   IK MGYVP T+  LHD+++E K  +L  HSEKLA+A+G+++T   T +RI
Sbjct: 680 YMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRI 739

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+C DCH+AI FIS ++  EII+RD+ RFHHFK+G C+C+ YW
Sbjct: 740 MKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 230/500 (46%), Gaps = 78/500 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I     +     A R+   M++ G  P ++T   VL +         G  VH+ I 
Sbjct: 114 WTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIV 173

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------------------- 202
             G   NV V N+L+ MYA+C     A+ +FD M    I                     
Sbjct: 174 KLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMA 233

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   DIV+WN++++ + Q G     L +F++M  D  +  D  +L + LSACA+L 
Sbjct: 234 QFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLE 293

Query: 255 TWSRGKQ--------------------------CGMMEEAKKVFERMKVKD--VVSWNAM 286
               GKQ                          CG +E A+++ E+   KD  +  + A+
Sbjct: 294 KLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTAL 353

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + GY ++G    A  +F  ++      +VV W+A+I GY Q G   EA+++FR M   G 
Sbjct: 354 LDGYIKLGDMNQAKNIFVSLKDR----DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ 409

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIK--RVLSVDGSHPDDLMVINALIDMYAKC 404
            PN  TL ++LS  +S+ +L  GK+ H   +K   + SV         V NALI MYAK 
Sbjct: 410 RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVS--------VSNALITMYAKA 461

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            ++  A   FD I  + RD  +WT MI + +Q+G A +AL LF  M  +   ++P+  T 
Sbjct: 462 GNITSASRAFDLIRCE-RDTVSWTSMIIALAQHGHAEEALELFETMLMEG--LRPDHITY 518

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDN 522
                AC     +  GRQ   + +    + +IP +++  C++D++ R+G +  A+   + 
Sbjct: 519 VGVFSACTHAGLVNQGRQY--FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEK 576

Query: 523 LK-QRNVVSWTSLMTGYGMH 541
           +  + +VV+W SL++   +H
Sbjct: 577 MPIEPDVVTWGSLLSACRVH 596



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 171/383 (44%), Gaps = 56/383 (14%)

Query: 87  LSLLQRISPSPFSVFWWNALI----RRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFV 141
           L++ Q    +   +  WN++I    +R   LR    A  +F +M+R     PD +T   V
Sbjct: 230 LAMAQFEQMAERDIVTWNSMISGFNQRGYDLR----ALDIFSKMLRDSLLSPDRFTLASV 285

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           L AC  L     G  +H+ I ++GFD +  V NAL++MY+RC  +  AR+L ++     +
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345

Query: 202 C------------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMT 231
                                          D+V+W  ++  Y Q G     + LF  M 
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGY 290
           G  + + +  +L   LS  +SL + S GKQ  G   ++ +++       V   NA++T Y
Sbjct: 406 GGGQ-RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS------VSVSNALITMY 458

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           ++ G+   A   F  +R E    + V+W+++I   AQ GH  EAL++F  M   GL P+ 
Sbjct: 459 AKAGNITSASRAFDLIRCER---DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
           +T V + S C   G +  G++        +  VD   P  L     ++D++ +   +  A
Sbjct: 516 ITYVGVFSACTHAGLVNQGRQ----YFDMMKDVDKIIP-TLSHYACMVDLFGRAGLLQEA 570

Query: 411 RVMFDAIAPKNRDVATWTVMIGS 433
           +   + + P   DV TW  ++ +
Sbjct: 571 QEFIEKM-PIEPDVVTWGSLLSA 592



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 459 PNAFTLSCALMACARL-------AALRFGRQ-IHAYVLRNQYEMLIPFVANCLIDMYSRS 510
           P   +LS  L  C  L       +  RF  Q +H  V+++   M   ++ N L+++YS++
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGL-MFSVYLMNNLMNVYSKT 62

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G    AR +FD +  R   SW ++++ Y   G  D     FDQ+ +     D V++  ++
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQR----DSVSWTTMI 118

Query: 571 YACSHSGMVDQGLKYFDSMSKE 592
               + G   + ++    M KE
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKE 140


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/734 (36%), Positives = 415/734 (56%), Gaps = 25/734 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMM--RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           WN++I          + F + ++MM    G  PD  T   VL  C      + G  +H +
Sbjct: 100 WNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGL 159

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
               G   +V V N+L+ MY++C  L+ A+ LFD+  +    + VSWNT++      G  
Sbjct: 160 AVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK---NAVSWNTMIGGLCTKGYI 216

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
                LF  M     ++ + V+++N L AC  +      K+         +    +  ++
Sbjct: 217 FEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKEL----HGYSIRHGFQYDEL 272

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           V+ N  V  Y++ G    A  +F  M  + V     +W+A+I G AQ G   +AL+++ Q
Sbjct: 273 VA-NGFVAAYAKCGMLICAERVFYSMETKTVN----SWNALIGGCAQNGDPRKALNLYIQ 327

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M + GL P+  T+ SLL   A + +L  GKE H + ++  L +D        +  +L+ +
Sbjct: 328 MTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDS------FIGISLLSL 381

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y  C     AR++FD +  K+    +W  MI  YSQNG   DAL LF ++       +P+
Sbjct: 382 YIHCGESSSARLLFDGMEEKSS--VSWNAMISGYSQNGLPEDALILFRKLVSDG--FQPS 437

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
              +   L AC++ +ALR G++ H Y L+    M   FVA   IDMY++SG I  +R VF
Sbjct: 438 DIAVVSVLGACSQQSALRLGKETHCYALKALL-MEDVFVACSTIDMYAKSGCIKESRSVF 496

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D LK +++ SW +++  YG+HG G+++   F++MRK G  PDG TF+ +L  CSH+G+V+
Sbjct: 497 DGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVE 556

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +GLKYF+ M    GI  + EHYAC++D+LGRA RLD+A+ L+  MP +P   +W +LL+ 
Sbjct: 557 EGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSF 616

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR    +E+G++ A +LLELE +   +Y  LSN+YA +GRW DV R+R ++K  G++K  
Sbjct: 617 CRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDA 676

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++      +F  GD   PQS+++      L +++  +GY P TS  LHDVD+E+K 
Sbjct: 677 GCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKI 736

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           + L  HSEKLA+ +G+L T  GT +RI KNLRIC DCH+A  F+S +   EII+RD+ RF
Sbjct: 737 EKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRF 796

Query: 821 HHFKEGSCTCKGYW 834
           HHFK+G C+C  YW
Sbjct: 797 HHFKDGLCSCGDYW 810



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           +DA+ +F ++    +    N FT  C + AC        G  IH  V++    +L  FV 
Sbjct: 12  SDAIDMFVKLITDTEFNADN-FTFPCVIKACTGSLDRGLGEVIHGMVIKMGL-LLDVFVG 69

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR--KEG 558
           N LI MY + G +D A  VF  +  RN+VSW S+++G+  +G          +M   +EG
Sbjct: 70  NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           L PD  T + +L  C+    V  G++    ++ + G+S        +VD+  +   L EA
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIR-IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188

Query: 619 VELIEGMPMEPTPIIWVALLNG 640
             L +        + W  ++ G
Sbjct: 189 QMLFD-KNNRKNAVSWNTMIGG 209


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/661 (40%), Positives = 391/661 (59%), Gaps = 40/661 (6%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N +++ +A    +S AR  FD   +    D VSWN ++AAY ++G  E    LF     +
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEK---DAVSWNGMLAAYVRNGRVEEARGLF-----N 61

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            + + D +S    +S            Q G M EA+++F+RM  +DVVSWN MV+GY+R 
Sbjct: 62  SRTEWDVISWNALMSGYV---------QWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 112

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   +A  LF      +V     TW+AV++GYAQ G   EA  VF  M     E N V+ 
Sbjct: 113 GDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSW 164

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            ++++  A +   ++ +    + +    +V           N ++  YA+   ++ A+ +
Sbjct: 165 NAMVA--AYIQRRMMDEAKELFNMMPCRNVAS--------WNTMLTGYAQAGMLEEAKAV 214

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +  K  D  +W  M+ +YSQ G + + L LF +M +  + V  +AF  +C L  CA 
Sbjct: 215 FDTMPQK--DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF--ACVLSTCAD 270

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +AAL  G Q+H  ++R  Y +   FV N L+ MY + G+++ AR  F+ +++R+VVSW +
Sbjct: 271 IAALECGMQLHGRLIRAGYGVGC-FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNT 329

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ GY  HG G +A   FD MR     PD +T + +L ACSHSG+V++G+ YF SM  +F
Sbjct: 330 MIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 389

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           G++A+ EHY C++DLLGRA RL EA +L++ MP EP   +W ALL   RIH N ELG  A
Sbjct: 390 GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 449

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A ++ ELE E  G Y LLSNIYA++G+W+D  ++R +M+  GVKK PG SW++ +    T
Sbjct: 450 AEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHT 509

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  GD  HP+ +KIY  L  L  R+K  GYV  T   LHDV++EEK  +L  HSEKLA+A
Sbjct: 510 FSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVA 569

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           YGIL   PG PIR+ KNLR+CGDCH+A  +IS I    I+LRDSNRFHHF+ GSC+C  Y
Sbjct: 570 YGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDY 629

Query: 834 W 834
           W
Sbjct: 630 W 630



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 211/437 (48%), Gaps = 60/437 (13%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD--------- 219
           +V   NALM+ Y +   +S AR+LFD M  PG  D+VSWN +V+ YA+ GD         
Sbjct: 67  DVISWNALMSGYVQWGKMSEARELFDRM--PGR-DVVSWNIMVSGYARRGDMVEARRLFD 123

Query: 220 -----------------AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
                            A+ G++  AR   D   + + VS  NA+ A           Q 
Sbjct: 124 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW-NAMVAAYI--------QR 174

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
            MM+EAK++F  M  ++V SWN M+TGY++ G  E+A A+F  M Q+    + V+W+A++
Sbjct: 175 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAML 230

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A Y+Q G   E L +F +M  CG   N      +LS CA + AL  G + H   I+    
Sbjct: 231 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 290

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V         V NAL+ MY KC +++ AR  F+ +  + RDV +W  MI  Y+++G   +
Sbjct: 291 V------GCFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKE 342

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVAN 501
           AL +F  M  +    KP+  TL   L AC+    +  G   + Y + + + +   P    
Sbjct: 343 ALEIFDMM--RTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHHDFGVTAKPEHYT 399

Query: 502 CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           C+ID+  R+G +  A  +  ++  + +   W +L+    +H   +    A +++ +  L 
Sbjct: 400 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LE 457

Query: 561 PDGVTFLVLL---YACS 574
           P+     VLL   YA S
Sbjct: 458 PENAGMYVLLSNIYASS 474



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 23/261 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +    +   +LF++M R G   +   F  VL  C ++ +  CG  +H  + 
Sbjct: 226 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 285

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+    FV NAL+AMY +C  +  AR  F+EM +    D+VSWNT++A YA+ G  + 
Sbjct: 286 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER---DVVSWNTMIAGYARHGFGKE 342

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M      + D ++LV  L+AC+           G++E+    F  M     V+
Sbjct: 343 ALEIFDMMR-TTSTKPDDITLVGVLAACS---------HSGLVEKGISYFYSMHHDFGVT 392

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  M+    R G   +A  L K M  E    +   W A++   A R H +  L  
Sbjct: 393 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP---DSTMWGALLG--ASRIHRNPELGR 447

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +   LEP    +  LLS
Sbjct: 448 SAAEKIFELEPENAGMYVLLS 468



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 127/327 (38%), Gaps = 71/327 (21%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ YV     S A  L  R+      V  WN ++    R      A RLF     R   
Sbjct: 74  LMSGYVQWGKMSEARELFDRMPGR--DVVSWNIMVSGYARRGDMVEARRLFDAAPVR--- 128

Query: 133 PDEYTFPFVLKAC---GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
            D +T+  V+      G L  +R        +  +  + N    NA++A Y +   +  A
Sbjct: 129 -DVFTWTAVVSGYAQNGMLEEAR-------RVFDAMPERNAVSWNAMVAAYIQRRMMDEA 180

Query: 190 RQLFDEM---------------FQPGIC-------------DIVSWNTIVAAYAQSGDAE 221
           ++LF+ M                Q G+              D VSW  ++AAY+Q G +E
Sbjct: 181 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSE 240

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
             L LF  M G      +  +    LS CA +     G Q                    
Sbjct: 241 ETLQLFIEM-GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 299

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                 CG ME+A+  FE M+ +DVVSWN M+ GY+R G  ++A  +F  MR  + K + 
Sbjct: 300 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 359

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +T   V+A  +  G   + +  F  M 
Sbjct: 360 ITLVGVLAACSHSGLVEKGISYFYSMH 386


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 294/832 (35%), Positives = 450/832 (54%), Gaps = 60/832 (7%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQNL-THVPPSHL---IAAYV---SHNAPSPALSLLQR 92
           +S LL  CK+L ++  +H  ++ + L  H P S+L   IA+ V   +  +   A +    
Sbjct: 28  SSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGD 87

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
              +  S+F +N LIR      L D A  L++QM+  G  PD+YTFPF+L AC ++ +  
Sbjct: 88  DDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALS 147

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G  VH  +   G + ++FV N+L+  YA C  +   R+LFD M +    ++VSW +++ 
Sbjct: 148 EGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLER---NVVSWTSLIN 204

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-CGMMEEAKKV 271
            Y+    ++  + LF +M G+  V+ + V++V  +SACA L     GK+ C  + E    
Sbjct: 205 GYSGRDLSKEAVSLFFQM-GEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGME 263

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
              + V      NA+V  Y + G    A  +F     E    N+V ++ +++ Y      
Sbjct: 264 LSTIMV------NALVDMYMKCGDICAARQIF----DECANKNLVMYNTIMSNYVHHEWA 313

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            + L +  +M   G  P+ VT++S ++ CA +G L +GK +H Y ++  L    +     
Sbjct: 314 SDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN----- 368

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPK-----------------------------NR 422
            + NA+IDMY KC   + A  +F+ +  K                              R
Sbjct: 369 -ISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLER 427

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           D+ +W  MIG+  Q     +A+ LF +M  Q++ +  +  T+     AC  L AL   + 
Sbjct: 428 DLVSWNTMIGALVQVSMFEEAIELFREM--QNQGIPGDRVTMVGIASACGYLGALDLAKW 485

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +  Y+ +N   + +      L+DM+SR GD  +A  VF  +++R+V +WT+ +    M G
Sbjct: 486 VCTYIEKNDIHVDLQL-GTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEG 544

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
             + A   F++M ++ + PD V F+ LL ACSH G VDQG + F SM K  GI     HY
Sbjct: 545 NTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHY 604

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
            C+VDLLGRA  L+EAV+LI+ MP+EP  ++W +LL  CR H NVEL   AA +L +L  
Sbjct: 605 GCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAP 664

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           E+ G + LLSNIYA+AG+W DVAR+R  MK  GV+K PG S ++ +     F  GD +H 
Sbjct: 665 ERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHA 724

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           ++  I  +L  +  R+   GYVP T+  L DVD++EK  LL  HSEKLA+AYG++TT  G
Sbjct: 725 ENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQG 784

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PIR+ KNLR+C DCHS    +S + N EI +RD+NR+H FKEG C+C+ YW
Sbjct: 785 IPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/774 (36%), Positives = 411/774 (53%), Gaps = 105/774 (13%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP----------GIC--- 202
           +VHA + +SGF       N L+ MY +   L YARQLF+E+  P            C   
Sbjct: 34  AVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALG 93

Query: 203 -----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
                            D V +N ++  YA +GD    L LF  M  D   + D  +  +
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD-DFRPDDFTFTS 152

Query: 246 ALSA---------------CASLGTW---------------------SRGKQCGMMEEAK 269
            LSA               CA + T                        G  C  M  A+
Sbjct: 153 VLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSAR 212

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           K+F+ M  +D ++W  M+TGY R      A  +F+ M  EN+      W+A+I+GY   G
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM-VENLG---AAWNAMISGYVHCG 268

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
              EAL + R+M+F G++ + +T  +++S CA+VG+  +GK+ H Y +K  L  + +H  
Sbjct: 269 CFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNEL--NPNHSF 326

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------------------------- 421
            L V NALI +Y K   VD AR +F A+  +N                            
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMP 386

Query: 422 -RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            +++ T TVMI   +QNG  ++ L LF QM + D   +P  F  + AL AC+ L AL  G
Sbjct: 387 VKNLLTLTVMISGLAQNGFGDEGLKLFKQM-RLDGF-EPCDFAFAGALTACSVLGALENG 444

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           RQ+HA ++   YE  +  V N +I MY++ G ++ A  VF  +   ++VSW S++   G 
Sbjct: 445 RQLHAQLVHLGYESSLS-VGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQ 503

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG G KA   FDQM KEG+ PD +TFL +L ACSH+G+V++G  YF+SM + +GI+   +
Sbjct: 504 HGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCED 563

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HYA +VDL  RA     A  +I+ MP +P   +W ALL GCRIH N++LG  AA +L +L
Sbjct: 564 HYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKL 623

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
             + DG+Y LLSNIYA+ GRW +VA++R LM+   V+K P CSW++ +     F V D  
Sbjct: 624 MPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDV 683

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP+   +Y  L  L   +K +GY+P T F LHD++ E+K   L  HSEKLA+ +GI+   
Sbjct: 684 HPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLP 743

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           PG  +R+ KN+RICGDCH+A  F+S +   EII+RD  RFHHFK G C+C+ YW
Sbjct: 744 PGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 153/602 (25%), Positives = 259/602 (43%), Gaps = 90/602 (14%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           +  LL   CKS   VY       + N   +  + LI AY +         +         
Sbjct: 51  LNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMR 110

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL--PSSRCGSS 156
              ++NA+I          +A  LF  M R  + PD++TF  VL A         +CG  
Sbjct: 111 DSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-Q 169

Query: 157 VHAVICSSGFDS-NVFVCNALMAMYAR--------CDTLSYARQLFDEMFQPGICDIVSW 207
           +H  +  +G    +  V NAL+++Y +        C  +  AR+LFDEM +    D ++W
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKR---DELTW 226

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGD------------------------------VKVQ 237
            T++  Y ++ D  G   +F  M  +                              + +Q
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 238 GDGVSLVNALSACASLGTWSRGKQC------------------------------GMMEE 267
            D ++    +SACA++G++  GKQ                                 ++E
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A+K+F  M V+++++WNA+++GY   G  E+A + F++M  +    N++T + +I+G AQ
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVK----NLLTLTVMISGLAQ 402

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G G E L +F+QM+  G EP        L+ C+ +GAL  G++ H   +         +
Sbjct: 403 NGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL------GY 456

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
              L V NA+I MYAKC  V+ A  +F  +   + D+ +W  MI +  Q+G    A+ LF
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
            QM ++   V P+  T    L AC+    +  GR     +L +            ++D++
Sbjct: 515 DQMLKEG--VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLF 572

Query: 508 SRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
            R+G    AR+V D++  +     W +L+ G  +HG  D    A +Q+ K     DG   
Sbjct: 573 CRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYV 632

Query: 567 LV 568
           L+
Sbjct: 633 LL 634



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 24/254 (9%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           D   +LF QM   G+ P ++ F   L AC  L +   G  +HA +   G++S++ V NA+
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           ++MYA+C  +  A  +F  M  P + D+VSWN+++AA  Q G     + LF +M  +  V
Sbjct: 467 ISMYAKCGVVEAAESVFVTM--PSV-DLVSWNSMIAALGQHGHGVKAIELFDQMLKE-GV 522

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYS 291
             D ++ +  L+AC+           G++E+ +  F  M     ++     +  MV  + 
Sbjct: 523 FPDRITFLTVLTACS---------HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFC 573

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP-NV 350
           R G F  A  +   M     K     W A++AG   R HG+  L +    Q   L P N 
Sbjct: 574 RAGMFSYARIVIDSMPS---KPGAPVWEALLAGC--RIHGNMDLGIEAAEQLFKLMPQND 628

Query: 351 VTLVSLLSGCASVG 364
            T V L +  A VG
Sbjct: 629 GTYVLLSNIYADVG 642


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/768 (35%), Positives = 417/768 (54%), Gaps = 55/768 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+L    V    P     +F +M+  G  PD  T   +L AC +L   + G ++H 
Sbjct: 207 VVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHG 266

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G   NVFV NAL+ +Y  C  +  A+ +FD M      ++++WN++ + Y   G 
Sbjct: 267 FALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHR---NVITWNSLASCYVNCGF 323

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            + GL +F  M G   V+ D +++ + L AC+ L     GK            +   V+D
Sbjct: 324 PQKGLNVFREM-GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGF-----AVKHGMVED 377

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V    A+V  Y+      +A  +F  M   NV    VTW+++ + Y   G   + L+VFR
Sbjct: 378 VFVCTALVNLYANCLCVREAQTVFDLMPHRNV----VTWNSLSSCYVNCGFPQKGLNVFR 433

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M   G++P++VT++S+L  C+ +  L  GK  H + ++  +       +D+ V NAL+ 
Sbjct: 434 EMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMV------EDVFVCNALLS 487

Query: 400 MYAKCKSVDVARVMFDAIAPK----------------------------NRDVA-----T 426
           +YAKC  V  A+V+FD I  +                            NRD       T
Sbjct: 488 LYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEIT 547

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W+V+IG   +N    +A+ +F +M  Q    KP+  T+   L AC+    LR G++IH Y
Sbjct: 548 WSVVIGGCVKNSRIEEAMEIFRKM--QTMGFKPDETTIYSILRACSLSECLRMGKEIHCY 605

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           V R+  +  +    N L+DMY++ G +  +R VFD +  ++V SW +++   GMHG G +
Sbjct: 606 VFRHWKDWDLA-RTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKE 664

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F++M    + PD  TF  +L ACSHS +V++G++ F+SMS++  +   AEHY C+V
Sbjct: 665 ALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVV 724

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           D+  RA  L+EA   I+ MPMEPT I W A L GCR++ NVEL +++A +L E++     
Sbjct: 725 DIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSA 784

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
           +Y  L NI   A  W + ++IR LMK  G+ K PGCSW        TF  GD+++ +S K
Sbjct: 785 NYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDK 844

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           IY  L  L  +IKA GY P T + LHD+D EEK + L  HSEKLA+A+GIL     + IR
Sbjct: 845 IYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIR 904

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + KNLRICGDCH+AI ++S ++   I++RDS RFHHFK G+C+CK +W
Sbjct: 905 VFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 227/466 (48%), Gaps = 41/466 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN+L    V    P     +F +M   G  PD      +L AC +L   + G ++H
Sbjct: 307 NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIH 366

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 G   +VFVC AL+ +YA C  +  A+ +FD M      ++V+WN++ + Y   G
Sbjct: 367 GFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR---NVVTWNSLSSCYVNCG 423

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             + GL +F  M  +  V+ D V++++ L AC+ L     GK                  
Sbjct: 424 FPQKGLNVFREMVLN-GVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVC 482

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +C  + EA+ VF+ +  ++V SWN ++T Y     +E    +F +M ++ VK
Sbjct: 483 NALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVK 542

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            + +TWS VI G  +     EA+++FR+MQ  G +P+  T+ S+L  C+    L +GKE 
Sbjct: 543 ADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEI 602

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HCY  +           DL   NAL+DMYAKC  + ++R +FD +  K  DV +W  MI 
Sbjct: 603 HCYVFRHWKDW------DLARTNALVDMYAKCGGLSLSRNVFDMMPIK--DVFSWNTMIF 654

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           +   +G   +AL+LF +M     +VKP++ T +C L AC+    +  G QI   + R+  
Sbjct: 655 ANGMHGNGKEALSLFEKMLLS--MVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHL 712

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG 537
                    C++D+YSR+G ++ A      +  +   ++W + + G
Sbjct: 713 VEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAG 758



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 236/490 (48%), Gaps = 24/490 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+L    V    P     +F +M       +  T   +L  C +L   + G  +H 
Sbjct: 106 VVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHG 165

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   G   +VFV +A +  YA+C  +  A+ +FD M      D+V+WN++ + Y   G 
Sbjct: 166 FVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHR---DVVTWNSLSSCYVNCGF 222

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            + GL +F  M  D  V+ D V++   LSAC+ L     GK            +   V++
Sbjct: 223 PQKGLNVFREMVLD-GVKPDPVTVSCILSACSDLQDLKSGKAIHGF-----ALKHGMVEN 276

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   NA+V  Y       +A A+F  M       NV+TW+++ + Y   G   + L+VFR
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHR----NVITWNSLASCYVNCGFPQKGLNVFR 332

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M   G++P+ + + S+L  C+ +  L  GK  H + +K  +       +D+ V  AL++
Sbjct: 333 EMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMV------EDVFVCTALVN 386

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YA C  V  A+ +FD +   +R+V TW  +   Y   G     L +F +M      VKP
Sbjct: 387 LYANCLCVREAQTVFDLMP--HRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNG--VKP 442

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +  T+   L AC+ L  L+ G+ IH + +R+     + FV N L+ +Y++   +  A+VV
Sbjct: 443 DLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDV-FVCNALLSLYAKCVCVREAQVV 501

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +  R V SW  ++T Y  +   +K  + F QM ++ +  D +T+ V++  C  +  +
Sbjct: 502 FDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRI 561

Query: 580 DQGLKYFDSM 589
           ++ ++ F  M
Sbjct: 562 EEAMEIFRKM 571



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/474 (29%), Positives = 233/474 (49%), Gaps = 29/474 (6%)

Query: 115 LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           LP+ A +++     RG  PD+  F  V KAC     +      H      G  S+V + N
Sbjct: 20  LPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGN 79

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           A +  Y +C  +  AR++FD++      D+V+WN++ A Y   G  + GL +F +M G  
Sbjct: 80  AFIHAYGKCKCVEGARRVFDDLVAR---DVVTWNSLSACYVNCGFPQQGLNVFRKM-GLN 135

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           KV+ + +++ + L  C+ L     GK     E    V     V+DV   +A V  Y++  
Sbjct: 136 KVKANPLTVSSILPGCSDLQDLKSGK-----EIHGFVVRHGMVEDVFVSSAFVNFYAKCL 190

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
              +A  +F  M       +VVTW+++ + Y   G   + L+VFR+M   G++P+ VT+ 
Sbjct: 191 CVREAQTVFDLMPHR----DVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVS 246

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +LS C+ +  L  GK  H + +K  +       +++ V NAL+++Y  C  V  A+ +F
Sbjct: 247 CILSACSDLQDLKSGKAIHGFALKHGMV------ENVFVSNALVNLYESCLCVREAQAVF 300

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +   +R+V TW  +   Y   G     L +F +M      VKP+   +S  L AC++L
Sbjct: 301 DLMP--HRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG--VKPDPMAMSSILPACSQL 356

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             L+ G+ IH + +++     + FV   L+++Y+    +  A+ VFD +  RNVV+W SL
Sbjct: 357 KDLKSGKTIHGFAVKHGMVEDV-FVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSL 415

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-----HSGMVDQGL 583
            + Y   G   K    F +M   G+ PD VT L +L+ACS      SG V  G 
Sbjct: 416 SSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGF 469



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 191/400 (47%), Gaps = 18/400 (4%)

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           + DV   NA +  Y +    E A  +F  +    V  +VVTW+++ A Y   G   + L+
Sbjct: 72  MSDVSIGNAFIHAYGKCKCVEGARRVFDDL----VARDVVTWNSLSACYVNCGFPQQGLN 127

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           VFR+M    ++ N +T+ S+L GC+ +  L  GKE H + ++  +       +D+ V +A
Sbjct: 128 VFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMV------EDVFVSSA 181

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
            ++ YAKC  V  A+ +FD +   +RDV TW  +   Y   G     L +F +M      
Sbjct: 182 FVNFYAKCLCVREAQTVFDLMP--HRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDG-- 237

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           VKP+  T+SC L AC+ L  L+ G+ IH + L++     + FV+N L+++Y     +  A
Sbjct: 238 VKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENV-FVSNALVNLYESCLCVREA 296

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           + VFD +  RNV++W SL + Y   G   K    F +M   G+ PD +    +L ACS  
Sbjct: 297 QAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQL 356

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             +  G K     + + G+         +V+L      + EA  + + MP     + W +
Sbjct: 357 KDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNV-VTWNS 414

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
            L+ C ++       L   R + L   K    T+LS ++A
Sbjct: 415 -LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHA 453



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-RVLSVDGSH 387
           G  +EA+ ++   +  G++P+    +++   CA+    L  K+ H    +  V+S     
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMS----- 73

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             D+ + NA I  Y KCK V+ AR +FD +    RDV TW  +   Y   G     L +F
Sbjct: 74  --DVSIGNAFIHAYGKCKCVEGARRVFDDLVA--RDVVTWNSLSACYVNCGFPQQGLNVF 129

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
            +M      VK N  T+S  L  C+ L  L+ G++IH +V+R+     + FV++  ++ Y
Sbjct: 130 RKMGLNK--VKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDV-FVSSAFVNFY 186

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
           ++   +  A+ VFD +  R+VV+W SL + Y   G   K    F +M  +G+ PD VT  
Sbjct: 187 AKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVS 246

Query: 568 VLLYACS 574
            +L ACS
Sbjct: 247 CILSACS 253


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 279/700 (39%), Positives = 408/700 (58%), Gaps = 26/700 (3%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TF  +LK C        G +VHA + + G  S      AL  MY +C   + AR++FD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ-GDGVSLVNALSACASLGT 255
                 D V+WN +VA YA++G     +    RM G+   +  D V+LV+ L ACA    
Sbjct: 78  PSR---DRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACAD--- 131

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
               +      E      R  + ++V+ + A++  Y + G+ E A A+F  M   N    
Sbjct: 132 ---ARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNS--- 185

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V+W+A+I GYA  G+  EA+ +F +M   G++    ++++ L  C  +G L   +  H 
Sbjct: 186 -VSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHE 244

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
             ++  LS + S      V NALI  YAKCK  D+A  +F+ +  K   + +W  MI  +
Sbjct: 245 LLVRVGLSSNVS------VTNALITTYAKCKRADLAAQVFNELGNKKTRI-SWNAMILGF 297

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +QN    DA  LF +M  Q + V+P++FTL   + A A ++     R IH Y +R+Q + 
Sbjct: 298 TQNECPEDAERLFARM--QLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQ 355

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            + +V   LIDMYS+ G +  AR +FD+ + R+V++W +++ GYG HG G  A   F++M
Sbjct: 356 DV-YVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEM 414

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           +  G  P+  TFL +L ACSH+G+VD+G KYF SM K++G+    EHY  +VDLLGRA +
Sbjct: 415 KGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGK 474

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           LDEA   I+ MP+EP   ++ A+L  C++H NVEL E +A  + EL  E+   + LL+NI
Sbjct: 475 LDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANI 534

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YANA  WKDVAR+R+ M+  G++K PG S +Q K    TF+ G   H  ++ IY  LA L
Sbjct: 535 YANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKL 594

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
           ++ IK MGYVP T  ++HDV+D+ K  LL  HSEKLA+AYG++ TAPGT I+I KNLR+C
Sbjct: 595 IEEIKDMGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVC 653

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCH+A   IS++   EII+RD  RFHHFK+G C+C  YW
Sbjct: 654 NDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 241/516 (46%), Gaps = 43/516 (8%)

Query: 35  PCIKITSLLLRQCKS---LTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSL 89
           P ++  + LL+ C +   L     +H Q+  + L    +  + L   Y     P+ A  +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 90  LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR--GWHPDEYTFPFVLKACGE 147
             R+ PS   V W NA++    R  LP +A    ++M     G  PD  T   VL AC +
Sbjct: 74  FDRM-PSRDRVAW-NAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACAD 131

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
             +      VHA    +G D  V V  A++  Y +C  +  AR +FD M    + + VSW
Sbjct: 132 ARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCM---PVRNSVSW 188

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           N ++  YA +G+A   + LF RM  +  V     S++ AL AC  L         G ++E
Sbjct: 189 NAMIDGYADNGNATEAMALFWRMVQE-GVDVTDASVLAALQACGEL---------GYLDE 238

Query: 268 AKKVFE---RMKVKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            ++V E   R+ +   VS  NA++T Y++    + A  +F ++  +  +   ++W+A+I 
Sbjct: 239 VRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTR---ISWNAMIL 295

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G+ Q     +A  +F +MQ   + P+  TLVS++   A +   L  +  H Y+I+  L  
Sbjct: 296 GFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD- 354

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 D+ V+ ALIDMY+KC  V +AR +FD  + ++R V TW  MI  Y  +G    A
Sbjct: 355 -----QDVYVLTALIDMYSKCGRVSIARRLFD--SARDRHVITWNAMIHGYGSHGFGQAA 407

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN-- 501
           + LF +M     L  PN  T    L AC+    +  G++  A  ++  Y  L P + +  
Sbjct: 408 VELFEEMKGTGSL--PNETTFLSVLAACSHAGLVDEGQKYFAS-MKKDYG-LEPGMEHYG 463

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
            ++D+  R+G +D A     N+     +S    M G
Sbjct: 464 TMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLG 499


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/683 (38%), Positives = 398/683 (58%), Gaps = 27/683 (3%)

Query: 154  GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            G  +H        DS++ V   LM MYA+C     A+QLF  +      D+V+W+ I+AA
Sbjct: 348  GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR---DLVAWSAIIAA 404

Query: 214  YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--QCGMMEEAKKV 271
              Q+G  E  L LF  M    K++ + V+L++ L ACA L     GK   C  ++     
Sbjct: 405  LVQTGYPEEALSLFQEMQNQ-KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD- 462

Query: 272  FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                   D+ +  A+V+ Y++ G F  A   F +M   ++    VTW+++I GYAQ G  
Sbjct: 463  ------SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI----VTWNSLINGYAQIGDP 512

Query: 332  HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            + A+D+F +++   + P+  T+V ++  CA +  L  G   H   +K           D 
Sbjct: 513  YNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL------GFESDC 566

Query: 392  MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
             V NALIDMYAKC S+  A  +F+      +D  TW V+I +Y QNG A +A++ F QM 
Sbjct: 567  HVKNALIDMYAKCGSLPSAEFLFNK-TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625

Query: 452  QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
             ++    PN+ T    L A A LAA R G   HA +++  + +    V N LIDMY++ G
Sbjct: 626  LEN--FHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF-LSNTLVGNSLIDMYAKCG 682

Query: 512  DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
             +D +  +F+ +  ++ VSW ++++GY +HG GD+A   F  M++  +  D V+F+ +L 
Sbjct: 683  QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742

Query: 572  ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
            AC H+G+V++G K F SMS ++ I    EHYAC+VDLLGRA   DE +  I+ MP+EP  
Sbjct: 743  ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802

Query: 632  IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
             +W ALL  CR+H+NV+LGE+A + L++LE      + +LS+IYA +GRW D  + RS M
Sbjct: 803  GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 862

Query: 692  KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
               G+KK PGCSWV+ K     F VGD++HPQ + ++ +   L+++++ +GYVP  S  L
Sbjct: 863  NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVL 922

Query: 752  HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
             +V++E+K   L+ HSE+LA+ + +L T PG+ I+I KNLR+C DCH+   FIS I    
Sbjct: 923  QNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRR 982

Query: 812  IILRDSNRFHHFKEGSCTCKGYW 834
            II+RD+ RFHHF++G C+C  YW
Sbjct: 983  IIVRDATRFHHFEDGICSCNDYW 1005



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 286/622 (45%), Gaps = 80/622 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPP-SHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           LL  CK L  +  IH QIIV    H    +HLI  Y   +    A S+    +P+P  + 
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDS-TPNPSRIL 96

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W N++IR   R +  + A  ++  M+ +G  PD+YTF FVLKAC    + + G   H  I
Sbjct: 97  W-NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEI 155

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              G + +VF+   L+ MY++   L  AR++FD+M +    D+V+WN ++A  +QS D  
Sbjct: 156 DRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR---DVVAWNAMIAGLSQSEDPC 212

Query: 222 GGLMLFARMTGDVKVQGDGVSLVN------------------------ALSACASLGTWS 257
             +  F  M   V V+   VSL+N                          S+  S G   
Sbjct: 213 EAVDFFRSMQL-VGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLID 271

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG ++ A++VF++M  +D VSW  M+ GY+  G F +   LF KM+  NV++N V 
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV- 330

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH-CYT 376
            SAV A  A      E +D+ +                             GKE H C  
Sbjct: 331 -SAVSAFLA----AAETIDLEK-----------------------------GKEIHGCAL 356

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            +R+ S       D++V   L+ MYAKC   + A+ +F  +  + RD+  W+ +I +  Q
Sbjct: 357 QQRIDS-------DILVATPLMVMYAKCGETEKAKQLFWGL--QGRDLVAWSAIIAALVQ 407

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G   +AL+LF +M  Q++ +KPN  TL   L ACA L+ L+ G+ IH + ++   +  +
Sbjct: 408 TGYPEEALSLFQEM--QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDL 465

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
                 L+ MY++ G    A   F+ +  R++V+W SL+ GY   G    A   F ++R 
Sbjct: 466 S-TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
             + PD  T + ++ AC+    +DQG      +  + G  +       ++D+  +   L 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLP 583

Query: 617 EAVELIEGMPMEPTPIIWVALL 638
            A  L          + W  ++
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVII 605



 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 143/495 (28%), Positives = 229/495 (46%), Gaps = 37/495 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   V+   P+ A  LF +M  +   P+  T   +L AC +L   + G S+H    
Sbjct: 398 WSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTV 457

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  DS++    AL++MYA+C   + A   F+ M      DIV+WN+++  YAQ GD   
Sbjct: 458 KADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR---DIVTWNSLINGYAQIGDPYN 514

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + +F ++     +  D  ++V  + ACA L    +G  C      K  FE     D   
Sbjct: 515 AIDMFYKLRLSA-INPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFE----SDCHV 568

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++ GS   A  LF K    +   + VTW+ +IA Y Q GH  EA+  F QM+
Sbjct: 569 KNALIDMYAKCGSLPSAEFLFNKT---DFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
                PN VT VS+L   A + A   G   H   I+           + +V N+LIDMYA
Sbjct: 626 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM------GFLSNTLVGNSLIDMYA 679

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +D +  +F+ +   ++D  +W  M+  Y+ +G  + A+ALF  M  Q+  V+ ++ 
Sbjct: 680 KCGQLDYSEKLFNEM--DHKDTVSWNAMLSGYAVHGHGDRAIALFSLM--QESQVQIDSV 735

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           +    L AC     +  GR+I  + + ++Y  + P + +  C++D+  R+G  D      
Sbjct: 736 SFVSVLSACRHAGLVEEGRKIF-HSMSDKYH-IKPDLEHYACMVDLLGRAGLFDETLGFI 793

Query: 521 DNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYACS---- 574
             +  + +   W +L+    MH        A D + K E   P     L  +YA S    
Sbjct: 794 KVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWA 853

Query: 575 -----HSGMVDQGLK 584
                 S M D GLK
Sbjct: 854 DAGKARSKMNDLGLK 868



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 242/510 (47%), Gaps = 46/510 (9%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN--ALMAMYARCDTLSYARQLFDE 195
           +P +L +C  L        +HA I  SGF  +  + +   L +++ +CD    AR +FD 
Sbjct: 35  YPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSITHLINLYSLFHKCD---LARSVFDS 88

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-- 253
              P     + WN+++ AY +S      L ++  M  +  ++ D  +    L AC     
Sbjct: 89  TPNPSR---ILWNSMIRAYTRSKQYNEALEMYYCMV-EKGLEPDKYTFTFVLKACTGALN 144

Query: 254 ---GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
              G W  G      E  ++  ER    DV     +V  YS++G  + A  +F KM    
Sbjct: 145 LQEGVWFHG------EIDRRGLER----DVFIGAGLVDMYSKMGDLKRAREVFDKMP--- 191

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
            K +VV W+A+IAG +Q     EA+D FR MQ  G+EP+ V+L++L  G   +  + L +
Sbjct: 192 -KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H Y  +R  S          V N LID+Y+KC  VDVAR +FD +   ++D  +W  M
Sbjct: 251 SIHGYVFRRDFSS--------AVSNGLIDLYSKCGDVDVARRVFDQMV--DQDDVSWGTM 300

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           +  Y+ NG   + L LF +M   +  V+ N  +   A +A A    L  G++IH   L+ 
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGN--VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQ 358

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
           + +  I  VA  L+ MY++ G+ + A+ +F  L+ R++V+W++++      G  ++A   
Sbjct: 359 RIDSDI-LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M+ + + P+ VT + +L AC+   ++  G K     + +  + +       +V +  
Sbjct: 418 FQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYA 476

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +      A+     M      + W +L+NG
Sbjct: 477 KCGFFTAALTTFNRMSSRDI-VTWNSLING 505



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 185/399 (46%), Gaps = 42/399 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y      + AL+   R+S     +  WN+LI    ++  P NA  +F ++     +
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSR--DIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD  T   V+ AC  L     G+ +H +I   GF+S+  V NAL+ MYA+C +L  A  L
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F++       D V+WN I+AAY Q+G A+  +  F +M  +     + V+ V+ L A A 
Sbjct: 589 FNK--TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE-NFHPNSVTFVSVLPAAAY 645

Query: 253 LGTWSRG--------------------------KQCGMMEEAKKVFERMKVKDVVSWNAM 286
           L  +  G                           +CG ++ ++K+F  M  KD VSWNAM
Sbjct: 646 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 705

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           ++GY+  G  + A ALF  M++  V+++ V++ +V++     G   E   +F  M     
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 765

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           ++P++     ++      G   L  ET  +   +V+ V+     D  V  AL+       
Sbjct: 766 IKPDLEHYACMVDLLGRAG---LFDETLGFI--KVMPVE----PDAGVWGALLGSCRMHS 816

Query: 406 SVDVARVMFDAIAP-KNRDVATWTVMIGSYSQNGGANDA 443
           +V +  V  D +   + R+ A + V+   Y+Q+G   DA
Sbjct: 817 NVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADA 855


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/790 (36%), Positives = 420/790 (53%), Gaps = 107/790 (13%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT----LSYARQLF 193
           +  +L+ C    +   G ++HA    +G   + ++CN L+A YA           AR LF
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD-------------------- 233
           D++      +  +WN++++ YA+SG      ++FA M                       
Sbjct: 272 DDI-PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWD 330

Query: 234 -VKVQGDGVS---------LVNALSACASLGTWSRGKQ---------------------- 261
            VK   D VS         L N LS+CA++     G++                      
Sbjct: 331 AVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLY 390

Query: 262 ----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
               CG  E A+ VFERM+V+ V SWN MV+ Y+  G  E A ++F+ M    V+ ++V+
Sbjct: 391 MYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENM----VERSIVS 446

Query: 318 WSAVIAGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           W+ +IAGY Q G    AL  F R +    +EP+  T+ S+LS CA++  L +GK+ H Y 
Sbjct: 447 WNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYI 506

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP----------------- 419
           ++  +      P    ++NALI  YAK  SV+ AR + D                     
Sbjct: 507 LRTGM------PCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVK 560

Query: 420 --------------KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
                          NRDV  WT MI  Y QNG  ++A+ LF  M       +PN+ TL+
Sbjct: 561 LGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGP--EPNSHTLA 618

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-K 524
             L ACA LA L +G+QIH   +R+  E  +  V+N +I +Y+RSG +  AR VFD +  
Sbjct: 619 AVLSACASLAYLDYGKQIHCKAIRSLQEQSVS-VSNAIITVYARSGSVPLARRVFDQICW 677

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           ++  ++WTS++     HGLG++A   F++M + G+ PD +T++ +L AC+H+G VD+G +
Sbjct: 678 RKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKR 737

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           Y++ M  E GI  +  HYAC+VDL  RA  L EA E I+ MP+ P  ++W +LL  CR+ 
Sbjct: 738 YYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVR 797

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N +L ELAA +LL ++    G+Y+ L+N+Y+  GRW D ARI  L K  GVKK  G SW
Sbjct: 798 KNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSW 857

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
              +     F   D  HPQ   IY   A + + IK  G+VP  +  LHDVDDE K +LL 
Sbjct: 858 THVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLS 917

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLA+A+G+++T   T +RI KNLR+C DCH+AI FIS  ++ EII+RD+ RFHHF+
Sbjct: 918 RHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFR 977

Query: 825 EGSCTCKGYW 834
           +G C+CK YW
Sbjct: 978 DGYCSCKDYW 987



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 230/477 (48%), Gaps = 74/477 (15%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
           +A + FL M+  G+ P ++T   VL +C  + +   G  VH  +   G  S V V N+++
Sbjct: 330 DAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVL 389

Query: 178 AMYARCDTLSYARQLFDEMFQPGIC----------------------------DIVSWNT 209
            MY +C     AR +F+ M    +                              IVSWNT
Sbjct: 390 YMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNT 449

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------- 261
           I+A Y Q+G     L  F+RM     ++ D  ++ + LSACA+L     GKQ        
Sbjct: 450 IIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT 509

Query: 262 ------------------CGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFA 301
                              G +E A+++ ++  V D  V+S+ A++ GY ++G  + A  
Sbjct: 510 GMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQARE 569

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  M       +V+ W+A+I GY Q G   EA+++FR M   G EPN  TL ++LS CA
Sbjct: 570 IFDIMNNR----DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACA 625

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           S+  L  GK+ HC  I+ +          + V NA+I +YA+  SV +AR +FD I  + 
Sbjct: 626 SLAYLDYGKQIHCKAIRSL------QEQSVSVSNAIITVYARSGSVPLARRVFDQICWR- 678

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           ++  TWT MI + +Q+G    A+ LF +M +    VKP+  T    L ACA    +  G+
Sbjct: 679 KETITWTSMIVAMAQHGLGEQAVVLFEEMVRVG--VKPDHITYVGVLSACAHAGFVDKGK 736

Query: 482 QIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLM 535
           + +   ++N++  ++P +++  C++D+++R+G +  A      +    + V W SL+
Sbjct: 737 RYYEQ-MQNEHG-IVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLL 791



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 28/284 (9%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIR 108
           S+     I  Q +V +L  +  + L+  YV       A  +   ++     V  W A+I 
Sbjct: 530 SVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNR--DVIAWTAMIV 587

Query: 109 RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
              +    D A  LF  M+  G  P+ +T   VL AC  L     G  +H     S  + 
Sbjct: 588 GYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQ 647

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC---DIVSWNTIVAAYAQSGDAEGGLM 225
           +V V NA++ +YAR  ++  AR++FD+     IC   + ++W +++ A AQ G  E  ++
Sbjct: 648 SVSVSNAIITVYARSGSVPLARRVFDQ-----ICWRKETITWTSMIVAMAQHGLGEQAVV 702

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----VKDV 280
           LF  M   V V+ D ++ V  LSACA           G +++ K+ +E+M+     V  +
Sbjct: 703 LFEEMV-RVGVKPDHITYVGVLSACA---------HAGFVDKGKRYYEQMQNEHGIVPQM 752

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
             +  MV  ++R G   +A    ++M    V  + V W +++A 
Sbjct: 753 SHYACMVDLHARAGLLTEAHEFIQRM---PVAPDTVVWGSLLAA 793


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 291/784 (37%), Positives = 421/784 (53%), Gaps = 33/784 (4%)

Query: 56  IHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH QII       P   + L++ Y        A  +   ISP    V  +N ++    + 
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR--DVVSYNTMLGLYAQK 207

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
                   LF QM   G  PD+ T+  +L A         G  +H +    G +S++ V 
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICD--IVSWNTIVAAYAQSGDAEGGLMLFARMT 231
            AL+ M  RC  +  A+Q F      GI D  +V +N ++AA AQ G        + RM 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFK-----GIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            D  V  +  + ++ L+AC++      GK          + E     DV   NA+++ Y+
Sbjct: 323 SD-GVALNRTTYLSILNACSTSKALEAGKLI-----HSHISEDGHSSDVQIGNALISMYA 376

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           R G    A  LF  M     K ++++W+A+IAGYA+R    EA+ +++QMQ  G++P  V
Sbjct: 377 RCGDLPKARELFYTM----PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRV 432

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T + LLS CA+  A   GK  H   ++  +  +G       + NAL++MY +C S+  A+
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGH------LANALMNMYRRCGSLMEAQ 486

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F+    + RDV +W  MI  ++Q+G    A  LF +M  Q++ ++P+  T +  L  C
Sbjct: 487 NVFEGT--QARDVISWNSMIAGHAQHGSYETAYKLFQEM--QNEELEPDNITFASVLSGC 542

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
               AL  G+QIH  +  +  ++ +  + N LI+MY R G +  AR VF +L+ R+V+SW
Sbjct: 543 KNPEALELGKQIHGRITESGLQLDVN-LGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGL-APDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           T+++ G    G   KA   F QM+ EG   PDG TF  +L AC+H+G+V +G + F SM 
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSME 661

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
            E+G+    EHY C+V LLGRA R  EA  LI  MP  P   +W  LL  CRIH N+ L 
Sbjct: 662 SEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALA 721

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E AAN  L+L +     Y LLSN+YA AGRW DVA+IR +M+  G++K PG SW++    
Sbjct: 722 EHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 781

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F   DR+HP++ +IY  L  L   ++  GY P T   LHD+    +   L  HSE+L
Sbjct: 782 IHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERL 841

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+AYG++ T PGTPIRI KNLRICGDCH+A  FIS ++  EII RDSNRFH FK G C+C
Sbjct: 842 AIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSC 901

Query: 831 KGYW 834
           + YW
Sbjct: 902 EDYW 905



 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 168/544 (30%), Positives = 272/544 (50%), Gaps = 30/544 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+LI    +      AF+LF +M   G+ P++ T+  +L AC        G  +H+
Sbjct: 93  VISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHS 152

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--DIVSWNTIVAAYAQS 217
            I  +G+  +  V N+L++MY +C  L  ARQ+F      GI   D+VS+NT++  YAQ 
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF-----AGISPRDVVSYNTMLGLYAQK 207

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
              +  L LF +M+ +  +  D V+ +N L A  +      GK+       K   E    
Sbjct: 208 AYVKECLGLFGQMSSE-GISPDKVTYINLLDAFTTPSMLDEGKRI-----HKLTVEEGLN 261

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+    A+VT   R G  + A   FK +       +VV ++A+IA  AQ GH  EA + 
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKGI----ADRDVVVYNALIAALAQHGHNVEAFEQ 317

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           + +M+  G+  N  T +S+L+ C++  AL  GK  H +     +S DG H  D+ + NAL
Sbjct: 318 YYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH-----ISEDG-HSSDVQIGNAL 371

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MYA+C  +  AR +F  + PK RD+ +W  +I  Y++     +A+ L+ QM  Q + V
Sbjct: 372 ISMYARCGDLPKARELFYTM-PK-RDLISWNAIIAGYARREDRGEAMRLYKQM--QSEGV 427

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP   T    L ACA  +A   G+ IH  +LR+  +     +AN L++MY R G +  A+
Sbjct: 428 KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKS-NGHLANALMNMYRRCGSLMEAQ 486

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VF+  + R+V+SW S++ G+  HG  + A+  F +M+ E L PD +TF  +L  C +  
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            ++ G K       E G+         ++++  R   L +A  +   +      + W A+
Sbjct: 547 ALELG-KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV-MSWTAM 604

Query: 638 LNGC 641
           + GC
Sbjct: 605 IGGC 608



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 156/606 (25%), Positives = 281/606 (46%), Gaps = 66/606 (10%)

Query: 129 RGWHPDEYTFPFVLKACGE---LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           R    D  T+  +L+ C     LP ++    +HA +  +G   ++F+ N L+ MY +C +
Sbjct: 21  RPTETDRATYVALLQNCTRKRLLPEAK---RIHAQMVEAGVGPDIFLSNLLINMYVKCRS 77

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  A Q+F EM +    D++SWN++++ YAQ G  +    LF  M  +     + ++ ++
Sbjct: 78  VLDAHQVFKEMPRR---DVISWNSLISCYAQQGFKKKAFQLFEEMQ-NAGFIPNKITYIS 133

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            L+AC S      GK+        ++ +    +D    N++++ Y + G    A  +F  
Sbjct: 134 ILTACYSPAELENGKKI-----HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           +       +VV+++ ++  YAQ+ +  E L +F QM   G+ P+ VT ++LL    +   
Sbjct: 189 ISPR----DVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK  H  T++  L+       D+ V  AL+ M  +C  VD A+  F  IA  +RDV 
Sbjct: 245 LDEGKRIHKLTVEEGLN------SDIRVGTALVTMCVRCGDVDSAKQAFKGIA--DRDVV 296

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            +  +I + +Q+G   +A   + +M  +   V  N  T    L AC+   AL  G+ IH+
Sbjct: 297 VYNALIAALAQHGHNVEAFEQYYRM--RSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           ++  + +   +  + N LI MY+R GD+  AR +F  + +R+++SW +++ GY       
Sbjct: 355 HISEDGHSSDVQ-IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRG 413

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   + QM+ EG+ P  VTFL LL AC++S     G    + + +  GI +       +
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANAL 472

Query: 606 VDLLGRANRLDEAVELIEGM----------------------------------PMEPTP 631
           +++  R   L EA  + EG                                    +EP  
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSY-TLLSNIYANAGRWKDVARIRSL 690
           I + ++L+GC+    +ELG+    R+ E   + D +    L N+Y   G  +D   +   
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 691 MKHTGV 696
           ++H  V
Sbjct: 593 LQHRDV 598



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 214/442 (48%), Gaps = 28/442 (6%)

Query: 264 MMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
           ++ EAK++  +M       D+   N ++  Y +  S  DA  +FK+M     + +V++W+
Sbjct: 42  LLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM----PRRDVISWN 97

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           ++I+ YAQ+G   +A  +F +MQ  G  PN +T +S+L+ C S   L  GK+ H   IK 
Sbjct: 98  SLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIK- 156

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
                  +  D  V N+L+ MY KC  +  AR +F  I+P  RDV ++  M+G Y+Q   
Sbjct: 157 -----AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISP--RDVVSYNTMLGLYAQKAY 209

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             + L LF QM  +   + P+  T    L A    + L  G++IH   +       I  V
Sbjct: 210 VKECLGLFGQMSSEG--ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR-V 266

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
              L+ M  R GD+D+A+  F  +  R+VV + +L+     HG   +A   + +MR +G+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
           A +  T+L +L ACS S  ++ G K   S   E G S+  +    ++ +  R   L +A 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAR 385

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLS--NIY 675
           EL   MP     I W A++ G   +A  E    A     +++SE  K G  T L   +  
Sbjct: 386 ELFYTMPKRDL-ISWNAIIAG---YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 676 ANAGRWKDVARIRSLMKHTGVK 697
           AN+  + D   I   +  +G+K
Sbjct: 442 ANSSAYADGKMIHEDILRSGIK 463



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            Q +  + +  T    L  C R   L   ++IHA ++       I F++N LI+MY +  
Sbjct: 18  HQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDI-FLSNLLINMYVKCR 76

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            +  A  VF  + +R+V+SW SL++ Y   G   KA   F++M+  G  P+ +T++ +L 
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT 136

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           AC     ++ G K    + K  G          ++ + G+   L  A ++  G+
Sbjct: 137 ACYSPAELENGKKIHSQIIKA-GYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI 189


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 282/763 (36%), Positives = 424/763 (55%), Gaps = 79/763 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT-----------FPFVLKACGELPSS 151
           WN  I   +R    + A R+F +M R  W    Y            F    K   E+P  
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPR--WSSVSYNGMISGYLRNGEFELARKLFDEMP-- 122

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
                          + ++   N ++  Y R   L  AR+LF+ M +  +C   SWNT++
Sbjct: 123 ---------------ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC---SWNTML 164

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDG-----VSLVNALSAC---------------A 251
           + YAQ+G  +    +F RM     V  +      V       AC                
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            LG + + K+   + EA++ F+ M V+DVVSWN ++TGY++ G  ++A  LF     E+ 
Sbjct: 225 LLGGFVKKKK---IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESP 277

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             +V TW+A+++GY Q     EA ++F +M     E N V+  ++L+G      + + KE
Sbjct: 278 VQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKE 333

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
                  R +S            N +I  YA+C  +  A+ +FD + PK RD  +W  MI
Sbjct: 334 LFDVMPCRNVST----------WNTMITGYAQCGKISEAKNLFDKM-PK-RDPVSWAAMI 381

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             YSQ+G + +AL LF QM ++   +  ++F  S AL  CA + AL  G+Q+H  +++  
Sbjct: 382 AGYSQSGHSFEALRLFVQMEREGGRLNRSSF--SSALSTCADVVALELGKQLHGRLVKGG 439

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           YE    FV N L+ MY + G I+ A  +F  +  +++VSW +++ GY  HG G+ A   F
Sbjct: 440 YETGC-FVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFF 498

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           + M++EGL PD  T + +L ACSH+G+VD+G +YF +M++++G+   ++HYAC+VDLLGR
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGR 558

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  L++A  L++ MP EP   IW  LL   R+H N EL E AA+++  +E E  G Y LL
Sbjct: 559 AGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLL 618

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+YA++GRW DV ++R  M+  GVKK PG SW++ +  T TF VGD  HP+  +I+  L
Sbjct: 619 SNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L  R+K  GYV +TS  LHDV++EEK  ++  HSE+LA+AYGI+  + G PIR+ KNL
Sbjct: 679 EELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNL 738

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCH+AI +++ I    IILRD+NRFHHFK+GSC+C  YW
Sbjct: 739 RVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 183/400 (45%), Gaps = 56/400 (14%)

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV---SLVNALSACA- 251
           + + G  DI  WN  +++Y ++G     L +F RM     V  +G+    L N     A 
Sbjct: 56  LLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELAR 115

Query: 252 ---------SLGTWS-------RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                     L +W+       R +  G   +A+++FE M  +DV SWN M++GY++ G 
Sbjct: 116 KLFDEMPERDLVSWNVMIKGYVRNRNLG---KARELFEIMPERDVCSWNTMLSGYAQNGC 172

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            +DA ++F +M ++    N V+W+A+++ Y Q     EA  +F+  +   L    V+   
Sbjct: 173 VDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNC 224

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL G      ++  ++            D  +  D++  N +I  YA+   +D AR +FD
Sbjct: 225 LLGGFVKKKKIVEARQF----------FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
             +P  +DV TWT M+  Y QN    +A  LF      DK+ + N  + +  L    +  
Sbjct: 275 E-SPV-QDVFTWTAMVSGYIQNRMVEEARELF------DKMPERNEVSWNAMLAGYVQGE 326

Query: 476 ALRFGRQIHAYV-LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            +   +++   +  RN          N +I  Y++ G I  A+ +FD + +R+ VSW ++
Sbjct: 327 RMEMAKELFDVMPCRN------VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAM 380

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           + GY   G   +A   F QM +EG   +  +F   L  C+
Sbjct: 381 IAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 127/292 (43%), Gaps = 27/292 (9%)

Query: 73  LIAAYVSHNAPSPALSLLQRISP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           +I  Y      S A +L  ++    P S   W A+I    +      A RLF+QM R G 
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVS---WAAMIAGYSQSGHSFEALRLFVQMEREGG 405

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             +  +F   L  C ++ +   G  +H  +   G+++  FV NAL+ MY +C ++  A  
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LF EM      DIVSWNT++A Y++ G  E  L  F  M  +  ++ D  ++V  LSAC+
Sbjct: 466 LFKEMAGK---DIVSWNTMIAGYSRHGFGEVALRFFESMKRE-GLKPDDATMVAVLSACS 521

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA-----MVTGYSRIGSFEDAFALFKKM 306
             G   +G+Q          F  M     V  N+     MV    R G  EDA  L K M
Sbjct: 522 HTGLVDKGRQ---------YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
             E    +   W  ++   A R HG+  L      +   +EP    +  LLS
Sbjct: 573 PFEP---DAAIWGTLLG--ASRVHGNTELAETAADKIFAMEPENSGMYVLLS 619



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 164/397 (41%), Gaps = 74/397 (18%)

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           N     A+  +  R  Q  + +   K   +    D+  WN  ++ Y R G   +A  +FK
Sbjct: 29  NNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFK 88

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M     + + V+++ +I+GY + G    A  +F +M                       
Sbjct: 89  RM----PRWSSVSYNGMISGYLRNGEFELARKLFDEM----------------------- 121

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
                                  P+ DL+  N +I  Y + +++  AR +F+ I P+ RD
Sbjct: 122 -----------------------PERDLVSWNVMIKGYVRNRNLGKARELFE-IMPE-RD 156

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           V +W  M+  Y+QNG  +DA ++F      D++ + N  + +  L A  + + +      
Sbjct: 157 VCSWNTMLSGYAQNGCVDDARSVF------DRMPEKNDVSWNALLSAYVQNSKME----- 205

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
            A +L    E       NCL+  + +   I  AR  FD++  R+VVSW +++TGY   G 
Sbjct: 206 EACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
            D+A   FD    E    D  T+  ++     + MV++  + FD M +   +S  A    
Sbjct: 266 IDEARQLFD----ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAG 321

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +     +  R++ A EL + MP       W  ++ G
Sbjct: 322 YV-----QGERMEMAKELFDVMPCRNVS-TWNTMITG 352


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/767 (36%), Positives = 429/767 (55%), Gaps = 38/767 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           LI  Y   N    A  + + +   P   V  WN+LI         + A  ++ +    G 
Sbjct: 215 LIDMYCRFNDLDKARKVFEEM---PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 271

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            PD YT   VL+ACG L S   G  +H +I   G   +V V N L++MY + + L   R+
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD+M    + D VSWNT++  Y+Q G  E  + LF  M    K   D +++ + L AC 
Sbjct: 332 IFDKMV---LRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK--PDLLTITSILQACG 386

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
            LG          +E  K V + M       D  + N ++  Y++ G+   +  +F  M+
Sbjct: 387 HLGD---------LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 437

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            ++     V+W+++I  Y Q G   EA+ +F+ M+   ++P+ VT V LLS    +G L 
Sbjct: 438 CKDS----VSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLX 492

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LGKE HC   K   +       +++V N L+DMYAKC  +  +  +F+ +  K RD+ TW
Sbjct: 493 LGKELHCDLAKMGFN------SNIVVSNTLVDMYAKCGEMGDSLKVFENM--KARDIITW 544

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             +I S   +   N  L +  +M  +   V P+  T+   L  C+ LAA R G++IH  +
Sbjct: 545 NTIIASCVHSEDCNLGLRMISRMRTEG--VTPDMATMLSILPVCSLLAAKRQGKEIHGCI 602

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
            +   E  +P V N LI+MYS+ G +  +  VF  +K ++VV+WT+L++  GM+G G KA
Sbjct: 603 FKLGLESDVP-VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 661

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
             AF +M   G+ PD V F+ +++ACSHSG+V++GL YF  M K++ I  R EHYAC+VD
Sbjct: 662 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 721

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LL R+  LD+A + I  MP++P   IW ALL+ CR+  + E+ +  + R++EL  +  G 
Sbjct: 722 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGY 781

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y L+SN+YA  G+W  V  IR  +K  G+KK PGCSW++ +     F  G +   Q +++
Sbjct: 782 YVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEV 841

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
            ++L  L   +   GY+    F LHD+D++EK D+L  HSE+LA+A+G+L T PGTP+++
Sbjct: 842 NKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQV 901

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+C DCH+   +IS I   E+++RD+NRFH FK+G+C+C  YW
Sbjct: 902 MKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 182/681 (26%), Positives = 319/681 (46%), Gaps = 97/681 (14%)

Query: 21  HLFTNIKLFS-VTTT-----PCIKIT-----SLLLRQCKSLTQVYLIHQQIIVQNLTH-- 67
             +T+ KLFS V  T      C + T     S  L    + TQ++ +H  II   L H  
Sbjct: 48  EFYTSTKLFSRVMKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSV 107

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           +  + LIA Y     P+ + S+ +  SPS  +V+ WN++IR      L   A  L+ +  
Sbjct: 108 IFSAKLIAKYAHFRDPTSSFSVFRLASPSN-NVYXWNSIIRALTHNGLFSEALSLYSETQ 166

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           R    PD YTFP V+ AC  L       S+H  +   GF S++++ NAL+ MY R + L 
Sbjct: 167 RIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLD 226

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            AR++F+EM    + D+VSWN++++ Y  +G     L ++ R   ++ V  D  ++ + L
Sbjct: 227 KARKVFEEM---PLRDVVSWNSLISGYNANGYWNEALEIYYRFR-NLGVVPDSYTMSSVL 282

Query: 248 SACASLGTWSRGKQC-GMME-------------------------EAKKVFERMKVKDVV 281
            AC  LG+   G    G++E                         + +++F++M ++D V
Sbjct: 283 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 342

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWN M+ GYS++G +E++  LF +M  +                                
Sbjct: 343 SWNTMICGYSQVGLYEESIKLFMEMVNQ-------------------------------- 370

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
                +P+++T+ S+L  C  +G L  GK  H Y I         +  D    N LI+MY
Sbjct: 371 ----FKPDLLTITSILQACGHLGDLEFGKYVHDYMIT------SGYECDTTASNILINMY 420

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC ++  ++ +F  +  K +D  +W  MI  Y QNG  ++A+ LF +M + D  VKP++
Sbjct: 421 AKCGNLLASQEVFSGM--KCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD--VKPDS 475

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T    L    +L  L  G+++H  + +  +   I  V+N L+DMY++ G++  +  VF+
Sbjct: 476 VTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNI-VVSNTLVDMYAKCGEMGDSLKVFE 534

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           N+K R++++W +++         +       +MR EG+ PD  T L +L  CS      Q
Sbjct: 535 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 594

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G +    + K  G+ +       ++++  +   L  + ++ + M  +   + W AL++ C
Sbjct: 595 GKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV-VTWTALISAC 652

Query: 642 RIHANVELGELAANRLLELES 662
            ++     G+ A     E+E+
Sbjct: 653 GMYGE---GKKAVRAFGEMEA 670


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/715 (37%), Positives = 415/715 (58%), Gaps = 23/715 (3%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
           F+  L     G  PD  T   V+ AC  +   R G  VH +    G    V V N+L+ M
Sbjct: 284 FKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDM 343

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y++C  L  AR LFD     G  ++VSWNTI+  Y++ GD  G   L   M  + KV+ +
Sbjct: 344 YSKCGYLGEARALFD---MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVN 400

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
            V+++N L AC+        +   + E     F    +KD +  NA V  Y++  S + A
Sbjct: 401 EVTVLNVLPACSG-----EHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCA 455

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +F  M  + V     +W+A+I  +AQ G   ++LD+F  M   G++P+  T+ SLL  
Sbjct: 456 ERVFCGMEGKTVS----SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLA 511

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA +  L  GKE H + ++     +G   D+ + I +L+ +Y +C S+ + +++FD +  
Sbjct: 512 CARLKFLRCGKEIHGFMLR-----NGLELDEFIGI-SLMSLYIQCSSMLLGKLIFDKM-- 563

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           +N+ +  W VMI  +SQN    +AL  F QM      +KP    ++  L AC++++ALR 
Sbjct: 564 ENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGG--IKPQEIAVTGVLGACSQVSALRL 621

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+++H++ L+        FV   LIDMY++ G ++ ++ +FD + +++   W  ++ GYG
Sbjct: 622 GKEVHSFALKAHLSE-DAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYG 680

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           +HG G KA   F+ M+ +G  PD  TFL +L AC+H+G+V +GLKY   M   +G+  + 
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKL 740

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           EHYAC+VD+LGRA +L EA++L+  MP EP   IW +LL+ CR + ++E+GE  + +LLE
Sbjct: 741 EHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE 800

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           LE  K  +Y LLSN+YA  G+W +V ++R  MK  G+ K  GCSW++       F V D 
Sbjct: 801 LEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDG 860

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
           +  +S+KI +    L ++I  +GY P TS  LH++++E K  +L  HSEKLA+++G+L T
Sbjct: 861 SLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNT 920

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A GT +R+ KNLRIC DCH+AI  +S ++  +II+RD+ RFHHFK G CTC  +W
Sbjct: 921 AKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 18/300 (6%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DVV    ++  YS  GS  D+  +F   +++++ L    ++A+++GY++     +A+ +F
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFL----YNALLSGYSRNALFRDAISLF 182

Query: 339 RQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            ++     L P+  TL  +   CA V  + LG+  H       L++      D  V NAL
Sbjct: 183 LELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH------ALALKAGGFSDAFVGNAL 236

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF--QQDK 455
           I MY KC  V+ A  +F+ +  +NR++ +W  ++ + S+NGG  +   +F ++   +++ 
Sbjct: 237 IAMYGKCGFVESAVKVFETM--RNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEG 294

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           LV P+  T+   + ACA +  +R G  +H    +      +  V N L+DMYS+ G +  
Sbjct: 295 LV-PDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVT-VNNSLVDMYSKCGYLGE 352

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKEGLAPDGVTFLVLLYACS 574
           AR +FD    +NVVSW +++ GY   G          +M R+E +  + VT L +L ACS
Sbjct: 353 ARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 170/398 (42%), Gaps = 71/398 (17%)

Query: 76  AYVSHNAPSPALSLLQRI--SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           A+V+  A   +L   +R+       +V  WNALI    +   P  +  LFL MM  G  P
Sbjct: 441 AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDP 500

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D +T   +L AC  L   RCG  +H  +  +G + + F+  +LM++Y +C ++   + +F
Sbjct: 501 DRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIF 560

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACAS 252
           D+M       +V WN ++  ++Q+      L  F +M +G +K Q   +++   L AC+ 
Sbjct: 561 DKMENK---SLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQ--EIAVTGVLGACSQ 615

Query: 253 LGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
           +     GK+                          CG ME+++ +F+R+  KD   WN +
Sbjct: 616 VSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVI 675

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCG 345
           + GY   G    A  LF+ M+ +  + +  T+  V+      G   E L    QMQ   G
Sbjct: 676 IAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYG 735

Query: 346 LEPN------VVTLV--------------------------SLLSGCASVGALLLGKETH 373
           ++P       VV ++                          SLLS C + G L +G+E  
Sbjct: 736 VKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVS 795

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
               K++L ++ +  ++ ++++ L     K   V   R
Sbjct: 796 ----KKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVR 829



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 134/273 (49%), Gaps = 17/273 (6%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHP--DDLMVINALIDMYAKCKSVDVARVM 413
           LL  C     + +G++ H         V  SH   +D+++   +I MY+ C S   +R +
Sbjct: 98  LLRACGHHKNIHVGRKVHAL-------VSASHKLRNDVVLSTRIIAMYSACGSPSDSRGV 150

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FDA   K +D+  +  ++  YS+N    DA++LF ++     L  P+ FTL C   ACA 
Sbjct: 151 FDA--AKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLA-PDNFTLPCVAKACAG 207

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +A +  G  +HA  L+        FV N LI MY + G +++A  VF+ ++ RN+VSW S
Sbjct: 208 VADVELGEAVHALALK-AGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNS 266

Query: 534 LMTGYGMHGLGDKAHWAFDQM---RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           +M     +G   +    F ++    +EGL PD  T + ++ AC+  G V  G+     ++
Sbjct: 267 VMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-VVHGLA 325

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
            + GI+        +VD+  +   L EA  L +
Sbjct: 326 FKLGITEEVTVNNSLVDMYSKCGYLGEARALFD 358


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/575 (43%), Positives = 368/575 (64%), Gaps = 16/575 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG + +A+ +F+ M  +D+ SWN M+ GY+++G  E A  LF +M Q +      +W+A
Sbjct: 134 KCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDN----FSWNA 189

Query: 321 VIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
            I+GY       EAL++FR MQ       N  TL S L+  A++  L LGKE H Y I+ 
Sbjct: 190 AISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRT 249

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L++D       +V +AL+D+Y KC S+D AR +FD +  K+RDV +WT MI    ++G 
Sbjct: 250 ELNLDE------VVWSALLDLYGKCGSLDEARGIFDQM--KDRDVVSWTTMIHRCFEDGR 301

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +   LF  + Q    V+PN +T +  L ACA  AA   G+++H Y++   Y+    F 
Sbjct: 302 REEGFLLFRDLMQSG--VRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPG-SFA 358

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            + L+ MYS+ G+   AR VF+ + Q ++VSWTSL+ GY  +G  D+A   F+ + + G 
Sbjct: 359 ISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGT 418

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD VT++ +L AC+H+G+VD+GL+YF S+ ++ G+   A+HYAC++DLL R+ R  EA 
Sbjct: 419 KPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAE 478

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I+ MP++P   +W +LL GCRIH N+EL + AA  L E+E E   +Y  L+NIYANAG
Sbjct: 479 NIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAG 538

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
            W +VA +R  M + G+ K+PG SW++ K     F VGD +HP++  I+E L  L ++IK
Sbjct: 539 LWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIK 598

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVP T+F LHDV++E+K   L  HSEKLA+ +GI++T PGTPI++ KNLR C DCH+
Sbjct: 599 EEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHT 658

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI +IS I+  +I +RDSNRFH F++GSC+CK YW
Sbjct: 659 AIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 217/491 (44%), Gaps = 62/491 (12%)

Query: 124 LQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
           ++++ R  H P    +  ++ AC    +   G  VHA   +S F   VF+ N L+ MYA+
Sbjct: 75  VELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAK 134

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           C +L  A+ LFDEM   G  D+ SWNT++  YA+ G  E    LF  M      Q D  S
Sbjct: 135 CGSLVDAQMLFDEM---GHRDLCSWNTMIVGYAKLGRLEQARKLFDEMP-----QRDNFS 186

Query: 243 LVNALS----------ACASLGTWSRGKQCG--------------------MMEEAKKVF 272
              A+S          A        R ++                      + +E     
Sbjct: 187 WNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYL 246

Query: 273 ERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            R ++  D V W+A++  Y + GS ++A  +F +M+      +VV+W+ +I    + G  
Sbjct: 247 IRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR----DVVSWTTMIHRCFEDGRR 302

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            E   +FR +   G+ PN  T   +L+ CA   A  LGKE H Y +       G  P   
Sbjct: 303 EEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA-----GYDPGSF 357

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
             I+AL+ MY+KC +  VAR +F+ +     D+ +WT +I  Y+QNG  ++AL  F  + 
Sbjct: 358 -AISALVHMYSKCGNTRVARRVFNEM--HQPDLVSWTSLIVGYAQNGQPDEALHFFELLL 414

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           Q     KP+  T    L AC     +  G +    +      M       C+ID+ +RSG
Sbjct: 415 QSG--TKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSG 472

Query: 512 DIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFL 567
               A  + DN+  + +   W SL+ G  +HG   L  +A  A  ++  E  A    T++
Sbjct: 473 RFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPA----TYI 528

Query: 568 VLLYACSHSGM 578
            L    +++G+
Sbjct: 529 TLANIYANAGL 539



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 142/312 (45%), Gaps = 19/312 (6%)

Query: 54  YLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           YLI  ++   NL  V  S L+  Y    +   A  +  ++      V  W  +I R    
Sbjct: 245 YLIRTEL---NLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR--DVVSWTTMIHRCFED 299

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
              +  F LF  +M+ G  P+EYTF  VL AC +  +   G  VH  +  +G+D   F  
Sbjct: 300 GRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAI 359

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           +AL+ MY++C     AR++F+EM QP   D+VSW +++  YAQ+G  +  L  F  +   
Sbjct: 360 SALVHMYSKCGNTRVARRVFNEMHQP---DLVSWTSLIVGYAQNGQPDEALHFFELLL-Q 415

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
              + D V+ V  LSAC   G   +G +       K+    M   D   +  ++   +R 
Sbjct: 416 SGTKPDQVTYVGVLSACTHAGLVDKGLE--YFHSIKEKHGLMHTAD--HYACVIDLLARS 471

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP-NVVT 352
           G F++A  +   M    VK +   W++++ G   R HG+  L          +EP N  T
Sbjct: 472 GRFKEAENIIDNM---PVKPDKFLWASLLGGC--RIHGNLELAKRAAKALYEIEPENPAT 526

Query: 353 LVSLLSGCASVG 364
            ++L +  A+ G
Sbjct: 527 YITLANIYANAG 538


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 457/837 (54%), Gaps = 40/837 (4%)

Query: 14  KTPLTLNHLFTNIKLFSVTTTPCIKI--TSLLLRQCKSLTQVYL---IHQQIIVQNL--T 66
             P  L+   T + L    +T   K+  +SLLL+QC      +L   +H ++   NL   
Sbjct: 27  NNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLD 86

Query: 67  HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM 126
            +  + LI  Y   N P  A S+ Q +  S   V  ++++I      R    A  +F Q+
Sbjct: 87  TLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQL 146

Query: 127 M-RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-FDSNVFVCNALMAMYAR-C 183
           + + G +P+EY F  V++AC +    + G  +   +  +G FDS+V V   L+ M+ + C
Sbjct: 147 LLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGC 206

Query: 184 D--TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
               L  AR++FD+M +    ++V+W  ++   AQ G  +  + LF  M        D  
Sbjct: 207 SLADLESARKVFDKMREK---NVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRF 263

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           +L   +S CA +   S GK     E    V     V D+    ++V  Y++ G  ++A  
Sbjct: 264 TLTGLISVCAEIQFLSLGK-----ELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARK 318

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE--ALDVFRQMQF-CGLEPNVVTLVSLLS 358
           +F  MR+ NV    ++W+A++ GY + G G+E  A+ +F  M    G+ PN  T   +L 
Sbjct: 319 VFDGMREHNV----MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLK 374

Query: 359 GCASVGALLLGKETHCYTIKRVLS-VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
            CAS+     G++ H  TIK  LS +D        V N L+ +YAK   ++ AR  FD +
Sbjct: 375 ACASLPDFDFGEQVHGQTIKLGLSAID-------CVGNGLVSVYAKSGRMESARKCFDVL 427

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             KN  + + TV+  +  ++   N    L  ++      V  ++FT +  L   A +  +
Sbjct: 428 FEKN--LVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGV--SSFTYASLLSGAACIGTI 483

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G QIHA V++  +   +  V N LI MYS+ G+ + A  VF++++  NV++WTS++ G
Sbjct: 484 GKGEQIHAMVVKIGFRTDLS-VNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIING 542

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           +  HG   KA   F  M + G+ P+ VT++ +L ACSH G++D+  K+F SM    GI  
Sbjct: 543 FAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVP 602

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
           R EHYAC+VDLLGR+  L EA+E I  MP +   ++W   L  CR+H N +LGE AA  +
Sbjct: 603 RMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMI 662

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           LE E     +Y LLSN+YA  GRW+DVA IR  MK   + K  G SW++ +     F VG
Sbjct: 663 LEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVG 722

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D  HP++Q+IYE L  L  +IK +GYVP T F LHDV+DE+K   LF+HSEKLA+A+ ++
Sbjct: 723 DTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALI 782

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +T    PIR+ KNLR+CGDCH+AI +ISM+   EI++RD+NRFHH K+G+C+C  YW
Sbjct: 783 STPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/715 (37%), Positives = 405/715 (56%), Gaps = 61/715 (8%)

Query: 157 VHAVICSSGFDSNVFVCNALMAM---YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            HA +  +G  +  +  + L+ +       D L YA  +F+   +P   +++ WNT++  
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEP---NLLIWNTMLRG 57

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------- 262
            A S D    L ++ RM     V  +  +    L +CA   T+  G+Q            
Sbjct: 58  LASSSDLVSPLEMYVRMVSXGHVP-NAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCEL 116

Query: 263 ---------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                          G +E+A+KVF+    +DVVS  A++TGY+  G    A  +F  + 
Sbjct: 117 DRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXIT 176

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           + +V    V+W+A+I GY +     EAL++F++M    + P+  TLVS+LS CA  G++ 
Sbjct: 177 ERDV----VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIE 232

Query: 368 LGKETHCYTIKRVLSVDGSHP--DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           LG+E H         VD  H     L ++NA I +Y+KC  V++A  +F+ ++ K  DV 
Sbjct: 233 LGREIHTL-------VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK--DVV 283

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  +IG Y+      +AL LF +M +  +   PN  T+   L ACA L A+  GR IH 
Sbjct: 284 SWNTLIGGYTHMNLYKEALLLFQEMLRSGE--SPNDVTMLSVLPACAHLGAIDIGRWIHV 341

Query: 486 YVLRNQYEMLIPFVAN------CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           Y+ +      +  V N       LIDMY++ GDI+ A  VF+++  +++ SW +++ G+ 
Sbjct: 342 YIDKR-----LKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFA 396

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           MHG  + A   F +MRK G+ PD +T + LL ACSHSG++D G   F S+++++ I+ + 
Sbjct: 397 MHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKL 456

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           EHY C++DLLG A    EA E+I  MPMEP  +IW +LL  C++H N+EL E  A +L+E
Sbjct: 457 EHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLME 516

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           +E E  GSY LLSNIYA AGRW+DVARIR ++   G+KK PGCS ++       F +GD+
Sbjct: 517 IEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDK 576

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
            HPQS++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKLA+A+G+++T
Sbjct: 577 LHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 636

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PGT + + KNLR+C +CH A   IS I   EI+ RD  RFHHF++G C+C  YW
Sbjct: 637 KPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 224/499 (44%), Gaps = 106/499 (21%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++R         +   ++++M+  G  P+ YTFPF+LK+C +  +   G  +HA + 
Sbjct: 51  WNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVM 110

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------------------- 202
             G + + +   +L++MYAR   L  AR++FD   Q  +                     
Sbjct: 111 KLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARK 170

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   D+VSWN ++  Y ++   E  L LF  M     V+ D  +LV+ LSACA  G
Sbjct: 171 VFDXITERDVVSWNAMITGYVENCGYEEALELFKEMM-RTNVRPDEGTLVSVLSACAQSG 229

Query: 255 TWSRGKQ---------------------------CGMMEEAKKVFERMKVKDVVSWNAMV 287
           +   G++                           CG +E A  +FE +  KDVVSWN ++
Sbjct: 230 SIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLI 289

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
            GY+ +  +++A  LF++M +                                    G  
Sbjct: 290 GGYTHMNLYKEALLLFQEMLRS-----------------------------------GES 314

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKS 406
           PN VT++S+L  CA +GA+ +G+  H Y  KR+  V +GS      +  +LIDMYAKC  
Sbjct: 315 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGS-----ALRTSLIDMYAKCGD 369

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ A  +F+++  K+  +++W  MI  ++ +G AN A  LF +M +    ++P+  TL  
Sbjct: 370 IEAAHQVFNSMMHKS--LSSWNAMIFGFAMHGRANAAFDLFSRMRKNG--IEPDDITLVG 425

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK 524
            L AC+    L  GR I   V   Q   + P + +  C+ID+   +G    A  +   + 
Sbjct: 426 LLSACSHSGLLDLGRHIFKSV--TQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMP 483

Query: 525 -QRNVVSWTSLMTGYGMHG 542
            + + V W SL+    MHG
Sbjct: 484 MEPDGVIWCSLLKACKMHG 502



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 34/239 (14%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN LI     + L   A  LF +M+R G  P++ T   VL AC  L +   G  +H 
Sbjct: 282 VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHV 341

Query: 160 VICS--SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            I     G  +   +  +L+ MYA+C  +  A Q+F+ M    +    SWN ++  +A  
Sbjct: 342 YIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLS---SWNAMIFGFAMH 398

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------- 260
           G A     LF+RM  +  ++ D ++LV  LSAC+  G    G+                 
Sbjct: 399 GRANAAFDLFSRMRKN-GIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLE 457

Query: 261 ----------QCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       G+ +EA+++   M ++ D V W +++      G+ E A +  +K+ +
Sbjct: 458 HYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLME 516


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/796 (35%), Positives = 421/796 (52%), Gaps = 58/796 (7%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y      + A  + +R++     V  W+++I        P  AF  F +M      
Sbjct: 97  LINFYSKFEDVASAEQVFRRMTLR--DVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF  +LKAC        G  +H ++ + G +++V V  AL+ MY++C  +S A ++
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F +M +    ++VSW  I+ A AQ         L+ +M     +  + V+ V+ L++C +
Sbjct: 215 FHKMTER---NVVSWTAIIQANAQHRKLNEAFELYEQML-QAGISPNAVTFVSLLNSCNT 270

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
               +RG++         + ER    D++  NA++T Y +  S ++A  +F +M     K
Sbjct: 271 PEALNRGRRI-----HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS----K 321

Query: 313 LNVVTWSAVIAGYAQRGHGH-----EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            +V++WSA+IAGYAQ G+       E   +  +M+  G+ PN VT +S+L  C + GAL 
Sbjct: 322 RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------ 421
            G++ H    K    +D S      +  A+ +MYAKC S+  A  +F  +A KN      
Sbjct: 382 QGRQIHAELSKVGFELDRS------LQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTS 435

Query: 422 -----------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
                                  R+V +W +MI  Y+QNG       L   M  +    +
Sbjct: 436 FLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG--FQ 493

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+  T+   L AC  LA L  G+ +HA  ++   E     VA  LI MYS+ G +  AR 
Sbjct: 494 PDRVTVITILEACGALAGLERGKLVHAEAVKLGLES-DTVVATSLIGMYSKCGQVAEART 552

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD +  R+ V+W +++ GYG HG G +A   F +M KE ++P+ +T   ++ ACS +G+
Sbjct: 553 VFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGL 612

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G + F  M ++F ++ R +HY C+VDLLGRA RL EA E I+ MP EP   +W ALL
Sbjct: 613 VQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALL 672

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             C+ H NV+L E AA+ +LELE      Y  LSNIYA AGRW D  ++R +M   G+KK
Sbjct: 673 GACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKK 732

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             G S ++      TF   D  HP+   I+  L  L + +K  GY P   F LHDVDD +
Sbjct: 733 DRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQ 792

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K   L  HSEKLA+AYG+L T  GTPIRI KNLR+CGDCH+A  FIS I   EI+ RD+N
Sbjct: 793 KEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDAN 852

Query: 819 RFHHFKEGSCTCKGYW 834
           RFH+F  G+C+C  +W
Sbjct: 853 RFHYFNNGTCSCGDFW 868



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 177/634 (27%), Positives = 300/634 (47%), Gaps = 68/634 (10%)

Query: 109 RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
           +A RLR    A +L   + +RG   +  T+  V++ C +      G  VH  +   G + 
Sbjct: 33  KAGRLR---EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEI 89

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           ++++ N+L+  Y++ + ++ A Q+F  M    + D+V+W++++AAYA +         F 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRM---TLRDVVTWSSMIAAYAGNNHPAKAFDTFE 146

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
           RMT D  ++ + ++ ++ L AC +     +G++   + +A  +       DV    A++T
Sbjct: 147 RMT-DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGM-----ETDVAVATALIT 200

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            YS+ G    A  +F KM +     NVV+W+A+I   AQ    +EA +++ QM   G+ P
Sbjct: 201 MYSKCGEISVACEVFHKMTER----NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP 256

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           N VT VSLL+ C +  AL  G+  H +  +R L        D++V NALI MY KC SV 
Sbjct: 257 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET------DMIVANALITMYCKCNSVQ 310

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNG-----GANDALALFPQMFQQDKLVKPNAFT 463
            AR +FD ++   RDV +W+ MI  Y+Q+G       ++   L  +M ++   V PN  T
Sbjct: 311 EAREIFDRMSK--RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREG--VFPNKVT 366

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEM-------LIPFVANC-------------- 502
               L AC    AL  GRQIHA + +  +E+       +    A C              
Sbjct: 367 FMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA 426

Query: 503 ---------LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
                     + MY + GD+ +A  VF  +  RNVVSW  ++ GY  +G   K       
Sbjct: 427 NKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSS 486

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M+ EG  PD VT + +L AC     +++G K   + + + G+ +       ++ +  +  
Sbjct: 487 MKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCG 545

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN-VELGELAANRLLELESEKDGSYTLLS 672
           ++ EA  + + M    T + W A+L G   H + +E  +L    L E  S  + + T + 
Sbjct: 546 QVAEARTVFDKMSNRDT-VAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVI 604

Query: 673 NIYANAGRWKDVARIRSLM----KHTGVKKRPGC 702
           +  + AG  ++   I  +M    K T  K+  GC
Sbjct: 605 SACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGC 638


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/764 (35%), Positives = 442/764 (57%), Gaps = 28/764 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y  ++  S A  L         +V W N+++              LF +M   G  
Sbjct: 223 LVSMYAKNDDLSAARRLFDGFQEKGDAVLW-NSILSSYSTSGKSLETLELFREMHMTGPA 281

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           P+ YT    L AC     ++ G  +HA V+ SS   S ++VCNAL+AMY RC  +  A +
Sbjct: 282 PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAER 341

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +  +M      D+V+WN+++  Y Q+   +  L  F+ M      + D VS+ + ++A  
Sbjct: 342 ILRQMNNA---DVVTWNSLIKGYVQNLMYKEALEFFSDMIA-AGHKSDEVSMTSIIAASG 397

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            L     G     ME    V +     ++   N ++  YS+          F +M  +++
Sbjct: 398 RLSNLLAG-----MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDL 452

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               ++W+ VIAGYAQ     EAL++FR +    +E + + L S+L   + + ++L+ KE
Sbjct: 453 ----ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKE 508

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            HC+ +++ L        D ++ N L+D+Y KC+++  A  +F++I  K +DV +WT MI
Sbjct: 509 IHCHILRKGLL-------DTVIQNELVDVYGKCRNMGYATRVFESI--KGKDVVSWTSMI 559

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            S + NG  ++A+ LF +M +    +  ++  L C L A A L+AL  GR+IH Y+LR  
Sbjct: 560 SSSALNGNESEAVELFRRMVETG--LSADSVALLCILSAAASLSALNKGREIHCYLLRKG 617

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           +  L   +A  ++DMY+  GD+ +A+ VFD ++++ ++ +TS++  YGMHG G  A   F
Sbjct: 618 F-CLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 676

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           D+MR E ++PD ++FL LLYACSH+G++D+G  +   M  E+ +    EHY C+VD+LGR
Sbjct: 677 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 736

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           AN + EA E ++ M  EPT  +W ALL  CR H+  E+GE+AA RLLELE +  G+  L+
Sbjct: 737 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 796

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN++A  GRW DV ++R+ MK +G++K PGCSW++       F   D++HP+S++IYE L
Sbjct: 797 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 856

Query: 732 AGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           + + +++ + +GYV  T F LH+VD+ EK  +L  HSE++A+AYG+L T     +RITKN
Sbjct: 857 SEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKN 916

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCH+    +S +   +I++RD+NRFHHF+ G C+C   W
Sbjct: 917 LRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 171/578 (29%), Positives = 279/578 (48%), Gaps = 60/578 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           + F WN +I   V    P +A  L+  M   G      +FP +LKAC +L   R GS +H
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++   G+ S  F+ NAL++MYA+ D LS AR+LFD   + G  D V WN+I+++Y+ SG
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG--DAVLWNSILSSYSTSG 263

Query: 219 DAEGGLMLFAR--MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            +   L LF    MTG      +  ++V+AL+AC        GK+      A  +     
Sbjct: 264 KSLETLELFREMHMTGPAP---NSYTIVSALTACDGFSYAKLGKEI----HASVLKSSTH 316

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             ++   NA++  Y+R G    A  + ++M       +VVTW+++I GY Q     EAL+
Sbjct: 317 SSELYVCNALIAMYTRCGKMPQAERILRQMNNA----DVVTWNSLIKGYVQNLMYKEALE 372

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F  M   G + + V++ S+++    +  LL G E H Y IK           +L V N 
Sbjct: 373 FFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH------GWDSNLQVGNT 426

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LIDMY+KC         F  +   ++D+ +WT +I  Y+QN    +AL LF  + +  K 
Sbjct: 427 LIDMYSKCNLTCYMGRAF--LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK--KR 482

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           ++ +   L   L A + L ++   ++IH ++LR    +L   + N L+D+Y +  ++  A
Sbjct: 483 MEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG--LLDTVIQNELVDVYGKCRNMGYA 540

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF+++K ++VVSWTS+++   ++G   +A   F +M + GL+ D V  L +L A +  
Sbjct: 541 TRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASL 600

Query: 577 GMVDQGLK-YFDSMSKEFGIS-----ARAEHYACIVDLLGRANRLDE------------- 617
             +++G + +   + K F +      A  + YAC  DL       D              
Sbjct: 601 SALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMI 660

Query: 618 -----------AVELIEGMPME---PTPIIWVALLNGC 641
                      AVEL + M  E   P  I ++ALL  C
Sbjct: 661 NAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 210/443 (47%), Gaps = 33/443 (7%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSS--GFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           F +VL+ CG+  +   G  +H+ I  +   F+ + F+   L+ MY +C +L  A ++FDE
Sbjct: 83  FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDE 141

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN---ALSACAS 252
           M         +WNT++ AY  +G+    L L+  M    +V+G  + L +    L ACA 
Sbjct: 142 MPDR---TAFAWNTMIGAYVSNGEPASALALYWNM----RVEGVPLGLSSFPALLKACAK 194

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDV-VSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           L     G       E   +  ++         NA+V+ Y++      A  LF   ++   
Sbjct: 195 LRDIRSGS------ELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE--- 245

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K + V W+++++ Y+  G   E L++FR+M   G  PN  T+VS L+ C       LGKE
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE 305

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   +K       +H  +L V NALI MY +C  +  A  +   +   N DV TW  +I
Sbjct: 306 IHASVLK-----SSTHSSELYVCNALIAMYTRCGKMPQAERILRQM--NNADVVTWNSLI 358

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y QN    +AL  F  M       K +  +++  + A  RL+ L  G ++HAYV+++ 
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGH--KSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           ++  +  V N LIDMYS+          F  +  ++++SWT+++ GY  +    +A   F
Sbjct: 417 WDSNLQ-VGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 552 DQMRKEGLAPDGVTFLVLLYACS 574
             + K+ +  D +    +L A S
Sbjct: 476 RDVAKKRMEIDEMILGSILRASS 498



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 2/212 (0%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L  C +  A+  GRQ+H+ + +      + F+A  L+ MY + G +D A  VFD +  R 
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRT 146

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             +W +++  Y  +G    A   +  MR EG+     +F  LL AC+    +  G +   
Sbjct: 147 AFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSE-LH 205

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           S+  + G  +       +V +  + + L  A  L +G   +   ++W ++L+        
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK- 264

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            L  L   R + +      SYT++S + A  G
Sbjct: 265 SLETLELFREMHMTGPAPNSYTIVSALTACDG 296


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/719 (37%), Positives = 412/719 (57%), Gaps = 34/719 (4%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
           + LF QM   G  P+ YT   V+ A         G  VHA++   GF+  + V N+L+++
Sbjct: 179 WELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISL 238

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y+R   L  AR +FD+M    I D V+WN+++A Y ++G       +F +M     V+  
Sbjct: 239 YSRLGMLRDARDVFDKM---EIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL-AGVKPT 294

Query: 240 GVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            ++  + + +CASL   +  K  QC       K  +     D +   A++   S+    +
Sbjct: 295 HMTFASVIKSCASLRELALVKLMQC-------KALKSGFTTDQIVITALMVALSKCKEMD 347

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           DA +LF  M +     NVV+W+A+I+G  Q G   +A+++F QM+  G++PN  T  ++L
Sbjct: 348 DALSLFSLMEEGK---NVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC-KSVDVARVMFDA 416
           +    V   +   E H   IK       S      V  AL+D Y K   ++D  +V F+ 
Sbjct: 405 T----VHYPVFVSEMHAEVIKTNYERSSS------VGTALLDAYVKLGNTIDAVKV-FEI 453

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR-LA 475
           I  K  D+  W+ M+  Y+Q G   +A  LF Q+ ++   +KPN FT S  + ACA   A
Sbjct: 454 IEAK--DLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG--IKPNEFTFSSVINACASPTA 509

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           A   G+Q HAY ++ +    +  V++ L+ MY++ G+ID+A  VF   K+R++VSW S++
Sbjct: 510 AAEQGKQFHAYAIKMRLNNAL-CVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMI 568

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           +GY  HG   KA   FD+M+K  +  D VTF+ ++ AC+H+G+V++G KYF+SM  +  I
Sbjct: 569 SGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHI 628

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
           +   +HY+C++DL  RA  L++A+ +I  MP  P   +W  LL   R+H NVELGELAA 
Sbjct: 629 NPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAE 688

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           +L+ L+ E   +Y LLSN+YA AG W++   +R LM    VKK PG SW++ K  T +F 
Sbjct: 689 KLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFL 748

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
            GD THP S +IY  L+ L  R+K  GY P T    HD++DE+K  +L  HSE+LA+A+G
Sbjct: 749 AGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFG 808

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++ T P  PI+I KNLR+CGDCH+    +S++    I++RDSNRFHHFK+G C+C  YW
Sbjct: 809 LIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 154/597 (25%), Positives = 269/597 (45%), Gaps = 90/597 (15%)

Query: 83  PSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVL 142
           P  A +L  +I   P ++   N L+    R +    A  LF+ ++     PDE T   V 
Sbjct: 41  PHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVF 100

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
             C      + G  VH      G   +V V  +L+ MY + + ++  R++FDEM   G  
Sbjct: 101 NICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEM---GER 157

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           ++VSW +++A Y+ +G       LF +M  +  V  +  ++   ++A  + G    G Q 
Sbjct: 158 NVVSWTSLLAGYSWNGLYGYVWELFCQMQYE-GVLPNRYTVSTVIAALVNEGVVGIGLQV 216

Query: 263 --------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
                                     GM+ +A+ VF++M+++D V+WN+M+ GY R G  
Sbjct: 217 HAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQD 276

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
            + F +F KM                                   Q  G++P  +T  S+
Sbjct: 277 LEVFEIFNKM-----------------------------------QLAGVKPTHMTFASV 301

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           +  CAS+  L L K   C  +K   + D       +VI AL+   +KCK +D A  +F +
Sbjct: 302 IKSCASLRELALVKLMQCKALKSGFTTDQ------IVITALMVALSKCKEMDDALSLF-S 354

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +  + ++V +WT MI    QNGG + A+ LF QM ++   VKPN FT S  L     +  
Sbjct: 355 LMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG--VKPNHFTYSAILTVHYPV-- 410

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
             F  ++HA V++  YE     V   L+D Y + G+   A  VF+ ++ +++++W++++ 
Sbjct: 411 --FVSEMHAEVIKTNYER-SSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLA 467

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC-SHSGMVDQGLKYFDSMSKEFGI 595
           GY   G  ++A   F Q+ KEG+ P+  TF  ++ AC S +   +QG ++       + I
Sbjct: 468 GYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF-----HAYAI 522

Query: 596 SARAEHYACI----VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
             R  +  C+    V +  +   +D A E+ +    E   + W ++++G   H   +
Sbjct: 523 KMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAK 578


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 273/733 (37%), Positives = 421/733 (57%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN L+   V+     +A ++F +M+  G  P E+ F  V+ AC    +   G  VHA++ 
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D +VF  NAL+ MY +   +  A  +F++M      D+VSWN +++    +G    
Sbjct: 230 RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS---DVVSWNALISGCVLNGHDHR 286

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            + L  +M     V  +  +L + L AC+  G +  G+Q  G M +A          D +
Sbjct: 287 AIELLLQMKYSGLVP-NVFTLSSILKACSGAGAFDLGRQIHGFMIKANA-----DSDDYI 340

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               +V  Y++    +DA  +F  M   ++    +  +A+I+G +  G   EAL +F ++
Sbjct: 341 GV-GLVDMYAKNHFLDDARKVFDWMFHRDL----ILCNALISGCSHGGRHDEALSLFYEL 395

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  GL  N  TL ++L   AS+ A    ++ H   +K     D        V+N LID Y
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAH------VVNGLIDSY 449

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  +  A  +F+  +  + D+   T MI + SQ      A+ LF +M +  K ++P+ 
Sbjct: 450 WKCSCLSDANRVFEECS--SGDIIACTSMITALSQCDHGEGAIKLFMEMLR--KGLEPDP 505

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F LS  L ACA L+A   G+Q+HA++++ Q+ M   F  N L+  Y++ G I+ A + F 
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCGSIEDAELAFS 564

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +L +R VVSW++++ G   HG G +A   F +M  EG+ P+ +T   +L AC+H+G+VD+
Sbjct: 565 SLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDE 624

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
             +YF+SM + FGI    EHY+C++DLLGRA +LD+A+EL+  MP +    IW ALL   
Sbjct: 625 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H + ELG+LAA +L  LE EK G++ LL+N YA+AG W +VA++R LMK + +KK P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW++ K+   TF VGD++HP +++IY  L  L   +   G+VP     LHD+D  EK  
Sbjct: 745 MSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKEL 804

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSE+LA+A+ +L+T PG PIR+ KNLRIC DCH A  FIS I++ EII+RD NRFH
Sbjct: 805 LLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFH 864

Query: 822 HFKEGSCTCKGYW 834
           HF++G+C+C  YW
Sbjct: 865 HFRDGTCSCGDYW 877



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 183/593 (30%), Positives = 292/593 (49%), Gaps = 43/593 (7%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +HLI+ Y     P  A      I P P  V W ++L+       LP +A + F  M   G
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEI-PDPCHVSW-SSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              +E+  P VLK    +P +R G+ VHA+  ++GF S+VFV NAL+AMY     +  AR
Sbjct: 99  VCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 155

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSA 249
           ++F+E       + VSWN +++AY ++      + +F  M    ++    G S V  ++A
Sbjct: 156 RVFNEADSER--NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV--VNA 211

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           C    T SR  + G    A  V  RM   KDV + NA+V  Y ++G  + A  +F+KM  
Sbjct: 212 C----TGSRNIEAGRQVHAMVV--RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD 265

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                +VV+W+A+I+G    GH H A+++  QM++ GL PNV TL S+L  C+  GA  L
Sbjct: 266 S----DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDL 321

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G++ H + IK       +  DD + +  L+DMYAK   +D AR +FD +   +RD+    
Sbjct: 322 GRQIHGFMIKA-----NADSDDYIGV-GLVDMYAKNHFLDDARKVFDWMF--HRDLILCN 373

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I   S  G  ++AL+LF ++ ++   V  N  TL+  L + A L A    RQ+HA  +
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGV--NRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  + +    V N LID Y +   +  A  VF+     ++++ TS++T       G+ A 
Sbjct: 432 KIGF-IFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISARAEHYACIVD 607
             F +M ++GL PD      LL AC+     +QG +    + K +F   A A +   +V 
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVY 548

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
              +   +++A      +P E   + W A++ G   H +         R LEL
Sbjct: 549 TYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH-------GKRALEL 593


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 273/733 (37%), Positives = 421/733 (57%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN L+   V+     +A ++F +M+  G  P E+ F  V+ AC    +   G  VHA++ 
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D +VF  NAL+ MY +   +  A  +F++M      D+VSWN +++    +G    
Sbjct: 230 RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS---DVVSWNALISGCVLNGHDHR 286

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            + L  +M     V  +  +L + L AC+  G +  G+Q  G M +A          D +
Sbjct: 287 AIELLLQMKYSGLVP-NVFTLSSILKACSGAGAFDLGRQIHGFMIKANA-----DSDDYI 340

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               +V  Y++    +DA  +F  M   ++    +  +A+I+G +  G   EAL +F ++
Sbjct: 341 GV-GLVDMYAKNHFLDDARKVFDWMFHRDL----ILCNALISGCSHGGRHDEALSLFYEL 395

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  GL  N  TL ++L   AS+ A    ++ H   +K     D        V+N LID Y
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAH------VVNGLIDSY 449

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  +  A  +F+  +  + D+   T MI + SQ      A+ LF +M +  K ++P+ 
Sbjct: 450 WKCSCLSDANRVFEECS--SGDIIACTSMITALSQCDHGEGAIKLFMEMLR--KGLEPDP 505

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F LS  L ACA L+A   G+Q+HA++++ Q+ M   F  N L+  Y++ G I+ A + F 
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCGSIEDAELAFS 564

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +L +R VVSW++++ G   HG G +A   F +M  EG+ P+ +T   +L AC+H+G+VD+
Sbjct: 565 SLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDE 624

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
             +YF+SM + FGI    EHY+C++DLLGRA +LD+A+EL+  MP +    IW ALL   
Sbjct: 625 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H + ELG+LAA +L  LE EK G++ LL+N YA+AG W +VA++R LMK + +KK P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW++ K+   TF VGD++HP +++IY  L  L   +   G+VP     LHD+D  EK  
Sbjct: 745 MSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKEL 804

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSE+LA+A+ +L+T PG PIR+ KNLRIC DCH A  FIS I++ EII+RD NRFH
Sbjct: 805 LLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFH 864

Query: 822 HFKEGSCTCKGYW 834
           HF++G+C+C  YW
Sbjct: 865 HFRDGTCSCGDYW 877



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 183/593 (30%), Positives = 293/593 (49%), Gaps = 43/593 (7%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +HLI+ Y     P  A  +   I P P  V W ++L+       LP +A + F  M   G
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEI-PDPCHVSW-SSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              +E+  P VLK    +P +R G+ VHA+  ++GF S+VFV NAL+AMY     +  AR
Sbjct: 99  VCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 155

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSA 249
           ++F+E       + VSWN +++AY ++      + +F  M    ++    G S V  ++A
Sbjct: 156 RVFNEADSER--NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV--VNA 211

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           C    T SR  + G    A  V  RM   KDV + NA+V  Y ++G  + A  +F+KM  
Sbjct: 212 C----TGSRNIEAGRQVHAMVV--RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD 265

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                +VV+W+A+I+G    GH H A+++  QM++ GL PNV TL S+L  C+  GA  L
Sbjct: 266 S----DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDL 321

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G++ H + IK       +  DD + +  L+DMYAK   +D AR +FD +   +RD+    
Sbjct: 322 GRQIHGFMIKA-----NADSDDYIGV-GLVDMYAKNHFLDDARKVFDWMF--HRDLILCN 373

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I   S  G  ++AL+LF ++ ++   V  N  TL+  L + A L A    RQ+HA  +
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGV--NRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  + +    V N LID Y +   +  A  VF+     ++++ TS++T       G+ A 
Sbjct: 432 KIGF-IFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISARAEHYACIVD 607
             F +M ++GL PD      LL AC+     +QG +    + K +F   A A +   +V 
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVY 548

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
              +   +++A      +P E   + W A++ G   H +         R LEL
Sbjct: 549 TYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH-------GKRALEL 593


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  497 bits (1280), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 292/840 (34%), Positives = 455/840 (54%), Gaps = 49/840 (5%)

Query: 13  SKTPLTLNHLFTNIKLFSVT-------TTPCIKITSLLLRQCKSLTQVYL---IHQQIIV 62
           S+  L    L T I++ S T       T PC+      ++ C  ++ V +   +H  ++ 
Sbjct: 162 SRNELYDEVLETFIEMISTTDLLPDHFTYPCV------IKACAGMSDVGIGLAVHGLVVK 215

Query: 63  QNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120
             L       + L++ Y +H   + AL L   I P   ++  WN++IR        + +F
Sbjct: 216 TGLVEDVFVGNALVSFYGTHGFVTDALQLFD-IMPER-NLVSWNSMIRVFSDNGFSEESF 273

Query: 121 RLFLQMMRR----GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
            L  +MM       + PD  T   VL  C        G  VH        D  + + NAL
Sbjct: 274 LLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNAL 333

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVK 235
           M MY++C  ++ A+ +F         ++VSWNT+V  ++  GD  G   +  +M  G   
Sbjct: 334 MDMYSKCGCITNAQMIFKMNNNK---NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 390

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           V+ D V+++NA+  C         K+       K+ F    V + +  NA V  Y++ GS
Sbjct: 391 VKADEVTILNAVPVCFHESFLPSLKELHCYS-LKQEF----VYNELVANAFVASYAKCGS 445

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A  +F  +R + V     +W+A+I G+AQ      +LD   QM+  GL P+  T+ S
Sbjct: 446 LSYAQRVFHGIRSKTVN----SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 501

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LLS C+ + +L LGKE H + I+  L        DL V  +++ +Y  C  +   + +FD
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLE------RDLFVYLSVLSLYIHCGELCTVQALFD 555

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
           A+  +++ + +W  +I  Y QNG  + AL +F QM      ++    ++     AC+ L 
Sbjct: 556 AM--EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYG--IQLCGISMMPVFGACSLLP 611

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +LR GR+ HAY L++  E    F+A  LIDMY+++G I  +  VF+ LK+++  SW +++
Sbjct: 612 SLRLGREAHAYALKHLLED-DAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            GYG+HGL  +A   F++M++ G  PD +TFL +L AC+HSG++ +GL+Y D M   FG+
Sbjct: 671 MGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGL 730

Query: 596 SARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
               +HYAC++D+LGRA +LD+A+ ++ E M  E    IW +LL+ CRIH N+E+GE  A
Sbjct: 731 KPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVA 790

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            +L ELE EK  +Y LLSN+YA  G+W+DV ++R  M    ++K  GCSW++      +F
Sbjct: 791 AKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSF 850

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
            VG+R     ++I  + + L  +I  MGY P T    HD+ +EEK + L  HSEKLAL Y
Sbjct: 851 VVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTY 910

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G++ T+ GT IR+ KNLRIC DCH+A   IS ++  EI++RD+ RFHHFK G C+C  YW
Sbjct: 911 GLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/554 (28%), Positives = 284/554 (51%), Gaps = 33/554 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           ++F WNA+I    R  L D     F++M+      PD +T+P V+KAC  +     G +V
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 209

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H ++  +G   +VFV NAL++ Y     ++ A QLFD M +    ++VSWN+++  ++ +
Sbjct: 210 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER---NLVSWNSMIRVFSDN 266

Query: 218 GDAEGGLMLFARM---TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           G +E   +L   M    GD     D  +LV  L  CA      R ++ G+ +       +
Sbjct: 267 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA------REREIGLGKGVHGWAVK 320

Query: 275 MKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           +++ K++V  NA++  YS+ G   +A  +FK     N   NVV+W+ ++ G++  G  H 
Sbjct: 321 LRLDKELVLNNALMDMYSKCGCITNAQMIFKM----NNNKNVVSWNTMVGGFSAEGDTHG 376

Query: 334 ALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
             DV RQM   G  ++ + VT+++ +  C     L   KE HCY++K+    +       
Sbjct: 377 TFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE------ 430

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +V NA +  YAKC S+  A+ +F  I  +++ V +W  +IG ++Q+     +L    QM 
Sbjct: 431 LVANAFVASYAKCGSLSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK 488

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
               L  P++FT+   L AC++L +LR G+++H +++RN  E  + FV   ++ +Y   G
Sbjct: 489 ISGLL--PDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL-FVYLSVLSLYIHCG 545

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           ++ T + +FD ++ +++VSW +++TGY  +G  D+A   F QM   G+   G++ + +  
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACS    +  G +      K   +   A     ++D+  +   + ++ ++  G+  E + 
Sbjct: 606 ACSLLPSLRLGREAHAYALKHL-LEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 663

Query: 632 IIWVALLNGCRIHA 645
             W A++ G  IH 
Sbjct: 664 ASWNAMIMGYGIHG 677



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 211/443 (47%), Gaps = 32/443 (7%)

Query: 140 FVLKACGELPSSRCGSSVHAVIC-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
            +L+A G+      G  +H ++  S+   ++  +C  ++ MYA C +   +R +FD +  
Sbjct: 89  LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 148

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               ++  WN ++++Y+++   +  L  F  M     +  D  +    + ACA +     
Sbjct: 149 K---NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G     +     V +   V+DV   NA+V+ Y   G   DA  LF  M +     N+V+W
Sbjct: 206 GLAVHGL-----VVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER----NLVSW 256

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQF----CGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           +++I  ++  G   E+  +  +M          P+V TLV++L  CA    + LGK  H 
Sbjct: 257 NSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHG 316

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           + +K  L +D     +L++ NAL+DMY+KC  +  A+++F      N++V +W  M+G +
Sbjct: 317 WAVK--LRLD----KELVLNNALMDMYSKCGCITNAQMIFK--MNNNKNVVSWNTMVGGF 368

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           S  G  +    +  QM    + VK +  T+  A+  C   + L   +++H Y L+ ++ +
Sbjct: 369 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF-V 427

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD-- 552
               VAN  +  Y++ G +  A+ VF  ++ + V SW +L+ G   H   +    + D  
Sbjct: 428 YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG---HAQSNDPRLSLDAH 484

Query: 553 -QMRKEGLAPDGVTFLVLLYACS 574
            QM+  GL PD  T   LL ACS
Sbjct: 485 LQMKISGLLPDSFTVCSLLSACS 507



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 179/385 (46%), Gaps = 39/385 (10%)

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
           ++ + ++GD +          GD +   D   LV        L   + GK+  + E  +K
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVRE---ALGLLLQASGKRKDI-EMGRK 105

Query: 271 VFE------RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           + +      R++  DV+    ++T Y+  GS +D+  +F  +R +N+      W+AVI+ 
Sbjct: 106 IHQLVSGSTRLRNDDVLC-TRIITMYAMCGSPDDSRFVFDALRSKNL----FQWNAVISS 160

Query: 325 YAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           Y++     E L+ F +M     L P+  T   ++  CA +  + +G   H   +K  L  
Sbjct: 161 YSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL-- 218

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                +D+ V NAL+  Y     V  A  +FD I P+ R++ +W  MI  +S NG + ++
Sbjct: 219 ----VEDVFVGNALVSFYGTHGFVTDALQLFD-IMPE-RNLVSWNSMIRVFSDNGFSEES 272

Query: 444 LALFPQMFQQ--DKLVKPNAFTLSCALMACARLAALRFGRQIHAYV--LRNQYEMLIPFV 499
             L  +M ++  D    P+  TL   L  CAR   +  G+ +H +   LR   E+++   
Sbjct: 273 FLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLN-- 330

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK--- 556
            N L+DMYS+ G I  A+++F     +NVVSW +++ G+   G     H  FD +R+   
Sbjct: 331 -NALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQMLA 386

Query: 557 --EGLAPDGVTFLVLLYACSHSGMV 579
             E +  D VT L  +  C H   +
Sbjct: 387 GGEDVKADEVTILNAVPVCFHESFL 411



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 8/198 (4%)

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           +D ++   +I MYA C S D +R +FDA+  KN  +  W  +I SYS+N   ++ L  F 
Sbjct: 118 NDDVLCTRIITMYAMCGSPDDSRFVFDALRSKN--LFQWNAVISSYSRNELYDEVLETFI 175

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M     L+ P+ FT  C + ACA ++ +  G  +H  V++      + FV N L+  Y 
Sbjct: 176 EMISTTDLL-PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV-FVGNALVSFYG 233

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPDGV 564
             G +  A  +FD + +RN+VSW S++  +  +G  +++     +M +E       PD  
Sbjct: 234 THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVA 293

Query: 565 TFLVLLYACSHSGMVDQG 582
           T + +L  C+    +  G
Sbjct: 294 TLVTVLPVCAREREIGLG 311



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 32/237 (13%)

Query: 449 QMFQQDKLVKPNAF-----TLSCALMACARLAALRFGRQIHAYV-----LRNQYEMLIPF 498
           Q F  D     +AF      L   L A  +   +  GR+IH  V     LRN        
Sbjct: 67  QEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRND-----DV 121

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKE 557
           +   +I MY+  G  D +R VFD L+ +N+  W ++++ Y  + L D+    F +M    
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKY-FDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            L PD  T+  ++ AC  +GM D G+      +  + G+         +V   G    + 
Sbjct: 182 DLLPDHFTYPCVIKAC--AGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 239

Query: 617 EAVELIEGMPMEPTPIIWVALL-----NGCRIHANVELGELAANRLLELESEKDGSY 668
           +A++L + MP E   + W +++     NG    + + LGE+       +E   DG++
Sbjct: 240 DALQLFDIMP-ERNLVSWNSMIRVFSDNGFSEESFLLLGEM-------MEENGDGAF 288


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/729 (37%), Positives = 416/729 (57%), Gaps = 61/729 (8%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA---MYARCDTLSYARQLFDEMF 197
           +L  C  L S R    +HA +  +G  +  +  + L+    +    D L YA  +F+ + 
Sbjct: 8   LLHNCKTLQSLRI---IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQ 64

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P   +++ WNT+   +A S D    + L+  M   + +  +  +    L +CA L    
Sbjct: 65  EP---NLLIWNTMFRGHALSSDPVSAIKLYVCMIS-LGLLPNSYTFPFLLKSCAKLKVSK 120

Query: 258 RGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G  ++A KVF+    +DVVS+ A++TGY+
Sbjct: 121 EGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYA 180

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G  E A    +KM  E    +VV+W+A+I+GYA  G+  EALD+F++M    ++P+  
Sbjct: 181 SRGYIESA----QKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDES 236

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+V+++S CA  G++ LG++ H +     L        +L ++NALID+Y+KC  V+ A 
Sbjct: 237 TMVTVVSACAQSGSIQLGRQVHSWIDDHGLG------SNLKIVNALIDLYSKCGEVETAC 290

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  ++  N+DV +W  MIG Y+      +AL LF +M +  +   PN  T+   L AC
Sbjct: 291 GLFQGLS--NKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGE--NPNDVTMLSILPAC 346

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANC------LIDMYSRSGDIDTARVVFDNLKQ 525
           A+L A+ FGR IH Y+ +      I  V N       LIDMY++ GDI+ A  VF+++  
Sbjct: 347 AQLGAIDFGRWIHVYIDKR-----IKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHH 401

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R + +  +++ G+ MHG  + A   F +MRK G+ PD +TF+ LL ACSHSGM+D G + 
Sbjct: 402 RTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRI 461

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F SM++ + I+ + EHY C++DLLG      EA E+I  M MEP  +IW +LL  C++H 
Sbjct: 462 FRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHG 521

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           NVELGE  A +L+++E E  GSY LLSNIYA AGRW +VA IR+L+   G+KK PGCS +
Sbjct: 522 NVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSI 581

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +       F +GD+ HP++++IY +L  +   ++  G+VP TS  L ++++E K   L  
Sbjct: 582 EIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRH 641

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+G+++T PGT + I KNLR+C +CH A   IS I   EII RD  RFHHF++
Sbjct: 642 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 701

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 702 GVCSCNDYW 710



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 159/574 (27%), Positives = 280/574 (48%), Gaps = 69/574 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYV---SHNAPSPALSLLQRISPSP 97
           LL  CK+L  + +IH Q+I   L  T+   S L+   +   + +    A+S+ + I    
Sbjct: 8   LLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEP- 66

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  WN + R       P +A +L++ M+  G  P+ YTFPF+LK+C +L  S+ G  +
Sbjct: 67  -NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQI 125

Query: 158 HAVICSSGFDSNVFVCNALMAMYARC----------------DTLSY------------- 188
           H  +   G++ +++V  +L++MY +                 D +SY             
Sbjct: 126 HGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYI 185

Query: 189 --ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
             A+++FDE+    + D+VSWN I++ YA +G+ +  L LF  M     V+ D  ++V  
Sbjct: 186 ESAQKMFDEI---PVKDVVSWNAIISGYADTGNNKEALDLFKEMM-KTNVKPDESTMVTV 241

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           +SACA  G+   G+Q     +   +   +K+      NA++  YS+ G  E A  LF+ +
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIV-----NALIDLYSKCGEVETACGLFQGL 296

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             +    +V++W+ +I GY       EAL +F++M   G  PN VT++S+L  CA +GA+
Sbjct: 297 SNK----DVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G+  H Y  KR+  V  +      +  +LIDMYAKC  ++ A  +F+++   +R ++ 
Sbjct: 353 DFGRWIHVYIDKRIKGVTNASS----LRTSLIDMYAKCGDIEAAHQVFNSM--HHRTLSA 406

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
              MI  ++ +G AN A  +F +M +    ++P+  T    L AC+    L  GR+I   
Sbjct: 407 CNAMIFGFAMHGRANAAFDIFSRMRKNG--IEPDDITFVGLLSACSHSGMLDLGRRIFRS 464

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG- 542
           + +N    + P + +  C+ID+    G    A  + + +  + + V W SL+    MHG 
Sbjct: 465 MTQNY--KITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGN 522

Query: 543 --LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
             LG+   +A   ++ E   P     L  +YA +
Sbjct: 523 VELGES--FAQKLIKIEPENPGSYVLLSNIYATA 554


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 293/835 (35%), Positives = 452/835 (54%), Gaps = 65/835 (7%)

Query: 38  KITSLLLRQCKSLTQVYLIHQQIIVQNLTH-VPPSHLIAAYVSHNAPSPALSLLQRI--- 93
           K T   L+ CK++ ++ + H  +  Q L   V     + A         +LS  + +   
Sbjct: 32  KATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFEN 91

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
             S  + F +N+LIR      L   A  LF++MM  G  PD+YTFPF L  C +      
Sbjct: 92  GESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGN 151

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H +I    +  ++FV N+L+  YA C  L  AR++FDEM +    ++VSW +++  
Sbjct: 152 GIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSER---NVVSWTSMICG 208

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           YA+   A+  + LF RM  D  V  + V++V  +SACA L           +E  +KV++
Sbjct: 209 YARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLED---------LETGEKVYD 259

Query: 274 RMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
            ++     V D++  +A+V  Y +  + + A  LF +    N+ L     +A+ + Y ++
Sbjct: 260 FIRDSGIEVNDLM-ISALVDMYMKCNAIDIAKRLFDEYGASNLDL----CNAMASNYVRQ 314

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   EAL V   M   G+ P+ ++++S +S C+ +  +L GK  H Y ++     +G   
Sbjct: 315 GLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLR-----NGFES 369

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            D  + NALIDMY KC   D A  +FD ++  N+ V TW  ++  Y +NG  + A   F 
Sbjct: 370 WD-NICNALIDMYMKCHRQDTAFRIFDRMS--NKTVVTWNSIVAGYIENGEVDAAWETFN 426

Query: 449 QM------------------------------FQQDKLVKPNAFTLSCALMACARLAALR 478
            M                               Q  + V  +  T+     AC  L AL 
Sbjct: 427 TMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALD 486

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
             + I+ Y+ +N+ ++ +  +   L+DM+SR GD ++A  +F++L  R+V +WT+ +   
Sbjct: 487 LAKWIYYYIEKNRIQLDVR-LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 545

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
            M G  ++A   F++M ++GL PDGV F+  L AC H G+V QG + F+SM K  G+S  
Sbjct: 546 AMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPE 605

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
             HY C+VDLLGRA  L+EA++LI+ MP EP  +IW +LL  CR+  NVE+   AA ++ 
Sbjct: 606 DVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQ 665

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
            L  E+ GSY LLSN+YA+AGRW D+A++R  MK  G++K PG S +Q +  T  F  GD
Sbjct: 666 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGD 725

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
            +HP+ +KI  +L  L QR   +G+VP  S  L DVD++EK  +L  HSEKLA+A+G+++
Sbjct: 726 ESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLIS 785

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +  GT IRI KNLR+C  CHS   F S + N EIILRD+NRFH  ++G C+C  +
Sbjct: 786 SNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 280/742 (37%), Positives = 421/742 (56%), Gaps = 38/742 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+   ++     +   LF +M   G  P+  TF  VL           G  VH
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A     G  S VFVCN+LM MYA+C  +  AR +F  M      D+VSWNT++A    +G
Sbjct: 229 AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR---DMVSWNTLMAGLVLNG 285

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF      + +     +    +  CA++      KQ G+   A+++   +  +
Sbjct: 286 HDLEALQLFHDSRSSITMLTQS-TYATVIKLCANI------KQLGL---ARQLHSSVLKR 335

Query: 279 DVVSW----NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
              S+     A++  YS+ G   +A  +F  M       NVV+W+A+I G  Q G    A
Sbjct: 336 GFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQ---NVVSWTAMINGCIQNGDVPLA 392

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             +F +M+  G+ PN  T  ++L+  ASV +L    + H   IK       ++    +V 
Sbjct: 393 AALFSRMREDGVAPNDFTYSTILT--ASVASL--PPQIHAQVIKT------NYECTSIVG 442

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            AL+  Y+K  + + A  +F  I  K  DV +W+ M+  Y+Q G ++ A  +F +M    
Sbjct: 443 TALLASYSKLCNTEEALSIFKMIDQK--DVVSWSAMLTCYAQAGDSDGATNIFIKMTMHG 500

Query: 455 KLVKPNAFTLSCALMACAR-LAALRFGRQIHAYVLRNQ-YEMLIPFVANCLIDMYSRSGD 512
             +KPN FT+S  + ACA   A +  GRQ HA  ++++ ++ L   V++ L+ MY+R G 
Sbjct: 501 --LKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALC--VSSALVSMYARKGS 556

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           I++A+ +F+    R++VSW S+++GY  HG   KA   F QM  EG+  DGVTFL ++  
Sbjct: 557 IESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMG 616

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+H+G+V++G +YFDSM++++GI+   EHYAC+VDL  RA +LDEA+ LIEGM     P+
Sbjct: 617 CAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPM 676

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W  LL  C++H NVELG+LAA +LL LE     +Y LLSNIY+ AG+WK+   +R LM 
Sbjct: 677 VWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMD 736

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
              VKK  GCSW+Q K    +F   D++HP S++IY  L  +  ++K  GY P TSFALH
Sbjct: 737 TKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALH 796

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           +V +E+K  +L  HSE+LALA+G++ T PG P+ I KNLR+CGDCH+ I  +S I + EI
Sbjct: 797 EVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREI 856

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           ++RD +RFHHF  G C+C  +W
Sbjct: 857 VMRDCSRFHHFNSGVCSCGDFW 878



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 192/412 (46%), Gaps = 39/412 (9%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +   C+  +      +  + ARQ FDE+      D   ++     +A+ G     L  F 
Sbjct: 37  STLACSVPLENQTNLNDATGARQAFDEIPHRNTLDHALFD-----HARRGSVHQALDHFL 91

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVV 281
            +      +  G +LV  L  C S+     GKQ       CG         +R    DV 
Sbjct: 92  DVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCG--------HDR---GDVG 140

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
              ++V  Y +  S  D   +F+ M     K NVVTW++++ GY Q G   + +++F +M
Sbjct: 141 VGTSLVDMYMKWHSVVDGRKVFEAMP----KRNVVTWTSLLTGYIQDGALSDVMELFFRM 196

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  G+ PN VT  S+LS  AS G + LG+  H  ++K            + V N+L++MY
Sbjct: 197 RAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCC------STVFVCNSLMNMY 250

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC  V+ ARV+F  +  + RD+ +W  ++     NG   +AL LF     +  +     
Sbjct: 251 AKCGLVEEARVVFCGM--ETRDMVSWNTLMAGLVLNGHDLEALQLFHD--SRSSITMLTQ 306

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T +  +  CA +  L   RQ+H+ VL+  +      V   L+D YS++G +  A  +F 
Sbjct: 307 STYATVIKLCANIKQLGLARQLHSSVLKRGFHSY-GNVMTALMDAYSKAGQLGNALDIFL 365

Query: 522 NLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
            +   +NVVSWT+++ G   +G    A   F +MR++G+AP+  T+  +L A
Sbjct: 366 LMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 7/231 (3%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR  FD I  +N    T    +  +++ G  + AL  F  + +     +     L   L 
Sbjct: 57  ARQAFDEIPHRN----TLDHALFDHARRGSVHQALDHFLDVHRCHG-GRVGGGALVGVLK 111

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            C  +     G+Q+H   +R  ++     V   L+DMY +   +   R VF+ + +RNVV
Sbjct: 112 VCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVV 171

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +WTSL+TGY   G        F +MR EG+ P+ VTF  +L   +  GMVD G +   + 
Sbjct: 172 TWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG-RRVHAQ 230

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           S +FG  +       ++++  +   ++EA  +  GM      + W  L+ G
Sbjct: 231 SVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDM-VSWNTLMAG 280


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/815 (35%), Positives = 452/815 (55%), Gaps = 45/815 (5%)

Query: 33  TTPCIKITSLLLRQCKSLTQVYL---IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPAL 87
           T PC+      ++ C  +++V +   +H  ++   L       + L++ Y ++ + S AL
Sbjct: 186 TFPCV------VKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDAL 239

Query: 88  SLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR----GWHPDEYTFPFVLK 143
            +  +I P   ++  WN++IR      L +  F L  QMM +     + PD  T   VL 
Sbjct: 240 RVF-KIMPER-NLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLP 297

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
            C        G  VH +      D  V V NALM MY++C  ++ A+ +F         +
Sbjct: 298 VCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNK---N 354

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQ- 261
           +VSWNT+V  ++ +GD      L  +M  G   ++ D V+++NA+  C         K+ 
Sbjct: 355 VVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKEL 414

Query: 262 -CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
            C  +++     E +   ++V+ NA V  Y++ GS   A  +F  +R + V     +W+A
Sbjct: 415 HCYSLKQ-----EFVHNNELVA-NAFVASYAKCGSLSYAHRVFCSIRSKTVN----SWNA 464

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I GY+Q      +LD + QM+  GL P++ T+ SLLS C+ + +L LGKE H   I+  
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR 524

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L  D        V  +L+ +Y  C  +  A V+FDA+  +++ + +W  M+  Y QNG  
Sbjct: 525 LERDS------FVYISLLSLYIHCGELSTAHVLFDAM--EDKTLVSWNTMVNGYLQNGFP 576

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             AL+LF QM      V+P   ++     AC+ L +LR GR+ H Y L+   E    F+A
Sbjct: 577 ERALSLFRQMVLYG--VQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLED-NAFIA 633

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             +IDMY+++G +  +  VF+ LK+R+V SW +++ GYG+HG   +A   F++M++ G  
Sbjct: 634 CSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHC 693

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD +TFL +L AC+HSG+V +GL Y D M   FG++   +HYAC++D+L RA +LDEA++
Sbjct: 694 PDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALK 753

Query: 621 L-IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           +  E M  EP   IW  LL+ CRIH N+E+GE  A +L   E EK  +Y LLSN+YA +G
Sbjct: 754 IATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSG 813

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           +W +V ++R  MK   ++K  GCSW++      +F  G+ +    ++I  + + L + I 
Sbjct: 814 KWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIG 873

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
            MGY P TS   HD+ +EEK + L  HSEKLA+ YG++ T+ GT +R+ KNLRIC DCH+
Sbjct: 874 KMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHN 933

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A   IS ++  EI++RD+ RFHHFK G C+C  YW
Sbjct: 934 AAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 236/507 (46%), Gaps = 35/507 (6%)

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFV-CNALMAMYARCDTLSYARQLFDEMFQPGI 201
           +A G     + G  +H ++  S   SN  V C  ++ MY+ C +   +R +FD + +   
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKK-- 146

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            ++  WN ++++Y+++      L +F +M  +  +  D  +    + ACA +       Q
Sbjct: 147 -NLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEV----Q 201

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
            G+      V  R+ V+DV   NA+V+ Y   GS  DA  +FK M +     N+V+W+++
Sbjct: 202 VGLAVHGLVVKTRL-VEDVFVSNALVSFYGTNGSVSDALRVFKIMPER----NLVSWNSM 256

Query: 322 IAGYAQRGHGHEALDVFRQM----QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           I  ++  G   E   +  QM          P+V TL ++L  CA    + +GK  H   +
Sbjct: 257 IRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAM 316

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K  LS+D     +++V NAL+DMY+KC  ++ A+V+F      N++V +W  M+G +S  
Sbjct: 317 K--LSLD----KEVVVNNALMDMYSKCGCINDAQVIFK--LNNNKNVVSWNTMVGGFSAA 368

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G  +    L  QM      ++ +  T+  A+  C   + L   +++H Y L+ ++     
Sbjct: 369 GDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNE 428

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            VAN  +  Y++ G +  A  VF +++ + V SW +L+ GY        +  A+ QM+  
Sbjct: 429 LVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSS 488

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH----YACIVDLLGRAN 613
           GL PD  T   LL ACS    +  G +    +     I  R E     Y  ++ L     
Sbjct: 489 GLLPDLFTVCSLLSACSQIKSLKLGKEVHGLI-----IRNRLERDSFVYISLLSLYIHCG 543

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNG 640
            L  A  L + M  + T + W  ++NG
Sbjct: 544 ELSTAHVLFDAME-DKTLVSWNTMVNG 569


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 285/774 (36%), Positives = 410/774 (52%), Gaps = 105/774 (13%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP----------GIC--- 202
           +VHA + +SGF       N L+ MY +   + YARQLF+E+  P            C   
Sbjct: 34  AVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALG 93

Query: 203 -----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
                            D V +N ++  YA +GD    L LF  M  D   + D  +  +
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD-DFRPDDFTFTS 152

Query: 246 ALSA---------------CASLGTW---------------------SRGKQCGMMEEAK 269
            LSA               CA + T                        G  C  M  A+
Sbjct: 153 VLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSAR 212

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           K+F+ M  +D ++W  M+TGY R      A  +F+ M  EN+      W+A+I+GY   G
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM-VENLG---AAWNAMISGYVHCG 268

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
              EAL + R+M+F G++ + +T  +++S CA+VG+  +GK+ H Y +K  L  + +H  
Sbjct: 269 CFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNEL--NPNHSF 326

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------------------------- 421
            L V NALI +Y K   VD AR +F A+  +N                            
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMP 386

Query: 422 -RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            +++ T TVMI   +QNG  ++ L LF QM + D   +P  F  + AL AC+ L AL  G
Sbjct: 387 VKNLLTLTVMISGLAQNGFGDEGLKLFKQM-RLDGF-EPCDFAFAGALTACSVLGALENG 444

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           RQ+HA ++   YE  +  V N +I MY++ G ++ A  VF  +   ++VSW S++   G 
Sbjct: 445 RQLHAQLVHLGYESSLS-VGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQ 503

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG G KA   FDQM KEG+ PD +TFL +L ACSH+G+V++G  YF+SM + +GI+   +
Sbjct: 504 HGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCED 563

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HYA +VDL  RA     A  +I+ MP +P   +W ALL GCRIH N++LG  AA +L +L
Sbjct: 564 HYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKL 623

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
             + DG+Y LLSNIYA+ GRW DVA++R LM+   V+K P CSW++ +     F V D  
Sbjct: 624 MPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDV 683

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP+   +Y  L  L   +K +GY+P T F LHD++ E+K   L  HSEKLA+ +GI+   
Sbjct: 684 HPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLP 743

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           P   +R+ KN+RICGDCH+A  F+S +   EII+RD  RFHHFK G C+C+ YW
Sbjct: 744 PDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 153/602 (25%), Positives = 259/602 (43%), Gaps = 90/602 (14%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           +  LL   CKS   VY       + N   +  + LI AY +         +         
Sbjct: 51  LNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMR 110

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL--PSSRCGSS 156
              ++NA+I          +A  LF  M R  + PD++TF  VL A         +CG  
Sbjct: 111 DSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-Q 169

Query: 157 VHAVICSSGFDS-NVFVCNALMAMYAR--------CDTLSYARQLFDEMFQPGICDIVSW 207
           +H  +  +G    +  V NAL+++Y +        C  +  AR+LFDEM +    D ++W
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKR---DELTW 226

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGD------------------------------VKVQ 237
            T++  Y ++ D  G   +F  M  +                              + +Q
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 238 GDGVSLVNALSACASLGTWSRGKQC------------------------------GMMEE 267
            D ++    +SACA++G++  GKQ                                 ++E
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A+K+F  M V+++++WNA+++GY   G  E+A + F++M  +    N++T + +I+G AQ
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVK----NLLTLTVMISGLAQ 402

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G G E L +F+QM+  G EP        L+ C+ +GAL  G++ H   +         +
Sbjct: 403 NGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL------GY 456

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
              L V NA+I MYAKC  V+ A  +F  +   + D+ +W  MI +  Q+G    A+ LF
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
            QM ++   V P+  T    L AC+    +  GR     +L +            ++D++
Sbjct: 515 DQMLKEG--VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLF 572

Query: 508 SRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
            R+G    AR+V D++  +     W +L+ G  +HG  D    A +Q+ K     DG   
Sbjct: 573 CRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYV 632

Query: 567 LV 568
           L+
Sbjct: 633 LL 634



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 24/254 (9%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           D   +LF QM   G+ P ++ F   L AC  L +   G  +HA +   G++S++ V NA+
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           ++MYA+C  +  A  +F  M  P + D+VSWN+++AA  Q G     + LF +M  +  V
Sbjct: 467 ISMYAKCGVVEAAESVFVTM--PSV-DLVSWNSMIAALGQHGHGVKAIELFDQMLKE-GV 522

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYS 291
             D ++ +  L+AC+           G++E+ +  F  M     ++     +  MV  + 
Sbjct: 523 FPDRITFLTVLTACS---------HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFC 573

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP-NV 350
           R G F  A  +   M     K     W A++AG   R HG+  L +    Q   L P N 
Sbjct: 574 RAGMFSYARIVIDSMPS---KPGAPVWEALLAGC--RIHGNMDLGIEAAEQLFKLMPQND 628

Query: 351 VTLVSLLSGCASVG 364
            T V L +  A VG
Sbjct: 629 GTYVLLSNIYADVG 642


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/733 (37%), Positives = 418/733 (57%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN L+   V+     +A ++F +M+  G  P E+ F  V+ AC    +   G  VHA++ 
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 229

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G++ +VF  NAL+ MY +   +  A  +F++M      D+VSWN +++    +G    
Sbjct: 230 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS---DVVSWNALISGCVLNGHDHR 286

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            + L  +M     V  +   L + L ACA  G +  G+Q  G M +A          D +
Sbjct: 287 AIELLLQMKSSGLVP-NVFMLSSILKACAGAGAFDLGRQIHGFMIKANA-----DSDDYI 340

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               +V  Y++    +DA  +F  M   ++    + W+A+I+G +  G   EA  +F  +
Sbjct: 341 GV-GLVDMYAKNHFLDDAMKVFDWMSHRDL----ILWNALISGCSHGGRHDEAFSIFYGL 395

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  GL  N  TL ++L   AS+ A    ++ H    K     D        V+N LID Y
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAH------VVNGLIDSY 449

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  +  A  +F+  +  + D+   T MI + SQ      A+ LF +M +  K ++P+ 
Sbjct: 450 WKCSCLSDAIRVFEECS--SGDIIAVTSMITALSQCDHGEGAIKLFMEMLR--KGLEPDP 505

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F LS  L ACA L+A   G+Q+HA++++ Q+ M   F  N L+  Y++ G I+ A + F 
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCGSIEDAELAFS 564

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +L +R VVSW++++ G   HG G +A   F +M  EG+ P+ +T   +L AC+H+G+VD+
Sbjct: 565 SLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDE 624

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
             +YF+SM + FGI    EHY+C++DLLGRA +LD+A+EL+  MP +    +W ALL   
Sbjct: 625 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS 684

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H + ELG+LAA +L  LE EK G++ LL+N YA++G W +VA++R LMK + +KK P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K+   TF VGD++HP +++IY  L  L   +   GY+P     LHD+D  EK  
Sbjct: 745 MSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKEL 804

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSE+LA+A+ +L+T PG PIR+ KNLRIC DCH A  FIS I++ EII+RD NRFH
Sbjct: 805 LLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFH 864

Query: 822 HFKEGSCTCKGYW 834
           HF++G+C+C  YW
Sbjct: 865 HFRDGTCSCGDYW 877



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 178/607 (29%), Positives = 289/607 (47%), Gaps = 41/607 (6%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           +H  ++         +HLI+ Y     P  A  +   I P P  V W ++L+       L
Sbjct: 26  LHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEI-PDPCHVSW-SSLVTAYSNNGL 83

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P +A + F  M   G   +E+  P VLK    +P ++ G+ VHA+  ++GF S+VFV NA
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANA 140

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDV 234
           L+AMY     +  AR++FDE       + VSWN +++AY ++      + +F  M    +
Sbjct: 141 LVAMYGGFGFMDDARRVFDEAGSER--NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           +    G S V  ++AC        G+Q   M     V      KDV + NA+V  Y ++G
Sbjct: 199 QPTEFGFSCV--VNACTGSRNIDAGRQVHAM-----VVRMGYEKDVFTANALVDMYVKMG 251

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             + A  +F+KM       +VV+W+A+I+G    GH H A+++  QM+  GL PNV  L 
Sbjct: 252 RVDIASVIFEKMPDS----DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLS 307

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L  CA  GA  LG++ H + IK       +  DD + +  L+DMYAK   +D A  +F
Sbjct: 308 SILKACAGAGAFDLGRQIHGFMIKA-----NADSDDYIGV-GLVDMYAKNHFLDDAMKVF 361

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D ++  +RD+  W  +I   S  G  ++A ++F  + ++   V  N  TL+  L + A L
Sbjct: 362 DWMS--HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGV--NRTTLAAVLKSTASL 417

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            A    RQ+HA   +  + +    V N LID Y +   +  A  VF+     ++++ TS+
Sbjct: 418 EAASATRQVHALAEKIGF-IFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 476

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EF 593
           +T       G+ A   F +M ++GL PD      LL AC+     +QG +    + K +F
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
              A A +   +V    +   +++A      +P E   + W A++ G   H +       
Sbjct: 537 MSDAFAGN--ALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH------- 586

Query: 654 ANRLLEL 660
             R LEL
Sbjct: 587 GKRALEL 593


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/733 (37%), Positives = 423/733 (57%), Gaps = 29/733 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN L+    +  L D A  L+ +M+  G  PD YTFP VL+ CG +P+   G  +H
Sbjct: 171 NLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIH 230

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   GF+S+V V NAL+ MY +C  ++ AR +FD+M      D +SWN +++ Y ++G
Sbjct: 231 VHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNR---DRISWNAMISGYFENG 287

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
               GL LF  M     V  D +++ + ++AC  LG    G+Q         V      +
Sbjct: 288 VCLEGLRLFGMMI-KYPVDPDLMTMTSVITACELLGDDRLGRQI-----HGYVLRTEFGR 341

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D    N+++  YS +G  E+A  +F +    ++    V+W+A+I+GY       +AL+ +
Sbjct: 342 DPSIHNSLIPMYSSVGLIEEAETVFSRTECRDL----VSWTAMISGYENCLMPQKALETY 397

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           + M+  G+ P+ +T+  +LS C+ +  L +G   H    ++ L V  S     +V N+LI
Sbjct: 398 KMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGL-VSYS-----IVANSLI 451

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKCK +D A  +F +   KN  + +WT +I     N    +AL  F +M ++   +K
Sbjct: 452 DMYAKCKCIDKALEIFHSTLEKN--IVSWTSIILGLRINNRCFEALFFFREMIRR---LK 506

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN+ TL C L ACAR+ AL  G++IHA+ LR        F+ N ++DMY R G ++ A  
Sbjct: 507 PNSVTLVCVLSACARIGALTCGKEIHAHALRTGVS-FDGFMPNAILDMYVRCGRMEYAWK 565

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F ++    V SW  L+TGY   G G  A   F +M +  ++P+ VTF+ +L ACS SGM
Sbjct: 566 QFFSVDHE-VTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGM 624

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +GL+YF+SM  ++ I    +HYAC+VDLLGR+ +L+EA E I+ MPM+P P +W ALL
Sbjct: 625 VAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALL 684

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           N CRIH +VELGELAA  + + ++   G Y LLSN+YA+ G+W  VA +R +M+  G+  
Sbjct: 685 NSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIV 744

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV-PQTSFALHDVDDE 757
            PGCSWV+ K     F   D  HPQ ++I  +L    +++K  G   P++S    D+ + 
Sbjct: 745 DPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHM--DIMEA 802

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            K D+   HSE+LA+ +G++ + PG PI +TKNL +C  CH+ + FIS  +  EI +RD+
Sbjct: 803 SKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDA 862

Query: 818 NRFHHFKEGSCTC 830
            +FHHFK G C+C
Sbjct: 863 EQFHHFKGGICSC 875



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 214/404 (52%), Gaps = 26/404 (6%)

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAF 300
           +A  A   L  W R ++     E  +V+  + +      +   NA+++ + R G+  DA+
Sbjct: 107 DAYVALIRLCEWKRARK-----EGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAW 161

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            +F +M     K N+ +W+ ++ GYA+ G   EALD++ +M + G++P+V T   +L  C
Sbjct: 162 YVFGRME----KRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTC 217

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
             +  L+ G+E H + I+           D+ V+NALI MY KC  V+ AR++FD +   
Sbjct: 218 GGMPNLVRGREIHVHVIRY------GFESDVDVVNALITMYVKCGDVNTARLVFDKMP-- 269

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           NRD  +W  MI  Y +NG   + L LF  M +    V P+  T++  + AC  L   R G
Sbjct: 270 NRDRISWNAMISGYFENGVCLEGLRLFGMMIKYP--VDPDLMTMTSVITACELLGDDRLG 327

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           RQIH YVLR ++    P + N LI MYS  G I+ A  VF   + R++VSWT++++GY  
Sbjct: 328 RQIHGYVLRTEFGR-DPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYEN 386

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
             +  KA   +  M  EG+ PD +T  ++L ACS    +D G+     ++K+ G+ + + 
Sbjct: 387 CLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMN-LHEVAKQKGLVSYSI 445

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
               ++D+  +   +D+A+E+     +E   + W +++ G RI+
Sbjct: 446 VANSLIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSIILGLRIN 488


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/733 (37%), Positives = 418/733 (57%), Gaps = 26/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN L+   V+     +A ++F +M+  G  P E+ F  V+ AC    +   G  VHA++ 
Sbjct: 77  WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 136

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G++ +VF  NAL+ MY +   +  A  +F++M      D+VSWN +++    +G    
Sbjct: 137 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS---DVVSWNALISGCVLNGHDHR 193

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            + L  +M     V  +   L + L ACA  G +  G+Q  G M +A          D +
Sbjct: 194 AIELLLQMKSSGLVP-NVFMLSSILKACAGAGAFDLGRQIHGFMIKANA-----DSDDYI 247

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
               +V  Y++    +DA  +F  M   ++    + W+A+I+G +  G   EA  +F  +
Sbjct: 248 GV-GLVDMYAKNHFLDDAMKVFDWMSHRDL----ILWNALISGCSHGGRHDEAFSIFYGL 302

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  GL  N  TL ++L   AS+ A    ++ H    K     D        V+N LID Y
Sbjct: 303 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAH------VVNGLIDSY 356

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  +  A  +F+  +  + D+   T MI + SQ      A+ LF +M +  K ++P+ 
Sbjct: 357 WKCSCLSDAIRVFEECS--SGDIIAVTSMITALSQCDHGEGAIKLFMEMLR--KGLEPDP 412

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F LS  L ACA L+A   G+Q+HA++++ Q+ M   F  N L+  Y++ G I+ A + F 
Sbjct: 413 FVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCGSIEDAELAFS 471

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +L +R VVSW++++ G   HG G +A   F +M  EG+ P+ +T   +L AC+H+G+VD+
Sbjct: 472 SLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDE 531

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
             +YF+SM + FGI    EHY+C++DLLGRA +LD+A+EL+  MP +    +W ALL   
Sbjct: 532 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS 591

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H + ELG+LAA +L  LE EK G++ LL+N YA++G W +VA++R LMK + +KK P 
Sbjct: 592 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 651

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K+   TF VGD++HP +++IY  L  L   +   GY+P     LHD+D  EK  
Sbjct: 652 MSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKEL 711

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSE+LA+A+ +L+T PG PIR+ KNLRIC DCH A  FIS I++ EII+RD NRFH
Sbjct: 712 LLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFH 771

Query: 822 HFKEGSCTCKGYW 834
           HF++G+C+C  YW
Sbjct: 772 HFRDGTCSCGDYW 784



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 159/529 (30%), Positives = 259/529 (48%), Gaps = 39/529 (7%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +E+  P VLK    +P ++ G+ VHA+  ++GF S+VFV NAL+AMY     +  AR++F
Sbjct: 9   NEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACAS 252
           DE       + VSWN +++AY ++      + +F  M    ++    G S V  ++AC  
Sbjct: 66  DEAGSER--NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV--VNACTG 121

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                 G+Q   M     V      KDV + NA+V  Y ++G  + A  +F+KM      
Sbjct: 122 SRNIDAGRQVHAM-----VVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS--- 173

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            +VV+W+A+I+G    GH H A+++  QM+  GL PNV  L S+L  CA  GA  LG++ 
Sbjct: 174 -DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 232

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H + IK       +  DD + +  L+DMYAK   +D A  +FD ++  +RD+  W  +I 
Sbjct: 233 HGFMIKA-----NADSDDYIGV-GLVDMYAKNHFLDDAMKVFDWMS--HRDLILWNALIS 284

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             S  G  ++A ++F  + ++   V  N  TL+  L + A L A    RQ+HA   +  +
Sbjct: 285 GCSHGGRHDEAFSIFYGLRKEGLGV--NRTTLAAVLKSTASLEAASATRQVHALAEKIGF 342

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
            +    V N LID Y +   +  A  VF+     ++++ TS++T       G+ A   F 
Sbjct: 343 -IFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFM 401

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISARAEHYACIVDLLGR 611
           +M ++GL PD      LL AC+     +QG +    + K +F   A A +   +V    +
Sbjct: 402 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAK 459

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
              +++A      +P E   + W A++ G   H +         R LEL
Sbjct: 460 CGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH-------GKRALEL 500


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/769 (36%), Positives = 411/769 (53%), Gaps = 56/769 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W+++I        P  AF  F +M      P+  TF  +LKAC           +H 
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           V+ +SG +++V V  AL+ MY++C  +S A ++F +M +    ++VSW  I+ A AQ   
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKER---NVVSWTAIIQANAQHRK 260

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                 L+ +M     +  + V+ V+ L++C +    +RG++         + ER    D
Sbjct: 261 LNEAFELYEKML-QAGISPNAVTFVSLLNSCNTPEALNRGRRI-----HSHISERGLETD 314

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALD-- 336
           VV  NA++T Y +    +DA   F +M     K +V++WSA+IAGYAQ G+   E+LD  
Sbjct: 315 VVVANALITMYCKCNCIQDARETFDRMS----KRDVISWSAMIAGYAQSGYQDKESLDEV 370

Query: 337 --VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             +  +M+  G+ PN VT +S+L  C+  GAL  G++ H    K     D S      + 
Sbjct: 371 FQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRS------LQ 424

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVA 425
            A+ +MYAKC S+  A  +F  +  KN                             R+V 
Sbjct: 425 TAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVV 484

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W +MI  Y+Q+G       L   M  +    +P+  T+   L AC  L+AL  G+ +HA
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEG--FQPDRVTIISILEACGALSALERGKLVHA 542

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
             ++   E     VA  LI MYS+ G++  AR VFD +  R+ V+W +++ GYG HG+G 
Sbjct: 543 EAVKLGLES-DTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGP 601

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F +M KE + P+ +TF  ++ AC  +G+V +G + F  M ++F +    +HY C+
Sbjct: 602 EAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCM 661

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA RL EA E I+ MP EP   +W ALL  C+ H NV+L E AA+ +L LE    
Sbjct: 662 VDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNA 721

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
             Y  LSNIYA AGRW D  ++R +M   G+KK  G S ++      TF   D  HP+  
Sbjct: 722 SVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEID 781

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
            I+  L  L + +K  GY P   F LHDVD+ +K   L  HSEKLA+AYG+L T PGTPI
Sbjct: 782 SIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPI 841

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RI KNLR+CGDCH+A  FIS I   EI+ RD+NRFH+FK G+C+C  +W
Sbjct: 842 RIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  232 bits (591), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 260/532 (48%), Gaps = 58/532 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y      S A  + Q++     +V  W A+I+   + R  + AF L+ +M++ G  
Sbjct: 220 LITMYSKCGEISLACEIFQKMKER--NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS 277

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF  +L +C    +   G  +H+ I   G +++V V NAL+ MY +C+ +  AR+ 
Sbjct: 278 PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARET 337

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSG--DAEG---GLMLFARMTGDVKVQGDGVSLVNAL 247
           FD M +    D++SW+ ++A YAQSG  D E       L  RM  +  V  + V+ ++ L
Sbjct: 338 FDRMSKR---DVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRRE-GVFPNKVTFMSIL 393

Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
            AC+  G   +G+Q                          CG + EA++VF +M+ K+VV
Sbjct: 394 KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           +W +++T Y + G    A  +F +M       NVV+W+ +IAGYAQ G   +  ++   M
Sbjct: 454 AWASLLTMYIKCGDLTSAEKVFSEMSTR----NVVSWNLMIAGYAQSGDIAKVFELLSSM 509

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  G +P+ VT++S+L  C ++ AL  GK  H   +K  L        D +V  +LI MY
Sbjct: 510 KVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLE------SDTVVATSLIGMY 563

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           +KC  V  AR +FD I+  NRD   W  M+  Y Q+G   +A+ LF +M ++   V PN 
Sbjct: 564 SKCGEVTEARTVFDKIS--NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKER--VPPNE 619

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVV 519
            T +  + AC R   ++ GR+I   +++  + M  P   +  C++D+  R+G +  A   
Sbjct: 620 ITFTAVISACGRAGLVQEGREIF-RIMQEDFRMK-PGKQHYGCMVDLLGRAGRLQEAEEF 677

Query: 520 FDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
              +  + ++  W +L+     H     A WA   + +  L P   +  V L
Sbjct: 678 IQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILR--LEPSNASVYVTL 727



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 158/576 (27%), Positives = 271/576 (47%), Gaps = 71/576 (12%)

Query: 109 RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
           +A RL+    A +L   + +RG   +  T+  +++ C +L     G  VH  +   G   
Sbjct: 55  KAGRLK---EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAI 111

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           ++++ N+L+  Y++   ++   Q+F  M    + D+V+W++++AAYA +         F 
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRM---TLRDVVTWSSMIAAYAGNNHPAKAFDTFE 168

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWN 284
           RM  D  ++ + ++ ++ L AC +           M+E+A+++   +K      DV    
Sbjct: 169 RMK-DANIEPNRITFLSILKACNNY---------SMLEKAREIHTVVKASGMETDVAVAT 218

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           A++T YS+ G    A  +F+KM++     NVV+W+A+I   AQ    +EA +++ +M   
Sbjct: 219 ALITMYSKCGEISLACEIFQKMKER----NVVSWTAIIQANAQHRKLNEAFELYEKMLQA 274

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G+ PN VT VSLL+ C +  AL  G+  H +  +R L        D++V NALI MY KC
Sbjct: 275 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET------DVVVANALITMYCKC 328

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-----GANDALALFPQMFQQDKLVKP 459
             +  AR  FD ++   RDV +W+ MI  Y+Q+G       ++   L  +M ++   V P
Sbjct: 329 NCIQDARETFDRMS--KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREG--VFP 384

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYE-------MLIPFVANC---------- 502
           N  T    L AC+   AL  GRQIHA + +  +E        +    A C          
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444

Query: 503 -------------LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
                        L+ MY + GD+ +A  VF  +  RNVVSW  ++ GY   G   K   
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE 504

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
               M+ EG  PD VT + +L AC     +++G K   + + + G+ +       ++ + 
Sbjct: 505 LLSSMKVEGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMY 563

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            +   + EA  + + +    T + W A+L G   H 
Sbjct: 564 SKCGEVTEARTVFDKISNRDT-VAWNAMLAGYGQHG 598



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 221/455 (48%), Gaps = 34/455 (7%)

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           CA L  +  GK        K++ E     D+   N+++  YS+ G       +F++M   
Sbjct: 88  CAKLRRFEDGKMV-----HKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLR 142

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           +V    VTWS++IA YA   H  +A D F +M+   +EPN +T +S+L  C +   L   
Sbjct: 143 DV----VTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKA 198

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           +E H      V+   G    D+ V  ALI MY+KC  + +A  +F  +  K R+V +WT 
Sbjct: 199 REIHT-----VVKASGMET-DVAVATALITMYSKCGEISLACEIFQKM--KERNVVSWTA 250

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I + +Q+   N+A  L+ +M Q    + PNA T    L +C    AL  GR+IH+++  
Sbjct: 251 IIQANAQHRKLNEAFELYEKMLQAG--ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
              E  +  VAN LI MY +   I  AR  FD + +R+V+SW++++ GY   G  DK   
Sbjct: 309 RGLETDV-VVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESL 367

Query: 550 A-----FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
                  ++MR+EG+ P+ VTF+ +L ACS  G ++QG +    +SK  G  +       
Sbjct: 368 DEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK-VGFESDRSLQTA 426

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL--AANRLLELES 662
           I ++  +   + EA ++   M      + W +LL        ++ G+L  A     E+ +
Sbjct: 427 IFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLT-----MYIKCGDLTSAEKVFSEMST 480

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
               S+ L+   YA +G    V  + S MK  G +
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ 515


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/683 (38%), Positives = 396/683 (57%), Gaps = 27/683 (3%)

Query: 154  GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            G  +H        DS++ V   LM MYA+C     A+QLF  +      D+V+W+ I+AA
Sbjct: 348  GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR---DLVAWSAIIAA 404

Query: 214  YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--QCGMMEEAKKV 271
              Q+G  E  L LF  M    K++ + V+L++ L ACA L     GK   C  ++     
Sbjct: 405  LVQTGYPEEALSLFQEMQNQ-KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD- 462

Query: 272  FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                   D+ +  A+V+ Y++ G F  A   F +M   ++    VTW+++I GYAQ G  
Sbjct: 463  ------SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI----VTWNSLINGYAQIGDP 512

Query: 332  HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            + A+D+F +++   + P+  T+V ++  CA +  L  G   H   +K           D 
Sbjct: 513  YNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL------GFESDC 566

Query: 392  MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
             V NALIDMYAKC S+  A  +F+      +D  TW V+I +Y QNG A +A++ F QM 
Sbjct: 567  HVKNALIDMYAKCGSLPSAEFLFNK-TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625

Query: 452  QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
             ++    PN+ T    L A A LAA R G   HA +++  + +    V N LIDMY++ G
Sbjct: 626  LEN--FHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF-LSNTLVGNSLIDMYAKCG 682

Query: 512  DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
             +  +  +F+ +  ++ VSW ++++GY +HG GD+A   F  M++  +  D V+F+ +L 
Sbjct: 683  QLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742

Query: 572  ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
            AC H G+V++G K F SMS ++ I    EHYAC+VDLLGRA   DE +  I+ MP+EP  
Sbjct: 743  ACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802

Query: 632  IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
             +W ALL  CR+H+NV+LGE+A + L++LE      + +LS+IYA +GRW D  + RS M
Sbjct: 803  GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 862

Query: 692  KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
               G+KK PGCSWV+ K     F VGD++HPQ + ++ +   L+++++ +GYVP  S  L
Sbjct: 863  NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVL 922

Query: 752  HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
             +V++E+K   L+ HSE+LA+ + +L T PG+ I+I KNLR+C DCH+   FIS I    
Sbjct: 923  QNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRR 982

Query: 812  IILRDSNRFHHFKEGSCTCKGYW 834
            II+RD+ RFHHF++G C+C  YW
Sbjct: 983  IIVRDATRFHHFEDGICSCNDYW 1005



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 286/622 (45%), Gaps = 80/622 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPP-SHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           LL  CK L  +  IH QIIV    H    +HLI  Y   +    A S+    +P+P  + 
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDS-TPNPSRIL 96

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W N++IR   R +  + A  ++  M+ +G  PD+YTF FVLKAC    + + G   H  I
Sbjct: 97  W-NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEI 155

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              G + +VF+   L+ MY++   L  AR++FD+M +    D+V+WN ++A  +QS D  
Sbjct: 156 DRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR---DVVAWNAMIAGLSQSEDPC 212

Query: 222 GGLMLFARMTGDVKVQGDGVSLVN------------------------ALSACASLGTWS 257
             +  F  M   V V+   VSL+N                          S+  S G   
Sbjct: 213 EAVDFFRSMQL-VGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLID 271

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG ++ A++VF++M  +D VSW  M+ GY+  G F +   LF KM+  NV++N V 
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV- 330

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH-CYT 376
            SAV A  A      E +D+ +                             GKE H C  
Sbjct: 331 -SAVSAFLA----AAETIDLEK-----------------------------GKEIHGCAL 356

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            +R+ S       D++V   L+ MYAKC   + A+ +F  +  + RD+  W+ +I +  Q
Sbjct: 357 QQRIDS-------DILVATPLMVMYAKCGETEKAKQLFWGL--QGRDLVAWSAIIAALVQ 407

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G   +AL+LF +M  Q++ +KPN  TL   L ACA L+ L+ G+ IH + ++   +  +
Sbjct: 408 TGYPEEALSLFQEM--QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDL 465

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
                 L+ MY++ G    A   F+ +  R++V+W SL+ GY   G    A   F ++R 
Sbjct: 466 S-TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
             + PD  T + ++ AC+    +DQG      +  + G  +       ++D+  +   L 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLP 583

Query: 617 EAVELIEGMPMEPTPIIWVALL 638
            A  L          + W  ++
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVII 605



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 228/495 (46%), Gaps = 37/495 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   V+   P+ A  LF +M  +   P+  T   +L AC +L   + G S+H    
Sbjct: 398 WSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTV 457

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  DS++    AL++MYA+C   + A   F+ M      DIV+WN+++  YAQ GD   
Sbjct: 458 KADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR---DIVTWNSLINGYAQIGDPYN 514

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + +F ++     +  D  ++V  + ACA L    +G  C      K  FE     D   
Sbjct: 515 AIDMFYKLRLSA-INPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFE----SDCHV 568

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++ GS   A  LF K    +   + VTW+ +IA Y Q GH  EA+  F QM+
Sbjct: 569 KNALIDMYAKCGSLPSAEFLFNKT---DFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
                PN VT VS+L   A + A   G   H   I+           + +V N+LIDMYA
Sbjct: 626 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM------GFLSNTLVGNSLIDMYA 679

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  +  +F+ +   ++D  +W  M+  Y+ +G  + A+ALF  M  Q+  V+ ++ 
Sbjct: 680 KCGQLXYSEKLFNEM--DHKDTVSWNAMLSGYAVHGHGDRAIALFSLM--QESQVQIDSV 735

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           +    L AC     +  GR+I  + + ++Y  + P + +  C++D+  R+G  D      
Sbjct: 736 SFVSVLSACRHXGLVEEGRKIF-HSMSDKYH-IKPDLEHYACMVDLLGRAGLFDETLGFI 793

Query: 521 DNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYACS---- 574
             +  + +   W +L+    MH        A D + K E   P     L  +YA S    
Sbjct: 794 KVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWA 853

Query: 575 -----HSGMVDQGLK 584
                 S M D GLK
Sbjct: 854 DAGKARSKMNDLGLK 868



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 242/510 (47%), Gaps = 46/510 (9%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN--ALMAMYARCDTLSYARQLFDE 195
           +P +L +C  L        +HA I  SGF  +  + +   L +++ +CD    AR +FD 
Sbjct: 35  YPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSITHLINLYSLFHKCD---LARSVFDS 88

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-- 253
              P     + WN+++ AY +S      L ++  M  +  ++ D  +    L AC     
Sbjct: 89  TPNPSR---ILWNSMIRAYTRSKQYNEALEMYYCMV-EKGLEPDKYTFTFVLKACTGALN 144

Query: 254 ---GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
              G W  G      E  ++  ER    DV     +V  YS++G  + A  +F KM    
Sbjct: 145 LQEGVWFHG------EIDRRGLER----DVFIGAGLVDMYSKMGDLKRAREVFDKMP--- 191

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
            K +VV W+A+IAG +Q     EA+D FR MQ  G+EP+ V+L++L  G   +  + L +
Sbjct: 192 -KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H Y  +R  S          V N LID+Y+KC  VDVAR +FD +   ++D  +W  M
Sbjct: 251 SIHGYVFRRDFSS--------AVSNGLIDLYSKCGDVDVARRVFDQMV--DQDDVSWGTM 300

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           +  Y+ NG   + L LF +M   +  V+ N  +   A +A A    L  G++IH   L+ 
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGN--VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQ 358

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
           + +  I  VA  L+ MY++ G+ + A+ +F  L+ R++V+W++++      G  ++A   
Sbjct: 359 RIDSDI-LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M+ + + P+ VT + +L AC+   ++  G K     + +  + +       +V +  
Sbjct: 418 FQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYA 476

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +      A+     M      + W +L+NG
Sbjct: 477 KCGFFTAALTTFNRMSSRDI-VTWNSLING 505



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 142/295 (48%), Gaps = 31/295 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y      + AL+   R+S     +  WN+LI    ++  P NA  +F ++     +
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSR--DIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD  T   V+ AC  L     G+ +H +I   GF+S+  V NAL+ MYA+C +L  A  L
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F++       D V+WN I+AAY Q+G A+  +  F +M  +     + V+ V+ L A A 
Sbjct: 589 FNK--TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE-NFHPNSVTFVSVLPAAAY 645

Query: 253 LGTWSRG--------------------------KQCGMMEEAKKVFERMKVKDVVSWNAM 286
           L  +  G                           +CG +  ++K+F  M  KD VSWNAM
Sbjct: 646 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAM 705

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           ++GY+  G  + A ALF  M++  V+++ V++ +V++     G   E   +F  M
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSM 760


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/597 (41%), Positives = 367/597 (61%), Gaps = 31/597 (5%)

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW-----NAMVTGYSRIGSFE 297
           +V+ L ACA+ G  S G+                VK  V W     N ++  Y++ G  +
Sbjct: 1   MVSILQACANCGDVSLGR----------AVHGSGVKACVHWKTTFCNTLLDMYAKCGVLD 50

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A  +F  M    V    VTW+++IA YA+ G   EA+ +F +M   G+ P++ T+ ++L
Sbjct: 51  GAILVFDLMSVRTV----VTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVL 106

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             CA  G+L  GK+ H Y  +  +        ++ V NAL+DMYAKC S++ A  +F  +
Sbjct: 107 HACACNGSLENGKDVHNYIRENDMQ------SNIFVCNALMDMYAKCGSMEDANSVFLEM 160

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  D+ +W  MIG YS+N   N+AL+LF  M  +   +KP+  TL+C L ACA LA+L
Sbjct: 161 PVK--DIISWNTMIGGYSKNSLPNEALSLFGDMVLE---MKPDGTTLACILPACASLASL 215

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G+++H ++LRN +      VAN L+DMY + G    AR++FD +  +++++WT ++ G
Sbjct: 216 DRGKEVHGHILRNGF-FSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAG 274

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           YGMHG G+ A   F++MR+ G+ PD V+F+ +LYACSHSG++D+G ++F+ M  E  +  
Sbjct: 275 YGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKP 334

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
           + EHYACIVDLL R+ +L  A + I+ MP+EP   IW ALL+GCRIH +V+L E  A  +
Sbjct: 335 KLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHV 394

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
            ELE E  G Y LL+N YA A +W++V ++R  +   G+KK PGCSW++ K     F  G
Sbjct: 395 FELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAG 454

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           + +HPQ++KI  +L  L  ++K  GY P+T +AL + D  +K   L  HSEKLA+A+GIL
Sbjct: 455 NSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGIL 514

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              P   IR++KNLR+CGDCH    FIS  +  EI+LRDSNRFHHFK+G C C+G+W
Sbjct: 515 NLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 206/463 (44%), Gaps = 91/463 (19%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+AC        G +VH     +        CN L+ MYA+C  L  A  +FD M    
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLM---S 60

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           +  +V+W +++AAYA+ G ++  + LF  M  +  V  D  ++   L ACA  G+   GK
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDRE-GVSPDIFTITTVLHACACNGSLENGK 119

Query: 261 --------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     +CG ME+A  VF  M VKD++SWN M+ GYS+  
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
              +A +LF  M  E                                    ++P+  TL 
Sbjct: 180 LPNEALSLFGDMVLE------------------------------------MKPDGTTLA 203

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +L  CAS+ +L  GKE H + ++           D  V NAL+DMY KC    +AR++F
Sbjct: 204 CILPACASLASLDRGKEVHGHILRN------GFFSDQQVANALVDMYVKCGVPVLARLLF 257

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D I  K  D+ TWTVMI  Y  +G  N+A+  F +M Q    ++P+  +    L AC+  
Sbjct: 258 DMIPTK--DLITWTVMIAGYGMHGFGNNAITTFNEMRQAG--IEPDEVSFISILYACSHS 313

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSW 531
             L  G +    V++++   + P + +  C++D+ +RSG +  A     ++  + +   W
Sbjct: 314 GLLDEGWRFFN-VMQDECN-VKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIW 371

Query: 532 TSLMTGYGMH---GLGDK-AHWAFDQMRKEGLAPDGVTFLVLL 570
            +L++G  +H    L +K A   F+      L P+   + VLL
Sbjct: 372 GALLSGCRIHHDVKLAEKVAEHVFE------LEPENTGYYVLL 408



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 143/298 (47%), Gaps = 32/298 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +LI    R  L D A RLF +M R G  PD +T   VL AC    S   G  VH
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +   SN+FVCNALM MYA+C ++  A  +F EM    + DI+SWNT++  Y+++ 
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEM---PVKDIISWNTMIGGYSKNS 179

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                L LF  M   ++++ DG +L   L ACASL +  RGK+                 
Sbjct: 180 LPNEALSLFGDMV--LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG+   A+ +F+ +  KD+++W  M+ GY   G   +A   F +MRQ  ++
Sbjct: 238 NALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGALLLG 369
            + V++ +++   +  G   E    F  MQ  C ++P +     ++   A  G L + 
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMA 355


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/736 (36%), Positives = 413/736 (56%), Gaps = 70/736 (9%)

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  S  D       +L+A +A    L  A   FD +  P   D V  N +++A+A++ 
Sbjct: 83  AALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAV-PPARRDTVLHNAMMSAFARAS 141

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSA----------------CASLGTWSRG--- 259
            A   + +F  + G   ++ D  S    +SA                C+ L + +     
Sbjct: 142 LAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLS 201

Query: 260 ---------KQCGMME---EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                     +C   E   +A+KV + M  KD ++W  MV GY R G    A ++F+++ 
Sbjct: 202 VSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEV- 260

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
             + K +VV W+A+I+GY Q G   +A ++FR+M    +  +  T  S+LS CA+ G  +
Sbjct: 261 --DGKFDVV-WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFV 317

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------ 421
            GK  H   I+  L  +      L V NAL+ +Y+K   + +A+ +FD +  K+      
Sbjct: 318 HGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNT 375

Query: 422 -----------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
                                  ++  +W VM+  Y   G + DAL LF QM  +D  VK
Sbjct: 376 ILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED--VK 433

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P  +T + A+ AC  L AL+ GRQ+HA++++  +E       N L+ MY++ G ++ AR+
Sbjct: 434 PCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNS-AGNALLTMYAKCGAVNDARL 492

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF  +   + VSW ++++  G HG G +A   FDQM  EG+ PD ++FL +L AC+H+G+
Sbjct: 493 VFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGL 552

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           VD+G  YF+SM ++FGIS   +HYA ++DLLGR+ R+ EA +LI+ MP EPTP IW A+L
Sbjct: 553 VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAIL 612

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           +GCR + ++E G  AA++L  +  + DG+Y LLSN Y+ AGRW D AR+R LM+  GVKK
Sbjct: 613 SGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKK 672

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PGCSW++       F VGD  HP++Q++Y+ L  +  R++ +GYVP T F LHD++  E
Sbjct: 673 EPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHE 732

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +LF HSEKLA+ +G+L   PG  + + KNLRICGDCH+A+ F+S  +  EI++RD  
Sbjct: 733 KEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVR 792

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 793 RFHHFKDGECSCGNYW 808


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/683 (37%), Positives = 398/683 (58%), Gaps = 51/683 (7%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           D L YA  +F+ + +P   +++ WNT++  +A S D    L ++ RM     +  +  S 
Sbjct: 12  DGLPYAISVFETIQEP---NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLP-NSYSF 67

Query: 244 VNALSACASLGTWSRGKQ---------CGM-----------------MEEAKKVFERMKV 277
              L +CA    +  G+Q         CG+                 +E+A+KVF+    
Sbjct: 68  PFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSH 127

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +DVVS  A++TGY+  G F  A  +F ++ + +V    V+W+A+I GY + G   EAL++
Sbjct: 128 RDVVSCTALITGYASRGDFRSARKVFDEITERDV----VSWNAMITGYVENGRYEEALEL 183

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M    + P+  TLVS++S CA  G++ LG++ H +          S    L ++NAL
Sbjct: 184 FKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFS--SSLKIVNAL 241

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID+Y+KC  V+ A  +F+ ++ K  DV +W  +IG Y+      +AL LF +M +  +  
Sbjct: 242 IDLYSKCGDVETAFGLFEGLSCK--DVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC- 298

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN------CLIDMYSRSG 511
            PN  TL   L ACA L A+  GR IH Y+ +      +  V N       LIDMY++ G
Sbjct: 299 -PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKK-----LKGVTNETSLRTSLIDMYAKCG 352

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           DI+ A  VF+++  R++ SW +++ G+ MHG  + A   F +MR   + PD +TF+ LL 
Sbjct: 353 DIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSHSG++D G + F SM++++ ++ + EHY C++DLLG +    EA E+I  MPMEP  
Sbjct: 413 ACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDG 472

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
           +IW +LL  C+ H N+EL E  A +L+++E E  GSY LLSNIYA AGRW+DVAR+R ++
Sbjct: 473 VIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVL 532

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
              G+KK PGCS ++       F +GD+ HP+ ++IY +L  +  +++  G+ P TS  L
Sbjct: 533 NGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVL 592

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
            ++++E K   L  HSEKLA+A+G+++T PGT + I KNLR+C +CH A   IS I   E
Sbjct: 593 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 652

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           I+ RD  RFHHF++G C+C  YW
Sbjct: 653 IVARDRTRFHHFRDGVCSCCDYW 675



 Score =  195 bits (496), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 235/488 (48%), Gaps = 49/488 (10%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A+S+ + I     ++  WN ++R       P +A  ++++M+  G  P+ Y+FPF+LK+C
Sbjct: 17  AISVFETIQEP--NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSC 74

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--- 202
            +  +   G  +HA +   G   + +V  +L++MYAR   L  AR++FD      +    
Sbjct: 75  AKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCT 134

Query: 203 -------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                                    D+VSWN ++  Y ++G  E  L LF  M     V+
Sbjct: 135 ALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM-RTNVR 193

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D  +LV+ +SACA  G+   G+Q     +             +  NA++  YS+ G  E
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIV-NALIDLYSKCGDVE 252

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            AF LF+ +  ++V    V+W+ +I GY       EAL +F++M   G  PN VTL+S+L
Sbjct: 253 TAFGLFEGLSCKDV----VSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL 308

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             CA +GA+ +G+  H Y  K++  V     ++  +  +LIDMYAKC  ++ A  +F+++
Sbjct: 309 PACAHLGAIDIGRWIHVYIDKKLKGV----TNETSLRTSLIDMYAKCGDIEAAHQVFNSM 364

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               R +++W  MI  ++ +G AN A  LF +M  +   V+P+  T    L AC+    L
Sbjct: 365 L--YRSLSSWNAMIFGFAMHGRANAAFDLFSRM--RGNRVEPDDITFVGLLSACSHSGLL 420

Query: 478 RFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSL 534
             GRQI  +    Q   L P + +  C+ID+   SG    A  +   +  + + V W SL
Sbjct: 421 DLGRQI--FKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSL 478

Query: 535 MTGYGMHG 542
           +     HG
Sbjct: 479 LKACKKHG 486


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/724 (36%), Positives = 416/724 (57%), Gaps = 51/724 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM---YARCDTLSYARQLFDEMF 197
           +L  C  L S R    +HA +  +G  +  +  + L+ +       D L YA  +F+ + 
Sbjct: 39  LLHNCKTLQSLRL---IHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQ 95

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P   +++ WNT+   +A S D    L L+  M   + +  +  +    L +CA    + 
Sbjct: 96  EP---NLLIWNTMFRGHALSSDPVSALKLYVCMIS-LGLLPNSYTFPFLLKSCAKSKAFK 151

Query: 258 RGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G +E+A+KVF+R   +DVVS+ A++ GY+
Sbjct: 152 EGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYA 211

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G  E A  LF ++  ++V    V+W+A+I+GYA+ G+  EAL++F++M    + P+  
Sbjct: 212 SRGYIESAQKLFDEIPVKDV----VSWNAMISGYAETGNYKEALELFKEMMKTNIRPDES 267

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+V+++S CA  G++ LG++ H +        D     +L ++N+L+D+Y+KC  ++ A 
Sbjct: 268 TMVTVVSACAQSGSIELGRQVHSWI------DDHGFGSNLKIVNSLMDLYSKCGELETAC 321

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F+ +  K  DV +W  +IG Y+      +AL LF +M +  +  +PN  T+   L AC
Sbjct: 322 GLFEGLLYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--RPNDVTMLSILPAC 377

Query: 472 ARLAALRFGRQIHAYV-LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           A L A+  GR IH Y+  R +       +   LIDMY++ GDI+ A  VF+++  +++ S
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++ G+ MHG  D A   F +MRK G+ PD +TF+ LL ACS SGM+D G   F +M+
Sbjct: 438 WNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMT 497

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +++ I+ + EHY C++DLLG +    EA E+I  M MEP  +IW +LL  C+I  NVELG
Sbjct: 498 QDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELG 557

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E  A  L+++E E  G Y LLSNIYA AGRW +VA+IR+L+   G+KK PGCS ++    
Sbjct: 558 ESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSV 617

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F +GD+ HP++++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKL
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 677

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G+++T PGT + I KNLR+C +CH A   IS I   EII RD  RFHHF++G C+C
Sbjct: 678 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 737

Query: 831 KGYW 834
             YW
Sbjct: 738 NDYW 741



 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 168/656 (25%), Positives = 287/656 (43%), Gaps = 154/656 (23%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYV--SHNAPSP-ALSLLQRISPSP 97
           LL  CK+L  + LIH Q+I   L  T+   S L+   V   H    P A+S+ + I    
Sbjct: 39  LLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEP- 97

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  WN + R       P +A +L++ M+  G  P+ YTFPF+LK+C +  + + G  +
Sbjct: 98  -NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQI 156

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD----------------------- 194
           H  +   G+D ++FV  +L+++Y +   L  AR++FD                       
Sbjct: 157 HGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYI 216

Query: 195 ----EMF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
               ++F +  + D+VSWN +++ YA++G+ +  L LF  M     ++ D  ++V  +SA
Sbjct: 217 ESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM-KTNIRPDESTMVTVVSA 275

Query: 250 CASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSW 283
           CA  G+   G+Q                          CG +E A  +FE +  KDV+SW
Sbjct: 276 CAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISW 335

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++ GY+ +  +++A  LF++M +                                   
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRS---------------------------------- 361

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G  PN VT++S+L  CA +GA+ +G+  H Y  KR+ S   +      +  +LIDMYAK
Sbjct: 362 -GERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS----LRTSLIDMYAK 416

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  ++ A  +F++I  K+  +++W  MI  ++ +G A+ A  +F +M +    ++P+  T
Sbjct: 417 CGDIEAAHQVFNSILHKS--LSSWNAMIFGFAMHGRADAAFDIFSRMRKIG--IEPDDIT 472

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFD 521
               L AC+R   L  GR  H +    Q   + P + +  C+ID+   SG    A  + +
Sbjct: 473 FVGLLSACSRSGMLDLGR--HIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMIN 530

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           N++                                  + PDGV +  LL AC   G V+ 
Sbjct: 531 NME----------------------------------MEPDGVIWCSLLKACKIRGNVEL 556

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDL------LGRANRLDEAVELIEGMPMEPTP 631
           G  +  ++     I    E+  C V L       GR N + +   L+    M+  P
Sbjct: 557 GESFAQNL-----IKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVP 607


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/721 (37%), Positives = 400/721 (55%), Gaps = 68/721 (9%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           NVF  N+L++M+A+   L+ AR +F EM +    D VSW  +V    ++G     +    
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPER---DAVSWTVMVVGLNRAGRFGEAIKTLL 153

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            MT D        +L N LS+CA     + G++                          C
Sbjct: 154 DMTAD-GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G  E A  VFERM V+ V SWNAMV+  + +G  + A +LF+ M   ++    V+W+A+I
Sbjct: 213 GDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMI 268

Query: 323 AGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           AGY Q G   +AL +F R +    + P+  T+ S+LS CA++G + +GK+ H Y ++  +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 382 S-------------------------VDGSHPDDLMVIN--ALIDMYAKCKSVDVARVMF 414
           +                         +D S   DL VI+  AL++ Y K   ++ AR MF
Sbjct: 329 AYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             +   NRDV  WT MI  Y QNG  ++A+ LF  M       +PN++TL+  L  CA L
Sbjct: 389 GVM--NNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP--EPNSYTLAAVLSVCASL 444

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTS 533
           A L +G+QIH   +R+  E     V+N +I MY+RSG    AR +FD +  ++  ++WTS
Sbjct: 445 ACLDYGKQIHCRAIRSLLEQ-SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++     HG G++A   F++M + G+ PD +T++ +L ACSH+G V++G +Y+D +  E 
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 563

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            I+    HYAC+VDLL RA    EA E I  MP+EP  I W +LL+ CR+H N EL ELA
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A +LL ++    G+Y+ ++N+Y+  GRW D ARI    K   V+K  G SW   +     
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 683

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F   D  HPQ   +Y + A + + IK  G+VP     LHDVDDE K +LL  HSEKLA+A
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIA 743

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+++T   T +R+ KNLR+C DCH+AI  IS + + EII+RD+ RFHHF++G C+CK Y
Sbjct: 744 FGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDY 803

Query: 834 W 834
           W
Sbjct: 804 W 804



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 237/495 (47%), Gaps = 74/495 (14%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A +  L M   G+ P ++T   VL +C    +   G  VH+ +   G  S V V N+++ 
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 179 MYARCDTLSYARQLFDEMFQPGIC----------------------------DIVSWNTI 210
           MY +C     A  +F+ M    +                              IVSWN +
Sbjct: 208 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 267

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------- 261
           +A Y Q+G     L LF+RM  +  +  D  ++ + LSACA+LG    GKQ         
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 262 -----------------CGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFAL 302
                             G +E A+++ ++    D  V+S+ A++ GY +IG  E A  +
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F  M       +VV W+A+I GY Q G   EA+D+FR M  CG EPN  TL ++LS CAS
Sbjct: 388 FGVMNNR----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           +  L  GK+ HC  I+ +L    S      V NA+I MYA+  S   AR MFD +  + +
Sbjct: 444 LACLDYGKQIHCRAIRSLLEQSSS------VSNAIITMYARSGSFPWARRMFDQVCWR-K 496

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           +  TWT MI + +Q+G   +A+ LF +M +    V+P+  T    L AC+    +  G++
Sbjct: 497 ETITWTSMIVALAQHGQGEEAVGLFEEMLRAG--VEPDRITYVGVLSACSHAGFVNEGKR 554

Query: 483 IHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYG 539
            +  + +N+++ + P +++  C++D+ +R+G    A+     +  + + ++W SL++   
Sbjct: 555 YYDQI-KNEHQ-IAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACR 612

Query: 540 MHGLGDKAHWAFDQM 554
           +H   + A  A +++
Sbjct: 613 VHKNAELAELAAEKL 627



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 143/305 (46%), Gaps = 44/305 (14%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSV 157
           S+  WNA+I    +  L   A +LF +M+      PDE+T   VL AC  L + R G  V
Sbjct: 260 SIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV 319

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--------------- 202
           HA I  +    N  V NAL++ YA+  ++  AR++ D+  +  +                
Sbjct: 320 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIG 379

Query: 203 ---------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
                          D+V+W  ++  Y Q+G  +  + LF  M      + +  +L   L
Sbjct: 380 DMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI-TCGPEPNSYTLAAVL 438

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM- 306
           S CASL     GKQ       + +   ++    VS NA++T Y+R GSF  A  +F ++ 
Sbjct: 439 SVCASLACLDYGKQI----HCRAIRSLLEQSSSVS-NAIITMYARSGSFPWARRMFDQVC 493

Query: 307 -RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
            R+E      +TW+++I   AQ G G EA+ +F +M   G+EP+ +T V +LS C+  G 
Sbjct: 494 WRKE-----TITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 366 LLLGK 370
           +  GK
Sbjct: 549 VNEGK 553



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 28/258 (10%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W A+I    +    D A  LF  M+  G  P+ YT   VL  C  L     G  +H 
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC---DIVSWNTIVAAYAQ 216
               S  + +  V NA++ MYAR  +  +AR++FD+     +C   + ++W +++ A AQ
Sbjct: 456 RAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ-----VCWRKETITWTSMIVALAQ 510

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G  E  + LF  M     V+ D ++ V  LSAC+           G + E K+ ++++K
Sbjct: 511 HGQGEEAVGLFEEML-RAGVEPDRITYVGVLSACS---------HAGFVNEGKRYYDQIK 560

Query: 277 VKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            +  ++     +  MV   +R G F +A    ++M    V+ + + W ++++  A R H 
Sbjct: 561 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLS--ACRVHK 615

Query: 332 HEALDVFRQMQFCGLEPN 349
           +  L      +   ++PN
Sbjct: 616 NAELAELAAEKLLSIDPN 633



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 62/234 (26%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL------------- 456
           AR +FD I    R+V TW  ++  ++++G   DA  +F +M ++D +             
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG 143

Query: 457 ----------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
                             P  FTL+  L +CA   A   GR++H++V++      +P VA
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVP-VA 202

Query: 501 NCLIDMYSRSGDIDTARVV-------------------------------FDNLKQRNVV 529
           N +++MY + GD +TA  V                               F+++  R++V
Sbjct: 203 NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 262

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDGVTFLVLLYACSHSGMVDQG 582
           SW +++ GY  +GL  KA   F +M  E  +APD  T   +L AC++ G V  G
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/724 (36%), Positives = 414/724 (57%), Gaps = 51/724 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM---AMYARCDTLSYARQLFDEMF 197
           +L  C  L S R    +HA +  +G  +  +  + L+    +    D L YA  +FD + 
Sbjct: 8   LLHXCKTLQSLRI---IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQ 64

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P    ++ WNT+   +A S D    L L+  M   + +  +  +    L +CA    + 
Sbjct: 65  EP---XLLIWNTMFRGHALSSDPVSALKLYVCMVS-LGLLPNSYTFPFLLKSCAKSXAFK 120

Query: 258 RGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G +E+A+KV ++   +DVVS+ A++TGY+
Sbjct: 121 EGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYA 180

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G  E A  +F ++  ++V    V+W+A I+GYA+ G+  EAL++F++M    + P+  
Sbjct: 181 SRGXIESAHKMFDEIPVKDV----VSWNAXISGYAETGNYKEALELFKKMMKTNVRPDES 236

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+V++LS CA  G++ LG++ H +        D     +L ++NALID+Y+KC  ++ A 
Sbjct: 237 TMVTVLSACAQSGSIELGRQVHSWI------NDHGFGXNLKIVNALIDLYSKCGELETAC 290

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  ++  N+DV +W  +IG Y+      +AL LF  M +  +  KPN  T+   L AC
Sbjct: 291 GLFQGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE--KPNDVTMLSILSAC 346

Query: 472 ARLAALRFGRQIHAYVLRNQYEML-IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           A L A+  GR IH Y+ +    +     +   LIDMY++ GDI+ A+ VFD++  R++ S
Sbjct: 347 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS 406

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++ G+ MHG  + A   F +MRK G+ PD +TF+ LL ACSHSGM+D G   F SM+
Sbjct: 407 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 466

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +++ +  + EHY C++DL G +    EA ++I  M MEP  +IW +LL  C++H NVELG
Sbjct: 467 RDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELG 526

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E  A  L+++E E  GSY LLSNIYA A RW +VA+ R+L+   G+KK PGCS ++    
Sbjct: 527 ESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 586

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F +GD+ HP++++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKL
Sbjct: 587 VHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 646

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G+++T PGT + I KNLR+C +CH A   IS I   EII RD  RFHHF++G C+C
Sbjct: 647 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSC 706

Query: 831 KGYW 834
             YW
Sbjct: 707 NDYW 710



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 166/572 (29%), Positives = 279/572 (48%), Gaps = 65/572 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYV--SHNAPSP-ALSLLQRISPSP 97
           LL  CK+L  + +IH Q+I   L  T+   S L+   V   H    P A+S+   I    
Sbjct: 8   LLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPX 67

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
             +  WN + R       P +A +L++ M+  G  P+ YTFPF+LK+C +  + + G  +
Sbjct: 68  LLI--WNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125

Query: 158 HAVICSSGFDSNVFVCNALMAMYARC----------------DTLSY------------- 188
           H  +   GFD ++++  +L++MY +                 D +SY             
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXI 185

Query: 189 --ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
             A ++FDE+    + D+VSWN  ++ YA++G+ +  L LF +M     V+ D  ++V  
Sbjct: 186 ESAHKMFDEI---PVKDVVSWNAXISGYAETGNYKEALELFKKMM-KTNVRPDESTMVTV 241

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           LSACA  G+   G+Q             +K+      NA++  YS+ G  E A  LF+ +
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIV-----NALIDLYSKCGELETACGLFQGL 296

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             +    +V++W+ +I GY       EAL +F+ M   G +PN VT++S+LS CA +GA+
Sbjct: 297 SNK----DVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAI 352

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            +G+  H Y  KR+  V  +      +  +LIDMYAKC  ++ A+ +FD++   NR +++
Sbjct: 353 DIGRWIHVYIDKRLKGVTNASS----LRTSLIDMYAKCGDIEAAQQVFDSML--NRSLSS 406

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  MI  ++ +G AN A  +F +M +    ++P+  T    L AC+    L  GR I   
Sbjct: 407 WNAMIFGFAMHGRANAAFDIFSRMRKNG--IEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG--- 542
           + R+   M       C+ID+   SG    A  + + ++ + + V W SL+    MHG   
Sbjct: 465 MTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVE 524

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           LG+   +A + ++ E   P     L  +YA +
Sbjct: 525 LGES--YAQNLIKIEPENPGSYVLLSNIYATA 554


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 289/831 (34%), Positives = 449/831 (54%), Gaps = 65/831 (7%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPS--HLIAA------YVSHNAPSPALSLLQRISP 95
            ++CK++T++  +H QI    L H P S  +LI++      + S      AL L    + 
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
              + + +++LIR      L   A  +F Q+M  G  PD +TFPFVL AC +  +   G 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH  I   GF+ ++FV N+L+  Y  C  +   R++FD+M +    ++VSW +++  YA
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSER---NVVSWTSLIGGYA 216

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-CGMMEEAKKVFER 274
           + G  +  + LF  M  +V ++ + V++V  +SACA L     G+Q C  + E +     
Sbjct: 217 KRGCYKEAVSLFFEMV-EVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNA 275

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           + V      NA+V  Y + G+ + A    +K+  E V  N+V ++ +++ Y ++G   E 
Sbjct: 276 LMV------NALVDMYMKCGAIDKA----RKIFDECVDKNLVLYNTIMSNYVRQGLAREV 325

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L V  +M   G  P+ +T++S +S C+ +  +  GK  H Y ++  L    +      V 
Sbjct: 326 LAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDN------VC 379

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNR-----------------------------DVA 425
           NA+I+MY KC   ++A  +FD +  K R                             D+ 
Sbjct: 380 NAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLV 439

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  MIG+  Q     +A+ LF  M  Q + +  +  T+     AC  L AL   + IH 
Sbjct: 440 SWNTMIGALVQESMFKEAIELFRVM--QSEGITADKVTMVGVASACGYLGALDLAKWIHG 497

Query: 486 YVLRN--QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           Y+ +    ++M    +   L+DM++R GD  +A  VF+ + +R+V +WT+ +    M G 
Sbjct: 498 YIKKKDIHFDM---HLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGN 554

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G  A   FD+M ++G+ PDGV F+ LL A SH G+V+QG   F SM   +GI+ +A HY 
Sbjct: 555 GTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYG 614

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C+VDLLGRA  L EA+ LI  M MEP  +IW +LL  CR+H NV++   AA R+ EL+ E
Sbjct: 615 CMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPE 674

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
           + G + LLSNIYA+AGRW DVA++R  +K  G  K PG S ++       F  GD +HP+
Sbjct: 675 RTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPE 734

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGT 783
              I  +L  +  R++ +GYVP  +  L DV+++EK  LL  HSEKLA+A+ +++T  G 
Sbjct: 735 MTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGM 794

Query: 784 PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           PIR+ KNLRIC DCHS    +S   + EII+RD+NRFH F++G C+C  YW
Sbjct: 795 PIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/742 (37%), Positives = 410/742 (55%), Gaps = 38/742 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+      ++      LF +M   G  P+ +TF  VL A     +   G  VH
Sbjct: 165 NVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH 224

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A     G  S+VFVCN+LM MYA+C  +  A+ +F+ M      D+VSWNT++A    + 
Sbjct: 225 AQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR---DMVSWNTLMAGLQLNE 281

Query: 219 DAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---CGMMEEAKKVFE 273
                L LF  +R T     Q    +    +  CA+L   +  +Q   C +         
Sbjct: 282 CELEALQLFHESRATMGKMTQS---TYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            M         A+   YS+ G   DA  +F          NVV+W+A+I+G  Q G    
Sbjct: 339 VM--------TALADAYSKCGELADALNIFSMTTGSR---NVVSWTAIISGCIQNGDIPL 387

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+ +F +M+   + PN  T  ++L    S+    L  + H   IK       ++     V
Sbjct: 388 AVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKT------NYQHIPFV 437

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             AL+  Y+K  S + A  +F  I  + +DV  W+ M+  ++Q G    A  LF +M  Q
Sbjct: 438 GTALLASYSKFGSTEDALSIFKMI--EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 454 DKLVKPNAFTLSCALMACA-RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
              +KPN FT+S  + ACA   A +  GRQ HA  ++ +Y   I  V++ L+ MYSR G+
Sbjct: 496 G--IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAI-CVSSALVSMYSRKGN 552

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ID+A++VF+    R++VSW S+++GY  HG   KA   F QM   G+  DGVTFL ++  
Sbjct: 553 IDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMG 612

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+H+G+V +G +YFDSM ++  I+   EHYAC+VDL  RA +LDE + LI  MP     +
Sbjct: 613 CTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAM 672

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W  LL  CR+H NVELG+ +A++LL LE     +Y LLSNIYA AG+WK+   +R LM 
Sbjct: 673 VWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMD 732

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
           +  VKK  GCSW+Q K    +F   D++HP S +IY+ L  ++ R+K  GY P TSF LH
Sbjct: 733 YRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLH 792

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           D+ +++K  +L  HSE+LALA+G++ T PGTP++I KNLR+CGDCH  +  +SMI + EI
Sbjct: 793 DIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREI 852

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           I+RD +RFHHF  G+C+C  +W
Sbjct: 853 IMRDCSRFHHFNGGACSCGDFW 874



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 187/387 (48%), Gaps = 27/387 (6%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF--ARMTGDVKVQGDGVSLVNA 246
           AR   DE+  P     V  N ++  YA+ G     L  F  AR  G   V  D  +L   
Sbjct: 51  ARYPLDEI--PRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGG---VLVDSATLSCV 105

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L AC S+     G+Q   +   K   +R    +V +  ++V  Y + GS  +   +F+ M
Sbjct: 106 LKACRSVPDRVLGEQLHCLC-VKCGHDR---GEVSAGTSLVDMYMKCGSVCEGIEVFEGM 161

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                K NVVTW++++ G A      E + +F +M+  G+ PN  T  S+LS  AS GAL
Sbjct: 162 P----KKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LG+  H  ++K            + V N+L++MYAKC  V+ A+ +F+ +  + RD+ +
Sbjct: 218 DLGQRVHAQSVKFGCR------SSVFVCNSLMNMYAKCGLVEDAKSVFNWM--ETRDMVS 269

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  ++     N    +AL LF +   +  + K    T +  +  CA L  L   RQ+H+ 
Sbjct: 270 WNTLMAGLQLNECELEALQLFHE--SRATMGKMTQSTYATVIKLCANLKQLALARQLHSC 327

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD-NLKQRNVVSWTSLMTGYGMHGLGD 545
           VL++ +  L   V   L D YS+ G++  A  +F      RNVVSWT++++G   +G   
Sbjct: 328 VLKHGFH-LTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP 386

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYA 572
            A   F +MR++ + P+  T+  +L A
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 32/313 (10%)

Query: 56  IHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH Q+I  N  H+P   + L+A+Y    +   ALS+ + I      V  W+A++    + 
Sbjct: 422 IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQK--DVVAWSAMLSCHAQA 479

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC--GSSVHAVICSSGFDSNVF 171
              + A  LF +M  +G  P+E+T   V+ AC   PS+    G   HA+     +   + 
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACA-CPSAGVDQGRQFHAISIKYRYHDAIC 538

Query: 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT 231
           V +AL++MY+R   +  A+ +F+        D+VSWN++++ YAQ G +   +  F +M 
Sbjct: 539 VSSALVSMYSRKGNIDSAQIVFERQTDR---DLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD------VVSWNA 285
               +Q DGV+ +  +  C            G++ E ++ F+ M V+D      +  +  
Sbjct: 596 AS-GIQMDGVTFLAVIMGCT---------HNGLVVEGQQYFDSM-VRDHKINPTMEHYAC 644

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           MV  YSR G  ++  +L + M         + W  ++   A R H +  L  F   +   
Sbjct: 645 MVDLYSRAGKLDETMSLIRDM---PFPAGAMVWRTLLG--ACRVHKNVELGKFSADKLLS 699

Query: 346 LEPNVVTLVSLLS 358
           LEP+  +   LLS
Sbjct: 700 LEPHDSSTYVLLS 712



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR   D I  ++  V    V+   Y++ G   + L  F    +   LV  ++ TLSC L 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLF-DYARRGMVLEVLDQFSVARRGGVLV--DSATLSCVLK 107

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC  +     G Q+H   ++  ++         L+DMY + G +     VF+ + ++NVV
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +WTSL+TG     +  +    F +MR EG+ P+  TF  +L A +  G +D G +   + 
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR-VHAQ 226

Query: 590 SKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           S +FG   R+  + C  ++++  +   +++A  +   M      + W  L+ G +++
Sbjct: 227 SVKFG--CRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDM-VSWNTLMAGLQLN 280


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/742 (37%), Positives = 410/742 (55%), Gaps = 38/742 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+      ++      LF +M   G  P+ +TF  VL A     +   G  VH
Sbjct: 165 NVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH 224

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A     G  S+VFVCN+LM MYA+C  +  A+ +F+ M      D+VSWNT++A    + 
Sbjct: 225 AQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR---DMVSWNTLMAGLQLNE 281

Query: 219 DAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---CGMMEEAKKVFE 273
                L LF  +R T     Q    +    +  CA+L   +  +Q   C +         
Sbjct: 282 CELEALQLFHESRATMGKMTQS---TYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            M         A+   YS+ G   DA  +F          NVV+W+A+I+G  Q G    
Sbjct: 339 VM--------TALADAYSKCGELADALNIFSMTTGSR---NVVSWTAIISGCIQNGDIPL 387

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+ +F +M+   + PN  T  ++L    S+    L  + H   IK       ++     V
Sbjct: 388 AVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKT------NYQHIPSV 437

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             AL+  Y+K  S + A  +F  I  + +DV  W+ M+  ++Q G    A  LF +M  Q
Sbjct: 438 GTALLASYSKFGSTEDALSIFKMI--EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 454 DKLVKPNAFTLSCALMACA-RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
              +KPN FT+S  + ACA   A +  GRQ HA  ++ +Y   I  V++ L+ MYSR G+
Sbjct: 496 G--IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAI-CVSSALVSMYSRKGN 552

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ID+A++VF+    R++VSW S+++GY  HG   KA   F QM   G+  DGVTFL ++  
Sbjct: 553 IDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMG 612

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+H+G+V +G +YFDSM ++  I+   EHYAC+VDL  RA +LDE + LI  MP     +
Sbjct: 613 CTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAM 672

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W  LL  CR+H NVELG+ +A++LL LE     +Y LLSNIYA AG+WK+   +R LM 
Sbjct: 673 VWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMD 732

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
           +  VKK  GCSW+Q K    +F   D++HP S +IY+ L  ++ R+K  GY P TSF LH
Sbjct: 733 YRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLH 792

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           D+ +++K  +L  HSE+LALA+G++ T PGTP++I KNLR+CGDCH  +  +SMI + EI
Sbjct: 793 DIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREI 852

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           I+RD +RFHHF  G+C+C  +W
Sbjct: 853 IMRDCSRFHHFNGGACSCGDFW 874



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 187/387 (48%), Gaps = 27/387 (6%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF--ARMTGDVKVQGDGVSLVNA 246
           AR   DE+  P     V  N ++  YA+ G     L  F  AR  G   V  D  +L   
Sbjct: 51  ARYPLDEI--PRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGG---VLVDSATLSCV 105

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L AC S+     G+Q   +   K   +R    +V +  ++V  Y + GS  +   +F+ M
Sbjct: 106 LKACRSVPDRVLGEQLHCLC-VKCGHDR---GEVSAGTSLVDMYMKCGSVCEGIEVFEGM 161

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                K NVVTW++++ G A      E + +F +M+  G+ PN  T  S+LS  AS GAL
Sbjct: 162 P----KKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LG+  H  ++K            + V N+L++MYAKC  V+ A+ +F+ +  + RD+ +
Sbjct: 218 DLGQRVHAQSVKFGCR------SSVFVCNSLMNMYAKCGLVEDAKSVFNWM--ETRDMVS 269

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  ++     N    +AL LF +   +  + K    T +  +  CA L  L   RQ+H+ 
Sbjct: 270 WNTLMAGLQLNECELEALQLFHE--SRATMGKMTQSTYATVIKLCANLKQLALARQLHSC 327

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD-NLKQRNVVSWTSLMTGYGMHGLGD 545
           VL++ +  L   V   L D YS+ G++  A  +F      RNVVSWT++++G   +G   
Sbjct: 328 VLKHGFH-LTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP 386

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYA 572
            A   F +MR++ + P+  T+  +L A
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 32/313 (10%)

Query: 56  IHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH Q+I  N  H+P   + L+A+Y    +   ALS+ + I      V  W+A++    + 
Sbjct: 422 IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQK--DVVAWSAMLSCHAQA 479

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC--GSSVHAVICSSGFDSNVF 171
              + A  LF +M  +G  P+E+T   V+ AC   PS+    G   HA+     +   + 
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACA-CPSAGVDQGRQFHAISIKYRYHDAIC 538

Query: 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT 231
           V +AL++MY+R   +  A+ +F+        D+VSWN++++ YAQ G +   +  F +M 
Sbjct: 539 VSSALVSMYSRKGNIDSAQIVFERQTDR---DLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD------VVSWNA 285
               +Q DGV+ +  +  C            G++ E ++ F+ M V+D      +  +  
Sbjct: 596 AS-GIQMDGVTFLAVIMGCT---------HNGLVVEGQQYFDSM-VRDHKINPTMEHYAC 644

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           MV  YSR G  ++  +L + M         + W  ++   A R H +  L  F   +   
Sbjct: 645 MVDLYSRAGKLDETMSLIRDM---PFPAGAMVWRTLLG--ACRVHKNVELGKFSADKLLS 699

Query: 346 LEPNVVTLVSLLS 358
           LEP+  +   LLS
Sbjct: 700 LEPHDSSTYVLLS 712



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR   D I  ++  V    V+   Y++ G   + L  F    +   LV  ++ TLSC L 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLF-DYARRGMVPEVLDQFSVARRGGVLV--DSATLSCVLK 107

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC  +     G Q+H   ++  ++         L+DMY + G +     VF+ + ++NVV
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +WTSL+TG     +  +    F +MR EG+ P+  TF  +L A +  G +D G +   + 
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR-VHAQ 226

Query: 590 SKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           S +FG   R+  + C  ++++  +   +++A  +   M      + W  L+ G +++
Sbjct: 227 SVKFG--CRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDM-VSWNTLMAGLQLN 280


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 414/749 (55%), Gaps = 51/749 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN  I   +R    D+A R+F  M RR       +  +     G L +++   S+   + 
Sbjct: 49  WNKAISSHMRNGHCDSALRVFNSMPRRS------SVSYNAMISGYLRNAKF--SLARDLF 100

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + ++F  N ++  Y R   L  A +LFD M +    D+VSWN +++ YAQ+G  + 
Sbjct: 101 DKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKK---DVVSWNAMLSGYAQNGFVDE 157

Query: 223 GLMLFARMTGDVKVQGDGV--------SLVNALSACASLGTWSR-GKQC--------GMM 265
              +F +M     +  +G+         L  A     S   W      C         M+
Sbjct: 158 AREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNML 217

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
            +A+++F+RM V+DV+SWN M++GY+++G    A  LF     E+   +V TW+A+++GY
Sbjct: 218 GDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF----NESPIRDVFTWTAMVSGY 273

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            Q G   EA   F +M       N ++  ++L+G      +++  E       R +S   
Sbjct: 274 VQNGMVDEARKYFDEMPV----KNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISS-- 327

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
                    N +I  Y +   +  AR +FD +    RD  +W  +I  Y+QNG   +AL 
Sbjct: 328 --------WNTMITGYGQNGGIAQARKLFDMMP--QRDCVSWAAIISGYAQNGHYEEALN 377

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           +F +M +  +    N  T SCAL  CA +AAL  G+Q+H  V++  +E    FV N L+ 
Sbjct: 378 MFVEMKRDGE--SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGC-FVGNALLG 434

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY + G  D A  VF+ +++++VVSW +++ GY  HG G +A   F+ M+K G+ PD +T
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
            + +L ACSHSG++D+G +YF SM +++ +   ++HY C++DLLGRA RL+EA  L+  M
Sbjct: 495 MVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM 554

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P +P    W ALL   RIH N ELGE AA  + ++E +  G Y LLSN+YA +GRW DV 
Sbjct: 555 PFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVG 614

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           ++RS M+  GV+K  G SWV+ +    TF VGD  HP+  +IY  L  L  +++  GYV 
Sbjct: 615 KMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVS 674

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T   LHDV++EEK  +L  HSEKLA+A+GILT   G PIR+ KNLR+C DCH+AI  IS
Sbjct: 675 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHIS 734

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I+   IILRDS+RFHHF EG C+C  YW
Sbjct: 735 KIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 173/383 (45%), Gaps = 42/383 (10%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           ++VTW+  I+ + + GH   AL VF  M       + V+  +++SG        L ++  
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMP----RRSSVSYNAMISGYLRNAKFSLARDL- 99

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
                     D     DL   N ++  Y + + +  A  +FD + PK +DV +W  M+  
Sbjct: 100 ---------FDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFD-LMPK-KDVVSWNAMLSG 148

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+QNG  ++A  +F      +K+   N+ + +  L A      L+  R++  +  ++ +E
Sbjct: 149 YAQNGFVDEAREVF------NKMPHRNSISWNGLLAAYVHNGRLKEARRL--FESQSNWE 200

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           ++     NCL+  Y +   +  AR +FD +  R+V+SW ++++GY   G   +A   F+ 
Sbjct: 201 LI---SWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN- 256

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
              E    D  T+  ++     +GMVD+  KYFD M  +  IS     Y  ++    +  
Sbjct: 257 ---ESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEIS-----YNAMLAGYVQYK 308

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG-SYTLLS 672
           ++  A EL E MP       W  ++ G   +  +      A +L ++  ++D  S+  + 
Sbjct: 309 KMVIAGELFEAMPCRNIS-SWNTMITGYGQNGGIA----QARKLFDMMPQRDCVSWAAII 363

Query: 673 NIYANAGRWKDVARIRSLMKHTG 695
           + YA  G +++   +   MK  G
Sbjct: 364 SGYAQNGHYEEALNMFVEMKRDG 386



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 32/250 (12%)

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
           ++  K+ D+ TW   I S+ +NG  + AL +F  M        P   ++S   M    L 
Sbjct: 38  SVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSM--------PRRSSVSYNAMISGYLR 89

Query: 476 ALRFGRQIHAYVLRNQYEMLIP---FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
             +F       + R+ ++ +     F  N ++  Y R+  +  A  +FD + +++VVSW 
Sbjct: 90  NAKFS------LARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWN 143

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           ++++GY  +G  D+A   F++M       + +++  LL A  H+G + +  + F+S S  
Sbjct: 144 AMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNW 199

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
             IS     + C++    + N L +A +L + MP+    I W  +++G       ++G+L
Sbjct: 200 ELIS-----WNCLMGGYVKRNMLGDARQLFDRMPVRDV-ISWNTMISGY-----AQVGDL 248

Query: 653 AANRLLELES 662
           +  + L  ES
Sbjct: 249 SQAKRLFNES 258


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/735 (35%), Positives = 418/735 (56%), Gaps = 32/735 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN+LI         ++A  ++ +    G  PD +T   VL ACG L + + G +VH VI 
Sbjct: 190 WNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIE 249

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   +V + N L++MY + + L  AR++F +M    + D V+WNT++  YAQ G  E 
Sbjct: 250 KIGIAGDVIIGNGLLSMYFKFERLREARRVFSKM---AVKDSVTWNTMICGYAQLGRHEA 306

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            + LF  M     + G   D +S+ + + AC   G    GK        K +       D
Sbjct: 307 SVKLFMDM-----IDGFVPDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFECD 356

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            V+ N ++  Y++ G    A  +F   + ++     VTW+++I GY Q G+  E L+ F+
Sbjct: 357 TVACNILIDMYAKCGDLLAAQEVFDTTKCKDS----VTWNSLINGYTQSGYYKEGLESFK 412

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+    +P+ VT V LLS  + +  +  G+  HC  IK     +      L++ N+L+D
Sbjct: 413 MMKM-ERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAE------LIIGNSLLD 465

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YAKC  +D    +F  ++    D+ +W  +I S            +  +M  +  +  P
Sbjct: 466 VYAKCGEMDDLLKVFSYMSA--HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLM--P 521

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +  T+   L  C+ LA  R G++IH Y+ ++ +E  +P + N LI+MYS+ G ++    V
Sbjct: 522 DEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP-IGNALIEMYSKCGSLENCIKV 580

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  +K+++VV+WT+L++ +GM+G G KA  AF  M   G+ PD V F+  ++ACSHSGMV
Sbjct: 581 FKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMV 640

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +GL++FD M  ++ +  R EHYAC+VDLL R+  L +A E I  MPM+P   +W ALL+
Sbjct: 641 KEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLS 700

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR   N  + +  + ++LEL S+  G Y L+SNIYA  G+W  V  +R+ MK  G+KK 
Sbjct: 701 ACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG SW++ ++    F  GD++  Q  K+ ++L  LV+ +   GYV    FALHDV++++K
Sbjct: 761 PGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDK 820

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
            D+L  HSE+LA+A+G+L T PG+P+ + KNLR+CGDCH+   +I+ I+  EI++RD+NR
Sbjct: 821 RDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANR 880

Query: 820 FHHFKEGSCTCKGYW 834
           FH FK+G+C+C  +W
Sbjct: 881 FHRFKDGACSCGDHW 895



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 183/687 (26%), Positives = 310/687 (45%), Gaps = 92/687 (13%)

Query: 40  TSLL--LRQCKSLTQVYLIHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSPALSLLQRISP 95
           +SLL  L   K+  Q+  +H  II    +L+ +    LI+ Y     P  ++S+ + ISP
Sbjct: 23  SSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISP 82

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           +  +V+ WN++IR      L   A   + +M  +   PD +TFP V+ +C  +     G 
Sbjct: 83  TN-NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH      GF+S++++ NAL+ MY+R   L  AR +F+EM      D VSWN++++ Y 
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR---DSVSWNSLISGYC 198

Query: 216 QSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACASLGTWSRG-------KQCGM-- 264
            +G  E  L ++   RMTG V    D  ++ + L AC SL     G       ++ G+  
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVP---DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 265 -----------------MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                            + EA++VF +M VKD V+WN M+ GY+++G  E +  LF  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
                                                G  P+++++ S +  C   G L 
Sbjct: 316 D------------------------------------GFVPDMLSITSTIRACGQSGDLQ 339

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           +GK  H Y I            D +  N LIDMYAKC  +  A+ +FD    K +D  TW
Sbjct: 340 VGKFVHKYLIGSGFEC------DTVACNILIDMYAKCGDLLAAQEVFD--TTKCKDSVTW 391

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             +I  Y+Q+G   + L  F  M  +    KP++ T    L   ++LA +  GR IH  V
Sbjct: 392 NSLINGYTQSGYYKEGLESFKMMKMER---KPDSVTFVLLLSIFSQLADINQGRGIHCDV 448

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           ++  +E  +  + N L+D+Y++ G++D    VF  +   +++SW +++            
Sbjct: 449 IKFGFEAEL-IIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
               ++MR EGL PD  T L +L  CS   +  QG +    + K  G  +       +++
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIE 566

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           +  +   L+  +++ + M  E   + W AL++   ++   +   L A + +EL      S
Sbjct: 567 MYSKCGSLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKA-LKAFQDMELSGVLPDS 624

Query: 668 YTLLSNIYA--NAGRWKDVARIRSLMK 692
              ++ I+A  ++G  K+  R    MK
Sbjct: 625 VAFIAFIFACSHSGMVKEGLRFFDRMK 651


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/729 (37%), Positives = 418/729 (57%), Gaps = 61/729 (8%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM---AMYARCDTLSYARQLFDEMF 197
           +L  C  L S R    +HA +  +G  +  +  + L+    +    D L YA  +F+ + 
Sbjct: 8   LLHNCKTLQSLRM---IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P   +++ WNT+   +A S D    L L+  M   + +  +  +    L +CA    + 
Sbjct: 65  EP---NLLIWNTMFRGHALSSDPVSALYLYVCMIS-LGLLPNCYTFPFLLKSCAKSKAFR 120

Query: 258 RGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G +E+A+KVF++   +DVVS+ A++TGY+
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G    A    +KM  E    +VV+W+A+I+GYA+ G+  EAL++F++M    + P+  
Sbjct: 181 SKGYIASA----QKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDES 236

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+VS++S CA   ++ LG++ H +        D     +L ++NALID+Y KC  V+ A 
Sbjct: 237 TMVSVVSACAQSASIELGRQVHSWI------DDHGFGSNLKIVNALIDLYIKCGEVETAC 290

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F+ ++ K  DV +W  +IG Y+      +AL LF +M +  +   PN  T+   L AC
Sbjct: 291 GLFEGLSYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--SPNDVTMLSILPAC 346

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANC------LIDMYSRSGDIDTARVVFDNLKQ 525
           A L A+  GR IH Y+ +      +  VAN       LIDMY++ GDI+ A+ VFD++  
Sbjct: 347 AHLGAIEIGRWIHVYINKR-----LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN 401

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R++ SW +++ G+ MHG  + A   F +MRK  + PD +TF+ LL ACSHSGM+D G   
Sbjct: 402 RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 461

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F SM +++ I+ + EHY C++DLLG +    EA E+I  M MEP  +IW +LL  C+++A
Sbjct: 462 FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYA 521

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           NVELGE  A  L+++E +  GSY LLSNIYA AGRW +VA+IR+L+   G+KK PGCS +
Sbjct: 522 NVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSI 581

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +       F +GD+ HP++++IY +L  +   ++  G+VP TS  L ++++E K   L  
Sbjct: 582 EIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRH 641

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+G+++T PGT + I KNLR+C +CH A   IS I   EII RD  RFHHF++
Sbjct: 642 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 701

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 702 GVCSCNDYW 710



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 163/597 (27%), Positives = 278/597 (46%), Gaps = 115/597 (19%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYV--SHNAPSP-ALSLLQRISPSP 97
           LL  CK+L  + +IH Q+I   L  T+   S LI   V   H    P A+S+ + I    
Sbjct: 8   LLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEP- 66

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  WN + R       P +A  L++ M+  G  P+ YTFPF+LK+C +  + R G  +
Sbjct: 67  -NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE---------------------- 195
           H  +   G+D +++V  +L++MY +   L  AR++FD+                      
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYI 185

Query: 196 -----MF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
                MF +  I D+VSWN +++ YA++G+ +  L LF  M     V+ D  ++V+ +SA
Sbjct: 186 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM-KTNVRPDESTMVSVVSA 244

Query: 250 CASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSW 283
           CA   +   G+Q                          CG +E A  +FE +  KDV+SW
Sbjct: 245 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 304

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++ GY+ +  +++A  LF++M +                                   
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQEMLRS---------------------------------- 330

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G  PN VT++S+L  CA +GA+ +G+  H Y  KR+  V  +         +LIDMYAK
Sbjct: 331 -GESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR----TSLIDMYAK 385

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  ++ A+ +FD+I   NR +++W  MI  ++ +G AN A  +F +M + +  ++P+  T
Sbjct: 386 CGDIEAAQQVFDSIL--NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE--IEPDDIT 441

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFD 521
               L AC+    L  GR I    ++  Y+ + P + +  C+ID+   SG    A  + +
Sbjct: 442 FVGLLSACSHSGMLDLGRHIFR-SMKEDYK-ITPKLEHYGCMIDLLGHSGLFKEAEEMIN 499

Query: 522 NLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            ++ + + V W SL+    M+    LG+   +A + ++ E   P     L  +YA +
Sbjct: 500 TMEMEPDGVIWCSLLKACKMYANVELGES--YAQNLIKIEPKNPGSYVLLSNIYATA 554


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/739 (36%), Positives = 408/739 (55%), Gaps = 72/739 (9%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +  HA I  SG  ++ ++   L+A Y+  +  + A  +   +  P    I S+++++ A 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDP---TIYSFSSLIYAL 91

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------- 261
            ++      + +F+RM     +  D   L N    CA L  +  GKQ             
Sbjct: 92  TKAKLFTQSIGVFSRMFSHGLIP-DSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG M +A+KVF+RM  KDVV+ +A++  Y+R G  E+   +  +M  
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             ++ N+V+W+ +++G+ + G+  EA+ +F+++   G  P+ VT+ S+L        L +
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK---------------------CKS- 406
           G+  H Y IK+ L  D        VI+A+IDMY K                     C + 
Sbjct: 271 GRLIHGYVIKQGLLKDKC------VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAY 324

Query: 407 ---------VDVARVMFDAIAPKNRD--VATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                    VD A  MF+    +  +  V +WT +I   +QNG   +AL LF +M  Q  
Sbjct: 325 ITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM--QVA 382

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            VKPN  T+   L AC  +AAL  GR  H + +R  + +    V + LIDMY++ G I+ 
Sbjct: 383 GVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVR-VHLLDNVHVGSALIDMYAKCGRINL 441

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           +++VF+ +  +N+V W SLM G+ MHG   +    F+ + +  L PD ++F  LL AC  
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+ D+G KYF  MS+E+GI  R EHY+C+V+LLGRA +L EA +LI+ MP EP   +W 
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWG 561

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALLN CR+  NV+L E+AA +L  LE E  G+Y LLSNIYA  G W +V  IR+ M+  G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCSW+Q K    T   GD++HPQ  +I E +  + + ++  G+ P   FALHDV+
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVE 681

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           ++E+  +L+ HSEKLA+ +G+L T  GTP+++ KNLRICGDCH+ I FIS     EI +R
Sbjct: 682 EQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIR 741

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D+NRFHHFK+G C+C  +W
Sbjct: 742 DTNRFHHFKDGICSCGDFW 760



 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 144/564 (25%), Positives = 271/564 (48%), Gaps = 84/564 (14%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + LIA+Y ++N  + A  +LQ I P P +++ +++LI    + +L   +  +F +M   G
Sbjct: 54  AKLIASYSNYNCFNDADLVLQSI-PDP-TIYSFSSLIYALTKAKLFTQSIGVFSRMFSHG 111

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD +  P + K C EL + + G  +H V C SG D + FV  ++  MY RC  +  AR
Sbjct: 112 LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDAR 171

Query: 191 QLFD-------------------------------EMFQPGI-CDIVSWNTIVAAYAQSG 218
           ++FD                               EM   GI  +IVSWN I++ + +SG
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             +  +++F ++   +    D V++ + L +       + G+                  
Sbjct: 232 YHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI 290

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   + G +     +F + ++ +    NA +TG SR G  + A  +F+  +++ ++
Sbjct: 291 SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTME 350

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           LNVV+W+++IAG AQ G   EAL++FR+MQ  G++PN VT+ S+L  C ++ AL  G+ T
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H + + RV  +D  H     V +ALIDMYAKC  +++++++F+ +  KN  +  W  ++ 
Sbjct: 411 HGFAV-RVHLLDNVH-----VGSALIDMYAKCGRINLSQIVFNMMPTKN--LVCWNSLMN 462

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAYV 487
            +S +G A + +++F  + +    +KP+  + +  L AC ++         F      Y 
Sbjct: 463 GFSMHGKAKEVMSIFESLMRTR--LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG 520

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDK 546
           ++ + E       +C++++  R+G +  A  +   +  + +   W +L+    +    D 
Sbjct: 521 IKPRLEHY-----SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL 570
           A  A +++    L P+     VLL
Sbjct: 576 AEIAAEKLFH--LEPENPGTYVLL 597


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 284/789 (35%), Positives = 421/789 (53%), Gaps = 98/789 (12%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSH-NAPSPALSLLQRISPSPFSVFWWNAL 106
           KS +Q   +H Q++    + +    L+ +  SH N    +L L   I   P     W ++
Sbjct: 20  KSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPP--ALAWKSV 77

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           IR      LP  +   F+ M+  G +PD   FP VLK+C  L     G S+H  I   G 
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE-GGLM 225
           D +++  NALM M        Y++  F E                    +SG    G   
Sbjct: 138 DFDLYTGNALMNM--------YSKLRFLE--------------------ESGRQRLGAGE 169

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           +F  MT   +     V  V+ LS                 +  +K+FE M  KD+VSW  
Sbjct: 170 VFDEMTERTR----SVRTVSVLSE----------------DSVRKIFEMMPEKDLVSW-- 207

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
                                            + +IAG A+ G   E L + R+M    
Sbjct: 208 ---------------------------------NTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L+P+  TL S+L   A    +  GKE H  +I++ L  D      + V ++LIDMYAKC 
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDAD------IYVASSLIDMYAKCT 288

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V  +  +F  +    RD  +W  +I    QNG  ++ L  F QM      +KP +++ S
Sbjct: 289 RVADSCRVFTLLT--ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK--IKPKSYSFS 344

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + ACA L  L  G+Q+H Y+ RN ++  I F+A+ L+DMY++ G+I TA+ +FD ++ 
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENI-FIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R++VSWT+++ G  +HG    A   F+QM  EG+ P+ V F+ +L ACSH G+VD+  KY
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKY 463

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F+SM+++FGI+   EHYA + DLLGRA RL+EA + I GM + PT  IW  LL+ CR+H 
Sbjct: 464 FNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHX 523

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N+++ E  ANR+LE++    G+Y LL+NIY+ A RWK+ A+ R+ M+  G++K P CSW+
Sbjct: 524 NIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWI 583

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + K     F  GD +HP  +KI E +  LV+ ++  GYVP TS   HDV++E+K  L+  
Sbjct: 584 EVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCS 643

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+ +GI+ T  G  IR+TKNLR+C DCH+A  FIS I+  EI++RD++RFHHFK 
Sbjct: 644 HSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKN 703

Query: 826 GSCTCKGYW 834
           G+C+C  YW
Sbjct: 704 GTCSCGDYW 712


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/721 (37%), Positives = 400/721 (55%), Gaps = 68/721 (9%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           NVF  N+L++M+A+   L+ AR +F EM +    D VSW  +V    ++G     +    
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPER---DAVSWTVMVVGLNRAGRFGEAIKTLL 153

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            MT D        +L N LS+CA     + G++                          C
Sbjct: 154 DMTAD-GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G  E A  VFERM V+ V SWNAMV+  + +G  + A +LF+ M   ++    V+W+A+I
Sbjct: 213 GDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSI----VSWNAMI 268

Query: 323 AGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           AGY Q G   +AL +F R +    + P+  T+ S+LS CA++G + +GK+ H Y ++  +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 382 S-------------------------VDGSHPDDLMVIN--ALIDMYAKCKSVDVARVMF 414
           +                         +D S   DL VI+  AL++ Y K   ++ AR MF
Sbjct: 329 AYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             +   NRDV  WT MI  Y QNG  ++A+ LF  M       +PN++TL+  L  CA L
Sbjct: 389 GVM--NNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP--EPNSYTLAAVLSVCASL 444

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTS 533
           A L +G+QIH   +R+  E     V+N +I MY+RSG    AR +FD +  ++  ++WTS
Sbjct: 445 ACLDYGKQIHCRAIRSLLER-SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++     HG G++A   F++M + G+ PD +T++ +L ACSH+G V++G +Y+D +  E 
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 563

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            I+    HYAC+VDLL RA    EA E I  MP+EP  I W +LL+ CR+H N EL ELA
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A +LL ++    G+Y+ ++N+Y+  GRW D ARI    K   V+K  G SW   +     
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 683

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F   D  HPQ   +Y + A + + IK  G+VP     LHDVDDE K +LL  HSEKLA+A
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIA 743

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+++T   T +R+ KNLR+C DCH+AI  IS + + EII+RD+ RFHHF++G C+CK Y
Sbjct: 744 FGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDY 803

Query: 834 W 834
           W
Sbjct: 804 W 804



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/496 (29%), Positives = 240/496 (48%), Gaps = 76/496 (15%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A +  L M   G+ P ++T   VL +C    +   G  VH+ +   G  S V V N+++ 
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 179 MYARCDTLSYARQLFDEM---------------------------FQ--PGICDIVSWNT 209
           MY +C     A  +F+ M                           F+  PG   IVSWN 
Sbjct: 208 MYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGR-SIVSWNA 266

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------- 261
           ++A Y Q+G     L LF+RM  +  +  D  ++ + LSACA+LG    GKQ        
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 262 ------------------CGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFA 301
                              G +E A+++ ++    D  V+S+ A++ GY +IG  E A  
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  M       +VV W+A+I GY Q G   EA+D+FR M  CG EPN  TL ++LS CA
Sbjct: 387 MFGVMNNR----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           S+  L  GK+ HC  I+ +L    S      V NA+I MYA+  S   AR MFD +  + 
Sbjct: 443 SLACLDYGKQIHCRAIRSLLERSSS------VSNAIITMYARSGSFPWARRMFDQVCWR- 495

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           ++  TWT MI + +Q+G   +A+ LF +M +    V+P+  T    L AC+    +  G+
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAG--VEPDRITYVGVLSACSHAGFVNEGK 553

Query: 482 QIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
           + +  + +N+++ + P +++  C++D+ +R+G    A+     +  + + ++W SL++  
Sbjct: 554 RYYDQI-KNEHQ-IAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSAC 611

Query: 539 GMHGLGDKAHWAFDQM 554
            +H   + A  A +++
Sbjct: 612 RVHKNAELAELAAEKL 627



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 143/305 (46%), Gaps = 44/305 (14%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSV 157
           S+  WNA+I    +  L   A +LF +M+      PDE+T   VL AC  L + R G  V
Sbjct: 260 SIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV 319

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--------------- 202
           HA I  +    N  V NAL++ YA+  ++  AR++ D+  +  +                
Sbjct: 320 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIG 379

Query: 203 ---------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
                          D+V+W  ++  Y Q+G  +  + LF  M      + +  +L   L
Sbjct: 380 DMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI-TCGPEPNSYTLAAVL 438

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM- 306
           S CASL     GKQ       + +   ++    VS NA++T Y+R GSF  A  +F ++ 
Sbjct: 439 SVCASLACLDYGKQI----HCRAIRSLLERSSSVS-NAIITMYARSGSFPWARRMFDQVC 493

Query: 307 -RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
            R+E      +TW+++I   AQ G G EA+ +F +M   G+EP+ +T V +LS C+  G 
Sbjct: 494 WRKE-----TITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 366 LLLGK 370
           +  GK
Sbjct: 549 VNEGK 553



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 28/258 (10%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W A+I    +    D A  LF  M+  G  P+ YT   VL  C  L     G  +H 
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC---DIVSWNTIVAAYAQ 216
               S  + +  V NA++ MYAR  +  +AR++FD+     +C   + ++W +++ A AQ
Sbjct: 456 RAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQ-----VCWRKETITWTSMIVALAQ 510

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G  E  + LF  M     V+ D ++ V  LSAC+           G + E K+ ++++K
Sbjct: 511 HGQGEEAVGLFEEML-RAGVEPDRITYVGVLSACS---------HAGFVNEGKRYYDQIK 560

Query: 277 VKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            +  ++     +  MV   +R G F +A    ++M    V+ + + W ++++  A R H 
Sbjct: 561 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLS--ACRVHK 615

Query: 332 HEALDVFRQMQFCGLEPN 349
           +  L      +   ++PN
Sbjct: 616 NAELAELAAEKLLSIDPN 633



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 62/234 (26%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL------------- 456
           AR +FD I    R+V TW  ++  ++++G   DA  +F +M ++D +             
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG 143

Query: 457 ----------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
                             P  FTL+  L +CA   A   GR++H++V++      +P VA
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVP-VA 202

Query: 501 NCLIDMYSRSGDIDTARVV-------------------------------FDNLKQRNVV 529
           N +++MY + GD +TA  V                               F+++  R++V
Sbjct: 203 NSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIV 262

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDGVTFLVLLYACSHSGMVDQG 582
           SW +++ GY  +GL  KA   F +M  E  +APD  T   +L AC++ G V  G
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/574 (43%), Positives = 371/574 (64%), Gaps = 16/574 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG + +A+ +F+ +  KD+ SWN M++GY+ +G  E A  LF +M   +      +W+A
Sbjct: 110 KCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDN----FSWNA 165

Query: 321 VIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           VI+GY  +G   EALD+FR MQ       N+ TL S L+  A++ +L  GKE H Y I+ 
Sbjct: 166 VISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRS 225

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L +D       +V  AL+D+Y KC S++ AR +FD +A K  D+ +WT MI    ++G 
Sbjct: 226 GLELDE------VVWTALLDLYGKCGSLNEARGIFDQMADK--DIVSWTTMIHRCFEDGR 277

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +  +LF  +      V+PN +T +  L ACA LAA + G+++H Y+ R  Y+    F 
Sbjct: 278 KKEGFSLFRDLMGSG--VRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPF-SFA 334

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           A+ L+ +YS+ G+ +TAR VF+ + + ++VSWTSL+ GY  +G  D A   F+ + + G 
Sbjct: 335 ASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGT 394

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD +TF+ +L AC+H+G+VD GL+YF S+ ++ G+   A+HYAC++DLL R+ R  EA 
Sbjct: 395 KPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAE 454

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I+ MPM+P   +W +LL GCRIH N+EL E AA  L ELE E   +Y  LSNIYANAG
Sbjct: 455 NIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAG 514

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
            W +  ++R+ M + G+ K+PG SW++ K     F VGD +HP+   I+E L  L +++K
Sbjct: 515 LWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMK 574

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYV  T+F LHDV++E+K   +F HSEKLA+A+GI++T+PGTPI++ KNLR C DCH+
Sbjct: 575 EEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHN 634

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           A+ +IS I+  +II+RDSNRFH F +GSC+CK Y
Sbjct: 635 AMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 221/514 (42%), Gaps = 61/514 (11%)

Query: 111 VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170
           + L    N  +  +  + R   P    +  ++ AC        G  VHA   +S F   +
Sbjct: 39  IELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGI 98

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
            + N L+ MYA+C +L  A+ LFDE+ Q  +C   SWNT+++ YA  G  E    LF  M
Sbjct: 99  VISNRLIHMYAKCGSLVDAQMLFDEIPQKDLC---SWNTMISGYANVGRIEQARKLFDEM 155

Query: 231 TGDVKVQGDGVSLVNALSACASLGTW------------SRGKQCGMM------------- 265
                   D  S    +S   S G +            +    C M              
Sbjct: 156 P-----HRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAIS 210

Query: 266 -----EEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
                +E      R  ++ D V W A++  Y + GS  +A  +F +M  +    ++V+W+
Sbjct: 211 SLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK----DIVSWT 266

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
            +I    + G   E   +FR +   G+ PN  T   +L+ CA + A  +GKE H Y + R
Sbjct: 267 TMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGY-MTR 325

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
           V    G  P      +AL+ +Y+KC + + AR +F+ + P+  D+ +WT +I  Y+QNG 
Sbjct: 326 V----GYDPFSFAA-SALVHVYSKCGNTETARRVFNQM-PRP-DLVSWTSLIVGYAQNGQ 378

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
            + AL  F  + +     KP+  T    L AC     +  G +    V      +     
Sbjct: 379 PDMALQFFESLLRSG--TKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADH 436

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHWAFDQMR 555
             C+ID+ +RSG    A  + DN+  + +   W SL+ G  +HG   L ++A  A  ++ 
Sbjct: 437 YACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELE 496

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
            E  A    T++ L    +++G+  +  K  + M
Sbjct: 497 PENPA----TYITLSNIYANAGLWTEETKVRNDM 526



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 16/264 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I R          F LF  +M  G  P+EYTF  VL AC +L + + G  VH  + 
Sbjct: 265 WTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMT 324

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D   F  +AL+ +Y++C     AR++F++M +P   D+VSW +++  YAQ+G  + 
Sbjct: 325 RVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRP---DLVSWTSLIVGYAQNGQPDM 381

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L  F  +      + D ++ V  LSAC   G    G     +E    V E+  +     
Sbjct: 382 ALQFFESLLRS-GTKPDEITFVGVLSACTHAGLVDIG-----LEYFHSVKEKHGLVHTAD 435

Query: 283 WNAMVTG-YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             A V    +R G F++A  +   M    +K +   W++++ G   R HG+  L      
Sbjct: 436 HYACVIDLLARSGRFKEAENIIDNM---PMKPDKFLWASLLGGC--RIHGNIELAERAAK 490

Query: 342 QFCGLEP-NVVTLVSLLSGCASVG 364
               LEP N  T ++L +  A+ G
Sbjct: 491 ALFELEPENPATYITLSNIYANAG 514



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 40/148 (27%)

Query: 591 KEFGISARAEH--YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           K+  +S  +EH  +  I++L  + NRL EAV+ +  +P +P+P ++  L+  C  H  +E
Sbjct: 22  KDTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIP-QPSPRLYSTLIAACLRHRKLE 80

Query: 649 LGE---------------LAANRLLELES----------------EKD-GSYTLLSNIYA 676
           LG+               + +NRL+ + +                +KD  S+  + + YA
Sbjct: 81  LGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYA 140

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSW 704
           N GR +   ++   M H     R   SW
Sbjct: 141 NVGRIEQARKLFDEMPH-----RDNFSW 163


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 292/752 (38%), Positives = 422/752 (56%), Gaps = 34/752 (4%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNA---FRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
           PSP  V  +N LIR A     P  A     L+ +M+R    P+ YTFPF LKAC  L   
Sbjct: 84  PSP-DVRTYNDLIR-AYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADH 141

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
            CG ++H     +G  +++FV  AL+ MY +C  L  A  +F  M  P   D+V+WN ++
Sbjct: 142 HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM--PAR-DLVAWNAML 198

Query: 212 AAYAQSGDAEGGLMLFARMTGDV-KVQGDGVSLVNALSACASLGTWSRGKQ----CGMME 266
           A YA  G     +     M   + +++ +  +LV  L   A  G  ++G      C    
Sbjct: 199 AGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRAC 258

Query: 267 EAKKVFERMKVKD-VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                  + K+ D V+   A++  Y++ GS   A  +F  M   N     VTWSA+I G+
Sbjct: 259 LHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE----VTWSALIGGF 314

Query: 326 AQRGHGHEALDVFRQM---QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                  +A  +F+ M     C L P   ++ S L  CAS+  L +G++ H      +L+
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHA-----LLA 367

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
             G H D L   N+L+ MYAK   +D A  +FD +A K  D  +++ ++  Y QNG A +
Sbjct: 368 KSGVHAD-LTAGNSLLSMYAKAGLIDQAIALFDEMAVK--DTVSYSALVSGYVQNGRAEE 424

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A  +F +M  Q   V+P+A T+   + AC+ LAAL+ GR  H  V+          + N 
Sbjct: 425 AFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS-ICNA 481

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LIDMY++ G ID +R VF+ +  R++VSW +++ GYG+HGLG +A   F +M   G  PD
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPD 541

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
           GVTF+ LL ACSHSG+V +G  +F  M   +G++ R EHY C+VDLL R   LDEA E I
Sbjct: 542 GVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFI 601

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + MP+     +WVALL  CR++ N++LG+  +  + EL  E  G++ LLSNIY+ AGR+ 
Sbjct: 602 QSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFD 661

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           + A +R + K  G KK PGCSW++       F  GD++HPQS +IY  L  ++  IK +G
Sbjct: 662 EAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLG 721

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y P TSF L D+++EEK   L  HSEKLA+AYGIL+ +    I +TKNLR+CGDCH+ I 
Sbjct: 722 YQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIK 781

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS++    II+RD+NRFHHFK G C+C  +W
Sbjct: 782 HISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/654 (40%), Positives = 379/654 (57%), Gaps = 46/654 (7%)

Query: 184 DTLSYARQL---FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240
           +T +Y R+L    D    P +    S  ++    A+ G    G  +   +  DV V    
Sbjct: 95  NTYTYMRKLDIEVDSFIIPSVLKACSQISV----ARMGKEIHGFSVKNGLVSDVFV---- 146

Query: 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAF 300
              VNAL    S        +CG +  A+ +F++M  +DVVSW+ M+  Y          
Sbjct: 147 ---VNALMQMYS--------ECGSLVSARLLFDKMSERDVVSWSTMIRAY---------I 186

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            LF    Q ++    V+W+A+IAGY +     E   +F +M    + PN +T++SL+  C
Sbjct: 187 TLFYGFSQRSI----VSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISC 242

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
             VGA+ LGK  H Y ++    +       L +  AL+DMY KC  +  AR +FD++  K
Sbjct: 243 GFVGAVQLGKRLHAYILRNGFGMS------LALATALVDMYGKCGEIRSARAIFDSM--K 294

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           N+DV TWT MI +Y+Q    + A  LF QM  +D  V+PN  T+   L  CA   AL  G
Sbjct: 295 NKDVMTWTAMISAYAQANCIDYAFQLFVQM--RDNGVRPNELTMVSLLSLCAVNGALDMG 352

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +  HAY+ +   E+ +  +   LIDMY++ GDI  A+ +F     R++ +W  +M GYGM
Sbjct: 353 KWFHAYIDKQGVEVDV-ILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGM 411

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG G+KA   F +M   G+ P+ +TF+  L+ACSH+G+V +G   F+ M  +FG+  + E
Sbjct: 412 HGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVE 471

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HY C+VDLLGRA  LDEA ++IE MP+ P   IW A+L  C+IH N  +GELAA  LL L
Sbjct: 472 HYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLAL 531

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           E +  G   L+SNIYA A RW DVA +R  +K TG+KK PG S ++       F +GD  
Sbjct: 532 EPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTA 591

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP  +KI E+LA + +++K  GY+P TS  LH++D+EEK   L  HSEKLA+A+G+++TA
Sbjct: 592 HPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTA 651

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           PGTPIR+ KNLRIC DCH+    +S I    II+RD NRFHHF+EGSC+C GYW
Sbjct: 652 PGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 237/529 (44%), Gaps = 114/529 (21%)

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
           Q++S SPF                 P  A   +  M +     D +  P VLKAC ++  
Sbjct: 79  QQVSFSPFESH--------------PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISV 124

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------- 202
           +R G  +H     +G  S+VFV NALM MY+ C +L  AR LFD+M +  +         
Sbjct: 125 ARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRA 184

Query: 203 -----------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
                       IVSW  ++A Y +  D E G  LF RM  +  V  + +++++ + +C 
Sbjct: 185 YITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEE-NVFPNDITMLSLIISCG 243

Query: 252 SLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNA 285
            +G    GK                          +CG +  A+ +F+ MK KDV++W A
Sbjct: 244 FVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTA 303

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           M++ Y++    + AF LF +MR                                     G
Sbjct: 304 MISAYAQANCIDYAFQLFVQMRDN-----------------------------------G 328

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + PN +T+VSLLS CA  GAL +GK  H Y  K+ + V      D+++  ALIDMYAKC 
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV------DVILKTALIDMYAKCG 382

Query: 406 SVDVARVMF-DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            +  A+ +F +AI   +RD+ TW VM+  Y  +G    AL LF +M  +   VKPN  T 
Sbjct: 383 DISGAQRLFSEAI---DRDICTWNVMMAGYGMHGYGEKALKLFTEM--ETLGVKPNDITF 437

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDN 522
             AL AC+    +  G+ +   ++ +    L+P V +  C++D+  R+G +D A  + ++
Sbjct: 438 IGALHACSHAGLVVEGKGLFEKMIHDF--GLVPKVEHYGCMVDLLGRAGLLDEAYKMIES 495

Query: 523 LK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +    N+  W +++    +H   +    A  ++    L P    + VL+
Sbjct: 496 MPVTPNIAIWGAMLAACKIHKNSNMGELAARELL--ALEPQNCGYKVLM 542



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 34/355 (9%)

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
             H   AL+ +  M+   +E +   + S+L  C+ +    +GKE H +++K  L      
Sbjct: 87  ESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLV----- 141

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------------RDVATW 427
             D+ V+NAL+ MY++C S+  AR++FD ++ ++                    R + +W
Sbjct: 142 -SDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSW 200

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T MI  Y +     +   LF +M +++  V PN  T+   +++C  + A++ G+++HAY+
Sbjct: 201 TAMIAGYIRCNDLEEGERLFVRMIEEN--VFPNDITMLSLIISCGFVGAVQLGKRLHAYI 258

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           LRN + M +  +A  L+DMY + G+I +AR +FD++K ++V++WT++++ Y      D A
Sbjct: 259 LRNGFGMSLA-LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYA 317

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F QMR  G+ P+ +T + LL  C+ +G +D G K+F +   + G+         ++D
Sbjct: 318 FQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALID 376

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           +  +   +  A  L     ++     W  ++ G  +H     GE A     E+E+
Sbjct: 377 MYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMHG---YGEKALKLFTEMET 427


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/759 (36%), Positives = 420/759 (55%), Gaps = 61/759 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I   V +     A+ +F  M+  G  P++     VL A   L       S+H ++ 
Sbjct: 191 WTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVH 250

Query: 163 SSGFDSNVFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            +GF+ +V V  A++  Y +  + L  A + F+ M      +  +W+TI+AA +Q+G  +
Sbjct: 251 KTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGM---AARNEYTWSTIIAALSQAGRID 307

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
               ++ R    +K      S++  L+            + G +++AK +F+++   +VV
Sbjct: 308 DAFAVYQR--DPLKSVPSRTSMLTGLA------------RYGRIDDAKILFDQIHEPNVV 353

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWNAM+TGY +    ++A  LF +M   N     ++W+ +IAGYA+ G   +AL   + +
Sbjct: 354 SWNAMITGYMQNEMVDEAEDLFNRMPFRNT----ISWAGMIAGYARNGRSEQALVSLQAL 409

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+ P++ +L S    C+++ AL  GK+ H   +K     +        V NALI +Y
Sbjct: 410 HRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNS------YVCNALITLY 463

Query: 402 AKCKSVDVARVMFDAIAPKNR-----------------------------DVATWTVMIG 432
            K +S+   R +FD +  K+                              DV +WT +I 
Sbjct: 464 GKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIIS 523

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           + +Q    N+A+ +F  M  + +L  PN   L+  L     L A + G+QIH   ++   
Sbjct: 524 ACAQADQGNEAVEIFRSMLHEREL--PNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGM 581

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +  +  VAN L+ MY +    D+ +V FD++++R++ +W +++TGY  HGLG +A   + 
Sbjct: 582 DSGL-VVANALVSMYFKCSSADSLKV-FDSMEERDIFTWNTIITGYAQHGLGREAIRMYQ 639

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M   G+ P+ VTF+ LL+ACSHSG+VD+G ++F SMS ++G++   EHYAC+VDLLGRA
Sbjct: 640 LMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRA 699

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             +  A   I  MP+EP  +IW ALL  C+IH NVE+G  AA +L  +E    G+Y +LS
Sbjct: 700 GDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLS 759

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIY++ G W +VA++R LMK  GV K PGCSW+Q K    +F  GD  H Q Q IY  L 
Sbjct: 760 NIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLW 819

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   +KA GYVP T F LHD+D+E+K   L  HSEKLA+AYG+L T  G PI+I KNLR
Sbjct: 820 ELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLR 879

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           ICGDCH+ I F+S +   EI +RD NRFHHF+ GSC+C+
Sbjct: 880 ICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSCE 918



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 238/556 (42%), Gaps = 92/556 (16%)

Query: 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-------- 232
            R   L  AR++FD M      DI++WN+++ AY  +G  + G  L   ++G        
Sbjct: 44  GRLGRLHEAREVFDSM---PFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTI 100

Query: 233 ------------DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
                       D +   DG+ + N ++  A +  +    Q G +  A+K+F+ M  +DV
Sbjct: 101 LLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYV---QNGDITLARKLFDAMPSRDV 157

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
            SWN M+TGY      E+A  LF++M +     N V+W+ +I+GY        A D+FR 
Sbjct: 158 SSWNTMLTGYCHSQLMEEARNLFERMPER----NGVSWTVMISGYVLIEQHGRAWDMFRT 213

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   G+ P    LVS+LS    +G   + +  H      VL        D++V  A+++ 
Sbjct: 214 MLCEGMTPEQPNLVSVLSAVRHLGKPGILESIH------VLVHKTGFERDVVVGTAILNG 267

Query: 401 YAK-CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           Y K    +D A   F+ +A +N    TW+ +I + SQ G  +DA A+    +Q+D L   
Sbjct: 268 YTKDVNMLDSAVKFFEGMAARNE--YTWSTIIAALSQAGRIDDAFAV----YQRDPLKSV 321

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            + T     +A       R+GR   A +L +Q         N +I  Y ++  +D A  +
Sbjct: 322 PSRTSMLTGLA-------RYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDL 374

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----- 574
           F+ +  RN +SW  ++ GY  +G  ++A  +   + ++G+ P   +     +ACS     
Sbjct: 375 FNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEAL 434

Query: 575 ------HSGMVDQGLKY------------------------FDSMSKEFGISARAEHYAC 604
                 HS  V  G ++                        FD M+ +  +S     Y  
Sbjct: 435 ETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS-----YNS 489

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC-RIHANVELGELAANRLLELESE 663
            +  L + N  DEA ++   MP  P  + W  +++ C +     E  E+  + L E E  
Sbjct: 490 FMSALVQNNLFDEARDVFNNMP-SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELP 548

Query: 664 KDGSYTLLSNIYANAG 679
                T+L  +  N G
Sbjct: 549 NPPILTILLGLSGNLG 564



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 142/369 (38%), Gaps = 60/369 (16%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQF-------------C--GLEPNVVTLVSLLSGCA-S 362
           SA I    + G  HEA +VF  M F             C  G+     +L   +SG    
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 363 VGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            G +LL        ++    V DG    + +  NA++  Y +   + +AR +FDA+   +
Sbjct: 97  TGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMP--S 154

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL------------------------- 456
           RDV++W  M+  Y  +    +A  LF +M +++ +                         
Sbjct: 155 RDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTM 214

Query: 457 ----VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
               + P    L   L A   L        IH  V +  +E  +  V   +++ Y++  +
Sbjct: 215 LCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDV-VVGTAILNGYTKDVN 273

Query: 513 -IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            +D+A   F+ +  RN  +W++++      G  D A +A  Q       P   + L  L 
Sbjct: 274 MLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDA-FAVYQRDPLKSVPSRTSMLTGL- 331

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
             +  G +D     FD + +   +S     +  ++    +   +DEA +L   MP   T 
Sbjct: 332 --ARYGRIDDAKILFDQIHEPNVVS-----WNAMITGYMQNEMVDEAEDLFNRMPFRNT- 383

Query: 632 IIWVALLNG 640
           I W  ++ G
Sbjct: 384 ISWAGMIAG 392


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/713 (37%), Positives = 411/713 (57%), Gaps = 58/713 (8%)

Query: 157 VHAVICSSGFDSNVFVCNALM---AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           +HA +  +G  +  +  + L+    +    D L YA  +F+ + +P   +++ WNT+   
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEP---NLLIWNTMFRG 62

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------- 262
           +A S D    L L+  M   + +  +  +    L +CA    +  G+Q            
Sbjct: 63  HALSSDPVSALYLYVCMIS-LGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 263 ---------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                          G +E+A+KVF++   +DVVS+ A++TGY+  G    A    +KM 
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA----QKMF 177

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            E    +VV+W+A+I+GYA+ G+  EAL++F++M    + P+  T+VS++S CA   ++ 
Sbjct: 178 DEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 237

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG++ H +        D     +L ++NALID+Y KC  V+ A  +F+ ++ K  DV +W
Sbjct: 238 LGRQVHSWI------DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK--DVISW 289

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             +IG Y+      +AL LF +M +  +   PN  T+   L ACA L A+  GR IH Y+
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGE--SPNDVTMLSILPACAHLGAIEIGRWIHVYI 347

Query: 488 LRNQYEMLIPFVANC------LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            +      +  VAN       LIDMY++ GDI+ A+ VFD++  R++ SW +++ G+ MH
Sbjct: 348 NKR-----LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 402

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G  + A   F +MRK  + PD +TF+ LL ACSHSGM+D G   F SM +++ I+ + EH
Sbjct: 403 GRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEH 462

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           Y C++DLLG +    EA E+I  M MEP  +IW +LL  C++H NVELGE  A  L+++E
Sbjct: 463 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIE 522

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            +  GSY LLSNIYA AGRW +VA+IR+L+   G+KK PGCS ++       F +GD+ H
Sbjct: 523 PKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 582

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P++++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKLA+A+G+++T P
Sbjct: 583 PRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 642

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GT + I KNLR+C +CH A   IS I   EII RD  RFHHF++G C+C  YW
Sbjct: 643 GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 160/589 (27%), Positives = 274/589 (46%), Gaps = 115/589 (19%)

Query: 51  TQVYLIHQQIIVQNL--THVPPSHLIAAYV--SHNAPSP-ALSLLQRISPSPFSVFWWNA 105
           + + +IH Q+I   L  T+   S LI   V   H    P A+S+ + I     ++  WN 
Sbjct: 1   SSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEP--NLLIWNT 58

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           + R       P +A  L++ M+  G  P+ YTFPF+LK+C +  + R G  +H  +   G
Sbjct: 59  MFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLG 118

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDE---------------------------MF- 197
           +D +++V  +L++MY +   L  AR++FD+                           MF 
Sbjct: 119 YDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFD 178

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +  I D+VSWN +++ YA++G+ +  L LF  M     V+ D  ++V+ +SACA   +  
Sbjct: 179 EIPIKDVVSWNAMISGYAETGNNKEALELFKEMM-KTNVRPDESTMVSVVSACAQSASIE 237

Query: 258 RGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                          CG +E A  +FE +  KDV+SWN ++ GY+
Sbjct: 238 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
            +  +++A  LF++M +                                    G  PN V
Sbjct: 298 HMNLYKEALLLFQEMLRS-----------------------------------GESPNDV 322

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T++S+L  CA +GA+ +G+  H Y  KR+  V  +         +LIDMYAKC  ++ A+
Sbjct: 323 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR----TSLIDMYAKCGDIEAAQ 378

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +FD+I   NR +++W  MI  ++ +G AN A  +F +M + +  ++P+  T    L AC
Sbjct: 379 QVFDSIL--NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE--IEPDDITFVGLLSAC 434

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNV 528
           +    L  GR I    ++  Y+ + P + +  C+ID+   SG    A  + + ++ + + 
Sbjct: 435 SHSGMLDLGRHIFR-SMKEDYK-ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG 492

Query: 529 VSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           V W SL+    MHG   LG+   +A + ++ E   P     L  +YA +
Sbjct: 493 VIWCSLLKACKMHGNVELGES--YAQNLIKIEPKNPGSYVLLSNIYATA 539


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/698 (38%), Positives = 404/698 (57%), Gaps = 56/698 (8%)

Query: 174 NALMAMYARCDTLSYARQLF------DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           NA+++ +AR    + A  +F      D+  +P   D  S+ ++++A  Q  D    +   
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRP---DDYSFTSLLSAVGQMHDL--AVSHC 180

Query: 228 ARMTGDVKVQGDG--VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
            ++   V   G G  +S+ NAL     +  + +    G+  +A+KV + M  KD ++W  
Sbjct: 181 TQLHCAVHKLGAGAVLSVSNAL-----IALYMKCDAPGVTRDARKVLDEMPEKDELTWTT 235

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V G+ R G    A + F+++  E    +VV W+A+I+GY Q G   EA ++FR+M    
Sbjct: 236 IVVGHVRKGDVHAARSAFEEIDGE---FDVV-WNAMISGYVQSGMCAEAFELFRRMVSKR 291

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + P+  T  SLLS CA+ G  L GK  H   I+  L  D      L V NAL+ +Y+K  
Sbjct: 292 IPPDEFTFTSLLSACANAGFFLHGKSVHGQFIR--LQPDFVPEAALPVNNALVTLYSKSG 349

Query: 406 SVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQ 436
            + VA  +FD++  K+                             +   +W VM+  Y  
Sbjct: 350 KIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVH 409

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G A DAL LF QM  +D  VKP  +T + A+ AC  L AL+ G+Q+HA++++  +E   
Sbjct: 410 GGLAEDALKLFNQMRSED--VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASN 467

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
               N L+ MY+R G +  AR+VF  +   + VSW ++++  G HG G +A   FDQM  
Sbjct: 468 S-AGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVA 526

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
           +G+ PD ++FL +L AC+H+G+VD G +YF+SM ++FGIS   +HYA ++DLLGRA R+ 
Sbjct: 527 QGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIG 586

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           EA +LI+ MP EPTP IW A+L+GCRI+ ++ELG  AA++L ++  E DG+Y LLSN Y+
Sbjct: 587 EARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYS 646

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
            AGRW D AR+R LM+  GVKK PGCSW++       F VGD  HP + ++Y  L  +  
Sbjct: 647 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGA 706

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           +++ +GYVP T FAL D+   EK  +LF HSE+LA+++G+L    G  + + KNL+ICGD
Sbjct: 707 KMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGD 766

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CH+A+ F+S  +  EI++RD  RFHHFK+G C+C  YW
Sbjct: 767 CHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 245/560 (43%), Gaps = 97/560 (17%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRR--GWHPDEYTFPFVLKACGE---LPSSRCGSSVH 158
           NA+I    R  L   A  +F  ++       PD+Y+F  +L A G+   L  S C + +H
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHC-TQLH 184

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSY---ARQLFDEMFQP---------------- 199
             +   G  + + V NAL+A+Y +CD       AR++ DEM +                 
Sbjct: 185 CAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKG 244

Query: 200 -------------GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
                        G  D+V WN +++ Y QSG       LF RM    ++  D  +  + 
Sbjct: 245 DVHAARSAFEEIDGEFDVV-WNAMISGYVQSGMCAEAFELFRRMVSK-RIPPDEFTFTSL 302

Query: 247 LSACASLGTWSRGK------------------------------QCGMMEEAKKVFERMK 276
           LSACA+ G +  GK                              + G +  A K+F+ M 
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           +KDVVSWN +++GY   G  ++A  +FK+M  +    + ++W  +++GY   G   +AL 
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEMPYK----SELSWMVMVSGYVHGGLAEDALK 418

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F QM+   ++P   T    ++ C  +GAL  GK+ H + ++       S        NA
Sbjct: 419 LFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNS------AGNA 472

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+ MYA+C +V  AR++F  +   N D  +W  MI +  Q+G   +AL LF QM  Q   
Sbjct: 473 LLTMYARCGAVKDARLVF--LVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQG-- 528

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           + P+  +    L AC     +  G Q    + R+            LID+  R+G I  A
Sbjct: 529 IYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEA 588

Query: 517 RVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           R +   +  +     W ++++G  ++G  +   +A DQ+ K     DG T+++L    S 
Sbjct: 589 RDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDG-TYILLSNTYSA 647

Query: 576 SG-----------MVDQGLK 584
           +G           M D+G+K
Sbjct: 648 AGRWVDAARVRKLMRDRGVK 667



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 179/397 (45%), Gaps = 70/397 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   V+  +   AF LF +M+ +   PDE+TF  +L AC        G SVH    
Sbjct: 264 WNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFI 323

Query: 163 SSGFD----SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
               D    + + V NAL+ +Y++   ++ A ++FD M    + D+VSWNTI++ Y +SG
Sbjct: 324 RLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSM---TLKDVVSWNTILSGYIESG 380

Query: 219 DAEGGLMLFARMTGD------VKVQG--------DGVSLVN----------------ALS 248
             +    +F  M         V V G        D + L N                A++
Sbjct: 381 CLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVA 440

Query: 249 ACASLGTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           AC  LG    GK       QCG   EA             + NA++T Y+R G+ +DA  
Sbjct: 441 ACGELGALKHGKQLHAHLVQCGF--EASN----------SAGNALLTMYARCGAVKDARL 488

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  M      ++ V+W+A+I+   Q GHG EAL++F QM   G+ P+ ++ +++L+ C 
Sbjct: 489 VFLVMPN----VDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACN 544

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
             G +  G + +  +++R   +  S  +D      LID+  +   +  AR +   + P  
Sbjct: 545 HAGLVDDGFQ-YFESMERDFGI--SPGEDHYA--RLIDLLGRAGRIGEARDLIKTM-PFE 598

Query: 422 RDVATWTVMIGSYSQNG----GANDALALFPQMFQQD 454
              A W  ++     NG    GA  A  LF  + + D
Sbjct: 599 PTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHD 635



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 144/344 (41%), Gaps = 48/344 (13%)

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L+  YA    +  +   FD++    RD      MI ++++   A  A+++F  +   D
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 455 KLVKPNAFTLSCALMACARLAALRFGR--QIHAYVLRNQYEMLIPFVANCLIDMY----- 507
             ++P+ ++ +  L A  ++  L      Q+H  V +     ++  V+N LI +Y     
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLS-VSNALIALYMKCDA 211

Query: 508 -----------------------------SRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
                                         R GD+  AR  F+ +     V W ++++GY
Sbjct: 212 PGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGY 271

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY---FDSMSKEFGI 595
              G+  +A   F +M  + + PD  TF  LL AC+++G    G      F  +  +F  
Sbjct: 272 VQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVP 331

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL--A 653
            A       +V L  ++ ++  A ++ + M ++   + W  +L+G      +E G L  A
Sbjct: 332 EAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDV-VSWNTILSG-----YIESGCLDNA 385

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           A    E+  + + S+ ++ + Y + G  +D  ++ + M+   VK
Sbjct: 386 ARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVK 429


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 289/752 (38%), Positives = 420/752 (55%), Gaps = 34/752 (4%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNA---FRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
           PSP  V  +N LIR A     P  A     L+ +M+R    P+ YTFPF LKAC  L   
Sbjct: 84  PSP-DVRTYNDLIR-AYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADH 141

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
            CG ++H     +G  +++FV  AL+ MY +C  L  A  +F  M  P   D+V+WN ++
Sbjct: 142 HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM--PAR-DLVAWNAML 198

Query: 212 AAYAQSGDAEGGLMLFARMTGDV-KVQGDGVSLVNALSACASLGTWSRGKQCGMME---- 266
           A YA  G     +     M   + +++ +  +LV  L   A  G  ++G           
Sbjct: 199 AGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRAC 258

Query: 267 -EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
             + +  +      V+   A++  Y++ GS   A  +F  M   N     VTWSA+I G+
Sbjct: 259 LHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE----VTWSALIGGF 314

Query: 326 AQRGHGHEALDVFRQM---QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                  +A  +F+ M     C L P   ++ S L  CAS+  L +G++ H      +L+
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHA-----LLA 367

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
             G H D L   N+L+ MYAK   +D A  +FD +A K  D  +++ ++  Y QNG A +
Sbjct: 368 KSGVHAD-LTAGNSLLSMYAKAGLIDQAIALFDEMAVK--DTVSYSALVSGYVQNGRAEE 424

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A  +F +M  Q   V+P+A T+   + AC+ LAAL+ GR  H  V+          + N 
Sbjct: 425 AFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS-ICNA 481

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LIDMY++ G ID +R VF+ +  R++VSW +++ GYG+HGLG +A   F +M   G  PD
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPD 541

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
           GVTF+ LL ACSHSG+V +G  +F  M   +G++ R EHY C+VDLL R   LDEA E I
Sbjct: 542 GVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFI 601

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + MP+     +WVALL  CR++ N++LG+  +  + EL  E  G++ LLSNIY+ AGR+ 
Sbjct: 602 QSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFD 661

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           + A +R + K  G KK PGCSW++       F  GD++HPQS +IY  L  ++  IK +G
Sbjct: 662 EAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLG 721

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y P TSF L D+++EEK   L  HSEKLA+AYGIL+ +    I +TKNLR+CGDCH+ I 
Sbjct: 722 YQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIK 781

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS++    II+RD+NRFHHFK G C+C  +W
Sbjct: 782 HISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/720 (36%), Positives = 415/720 (57%), Gaps = 51/720 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM---AMYARCDTLSYARQLFDEMF 197
           +L  C  L S R    +HA +  +G  +  +  + L+    +    D L+YA  +FD + 
Sbjct: 8   LLHNCKTLQSLRI---IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQ 64

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P   +++ WNT+   +A S D    L L+  M   + +  +  +    L ACA    + 
Sbjct: 65  EP---NLLIWNTMFRGHALSSDPVSALYLYVCMIS-LGLVPNSYTFPFLLKACAKSKAFR 120

Query: 258 RGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G  E+A+KVF++   +DVVS+ A++ GY+
Sbjct: 121 EGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYA 180

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G    A    +KM  E    +VV+W+A+I+GYA+ G+  EAL++F++M    ++P+  
Sbjct: 181 SNGYIXSA----QKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDES 236

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+V++LS CA   ++ LG++ H +        D     +L ++NALID+Y KC  V+ A 
Sbjct: 237 TMVTVLSACAQSASIELGRQVHSWI------DDHGFGSNLKIVNALIDLYIKCGEVETAS 290

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F+ ++ K  DV +W  +IG Y+      +AL LF +M +  +   PN  T+   L AC
Sbjct: 291 GLFEGLSYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--SPNEVTMLSILPAC 346

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPF-VANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           A L A+  GR IH Y+ +    +  P  +   LIDMY++ GDI+ A+ VFD++  R++ S
Sbjct: 347 AHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS 406

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++ G+ MHG  + A   F +MRK+G+ PD +TF+ LL ACSHSGM+D G   F SM+
Sbjct: 407 WNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 466

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +++ I+ + EHY C++DLLG +    EA E+I  M M+P  +IW +LL  C++H NVELG
Sbjct: 467 EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELG 526

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E  A  L+++E +  GSY LLSNIYA AGRW +VA+ R+L+   G+KK PGCS ++    
Sbjct: 527 ESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSV 586

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F +GD+ HP++++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKL
Sbjct: 587 VHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 646

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G+++T PGT + I KNLR+C +CH A   IS I   EII RD  RFHHF +G C+C
Sbjct: 647 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/566 (27%), Positives = 262/566 (46%), Gaps = 118/566 (20%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP-------ALSLLQRISP 95
           LL  CK+L  + +IH ++I   L +   ++ ++  +  +  SP       A+S+   I  
Sbjct: 8   LLHNCKTLQSLRIIHAKMIKTGLHNT--NYALSKLIEFSVLSPHFDGLTYAISVFDSIQE 65

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
              ++  WN + R       P +A  L++ M+  G  P+ YTFPF+LKAC +  + R G 
Sbjct: 66  P--NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE-------------------- 195
            +H  +   G D +++V  +L+AMY +      AR++FD+                    
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 196 -------MF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
                  MF +  + D+VSWN +++ YA++G+ +  L LF  M     V+ D  ++V  L
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM-KTNVKPDESTMVTVL 242

Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
           SACA   +   G+Q                          CG +E A  +FE +  KDV+
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVI 302

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SWN ++ GY+ +  +++A  LF++M +                                 
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRS-------------------------------- 330

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G  PN VT++S+L  CA +GA+ +G+  H Y  KR+  V  S+P  L    +LIDMY
Sbjct: 331 ---GESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV--SNPSSLRT--SLIDMY 383

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC  ++ A+ +FD++   NR +++W  MI  ++ +G AN A  +F +M +    ++P+ 
Sbjct: 384 AKCGDIEAAQQVFDSML--NRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG--IEPDD 439

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYE--MLIPFVAN--CLIDMYSRSGDIDTAR 517
            T    L AC+    L  GR I     R+  E   + P + +  C+ID+   SG    A 
Sbjct: 440 ITFVGLLSACSHSGMLDLGRHI----FRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAE 495

Query: 518 VVFDNLKQR-NVVSWTSLMTGYGMHG 542
            + ++++   + V W SL+    MHG
Sbjct: 496 EMINSMEMDPDGVIWCSLLKACKMHG 521



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 147/360 (40%), Gaps = 40/360 (11%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y+       A  L + +S     V  WN LI     + L   A  LF +M+R G  
Sbjct: 276 LIDLYIKCGEVETASGLFEGLSYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICS--SGFDSNVFVCNALMAMYARCDTLSYAR 190
           P+E T   +L AC  L +   G  +H  I     G  +   +  +L+ MYA+C  +  A+
Sbjct: 334 PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQ 393

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           Q+FD M    +    SWN ++  +A  G A     +F+RM  D  ++ D ++ V  LSAC
Sbjct: 394 QVFDSMLNRSLS---SWNAMIFGFAMHGRANPAFDIFSRMRKD-GIEPDDITFVGLLSAC 449

Query: 251 ASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           +  G    G+     M E  K+  +++      +  M+      G F++A  +   M  +
Sbjct: 450 SHSGMLDLGRHIFRSMTEDYKITPKLE-----HYGCMIDLLGHSGLFKEAEEMINSMEMD 504

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
               + V W +++   A + HG+  L          +EP       LLS   +      G
Sbjct: 505 P---DGVIWCSLLK--ACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATA----G 555

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF-----DAIAPKNRDV 424
           +       + +L+  G            +     C S+++  V+      D + P+NR++
Sbjct: 556 RWNEVAKRRALLNDKG------------MKKVPGCSSIEIDSVVHEFIIGDKLHPRNREI 603


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 287/762 (37%), Positives = 412/762 (54%), Gaps = 57/762 (7%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVI 161
            WN++I    R    + +  LF  M+     P  +T   V  AC  +    R G  VHA  
Sbjct: 401  WNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYT 460

Query: 162  CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              +G D   +  NAL+ MYAR   ++ A+ LF  +F     D+VSWNT++++ +Q+   E
Sbjct: 461  LRNG-DLRTYTNNALVTMYARLGRVNDAKALFG-VFDGK--DLVSWNTVISSLSQNDRFE 516

Query: 222  GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVKD 279
              LM    M  D  V+ DGV+L + L AC+ L     G++  C  +     +      ++
Sbjct: 517  EALMYVYLMIVD-GVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLI------EN 569

Query: 280  VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
                 A+V  Y      +    +F  +    V+  V  W+A++AGYA+     +AL +F 
Sbjct: 570  SFVGTALVDMYCNCKQPKKGRLVFDGV----VRRTVAVWNALLAGYARNEFDDQALRLFV 625

Query: 340  QM----QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +M    +FC   PN  T  S+L  C         +  H Y +KR          D  V N
Sbjct: 626  EMISESEFC---PNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFG------KDKYVQN 676

Query: 396  ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM----- 450
            AL+DMY++   V++++ +F  +    RD+ +W  MI      G  +DAL L  +M     
Sbjct: 677  ALMDMYSRMGRVEISKTIFGRM--NKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQG 734

Query: 451  ---------FQQDKLV--KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
                     ++ D  V  KPN+ TL   L  CA LAAL  G++IHAY ++ +  M +  V
Sbjct: 735  EDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVA-V 793

Query: 500  ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM----- 554
             + L+DMY++ G ++ A  VFD +  RNV++W  L+  YGMHG G++A   F  M     
Sbjct: 794  GSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGG 853

Query: 555  -RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
              +E + P+ VT++ +  ACSHSGMVD+GL  F +M    G+  R +HYAC+VDLLGR+ 
Sbjct: 854  SNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSG 913

Query: 614  RLDEAVELIEGMPMEPTPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            R+ EA ELI  MP     +  W +LL  CRIH +VE GE+AA  L  LE      Y L+S
Sbjct: 914  RVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMS 973

Query: 673  NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
            NIY++AG W     +R  MK  GV+K PGCSW++  +    F  GD +HPQS++++E L 
Sbjct: 974  NIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLE 1033

Query: 733  GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
             L QR++  GYVP  S  LH+VDDEEK  +L  HSE+LA+A+G+L T PGT IR+ KNLR
Sbjct: 1034 TLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLR 1093

Query: 793  ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +C DCH A   IS I++ EIILRD  RFHHF  G+C+C  YW
Sbjct: 1094 VCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 165/582 (28%), Positives = 276/582 (47%), Gaps = 55/582 (9%)

Query: 90  LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149
           ++R SPS      W  L+R         +A   +  M+     PD + FP VLKA   + 
Sbjct: 290 VERRSPSQ-----WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVH 344

Query: 150 SSRCGSSVHAVICSSGF--DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
               G  +HA +   G    S+V V N+L+ MY +C  L+ ARQ+FD++      D VSW
Sbjct: 345 DLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDR---DHVSW 401

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-GTWSRGKQCGMME 266
           N+++A   +  + E  L LF  M  +  V     +LV+   AC+ + G    GKQ     
Sbjct: 402 NSMIATLCRFEEWELSLHLFRLMLSE-NVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYT 460

Query: 267 EAKKVFERMKVKDVVSW--NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                   ++  D+ ++  NA+VT Y+R+G   DA ALF     +    ++V+W+ VI+ 
Sbjct: 461 --------LRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGK----DLVSWNTVISS 508

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            +Q     EAL     M   G+ P+ VTL S+L  C+ +  L +G+E HCY ++     +
Sbjct: 509 LSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALR-----N 563

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
           G   ++  V  AL+DMY  CK     R++FD +    R VA W  ++  Y++N   + AL
Sbjct: 564 GDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVV--RRTVAVWNALLAGYARNEFDDQAL 621

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF +M  + +   PNA T +  L AC R         IH Y+++  +     +V N L+
Sbjct: 622 RLFVEMISESEFC-PNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGK-DKYVQNALM 679

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKEG----- 558
           DMYSR G ++ ++ +F  + +R++VSW +++TG  + G  D A     +M R++G     
Sbjct: 680 DMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSD 739

Query: 559 ------------LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
                         P+ VT + +L  C+    + +G K   + + +  ++      + +V
Sbjct: 740 TFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG-KEIHAYAVKQKLAMDVAVGSALV 798

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           D+  +   L+ A  + + MP+    I W  L+    +H   E
Sbjct: 799 DMYAKCGCLNLASRVFDQMPIRNV-ITWNVLIMAYGMHGKGE 839


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 414/738 (56%), Gaps = 29/738 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR----GWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           WN++IR        + +F L  +MM       + PD  T   VL  C        G  VH
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 65

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                   D  + + NALM MY++C  ++ A+ +F         ++VSWNT+V  ++  G
Sbjct: 66  GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK---NVVSWNTMVGGFSAEG 122

Query: 219 DAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           D  G   +  +M  G   V+ D V+++NA+  C         K+       K+ F    V
Sbjct: 123 DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYS-LKQEF----V 177

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            + +  NA V  Y++ GS   A  +F  +R + V     +W+A+I G+AQ      +LD 
Sbjct: 178 YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVN----SWNALIGGHAQSNDPRLSLDA 233

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
             QM+  GL P+  T+ SLLS C+ + +L LGKE H + I+  L        DL V  ++
Sbjct: 234 HLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLE------RDLFVYLSV 287

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           + +Y  C  +   + +FDA+  +++ + +W  +I  Y QNG  + AL +F QM      +
Sbjct: 288 LSLYIHCGELCTVQALFDAM--EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYG--I 343

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           +    ++     AC+ L +LR GR+ HAY L++  E    F+A  LIDMY+++G I  + 
Sbjct: 344 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLED-DAFIACSLIDMYAKNGSITQSS 402

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VF+ LK+++  SW +++ GYG+HGL  +A   F++M++ G  PD +TFL +L AC+HSG
Sbjct: 403 KVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSG 462

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVA 636
           ++ +GL+Y D M   FG+    +HYAC++D+LGRA +LD+A+ ++ E M  E    IW +
Sbjct: 463 LIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKS 522

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ CRIH N+E+GE  A +L ELE EK  +Y LLSN+YA  G+W+DV ++R  M    +
Sbjct: 523 LLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSL 582

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           +K  GCSW++      +F VG+R     ++I  + + L  +I  MGY P T    HD+ +
Sbjct: 583 RKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSE 642

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EEK + L  HSEKLAL YG++ T+ GT IR+ KNLRIC DCH+A   IS ++  EI++RD
Sbjct: 643 EEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRD 702

Query: 817 SNRFHHFKEGSCTCKGYW 834
           + RFHHFK G C+C  YW
Sbjct: 703 NKRFHHFKNGVCSCGDYW 720



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQ--DKLVKPNAFTLSCALMACARLAALRF 479
           R+  +W  MI  +S NG + ++  L  +M ++  D    P+  TL   L  CAR   +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 480 GRQIHAYV--LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           G+ +H +   LR   E+++    N L+DMYS+ G I  A+++F     +NVVSW +++ G
Sbjct: 61  GKGVHGWAVKLRLDKELVLN---NALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 117

Query: 538 YGMHGLGDKAHWAFDQMRK-----EGLAPDGVTFLVLLYACSHSGMV 579
           +   G     H  FD +R+     E +  D VT L  +  C H   +
Sbjct: 118 FSAEG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 161



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 30/272 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN +I   ++   PD A  +F QM+  G      +   V  AC  LPS R G   H
Sbjct: 311 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 370

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A       + + F+  +L+ MYA+  +++ + ++F+ + +       SWN ++  Y   G
Sbjct: 371 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEK---STASWNAMIMGYGIHG 427

Query: 219 DAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            A+  + LF  M  TG      D ++ +  L+AC            G++ E  +  ++MK
Sbjct: 428 LAKEAIKLFEEMQRTGH---NPDDLTFLGVLTAC---------NHSGLIHEGLRYLDQMK 475

Query: 277 VK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                  ++  +  ++    R G  + A  +  +   E   + +  W ++++  + R H 
Sbjct: 476 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGI--WKSLLS--SCRIHQ 531

Query: 332 HEALDVFRQMQFCGLEP----NVVTLVSLLSG 359
           +  +      +   LEP    N V L +L +G
Sbjct: 532 NLEMGEKVAAKLFELEPEKPENYVLLSNLYAG 563


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/735 (36%), Positives = 422/735 (57%), Gaps = 30/735 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N+LI    +    D A  LF +M R    PD  T   +L AC    +   G  +H+ + 
Sbjct: 282 FNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVI 341

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G  S++ V  AL+ +Y  C  +  A ++F         ++V WN ++ A+ +  +   
Sbjct: 342 KAGISSDMIVEGALLDLYVNCSDIKTAHEMF---LTAQTENVVLWNVMLVAFGKLDNLSE 398

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
              +F +M    +++G   +  +  + L  C S+G    G+Q        +V +     +
Sbjct: 399 SFRIFRQM----QIKGLIPNQFTYPSILRTCTSVGALDLGEQI-----HTQVIKTGFQFN 449

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   + ++  Y++ G  + A  + + + +++V    V+W+A+I+GYAQ     EAL  F+
Sbjct: 450 VYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV----VSWTALISGYAQHNLFAEALKHFK 505

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M   G++ + +   S +S CA + AL  G++ H  +      V G + +DL + NAL+ 
Sbjct: 506 EMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY-----VSG-YSEDLSIGNALVS 559

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YA+C  +  A + F+ I  K  D  +W  +I  ++Q+G   DAL +F QM  + KL + 
Sbjct: 560 LYARCGRIKEAYLEFEKIDAK--DSISWNGLISGFAQSGYCEDALKVFAQM-NRAKL-EA 615

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           + FT   A+ A A +A ++ G+QIHA +++  ++  I  V+N LI  Y++ G I+ AR  
Sbjct: 616 SFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIE-VSNALITFYAKCGSIEDARRE 674

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  + ++N VSW +++TGY  HG G++A   F++M++ G  P+ VTF+ +L ACSH G+V
Sbjct: 675 FCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLV 734

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +GL YF+SMSKE G+  +  HYAC+VDL+ RA  L  A + IE MP+EP   IW  LL+
Sbjct: 735 TKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLS 794

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            C +H NVE+GE AA  LLELE E   +Y LLSN+YA +G+W    + R +M++ GVKK 
Sbjct: 795 ACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKE 854

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG SW++ K     F+VGDR HP + KIYE LA L ++   +GY       L+DV+ E+K
Sbjct: 855 PGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQK 914

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
              ++ HSEKLA+ +G+L+ +   PI + KNLR+C DCHS I F+S I N  II+RD+ R
Sbjct: 915 DPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYR 974

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF+ G C+CK YW
Sbjct: 975 FHHFEGGICSCKDYW 989



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 165/543 (30%), Positives = 274/543 (50%), Gaps = 27/543 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSV 157
           SV  W+ +I   +  ++ +    LF  M+     P E +F  VL+AC G     R    +
Sbjct: 75  SVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQI 134

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA I   G   +  + N L+ +YA+   +  AR++FD +      D VSW  +++ ++Q+
Sbjct: 135 HARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK---DSVSWVAMISGFSQN 191

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  E  + LF  M     +        + LS C  +  +  G+Q   +     VF+    
Sbjct: 192 GYEEEAIHLFCEMH-TAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHAL-----VFKYGSS 245

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +    NA+VT YSR+ +F  A  +F KM+ ++     V+++++I+G AQ+G    AL++
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDE----VSFNSLISGLAQQGFSDGALEL 301

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M+   L+P+ VT+ SLLS CAS GAL  G++ H Y IK  +S       D++V  AL
Sbjct: 302 FTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS------SDMIVEGAL 355

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +D+Y  C  +  A  MF  +  +  +V  W VM+ ++ +    +++  +F QM  Q K +
Sbjct: 356 LDLYVNCSDIKTAHEMF--LTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQM--QIKGL 411

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            PN FT    L  C  + AL  G QIH  V++  ++  + +V + LIDMY++ G +DTA 
Sbjct: 412 IPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNV-YVCSVLIDMYAKHGKLDTAH 470

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
           V+   L + +VVSWT+L++GY  H L  +A   F +M   G+  D + F   + AC+   
Sbjct: 471 VILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQ 530

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            ++QG +   + S   G S        +V L  R  R+ EA    E +  + + I W  L
Sbjct: 531 ALNQG-RQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDS-ISWNGL 588

Query: 638 LNG 640
           ++G
Sbjct: 589 ISG 591



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 163/600 (27%), Positives = 291/600 (48%), Gaps = 56/600 (9%)

Query: 1   MIQVNGVFPLLKSKTPLTLNHLFTNI----------KLFS-----VTTTPCIKITSLLLR 45
            +    VF  ++SK  ++ N L + +          +LF+          C+ + SLL  
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLL-S 322

Query: 46  QCKS---LTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
            C S   L +   +H  +I   ++   +    L+  YV+ +    A  +   ++    +V
Sbjct: 323 ACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF--LTAQTENV 380

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
             WN ++    +L     +FR+F QM  +G  P+++T+P +L+ C  + +   G  +H  
Sbjct: 381 VLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ 440

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +  +GF  NV+VC+ L+ MYA+   L  A  +   + +    D+VSW  +++ YAQ    
Sbjct: 441 VIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTED---DVVSWTALISGYAQHNLF 497

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L  F  M  +  +Q D +   +A+SACA +   ++G+Q           E + +   
Sbjct: 498 AEALKHFKEML-NRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG-- 554

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              NA+V+ Y+R G  ++A+  F+K+  +    + ++W+ +I+G+AQ G+  +AL VF Q
Sbjct: 555 ---NALVSLYARCGRIKEAYLEFEKIDAK----DSISWNGLISGFAQSGYCEDALKVFAQ 607

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M    LE +  T  S +S  A++  +  GK+ H   IKR          D+ V NALI  
Sbjct: 608 MNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKR------GFDSDIEVSNALITF 661

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC S++ AR  F  +  KN DV +W  MI  YSQ+G  N+A+ LF +M Q  ++  PN
Sbjct: 662 YAKCGSIEDARREFCEMPEKN-DV-SWNAMITGYSQHGYGNEAVNLFEKMKQVGEM--PN 717

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARV 518
             T    L AC+ +  +  G  +  +   ++   L+P  A+  C++D+ SR+G +  AR 
Sbjct: 718 HVTFVGVLSACSHVGLVTKG--LGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARK 775

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVL--LYACS 574
             + +  + +   W +L++   +H   +   +A   + +  L P D  T+++L  +YA S
Sbjct: 776 FIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLE--LEPEDSATYVLLSNMYAVS 833



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 168/357 (47%), Gaps = 20/357 (5%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N +V  Y  +G  +    +F+ M   +V+    +W  +I+G+ ++   +  LD+F  M  
Sbjct: 49  NKLVDVYFALGDLDGVVKVFEDMPNRSVR----SWDKIISGFMEKKMSNRVLDLFSCMIE 104

Query: 344 CGLEPNVVTLVSLLSGCAS--VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             + P  ++  S+L  C+   +G +   ++ H   I   L          ++ N LI +Y
Sbjct: 105 ENVSPTEISFASVLRACSGHRIG-IRYAEQIHARIICHGLLCSP------IISNPLIGLY 157

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK   +  AR +FD +  K  D  +W  MI  +SQNG   +A+ LF +M      + P  
Sbjct: 158 AKNGLIISARKVFDNLCTK--DSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG--IFPTP 213

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           +  S  L  C ++     G Q+HA V +     L  +V N L+ +YSR  +  +A  VF 
Sbjct: 214 YVFSSVLSGCTKIKLFDVGEQLHALVFKYG-SSLETYVCNALVTLYSRMPNFVSAEKVFS 272

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            ++ ++ VS+ SL++G    G  D A   F +M+++ L PD VT   LL AC+ +G + +
Sbjct: 273 KMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCK 332

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           G +    + K  GIS+       ++DL    + +  A E+      E   ++W  +L
Sbjct: 333 GEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENV-VLWNVML 387



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 44/192 (22%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N L+D+Y   GD+D    VF+++  R+V SW  +++G+    + ++    F  M +E 
Sbjct: 47  LCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEEN 106

Query: 559 LAPDGVTFLVLLYACS------------HSGMVDQGL----------------------- 583
           ++P  ++F  +L ACS            H+ ++  GL                       
Sbjct: 107 VSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISA 166

Query: 584 -KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME---PTPIIWVALLN 639
            K FD++  +  +S     +  ++    +    +EA+ L   M      PTP ++ ++L+
Sbjct: 167 RKVFDNLCTKDSVS-----WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLS 221

Query: 640 GCRIHANVELGE 651
           GC      ++GE
Sbjct: 222 GCTKIKLFDVGE 233


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 403/721 (55%), Gaps = 70/721 (9%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
            +L+A YA  D L  A   FD +  P   D V  N +++AYA++  A   + +F  +   
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAV-PPARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 234 VKVQGDGVSLVNALSA----------------CASLGTWSRGK------------QCGMM 265
             ++ D  S    LSA                C+ L + + G             +C   
Sbjct: 151 GSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESP 210

Query: 266 E---EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           E   +A+KV + M  KD ++W  MV GY R G    A ++F+++   + K +VV W+A+I
Sbjct: 211 EATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEV---DGKFDVV-WNAMI 266

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +GY   G   EA ++FR+M    +  +  T  S+LS CA+VG    GK  H   I+  L 
Sbjct: 267 SGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIR--LQ 324

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------------- 421
            +      L V NAL+  Y+KC ++ VAR +FD +  K+                     
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAV 384

Query: 422 --------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
                   ++  +W VM+  Y   G A DAL LF +M  ++  VKP  +T + A+ AC  
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSEN--VKPCDYTYAGAIAACGE 442

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L AL+ G+Q+H ++++  +E       N LI MY+R G +  A ++F  +   + VSW +
Sbjct: 443 LGALKHGKQLHGHIVQLGFEGSNS-AGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNA 501

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++  G HG G +A   FD+M  EG+ PD ++FL +L AC+HSG+VD+G +YF+SM ++F
Sbjct: 502 MISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDF 561

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    +HY  ++DLLGRA R+ EA +LI+ MP EPTP IW A+L+GCR   ++ELG  A
Sbjct: 562 GIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHA 621

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A++L ++  + DG+Y LLSN Y+ AG W D AR+R LM+  GVKK PGCSW++       
Sbjct: 622 ADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHV 681

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F VGD  HP++ ++Y+ L  +  +++ +GYVP T   LHD++  +K  +LF HSE+LA+ 
Sbjct: 682 FLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVG 741

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+L   PG  + + KNLRIC DCH+AI F+S  +  EI++RD  RFHHFK+G C+C  Y
Sbjct: 742 FGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNY 801

Query: 834 W 834
           W
Sbjct: 802 W 802



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 162/596 (27%), Positives = 270/596 (45%), Gaps = 98/596 (16%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + L+AAY + +    A+S    + P+       NA+I    R      A  +F  ++
Sbjct: 89  VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 128 RRG-WHPDEYTFPFVLKACGELP--SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
             G   PD+Y+F  +L A G LP  S R  + +H  +  SG    + VCNAL+A+Y +C+
Sbjct: 149 ASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCE 208

Query: 185 TLSY---ARQLFDEM---------------------------FQP--GICDIVSWNTIVA 212
           +      AR++ DEM                           F+   G  D+V WN +++
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVV-WNAMIS 267

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------ 260
            Y  SG A     LF RM  + +V  D  +  + LSACA++G ++ GK            
Sbjct: 268 GYVHSGMAVEAFELFRRMVLE-RVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPN 326

Query: 261 ------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
                             +CG +  A+++F+ M +KDVVSWN +++GY      + A  +
Sbjct: 327 FVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F++M  +    N ++W  +++GY   G   +AL +F +M+   ++P   T    ++ C  
Sbjct: 387 FEEMPYK----NELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGE 442

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           +GAL  GK+ H + ++  L  +GS+       NALI MYA+C +V  A +MF  +   N 
Sbjct: 443 LGALKHGKQLHGHIVQ--LGFEGSNSAG----NALITMYARCGAVKEAHLMF--LVMPNI 494

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           D  +W  MI +  Q+G   +AL LF +M  +   + P+  +    L AC     +  G +
Sbjct: 495 DSVSWNAMISALGQHGHGREALELFDRMVAEG--IYPDRISFLTVLTACNHSGLVDEGFR 552

Query: 483 IHAYVLRNQYEMLIPFVANC--LIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYG 539
               + R+    +IP   +   LID+  R+G I  AR +   +      S W ++++G  
Sbjct: 553 YFESMKRDF--GIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCR 610

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG-----------MVDQGLK 584
             G  +    A DQ+ K     DG T+++L    S +G           M D+G+K
Sbjct: 611 TSGDMELGAHAADQLFKMTPQHDG-TYILLSNTYSAAGCWVDAARVRKLMRDRGVK 665



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 54/351 (15%)

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           VS  ++V  Y+       A + F  +     + + V  +AVI+ YA+  H   A+ VFR 
Sbjct: 89  VSATSLVAAYAAADRLPAAVSFFDAV--PPARRDTVLHNAVISAYARASHAAPAVAVFRS 146

Query: 341 MQFCG-LEPNVVTLVSLLSGCASVGALLLGK--ETHCYTIKRVLSVDGSHPDDLMVINAL 397
           +   G L P+  +  +LLS    +  + +    + HC  +K      G+    L V NAL
Sbjct: 147 LLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKS--GAGGA----LSVCNAL 200

Query: 398 IDMYAKCKSVDV---ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP------ 448
           + +Y KC+S +    AR + D +   N+D  TWT M+  Y + G    A ++F       
Sbjct: 201 VALYMKCESPEATRDARKVLDEM--PNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKF 258

Query: 449 ---------------------QMFQQDKL--VKPNAFTLSCALMACARLAALRFGRQIHA 485
                                ++F++  L  V  + FT +  L ACA +     G+ +H 
Sbjct: 259 DVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHG 318

Query: 486 YVLRNQ----YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            ++R Q     E  +P V N L+  YS+ G+I  AR +FDN+  ++VVSW ++++GY   
Sbjct: 319 QIIRLQPNFVPEAALP-VNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVES 377

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
              DKA   F++M  +    + ++++V++    H G  +  LK F+ M  E
Sbjct: 378 SCLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFAEDALKLFNKMRSE 424


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 291/907 (32%), Positives = 449/907 (49%), Gaps = 115/907 (12%)

Query: 26   IKLFSVTTTPCIKITSLLLRQCK----SLTQVYLIHQQIIVQNL--THVPPSHLIAAYVS 79
            +++ S   TP     S +L  C+    +   V  IH +I+ Q L  + V  + LI  Y  
Sbjct: 135  VRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSR 194

Query: 80   HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
            +     A  +   +     S   W A+I    +      A RLF  M   G  P  Y F 
Sbjct: 195  NGFVDLARRVFDGLRLKDHSS--WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 252

Query: 140  FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
             VL AC ++ S   G  +H ++   GF S+ +VCNAL+++Y     L  A  +F  M Q 
Sbjct: 253  SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 312

Query: 200  GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
               D V++NT++   +Q G  E  + LF RM  D  ++ D  +L + + AC++ GT  RG
Sbjct: 313  ---DAVTYNTLINGLSQCGYGEKAMELFKRMHLD-GLEPDSNTLASLVVACSADGTLFRG 368

Query: 260  KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS-- 291
            +Q                          C  +E A   F   +V++VV WN M+  Y   
Sbjct: 369  QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 428

Query: 292  ---------------------------------RIGSFEDAFALFKKMRQENVKLN---- 314
                                             R+G  E    +  ++ + N +LN    
Sbjct: 429  DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVC 488

Query: 315  ---------------------------VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
                                       VV+W+ +IAGY Q     +AL  FRQM   G+ 
Sbjct: 489  SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIR 548

Query: 348  PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
             + V L + +S CA + AL  G++ H        S       DL   NAL+ +Y++C  +
Sbjct: 549  SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS------SDLPFQNALVTLYSRCGKI 602

Query: 408  DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
            + + + F+       D   W  ++  + Q+G   +AL +F +M ++   +  N FT   A
Sbjct: 603  EESYLAFEQTEAG--DNIAWNALVSGFQQSGNNEEALRVFVRMNREG--IDNNNFTFGSA 658

Query: 468  LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
            + A +  A ++ G+Q+HA + +  Y+     V N LI MY++ G I  A   F  +  +N
Sbjct: 659  VKAASETANMKQGKQVHAVITKTGYDSETE-VCNALISMYAKCGSISDAEKQFLEVSTKN 717

Query: 528  VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             VSW +++  Y  HG G +A  +FDQM    + P+ VT + +L ACSH G+VD+G+ YF+
Sbjct: 718  EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 777

Query: 588  SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            SM+ E+G+S + EHY C+VD+L RA  L  A E I+ MP++P  ++W  LL+ C +H N+
Sbjct: 778  SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 837

Query: 648  ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
            E+GE AA+ LLELE E   +Y LLSN+YA + +W      R  MK  GVKK PG SW++ 
Sbjct: 838  EIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 897

Query: 708  KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
            K    +F+VGD+ HP + +I+E    L +R   +GYV      L+++  E+K  ++F HS
Sbjct: 898  KNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHS 957

Query: 768  EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
            EKLA+++G+L+     PI + KNLR+C DCH+ I F+S + N EII+RD+ RFHHF+ G+
Sbjct: 958  EKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGA 1017

Query: 828  CTCKGYW 834
            C+CK YW
Sbjct: 1018 CSCKDYW 1024



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 154/551 (27%), Positives = 267/551 (48%), Gaps = 27/551 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSV 157
           ++F WN +I+      L    F LF++M+     P+E TF  VL+AC G   +      +
Sbjct: 110 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 169

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA I   G   +  VCN L+ +Y+R   +  AR++FD +    + D  SW  +++  +++
Sbjct: 170 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL---RLKDHSSWVAMISGLSKN 226

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
                 + LF  M   + +     +  + LSAC  + +   G+Q   +     V +    
Sbjct: 227 ECEAEAIRLFCDMYV-LGIMPTPYAFSSVLSACKKIESLEIGEQLHGL-----VLKLGFS 280

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D    NA+V+ Y  +G+   A  +F  M Q     + VT++ +I G +Q G+G +A+++
Sbjct: 281 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQR----DAVTYNTLINGLSQCGYGEKAMEL 336

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M   GLEP+  TL SL+  C++ G L  G++ H YT K   + +        +  AL
Sbjct: 337 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK------IEGAL 390

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +++YAKC  ++ A   F  +  +  +V  W VM+ +Y       ++  +F QM  Q + +
Sbjct: 391 LNLYAKCADIETALDYF--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM--QIEEI 446

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            PN +T    L  C RL  L  G QIH+ +++  ++ L  +V + LIDMY++ G +DTA 
Sbjct: 447 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ-LNAYVCSVLIDMYAKLGKLDTAW 505

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +      ++VVSWT+++ GY  +   DKA   F QM   G+  D V     + AC+   
Sbjct: 506 DILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 565

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            + +G +   + +   G S+       +V L  R  +++E+    E        I W AL
Sbjct: 566 ALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNAL 623

Query: 638 LNGCRIHANVE 648
           ++G +   N E
Sbjct: 624 VSGFQQSGNNE 634



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 234/507 (46%), Gaps = 49/507 (9%)

Query: 129 RGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           RG  P+  T  ++L+ C +   S   G  +H+ I   G DSN  +   L   Y     L 
Sbjct: 38  RGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLY 97

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            A ++FDEM +     I +WN ++   A          LF RM  +     +G +    L
Sbjct: 98  GAFKVFDEMPER---TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEG-TFSGVL 153

Query: 248 SACASLGTWSRGKQCG--MMEE--AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
            AC       RG      ++E+  A+ +++ ++   VV  N ++  YSR G  + A  +F
Sbjct: 154 EAC-------RGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVF 205

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
             +R ++      +W A+I+G ++     EA+ +F  M   G+ P      S+LS C  +
Sbjct: 206 DGLRLKDHS----SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 261

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
            +L +G++ H   +K   S       D  V NAL+ +Y    ++  A  +F  ++   RD
Sbjct: 262 ESLEIGEQLHGLVLKLGFS------SDTYVCNALVSLYFHLGNLISAEHIFSNMS--QRD 313

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
             T+  +I   SQ G    A+ LF +M   D L +P++ TL+  ++AC+    L  G+Q+
Sbjct: 314 AVTYNTLINGLSQCGYGEKAMELFKRM-HLDGL-EPDSNTLASLVVACSADGTLFRGQQL 371

Query: 484 HAYVLRNQYEMLIPFVAN-----CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
           HAY  +      + F +N      L+++Y++  DI+TA   F   +  NVV W  ++  Y
Sbjct: 372 HAYTTK------LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 425

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISA 597
           G+      +   F QM+ E + P+  T+  +L  C   G ++ G +    + K  F ++A
Sbjct: 426 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 598 RAEHYAC--IVDLLGRANRLDEAVELI 622
               Y C  ++D+  +  +LD A +++
Sbjct: 486 ----YVCSVLIDMYAKLGKLDTAWDIL 508



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 185/404 (45%), Gaps = 57/404 (14%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A KVF+ M  + + +WN M+   +      + F LF +M  ENV  N  T+S V+
Sbjct: 94  GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 153

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
              A RG G  A DV  Q+                               H   + + L 
Sbjct: 154 E--ACRG-GSVAFDVVEQI-------------------------------HARILYQGLR 179

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                 D  +V N LID+Y++   VD+AR +FD +  K  D ++W  MI   S+N    +
Sbjct: 180 ------DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK--DHSSWVAMISGLSKNECEAE 231

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ LF  M+    +  P AF  S  L AC ++ +L  G Q+H  VL+  +     +V N 
Sbjct: 232 AIRLFCDMYVLGIMPTPYAF--SSVLSACKKIESLEIGEQLHGLVLKLGFSS-DTYVCNA 288

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ +Y   G++ +A  +F N+ QR+ V++ +L+ G    G G+KA   F +M  +GL PD
Sbjct: 289 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 348

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
             T   L+ ACS  G + +G +   + + + G ++  +    +++L  +   ++ A++  
Sbjct: 349 SNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 407

Query: 623 EGMPMEPTPIIWVALL----------NGCRIHANVELGELAANR 656
               +E   ++W  +L          N  RI   +++ E+  N+
Sbjct: 408 LETEVENV-VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 450



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 31/203 (15%)

Query: 453 QDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +++ ++PN  TL   L  C +   +L  GR++H+ +L+   +     ++  L D Y   G
Sbjct: 36  ENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDS-NGCLSEKLFDFYLFKG 94

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           D+  A  VFD + +R + +W  ++       L  +    F +M  E + P+  TF  +L 
Sbjct: 95  DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 154

Query: 572 ACS------------HSGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDE 617
           AC             H+ ++ QGL              R     C  ++DL  R   +D 
Sbjct: 155 ACRGGSVAFDVVEQIHARILYQGL--------------RDSTVVCNPLIDLYSRNGFVDL 200

Query: 618 AVELIEGMPMEPTPIIWVALLNG 640
           A  + +G+ ++     WVA+++G
Sbjct: 201 ARRVFDGLRLKDHS-SWVAMISG 222


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/587 (40%), Positives = 365/587 (62%), Gaps = 52/587 (8%)

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL-------- 313
           CG + E +++F+++  + V  WN ++ GY++IG+F ++ +LFK+MR+  ++         
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208

Query: 314 ------NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
                 +V++W+++I+GY   G   + LD+F QM   G+  ++ T+VS+           
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV----------- 257

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
                                 +L + N L+DMY+K  +++ A  +F+ +    R V +W
Sbjct: 258 ----------------------ELTLNNCLLDMYSKSGNLNSAIQVFETMG--ERSVVSW 293

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T MI  Y++ G ++ ++ LF +M ++D    PN+ T++C L ACA LAAL  G++IH ++
Sbjct: 294 TSMIAGYAREGLSDMSVRLFHEMEKEDLF--PNSITMACILPACASLAALERGQEIHGHI 351

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           LRN +  L   VAN L+DMY + G +  AR++FD + ++++VSWT ++ GYGMHG G +A
Sbjct: 352 LRNGFS-LDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEA 410

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
             AF++MR  G+ PD V+F+ +LYACSHSG++D+G  +F+ M     I  ++EHYACIVD
Sbjct: 411 IAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVD 470

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LL RA  L +A + I+ MP+EP   IW ALL GCRI+ +V+L E  A  + ELE E  G 
Sbjct: 471 LLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGY 530

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y LL+NIYA A +W++V ++R  +   G++K PGCSW++ K     F  GD +HP + KI
Sbjct: 531 YVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKI 590

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
             +L     R+K  G+ P+  +AL   DD EK   L  HSEK+A+A+GIL+  PG  +R+
Sbjct: 591 ELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRV 650

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           TKNLR+CGDCH    F+S ++  +IILRDSNRFHHFK+GSC+C+G+W
Sbjct: 651 TKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 229/499 (45%), Gaps = 96/499 (19%)

Query: 120 FRLFLQMMRRGWHPDE--YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            R  ++++ +   PD    T+  VL+ C +L S + G  +H++I S+  + +  + + L+
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            MY  C  L   R++FD++       +  WN ++  YA+ G+    L LF RM       
Sbjct: 144 FMYVTCGDLREGRRIFDKVANE---KVFLWNLLMNGYAKIGNFRESLSLFKRM------- 193

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGM--MEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                                 ++ G+  +E A+K+F+ +  +DV+SWN+M++GY   G 
Sbjct: 194 ----------------------RELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGL 231

Query: 296 FEDAFALFKK--------------------------MRQENVKLN-------------VV 316
            E    LF++                          M  ++  LN             VV
Sbjct: 232 SEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 291

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+++IAGYA+ G    ++ +F +M+   L PN +T+  +L  CAS+ AL  G+E H + 
Sbjct: 292 SWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHI 351

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           ++   S+D        V NAL+DMY KC ++ +AR++FD I  K  D+ +WTVMI  Y  
Sbjct: 352 LRNGFSLDRH------VANALVDMYLKCGALGLARLLFDMIPEK--DLVSWTVMIAGYGM 403

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G  ++A+A F +M  ++  ++P+  +    L AC+    L  G      +  N      
Sbjct: 404 HGYGSEAIAAFNEM--RNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPK 461

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG---YGMHGLGDK-AHWAF 551
                C++D+ +R+G++  A      +  + +   W +L+ G   Y    L +K A   F
Sbjct: 462 SEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVF 521

Query: 552 DQMRKEGLAPDGVTFLVLL 570
           +      L P+   + VLL
Sbjct: 522 E------LEPENTGYYVLL 534



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 21/231 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W ++I    R  L D + RLF +M +    P+  T   +L AC  L +   G  +H
Sbjct: 289 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIH 348

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +GF  +  V NAL+ MY +C  L  AR LFD + +    D+VSW  ++A Y   G
Sbjct: 349 GHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK---DLVSWTVMIAGYGMHG 405

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                +  F  M  +  ++ D VS ++ L AC+           G+++E    F  M+  
Sbjct: 406 YGSEAIAAFNEMR-NSGIEPDEVSFISILYACS---------HSGLLDEGWGFFNMMRNN 455

Query: 279 DVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
             +      +  +V   +R G+   A+   K M    ++ +   W A++ G
Sbjct: 456 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM---PIEPDATIWGALLCG 503



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 123/294 (41%), Gaps = 58/294 (19%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN++I   V   L +    LF QM+  G + D  T   V     EL  + C      
Sbjct: 216 VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV-----ELTLNNC------ 264

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                           L+ MY++   L+ A Q+F+ M   G   +VSW +++A YA+ G 
Sbjct: 265 ----------------LLDMYSKSGNLNSAIQVFETM---GERSVVSWTSMIAGYAREGL 305

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
           ++  + LF  M  +  +  + +++   L ACASL    RG++                  
Sbjct: 306 SDMSVRLFHEMEKE-DLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN 364

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG +  A+ +F+ +  KD+VSW  M+ GY   G   +A A F +MR   ++ 
Sbjct: 365 ALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEP 424

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGAL 366
           + V++ +++   +  G   E    F  M+  C +EP       ++   A  G L
Sbjct: 425 DEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNL 478


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/789 (36%), Positives = 425/789 (53%), Gaps = 88/789 (11%)

Query: 79  SHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTF 138
           + N P    SL      +   +  WN  I   +R    D+A RLF  M RR       ++
Sbjct: 33  TRNQPKTTSSL-----ATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRS----SISW 83

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDS----NVFVCNALMAMYARCDTLSYARQLFD 194
             ++        S C S+    +    F+     ++   N +++   R   L  AR LFD
Sbjct: 84  NAMI--------SGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFD 135

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           +M +    D+VSWN +++ YAQ+G  +    +F           D +   N++S    L 
Sbjct: 136 QMPER---DVVSWNAMLSGYAQNGYVKEAKEIF-----------DEMPCKNSISWNGMLA 181

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
            +    Q G +E+A+++FE     +++SWN M+ GY +     DA  +F +M + +    
Sbjct: 182 AYV---QNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE--- 235

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V+W+ +I+GYAQ G   EA  +F +        +V T  +++SG    G L        
Sbjct: 236 -VSWNTMISGYAQNGELLEAQRLFEESPV----RDVFTWTAMVSGYVQNGML-------- 282

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
              +RV   DG    + +  NA+I  Y +CK +D AR +F+A+  +N  V++W  MI  Y
Sbjct: 283 DEARRVF--DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQN--VSSWNTMITGY 338

Query: 435 SQNGGANDALALFPQMFQQDKLV-----------------------------KPNAFTLS 465
           +QNG    A   F +M Q+D +                              + N  T +
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 398

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L  CA +AAL  G+Q+H  V++   E    +V N L+ MY + G+ID A +VF+ +++
Sbjct: 399 STLSTCAEIAALELGKQVHGRVVKAGLESGC-YVGNALLVMYCKCGNIDDAYIVFEGIEE 457

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           + VVSW +++ GY  HG G +A   F+ M+K G+ PD VT + +L ACSH+G+VD+G +Y
Sbjct: 458 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 517

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F SM++++GI+A ++HY C++DLLGRA RLD+A  L++ MP EP    W ALL   RIH 
Sbjct: 518 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 577

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N ELGE AA  + E+E +  G Y LLSN+YA +GRW DV R+R  M+  GVKK PG SWV
Sbjct: 578 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 637

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + +    TF VGD  HP+  +IY  L  L  ++K  GYV  T   LHDV++EEK  +L  
Sbjct: 638 EVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKY 697

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+GIL    G PIR+ KNLR+C DCH+A+  IS I+   IILRDS+RFHHF  
Sbjct: 698 HSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNG 757

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 758 GQCSCGDYW 766


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/764 (37%), Positives = 409/764 (53%), Gaps = 53/764 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGELPSS---RCGSSVH 158
           +N+LI      R  + A      M+  G H    +T   VL AC  LP     R G   H
Sbjct: 136 YNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAH 195

Query: 159 AVICSSGF---DSNVFVCNALMAMYARCDTLSYARQLFDEM---FQPGICDIVSWNTIVA 212
           A     GF       F  NAL++MYAR   +  A+ LF      F PG  D+V+WNT+++
Sbjct: 196 AFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMIS 255

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM-----EE 267
              Q G     + +   M   + V+ DGV+  +AL AC+ L   + G++   +     + 
Sbjct: 256 LLVQGGRCAEAVEVLYDMV-SLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADL 314

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A   F    + D+ + N  V    R+         F  + + + +L +  W+A+I GYAQ
Sbjct: 315 AANSFVASALVDMYAGNEKVASARRV---------FDMVPEPSRQLGM--WNAMICGYAQ 363

Query: 328 RGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
            G   EAL++F +M+   G  P+  T+  +L  CA        +  H Y +KR ++    
Sbjct: 364 AGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMA---- 419

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
              +  V NAL+DMYA+   +DVAR +F  I P  RDV +W  +I      G A +A  L
Sbjct: 420 --GNRFVQNALMDMYARLGEMDVARRIFAMIDP--RDVVSWNTLITGCVVQGHAAEAFQL 475

Query: 447 FPQM--------------FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             +M                +     PN  TL   L  CA LAA   G++IH Y +R+  
Sbjct: 476 VTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHAL 535

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E  I  V + L+DMY++ G +  +R VFD L +RNV++W  L+  YGMHGLGD+A   FD
Sbjct: 536 ESDIA-VGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFD 594

Query: 553 QMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           +M   G A P+ VTF+  L ACSHSG+VD+GL+ F  M ++ G+    + +AC+VD+LGR
Sbjct: 595 EMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGR 654

Query: 612 ANRLDEAVELIEGM-PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           A RLDEA  +I  M P E     W +LL  CR+H NVELGE+AA RL ELE  +   Y L
Sbjct: 655 AGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVL 714

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           L NIY+ AG W     +R  M+  GV K PGCSW++       F  G+ +HP S +++  
Sbjct: 715 LCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAH 774

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           +  L +R++  GY P TS  LHDVD++EK  +L  HSEKLA+A+G+L   PG  IR+ KN
Sbjct: 775 MDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKN 834

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCH A  F+S ++  +I+LRD  RFHHF++GSC+C  YW
Sbjct: 835 LRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/754 (35%), Positives = 419/754 (55%), Gaps = 80/754 (10%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +LK C E  +     ++H+ I  +      F+ N L++ YA+  ++ YA ++FD+M  P 
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP- 73

Query: 201 ICDIVSWNTIVAAYAQ--------------------------SGDAEGGLMLFARMTGDV 234
             ++ SWNTI++AY++                          SG A  GL+  +    ++
Sbjct: 74  --NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 235 KVQGDGVSLVNALS-----------ACASLGTWSRG---------------------KQC 262
            ++ DG   +N ++            C  LG    G                      + 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           GM+  A+KVF+ +  K+VV +N ++ G  R G  ED+  LF +MR+ +     ++W+++I
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDS----ISWTSMI 247

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
            G+ Q G   +A+D+FR+M+   L+ +  T  S+L+ C  V AL  GK+ H Y I+    
Sbjct: 248 TGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT--- 304

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
               + D++ V +AL+DMY KCK++  A  +F  +  KN  V +WT M+  Y QNG + +
Sbjct: 305 ---DYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKN--VVSWTAMLVGYGQNGYSEE 359

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--VA 500
           A+  F  M  Q   ++P+ FTL   + +CA LA+L  G Q HA  L +    LI F  V+
Sbjct: 360 AVKTFSDM--QKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSG---LISFITVS 414

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N L+ +Y + G I+ +  +F+ +  ++ V+WT+L++GY   G  ++    F+ M   GL 
Sbjct: 415 NALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLK 474

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD VTF+ +L ACS +G+V++G + F+SM  E GI    +HY C++DL  RA R++EA  
Sbjct: 475 PDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARN 534

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
            I  MP  P  I W  LL+ CR + N+++G+ AA  L+EL+     SY LLS++YA  G+
Sbjct: 535 FINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGK 594

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W++VAR+R  M+  G++K PGCSW++ K     F   D+++P S +IY  L  L  ++  
Sbjct: 595 WEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIK 654

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GYVP  +  LHDV D EK  +L  HSEKLA+A+G+L   PG PIR+ KNLR+C DCH+A
Sbjct: 655 EGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNA 714

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             +IS I N EI++RD+ RFH FK+G+C+C  +W
Sbjct: 715 TKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 233/500 (46%), Gaps = 55/500 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR--GWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           WN+LI       L   + + +  M++    ++ +  TF  +L    +    + G  +H  
Sbjct: 109 WNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGH 168

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC------------------ 202
           +   GF S VFV + L+ MY++   +S AR++FDE+ +  +                   
Sbjct: 169 VVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDS 228

Query: 203 ----------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
                     D +SW +++  + Q+G     + +F  M  +  +Q D  +  + L+AC  
Sbjct: 229 KRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLE-NLQMDQYTFGSVLTACGG 287

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           +     GKQ            R   KD +   +A+V  Y +  + + A A+FKKM  +N 
Sbjct: 288 VMALQEGKQ------VHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKN- 340

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
              VV+W+A++ GY Q G+  EA+  F  MQ  G+EP+  TL S++S CA++ +L  G +
Sbjct: 341 ---VVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ 397

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   +   L         + V NAL+ +Y KC S++ +  +F+ I+ K  D  TWT ++
Sbjct: 398 FHARALTSGL------ISFITVSNALVTLYGKCGSIEDSHRLFNEISFK--DEVTWTALV 449

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+Q G AN+ + LF  M      +KP+  T    L AC+R   +  G QI   ++   
Sbjct: 450 SGYAQFGKANETIGLFESMLAHG--LKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEH 507

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWA 550
             + I     C+ID++SR+G I+ AR   + +    + +SW +L++    +G  D   WA
Sbjct: 508 GIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567

Query: 551 FDQMRKEGLAPDGVTFLVLL 570
            + + +  L P      VLL
Sbjct: 568 AEFLME--LDPHNTASYVLL 585



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 116/288 (40%), Gaps = 67/288 (23%)

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           +LL  C         K  H + IK +      +P+  + +N LI  YAK  S+  A  +F
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTL-----PYPETFL-LNNLISSYAKLGSIPYACKVF 67

Query: 415 DAIAPKN-----------------------------RDVATWTVMIGSYSQNGGANDALA 445
           D +   N                             RD  +W  +I  Y+  G    ++ 
Sbjct: 68  DQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVK 127

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
            +  M + D     N  T S  L+  ++   ++ GRQIH +V++  + M   FV + L+D
Sbjct: 128 AYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGF-MSYVFVGSPLVD 186

Query: 506 MYSRSGDIDTARVVFDNLKQRNVV-------------------------------SWTSL 534
           MYS+ G I  AR VFD L ++NVV                               SWTS+
Sbjct: 187 MYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSM 246

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +TG+  +GL   A   F +M+ E L  D  TF  +L AC     + +G
Sbjct: 247 ITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 466 CALMA-CARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVFDN 522
           CAL+  C         + +H+++++    +  P  F+ N LI  Y++ G I  A  VFD 
Sbjct: 13  CALLKLCCETHNFTKAKNLHSHIIKT---LPYPETFLLNNLISSYAKLGSIPYACKVFDQ 69

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +   N+ SW ++++ Y   G   +  + FD M +     DGV++  L+   +  G++ Q 
Sbjct: 70  MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQS 125

Query: 583 LKYFDSMSKEFG 594
           +K ++ M K  G
Sbjct: 126 VKAYNLMLKNDG 137


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/737 (38%), Positives = 426/737 (57%), Gaps = 30/737 (4%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM-RRGWHPDEYTFPFVLKACGELPSSRCG 154
           S  ++F WN L+    +    D A  L+ +M+   G  PD YTFP VL+ CG +P    G
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARG 215

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH  +   G++ ++ V NAL+ MY +C  +  AR LFD M +    DI+SWN +++ Y
Sbjct: 216 KEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRR---DIISWNAMISGY 272

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            ++G    GL LF  M G + V  D ++L + +SAC  LG    G+       A  +   
Sbjct: 273 FENGMCHEGLELFFAMRG-LSVDPDLMTLTSVISACELLGDRRLGRDI----HAYVITTG 327

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
             V D+   N++   Y   GS+ +A  LF +M ++++    V+W+ +I+GY       +A
Sbjct: 328 FAV-DISVCNSLTQMYLNAGSWREAEKLFSRMERKDI----VSWTTMISGYEYNFLPDKA 382

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-RVLSVDGSHPDDLMV 393
           +D +R M    ++P+ +T+ ++LS CA++G L  G E H   IK R++S        ++V
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY-------VIV 435

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            N LI+MY+KCK +D A  +F  I  KN  V +WT +I     N    +AL    QM   
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKN--VISWTSIIAGLRLNNRCFEALIFLRQM--- 490

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              ++PNA TL+ AL ACAR+ AL  G++IHA+VLR     L  F+ N L+DMY R G +
Sbjct: 491 KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVG-LDDFLPNALLDMYVRCGRM 549

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           +TA   F N ++++V SW  L+TGY   G G      FD+M K  + PD +TF+ LL  C
Sbjct: 550 NTAWSQF-NSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGC 608

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           S S MV QGL YF  M +++G++   +HYAC+VDLLGRA  L EA + I+ MP+ P P +
Sbjct: 609 SKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAV 667

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W ALLN CRIH  ++LGEL+A  + EL+ +  G Y LL N+YA+ G+W++VA++R +MK 
Sbjct: 668 WGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKE 727

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            G+    GCSWV+ K     F   D+ HPQ+++I  +L G  +++  +G    +  +  D
Sbjct: 728 NGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMD 787

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
             +  + ++   HSE+ A+A+G++ T PG PI +TKNL +C +CH  + FIS  +  EI 
Sbjct: 788 ETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREIS 847

Query: 814 LRDSNRFHHFKEGSCTC 830
           +RD+  FHHFK+G C+C
Sbjct: 848 VRDAEHFHHFKDGECSC 864



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 191/386 (49%), Gaps = 55/386 (14%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G + +A  VF +M  +++ SWN +V GY++ G F++A  L+ +M           W    
Sbjct: 143 GNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRM----------LWVG-- 190

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                                 G++P+V T   +L  C  +  L  GKE H + ++    
Sbjct: 191 ----------------------GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY--- 225

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
               +  D+ V+NALI MY KC  V  AR++FD + P+ RD+ +W  MI  Y +NG  ++
Sbjct: 226 ---GYELDIDVVNALITMYVKCGDVKSARLLFDRM-PR-RDIISWNAMISGYFENGMCHE 280

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
            L LF  M  +   V P+  TL+  + AC  L   R GR IHAYV+   + + I  V N 
Sbjct: 281 GLELFFAM--RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS-VCNS 337

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L  MY  +G    A  +F  ++++++VSWT++++GY  + L DKA   +  M ++ + PD
Sbjct: 338 LTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPD 397

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI----VDLLGRANRLDEA 618
            +T   +L AC+  G +D G++       +  I AR   Y  +    +++  +   +D+A
Sbjct: 398 EITVAAVLSACATLGDLDTGVEL-----HKLAIKARLISYVIVANNLINMYSKCKCIDKA 452

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIH 644
           +++   +P     I W +++ G R++
Sbjct: 453 LDIFHNIP-RKNVISWTSIIAGLRLN 477



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 132/256 (51%), Gaps = 10/256 (3%)

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           + G    G   EA+ +   MQ   +  +    V+L+  C    A   G + +   +  + 
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
           S+       + + NA + M+ +  ++  A  +F  ++ +N  + +W V++G Y++ G  +
Sbjct: 126 SLG------VELGNAFLAMFVRFGNLVDAWYVFGKMSERN--LFSWNVLVGGYAKQGYFD 177

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A+ L+ +M      VKP+ +T  C L  C  +  L  G+++H +V+R  YE+ I  V N
Sbjct: 178 EAMCLYHRMLWVGG-VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDID-VVN 235

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI MY + GD+ +AR++FD + +R+++SW ++++GY  +G+  +    F  MR   + P
Sbjct: 236 ALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDP 295

Query: 562 DGVTFLVLLYACSHSG 577
           D +T   ++ AC   G
Sbjct: 296 DLMTLTSVISACELLG 311



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 123/318 (38%), Gaps = 43/318 (13%)

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +A+ L   M +    V  + F     L  C    A   G ++++  L +   + +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRL--CEWKRAQEEGSKVYSIALSSMSSLGV 129

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR- 555
             + N  + M+ R G++  A  VF  + +RN+ SW  L+ GY   G  D+A   + +M  
Sbjct: 130 E-LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLW 188

Query: 556 KEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKY-FDSMSKEFGISARAEHYA 603
             G+ PD  TF  +L  C            H  +V  G +   D ++    +  +     
Sbjct: 189 VGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 248

Query: 604 CIVDLLGRANRLD------------------EAVEL---IEGMPMEPTPIIWVALLNGCR 642
               L  R  R D                  E +EL   + G+ ++P  +   ++++ C 
Sbjct: 249 SARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACE 308

Query: 643 IHANVELGELAANRLLELESEKDGSY-TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           +  +  LG      ++      D S    L+ +Y NAG W++  ++ S M+   +     
Sbjct: 309 LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDI----- 363

Query: 702 CSWVQGKEGTATFFVGDR 719
            SW     G    F+ D+
Sbjct: 364 VSWTTMISGYEYNFLPDK 381


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 291/907 (32%), Positives = 449/907 (49%), Gaps = 115/907 (12%)

Query: 26   IKLFSVTTTPCIKITSLLLRQCK----SLTQVYLIHQQIIVQNL--THVPPSHLIAAYVS 79
            +++ S   TP     S +L  C+    +   V  IH +I+ Q L  + V  + LI  Y  
Sbjct: 175  VRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSR 234

Query: 80   HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
            +     A  +   +     S   W A+I    +      A RLF  M   G  P  Y F 
Sbjct: 235  NGFVDLARRVFDGLRLKDHSS--WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 292

Query: 140  FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
             VL AC ++ S   G  +H ++   GF S+ +VCNAL+++Y     L  A  +F  M Q 
Sbjct: 293  SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 352

Query: 200  GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
               D V++NT++   +Q G  E  + LF RM  D  ++ D  +L + + AC++ GT  RG
Sbjct: 353  ---DAVTYNTLINGLSQCGYGEKAMELFKRMHLD-GLEPDSNTLASLVVACSADGTLFRG 408

Query: 260  KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS-- 291
            +Q                          C  +E A   F   +V++VV WN M+  Y   
Sbjct: 409  QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468

Query: 292  ---------------------------------RIGSFEDAFALFKKMRQENVKLN---- 314
                                             R+G  E    +  ++ + N +LN    
Sbjct: 469  DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVC 528

Query: 315  ---------------------------VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
                                       VV+W+ +IAGY Q     +AL  FRQM   G+ 
Sbjct: 529  SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIR 588

Query: 348  PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
             + V L + +S CA + AL  G++ H        S       DL   NAL+ +Y++C  +
Sbjct: 589  SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS------SDLPFQNALVTLYSRCGKI 642

Query: 408  DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
            + + + F+       D   W  ++  + Q+G   +AL +F +M ++   +  N FT   A
Sbjct: 643  EESYLAFEQTEAG--DNIAWNALVSGFQQSGNNEEALRVFVRMNREG--IDNNNFTFGSA 698

Query: 468  LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
            + A +  A ++ G+Q+HA + +  Y+     V N LI MY++ G I  A   F  +  +N
Sbjct: 699  VKAASETANMKQGKQVHAVITKTGYDSETE-VCNALISMYAKCGSISDAEKQFLEVSTKN 757

Query: 528  VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             VSW +++  Y  HG G +A  +FDQM    + P+ VT + +L ACSH G+VD+G+ YF+
Sbjct: 758  EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817

Query: 588  SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            SM+ E+G+S + EHY C+VD+L RA  L  A E I+ MP++P  ++W  LL+ C +H N+
Sbjct: 818  SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 877

Query: 648  ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
            E+GE AA+ LLELE E   +Y LLSN+YA + +W      R  MK  GVKK PG SW++ 
Sbjct: 878  EIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937

Query: 708  KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
            K    +F+VGD+ HP + +I+E    L +R   +GYV      L+++  E+K  ++F HS
Sbjct: 938  KNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHS 997

Query: 768  EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
            EKLA+++G+L+     PI + KNLR+C DCH+ I F+S + N EII+RD+ RFHHF+ G+
Sbjct: 998  EKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGA 1057

Query: 828  CTCKGYW 834
            C+CK YW
Sbjct: 1058 CSCKDYW 1064



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 154/551 (27%), Positives = 267/551 (48%), Gaps = 27/551 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSV 157
           ++F WN +I+      L    F LF++M+     P+E TF  VL+AC G   +      +
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA I   G   +  VCN L+ +Y+R   +  AR++FD +    + D  SW  +++  +++
Sbjct: 210 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL---RLKDHSSWVAMISGLSKN 266

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
                 + LF  M   + +     +  + LSAC  + +   G+Q   +     V +    
Sbjct: 267 ECEAEAIRLFCDMYV-LGIMPTPYAFSSVLSACKKIESLEIGEQLHGL-----VLKLGFS 320

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D    NA+V+ Y  +G+   A  +F  M Q     + VT++ +I G +Q G+G +A+++
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQR----DAVTYNTLINGLSQCGYGEKAMEL 376

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M   GLEP+  TL SL+  C++ G L  G++ H YT K   + +        +  AL
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK------IEGAL 430

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +++YAKC  ++ A   F  +  +  +V  W VM+ +Y       ++  +F QM  Q + +
Sbjct: 431 LNLYAKCADIETALDYF--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM--QIEEI 486

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            PN +T    L  C RL  L  G QIH+ +++  ++ L  +V + LIDMY++ G +DTA 
Sbjct: 487 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ-LNAYVCSVLIDMYAKLGKLDTAW 545

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +      ++VVSWT+++ GY  +   DKA   F QM   G+  D V     + AC+   
Sbjct: 546 DILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 605

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            + +G +   + +   G S+       +V L  R  +++E+    E        I W AL
Sbjct: 606 ALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNAL 663

Query: 638 LNGCRIHANVE 648
           ++G +   N E
Sbjct: 664 VSGFQQSGNNE 674



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 234/507 (46%), Gaps = 49/507 (9%)

Query: 129 RGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           RG  P+  T  ++L+ C +   S   G  +H+ I   G DSN  +   L   Y     L 
Sbjct: 78  RGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLY 137

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            A ++FDEM +     I +WN ++   A          LF RM  +     +G +    L
Sbjct: 138 GAFKVFDEMPER---TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEG-TFSGVL 193

Query: 248 SACASLGTWSRGKQCG--MMEE--AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
            AC       RG      ++E+  A+ +++ ++   VV  N ++  YSR G  + A  +F
Sbjct: 194 EAC-------RGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVF 245

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
             +R ++      +W A+I+G ++     EA+ +F  M   G+ P      S+LS C  +
Sbjct: 246 DGLRLKDHS----SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 301

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
            +L +G++ H   +K   S       D  V NAL+ +Y    ++  A  +F  ++   RD
Sbjct: 302 ESLEIGEQLHGLVLKLGFS------SDTYVCNALVSLYFHLGNLISAEHIFSNMS--QRD 353

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
             T+  +I   SQ G    A+ LF +M   D L +P++ TL+  ++AC+    L  G+Q+
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRM-HLDGL-EPDSNTLASLVVACSADGTLFRGQQL 411

Query: 484 HAYVLRNQYEMLIPFVAN-----CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
           HAY  +      + F +N      L+++Y++  DI+TA   F   +  NVV W  ++  Y
Sbjct: 412 HAYTTK------LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISA 597
           G+      +   F QM+ E + P+  T+  +L  C   G ++ G +    + K  F ++A
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 598 RAEHYAC--IVDLLGRANRLDEAVELI 622
               Y C  ++D+  +  +LD A +++
Sbjct: 526 ----YVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 185/404 (45%), Gaps = 57/404 (14%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A KVF+ M  + + +WN M+   +      + F LF +M  ENV  N  T+S V+
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
              A RG G  A DV  Q+                               H   + + L 
Sbjct: 194 E--ACRG-GSVAFDVVEQI-------------------------------HARILYQGLR 219

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                 D  +V N LID+Y++   VD+AR +FD +  K  D ++W  MI   S+N    +
Sbjct: 220 ------DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK--DHSSWVAMISGLSKNECEAE 271

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ LF  M+    +  P AF  S  L AC ++ +L  G Q+H  VL+  +     +V N 
Sbjct: 272 AIRLFCDMYVLGIMPTPYAF--SSVLSACKKIESLEIGEQLHGLVLKLGFSS-DTYVCNA 328

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ +Y   G++ +A  +F N+ QR+ V++ +L+ G    G G+KA   F +M  +GL PD
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 388

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
             T   L+ ACS  G + +G +   + + + G ++  +    +++L  +   ++ A++  
Sbjct: 389 SNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query: 623 EGMPMEPTPIIWVALL----------NGCRIHANVELGELAANR 656
               +E   ++W  +L          N  RI   +++ E+  N+
Sbjct: 448 LETEVENV-VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 31/203 (15%)

Query: 453 QDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +++ ++PN  TL   L  C +   +L  GR++H+ +L+   +     ++  L D Y   G
Sbjct: 76  ENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDS-NGCLSEKLFDFYLFKG 134

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           D+  A  VFD + +R + +W  ++       L  +    F +M  E + P+  TF  +L 
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194

Query: 572 ACS------------HSGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDE 617
           AC             H+ ++ QGL              R     C  ++DL  R   +D 
Sbjct: 195 ACRGGSVAFDVVEQIHARILYQGL--------------RDSTVVCNPLIDLYSRNGFVDL 240

Query: 618 AVELIEGMPMEPTPIIWVALLNG 640
           A  + +G+ ++     WVA+++G
Sbjct: 241 ARRVFDGLRLKDHS-SWVAMISG 262


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/747 (36%), Positives = 426/747 (57%), Gaps = 30/747 (4%)

Query: 88   SLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
            ++LQR   S      +N+LI    +    D A  LF +M      PD  T   +L AC  
Sbjct: 331  AMLQRDEVS------YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSS 384

Query: 148  LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
            + +   G   H+    +G  S++ +  AL+ +Y +C  +  A + F         ++V W
Sbjct: 385  VGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF---LSTETENVVLW 441

Query: 208  NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
            N ++ AY    +      +F +M  +  ++ +  +  + L  C+SL     G+Q      
Sbjct: 442  NVMLVAYGLLDNLNESFKIFTQMQME-GIEPNQFTYPSILRTCSSLRAVDLGEQI----- 495

Query: 268  AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              +V +     +V   + ++  Y+++G  + A  +F+++++++V    V+W+A+IAGYAQ
Sbjct: 496  HTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV----VSWTAMIAGYAQ 551

Query: 328  RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                 EAL++F++MQ  G+  + +   S +S CA + AL  G++ H         V G +
Sbjct: 552  HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQA-----CVSG-Y 605

Query: 388  PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             DDL V NAL+ +YA+C  V  A   FD I  K  D  +W  +I  ++Q+G   +AL+LF
Sbjct: 606  SDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK--DNISWNSLISGFAQSGHCEEALSLF 663

Query: 448  PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
             QM +  + +  N+FT   A+ A A +A ++ G+QIHA +++  ++     V+N LI +Y
Sbjct: 664  SQMSKAGQEI--NSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETE-VSNVLITLY 720

Query: 508  SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
            ++ G+ID A   F  + ++N +SW +++TGY  HG G KA   F+ M++ G+ P+ VTF+
Sbjct: 721  AKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFV 780

Query: 568  VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
             +L ACSH G+VD+G+KYF SM +  G+  + EHYAC+VDLLGR+  L  A   +E MP+
Sbjct: 781  GVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPI 840

Query: 628  EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
            +P  ++   LL+ C +H N+++GE AA+ LLELE +   +Y LLSN+YA  G+W    R 
Sbjct: 841  QPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRT 900

Query: 688  RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
            R +MK  GVKK PG SW++       FF GD+ HP   KIYE L  L +     GY+PQT
Sbjct: 901  RQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQT 960

Query: 748  SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
            +  L+D +  +KG     HSEKLA+A+G+L+ +  TPI + KNLR+CGDCH+ I ++S I
Sbjct: 961  NSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKI 1020

Query: 808  INHEIILRDSNRFHHFKEGSCTCKGYW 834
             +  I++RDS RFHHFK G C+CK YW
Sbjct: 1021 SDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 161/512 (31%), Positives = 283/512 (55%), Gaps = 29/512 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y++      A+++   +   P S   WN ++ R V  ++      LF +M++    
Sbjct: 109 LMDLYIAFGDLDGAVTVFDEMPVRPLSC--WNKVLHRFVAGKMAGRVLGLFRRMLQEKVK 166

Query: 133 PDEYTFPFVLKACG--ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           PDE T+  VL+ CG  ++P   C   +HA   + G+++++FVCN L+ +Y +   L+ A+
Sbjct: 167 PDERTYAGVLRGCGGGDVPF-HCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAK 225

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD + +    D VSW  +++  +QSG  E  ++LF +M     V        + LSAC
Sbjct: 226 KVFDGLQKR---DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTS-GVYPTPYIFSSVLSAC 281

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
             +  +  G+Q   +     V ++    +    NA+VT YSR+G+F  A  +F  M Q +
Sbjct: 282 TKVEFYKVGEQLHGL-----VLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRD 336

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
                V+++++I+G +Q+G+  +AL++F++M    L+P+ VT+ SLLS C+SVGALL+GK
Sbjct: 337 E----VSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGK 392

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           + H Y IK  +S       D+++  AL+D+Y KC  +  A   F  ++ +  +V  W VM
Sbjct: 393 QFHSYAIKAGMS------SDIILEGALLDLYVKCSDIKTAHEFF--LSTETENVVLWNVM 444

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           + +Y      N++  +F QM  Q + ++PN FT    L  C+ L A+  G QIH  VL+ 
Sbjct: 445 LVAYGLLDNLNESFKIFTQM--QMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT 502

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
            ++  + +V++ LIDMY++ G +D A  +F  LK+++VVSWT+++ GY  H    +A   
Sbjct: 503 GFQFNV-YVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNL 561

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           F +M+ +G+  D + F   + AC+    ++QG
Sbjct: 562 FKEMQDQGIHSDNIGFASAISACAGIQALNQG 593


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/660 (37%), Positives = 392/660 (59%), Gaps = 26/660 (3%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           ++++Y     L  A  +F  +  P    +++W +++  +         L  F  M    +
Sbjct: 45  VISIYTNLKLLHEALLVFKTLESP---PVLAWKSVIRCFTDQSLFSRALASFVEMRASGR 101

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIG 294
                V   + L +C  +     G      E       R+ +  D+ + NA++  YS++ 
Sbjct: 102 CPDHNV-FPSVLKSCTMMMDLRFG------ESVHGFIVRLGMDCDLYTGNALMNMYSKLL 154

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             +    +F+ M +++V    V+++ VIAGYAQ G   +AL + R+M    L+P+  TL 
Sbjct: 155 GIDSVRKVFELMPRKDV----VSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLS 210

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L   +    +L GKE H Y I++ +        D+ + ++L+DMYAK   ++ +  +F
Sbjct: 211 SVLPIFSEYVDVLKGKEIHGYVIRKGID------SDVYIGSSLVDMYAKSARIEDSERVF 264

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             +    RD  +W  ++  Y QNG  N+AL LF QM      V+P A   S  + ACA L
Sbjct: 265 SHLY--RRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAK--VRPGAVAFSSVIPACAHL 320

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           A L  G+Q+H YVLR  +   I F+A+ L+DMYS+ G+I  AR +FD +   + VSWT++
Sbjct: 321 ATLHLGKQLHGYVLRGGFGRNI-FIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAI 379

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + G+ +HG G +A   F++M+++G+ P+ V F+ +L ACSH G+VD+   YF+SM+K +G
Sbjct: 380 IMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYG 439

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           ++   EHYA + DLLGRA +L+EA + I  M +EPT  +W  LL+ C +H N+EL E  A
Sbjct: 440 LNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVA 499

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            ++  ++SE  G+Y L+ N+YA+ GRWK++A++R  ++  G++K+P CSW++ K  T  F
Sbjct: 500 EKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGF 559

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
             GDR+HP   +I E L  ++++++  GYV  TS  LHDVD+E K +LLF HSE+LA+A+
Sbjct: 560 VSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAF 619

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GI+ T PGT IR+TKN+RIC DCH AI FIS I   EII+RD++RFHHF  GSC+C  YW
Sbjct: 620 GIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 235/529 (44%), Gaps = 89/529 (16%)

Query: 46  QCKSLTQVYLIHQQII-VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           + KS +Q   +H Q I  Q+L+H   S +I+ Y +      AL + + +   P  V  W 
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPP--VLAWK 74

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ++IR      L   A   F++M   G  PD   FP VLK+C  +   R G SVH  I   
Sbjct: 75  SVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G D +++  NALM MY++   +   R++F+ M +    D+VS+NT++A YAQSG  E  L
Sbjct: 135 GMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRK---DVVSYNTVIAGYAQSGMYEDAL 191

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------------- 261
            +   M G   ++ D  +L + L   +      +GK+                       
Sbjct: 192 RMVREM-GTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250

Query: 262 ---CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
                 +E++++VF  +  +D +SWN++V GY + G + +A  LF++M    V+      
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVR------ 304

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
                                        P  V   S++  CA +  L LGK+ H Y ++
Sbjct: 305 -----------------------------PGAVAFSSVIPACAHLATLHLGKQLHGYVLR 335

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                 G    ++ + +AL+DMY+KC ++  AR +FD +     D  +WT +I  ++ +G
Sbjct: 336 ------GGFGRNIFIASALVDMYSKCGNIQAARKIFDRM--NLHDEVSWTAIIMGHALHG 387

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAYVLRNQYE 493
             ++A++LF +M +Q   VKPN       L AC+ +  +      F      Y L  + E
Sbjct: 388 HGHEAVSLFEEMKRQG--VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 445

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
                    + D+  R+G ++ A      ++     S W++L++   +H
Sbjct: 446 HYA-----AVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH 489



 Score = 43.1 bits (100), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
           R+ +    +Q+HA  +R Q   L    A+ +I +Y+    +  A +VF  L+   V++W 
Sbjct: 17  RIKSKSQAKQLHAQFIRTQ--SLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWK 74

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           S++  +    L  +A  +F +MR  G  PD   F  +L +C+
Sbjct: 75  SVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCT 116


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 300/798 (37%), Positives = 441/798 (55%), Gaps = 60/798 (7%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  YV       A  L   +S    ++  W  LI    +   PD A   F  M+R G+ 
Sbjct: 140 LINIYVRIGDLGSAQKLFDEMSNR--NLVTWACLISGYTQNGKPDEACARFRDMVRAGFI 197

Query: 133 PDEYTFPFVLKACGELPSSRC--GSSVHAVICSSGFDSNVFVCNALMAMYARC-DTLSYA 189
           P+ Y F   L+AC E   S C  G  +H +I  + + S+V VCN L++MY  C D+ + A
Sbjct: 198 PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDA 257

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV--NAL 247
           R +FD +   GI + +SWN+I++ Y++ GDA     LF+ M    + +G G S    +A 
Sbjct: 258 RSVFDGI---GIRNSISWNSIISVYSRRGDAVSAYDLFSSM----QKEGLGFSFKPNDAF 310

Query: 248 SACASLGTWSR-GKQC---------------------------GMMEEAKKVFERMKVKD 279
           S  + L    R G++                            G + +A  VFE M  KD
Sbjct: 311 SEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKD 370

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGHEALDVF 338
            VSWN++++G  +    EDA  +F  M +     + V+W++VI   +       +A+  F
Sbjct: 371 SVSWNSLISGLDQNECSEDAAEMFSLMPE----YDQVSWNSVIGALSDSEASVSQAVKYF 426

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM   G   + VT +++LS  +S+    +  + H   +K  LS      DD  + NAL+
Sbjct: 427 LQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLS------DDTAIGNALL 480

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             Y KC  ++    +F A   + RD  +W  MI  Y  N   + A+ L   M Q+ +  +
Sbjct: 481 SCYGKCGEMNECEKIF-ARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQ--R 537

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            ++FT +  L ACA +A L  G ++HA  +R   E  +  V + L+DMYS+ G ID A  
Sbjct: 538 LDSFTFATILSACASVATLERGMEVHACGIRACLESDV-VVGSALVDMYSKCGRIDYASR 596

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F+ +  RNV SW S+++GY  HG G+KA   F +M  +G  PD VTF+ +L ACSH G 
Sbjct: 597 FFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGF 656

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G ++F SMS+ + +S R EH++C+VDLLGRA +LDE  + I  MPM+P  +IW  +L
Sbjct: 657 VEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL 716

Query: 639 NG-CRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
              CR +  N ELG  AA  LLELE +   +Y LL+N+YA+  +W+DVA+ R+ MK   V
Sbjct: 717 GACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAV 776

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK  GCSWV  K+G   F  GD+ HP+   IY+ L  L ++++  GY+PQT +AL D++ 
Sbjct: 777 KKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLEL 836

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K +LL  HSEK+A+A+ +LT     PIRI KNLR+CGDCHSA  +IS I+  +I+LRD
Sbjct: 837 ENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRD 895

Query: 817 SNRFHHFKEGSCTCKGYW 834
           SNRFHHF++G C+C  YW
Sbjct: 896 SNRFHHFEDGKCSCGDYW 913



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 234/526 (44%), Gaps = 73/526 (13%)

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           GF  N+F+ N L+ +Y R   L  A++LFDEM      ++V+W  +++ Y Q+G  +   
Sbjct: 129 GFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNR---NLVTWACLISGYTQNGKPDEAC 185

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSW 283
             F  M     +  +  +  +AL AC   G       C +  +   +  + +   DVV  
Sbjct: 186 ARFRDMVRAGFIP-NHYAFGSALRACQESGP----SGCKLGVQIHGLISKTRYGSDVVVC 240

Query: 284 NAMVTGY-SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           N +++ Y S + S  DA ++F  +       N ++W+++I+ Y++RG    A D+F  MQ
Sbjct: 241 NVLISMYGSCLDSANDARSVFDGIGIR----NSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 343 FCGL----EPN-VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
             GL    +PN   +  S+L           G+E H + I+      G + + + + N L
Sbjct: 297 KEGLGFSFKPNDAFSEFSVLE-----EGRRKGREVHAHVIR-----TGLNDNKVAIGNGL 346

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL- 456
           ++MYAK  ++  A  +F+ +  K  D  +W  +I    QN  + DA  +F  M + D++ 
Sbjct: 347 VNMYAKSGAIADACSVFELMVEK--DSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVS 404

Query: 457 -------VKPNAFTLSCA----------------------LMACARLAALRFGRQIHAYV 487
                  +  +  ++S A                      L A + L+      QIHA V
Sbjct: 405 WNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALV 464

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-RNVVSWTSLMTGYGMHGLGDK 546
           L+         + N L+  Y + G+++    +F  + + R+ VSW S+++GY  + L  K
Sbjct: 465 LKYCLSDDTA-IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHK 523

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY---- 602
           A      M ++G   D  TF  +L AC+    +++G++         GI A  E      
Sbjct: 524 AMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEV-----HACGIRACLESDVVVG 578

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           + +VD+  +  R+D A    E MP+      W ++++G   H + E
Sbjct: 579 SALVDMYSKCGRIDYASRFFELMPLRNV-YSWNSMISGYARHGHGE 623


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/558 (42%), Positives = 355/558 (63%), Gaps = 15/558 (2%)

Query: 277  VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            +++++  N +V  YS   + +DA+ LF  M       + V+WS ++ G+A+ G       
Sbjct: 767  LQNLIVANKLVXFYSYYRALDDAYGLFDGM----CVRDSVSWSVMVGGFAKVGDYMNCFG 822

Query: 337  VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
             FR++  CG  P+  TL  ++  C  +  L +G+  H    K  L +D        V  A
Sbjct: 823  TFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDH------FVCAA 876

Query: 397  LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
            L+DMY KC+ ++ AR +FD +    RD+ TWTVMIG Y++ G AN++L LF +M ++   
Sbjct: 877  LVDMYGKCREIEDARFLFDKMX--ERDLVTWTVMIGGYAECGNANESLVLFDKMREEG-- 932

Query: 457  VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            V P+   +   + ACA+L A+   R I  Y+ R ++++ +  +   +IDM+++ G +++A
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV-ILGTAMIDMHAKCGCVESA 991

Query: 517  RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
            R +FD ++++NV+SW++++  YG HG G KA   F  M + G+ P+ +T + LLYACSH+
Sbjct: 992  REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 1051

Query: 577  GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
            G+V++GL++F  M +++ +    +HY C+VDLLGRA RLDEA++LI  M  E    +W A
Sbjct: 1052 GLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGA 1111

Query: 637  LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
             L  CR H +V L E AA  LLEL+ +  G Y LLSNIYANAGRW+DVA+IR LM    +
Sbjct: 1112 FLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRL 1171

Query: 697  KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
            KK PG +W++    +  F VGD THP+S++IYE+L  L  +++ +GYVP T+F LHDVD+
Sbjct: 1172 KKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDE 1231

Query: 757  EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
            E K  +L+ HSEKLA+A+G++ T   TPIRI KNLR+CGDCH+    +S I    II+RD
Sbjct: 1232 ELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRD 1291

Query: 817  SNRFHHFKEGSCTCKGYW 834
            +NRFHHFKEG+C+C  YW
Sbjct: 1292 ANRFHHFKEGACSCGDYW 1309



 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/516 (41%), Positives = 327/516 (63%), Gaps = 15/516 (2%)

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           ++++V  N ++  YS   + +DA+ LF  M       + V+WS ++ G+A+ G       
Sbjct: 91  LENIVVANKLIYFYSYYRALDDAYGLFDGM----CVRDSVSWSVMVGGFAKVGDYINCFG 146

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            FR++  CG  P+  TL  ++  C  +  L +G+  H    K  L +D        V  A
Sbjct: 147 TFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDH------FVCAA 200

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY KC+ ++ AR +FD +  + RD+ TWTVMIG Y++ G AN++L LF +M ++   
Sbjct: 201 LVDMYVKCREIEDARFLFDKM--QERDLVTWTVMIGGYAECGKANESLVLFEKMREEG-- 256

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V P+   +   + ACA+L A+   R I  Y+ R ++++ +  +   +IDMY++ G +++A
Sbjct: 257 VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV-ILGTAMIDMYAKCGCVESA 315

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +FD ++++NV+SW++++  YG HG G KA   F  M   G+ PD +T   LLYACSH+
Sbjct: 316 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHA 375

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++GL++F SM +++ +    +HY C+VDLLGRA RLDEA++LI+ M +E    +W A
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGA 435

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
            L  CR H +V L E AA  LLEL+S+  G Y LLSNIYANAGRW+DVA+IR LM    +
Sbjct: 436 FLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL 495

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG +W++    +  F VGD THP+S++IYE+L  L  +++ +GYVP T+F LHDVD+
Sbjct: 496 KKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDE 555

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
           E K  +L+ HSEKLA+A+G++ T   TPIRI KNLR
Sbjct: 556 ELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 200/406 (49%), Gaps = 33/406 (8%)

Query: 34  TPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQ 91
            P   I++L+   C++LTQV  +H Q  V  +    V  + LI  Y  + A   A  L  
Sbjct: 61  NPKFYISALV--NCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD 118

Query: 92  ----RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
               R S S      W+ ++    ++    N F  F +++R G  PD YT PFV++AC +
Sbjct: 119 GMCVRDSVS------WSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 172

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           L + + G  +H ++   G D + FVC AL+ MY +C  +  AR LFD+M +    D+V+W
Sbjct: 173 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQER---DLVTW 229

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
             ++  YA+ G A   L+LF +M  +  V  D V++V  + ACA LG   + +      +
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREE-GVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ 288

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
            KK F+     DV+   AM+  Y++ G  E A  +F +M ++    NV++WSA+IA Y  
Sbjct: 289 RKK-FQL----DVILGTAMIDMYAKCGCVESAREIFDRMEEK----NVISWSAMIAAYGY 339

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G G +ALD+F  M   G+ P+ +TL SLL  C+  G +  G           +  D S 
Sbjct: 340 HGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEG-----LRFFSSMWEDYSV 394

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             D+     ++D+  +   +D A  +  ++  + +D   W   +G+
Sbjct: 395 RTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIE-KDEGLWGAFLGA 439



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 194/391 (49%), Gaps = 31/391 (7%)

Query: 49   SLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQ----RISPSPFSVFW 102
            +LTQV  +H Q  V  +    +  + L+  Y  + A   A  L      R S S      
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVS------ 803

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            W+ ++    ++    N F  F +++R G  PD YT PFV++AC +L + + G  +H ++ 
Sbjct: 804  WSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVY 863

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              G D + FVC AL+ MY +C  +  AR LFD+M +    D+V+W  ++  YA+ G+A  
Sbjct: 864  KFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXER---DLVTWTVMIGGYAECGNANE 920

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             L+LF +M  +  V  D V++V  + ACA LG   + +      + KK F+     DV+ 
Sbjct: 921  SLVLFDKMREE-GVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK-FQL----DVIL 974

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              AM+  +++ G  E A  +F +M ++    NV++WSA+IA Y   G G +ALD+F  M 
Sbjct: 975  GTAMIDMHAKCGCVESAREIFDRMEEK----NVISWSAMIAAYGYHGQGRKALDLFPMML 1030

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              G+ PN +TLVSLL  C+  G +  G           +  D S   D+     ++D+  
Sbjct: 1031 RSGILPNKITLVSLLYACSHAGLVEEG-----LRFFSXMWEDYSVRXDVKHYTCVVDLLG 1085

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            +   +D A  +  ++  + +D   W   +G+
Sbjct: 1086 RAGRLDEALKLIXSMTXE-KDEGLWGAFLGA 1115


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/721 (36%), Positives = 403/721 (55%), Gaps = 70/721 (9%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
            +L+A YA    L  A   FD + Q    D V  N +++AYA++  A   + +F  +   
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQ-ARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 234 VKVQGDGVSLVNALSA----------------CASLGTWSRG------------KQCGMM 265
             ++ D  S    LSA                C+ L + + G             +C  +
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 266 E---EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           E   +A+KV + M  KD ++W  MV GY R G    A ++F+++   +VK +VV W+A+I
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEV---DVKFDVV-WNAMI 266

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +GY   G   EA ++FR+M    +  +  T  S+LS CA+ G    GK  H    +  L 
Sbjct: 267 SGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITR--LQ 324

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------------- 421
            +      L V NAL+ +Y+KC ++ VAR +FD +  K+                     
Sbjct: 325 PNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAV 384

Query: 422 --------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
                   ++  +W VM+  Y   G + DAL LF +M  +D  VKP  +T + A+ AC  
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED--VKPCDYTYAGAISACGE 442

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L +L+ G+Q+H ++++  +E       N LI MY+R G +  A ++F  +   + VSW +
Sbjct: 443 LGSLKHGKQLHGHLVQLGFEGSNS-AGNALITMYARCGAVKEANLMFLVMPNIDSVSWNA 501

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++  G HG G +A   FD+M  EG+ PD ++FL +L AC+HSG+VD+G +YF+SM ++F
Sbjct: 502 MISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDF 561

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    +HY  ++DLLGRA R+ EA +LI+ MP EPTP IW A+L+GCR   ++ELG  A
Sbjct: 562 GIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHA 621

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A++L ++  + DG+Y LLSN Y+ AGRW D AR+R LM+  GVKK PGCSW++       
Sbjct: 622 ADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHV 681

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F VGD  HP++ K+Y+ L  +  R++ +GYVP T   LHD++  +K  +LF HSE+LA+ 
Sbjct: 682 FVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVG 741

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+L   PG  + + KNLRIC DCH+ + F+S  +  EI++RD  RFHHFK+G C+C  Y
Sbjct: 742 FGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNY 801

Query: 834 W 834
           W
Sbjct: 802 W 802


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/746 (36%), Positives = 410/746 (54%), Gaps = 73/746 (9%)

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI--- 201
           C  L   R    +H  I  +  +  +F+ N L++ YA+ D ++YAR++FD+M Q  +   
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 202 -----------C--------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
                      C              D+VSWN++++AYA  G     +  +  M  +   
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 237 QGDGVSLVNAL-----SACASLGTWSRG---------------------KQCGMMEEAKK 270
             + ++L   L       C  LG    G                      + G++  A++
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
            F+ M  K+VV +N ++ G  R    ED+  LF  M++++     ++W+A+IAG+ Q G 
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDS----ISWTAMIAGFTQNGL 254

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
             EA+D+FR+M+   LE +  T  S+L+ C  V AL  GK+ H Y I+        + D+
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT------DYQDN 308

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           + V +AL+DMY KCKS+  A  +F  +  KN  V +WT M+  Y QNG + +A+ +F  M
Sbjct: 309 IFVGSALVDMYCKCKSIKSAETVFRKMNCKN--VVSWTAMLVGYGQNGYSEEAVKIFCDM 366

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--VANCLIDMYS 508
             Q+  ++P+ FTL   + +CA LA+L  G Q H   L +    LI F  V+N L+ +Y 
Sbjct: 367 --QNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG---LISFITVSNALVTLYG 421

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G I+ +  +F  +   + VSWT+L++GY   G  ++    F+ M   G  PD VTF+ 
Sbjct: 422 KCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIG 481

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L ACS +G+V +G + F+SM KE  I    +HY C++DL  RA RL+EA + I  MP  
Sbjct: 482 VLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFS 541

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           P  I W +LL+ CR H N+E+G+ AA  LL+LE     SY LLS+IYA  G+W++VA +R
Sbjct: 542 PDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLR 601

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
             M+  G++K PGCSW++ K     F   D+++P S +IY  L  L  ++   GYVP  +
Sbjct: 602 KGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMN 661

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
             LHDVDD EK  +L  HSEKLA+A+G++   PG PIR+ KNLR+CGDCH+A  +IS I 
Sbjct: 662 SVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKIT 721

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
             EI++RD+ RFH FK+G C+C  +W
Sbjct: 722 QREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 173/337 (51%), Gaps = 31/337 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I    +  L   A  LF +M       D+YTF  VL ACG + + + G  VHA I 
Sbjct: 242 WTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYII 301

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + +  N+FV +AL+ MY +C ++  A  +F +M      ++VSW  ++  Y Q+G +E 
Sbjct: 302 RTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKM---NCKNVVSWTAMLVGYGQNGYSEE 358

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + +F  M  +  ++ D  +L + +S+CA+L +         +EE  +   R  V  ++S
Sbjct: 359 AVKIFCDMQNN-GIEPDDFTLGSVISSCANLAS---------LEEGAQFHCRALVSGLIS 408

Query: 283 W----NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +    NA+VT Y + GS ED+  LF +M      ++ V+W+A+++GYAQ G  +E L +F
Sbjct: 409 FITVSNALVTLYGKCGSIEDSHRLFSEMSY----VDEVSWTALVSGYAQFGKANETLRLF 464

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK--RVLSVDGSHPDDLMVINA 396
             M   G +P+ VT + +LS C+  G +  G +     IK  R++ ++  +         
Sbjct: 465 ESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHY-------TC 517

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           +ID++++   ++ AR   + + P + D   W  ++ S
Sbjct: 518 MIDLFSRAGRLEEARKFINKM-PFSPDAIGWASLLSS 553


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/763 (34%), Positives = 429/763 (56%), Gaps = 27/763 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y        AL + + +      V  WN+++   V+      A  LF  M   G+ 
Sbjct: 205 LIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFP 264

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            + YT   VL+ C EL     G  +HA +   G + N+  CNAL+ MYA+   +  A ++
Sbjct: 265 MNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI-QCNALLVMYAKYGRVDSALRV 323

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F ++ +    D +SWN++++ Y Q+      +  F  M      Q D   +V+  SA   
Sbjct: 324 FGQIAEK---DYISWNSMLSCYVQNSFYAEAIDFFGEMLQH-GFQPDHACVVSLSSALGH 379

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L   + G++      A  + +R+   D+   N ++  Y + GS E +  +F+ M   +  
Sbjct: 380 LSRLNNGREF----HAYAIKQRLHT-DLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH- 433

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              ++W+ ++A +AQ     EAL++  ++Q  G+  + + + S+L  C  + ++ L K+ 
Sbjct: 434 ---ISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQV 490

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HCY I+  L        DL++ N LID+Y +C   D +  +F  +  K  D+ +WT MI 
Sbjct: 491 HCYAIRNGLL-------DLILENRLIDIYGECGEFDHSLNLFQRVEKK--DIVSWTSMIN 541

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             + NG  N A+ LF +M  Q   ++P++  L   L+A A L++L  G+Q+H +++R  +
Sbjct: 542 CCTNNGRLNGAVFLFTEM--QKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNF 599

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
            +  P V++ L+DMYS  G ++ A  VF+  K ++VV WT+++   GMHG G +A   F 
Sbjct: 600 PIEGPVVSS-LVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFK 658

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M + GL PD V+FL LLYACSHS +V++G  Y D M  ++ +    EHYAC+VD+LGR+
Sbjct: 659 RMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRS 718

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            + +EA E I+ MPM+P   +W ALL  CR+H N  L  +AAN+LLELE +  G+Y L+S
Sbjct: 719 GQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVS 778

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N++A  G+W +    R+ M   G++K P CSW++      TF  GD  H  S+ I+  L+
Sbjct: 779 NVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLS 838

Query: 733 GLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
            + + + +  GYV  T F LHD  +EEK D+L +HSE++A+A+G+++T PG PIRI KNL
Sbjct: 839 EITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNL 898

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+CGDCH     +S +   +I++RD+NRFHHF  GSC+C+ +W
Sbjct: 899 RVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/552 (27%), Positives = 270/552 (48%), Gaps = 31/552 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR---GWHPDEYTFPFVLKACGELPSSRCGS 155
           +VF WNAL+   +       A R++  M      G  PD  T   VLKACG     RCG 
Sbjct: 125 TVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGG 184

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH +    G D +  V NAL+ MYA+C  L  A ++F E  Q    D+ SWN++V+   
Sbjct: 185 EVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVF-EWLQQDARDVASWNSVVSGCV 243

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           Q+G     L LF  M        +  + V  L  CA LG  S G+      E      + 
Sbjct: 244 QNGRTLEALALFRGMQ-SAGFPMNSYTSVAVLQVCAELGLLSLGR------ELHAALLKC 296

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             +  +  NA++  Y++ G  + A  +F ++ ++    + ++W+++++ Y Q     EA+
Sbjct: 297 GSELNIQCNALLVMYAKYGRVDSALRVFGQIAEK----DYISWNSMLSCYVQNSFYAEAI 352

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           D F +M   G +P+   +VSL S    +  L  G+E H Y IK+ L        DL V N
Sbjct: 353 DFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHT------DLQVGN 406

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            L+DMY KC S++ +  +F+++    RD  +WT ++  ++Q+   ++AL +  ++ ++  
Sbjct: 407 TLMDMYIKCGSIECSAKVFESMGI--RDHISWTTILACFAQSSRHSEALEMILELQKEGI 464

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           +V  ++  +   L  C  L ++   +Q+H Y +RN    LI  + N LID+Y   G+ D 
Sbjct: 465 MV--DSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLI--LENRLIDIYGECGEFDH 520

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           +  +F  ++++++VSWTS++     +G  + A + F +M+K  + PD V  + +L A + 
Sbjct: 521 SLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAG 580

Query: 576 SGMVDQGLKYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
              + +G +    +  + F I       + +VD+      ++ A+ + E    +   ++W
Sbjct: 581 LSSLTKGKQVHGFLIRRNFPIEGPV--VSSLVDMYSGCGSMNYAIRVFERAKCKDV-VLW 637

Query: 635 VALLNGCRIHAN 646
            A++N   +H +
Sbjct: 638 TAMINATGMHGH 649



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 236/499 (47%), Gaps = 42/499 (8%)

Query: 154 GSSVHAVICSSGF---DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
           G  VHA   ++G    D + F+   L+ MY RC  +  AR+LF+ M  P    + SWN +
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGM--PAR-TVFSWNAL 132

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQG--DGVSLVNALSACASLGTWSRGKQCGMMEEA 268
           V AY  SG A   + ++  M          DG +L + L AC + G      +CG     
Sbjct: 133 VGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGD----GRCGGEVHG 188

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
             V   +    +V+ NA++  Y++ G  + A  +F+ ++Q+    +V +W++V++G  Q 
Sbjct: 189 LAVKVGLDKSTLVA-NALIGMYAKCGLLDSALRVFEWLQQD--ARDVASWNSVVSGCVQN 245

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   EAL +FR MQ  G   N  T V++L  CA +G L LG+E H   +K      GS  
Sbjct: 246 GRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLK-----CGSEL 300

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           +  +  NAL+ MYAK   VD A  +F  IA K  D  +W  M+  Y QN    +A+  F 
Sbjct: 301 N--IQCNALLVMYAKYGRVDSALRVFGQIAEK--DYISWNSMLSCYVQNSFYAEAIDFFG 356

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M Q     +P+   +     A   L+ L  GR+ HAY ++ +    +  V N L+DMY 
Sbjct: 357 EMLQHG--FQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQ-VGNTLMDMYI 413

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G I+ +  VF+++  R+ +SWT+++  +       +A     +++KEG+  D +    
Sbjct: 414 KCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGS 473

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI-----VDLLGRANRLDEAVELIE 623
           +L  C        GLK    + +    + R      I     +D+ G     D ++ L +
Sbjct: 474 ILETCC-------GLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQ 526

Query: 624 GMPMEPTPII-WVALLNGC 641
              +E   I+ W +++N C
Sbjct: 527 --RVEKKDIVSWTSMINCC 543


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/716 (37%), Positives = 402/716 (56%), Gaps = 26/716 (3%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            + F+ M+      D+ TF  VL     L S   G  VH +    G D  + V N+L+ M
Sbjct: 307 LKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINM 366

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y +   +  AR +F+ M +    D++SWN+++A  AQS      + LF ++     ++ D
Sbjct: 367 YCKLRKIGLARTVFNNMSER---DLISWNSVIAGIAQSDLEVEAVCLFMQLL-RCGLKPD 422

Query: 240 GVSLVNALSACASLGT-WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
             ++ + L A +SL    S  KQ  +        +   V D     A++  YSR    ++
Sbjct: 423 HYTMTSVLKAASSLPEGLSLSKQIHV-----HAIKTNNVADSFVSTALIDAYSRNRCMKE 477

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF +        ++V W+A+++GY Q   GH+ L++F  M   G   +  TL ++L 
Sbjct: 478 AEVLFGRN-----NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLK 532

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C  + A+  GK+ H Y IK        +  DL V + ++DMY KC  +  A+  FD+I 
Sbjct: 533 TCGFLFAINQGKQVHAYAIK------SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI- 585

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
           P   DVA WT +I    +NG    AL +F QM     L  P+ FT++    A + L AL 
Sbjct: 586 PVPDDVA-WTTLISGCIENGEEERALHVFSQMRLMGVL--PDEFTIATLAKASSCLTALE 642

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            GRQIHA  L+       PFV   L+DMY++ G ID A  +F  ++  N+ +W +++ G 
Sbjct: 643 QGRQIHANALKLNCTS-DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGL 701

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
             HG G +A   F QM   G+ PD VTF+ +L ACSHSG+V +  KY  SM +++GI   
Sbjct: 702 AQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPE 761

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHY+C+ D LGRA  + EA  LI+ M ME +  ++  LL  CR+  + E G+  A +LL
Sbjct: 762 IEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLL 821

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           ELE     +Y LLSN+YA A +W ++   R++MK   VKK PG SW++ K     F V D
Sbjct: 822 ELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDD 881

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
           R++PQ++ IY+ +  +++ IK  GYVP+T F L DV++EEK   L+ HSEKLA+A+G+L+
Sbjct: 882 RSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLS 941

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           T P TPIR+ KNLR+CGDCH+A+ +IS + + EI+LRD+NRFH FK+G C+C  YW
Sbjct: 942 TPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 149/566 (26%), Positives = 255/566 (45%), Gaps = 93/566 (16%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G   HA I +   +   F+ N L++MY++C +L+YAR++FD+M +    D+VSWN+I+AA
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPER---DLVSWNSILAA 121

Query: 214 YAQSGDA-----EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS-----RGKQC- 262
           YAQS +      +   +LF  +  DV V    ++L   L  C   G         G  C 
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDV-VYTSRMTLSPMLKLCLHSGYVCASESFHGYACK 180

Query: 263 --------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
                               G ++E + +FE M  +DVV WN M+  Y  +G  E+A  L
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 303 ----------------------------------FKKMRQENVKLNVVTWSAVIAGYAQR 328
                                             F+     +    +++ + +++GY   
Sbjct: 241 SSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHA 300

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G     L  F  M    LE + VT + +L+    + +L LG++ HC  +K  L       
Sbjct: 301 GQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGL------- 353

Query: 389 DDLM--VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            DLM  V N+LI+MY K + + +AR +F+ ++   RD+ +W  +I   +Q+    +A+ L
Sbjct: 354 -DLMLTVSNSLINMYCKLRKIGLARTVFNNMS--ERDLISWNSVIAGIAQSDLEVEAVCL 410

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           F Q+ +    +KP+ +T++  L A + L   L   +QIH + ++    +   FV+  LID
Sbjct: 411 FMQLLRCG--LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTN-NVADSFVSTALID 467

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
            YSR+  +  A V+F      ++V+W ++M+GY     G K    F  M K+G   D  T
Sbjct: 468 AYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFT 526

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
              +L  C     ++QG K   + + + G        + I+D+  +   +  A    + +
Sbjct: 527 LATVLKTCGFLFAINQG-KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 585

Query: 626 PMEPTPIIWVALLNGCRIHANVELGE 651
           P+ P  + W  L++GC     +E GE
Sbjct: 586 PV-PDDVAWTTLISGC-----IENGE 605



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 140/564 (24%), Positives = 258/564 (45%), Gaps = 63/564 (11%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN +++  + +   + A  L       G HP+E T   + +  G+   S  G     
Sbjct: 218 VVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGD--DSEAG---QV 272

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               +G D++                               + +I+S N I++ Y  +G 
Sbjct: 273 KSFENGNDAS------------------------------AVSEIISRNKILSGYLHAGQ 302

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L  F  M  +  ++ D V+ +  L+    L + + G+Q   M     +   + V  
Sbjct: 303 YSALLKCFMDMV-ESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVS- 360

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               N+++  Y ++     A  +F  M +     ++++W++VIAG AQ     EA+ +F 
Sbjct: 361 ----NSLINMYCKLRKIGLARTVFNNMSER----DLISWNSVIAGIAQSDLEVEAVCLFM 412

Query: 340 QMQFCGLEPNVVTLVSLLSGCASV-GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           Q+  CGL+P+  T+ S+L   +S+   L L K+ H + IK       ++  D  V  ALI
Sbjct: 413 QLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKT------NNVADSFVSTALI 466

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y++ + +  A V+F      N D+  W  M+  Y+Q+   +  L LF  M +Q +  +
Sbjct: 467 DAYSRNRCMKEAEVLF---GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGE--R 521

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            + FTL+  L  C  L A+  G+Q+HAY +++ Y++ + +V++ ++DMY + GD+  A+ 
Sbjct: 522 SDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL-WVSSGILDMYVKCGDMSAAQF 580

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            FD++   + V+WT+L++G   +G  ++A   F QMR  G+ PD  T   L  A S    
Sbjct: 581 AFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTA 640

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++QG +   + + +   ++       +VD+  +   +D+A  L + + M      W A+L
Sbjct: 641 LEQG-RQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 698

Query: 639 NGCRIHANVELGELAANRLLELES 662
            G   H     G+ A     ++ES
Sbjct: 699 VGLAQHGE---GKEALQLFKQMES 719



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 191/455 (41%), Gaps = 91/455 (20%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS---VHA 159
           WN++I    +  L   A  LF+Q++R G  PD YT   VLKA   LP     S    VHA
Sbjct: 391 WNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHA 450

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +  ++  DS  FV  AL+  Y+R   +  A  LF         D+V+WN +++ Y QS D
Sbjct: 451 IKTNNVADS--FVSTALIDAYSRNRCMKEAEVLFGR----NNFDLVAWNAMMSGYTQSHD 504

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
               L LFA M    + + D  +L   L  C  L   ++GKQ                  
Sbjct: 505 GHKTLELFALMHKQGE-RSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS 563

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG M  A+  F+ + V D V+W  +++G    G  E A              
Sbjct: 564 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERA-------------- 609

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                L VF QM+  G+ P+  T+ +L    + + AL  G++ H
Sbjct: 610 ---------------------LHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 648

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K   + D        V  +L+DMYAKC S+D A  +F  I   N  +  W  M+  
Sbjct: 649 ANALKLNCTSDP------FVGTSLVDMYAKCGSIDDAYCLFKRIEMMN--ITAWNAMLVG 700

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA----ALRFGRQIHA-YVL 488
            +Q+G   +AL LF QM  +   +KP+  T    L AC+       A ++ R +H  Y +
Sbjct: 701 LAQHGEGKEALQLFKQM--ESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGI 758

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           + + E       +CL D   R+G +  A  + D++
Sbjct: 759 KPEIEHY-----SCLADALGRAGLVKEAENLIDSM 788



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 16/292 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI AY  +     A  L  R   + F +  WNA++    +         LF  M ++G  
Sbjct: 465 LIDAYSRNRCMKEAEVLFGR---NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGER 521

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D++T   VLK CG L +   G  VHA    SG+D +++V + ++ MY +C  +S A+  
Sbjct: 522 SDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFA 581

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD +  P   D V+W T+++   ++G+ E  L +F++M   + V  D  ++     A + 
Sbjct: 582 FDSIPVP---DDVAWTTLISGCIENGEEERALHVFSQMRL-MGVLPDEFTIATLAKASSC 637

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L    +G+Q           +     D     ++V  Y++ GS +DA+ LFK++      
Sbjct: 638 LTALEQGRQI-----HANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM---- 688

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +N+  W+A++ G AQ G G EAL +F+QM+  G++P+ VT + +LS C+  G
Sbjct: 689 MNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSG 740



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 16/219 (7%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L    S   L+LGK TH     R+L+++  +P+  +V N LI MY+KC S+  AR +FD
Sbjct: 52  FLRDAISTSDLMLGKCTHA----RILALE-ENPERFLV-NNLISMYSKCGSLTYARRVFD 105

Query: 416 AIAPKNRDVATWTVMIGSYSQNG-----GANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
            +    RD+ +W  ++ +Y+Q+         +A  LF ++ +QD +V  +  TLS  L  
Sbjct: 106 KMP--ERDLVSWNSILAAYAQSSEGVVENVKEAFLLF-RILRQD-VVYTSRMTLSPMLKL 161

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           C     +      H Y  +   +    FVA  L+++Y + G +   RV+F+ +  R+VV 
Sbjct: 162 CLHSGYVCASESFHGYACKIGLDG-DDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVL 220

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           W  ++  Y   G  ++A          GL P+ +T  +L
Sbjct: 221 WNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLL 259



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  G+  HA +L  + E    F+ N LI MYS+ G +  AR VFD + +R++VSW S++ 
Sbjct: 62  LMLGKCTHARILALE-ENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILA 120

Query: 537 GYGMHGLG-----DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            Y     G      +A   F  +R++ +    +T   +L  C HSG V    + F   + 
Sbjct: 121 AYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCAS-ESFHGYAC 179

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           + G+         +V++  +  ++ E   L E MP     ++W  +L  
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDV-VLWNLMLKA 227


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/779 (36%), Positives = 408/779 (52%), Gaps = 109/779 (13%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC------------- 202
           +VHA I +SGF  N F+ N L+ +Y +   ++YAR+LFD++ +P I              
Sbjct: 26  AVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSG 85

Query: 203 -----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMT--GDVKVQGDGVSL 243
                            D VS+N ++ AY+   D    L LF +M   G +       S+
Sbjct: 86  NVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSV 145

Query: 244 VNALSACAS--------------LGTW-------------------SRGKQCGMMEEAKK 270
           ++ALS  A               LGT                       K   +M  A+K
Sbjct: 146 LSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARK 205

Query: 271 VFERMKVKDVV--SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           VF+      +   SW  M+ GY R      A  L   +      ++V  W+A+I+GY +R
Sbjct: 206 VFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGL---TYPIDV-AWNAMISGYVRR 261

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVD 384
           G   EA D FR+M   G++ +  T  SL+S C S    +G    G++ H Y ++ V  V+
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTV--VE 319

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN----------------------- 421
            SH   L V NALI  Y K   +  AR +FD +  ++                       
Sbjct: 320 PSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSI 379

Query: 422 ------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
                 R+V TWTVMI   +QNG   + L LF QM  + + ++P  +  + A+ AC+ L 
Sbjct: 380 FSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQM--KSEGLEPCDYAFAGAITACSVLG 437

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +L  G+QIH+ V+R  ++  +    N LI MYSR G +++A  VF  +   + VSW +++
Sbjct: 438 SLDNGQQIHSQVIRLGHDSGLS-AGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMI 496

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
                HG G KA   F+QM KE + PD +TFL +L AC+H+G++ +G  YFD+M   +GI
Sbjct: 497 AALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGI 556

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
           +   +HYA ++DLL RA    +A  +I+ MP E    IW ALL GCRIH N+ELG  AA+
Sbjct: 557 TPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAAD 616

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           RLLEL   +DG+Y +LSN+YA  G+W +VAR+R LM+  GVKK PGCSWV+ +     F 
Sbjct: 617 RLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFL 676

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
           V D  HP+ Q +Y  L  LV  +K +GYVP T F LHD++ E K   L  HSEKLA+ YG
Sbjct: 677 VDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYG 736

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I+    G  IR+ KNLRICGDCH+A  +IS ++  EI++RD  RFHHFK G C+C  YW
Sbjct: 737 IMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 152/579 (26%), Positives = 252/579 (43%), Gaps = 95/579 (16%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + L++AY S      A  L      +      +NA+I           A  LF+QM 
Sbjct: 72  VARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMK 131

Query: 128 RRGWHPDEYTFPFVLKACGELP-SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT- 185
           R G+ PD +TF  VL A   +    R    +H  +   G      V NAL++ Y  C + 
Sbjct: 132 RYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASS 191

Query: 186 --------LSYARQLFDE-----MFQPGICDI-------------------------VSW 207
                   ++ AR++FDE     +++P    +                         V+W
Sbjct: 192 PLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAW 251

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS----LGTWSRGKQC- 262
           N +++ Y + G  E     F RM   + +Q D  +  + +SAC S    +G ++ G+Q  
Sbjct: 252 NAMISGYVRRGLYEEAFDTFRRMHS-MGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVH 310

Query: 263 -----------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
                                          M EA++VF++M V+D++SWNA+++GY   
Sbjct: 311 GYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNA 370

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
              E+A ++F +M +     NV+TW+ +I+G AQ G G E L +F QM+  GLEP     
Sbjct: 371 QRIEEANSIFSEMPER----NVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAF 426

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
              ++ C+ +G+L  G++ H   I+        H   L   NALI MY++C  V+ A  +
Sbjct: 427 AGAITACSVLGSLDNGQQIHSQVIRL------GHDSGLSAGNALITMYSRCGVVESAESV 480

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F  +     D  +W  MI + +Q+G    A+ LF QM ++D L  P+  T    L AC  
Sbjct: 481 F--LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDIL--PDRITFLTILTACNH 536

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANC--LIDMYSRSGDIDTARVVFDNLK-QRNVVS 530
              ++ GR  H +        + P   +   LID+  R+G    A+ V  ++  +     
Sbjct: 537 AGLIKEGR--HYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPI 594

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           W +L+ G  +HG  +    A D++ +     DG T+++L
Sbjct: 595 WEALLAGCRIHGNMELGIQAADRLLELIPGQDG-TYIIL 632


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/680 (38%), Positives = 404/680 (59%), Gaps = 25/680 (3%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           + +HA++  +G   +      L+  YAR   +  ARQ+FD+  Q   C + +WN ++ AY
Sbjct: 24  AKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQ---CGVDAWNAMIIAY 80

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           ++ G     L L+ RM  +  V+ D  +    L AC        G+     E  ++  ++
Sbjct: 81  SRRGAMFEALSLYHRMASE-GVRPDSSTYTVVLKACTRSLDLRSGE-----ETWRQAVDQ 134

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV    A++  Y++ G  ++A  +F KM + ++    V W+ +I G AQ G   EA
Sbjct: 135 GYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDL----VCWTTMITGLAQNGQAREA 190

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           +D++RQM    +E + V ++ L+  C ++G   +G   H Y I++ + +D      ++V 
Sbjct: 191 VDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMD------VIVQ 244

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L+DMYAK   +++A  +F  +  KN  V +W+ +I  ++QNG A +AL L   M  Q 
Sbjct: 245 TSLVDMYAKNGHLELASCVFRRMLYKN--VISWSALISGFAQNGFAGNALQLVVDM--QS 300

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
              KP++ +L   L+AC+++  L+ G+ +H Y++R  +   +   A  +IDMYS+ G + 
Sbjct: 301 FGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTA--VIDMYSKCGSLS 358

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR VFD +  R+ +SW +++  YG+HG G++A   F QMR+  + PD  TF  LL A S
Sbjct: 359 FARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFS 418

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+V++G  +F  M  E+ I    +HYAC+VDLL RA R++EA ELIE M  EP   IW
Sbjct: 419 HSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIW 478

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
           VALL+GC  H    +GE+AA ++LEL  +  G Y+L+SN +A A RW +VA +R +MK T
Sbjct: 479 VALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKT 538

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G+KK PG S ++       F + D++H Q ++I ++L  L   +KAMGYVP+T F LH++
Sbjct: 539 GMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNL 598

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           ++E K  +L  HSE+LA+A+G+L T PGT + ITKNLR+CGDCH A  FIS I+N EI++
Sbjct: 599 EEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVV 658

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD  RFHHFK+G C+C  YW
Sbjct: 659 RDVKRFHHFKDGVCSCGDYW 678



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 235/443 (53%), Gaps = 29/443 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    R      A  L+ +M   G  PD  T+  VLKAC      R G        
Sbjct: 73  WNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAV 132

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+  +VFV  A++ +YA+C  +  A ++FD+M   G  D+V W T++   AQ+G A  
Sbjct: 133 DQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKM---GRRDLVCWTTMITGLAQNGQARE 189

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + ++ +M    +V+GDGV ++  + AC +LG    G     +     +  +  + DV+ 
Sbjct: 190 AVDIYRQMHKK-RVEGDGVVMLGLIQACTTLGHSKMG-----LSIHGYMIRKDIIMDVIV 243

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             ++V  Y++ G  E A  +F++M  +    NV++WSA+I+G+AQ G    AL +   MQ
Sbjct: 244 QTSLVDMYAKNGHLELASCVFRRMLYK----NVISWSALISGFAQNGFAGNALQLVVDMQ 299

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G +P+ V+LVS+L  C+ VG L LGK  H Y ++R+         D +   A+IDMY+
Sbjct: 300 SFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRL-------HFDCVSSTAVIDMYS 352

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC S+  AR +FD I+   RD  +W  +I SY  +G   +AL+LF QM + +  VKP+  
Sbjct: 353 KCGSLSFARTVFDQISF--RDSISWNAIIASYGIHGSGEEALSLFLQMRETN--VKPDHA 408

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           T +  L A +    +  GR   + ++ N+Y+ + P   +  C++D+ SR+G ++ A+ + 
Sbjct: 409 TFASLLSAFSHSGLVEKGRYWFS-IMVNEYK-IQPSEKHYACMVDLLSRAGRVEEAQELI 466

Query: 521 DNL-KQRNVVSWTSLMTGYGMHG 542
           +++  +  +  W +L++G   HG
Sbjct: 467 ESMITEPGIAIWVALLSGCLNHG 489



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 62/379 (16%)

Query: 54  YLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           Y+I + II+  +     + L+  Y  +     A  + +R+     +V  W+ALI    + 
Sbjct: 231 YMIRKDIIMDVIVQ---TSLVDMYAKNGHLELASCVFRRMLYK--NVISWSALISGFAQN 285

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
               NA +L + M   G+ PD  +   VL AC ++   + G SVH  I       +    
Sbjct: 286 GFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSS 344

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
            A++ MY++C +LS+AR +FD   Q    D +SWN I+A+Y   G  E  L LF +M  +
Sbjct: 345 TAVIDMYSKCGSLSFARTVFD---QISFRDSISWNAIIASYGIHGSGEEALSLFLQMR-E 400

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQ-CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
             V+ D  +  + LSA +  G   +G+    +M    K+    K      +  MV   SR
Sbjct: 401 TNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEK-----HYACMVDLLSR 455

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G  E+A  L + M         +T                             EP +  
Sbjct: 456 AGRVEEAQELIESM---------IT-----------------------------EPGIAI 477

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD-VAR 411
            V+LLSGC + G  L+G+       K+VL ++   PDD  + + + + +A  +  D VA 
Sbjct: 478 WVALLSGCLNHGKFLIGE----MAAKKVLELN---PDDPGIYSLVSNFFATARRWDEVAE 530

Query: 412 VMFDAIAPKNRDVATWTVM 430
           V         + V  ++VM
Sbjct: 531 VRKIMKKTGMKKVPGYSVM 549


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/825 (34%), Positives = 445/825 (53%), Gaps = 63/825 (7%)

Query: 47  CKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           C  + +   +H++I         +  + LI+ Y   ++   A S+ + +     +V  WN
Sbjct: 20  CGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           A+I    +      A  L+ +M  +G   D  TF  VL AC  L   R    +H  +  S
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGR---EIHNRVFYS 136

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G DS   + NAL+ MYAR  ++  A+++F  +      D  SWN ++ A++QSGD  G L
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR---DETSWNAVILAHSQSGDWSGAL 193

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN 284
            +F  M  D+K   +  + +N +S  ++      G++    E     F+     D+V   
Sbjct: 194 RIFKEMKCDMKP--NSTTYINVISGFSTPEVLPEGRKI-HAEIVANGFD----SDLVVAT 246

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           A++  Y + GS  +A  +F KM+    K ++V+W+ +I  Y Q G  HEAL++++++   
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMK----KRDMVSWNVMIGCYVQNGDFHEALELYQKLDME 302

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G +    T VS+L  C+SV AL  G+  H + ++R L        ++ V  AL++MYAKC
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD------SEVAVATALVNMYAKC 356

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA---LFPQMFQQDKL----- 456
            S++ AR +F+A+  KNRD   W+ +IG+Y+ NG   DA     +F ++  +D +     
Sbjct: 357 GSLEEARKVFNAM--KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAM 414

Query: 457 -------------------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
                                    +KP+A T    L ACA L  L   + +HA +  ++
Sbjct: 415 ITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESE 474

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            E  +  V N LI+MY+R G ++ A  +F   K++ VVSWT+++  +  +G   +A   F
Sbjct: 475 LESNV-VVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLF 533

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M  EG+ PD VT+  +L+ C+H G ++QG +YF  M++  G++  A+H+A +VDLLGR
Sbjct: 534 QEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGR 593

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           + RL +A EL+E MP EP P+ W+  L  CRIH  +ELGE AA R+ EL+      Y  +
Sbjct: 594 SGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAM 653

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNIYA  G W+ VA +R  M+  G+KK PG S+++       F  G + HP++ +I E L
Sbjct: 654 SNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEEL 713

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKN 790
             L   ++A GYVP T   LHDV + EK  +L  HSEK+A+A+G++++   G PIR+ KN
Sbjct: 714 TRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKN 773

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHF-KEGSCTCKGYW 834
           LR+C DCH+A  FI+ I   +IILRD NRFH F  +G C+C  YW
Sbjct: 774 LRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/549 (30%), Positives = 275/549 (50%), Gaps = 77/549 (14%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            PD  TF  VL +C        G ++H  I  S F+ +  V NAL++MY +CD+L  AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALS 248
           +F+ M      ++VSWN ++AAYAQ+G +   L+L+ RM     +QG   D V+ V+ L 
Sbjct: 64  VFESMDWRQR-NVVSWNAMIAAYAQNGHSTEALVLYWRMN----LQGLGTDHVTFVSVLG 118

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW----NAMVTGYSRIGSFEDAFALFK 304
           AC+SL             + +++  R+    + S+    NA+VT Y+R GS  DA  +F+
Sbjct: 119 ACSSLA------------QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQ 166

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            ++      +  +W+AVI  ++Q G    AL +F++M+ C ++PN  T ++++SG ++  
Sbjct: 167 SLQTR----DETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPE 221

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            L  G++ H   +            DL+V  ALI+MY KC S   AR +FD +  K RD+
Sbjct: 222 VLPEGRKIHAEIVA------NGFDSDLVVATALINMYGKCGSSHEAREVFDKM--KKRDM 273

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +W VMIG Y QNG  ++AL L+ ++  +    K    T    L AC+ + AL  GR +H
Sbjct: 274 VSWNVMIGCYVQNGDFHEALELYQKLDMEG--FKRTKATFVSILGACSSVKALAQGRLVH 331

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
           +++L    +  +  VA  L++MY++ G ++ AR VF+ +K R+ V+W++L+  Y  +G G
Sbjct: 332 SHILERGLDSEVA-VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYG 390

Query: 545 D---KAHWAFDQMRKE--------------------------------GLAPDGVTFLVL 569
               KA   FD++                                   GL PD VTF+ +
Sbjct: 391 KDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAV 450

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L AC+  G + + +K   +   E  + +       ++++  R   L+EA  L      E 
Sbjct: 451 LEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EK 508

Query: 630 TPIIWVALL 638
           T + W A++
Sbjct: 509 TVVSWTAMV 517



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 182/388 (46%), Gaps = 61/388 (15%)

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETH----CYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           +P+ VT +++L  C+S G +  G+  H    C   +R          D MV NALI MY 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFER----------DTMVGNALISMYG 53

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC S+  AR +F+++  + R+V +W  MI +Y+QNG + +AL L+ +M  Q   +  +  
Sbjct: 54  KCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQG--LGTDHV 111

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--VANCLIDMYSRSGDIDTARVVF 520
           T    L AC+ LA    GR+IH  V    Y  L  F  +AN L+ MY+R G +  A+ +F
Sbjct: 112 TFVSVLGACSSLAQ---GREIHNRVF---YSGLDSFQSLANALVTMYARFGSVGDAKRMF 165

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
            +L+ R+  SW +++  +   G    A   F +M+ + + P+  T++ ++   S   ++ 
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLP 224

Query: 581 QGLKY--------FDS----------MSKEFGISARAEH------------YACIVDLLG 610
           +G K         FDS          M  + G S  A              +  ++    
Sbjct: 225 EGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 611 RANRLDEAVELIEGMPMEP---TPIIWVALLNGCRIHANVELGELAANRLLE--LESEKD 665
           +     EA+EL + + ME    T   +V++L  C     +  G L  + +LE  L+SE  
Sbjct: 285 QNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV- 343

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKH 693
              T L N+YA  G  ++  ++ + MK+
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKN 371


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/680 (38%), Positives = 400/680 (58%), Gaps = 25/680 (3%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           + +HA +  SG   + F+    +        + YAR++FDE  +P    +  WN I+  Y
Sbjct: 88  NQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEP---SVFLWNAIIRGY 144

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           +        + +++RM     V  DG +L   L AC+ +     GK+        ++F  
Sbjct: 145 SSHNFFGDAIEMYSRMQAS-GVNPDGFTLPCVLKACSGVPVLEVGKRV-----HGQIFRL 198

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   N +V  Y++ G  E A  +F+ +   N+    V+W+++I+GY Q G   EA
Sbjct: 199 GFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI----VSWTSMISGYGQNGLPMEA 254

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L +F QM+   ++P+ + LVS+L     V  L  GK  H   +K  L  +   PD L+ +
Sbjct: 255 LRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFE---PDLLISL 311

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            A   MYAKC  V VAR  FD +   N  V  W  MI  Y++NG  N+A+ LF +M  ++
Sbjct: 312 TA---MYAKCGQVMVARSFFDQMEIPN--VMMWNAMISGYAKNGYTNEAVGLFQEMISKN 366

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             ++ ++ T+  A++ACA++ +L   + +  Y+ + +Y   + FV   LIDM+++ G +D
Sbjct: 367 --IRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDV-FVNTALIDMFAKCGSVD 423

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR VFD    ++VV W++++ GYG+HG G  A   F  M++ G+ P+ VTF+ LL AC+
Sbjct: 424 LAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACN 483

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+V++G + F SM K +GI AR +HYAC+VDLLGR+  L+EA + I  MP+EP   +W
Sbjct: 484 HSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVW 542

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL  C+I+ +V LGE AA +L  L+    G Y  LSN+YA++  W  VA++R LM+  
Sbjct: 543 GALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREK 602

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G+ K  G S ++       F VGD++HP+ ++I+E L  L +R+K  G++P     LHD+
Sbjct: 603 GLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDL 662

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           + EEK + L  HSE+LA+AYG+++TAPGT +RITKNLR C +CHSA   IS ++N EI++
Sbjct: 663 NQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVV 722

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD+NRFHHFK G C+C+ YW
Sbjct: 723 RDANRFHHFKNGVCSCRDYW 742



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 148/493 (30%), Positives = 230/493 (46%), Gaps = 88/493 (17%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRIS---PSPFSVFWWNALIRRAVR 112
           IH Q++V  L  V    L+  +V+ +     +   +++    P P SVF WNA+IR    
Sbjct: 90  IHAQLVVSGL--VESGFLVTKFVNASWNIGEIGYARKVFDEFPEP-SVFLWNAIIRGYSS 146

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
                +A  ++ +M   G +PD +T P VLKAC  +P    G  VH  I   GF+S+VFV
Sbjct: 147 HNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFV 206

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICD--IVSWNTIVAAYAQSGDAEGGLMLFARM 230
            N L+A+YA+C  +  AR +F+     G+ D  IVSW ++++ Y Q+G     L +F +M
Sbjct: 207 QNGLVALYAKCGRVEQARIVFE-----GLDDRNIVSWTSMISGYGQNGLPMEALRIFGQM 261

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGM 264
                V+ D ++LV+ L A   +    +GK                          +CG 
Sbjct: 262 R-QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQ 320

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT-WSAVIA 323
           +  A+  F++M++ +V+ WNAM++GY++ G   +A  LF++M  +N++ + +T  SA++A
Sbjct: 321 VMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILA 380

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
                                               CA VG+L L K    Y  K     
Sbjct: 381 ------------------------------------CAQVGSLDLAKWMGDYINKT---- 400

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
              + +D+ V  ALIDM+AKC SVD+AR +FD    K  DV  W+ MI  Y  +G   DA
Sbjct: 401 --EYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDK--DVVVWSAMIVGYGLHGRGQDA 456

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           + LF  M Q    V PN  T    L AC     +  G ++   +     E      A C+
Sbjct: 457 IDLFYAMKQAG--VCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYA-CV 513

Query: 504 IDMYSRSGDIDTA 516
           +D+  RSG ++ A
Sbjct: 514 VDLLGRSGHLNEA 526



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 22/254 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNA+I    +    + A  LF +M+ +    D  T    + AC ++ S      + 
Sbjct: 335 NVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMG 394

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  + + ++VFV  AL+ M+A+C ++  AR++FD        D+V W+ ++  Y   G
Sbjct: 395 DYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDK---DVVVWSAMIVGYGLHG 451

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             +  + LF  M     V  + V+ V  L+AC            G++EE  ++F  MK  
Sbjct: 452 RGQDAIDLFYAMK-QAGVCPNDVTFVGLLTAC---------NHSGLVEEGWELFHSMKYY 501

Query: 279 DVVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            + +    +  +V    R G   +A+     M    ++  V  W A++   A + + H  
Sbjct: 502 GIEARHQHYACVVDLLGRSGHLNEAYDFITTM---PIEPGVSVWGALLG--ACKIYRHVT 556

Query: 335 LDVFRQMQFCGLEP 348
           L  +   Q   L+P
Sbjct: 557 LGEYAAEQLFSLDP 570


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/732 (38%), Positives = 421/732 (57%), Gaps = 30/732 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN ++    ++   + A  L+ +M+  G  PD YTFP VL+ CG +P  R G  VHA
Sbjct: 162 VFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHA 221

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF   V V NAL+ MYA+C  +  AR++FD M    + D +SWN ++A + ++ +
Sbjct: 222 HVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGM---AVTDCISWNAMIAGHFENHE 278

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK-VFERMKVK 278
            E GL LF  M  + +VQ + +++ +   A   L       + G  +E      +R    
Sbjct: 279 CEAGLELFLTMLEN-EVQPNLMTITSVTVASGML------SEVGFAKEMHGFAVKRGFAI 331

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV   N+++  Y+ +G   DA  +F +M  ++     ++W+A+I+GY + G   +AL+V+
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDA----MSWTAMISGYEKNGFPDKALEVY 387

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M+   + P+ VT+ S L+ CA +G L +G + H       L+ +      ++V NAL+
Sbjct: 388 ALMELHNVSPDDVTIASALAACACLGRLDVGIKLH------ELAQNKGFIRYVVVANALL 441

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           +MYAK K +D A  +F  +A K  DV +W+ MI  +  N  + +AL  F  M      VK
Sbjct: 442 EMYAKSKHIDKAIEVFKFMAEK--DVVSWSSMIAGFCFNHRSFEALYYFRYMLGH---VK 496

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN+ T   AL ACA   ALR G++IHAYVLR        +V N L+D+Y + G    A  
Sbjct: 497 PNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE-GYVPNALLDLYVKCGQTSYAWA 555

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F    +++VVSW  +++G+  HGLGD A   F+QM + G  PD VTF+ LL ACS +GM
Sbjct: 556 QFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGM 615

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V QG + F  M+++F I    +HYAC+VDLL R  +L EA  LI  MP++P   +W ALL
Sbjct: 616 VIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALL 675

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           NGCRIH +VELGELAA  +LELE      + LL ++Y +AG+W  VAR+R  M+  G+++
Sbjct: 676 NGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQ 735

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             GCSWV+ K  T  F   D +HPQ ++I  +L G+ +R+KA G+ P  S    +V ++ 
Sbjct: 736 DNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSED- 794

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
             D+L  HSE+LA+A+G++ T PGT I +TKN   C  CH     IS I+  EI +RD+ 
Sbjct: 795 --DILCGHSERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTK 852

Query: 819 RFHHFKEGSCTC 830
           + H FK+G C+C
Sbjct: 853 QLHCFKDGDCSC 864



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 202/404 (50%), Gaps = 19/404 (4%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A  A   L  W R    GM   A+   E       +  NAM++   R G    A+ +F K
Sbjct: 98  AYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLG-NAMLSMLVRFGEIWHAWRVFAK 156

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +V     +W+ ++ GY + G   EALD++ +M + G+ P+V T   +L  C  +  
Sbjct: 157 MPERDV----FSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPD 212

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
             +G+E H + ++          D++ V+NAL+ MYAKC  +  AR +FD +A    D  
Sbjct: 213 WRMGREVHAHVLRFGFG------DEVDVLNALVTMYAKCGDIVAARKVFDGMAVT--DCI 264

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  MI  + +N      L LF  M + +  V+PN  T++   +A   L+ + F +++H 
Sbjct: 265 SWNAMIAGHFENHECEAGLELFLTMLENE--VQPNLMTITSVTVASGMLSEVGFAKEMHG 322

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           + ++  + + + F  N LI MY+  G +  A  +F  ++ ++ +SWT++++GY  +G  D
Sbjct: 323 FAVKRGFAIDVAF-CNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPD 381

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           KA   +  M    ++PD VT    L AC+  G +D G+K  + +++  G          +
Sbjct: 382 KALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHE-LAQNKGFIRYVVVANAL 440

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CRIHANVE 648
           +++  ++  +D+A+E+ + M  E   + W +++ G C  H + E
Sbjct: 441 LEMYAKSKHIDKAIEVFKFMA-EKDVVSWSSMIAGFCFNHRSFE 483


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/737 (38%), Positives = 424/737 (57%), Gaps = 30/737 (4%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM-RRGWHPDEYTFPFVLKACGELPSSRCG 154
           S  ++F WN L+    +    D A  L+ +M+   G  PD YTFP VL+ CG +P    G
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARG 215

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH  +   G++ ++ V NAL+ MY +C  +  AR LFD M +    DI+SWN +++ Y
Sbjct: 216 REVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRR---DIISWNAMISGY 272

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            ++G    GL LF  M G + V  D ++L + +SAC  LG    G+       A  +   
Sbjct: 273 FENGMGHEGLKLFFAMRG-LSVDPDLMTLTSVISACELLGDRRLGRDI----HAYVITTG 327

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
             V D+   N++   Y   GS+ +A  LF +M  +++    V+W+ +I+GY       +A
Sbjct: 328 FAV-DISVCNSLTQMYLYAGSWREAEKLFSRMDCKDI----VSWTTMISGYEYNFLPEKA 382

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-RVLSVDGSHPDDLMV 393
           +D +R M    ++P+ +T+ ++LS CA++G L  G E H   IK R++S        ++V
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY-------VIV 435

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            N LI+MY+KCK +D A  +F  I  KN  V +WT +I     N    +AL  F QM   
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKN--VISWTSIIAGLRLNNRCFEALIFFRQM--- 490

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              ++PNA TL+ AL ACAR+ AL  G++IHA+VLR     L  F+ N L+DMY R G +
Sbjct: 491 KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVG-LDDFLPNALLDMYVRCGRM 549

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           + A   F N ++++V SW  L+TGY   G G      FD+M K  + PD +TF+ LL  C
Sbjct: 550 NIAWNQF-NSQKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGC 608

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
             S MV QGL YF  M +E+G++   +HYAC+VDLLGRA  L EA + I+ MP+ P P +
Sbjct: 609 GKSQMVRQGLMYFSKM-EEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAV 667

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W ALLN CRIH N++LGEL+A R+ EL+    G Y LL N+YA+ G+W++VA++R +MK 
Sbjct: 668 WGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKE 727

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            G+    GCSWV+ K     F   D+ HPQ+++I  +L G  +++  +G    +  +  D
Sbjct: 728 NGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMSEVGLTTSSESSSMD 787

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
             +  + ++   HSE+ A+A+G++ + PG PI +TKNL +C  CH  + FIS  +  EI 
Sbjct: 788 ETEISRDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESCHDTVKFISKTVRREIS 847

Query: 814 LRDSNRFHHFKEGSCTC 830
           +RDS  FHHFK+G C+C
Sbjct: 848 VRDSEHFHHFKDGECSC 864



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 201/414 (48%), Gaps = 55/414 (13%)

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           KV    +S +N+LS        +   + G + +A  VF +M  +++ SWN +V GY++ G
Sbjct: 115 KVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQG 174

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
            F++A  L+ +M           W                          G++P+V T  
Sbjct: 175 YFDEAICLYHRM----------LWVG------------------------GVKPDVYTFP 200

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +L  C  +  L  G+E H + ++        +  D+ V+NALI MY KC  V  AR++F
Sbjct: 201 CVLRTCGGIPDLARGREVHVHVVRY------GYELDIDVVNALITMYVKCGDVKSARLLF 254

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D + P+ RD+ +W  MI  Y +NG  ++ L LF  M  +   V P+  TL+  + AC  L
Sbjct: 255 DRM-PR-RDIISWNAMISGYFENGMGHEGLKLFFAM--RGLSVDPDLMTLTSVISACELL 310

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
              R GR IHAYV+   + + I  V N L  MY  +G    A  +F  +  +++VSWT++
Sbjct: 311 GDRRLGRDIHAYVITTGFAVDIS-VCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTM 369

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++GY  + L +KA   +  M ++ + PD +T   +L AC+  G +D G++       +  
Sbjct: 370 ISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVEL-----HKLA 424

Query: 595 ISARAEHYACI----VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           I AR   Y  +    +++  +   +D+A+++   +P +   I W +++ G R++
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNV-ISWTSIIAGLRLN 477



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 133/256 (51%), Gaps = 10/256 (3%)

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           + G    G   EA+ +   MQ   +  +    V+L+  C    A   G + +   +  + 
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
           S+       + + NA + M+ +  ++  A  +F  ++ +N  + +W V++G Y++ G  +
Sbjct: 126 SLS------VELGNAFLAMFVRFGNLVDAWYVFGKMSERN--LFSWNVLVGGYAKQGYFD 177

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A+ L+ +M      VKP+ +T  C L  C  +  L  GR++H +V+R  YE+ I  V N
Sbjct: 178 EAICLYHRMLWVGG-VKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDID-VVN 235

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI MY + GD+ +AR++FD + +R+++SW ++++GY  +G+G +    F  MR   + P
Sbjct: 236 ALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDP 295

Query: 562 DGVTFLVLLYACSHSG 577
           D +T   ++ AC   G
Sbjct: 296 DLMTLTSVISACELLG 311



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +A+ L   M +    V  + F     L  C    A   G ++++  L +   + +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRL--CEWKRAHEEGSKVYSVALSSMNSLSV 129

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR- 555
             + N  + M+ R G++  A  VF  + +RN+ SW  L+ GY   G  D+A   + +M  
Sbjct: 130 E-LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLW 188

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G+ PD  TF  +L  C     + +G +    + + +G     +    ++ +  +   +
Sbjct: 189 VGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVR-YGYELDIDVVNALITMYVKCGDV 247

Query: 616 DEAVELIEGMPMEPTPIIWVALLNG 640
             A  L + MP     I W A+++G
Sbjct: 248 KSARLLFDRMPRRDI-ISWNAMISG 271


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 406/746 (54%), Gaps = 36/746 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR---CGSSVHA 159
           WN+LI         + A   F  M+     P  +T   V+ AC  LP       G  VHA
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G + N F+ N L+AMY +   L+ ++ L       G  D+V+WNT++++  Q+  
Sbjct: 227 YGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSF---GGRDLVTWNTVLSSLCQNEQ 282

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L     M  +  V+ D  ++ + L AC+ L     GK+           +    ++
Sbjct: 283 LLEALEYLREMVLE-GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD----EN 337

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               +A+V  Y           +F  M    + L    W+A+IAGY+Q  H  EAL +F 
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL----WNAMIAGYSQNEHDKEALLLFI 393

Query: 340 QMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            M+   GL  N  T+  ++  C   GA    +  H + +KR L        D  V N L+
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD------RDRFVQNTLM 447

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV- 457
           DMY++   +D+A  +F  +  ++RD+ TW  MI  Y  +    DAL L  +M   ++ V 
Sbjct: 448 DMYSRLGKIDIAMRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505

Query: 458 --------KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
                   KPN+ TL   L +CA L+AL  G++IHAY ++N     +  V + L+DMY++
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAK 564

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G +  +R VFD + Q+NV++W  ++  YGMHG G +A      M  +G+ P+ VTF+ +
Sbjct: 565 CGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISV 624

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
             ACSHSGMVD+GL+ F  M  ++G+   ++HYAC+VDLLGRA R+ EA +L+  MP + 
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDF 684

Query: 630 TPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
                W +LL   RIH N+E+GE+AA  L++LE      Y LL+NIY++AG W     +R
Sbjct: 685 NKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVR 744

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
             MK  GV+K PGCSW++  +    F  GD +HPQS+K+   L  L +R++  GYVP TS
Sbjct: 745 RNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTS 804

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
             LH+V+++EK  LL  HSEKLA+A+GIL T+PGT IR+ KNLR+C DCH A  FIS I+
Sbjct: 805 CVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIV 864

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
           + EIILRD  RFH FK G+C+C  YW
Sbjct: 865 DREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 172/644 (26%), Positives = 299/644 (46%), Gaps = 46/644 (7%)

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           L    P+       S  + +P++ + Q  SP      WW  L+R  VR  L   A   ++
Sbjct: 32  LLRATPTSATEDVASAVSGAPSIFISQSRSPE-----WWIDLLRSKVRSNLLREAVLTYV 86

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARC 183
            M+  G  PD Y FP +LKA  +L     G  +HA +   G+   +V V N L+ +Y +C
Sbjct: 87  DMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC 146

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
                  ++FD + +    + VSWN+++++       E  L  F R   D  V+    +L
Sbjct: 147 GDFGAVYKVFDRISER---NQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTL 202

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
           V+ ++AC++L     G   G    A  +  R    +    N +V  Y ++G    +  L 
Sbjct: 203 VSVVTACSNL-PMPEGLMMGKQVHAYGL--RKGELNSFIINTLVAMYGKLGKLASSKVLL 259

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
                     ++VTW+ V++   Q     EAL+  R+M   G+EP+  T+ S+L  C+ +
Sbjct: 260 GSFGGR----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
             L  GKE H Y +K     +GS  ++  V +AL+DMY  CK V   R +FD +   +R 
Sbjct: 316 EMLRTGKELHAYALK-----NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF--DRK 368

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           +  W  MI  YSQN    +AL LF  M +   L+  N+ T++  + AC R  A      I
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H +V++   +    FV N L+DMYSR G ID A  +F  ++ R++V+W +++TGY     
Sbjct: 428 HGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486

Query: 544 GDKAHWAFDQMR-----------KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            + A     +M+           +  L P+ +T + +L +C+    + +G K   + + +
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYAIK 545

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
             ++      + +VD+  +   L  + ++ + +P +   I W  ++    +H N   G+ 
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQE 601

Query: 653 AAN--RLLELESEKDGSYTLLSNIYA--NAGRWKDVARIRSLMK 692
           A +  R++ ++  K    T +S   A  ++G   +  RI  +MK
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 406/746 (54%), Gaps = 36/746 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR---CGSSVHA 159
           WN+LI         + A   F  M+     P  +T   V+ AC  LP       G  VHA
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G + N F+ N L+AMY +   L+ ++ L       G  D+V+WNT++++  Q+  
Sbjct: 227 YGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSF---GGRDLVTWNTVLSSLCQNEQ 282

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L     M  +  V+ D  ++ + L AC+ L     GK+           +    ++
Sbjct: 283 LLEALEYLREMVLE-GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD----EN 337

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               +A+V  Y           +F  M    + L    W+A+IAGY+Q  H  EAL +F 
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL----WNAMIAGYSQNEHDKEALLLFI 393

Query: 340 QMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            M+   GL  N  T+  ++  C   GA    +  H + +KR L        D  V N L+
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD------RDRFVQNTLM 447

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV- 457
           DMY++   +D+A  +F  +  ++RD+ TW  MI  Y  +    DAL L  +M   ++ V 
Sbjct: 448 DMYSRLGKIDIAMRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505

Query: 458 --------KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
                   KPN+ TL   L +CA L+AL  G++IHAY ++N     +  V + L+DMY++
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAK 564

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G +  +R VFD + Q+NV++W  ++  YGMHG G +A      M  +G+ P+ VTF+ +
Sbjct: 565 CGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISV 624

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
             ACSHSGMVD+GL+ F  M  ++G+   ++HYAC+VDLLGRA R+ EA +L+  MP + 
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDF 684

Query: 630 TPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
                W +LL   RIH N+E+GE+AA  L++LE      Y LL+NIY++AG W     +R
Sbjct: 685 NKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVR 744

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
             MK  GV+K PGCSW++  +    F  GD +HPQS+K+   L  L +R++  GYVP TS
Sbjct: 745 RNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTS 804

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
             LH+V+++EK  LL  HSEKLA+A+GIL T+PGT IR+ KNLR+C DCH A  FIS I+
Sbjct: 805 CVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIV 864

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
           + EIILRD  RFH FK G+C+C  YW
Sbjct: 865 DREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 172/644 (26%), Positives = 299/644 (46%), Gaps = 46/644 (7%)

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           L    P+       S  + +P++ + Q  SP      WW  L+R  VR  L   A   ++
Sbjct: 32  LLRATPTSATEDVASAVSGAPSIFISQSRSPE-----WWIDLLRSKVRSNLLREAVLTYV 86

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARC 183
            M+  G  PD Y FP +LKA  +L     G  +HA +   G+   +V V N L+ +Y +C
Sbjct: 87  DMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC 146

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
                  ++FD + +    + VSWN+++++       E  L  F R   D  V+    +L
Sbjct: 147 GDFGAVYKVFDRISER---NQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTL 202

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
           V+ ++AC++L     G   G    A  +  R    +    N +V  Y ++G    +  L 
Sbjct: 203 VSVVTACSNL-PMPEGLMMGKQVHAYGL--RKGELNSFIINTLVAMYGKLGKLASSKVLL 259

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
                     ++VTW+ V++   Q     EAL+  R+M   G+EP+  T+ S+L  C+ +
Sbjct: 260 GSFGGR----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
             L  GKE H Y +K     +GS  ++  V +AL+DMY  CK V   R +FD +   +R 
Sbjct: 316 EMLRTGKELHAYALK-----NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF--DRK 368

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           +  W  MI  YSQN    +AL LF  M +   L+  N+ T++  + AC R  A      I
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H +V++   +    FV N L+DMYSR G ID A  +F  ++ R++V+W +++TGY     
Sbjct: 428 HGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486

Query: 544 GDKAHWAFDQMR-----------KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            + A     +M+           +  L P+ +T + +L +C+    + +G K   + + +
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYAIK 545

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
             ++      + +VD+  +   L  + ++ + +P +   I W  ++    +H N   G+ 
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQE 601

Query: 653 AAN--RLLELESEKDGSYTLLSNIYA--NAGRWKDVARIRSLMK 692
           A +  R++ ++  K    T +S   A  ++G   +  RI  +MK
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 293/811 (36%), Positives = 452/811 (55%), Gaps = 45/811 (5%)

Query: 36  CIKITSL-LLRQCK---SLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSL 89
           C  +T L +L+ C     L+Q   IH  I+   L    V  + L+  Y S    + A+ L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 90  LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149
            +R+     S   WNA I    +    D A  LF +M   G  P   T    L  C ++ 
Sbjct: 186 FERMERDLVS---WNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIR 242

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
            +R   ++H+++  SG +  + V  AL + YAR   L  A+++FD   +    D+VSWN 
Sbjct: 243 QAR---AIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAER---DVVSWNA 296

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           ++ AYAQ G      +LFARM  +  +    V+LVNA + C+SL        C +     
Sbjct: 297 MLGAYAQHGHMSEAALLFARMLHE-GIPPSKVTLVNASTGCSSLRFGRMIHACAL----- 350

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
              E+   +D+V  NA++  Y+R GS E+A  LF     E +  N V+W+ +IAG +Q+G
Sbjct: 351 ---EKGLDRDIVLGNALLDMYTRCGSPEEARHLF-----EGIPGNAVSWNTMIAGSSQKG 402

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDG 385
               AL++F++MQ  G+ P   T ++LL   AS      A+  G++ H     R++S   
Sbjct: 403 QMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLH----SRIVSC-- 456

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDAL 444
            +  +  +  A++ MYA C ++D A   F   A ++R DV +W  +I S SQ+G    AL
Sbjct: 457 GYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRAL 516

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
             F +M      V PN  T    L ACA  AAL  G  +H ++  +  E  + FVA  L 
Sbjct: 517 GFFRRMDLHG--VAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNV-FVATALA 573

Query: 505 DMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
            MY R G +++AR +F+ +  +R+VV + +++  Y  +GL  +A   F +M++EG  PD 
Sbjct: 574 SMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDE 633

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
            +F+ +L ACSH G+ D+G + F SM + +GI+   +HYAC VD+LGRA  L +A ELI 
Sbjct: 634 QSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIR 693

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            M ++PT ++W  LL  CR + +V+ G LA + + EL+   + +Y +LSNI A AG+W +
Sbjct: 694 CMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDE 753

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
            A +R+ M+  G++K+ G SW++ K     F  GDR+HP+S++IY  L  L   I+ +GY
Sbjct: 754 AAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGY 813

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           VP T   L  VD+ EK  LL +HSE+LA+A G+++++  T +R+ KNLR+C DCH+A  F
Sbjct: 814 VPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKF 872

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS I+N EI++RD++RFHHF +GSC+C  YW
Sbjct: 873 ISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 173/388 (44%), Gaps = 72/388 (18%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +C  + + ++VF R++V+D  SW  ++T Y+  G  + A  +F +M+QE V+ + VT+ A
Sbjct: 74  KCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLA 133

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           V                                   L  CA +G L  G+  H + ++  
Sbjct: 134 V-----------------------------------LKACARLGDLSQGRSIHAWIVESG 158

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L          ++ N L+ +Y  C  V  A ++F+ +    RD+ +W   I + +Q+G  
Sbjct: 159 LEGKS------VLANLLLHIYGSCGCVASAMLLFERM---ERDLVSWNAAIAANAQSGDL 209

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           + AL LF +M  Q + V+P   TL   L  CA+   +R  R IH+ V  +  E  +  V+
Sbjct: 210 DMALELFQRM--QLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTL-VVS 263

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             L   Y+R G +D A+ VFD   +R+VVSW +++  Y  HG   +A   F +M  EG+ 
Sbjct: 264 TALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIP 323

Query: 561 PDGVTFLVLLYACS--------HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           P  VT +     CS        H+  +++GL     +               ++D+  R 
Sbjct: 324 PSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGN------------ALLDMYTRC 371

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNG 640
              +EA  L EG+P     + W  ++ G
Sbjct: 372 GSPEEARHLFEGIP--GNAVSWNTMIAG 397



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  GR+IHA ++    E     + N L+ +Y +   +     VF  L+ R+  SWT+++T
Sbjct: 45  LSQGRRIHARIVSLGLE---EELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIIT 101

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
            Y  HG   +A W F +M++EG+  D VTFL +L AC+  G + QG +   +   E G+ 
Sbjct: 102 AYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RSIHAWIVESGLE 160

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN- 655
            ++     ++ + G    +  A+ L E   ME   + W A      I AN + G+L    
Sbjct: 161 GKSVLANLLLHIYGSCGCVASAMLLFE--RMERDLVSWNAA-----IAANAQSGDLDMAL 213

Query: 656 ---RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              + ++LE  +    TL+  +   A + +    I S+++ +G+++
Sbjct: 214 ELFQRMQLEGVRPARITLVITLSVCA-KIRQARAIHSIVRESGLEQ 258


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/750 (35%), Positives = 406/750 (54%), Gaps = 73/750 (9%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +LK C E  +      +H +I  +      F+ N L+  Y +   L+YA  +FD + QP 
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 201 IC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           +                             D VSWN  ++ YA  G     + ++  M  
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQC--------------------------GMME 266
           D  +  + ++    L  C+       G+Q                           G++ 
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           +AK+ F+ M  ++VV  N M+TG  R G  E++  LF  +++ +     ++W+ +I G  
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDS----ISWTIMITGLM 246

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q G   EALD+FR+M+  G   +  T  S+L+ C S+ AL  GK+ H Y I+        
Sbjct: 247 QNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT------D 300

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
           H D++ V +AL+DMY+KC+S+  A  +F  +  KN  V +WT M+  Y QNG + +A+ +
Sbjct: 301 HKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKN--VISWTAMLVGYGQNGFSEEAVKI 358

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--VANCLI 504
           F +M  Q   V+P+ FTL   + +CA LA+L  G Q H   L +    LI F  V+N LI
Sbjct: 359 FFEM--QRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG---LISFITVSNALI 413

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            +Y + G  + +  +F  +  R+ VSWT+L+ GY   G  ++    F++M   GL PDGV
Sbjct: 414 TLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGV 473

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF+ +L ACS +G+V++GL+YF+SM KE GI    +H  CI+DLLGRA RL+EA   I  
Sbjct: 474 TFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINN 533

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MP  P  + W  LL+ CR+H ++E+G+ AA+ L+ LE +   SY LLS++YA+ G+W  V
Sbjct: 534 MPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKV 593

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744
           A++R  M+   V+K PG SW++ K     F   D++ P   +IY  L  L  ++   GYV
Sbjct: 594 AQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYV 653

Query: 745 PQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFI 804
           P  S  LHDV++ EK  +L  HSEKLA+A+G++   PG PIR+ KNLR+CGDCH+A  FI
Sbjct: 654 PDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFI 713

Query: 805 SMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           S I   EI++RD+ RFH FK+G+C+C  +W
Sbjct: 714 SKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 246/544 (45%), Gaps = 61/544 (11%)

Query: 67  HVPPSHLIA--AYVSHNAPSPALSLLQRI-SPSPF-SVFWWNALIRRAVRLRLPDNAFRL 122
           H+P  +L +    +S  +    LS +Q+I +  PF     WN  I          +A R+
Sbjct: 65  HIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRV 124

Query: 123 FLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           +  M++    + +  TF  +L  C +      G  ++  I   GF S+VFV + L+ MY 
Sbjct: 125 YKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYT 184

Query: 182 RCDTLSYARQLFDEMFQPGIC----------------------------DIVSWNTIVAA 213
           +   +  A++ FDEM +  +                             D +SW  ++  
Sbjct: 185 KLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITG 244

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
             Q+G     L +F  M    ++ G   D  +  + L+AC SL     GKQ         
Sbjct: 245 LMQNGLEREALDMFREM----RLAGFAMDQFTFGSVLTACGSLLALGEGKQI-----HAY 295

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           V       +V   +A+V  YS+  S + A  +FK+M Q+N    V++W+A++ GY Q G 
Sbjct: 296 VIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKN----VISWTAMLVGYGQNGF 351

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
             EA+ +F +MQ  G+EP+  TL S++S CA++ +L  G + HC  +   L         
Sbjct: 352 SEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL------ISF 405

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           + V NALI +Y KC S + +  +F  +    RD  +WT ++  Y+Q G AN+ + LF +M
Sbjct: 406 ITVSNALITLYGKCGSTENSHRLFTEM--NIRDEVSWTALLAGYAQFGKANETIGLFERM 463

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                 +KP+  T    L AC+R   +  G Q    +++    M I     C+ID+  R+
Sbjct: 464 LAHG--LKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRA 521

Query: 511 GDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLV 568
           G ++ AR   +N+    +VV W +L++   +HG  +   WA D +   E   P     L 
Sbjct: 522 GRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLS 581

Query: 569 LLYA 572
            LYA
Sbjct: 582 SLYA 585



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 196/395 (49%), Gaps = 50/395 (12%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I   ++  L   A  +F +M   G+  D++TF  VL ACG L +   G  +HA + 
Sbjct: 238 WTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVI 297

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +    NVFV +AL+ MY++C ++  A  +F  M Q    +++SW  ++  Y Q+G +E 
Sbjct: 298 RTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQK---NVISWTAMLVGYGQNGFSEE 354

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + +F  M  +  V+ D  +L + +S+CA+L +         +EE  +   R  V  ++S
Sbjct: 355 AVKIFFEMQRN-GVEPDDFTLGSVISSCANLAS---------LEEGAQFHCRALVSGLIS 404

Query: 283 W----NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +    NA++T Y + GS E++  LF +M   N++ + V+W+A++AGYAQ G  +E + +F
Sbjct: 405 FITVSNALITLYGKCGSTENSHRLFTEM---NIR-DEVSWTALLAGYAQFGKANETIGLF 460

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP--DDLMVINA 396
            +M   GL+P+ VT + +LS C+  G +  G +     IK      G  P  D    I  
Sbjct: 461 ERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKE----HGIMPIVDHCTCI-- 514

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-------GANDALALFPQ 449
            ID+  +   ++ AR   + + P + DV  W  ++ S   +G        A+  +AL PQ
Sbjct: 515 -IDLLGRAGRLEEARNFINNM-PCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQ 572

Query: 450 MFQQDKLVKPNAFTLSCALMACA----RLAALRFG 480
                    P ++ L  +L A      ++A LR G
Sbjct: 573 --------NPASYVLLSSLYASKGKWDKVAQLRRG 599


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/739 (37%), Positives = 408/739 (55%), Gaps = 31/739 (4%)

Query: 100  VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
            V  WN  + R ++      A   F+ M+      D  TF  +L     L     G  +H 
Sbjct: 900  VIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHG 959

Query: 160  VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            ++  SG D  V V N L+ MY +  ++S AR +F +M +    D++SWNT+++    SG 
Sbjct: 960  IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNE---VDLISWNTMISGCTLSGL 1016

Query: 220  AEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-GTWSRGKQ---CGMMEEAKKVFERM 275
             E  + +F  +  D  +  D  ++ + L AC+SL G +    Q   C M           
Sbjct: 1017 EECSVGMFVHLLRD-SLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGV------- 1068

Query: 276  KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             V D     A++  YS+ G  E+A  LF  + Q+   L   +W+A++ GY   G   +AL
Sbjct: 1069 -VLDSFVSTALIDVYSKRGKMEEAEFLF--VNQDGFDL--ASWNAIMHGYIVSGDFPKAL 1123

Query: 336  DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
             ++  MQ  G   + +TLV+       +  L  GK+ H   +KR  ++D      L V +
Sbjct: 1124 RLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLD------LFVTS 1177

Query: 396  ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
             ++DMY KC  ++ AR +F  I P   DVA WT MI    +NG    AL  + QM  +  
Sbjct: 1178 GVLDMYLKCGEMESARRVFSEI-PSPDDVA-WTTMISGCVENGQEEHALFTYHQM--RLS 1233

Query: 456  LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
             V+P+ +T +  + AC+ L AL  GRQIHA +++       PFV   L+DMY++ G+I+ 
Sbjct: 1234 KVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNC-AFDPFVMTSLVDMYAKCGNIED 1292

Query: 516  ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
            AR +F     R + SW +++ G   HG   +A   F  M+  G+ PD VTF+ +L ACSH
Sbjct: 1293 ARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSH 1352

Query: 576  SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            SG+V +  + F SM K +GI    EHY+C+VD L RA R++EA ++I  MP E +  ++ 
Sbjct: 1353 SGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYR 1412

Query: 636  ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
             LLN CR+  + E G+  A +LL LE     +Y LLSN+YA A +W++VA  R++M+   
Sbjct: 1413 TLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVN 1472

Query: 696  VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
            VKK PG SWV  K     F  GDR+H ++  IY  +  +++RI+  GYVP T FAL DV+
Sbjct: 1473 VKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVE 1532

Query: 756  DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
            +E+K   L+ HSEKLA+AYG++ T P T +R+ KNLR+CGDCHSAI +IS +   EI+LR
Sbjct: 1533 EEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLR 1592

Query: 816  DSNRFHHFKEGSCTCKGYW 834
            D+NRFHHF+ G C+C  YW
Sbjct: 1593 DANRFHHFRNGICSCGDYW 1611



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 152/611 (24%), Positives = 262/611 (42%), Gaps = 70/611 (11%)

Query: 43   LLRQCKSLTQVYL---IHQQIIVQNLTHVP----PSHLIAAYVSHNAPSPALSLLQRISP 95
            +LRQ  + + + L    H +I+     H P     ++LI  Y    + S A  L      
Sbjct: 662  ILRQAIAASDLSLGKRAHARILTSG--HHPDRFVTNNLITMYAKCGSLSSARKLFDTTPD 719

Query: 96   SPFSVFWWNALIRR-AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
            +   +  WNA++   A       + F LF  + R       +T   V K C    S    
Sbjct: 720  TNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSAS 779

Query: 155  SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             S+H      G   +VFV  AL+ +YA+   +  AR LFD M    + D+V WN ++ AY
Sbjct: 780  ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGM---AVRDVVLWNVMMKAY 836

Query: 215  AQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
              +      ++LF+    TG    + D V          +L T SR  +C      K + 
Sbjct: 837  VDTCLEYEAMLLFSEFHRTG---FRPDDV----------TLRTLSRVVKC-----KKNIL 878

Query: 273  ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
            E   +K   ++   +  Y   GS                  +V+ W+  ++ + QRG   
Sbjct: 879  E---LKQFKAYATKLFMYDDDGS------------------DVIVWNKALSRFLQRGEAW 917

Query: 333  EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
            EA+D F  M    +  + +T V +L+  A +  L LGK+ H   ++  L       D ++
Sbjct: 918  EAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGL-------DQVV 970

Query: 393  VI-NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
             + N LI+MY K  SV  AR +F  +     D+ +W  MI   + +G    ++ +F  + 
Sbjct: 971  SVGNCLINMYVKAGSVSRARSVFGQM--NEVDLISWNTMISGCTLSGLEECSVGMFVHLL 1028

Query: 452  QQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
            +   L  P+ FT++  L AC+ L        QIHA  ++    +L  FV+  LID+YS+ 
Sbjct: 1029 RDSLL--PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGV-VLDSFVSTALIDVYSKR 1085

Query: 511  GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            G ++ A  +F N    ++ SW ++M GY + G   KA   +  M++ G   D +T +   
Sbjct: 1086 GKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAA 1145

Query: 571  YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
             A      + QG K   ++  + G +      + ++D+  +   ++ A  +   +P  P 
Sbjct: 1146 KAAGGLVGLKQG-KQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPD 1203

Query: 631  PIIWVALLNGC 641
             + W  +++GC
Sbjct: 1204 DVAWTTMISGC 1214



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 10/216 (4%)

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L    +   L LGK  H     R+L+  G HPD   V N LI MYAKC S+  AR +F
Sbjct: 661 SILRQAIAASDLSLGKRAHA----RILT-SGHHPDRF-VTNNLITMYAKCGSLSSARKLF 714

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGG-ANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           D     NRD+ TW  ++ + + +   ++D   LF  +  +  +V     TL+     C  
Sbjct: 715 DTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLL--RRSVVSTTRHTLAPVFKMCLL 772

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
            A+      +H Y ++   +  + FVA  L+++Y++ G I  ARV+FD +  R+VV W  
Sbjct: 773 SASPSASESLHGYAVKIGLQWDV-FVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNV 831

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           +M  Y    L  +A   F +  + G  PD VT   L
Sbjct: 832 MMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/732 (37%), Positives = 416/732 (56%), Gaps = 48/732 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NA+I   +R    + A  LF QM      P+   F + +   G + + R G +      
Sbjct: 83  YNAMISGYLRNSKFNLARNLFDQM------PERDLFSWNVMLTGYVRNCRLGDARRLFDL 136

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + +V   N+L++ YA+   +  AR++FD M +    + +SWN ++AAY  +G  E 
Sbjct: 137 MP--EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK---NSISWNGLLAAYVHNGRIEE 191

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +LF     + K   D +S  N L     +G + R K+ G   +A+ +F++M V+D +S
Sbjct: 192 ACLLF-----ESKSDWDLISW-NCL-----MGGFVRKKKLG---DARWLFDKMPVRDAIS 237

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           WN M++GY++ G    A  LF     E+   +V TW+A+++GY Q G   EA   F +M 
Sbjct: 238 WNTMISGYAQGGGLSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
               E N V+  ++++G      + + +E       R +S            N +I  Y 
Sbjct: 294 ----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS----------WNTMITGYG 339

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +   +  AR  FD +    RD  +W  +I  Y+Q+G   +AL +F ++ Q  + +  N  
Sbjct: 340 QIGDIAQARKFFDMMP--QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL--NRA 395

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T  CAL  CA +AAL  G+QIH   ++  Y     FV N L+ MY + G ID A   F+ 
Sbjct: 396 TFGCALSTCADIAALELGKQIHGQAVKMGYGTGC-FVGNALLAMYFKCGSIDEANDTFEG 454

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +++++VVSW +++ GY  HG G +A   F+ M+  G+ PD +T + +L ACSH+G++D+G
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            +YF SM+K++G+   ++HY C++DLLGRA RL+EA +LI  MP +P    W ALL   R
Sbjct: 515 TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASR 574

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH N ELGE AA  + ++E +  G Y LLSN+YA +GRW D  ++RS M+  GV+K PG 
Sbjct: 575 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGY 634

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWV+ +    TF VGD +HP+ ++IY  L  L  +++  GYV  T   LHDV++EEK  +
Sbjct: 635 SWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHM 694

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLA+A+GILT   G PIR+ KNLR+C DCHSAI  IS I+   IILRDS+RFHH
Sbjct: 695 LKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHH 754

Query: 823 FKEGSCTCKGYW 834
           F EG C+C  YW
Sbjct: 755 FNEGFCSCGDYW 766



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 209/465 (44%), Gaps = 60/465 (12%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           DI+ WN  ++ + ++G  +  L +F  M              +++S  A +  + R  + 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM-----------PRRSSVSYNAMISGYLRNSKF 96

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
            +   A+ +F++M  +D+ SWN M+TGY R     DA  LF  M ++    +VV+W++++
Sbjct: 97  NL---ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK----DVVSWNSLL 149

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG-----ALLLGKET----- 372
           +GYAQ G+  EA +VF  M     E N ++   LL+     G      LL   ++     
Sbjct: 150 SGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205

Query: 373 --HC----YTIKRVLS-----VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
             +C    +  K+ L       D     D +  N +I  YA+   +  AR +FD  +P  
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE-SP-T 263

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           RDV TWT M+  Y QNG  ++A   F      D++ + N  + +  +    +   +   R
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAKTFF------DEMPEKNEVSYNAMIAGYVQTKKMDIAR 317

Query: 482 QI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           ++  +   RN          N +I  Y + GDI  AR  FD + QR+ VSW +++ GY  
Sbjct: 318 ELFESMPCRNISSW------NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQ 371

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
            G  ++A   F +++++G + +  TF   L  C+    ++ G K     + + G      
Sbjct: 372 SGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG-KQIHGQAVKMGYGTGCF 430

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
               ++ +  +   +DEA +  EG+  E   + W  +L G   H 
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHG 474



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 127/270 (47%), Gaps = 61/270 (22%)

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
            LV++Y    +G++D G +YF  M++E+ ++  ++HY C++DLLGR +RL+E        
Sbjct: 771 LLVVIY----TGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG------- 819

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
                     ALL   RIH N ELGE AA    ++  +  G                   
Sbjct: 820 ----------ALLGASRIHGNTELGEKAAQMFFKMGPQNSGI------------------ 851

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
              S M+  GV+K PG SW + +    TF VG     + + I              G++ 
Sbjct: 852 ---SKMRDVGVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLE 894

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI-TKNLRICGDCHSAITFI 804
           +    + + ++E++  L +  SE LA A GILT   G P R+  K + +C DC SAI  +
Sbjct: 895 ELDLKMREREEEKERTLKY-LSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHM 953

Query: 805 SMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           S I+   I LRDS   H F E  C+C  YW
Sbjct: 954 SKIVGRLITLRDS---HRFNESICSCGEYW 980


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/732 (37%), Positives = 416/732 (56%), Gaps = 48/732 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NA+I   +R    + A  LF QM      P+   F + +   G + + R G +      
Sbjct: 83  YNAMISGYLRNSKFNLARNLFDQM------PERDLFSWNVMLTGYVRNCRLGDARRLFDL 136

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + +V   N+L++ YA+   +  AR++FD M +    + +SWN ++AAY  +G  E 
Sbjct: 137 MP--EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK---NSISWNGLLAAYVHNGRIEE 191

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +LF     + K   D +S  N L     +G + R K+ G   +A+ +F++M V+D +S
Sbjct: 192 ACLLF-----ESKSDWDLISW-NCL-----MGGFVRKKKLG---DARWLFDKMPVRDAIS 237

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           WN M++GY++ G    A  LF     E+   +V TW+A+++GY Q G   EA   F +M 
Sbjct: 238 WNTMISGYAQGGGLSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
               E N V+  ++++G      + + +E       R +S            N +I  Y 
Sbjct: 294 ----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS----------WNTMITGYG 339

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +   +  AR  FD +    RD  +W  +I  Y+Q+G   +AL +F ++ Q  + +  N  
Sbjct: 340 QIGDIAQARKFFDMMP--QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL--NRA 395

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T  CAL  CA +AAL  G+QIH   ++  Y     FV N L+ MY + G ID A   F+ 
Sbjct: 396 TFGCALSTCADIAALELGKQIHGQAVKMGYGTGC-FVGNALLAMYFKCGSIDEANDTFEG 454

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +++++VVSW +++ GY  HG G +A   F+ M+  G+ PD +T + +L ACSH+G++D+G
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            +YF SM+K++G+   ++HY C++DLLGRA RL+EA +LI  MP +P    W ALL   R
Sbjct: 515 TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASR 574

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH N ELGE AA  + ++E +  G Y LLSN+YA +GRW D  ++RS M+  GV+K PG 
Sbjct: 575 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGY 634

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWV+ +    TF VGD +HP+ ++IY  L  L  +++  GYV  T   LHDV++EEK  +
Sbjct: 635 SWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHM 694

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLA+A+GILT   G PIR+ KNLR+C DCHSAI  IS I+   IILRDS+RFHH
Sbjct: 695 LKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHH 754

Query: 823 FKEGSCTCKGYW 834
           F EG C+C  YW
Sbjct: 755 FNEGFCSCGDYW 766



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 207/465 (44%), Gaps = 60/465 (12%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           DI+ WN  ++ + ++G  +  L +F  M              +++S  A +  + R  + 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM-----------PRRSSVSYNAMISGYLRNSKF 96

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
            +   A+ +F++M  +D+ SWN M+TGY R     DA  LF  M ++    +VV+W++++
Sbjct: 97  NL---ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK----DVVSWNSLL 149

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG-----ALLLGKET----- 372
           +GYAQ G+  EA +VF  M     E N ++   LL+     G      LL   ++     
Sbjct: 150 SGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205

Query: 373 --HC----YTIKRVLS-----VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
             +C    +  K+ L       D     D +  N +I  YA+   +  AR +FD      
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD--ESPT 263

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           RDV TWT M+  Y QNG  ++A   F      D++ + N  + +  +    +   +   R
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAKTFF------DEMPEKNEVSYNAMIAGYVQTKKMDIAR 317

Query: 482 QI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           ++  +   RN          N +I  Y + GDI  AR  FD + QR+ VSW +++ GY  
Sbjct: 318 ELFESMPCRNISSW------NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQ 371

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
            G  ++A   F +++++G + +  TF   L  C+    ++ G K     + + G      
Sbjct: 372 SGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG-KQIHGQAVKMGYGTGCF 430

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
               ++ +  +   +DEA +  EG+  E   + W  +L G   H 
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHG 474


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 406/746 (54%), Gaps = 36/746 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR---CGSSVHA 159
           WN+LI         + A   F  M+     P  +T   V+ AC  LP       G  VHA
Sbjct: 80  WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 139

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G + N F+ N L+AMY +   L+ ++ L       G  D+V+WNT++++  Q+  
Sbjct: 140 YGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSF---GGRDLVTWNTVLSSLCQNEQ 195

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L     M  +  V+ D  ++ + L AC+ L     GK+           +    ++
Sbjct: 196 LLEALEYLREMVLE-GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD----EN 250

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               +A+V  Y           +F  M    + L    W+A+IAGY+Q  H  EAL +F 
Sbjct: 251 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL----WNAMIAGYSQNEHDKEALLLFI 306

Query: 340 QMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            M+   GL  N  T+  ++  C   GA    +  H + +KR L        D  V N L+
Sbjct: 307 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD------RDRFVQNTLM 360

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV- 457
           DMY++   +D+A  +F  +  ++RD+ TW  MI  Y  +    DAL L  +M   ++ V 
Sbjct: 361 DMYSRLGKIDIAMRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 418

Query: 458 --------KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
                   KPN+ TL   L +CA L+AL  G++IHAY ++N     +  V + L+DMY++
Sbjct: 419 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAK 477

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G +  +R VFD + Q+NV++W  ++  YGMHG G +A      M  +G+ P+ VTF+ +
Sbjct: 478 CGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISV 537

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
             ACSHSGMVD+GL+ F  M  ++G+   ++HYAC+VDLLGRA R+ EA +L+  MP + 
Sbjct: 538 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDF 597

Query: 630 TPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
                W +LL   RIH N+E+GE+AA  L++LE      Y LL+NIY++AG W     +R
Sbjct: 598 NKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVR 657

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
             MK  GV+K PGCSW++  +    F  GD +HPQS+K+   L  L +R++  GYVP TS
Sbjct: 658 RNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTS 717

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
             LH+V+++EK  LL  HSEKLA+A+GIL T+PGT IR+ KNLR+C DCH A  FIS I+
Sbjct: 718 CVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIV 777

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
           + EIILRD  RFH FK G+C+C  YW
Sbjct: 778 DREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/583 (26%), Positives = 275/583 (47%), Gaps = 41/583 (7%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARCD 184
           M+  G  PD Y FP +LKA  +L     G  +HA +   G+   +V V N L+ +Y +C 
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
                 ++FD + +    + VSWN+++++       E  L  F R   D  V+    +LV
Sbjct: 61  DFGAVYKVFDRISER---NQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTLV 116

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           + ++AC++L     G   G    A  +  R    +    N +V  Y ++G    +  L  
Sbjct: 117 SVVTACSNL-PMPEGLMMGKQVHAYGL--RKGELNSFIINTLVAMYGKLGKLASSKVLLG 173

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
                    ++VTW+ V++   Q     EAL+  R+M   G+EP+  T+ S+L  C+ + 
Sbjct: 174 SFGGR----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 229

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            L  GKE H Y +K     +GS  ++  V +AL+DMY  CK V   R +FD +   +R +
Sbjct: 230 MLRTGKELHAYALK-----NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF--DRKI 282

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             W  MI  YSQN    +AL LF  M +   L+  N+ T++  + AC R  A      IH
Sbjct: 283 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAIH 341

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
            +V++   +    FV N L+DMYSR G ID A  +F  ++ R++V+W +++TGY      
Sbjct: 342 GFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 400

Query: 545 DKAHWAFDQMR-----------KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           + A     +M+           +  L P+ +T + +L +C+    + +G K   + + + 
Sbjct: 401 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYAIKN 459

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            ++      + +VD+  +   L  + ++ + +P +   I W  ++    +H N   G+ A
Sbjct: 460 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQEA 515

Query: 654 AN--RLLELESEKDGSYTLLSNIYA--NAGRWKDVARIRSLMK 692
            +  R++ ++  K    T +S   A  ++G   +  RI  +MK
Sbjct: 516 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 558


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 271/751 (36%), Positives = 416/751 (55%), Gaps = 79/751 (10%)

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
           K C E  +      +H +I  S  +   F+ N L+  Y++   ++YAR +FD+M QP   
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQP--- 69

Query: 203 DIVSWNTIVAAYAQSGDAE---------------------GGLMLFARMTGDVK----VQ 237
           +  SWNT+++AY++SGD                        G + +  +   VK    + 
Sbjct: 70  NSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 238 GDGVSLVNALS-----------ACASLGTWSRGK---------------------QCGMM 265
            DGV  +N ++            C  LG    G+                     + G++
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
             A +VF+ ++ ++VV +N M+TG  R G  +D+  LF  M++ +     ++W+ +I G 
Sbjct: 190 SVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDS----ISWTTMITGL 245

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            Q G   EA+D+FR M+  G+  +  T  S+L+ C  + AL  GKE H   I+       
Sbjct: 246 IQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIR------S 299

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
            +  ++ V +AL+DMY KC+SV  A  +F  +A  N++V +WT M+  Y QNG + +A+ 
Sbjct: 300 GYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMA--NKNVVSWTAMLVGYGQNGFSEEAVR 357

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--VANCL 503
           +F  M  Q   ++P+ FTL   + +CA LA+L  G Q H   L +    LI F  V+N L
Sbjct: 358 VFCDM--QRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG---LISFITVSNAL 412

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           I +Y + G I+ +  +FD +  R+ VSWT+L++GY   G  ++    F++M  +GL PD 
Sbjct: 413 ITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDA 472

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           VTF+ +L ACS +G+V++G +YF+SM K+ GI   ++HY C++DL GRA RL+EA   I 
Sbjct: 473 VTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFIN 532

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            MP  P  I W  LL+ CR++ N E+G+ AA  LLEL+ +    Y LLS+IYA  G+W +
Sbjct: 533 KMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSN 592

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           VA++R  M+  G +K PG SW++ K     F   D++ P S +IY  L  L  ++   GY
Sbjct: 593 VAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGY 652

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           VP  S  LHDV+D EK  +L  HSEKLA+A+G+L    G PIR+ KNLR+CGDCH+A  +
Sbjct: 653 VPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKY 712

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS I   EI++RD+ RFH FK+G+C+C  +W
Sbjct: 713 ISKISQREILVRDAVRFHLFKDGTCSCGDFW 743


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/741 (35%), Positives = 416/741 (56%), Gaps = 38/741 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+L+      R  D  + LF  M   G+ PD YT   V+ A     +   G  +HA
Sbjct: 168 VVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA 227

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           ++   GF++   VCN+L++M ++   L  AR +FD M      D VSWN+++A +  +G 
Sbjct: 228 LVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENK---DSVSWNSMIAGHVINGQ 284

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                  F  M      +    +  + + +CASL      K+ G++    +V     +K 
Sbjct: 285 DLEAFETFNNMQL-AGAKPTHATFASVIKSCASL------KELGLV----RVLHCKTLKS 333

Query: 280 VVSWN-----AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            +S N     A++   ++    +DAF+LF  M       +VV+W+A+I+GY Q G   +A
Sbjct: 334 GLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQ---SVVSWTAMISGYLQNGDTDQA 390

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           +++F  M+  G++PN  T  ++L+    V   +   E H   IK       S      V 
Sbjct: 391 VNLFSLMRREGVKPNHFTYSTILT----VQHAVFISEIHAEVIKTNYEKSSS------VG 440

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            AL+D + K  ++  A  +F+ I  K  DV  W+ M+  Y+Q G   +A  +F Q+ ++ 
Sbjct: 441 TALLDAFVKIGNISDAVKVFELIETK--DVIAWSAMLAGYAQAGETEEAAKIFHQLTREG 498

Query: 455 KLVKPNAFTLSCALMAC-ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
             +KPN FT    + AC A  A++  G+Q HAY ++ +    +  V++ L+ +Y++ G+I
Sbjct: 499 --IKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALC-VSSSLVTLYAKRGNI 555

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           ++A  +F   K+R++VSW S+++GY  HG   KA   F++M+K  L  D +TF+ ++ AC
Sbjct: 556 ESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISAC 615

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +H+G+V +G  YF+ M  +  I+   EHY+C++DL  RA  L +A+++I GMP  P   +
Sbjct: 616 AHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATV 675

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W  +L   R+H N+ELG+LAA +++ LE +   +Y LLSNIYA AG W +   +R LM  
Sbjct: 676 WRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDK 735

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             VKK PG SW++ K  T +F  GD +HP S  IY  L+ L  R++ +GY P T++  HD
Sbjct: 736 RRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHD 795

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           ++DE+K  +L  HSE+LA+A+G++ T P  P++I KNLR+CGDCHS I  +S++    I+
Sbjct: 796 IEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIV 855

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RDSNRFHHFK G C+C  YW
Sbjct: 856 VRDSNRFHHFKGGLCSCGDYW 876



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 162/597 (27%), Positives = 268/597 (44%), Gaps = 100/597 (16%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           N L+ R  R      A  LF+ + R G  PD YT   VL  C    +   G  VH     
Sbjct: 71  NQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVK 130

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
            G   ++ V N+L+ MY +   +   R++FDEM   G  D+VSWN+++  Y+ +   +  
Sbjct: 131 CGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEM---GDRDVVSWNSLLTGYSWNRFNDQV 187

Query: 224 LMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQ------------------- 261
             LF  M    +V+G   D  ++   ++A A+ G  + G Q                   
Sbjct: 188 WELFCLM----QVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNS 243

Query: 262 -------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                   GM+ +A+ VF+ M+ KD VSWN+M+ G+   G   +AF  F           
Sbjct: 244 LISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN---------- 293

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
                                     MQ  G +P   T  S++  CAS+  L L +  HC
Sbjct: 294 -------------------------NMQLAGAKPTHATFASVIKSCASLKELGLVRVLHC 328

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
            T+K  LS + +      V+ AL+    KCK +D A  +F ++    + V +WT MI  Y
Sbjct: 329 KTLKSGLSTNQN------VLTALMVALTKCKEIDDAFSLF-SLMHGVQSVVSWTAMISGY 381

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
            QNG  + A+ LF  M ++   VKPN FT S  L     +    F  +IHA V++  YE 
Sbjct: 382 LQNGDTDQAVNLFSLMRREG--VKPNHFTYSTILTVQHAV----FISEIHAEVIKTNYEK 435

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
               V   L+D + + G+I  A  VF+ ++ ++V++W++++ GY   G  ++A   F Q+
Sbjct: 436 -SSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQL 494

Query: 555 RKEGLAPDGVTFLVLLYACSH-SGMVDQGLKYFDSMSKEFGISARAEHYACI----VDLL 609
            +EG+ P+  TF  ++ AC+  +  V+QG ++       + I  R  +  C+    V L 
Sbjct: 495 TREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTLY 549

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN----VELGELAANRLLELES 662
            +   ++ A E+ +    E   + W ++++G   H      +E+ E    R LE+++
Sbjct: 550 AKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDA 605



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 227/502 (45%), Gaps = 56/502 (11%)

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
           +A+QLFD   Q  + D+   N ++  Y++    +  L LF  +     +  D  ++   L
Sbjct: 54  FAQQLFD---QTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRS-GLSPDSYTMSCVL 109

Query: 248 SACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAF 300
           S CA     + G+Q       CG+            V  +   N++V  Y++ G+  D  
Sbjct: 110 SVCAGSFNGTVGEQVHCQCVKCGL------------VHHLSVGNSLVDMYTKTGNVRDGR 157

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            +F +M   +V    V+W++++ GY+      +  ++F  MQ  G  P+  T+ ++++  
Sbjct: 158 RVFDEMGDRDV----VSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAAL 213

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A+ GA+ +G + H   +K     +       +V N+LI M +K   +  ARV+FD +  +
Sbjct: 214 ANQGAVAIGMQIHALVVKLGFETER------LVCNSLISMLSKSGMLRDARVVFDNM--E 265

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           N+D  +W  MI  +  NG   +A   F  M  Q    KP   T +  + +CA L  L   
Sbjct: 266 NKDSVSWNSMIAGHVINGQDLEAFETFNNM--QLAGAKPTHATFASVIKSCASLKELGLV 323

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-RNVVSWTSLMTGYG 539
           R +H   L++        V   L+   ++  +ID A  +F  +   ++VVSWT++++GY 
Sbjct: 324 RVLHCKTLKSGLST-NQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYL 382

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL---YACSHSGMVDQGLKYFDSMSKEFGIS 596
            +G  D+A   F  MR+EG+ P+  T+  +L   +A   S +  + +K     S   G +
Sbjct: 383 QNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTA 442

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
                   ++D   +   + +AV++ E +  +   I W A+L G   +A     E AA  
Sbjct: 443 --------LLDAFVKIGNISDAVKVFELIETKDV-IAWSAMLAG---YAQAGETEEAAKI 490

Query: 657 LLELESE--KDGSYTLLSNIYA 676
             +L  E  K   +T  S I A
Sbjct: 491 FHQLTREGIKPNEFTFCSIINA 512



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 134/258 (51%), Gaps = 35/258 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W A+I   ++    D A  LF  M R G  P+ +T+  +L     +  +   S +H
Sbjct: 370 SVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT----VQHAVFISEIH 425

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  + ++ +  V  AL+  + +   +S A ++F E+ +    D+++W+ ++A YAQ+G
Sbjct: 426 AEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF-ELIETK--DVIAWSAMLAGYAQAG 482

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSAC-ASLGTWSRGKQ--------------C- 262
           + E    +F ++T +  ++ +  +  + ++AC A   +  +GKQ              C 
Sbjct: 483 ETEEAAKIFHQLTRE-GIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCV 541

Query: 263 -----------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                      G +E A ++F+R K +D+VSWN+M++GY++ G  + A  +F++M++ N+
Sbjct: 542 SSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNL 601

Query: 312 KLNVVTWSAVIAGYAQRG 329
           +++ +T+  VI+  A  G
Sbjct: 602 EVDAITFIGVISACAHAG 619



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 20/308 (6%)

Query: 56  IHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH ++I  N        + L+ A+V     S A+ + + I      V  W+A++    + 
Sbjct: 424 IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETK--DVIAWSAMLAGYAQA 481

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSVHAVICSSGFDSNVFV 172
              + A ++F Q+ R G  P+E+TF  ++ AC     S   G   HA       ++ + V
Sbjct: 482 GETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCV 541

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
            ++L+ +YA+   +  A ++F    +    D+VSWN++++ YAQ G A+  L +F  M  
Sbjct: 542 SSSLVTLYAKRGNIESAHEIFKRQKER---DLVSWNSMISGYAQHGQAKKALEVFEEMQK 598

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
              ++ D ++ +  +SACA  G   +G+    +M     +   M+      ++ M+  YS
Sbjct: 599 R-NLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTME-----HYSCMIDLYS 652

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           R G    A  +   M           W  V+A  A R H +  L      +   LEP   
Sbjct: 653 RAGMLGKAMDIINGMP---FPPAATVWRIVLA--ASRVHRNIELGKLAAEKIISLEPQHS 707

Query: 352 TLVSLLSG 359
               LLS 
Sbjct: 708 AAYVLLSN 715


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/669 (39%), Positives = 392/669 (58%), Gaps = 42/669 (6%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + +V   NA+++ YA+   +  A+++FDEM      + +SWN ++AAY Q+G  E    L
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIFDEM---PCKNSISWNGMLAAYVQNGRIEDARRL 114

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F     + K   + +S       C   G   R +    + +A+ +F+RM  +D VSWN M
Sbjct: 115 F-----ESKADWELISW-----NCMMGGYVKRNR----LVDARGIFDRMPERDEVSWNTM 160

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           ++GY++ G   +A  LF    +E+   +V TW+A+++GY Q G   EA  VF  M     
Sbjct: 161 ISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP---- 212

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMYAKCK 405
           E N V+  ++++G              C  + +   +  + P  ++   N +I  YA+  
Sbjct: 213 EKNSVSWNAIIAGY-----------VQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNG 261

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +  AR  FD +    RD  +W  +I  Y+Q+G   +AL LF +M +  + +  + FT  
Sbjct: 262 DIAQARNFFDRMP--QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT-- 317

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L  CA +AAL  G+Q+H  V++   E    +V N L+ MY + G+ID A +VF+ +++
Sbjct: 318 STLSTCAEIAALELGKQVHGRVVKAGLESGC-YVGNALLVMYCKCGNIDDAYIVFEGIEE 376

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           + VVSW +++ GY  HG G +A   F+ M+K G+ PD VT + +L ACSH+G+VD+G +Y
Sbjct: 377 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 436

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F SM++++GI+A ++HY C++DLLGRA RLD+A  L++ MP EP    W ALL   RIH 
Sbjct: 437 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 496

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N ELGE AA  + E+E +  G Y LLSN+YA +GRW DV R+R  M+  GVKK PG SWV
Sbjct: 497 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 556

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + +    TF VGD  HP+  +IY  L  L  ++K  GYV  T   LHDV++EEK  +L  
Sbjct: 557 EVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKY 616

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+GIL    G PIR+ KNLR+C DCH+A+  IS I+   IILRDS+RFHHF  
Sbjct: 617 HSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNG 676

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 677 GQCSCGDYW 685



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 27/318 (8%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           QCK + Q   + + +  QN++    + +I  Y  +   + A +   R+ P   S+ W  A
Sbjct: 228 QCKRMDQARELFEAMPCQNVS--SWNTMITGYAQNGDIAQARNFFDRM-PQRDSISW-AA 283

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +I    +    + A  LF++M R G   +  TF   L  C E+ +   G  VH  +  +G
Sbjct: 284 IIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG 343

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            +S  +V NAL+ MY +C  +  A  +F+ + +    ++VSWNT++A YA+ G  +  LM
Sbjct: 344 LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK---EVVSWNTMIAGYARHGFGKEALM 400

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           LF  M     +  D V++V  LSAC+           G++++  + F  M     ++ N+
Sbjct: 401 LFESMK-KTGILPDDVTMVGVLSACS---------HTGLVDKGTEYFYSMTQDYGITANS 450

Query: 286 -----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
                M+    R G  +DA  L K M  E    +  TW A++   A R HG+  L     
Sbjct: 451 KHYTCMIDLLGRAGRLDDAQNLMKNMPFEP---DAATWGALLG--ASRIHGNTELGEKAA 505

Query: 341 MQFCGLEPNVVTLVSLLS 358
                +EP+   +  LLS
Sbjct: 506 KMIFEMEPDNSGMYVLLS 523



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 163/397 (41%), Gaps = 91/397 (22%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           +I+ Y  +     A  L +    SP   VF W A++   V+  + D A R+F  M     
Sbjct: 160 MISGYAQNGELLEAQRLFEE---SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM----- 211

Query: 132 HPDEYTFPFVLKACGELPSSRCGSS---VHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            P++ +  +     G +   R   +     A+ C      NV   N ++  YA+   ++ 
Sbjct: 212 -PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC-----QNVSSWNTMITGYAQNGDIAQ 265

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR  FD M Q    D +SW  I+A YAQSG  E  L LF  M  D + + +  +  + LS
Sbjct: 266 ARNFFDRMPQR---DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLS 321

Query: 249 ACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVS 282
            CA +     GKQ                          CG +++A  VFE ++ K+VVS
Sbjct: 322 TCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVS 381

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           WN M+ GY+R G  ++A  LF+ M++                                  
Sbjct: 382 WNTMIAGYARHGFGKEALMLFESMKK---------------------------------- 407

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKET-HCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             G+ P+ VT+V +LS C+  G +  G E  +  T    ++ +  H         +ID+ 
Sbjct: 408 -TGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH------YTCMIDLL 460

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            +   +D A+ +   + P   D ATW  ++G+   +G
Sbjct: 461 GRAGRLDDAQNLMKNM-PFEPDAATWGALLGASRIHG 496



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 20/197 (10%)

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           R  ++  AR++FD + +R+VVSW ++++GY  +G   +A   FD+M       + +++  
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNG 97

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L A   +G ++   + F+S +    IS     + C++    + NRL +A  + + MP E
Sbjct: 98  MLAAYVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMP-E 151

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIYANAGRWKDVARI 687
              + W  +++G     N EL  L A RL E    +D  ++T + + Y   G   +  R+
Sbjct: 152 RDEVSWNTMISG--YAQNGEL--LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 207

Query: 688 RSLMKHTGVKKRPGCSW 704
                  G+ ++   SW
Sbjct: 208 -----FDGMPEKNSVSW 219


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 281/726 (38%), Positives = 403/726 (55%), Gaps = 90/726 (12%)

Query: 169 NVFVC-------NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
           N F C       N+L+  Y+R   +  AR +FDEM      +I+SWN+IVA Y Q+   +
Sbjct: 90  NRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDK---NIISWNSIVAGYFQNKRPQ 146

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
               +F +M+    +  +G  LV+                 GM+ EA++VF+RM  ++VV
Sbjct: 147 EAQNMFDKMSERNTISWNG--LVSGYI------------NNGMINEAREVFDRMPERNVV 192

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SW AMV GY + G   +A  LF +M ++NV    V+W+ ++ G  Q G   EA  +F  M
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMM 248

Query: 342 QFCGLEPNVVTLVSLLSGCASVGAL----------------------------------- 366
                E +VVT  +++ G   VG L                                   
Sbjct: 249 P----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIAR 304

Query: 367 ----------------LLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMYAKCKSVDV 409
                           +L   T+C  +     +  + P   ++  NA+I  + +   V  
Sbjct: 305 KLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPK 364

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +FD +  + +D  TW+ MI  Y + G   DAL LF  M  Q + ++PN  +L   L 
Sbjct: 365 ARQVFDQM--REKDEGTWSAMIKVYERKGLELDALELFRMM--QREGIRPNFPSLISVLS 420

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            CA LA L  GR+IHA ++R+Q+++ + +VA+ L+ MY + G++  A+ VFD    ++VV
Sbjct: 421 VCAGLANLDHGREIHAQLVRSQFDLDV-YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVV 479

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
            W S++TGY  HGLG +A   F  M   G+ PD VTF+ +L ACS++G V +GL+ F+SM
Sbjct: 480 MWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
             ++ +  + EHYAC+VDLLGRA +L+EA++LIE MPME   IIW ALL  CR H  ++L
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            E+AA +LL LE +  G + LLSNIYA+ GRW DVA +R  M+   V K PGCSW+  ++
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEK 659

Query: 710 GTATFFVGDRT-HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
               F  GD + HP+  +I  IL  L   ++  GY P  SF LHDVD+EEK   L  HSE
Sbjct: 660 KVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSE 719

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLA+AYG+L    G PIR+ KNLR+CGDCH+AI  I+ +   EIILRD+NRFHHFK+GSC
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 829 TCKGYW 834
           +C+ YW
Sbjct: 780 SCRDYW 785



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 116/256 (45%), Gaps = 13/256 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I+   R  L  +A  LF  M R G  P+  +   VL  C  L +   G  +HA + 
Sbjct: 380 WSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLV 439

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S FD +V+V + L++MY +C  L+ A+Q+FD      + D+V WN+I+  YAQ G    
Sbjct: 440 RSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF---AVKDVVMWNSIITGYAQHGLGVE 496

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M     +  D V+ V  LSAC+  G   +G +     E K   E    + +  
Sbjct: 497 ALRVFHDMHFS-GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE----QKIEH 551

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +  MV    R G   +A  L +KM  E    + + W A++   A R H    L      +
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPME---ADAIIWGALLG--ACRTHMKLDLAEVAAKK 606

Query: 343 FCGLEPNVVTLVSLLS 358
              LEP       LLS
Sbjct: 607 LLVLEPKNAGPFILLS 622


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/738 (38%), Positives = 414/738 (56%), Gaps = 30/738 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+   V+ R   +   LF +M   G  P+ +TF  VL A     +   G  VH
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A     G  S VFVCN+L+ MY++C  +  A+ +F +M      D+VSWNT++A    + 
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETR---DMVSWNTLMAGLLLNE 281

Query: 219 DAEGGLMLFARMTGDV-KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
                L LF      + K+     S V  L  CA+L   +  +Q         V +    
Sbjct: 282 HQLEALQLFHDSRASMAKLSQSTYSTVIKL--CANLKQLALARQL-----HSCVLKHGFH 334

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D     A++  YS+ G  +DAF +F  M       NVV+W+A+I G  Q      A  +
Sbjct: 335 SDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQ---NVVSWTAMIGGCIQNADIPLAAAL 391

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M+   ++PN  T  ++L+  AS+  LL   + H   IK       ++     V  AL
Sbjct: 392 FSRMREDNVKPNEFTYSTVLT--ASIPILL--PQIHAQIIKT------NYQHAPSVGTAL 441

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +  Y+K  + + A  +F  I   ++DV  W+ M+  YSQ G  + A  +F +M  Q   +
Sbjct: 442 LASYSKLGNTEEALSIFKMI--DHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQG--M 497

Query: 458 KPNAFTLSCALMACAR-LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           KPN FT+S A+ ACA   A +  GRQ HA  ++ +Y+  I  V + L+ MY+R G ID+A
Sbjct: 498 KPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAI-CVGSALVTMYARKGSIDSA 556

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R+VF+    R++VSW S+++GY  HG   +A   F QM   G+  DG TFL ++  C+H+
Sbjct: 557 RIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHA 616

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V +G +YFDSM  +  IS   EHY+C+VDL  RA +LDE + LIEGMP     ++W  
Sbjct: 617 GLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRT 676

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CR+H NVELG+LAA +LL LE +   +Y LLSNIYA AGRWK+   +R LM    V
Sbjct: 677 LLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKV 736

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK  GCSW+Q K    +F   D++HP S++IY  L  +  R+K  GY P TS  LHD+ +
Sbjct: 737 KKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAE 796

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E+K  +L  HSE+LALA+G++ T P TP++I KNLR+CGDCH  +  +S+I + EII+RD
Sbjct: 797 EQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRD 856

Query: 817 SNRFHHFKEGSCTCKGYW 834
            +RFHHF  G+C+C  +W
Sbjct: 857 CSRFHHFNAGACSCGDFW 874



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 185/387 (47%), Gaps = 24/387 (6%)

Query: 189 ARQLFDEMFQPGICDIVSWNTI-VAAYAQSGDAEG-GLMLFARMTGDVKVQGDGVSLVNA 246
           ARQ  D M         S N + +  Y + G   G  L  F  +    +VQG  VS V  
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQGAAVSRV-- 105

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L  C  +     G+Q   +   K  F+R +V       A+V  Y + G  ED   +F+ M
Sbjct: 106 LKVCGLIPDRVSGEQLHCLC-VKCGFDRAEVG---VGTALVDMYMKCGGVEDGRVVFEGM 161

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                K NVVTW++++ GY Q     + + +F +M+  G+ PN  T  S+LS  AS GA+
Sbjct: 162 P----KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAV 217

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LG+  H  ++K            + V N+LI+MY+KC  V+ A+ +F  +  + RD+ +
Sbjct: 218 DLGRRVHAQSVKFGCR------STVFVCNSLINMYSKCGLVEEAKAVFRQM--ETRDMVS 269

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  ++     N    +AL LF     +  + K +  T S  +  CA L  L   RQ+H+ 
Sbjct: 270 WNTLMAGLLLNEHQLEALQLFHD--SRASMAKLSQSTYSTVIKLCANLKQLALARQLHSC 327

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGD 545
           VL++ +      V   ++D YS+ G++D A  +F  +   +NVVSWT+++ G   +    
Sbjct: 328 VLKHGFHS-DGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIP 386

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYA 572
            A   F +MR++ + P+  T+  +L A
Sbjct: 387 LAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 25/260 (9%)

Query: 56  IHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH QII  N  H P   + L+A+Y        ALS+ + I      V  W+A++    + 
Sbjct: 422 IHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHK--DVVAWSAMLSCYSQA 479

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC--GSSVHAVICSSGFDSNVF 171
              D A  +F++M  +G  P+E+T    + AC   P++    G   HA+     +   + 
Sbjct: 480 GDCDGATNVFIKMSMQGMKPNEFTISSAIDACAS-PTAGIDQGRQFHAISIKYRYQDAIC 538

Query: 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT 231
           V +AL+ MYAR  ++  AR +F+        D+VSWN++++ YAQ G ++  L  F +M 
Sbjct: 539 VGSALVTMYARKGSIDSARIVFERQTDR---DLVSWNSMISGYAQHGYSKEALDTFRQME 595

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAM 286
             V ++ DG + +  +  C            G+++E ++ F+ M +   +S     ++ M
Sbjct: 596 -TVGIEMDGATFLAVIVGCT---------HAGLVKEGQQYFDSMVMDHNISPTMEHYSCM 645

Query: 287 VTGYSRIGSFEDAFALFKKM 306
           V  YSR G  ++   L + M
Sbjct: 646 VDLYSRAGKLDETMNLIEGM 665



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 16/238 (6%)

Query: 410 ARVMFDAIAPKNRDVATWT----VMIGSYSQNG-GANDALALFPQMFQQDKLVKPNAFTL 464
           AR   D +   +RD A  +    V I  Y + G G  +AL  F  + +  ++       +
Sbjct: 48  ARQALDGM--PSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRV---QGAAV 102

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           S  L  C  +     G Q+H   ++  ++     V   L+DMY + G ++  RVVF+ + 
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +RNVV+WTSL+TGY            F +MR EG+ P+  TF  +L A +  G VD G +
Sbjct: 163 KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLG-R 221

Query: 585 YFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              + S +FG   R+  + C  ++++  +   ++EA  +   M      + W  L+ G
Sbjct: 222 RVHAQSVKFG--CRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDM-VSWNTLMAG 276


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 292/832 (35%), Positives = 440/832 (52%), Gaps = 68/832 (8%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHL--------IAAYVSHNAPSPALSLLQRISP 95
           LR CK+L Q+  +H QI    L  +P +          IA+  S +    A  L +    
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S  ++F  N+LIR      L   A  L+++M+  G  P+ YTFPFVL  C ++ +   G 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH  +   G + +VF+ N L+  YA C  + +  ++F+ M +    ++VSW +++  YA
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER---NVVSWTSLICGYA 208

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-CGMMEEAKKVFER 274
           +    +  + LF  M  +  ++   V++V  +SACA L     G++ C  + E      +
Sbjct: 209 RGDRPKEAVSLFFEMV-EAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           + V      NA+V  Y + G+ + A  LF     E V  N+V ++ +++ YA++G   EA
Sbjct: 268 VMV------NALVDMYMKCGAIDAAKRLF----DECVDRNLVLYNTILSNYARQGLAREA 317

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L +  +M   G  P+ VT++S +S  A +  L  GK  H Y I+  L    S      + 
Sbjct: 318 LAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS------IG 371

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPK-----------------------------NRDVA 425
           N +IDMY KC   ++A  +FD ++ K                              R+  
Sbjct: 372 NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAV 431

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  MI    Q     DA+ LF +M  Q + +K +  T+     AC  L A    + +H 
Sbjct: 432 FWNTMISGLVQKSLFEDAIELFREM--QGEGIKADRVTMMGIASACGYLGAPELAKWVHT 489

Query: 486 YVLRNQYEMLIPF---VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           Y+ +N     IP    +   L+DM++R GD  +A  VF+ + +R+V +WT+ +    M G
Sbjct: 490 YIEKNG----IPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEG 545

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
            G+ A   F+QM  +G+ PD V F+ +L ACSH G V+QGL  F S+ ++ GIS + EHY
Sbjct: 546 NGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHY 604

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
            C+VDLLGRA  L EA +LI+ MPMEP  ++W +LL  CR+H NVE+   AA R+ EL  
Sbjct: 605 GCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAP 664

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           ++ G + LLSNIYA+AG+W DVAR+R  ++  GV+K PG S VQ       F  GD +HP
Sbjct: 665 QRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHP 724

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           +   I  +L  +  R    G++P  S  L DVD++EK  LL  HSEKLA+A+G++ T   
Sbjct: 725 EMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRS 784

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PIR+ KNLR+C DCHS     S+I N EII+RD+NRFH F++G C+C  YW
Sbjct: 785 MPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/642 (40%), Positives = 390/642 (60%), Gaps = 31/642 (4%)

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           + SWN+I+A +A+SGD+   L  F+ M   + +  +  +    + +C+SL     GKQ  
Sbjct: 51  VYSWNSIIADFARSGDSLQALYAFSSMR-KLSLHPNRSTFPCTIKSCSSLYDLCAGKQI- 108

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
                ++ F      D+   +A++  YS+ G   DA  LF ++ + NV    V+W+++I+
Sbjct: 109 ----HQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNV----VSWTSMIS 160

Query: 324 GYAQRGHGHEALDVFRQMQFCG-----------LEPNVVTLVSLLSGCASVGALLLGKET 372
           GY Q     EA+ +F++                +  + V L  ++S CA V    + +  
Sbjct: 161 GYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H   +K+    +G     L V N L+D YAKC  + V+R +FD +  +  DV +W  +I 
Sbjct: 221 HGLAVKK--GFEGC----LAVGNTLMDAYAKCGEISVSRKVFDGM--EETDVCSWNSLIA 272

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+QNG + +A +LF  M ++ + V+ NA TLS  L+ACA   AL+ G+ IH  V++ + 
Sbjct: 273 VYAQNGLSVEAFSLFSDMVKRGE-VRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMEL 331

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E  +  V   ++DMY + G ++ AR  FD LK++NV SWT ++ GYGMHG G +A   F 
Sbjct: 332 EDNL-VVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFY 390

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M + G+ P+ +TF+ +L ACSH+G++ +G  +F+ M  EF +    EHY+C+VDLLGRA
Sbjct: 391 EMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRA 450

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L EA  LI+ M ++P  I+W +LL  CRIH NVELGE++A +L +L+    G Y LLS
Sbjct: 451 GYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLS 510

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIYA+AGRW DV R+R LMK+ G+ K PG S V+ K     F VGD+ HPQ +KIYE L 
Sbjct: 511 NIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLD 570

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L  +++ +GY+P  +  L+DVD EEKG +L  HSEKLA+A+GI+ + PG+ I+I KNLR
Sbjct: 571 ELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLR 630

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH AI  IS I+N EI++RDS RFHHFK+G C+C  YW
Sbjct: 631 ICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 234/487 (48%), Gaps = 42/487 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV+ WN++I    R      A   F  M +   HP+  TFP  +K+C  L     G  +H
Sbjct: 50  SVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIH 109

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 G+ S++FV +AL+ MY++C  L+ AR+LFDE+ +    ++VSW ++++ Y Q+ 
Sbjct: 110 QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPER---NVVSWTSMISGYVQNE 166

Query: 219 DAEGGLMLFARM----------TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEA 268
            A   + LF                V V  D V L   +SACA +   S   +C      
Sbjct: 167 RAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV-TECVHGLAV 225

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           KK FE      +   N ++  Y++ G    +  +F  M + +V     +W+++IA YAQ 
Sbjct: 226 KKGFEGC----LAVGNTLMDAYAKCGEISVSRKVFDGMEETDV----CSWNSLIAVYAQN 277

Query: 329 GHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
           G   EA  +F  M   G +  N VTL ++L  CA  GAL +GK  H   +K  L      
Sbjct: 278 GLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMEL------ 331

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
            D+L+V  +++DMY KC  V++AR  FD +  KN  V +WTVM+  Y  +G   +A+ +F
Sbjct: 332 EDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKN--VKSWTVMVAGYGMHGHGKEAMKVF 389

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVAN--CLI 504
            +M +    +KPN  T    L AC+    L+ G     +  + + E  + P + +  C++
Sbjct: 390 YEMIRCG--IKPNYITFVSVLAACSHAGLLKEGWH---WFNKMKCEFDVEPGIEHYSCMV 444

Query: 505 DMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           D+  R+G +  A  +   +K + + + W SL+    +H   +    +  ++ K  L P  
Sbjct: 445 DLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFK--LDPSN 502

Query: 564 VTFLVLL 570
             + VLL
Sbjct: 503 CGYYVLL 509



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 171/345 (49%), Gaps = 21/345 (6%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K +V +W+++IA +A+ G   +AL  F  M+   L PN  T    +  C+S+  L  GK+
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQ 107

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H     +   V G +  D+ V +ALIDMY+KC  ++ AR +FD I  +N  V +WT MI
Sbjct: 108 IH-----QQAFVFG-YGSDIFVASALIDMYSKCGYLNDARKLFDEIPERN--VVSWTSMI 159

Query: 432 GSYSQNGGANDALALFPQMFQQDK---------LVKPNAFTLSCALMACARLAALRFGRQ 482
             Y QN  A +A+ LF +    D+          V  ++  L C + ACAR+        
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +H   ++  +E  +  V N L+D Y++ G+I  +R VFD +++ +V SW SL+  Y  +G
Sbjct: 220 VHGLAVKKGFEGCLA-VGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 543 LGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           L  +A   F  M K G +  + VT   +L AC+HSG +  G    D + K   +      
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVK-MELEDNLVV 337

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
              IVD+  +  R++ A +  + +  +     W  ++ G  +H +
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVK-SWTVMVAGYGMHGH 381


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/719 (36%), Positives = 408/719 (56%), Gaps = 70/719 (9%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
            +L+A  A    L  A   FD +  P   D V  N +++A+A++  A   + +F  + G 
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAV-PPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 154

Query: 234 VKVQGDGVSLVNALSA----------------CASLGTWSRG------------KQCGMM 265
             ++ D  S    +SA                C+ L + +               +C   
Sbjct: 155 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 214

Query: 266 E---EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           E   +A+KV + M  KD ++W  MV GY R G    A ++F+++   + K +VV W+A+I
Sbjct: 215 EASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEV---DGKFDVV-WNAMI 270

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +GY Q G   +A ++FR+M    +  +  T  S+LS CA+ G  + GK  H   I+  L 
Sbjct: 271 SGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIR--LQ 328

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------------- 421
            +      L V NAL+ +Y+K   + +A+ +FD +  K+                     
Sbjct: 329 PNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAV 388

Query: 422 --------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
                   ++  +W VM+  Y   G + DAL LF QM  +D  VKP  +T + A+ AC  
Sbjct: 389 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED--VKPCDYTYAGAIAACGE 446

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L AL+ GRQ+HA++++  +E       N L+ MY++ G ++ AR+VF  +   + VSW +
Sbjct: 447 LGALKHGRQLHAHLVQCGFEASNS-AGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNA 505

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++  G HG G +A   FDQM  EG+ PD ++FL +L AC+H+G+VD+G  YF+SM ++F
Sbjct: 506 MISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDF 565

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GIS   +HYA ++DLLGR+ R+ EA +LI+ MP EPTP IW A+L+GCR + ++E G  A
Sbjct: 566 GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYA 625

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A++L  +  + DG+Y LLSN Y+ AGRW D AR+R LM+  GVKK PGCSW++       
Sbjct: 626 ADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHV 685

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F VGD  HP++Q++Y+ L  +  R++ +GYVP T F LHD++  EK  +LF HSEKLA+ 
Sbjct: 686 FLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVG 745

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           +G+L   PG  + + KNLRICGDCH+A+ F+S  +  EI++RD  RFHHFK+G C+C+G
Sbjct: 746 FGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCEG 804



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 161/599 (26%), Positives = 262/599 (43%), Gaps = 116/599 (19%)

Query: 82  APSPALSLL----------------QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQ 125
           APSPA SL+                  + P+       NA++    R  L   A  +F  
Sbjct: 91  APSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHA 150

Query: 126 MMRRG-WHPDEYTFPFVLKACGE---LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           ++  G   PD+Y+F  ++ A G+   L +  C + +H  +  SG  + + V NAL+A+Y 
Sbjct: 151 LLGSGSLRPDDYSFTALISAVGQMHNLAAPHC-TQLHCSVLKSGAAAVLSVSNALIALYM 209

Query: 182 RCDTLSY---ARQLFDEM---------------------------FQP--GICDIVSWNT 209
           +CDT      AR++ DEM                           F+   G  D+V WN 
Sbjct: 210 KCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV-WNA 268

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--------- 260
           +++ Y QSG       LF RM  + KV  D  +  + LSACA+ G +  GK         
Sbjct: 269 MISGYVQSGMCADAFELFRRMVSE-KVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRL 327

Query: 261 ---------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                + G +  AK++F+ M +KDVVSWN +++GY   G  + A
Sbjct: 328 QPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKA 387

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +FK M  +    N ++W  +++GY   G   +AL +F QM+   ++P   T    ++ 
Sbjct: 388 VEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAA 443

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C  +GAL  G++ H + ++       S        NAL+ MYAKC +V+ AR++F  +  
Sbjct: 444 CGELGALKHGRQLHAHLVQCGFEASNS------AGNALLTMYAKCGAVNDARLVF--LVM 495

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
            N D  +W  MI +  Q+G   +AL LF QM  +   + P+  +    L AC     +  
Sbjct: 496 PNLDSVSWNAMISALGQHGHGREALELFDQMVAEG--IDPDRISFLTILTACNHAGLVDE 553

Query: 480 GRQIHAYVLRNQYEMLIPFVANC--LIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMT 536
           G   H +    +   + P   +   LID+  RSG I  AR +   +      S W ++++
Sbjct: 554 G--FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILS 611

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG-----------MVDQGLK 584
           G   +G  +   +A DQ+ +     DG T+++L    S +G           M D+G+K
Sbjct: 612 GCRTNGDMEFGAYAADQLFRMIPQHDG-TYILLSNTYSAAGRWVDAARVRKLMRDRGVK 669



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 206/459 (44%), Gaps = 76/459 (16%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  YV     + A S+ + +    F V W NA+I   V+  +  +AF LF +M+     
Sbjct: 238 MVVGYVRRGDVNAARSVFEEVD-GKFDVVW-NAMISGYVQSGMCADAFELFRRMVSEKVP 295

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVIC--SSGF--DSNVFVCNALMAMYARCDTLSY 188
            DE+TF  VL AC        G SVH  I      F  ++ + V NAL+ +Y++   +  
Sbjct: 296 LDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVI 355

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD------VKVQG---- 238
           A+++FD M    + D+VSWNTI++ Y  SG  +  + +F  M         V V G    
Sbjct: 356 AKRIFDTM---NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHG 412

Query: 239 ----DGVSLVN----------------ALSACASLGTWSRGK-------QCGMMEEAKKV 271
               D + L N                A++AC  LG    G+       QCG   EA   
Sbjct: 413 GLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF--EASN- 469

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                     + NA++T Y++ G+  DA  +F  M      L+ V+W+A+I+   Q GHG
Sbjct: 470 ---------SAGNALLTMYAKCGAVNDARLVFLVMPN----LDSVSWNAMISALGQHGHG 516

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY-TIKRVLSVDGSHPDD 390
            EAL++F QM   G++P+ ++ +++L+ C   G  L+ +  H + ++KR   +  S  +D
Sbjct: 517 REALELFDQMVAEGIDPDRISFLTILTACNHAG--LVDEGFHYFESMKRDFGI--SPGED 572

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG----GANDALAL 446
                 LID+  +   +  AR +   + P     + W  ++     NG    GA  A  L
Sbjct: 573 HYA--RLIDLLGRSGRIGEARDLIKTM-PFEPTPSIWEAILSGCRTNGDMEFGAYAADQL 629

Query: 447 FPQMFQQDK--LVKPNAFTLSCALMACARLAALRFGRQI 483
           F  + Q D   ++  N ++ +   +  AR+  L   R +
Sbjct: 630 FRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 668


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/666 (39%), Positives = 389/666 (58%), Gaps = 32/666 (4%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N+ +   ++A Y R D L  A +LFD M    + D+VSWN+++      G+      LF 
Sbjct: 42  NLHLYTKMIAGYTRNDRLCDALKLFDRM---SVRDVVSWNSMIKGCLDCGNLGMATRLFD 98

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M      + + +S    ++     G          +E A+++F  M VKDV +WNAMV 
Sbjct: 99  EMP-----EKNVISWTTMVNGYLKFGR---------VELAQRLFLDMHVKDVAAWNAMVH 144

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
           GY   G  E+   LF++M   +V    ++W+++I G    G   EAL VF++M   G+EP
Sbjct: 145 GYFENGRVEEGVRLFEEMPVRDV----ISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEP 200

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
              T   +LS CA+     LG + H + +K      G    + + + +LI  YA C  ++
Sbjct: 201 TWSTFACVLSACANAVEFNLGVQVHGHVVKL-----GCFFHEFISV-SLITFYANCMKIE 254

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A  +F+    KN  V  WT ++ +Y  N    DAL +F  M +   L  PN  T S  L
Sbjct: 255 HAHKIFNETLTKN--VVKWTALLTAYVWNNKHQDALRVFGDMTKMGAL--PNQSTFSITL 310

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            AC  L AL  G++IH   ++   E  + FV N L+ MY+  G++++A  VF N+ ++++
Sbjct: 311 KACCGLEALDKGKEIHTMAIKLGLETDV-FVGNSLVVMYTECGNVNSAVAVFRNINEKDI 369

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           VSW S++ G   HG G  A   F+QM + G+ P+ +TF  LL ACS SGM+ +G  +F+ 
Sbjct: 370 VSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEY 429

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           +S+      R +HYAC+VD+LGR  +LDEA EL+  MP++   +IW+ALL+ CR+H+N+E
Sbjct: 430 ISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLE 489

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           + E AA  +L+LE     +Y LLSNIYA+AGRW DV+R+R  MK  G+ K+PG SWV  +
Sbjct: 490 VAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLR 549

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F   DR+HP S++IYE L  L +++K  GYVP   FALHDV+DE+K ++L  HSE
Sbjct: 550 GKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSE 609

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           +LA+A+G+++T  G+ I + KNLR+CGDCHS I  +S I+  +I++RDS RFHHFK G C
Sbjct: 610 RLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGIC 669

Query: 829 TCKGYW 834
           +C  YW
Sbjct: 670 SCSDYW 675



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 25/381 (6%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +++A+ +F+++   ++  +  M+ GY+R     DA  LF +M       +VV+W+++I G
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR----DVVSWNSMIKG 83

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
               G+   A  +F +M     E NV++  ++++G    G + L +          L +D
Sbjct: 84  CLDCGNLGMATRLFDEMP----EKNVISWTTMVNGYLKFGRVELAQR---------LFLD 130

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
             H  D+   NA++  Y +   V+    +F+ +    RDV +WT MIG    NG + +AL
Sbjct: 131 -MHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPV--RDVISWTSMIGGLDLNGKSEEAL 187

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            +F +M +    V+P   T +C L ACA       G Q+H +V++        F++  LI
Sbjct: 188 FVFKKMLRSG--VEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGC-FFHEFISVSLI 244

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
             Y+    I+ A  +F+    +NVV WT+L+T Y  +     A   F  M K G  P+  
Sbjct: 245 TFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQS 304

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF + L AC     +D+G K   +M+ + G+         +V +      ++ AV +   
Sbjct: 305 TFSITLKACCGLEALDKG-KEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRN 363

Query: 625 MPMEPTPIIWVALLNGCRIHA 645
           +  E   + W +++ G   H 
Sbjct: 364 IN-EKDIVSWNSIIVGSAQHG 383



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 13/254 (5%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + A  +F +M+R G  P   TF  VL AC        G  VH  +   G   + F+  +L
Sbjct: 184 EEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSL 243

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           +  YA C  + +A ++F+E       ++V W  ++ AY  +   +  L +F  MT  +  
Sbjct: 244 ITFYANCMKIEHAHKIFNETLTK---NVVKWTALLTAYVWNNKHQDALRVFGDMT-KMGA 299

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
             +  +    L AC  L    +GK+   M   K   E     DV   N++V  Y+  G+ 
Sbjct: 300 LPNQSTFSITLKACCGLEALDKGKEIHTM-AIKLGLE----TDVFVGNSLVVMYTECGNV 354

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
             A A+F+ + ++    ++V+W+++I G AQ G G  AL  F QM   G++PN +T   L
Sbjct: 355 NSAVAVFRNINEK----DIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGL 410

Query: 357 LSGCASVGALLLGK 370
           LS C+  G LL G+
Sbjct: 411 LSACSRSGMLLKGR 424



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 24/272 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   V      +A R+F  M + G  P++ TF   LKAC  L +   G  +H
Sbjct: 267 NVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIH 326

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +    G +++VFV N+L+ MY  C  ++ A  +F  + +    DIVSWN+I+   AQ G
Sbjct: 327 TMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEK---DIVSWNSIIVGSAQHG 383

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE----- 273
                L+ F +M     V  + ++    LSAC+         + GM+ + +  FE     
Sbjct: 384 FGLWALIFFNQMIRR-GVDPNEITFTGLLSACS---------RSGMLLKGRCFFEYISRY 433

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           +  V     +  MV    R G  ++A  L + M    VK N + W A+++  A R H + 
Sbjct: 434 KSNVLRPQHYACMVDILGRCGKLDEAEELVRYM---PVKANSMIWLALLS--ACRVHSNL 488

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGC-ASVG 364
            +          LEPN  +   LLS   AS G
Sbjct: 489 EVAERAAKHILDLEPNCSSAYVLLSNIYASAG 520


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 280/718 (38%), Positives = 407/718 (56%), Gaps = 29/718 (4%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+R    P+ YTFPF LKAC  L    CG ++H     +G  +++FV  AL+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV-KVQGDGVSLV 244
           L  A  +F  M  P   D+V+WN ++A YA  G     +     M   + +++ +  +LV
Sbjct: 61  LPDAAHIFATM--PAR-DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 117

Query: 245 NALSACASLGTWSRGKQ----CGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGSFEDA 299
             L   A  G  ++G      C           + K+ D V+   A++  Y++ GS   A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM---QFCGLEPNVVTLVSL 356
             +F  M   N     VTWSA+I G+       +A  +F+ M     C L P   ++ S 
Sbjct: 178 RRVFDAMPARNE----VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASA 231

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           L  CAS+  L +G++ H      +L+  G H D L   N+L+ MYAK   +D A  +FD 
Sbjct: 232 LRACASLDHLRMGEQLHA-----LLAKSGVHAD-LTAGNSLLSMYAKAGLIDQAIALFDE 285

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +A K  D  +++ ++  Y QNG A +A  +F +M  Q   V+P+A T+   + AC+ LAA
Sbjct: 286 MAVK--DTVSYSALVSGYVQNGRAEEAFLVFKKM--QACNVEPDAATMVSLIPACSHLAA 341

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L+ GR  H  V+          + N LIDMY++ G ID +R VF+ +  R++VSW +++ 
Sbjct: 342 LQHGRCSHGSVIIRGLASETS-ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 400

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
           GYG+HGLG +A   F +M   G  PDGVTF+ LL ACSHSG+V +G  +F  M   +G++
Sbjct: 401 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 460

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
            R EHY C+VDLL R   LDEA E I+ MP+     +WVALL  CR++ N++LG+  +  
Sbjct: 461 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 520

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           + EL  E  G++ LLSNIY+ AGR+ + A +R + K  G KK PGCSW++       F  
Sbjct: 521 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 580

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
           GD++HPQS +IY  L  ++  IK +GY P TSF L D+++EEK   L  HSEKLA+AYGI
Sbjct: 581 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 640

Query: 777 LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           L+ +    I +TKNLR+CGDCH+ I  IS++    II+RD+NRFHHFK G C+C  +W
Sbjct: 641 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 20/285 (7%)

Query: 44  LRQCKSLTQVYLIHQ--QIIVQNLTH---VPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           LR C SL  + +  Q   ++ ++  H      + L++ Y        A++L   ++    
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-- 289

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
               ++AL+   V+    + AF +F +M      PD  T   ++ AC  L + + G   H
Sbjct: 290 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 349

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   G  S   +CNAL+ MYA+C  +  +RQ+F+ M      DIVSWNT++A Y   G
Sbjct: 350 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR---DIVSWNTMIAGYGIHG 406

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-CGMMEEAKKVFERMKV 277
             +    LF  M  ++    DGV+ +  LSAC+  G    GK    +M     +  RM+ 
Sbjct: 407 LGKEATALFLEMN-NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME- 464

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                +  MV   SR G  ++A+   + M    ++ +V  W A++
Sbjct: 465 ----HYICMVDLLSRGGFLDEAYEFIQSM---PLRADVRVWVALL 502


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 280/728 (38%), Positives = 403/728 (55%), Gaps = 94/728 (12%)

Query: 169 NVFVC-------NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
           N F C       N+L+  Y+R   +  AR +FDEM      +I+SWN+IVA Y Q+   +
Sbjct: 90  NRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDK---NIISWNSIVAGYFQNKRPQ 146

Query: 222 GGLMLFARMTGDVKVQGDGV--SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               +F +M+    +  +G+    +N                 GM+ EA++VF+RM  ++
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINN----------------GMINEAREVFDRMPERN 190

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VVSW AMV GY + G   +A  LF +M ++NV    V+W+ ++ G  Q G   EA  +F 
Sbjct: 191 VVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLFD 246

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGAL--------------------------------- 366
            M     E +VVT  +++ G   VG L                                 
Sbjct: 247 MMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDI 302

Query: 367 ------------------LLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMYAKCKSV 407
                             +L   T+C  +     +  + P   ++  NA+I  + +   V
Sbjct: 303 ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEV 362

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
             AR +FD +  + +D  TW+ MI  Y + G   DAL LF  M  Q + ++PN  +L   
Sbjct: 363 PKARQVFDQM--REKDEGTWSAMIKVYERKGLELDALELFRMM--QREGIRPNFPSLISV 418

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L  CA LA L  GR+IHA ++R+Q+++ + +VA+ L+ MY + G++  A+ VFD    ++
Sbjct: 419 LSVCAGLANLDHGREIHAQLVRSQFDLDV-YVASVLLSMYIKCGNLAKAKQVFDRFAVKD 477

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VV W S++TGY  HGLG +A   F  M   G+ PD VTF+ +L ACS++G V +GL+ F+
Sbjct: 478 VVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFN 537

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           SM  ++ +  + EHYAC+VDLLGRA +L+EA++LIE MPME   IIW ALL  CR H  +
Sbjct: 538 SMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKL 597

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           +L E+AA +LL LE +  G + LLSNIYA+ GRW DVA +R  M+   V K PGCSW+  
Sbjct: 598 DLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVV 657

Query: 708 KEGTATFFVGDRT-HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
           ++    F  GD + HP+  +I  IL  L   ++  GY P  SF LHDVD+EEK   L  H
Sbjct: 658 EKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYH 717

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEKLA+AYG+L    G PIR+ KNLR+CGDCH+AI  I+ +   EIILRD+NRFHHFK+G
Sbjct: 718 SEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDG 777

Query: 827 SCTCKGYW 834
           SC+C+ YW
Sbjct: 778 SCSCRDYW 785



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 116/256 (45%), Gaps = 13/256 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I+   R  L  +A  LF  M R G  P+  +   VL  C  L +   G  +HA + 
Sbjct: 380 WSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLV 439

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S FD +V+V + L++MY +C  L+ A+Q+FD      + D+V WN+I+  YAQ G    
Sbjct: 440 RSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF---AVKDVVMWNSIITGYAQHGLGVE 496

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M     +  D V+ V  LSAC+  G   +G +     E K   E    + +  
Sbjct: 497 ALRVFHDMHFS-GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE----QKIEH 551

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +  MV    R G   +A  L +KM  E    + + W A++   A R H    L      +
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPME---ADAIIWGALLG--ACRTHMKLDLAEVAAKK 606

Query: 343 FCGLEPNVVTLVSLLS 358
              LEP       LLS
Sbjct: 607 LLVLEPKNAGPFILLS 622


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/741 (34%), Positives = 417/741 (56%), Gaps = 35/741 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  LI    R  + D    LF++M   G  P+ +TF   L    E      G  VH
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 217

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V+  +G D  + V N+L+ +Y +C  +  AR LFD   +  +  +V+WN++++ YA +G
Sbjct: 218 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFD---KTEVKSVVTWNSMISGYAANG 274

Query: 219 -DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERM 275
            D E   M ++     V++     S  + +  CA+L      +Q  C +++      + +
Sbjct: 275 LDLEALGMFYSMRLNYVRLSES--SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           +        A++  YS+  +  DA  LFK++       NVV+W+A+I+G+ Q     EA+
Sbjct: 333 RT-------ALMVAYSKCTAMLDALRLFKEI---GCVGNVVSWTAMISGFLQNDGKEEAV 382

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           D+F +M+  G+ PN  T   +L+    +       E H   +K       ++     V  
Sbjct: 383 DLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKT------NYERSSTVGT 432

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           AL+D Y K   V+ A  +F  I   ++D+  W+ M+  Y+Q G    A+ +F ++ +   
Sbjct: 433 ALLDAYVKLGKVEEAAKVFSGI--DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGG- 489

Query: 456 LVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
            +KPN FT S  L  CA   A++  G+Q H + ++++ +  +  V++ L+ MY++ G+I+
Sbjct: 490 -IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLC-VSSALLTMYAKKGNIE 547

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           +A  VF   +++++VSW S+++GY  HG   KA   F +M+K  +  DGVTF+ +  AC+
Sbjct: 548 SAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACT 607

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H+G+V++G KYFD M ++  I+   EH +C+VDL  RA +L++A+++IE MP      IW
Sbjct: 608 HAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIW 667

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             +L  CR+H   ELG LAA +++ ++ E   +Y LLSN+YA +G W++ A++R LM   
Sbjct: 668 RTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNER 727

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
            VKK PG SW++ K  T +F  GDR+HP   +IY  L  L  R+K +GY P TS+ L D+
Sbjct: 728 NVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDI 787

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           DDE K  +L +HSE+LA+A+G++ T  G+P+ I KNLR+CGDCH  I  I+ I   EI++
Sbjct: 788 DDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVV 847

Query: 815 RDSNRFHHF-KEGSCTCKGYW 834
           RDSNRFHHF  +G C+C  +W
Sbjct: 848 RDSNRFHHFSSDGVCSCGDFW 868



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 184/366 (50%), Gaps = 28/366 (7%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV    ++V  Y +  +F+D   +F +M++ NV    VTW+ +I+GYA+     E L +F
Sbjct: 127 DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV----VTWTTLISGYARNSMNDEVLTLF 182

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +MQ  G +PN  T  + L   A  G    G + H   +K  L  D + P    V N+LI
Sbjct: 183 MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL--DKTIP----VSNSLI 236

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           ++Y KC +V  AR++FD    K+  V TW  MI  Y+ NG   +AL +F  M  +   V+
Sbjct: 237 NLYLKCGNVRKARILFDKTEVKS--VVTWNSMISGYAANGLDLEALGMFYSM--RLNYVR 292

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR-SGDIDTAR 517
            +  + +  +  CA L  LRF  Q+H  V++  + +    +   L+  YS+ +  +D  R
Sbjct: 293 LSESSFASVIKLCANLKELRFTEQLHCSVVKYGF-LFDQNIRTALMVAYSKCTAMLDALR 351

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA---CS 574
           +  +     NVVSWT++++G+  +   ++A   F +M+++G+ P+  T+ V+L A    S
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            S +  Q +K     S   G +        ++D   +  +++EA ++  G+  +   + W
Sbjct: 412 PSEVHAQVVKTNYERSSTVGTA--------LLDAYVKLGKVEEAAKVFSGID-DKDIVAW 462

Query: 635 VALLNG 640
            A+L G
Sbjct: 463 SAMLAG 468



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 140/259 (54%), Gaps = 11/259 (4%)

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++ +++ G+++ G   EA  +F  +   G+E +     S+L   A++   L G++ HC  
Sbjct: 60  SYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQC 119

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           IK          DD+ V  +L+D Y K  +    R +FD +  K R+V TWT +I  Y++
Sbjct: 120 IKF------GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEM--KERNVVTWTTLISGYAR 171

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           N   ++ L LF +M  Q++  +PN+FT + AL   A       G Q+H  V++N  +  I
Sbjct: 172 NSMNDEVLTLFMRM--QNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 229

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           P V+N LI++Y + G++  AR++FD  + ++VV+W S+++GY  +GL  +A   F  MR 
Sbjct: 230 P-VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 288

Query: 557 EGLAPDGVTFLVLLYACSH 575
             +     +F  ++  C++
Sbjct: 289 NYVRLSESSFASVIKLCAN 307



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           RD  ++  ++  +S++G   +A  LF  + +    +  + F  S  L   A L    FGR
Sbjct: 56  RDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIF--SSVLKVSATLCDELFGR 113

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           Q+H   ++  +   +  V   L+D Y +  +    R VFD +K+RNVV+WT+L++GY  +
Sbjct: 114 QLHCQCIKFGFLDDVS-VGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            + D+    F +M+ EG  P+  TF   L   +  G+  +GL+
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/772 (35%), Positives = 417/772 (54%), Gaps = 109/772 (14%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP----------GIC--- 202
           +VH  I + GF     + N L+ +Y +   L+YARQLFDE+ +P          G C   
Sbjct: 35  AVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASG 94

Query: 203 -----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
                            D V +N ++  ++ + D    + LF +M  +   + D  +  +
Sbjct: 95  DITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHE-GFKPDNFTFAS 153

Query: 246 ALSACASLGTWSRGKQC---------------------------------GMMEEAKKVF 272
            L+  A +      KQC                                  ++  A+KVF
Sbjct: 154 VLAGLALVA--DDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVF 211

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           + +  KD  SW  M+TGY + G F+    L + M  +N+KL  V ++A+I+GY  RG   
Sbjct: 212 DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM-DDNMKL--VAYNAMISGYVNRGFYQ 268

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EAL++ R+M   G+E +  T  S++  CA+ G L LGK+ H Y ++R    D S   D  
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE---DFSFHFD-- 323

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKN-----------------------------RD 423
             N+L+ +Y KC   D AR +F+ +  K+                             ++
Sbjct: 324 --NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           + +W +MI   ++NG   + L LF  M ++    +P  +  S A+ +CA L A   G+Q 
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREG--FEPCDYAFSGAIKSCAVLGAYCNGQQY 439

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           HA +L+  ++  +    N LI MY++ G ++ AR VF  +   + VSW +L+   G HG 
Sbjct: 440 HAQLLKIGFDSSLS-AGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGH 498

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G +A   +++M K+G+ PD +T L +L ACSH+G+VDQG KYFDSM   + I   A+HYA
Sbjct: 499 GAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA 558

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
            ++DLL R+ +  +A  +IE +P +PT  IW ALL+GCR+H N+ELG +AA++L  L  E
Sbjct: 559 RLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPE 618

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
            DG+Y LLSN++A  G+W++VAR+R LM+  GVKK   CSW++ +    TF V D +HP+
Sbjct: 619 HDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPE 678

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLALAYGILTTAPG 782
           ++ +Y  L  L + ++ +GYVP TSF LHDV+ D  K D+L  HSEK+A+A+G++   PG
Sbjct: 679 AEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPG 738

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           T IRI KNLR CGDCH+   F+S ++  +IILRD  RFHHF+ G C+C  +W
Sbjct: 739 TTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  176 bits (446), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 151/564 (26%), Positives = 251/564 (44%), Gaps = 91/564 (16%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +++ Y +    + A  + ++          +NA+I          +A  LF +M   G+ 
Sbjct: 86  MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 133 PDEYTFPFVLKACGELP--SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT----L 186
           PD +TF  VL     +     +C    HA    SG      V NAL+++Y++C +    L
Sbjct: 146 PDNFTFASVLAGLALVADDEKQC-VQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK----------- 235
             AR++FDE+ +    D  SW T++  Y ++G  + G  L   M  ++K           
Sbjct: 205 HSARKVFDEILEK---DERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGY 261

Query: 236 --------------------VQGDGVSLVNALSACASLGTWSRGKQ-------------- 261
                               ++ D  +  + + ACA+ G    GKQ              
Sbjct: 262 VNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFH 321

Query: 262 -----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                      CG  +EA+ +FE+M  KD+VSWNA+++GY   G   +A  +FK+M+++ 
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK- 380

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              N+++W  +I+G A+ G G E L +F  M+  G EP        +  CA +GA   G+
Sbjct: 381 ---NILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           + H   +K  +  D S    L   NALI MYAKC  V+ AR +F  +     D  +W  +
Sbjct: 438 QYHAQLLK--IGFDSS----LSAGNALITMYAKCGVVEEARQVFRTMPC--LDSVSWNAL 489

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I +  Q+G   +A+ ++ +M +  K ++P+  TL   L AC+    +  GR+   Y    
Sbjct: 490 IAALGQHGHGAEAVDVYEEMLK--KGIRPDRITLLTVLTACSHAGLVDQGRK---YFDSM 544

Query: 491 QYEMLIPFVANC---LIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDK 546
           +    IP  A+    LID+  RSG    A  V ++L  +     W +L++G  +HG  + 
Sbjct: 545 ETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMEL 604

Query: 547 AHWAFDQMRKEGLAP--DGVTFLV 568
              A D++   GL P  DG   L+
Sbjct: 605 GIIAADKLF--GLIPEHDGTYMLL 626



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 145/321 (45%), Gaps = 27/321 (8%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           L  +C    +   I +++  ++L  V  + L++ YVS      A  + + +     ++  
Sbjct: 329 LYYKCGKFDEARAIFEKMPAKDL--VSWNALLSGYVSSGHIGEAKLIFKEMKEK--NILS 384

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I         +   +LF  M R G+ P +Y F   +K+C  L +   G   HA + 
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFDS++   NAL+ MYA+C  +  ARQ+F  M  P + D VSWN ++AA  Q G    
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM--PCL-DSVSWNALIAALGQHGHGAE 501

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + ++  M     ++ D ++L+  L+AC+           G++++ +K F+ M+    + 
Sbjct: 502 AVDVYEEMLKK-GIRPDRITLLTVLTACS---------HAGLVDQGRKYFDSMETVYRIP 551

Query: 283 WNA-----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             A     ++    R G F DA ++ + +     K     W A+++G   R HG+  L +
Sbjct: 552 PGADHYARLIDLLCRSGKFSDAESVIESL---PFKPTAEIWEALLSGC--RVHGNMELGI 606

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +  GL P       LLS
Sbjct: 607 IAADKLFGLIPEHDGTYMLLS 627


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 276/786 (35%), Positives = 402/786 (51%), Gaps = 113/786 (14%)

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC----- 202
           L S     +VH  + +SGF     + N L+ +Y +     YAR+LFDE+ QP +      
Sbjct: 26  LSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTL 85

Query: 203 -------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                                    D V +N ++  Y+   D    + LF  M      Q
Sbjct: 86  ITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRW-ANFQ 144

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMME------------------------------- 266
            D  +  + LSA   +  +   +QCG M                                
Sbjct: 145 PDDFTFASVLSASTLI--FYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLV 202

Query: 267 -------EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
                   A+K+F+ M  ++   W  ++TGY R G    A  +   M ++      + W+
Sbjct: 203 SSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPG----IAWN 258

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           A+I+GY   G   +AL +FR+M+  G++ +  T  S++S CA  G  LLGK+ H Y +K 
Sbjct: 259 AMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKN 318

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------------ 421
            L+ D      L V N LI +Y K   VD AR +F  +  K+                  
Sbjct: 319 ELNPDRDFL--LSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRME 376

Query: 422 -----------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL--VKPNAFTLSCAL 468
                      +++ TWTVMI   +QNG    AL LF QM    KL   +PN +  + A+
Sbjct: 377 EAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM----KLDGYEPNDYAFAGAI 432

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            AC+ L AL  GRQ+HA ++   ++  +  V N +I MY+R G ++ AR +F  +   + 
Sbjct: 433 TACSVLGALENGRQLHAQIVHLGHDSTLS-VGNAMITMYARCGIVEAARTMFLTMPFVDP 491

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           VSW S++   G HG G KA   ++QM KEG+ PD  TFL +L ACSH+G+V++G +YF+S
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNS 551

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M + +GI+   +HYA ++DL  RA +  +A  +I+ MP E    IW ALL GCR H N++
Sbjct: 552 MLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMD 611

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           LG  AA +L +L  + DG+Y LLSN+YA+ GRW DVAR R LM+  GVKK P CSW + +
Sbjct: 612 LGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVE 671

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F V D  HP+   IY  L  L   +K +GY+P T + LHD++ E K   L  HSE
Sbjct: 672 NKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSE 731

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLA+A+G++    G  +R+ KNLRICGDCH+AI F+S ++  EI++RD  RFHHFK G C
Sbjct: 732 KLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGEC 791

Query: 829 TCKGYW 834
           +C+ YW
Sbjct: 792 SCRNYW 797



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 153/570 (26%), Positives = 245/570 (42%), Gaps = 94/570 (16%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI AY +      A  +            ++NA+I     +    +A  LF  M    + 
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 133 PDEYTFPFVLKACGEL--PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC------- 183
           PD++TF  VL A   +     +CG  +H  +   G +    V NAL+++Y +C       
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCG-QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVS 203

Query: 184 --DTLSYARQLFDEM--------------------------------FQPGICDIVSWNT 209
               ++ AR+LFDEM                                 QPGI    +WN 
Sbjct: 204 SSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGI----AWNA 259

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------- 262
           +++ Y   G  E  L LF +M   + VQ D  +  + +SACA  G +  GKQ        
Sbjct: 260 MISGYLHHGLFEDALTLFRKMRL-LGVQVDESTYTSVISACADGGFFLLGKQVHAYILKN 318

Query: 263 -----------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                  G ++ A+K+F  M VKD+++WN +++GY   G  E+A
Sbjct: 319 ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEA 378

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
            + F +M ++    N++TW+ +I+G AQ G G +AL +F QM+  G EPN       ++ 
Sbjct: 379 KSFFAQMPEK----NLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C+ +GAL  G++ H   +         H   L V NA+I MYA+C  V+ AR MF  +  
Sbjct: 435 CSVLGALENGRQLHAQIVHL------GHDSTLSVGNAMITMYARCGIVEAARTMF--LTM 486

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
              D  +W  MI +  Q+G    A+ L+ QM ++  L  P+  T    L AC+    +  
Sbjct: 487 PFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGIL--PDRRTFLTVLSACSHAGLVEE 544

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
           G +    +L N            +ID++ R+G    A+ V D++  +     W +L+ G 
Sbjct: 545 GNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGC 604

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
             HG  D    A +++ K     DG   L+
Sbjct: 605 RTHGNMDLGIEAAEKLFKLIPQHDGTYVLL 634



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 131/298 (43%), Gaps = 26/298 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ YV+      A S   ++     ++  W  +I    +    + A +LF QM   G+ 
Sbjct: 365 LLSGYVNAGRMEEAKSFFAQMPEK--NLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYE 422

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P++Y F   + AC  L +   G  +HA I   G DS + V NA++ MYARC  +  AR +
Sbjct: 423 PNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTM 482

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M      D VSWN+++AA  Q G     + L+ +M  +  +  D  + +  LSAC+ 
Sbjct: 483 FLTM---PFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKE-GILPDRRTFLTVLSACS- 537

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMR 307
                     G++EE  + F  M     ++     +  M+  + R G F DA  +   M 
Sbjct: 538 --------HAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMP 589

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC-ASVG 364
            E        W A++AG   R HG+  L +    +   L P       LLS   AS+G
Sbjct: 590 FE---ARAPIWEALLAGC--RTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLG 642



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
           D  V  N +     L     L++    R +H +V+ + ++ L   + N LID+Y +S D 
Sbjct: 6   DVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFK-LRGHIVNRLIDIYWKSSDF 64

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             AR +FD + Q +V++ T+L+T Y   G    A   F++   +    D V +  ++   
Sbjct: 65  VYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLD--MRDTVFYNAMITGY 122

Query: 574 SHSGMVDQGLKYFDSM 589
           SH       ++ F +M
Sbjct: 123 SHMNDGHSAIELFRAM 138


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/762 (35%), Positives = 423/762 (55%), Gaps = 43/762 (5%)

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           +  +V       AL + ++++ S    F WN +IR      L   A   + +M   G   
Sbjct: 65  LCGFVESGLMGNALDMFEKMNHS--DTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRS 122

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D +TFPFV+KACGEL +   G  VH  +   GFD +V+VCN L+ MY +   +  A ++F
Sbjct: 123 DNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVF 182

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           DEM    + D+VSWN++V+ Y   GD    LM F  M   +  + D   +++AL AC+  
Sbjct: 183 DEM---PVRDLVSWNSMVSGYQIDGDGLSSLMCFKEML-RLGNKADRFGMISALGACSIE 238

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                G     ME   +V       D++   +++  Y + G  + A  +F ++  +N+  
Sbjct: 239 HCLRSG-----MEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNI-- 291

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V W+A+I G  +                  + P+V+T+++LL  C+  GALL GK  H
Sbjct: 292 --VAWNAMIGGMQEDDK---------------VIPDVITMINLLPSCSQSGALLEGKSIH 334

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            + I+++          L++  AL+DMY KC  + +A  +F+ +  KN  + +W  M+ +
Sbjct: 335 GFAIRKMF------LPYLVLETALVDMYGKCGELKLAEHVFNQMNEKN--MVSWNTMVAA 386

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y QN    +AL +F  +  +   +KP+A T++  L A A LA+   G+QIH+Y+++    
Sbjct: 387 YVQNEQYKEALKMFQHILNEP--LKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLG 444

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
               F++N ++ MY++ GD+ TAR  FD +  ++VVSW +++  Y +HG G  +   F +
Sbjct: 445 S-NTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSE 503

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           MR +G  P+G TF+ LL ACS SG++D+G  +F+SM  E+GI    EHY C++DLLGR  
Sbjct: 504 MRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNG 563

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            LDEA   IE MP+ PT  IW +LL   R H +V L ELAA  +L L+ +  G Y LLSN
Sbjct: 564 NLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSN 623

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA AGRW+DV RI+ LMK  G+ K  GCS V     + +F   DR+H  +  IY++L  
Sbjct: 624 MYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDI 683

Query: 734 LVQRIKAMGYVPQ-TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
           L+++I    Y+   T F   DV  +++G+    HS KLA+ +G+++TA G P+ + KN R
Sbjct: 684 LLKKIGEDIYLHSLTKFRPLDV-AKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTR 742

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IC DCH A   IS +   EI++ D+  FHHF++G C+C+ YW
Sbjct: 743 ICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/678 (37%), Positives = 396/678 (58%), Gaps = 45/678 (6%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           D   YA  +F  + +P   + + WNT++  YA S D    L L+  M   + +  +  + 
Sbjct: 14  DGFPYAISVFATIQEP---NQLIWNTMLRGYALSSDPVSALKLYVVMIS-LGLLPNSYTF 69

Query: 244 VNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERMKV 277
              L +CA    +  G+Q                           G +E+A KVF+R   
Sbjct: 70  PFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSH 129

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +DVVS+ A++TGY+  G+   A  +F ++  ++V    V+W+A+I+GYA+ G   EAL++
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDV----VSWNAMISGYAETGSYKEALEL 185

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M    + P+  T+V++LS CA   ++ LG++ H +        D     +L ++NAL
Sbjct: 186 FKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWID------DHGFGSNLKIVNAL 239

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID+Y+KC  V+ A  +F+ ++ K  DV +W  +IG Y+      +AL LF +M +  +  
Sbjct: 240 IDLYSKCGQVETACGLFEGLSCK--DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 295

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML-IPFVANCLIDMYSRSGDIDTA 516
            PN  T+   L ACA L A+  GR IH Y+ +   ++   P +   LIDMY++ GDI+ A
Sbjct: 296 SPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAA 355

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF+++  +++ SW +++ G+ MHG  +     F +MRK G+ PD +TF+ LL ACSHS
Sbjct: 356 HQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G +D G   F SM++++ I+ + EHY C++DLLG +    EA E+I+ MPMEP  +IW +
Sbjct: 416 GKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCS 475

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CR H N+EL E  A  L+++E E  GSY LLSNIYA AG W +VA++R+L+   G+
Sbjct: 476 LLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGM 535

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PGCS ++       F VGD+ HP++++IY +L  +   ++  G+VP TS  L ++++
Sbjct: 536 KKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEE 595

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K   L  HSEKLA+A+G+++T PGT + I KNLR+C +CH A   +S I   EII RD
Sbjct: 596 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARD 655

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHF++G C+C  +W
Sbjct: 656 RTRFHHFRDGVCSCNDFW 673



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/530 (26%), Positives = 244/530 (46%), Gaps = 104/530 (19%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++R       P +A +L++ M+  G  P+ YTFPF+LK+C +  +   G  +H  + 
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFD---------------------------E 195
             G++ +++V  +L++MYA+   L  A ++FD                           E
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 196 MF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           MF +  + D+VSWN +++ YA++G  +  L LF  M     V+ D  ++V  LSACA   
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMM-KTNVRPDEGTMVTVLSACAQSR 212

Query: 255 TWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
           +   G+Q                          CG +E A  +FE +  KDVVSWN ++ 
Sbjct: 213 SVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIG 272

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
           GY+ +  +++A  LF++M +                                    G  P
Sbjct: 273 GYTHMNLYKEALLLFQEMLRS-----------------------------------GESP 297

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           N VT+VS+L  CA +GA+ +G+  H Y  K++  V  +      +  +LIDMYAKC  ++
Sbjct: 298 NDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPS----LRTSLIDMYAKCGDIE 353

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A  +F+++  K+  +++W  MI  ++ +G AN    LF +M +    ++P+  T    L
Sbjct: 354 AAHQVFNSMLHKS--LSSWNAMIFGFAMHGRANAGFDLFSRMRKNG--IEPDDITFVGLL 409

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-Q 525
            AC+    L  GR I   + ++ Y+ + P + +  C+ID+   SG    A+ +   +  +
Sbjct: 410 SACSHSGKLDLGRHIFKSMTQD-YD-ITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPME 467

Query: 526 RNVVSWTSLMTGYGMHGLGDKAH-WAFDQMRKEGLAPDGVTFLVLLYACS 574
            + V W SL+     HG  + A  +A + M+ E   P     L  +YA +
Sbjct: 468 PDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATA 517



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 43/292 (14%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN LI     + L   A  LF +M+R G  P++ T   +L AC  L +   G  +H 
Sbjct: 264 VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHV 323

Query: 160 VICSSGFDSNVFVCNA------LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            I     D    V NA      L+ MYA+C  +  A Q+F+ M    +    SWN ++  
Sbjct: 324 YIDKKLKD----VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS---SWNAMIFG 376

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           +A  G A  G  LF+RM  +  ++ D ++ V  LSAC+           G ++  + +F+
Sbjct: 377 FAMHGRANAGFDLFSRMRKN-GIEPDDITFVGLLSACS---------HSGKLDLGRHIFK 426

Query: 274 RMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
            M         +  +  M+      G F++A  + K M  E    + V W +++   A R
Sbjct: 427 SMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEP---DGVIWCSLLK--ACR 481

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSG----------CASVGALLLGK 370
            HG+  L          +EP       LLS            A V ALL GK
Sbjct: 482 RHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGK 533


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 401/710 (56%), Gaps = 52/710 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALM--AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +HA +  +G   + F  + L+  A  +   +L YA+Q+FD++  P   ++ +WNT++ AY
Sbjct: 54  IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP---NLYTWNTLIRAY 110

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           A S +    L++F RM        D  +    + A + L     GK    M     V + 
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGM-----VIKV 165

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           +   DV   N+++  Y++ G     + +F  + + +V    V+W+++I  + Q G   EA
Sbjct: 166 LLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV----VSWNSMITAFVQGGCPEEA 221

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L++F++M+   ++PN +T+V +LS CA       G+  H Y  +  +       + L + 
Sbjct: 222 LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG------ESLTLS 275

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPK-----------------------------NRDVA 425
           NA++DMY KC SV+ A+ +FD +  K                             N+D+A
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIA 335

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  +I +Y Q G   +AL LF ++ Q  K  KP+  TL   L ACA+L A+  G  IH 
Sbjct: 336 AWNALISAYEQCGKPKEALELFHEL-QLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHV 394

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y+ + Q   L   +   LIDMY + GD+  A +VF ++++++V  W++++ G  MHG G 
Sbjct: 395 YI-KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGK 453

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
            A   F +M+++ + P+ VTF  +L ACSH G+V++G  +F+ M   +G+    +HYAC+
Sbjct: 454 DAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACM 513

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VD+LGRA  L+EAVELIE MPM P   +W ALL  C IH NV L E A ++L+ELE    
Sbjct: 514 VDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNH 573

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y LLSNIYA AG+W  V+ +R LM+  G+KK PGCS ++       F VGD +HP ++
Sbjct: 574 GAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAK 633

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE-KGDLLFEHSEKLALAYGILTTAPGTP 784
           KIY  L  +V R++ +GYVP  S  L  V++E+ K   LF HSEKLA+A+G+++T    P
Sbjct: 634 KIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQP 693

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRI KNLR+CGDCHS    +S + + EI+LRD  RFHHF+EG C+C  YW
Sbjct: 694 IRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 281/538 (52%), Gaps = 65/538 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRI---SPSP 97
           L+ QC    Q+  IH Q++   L   P   S LI A  +  +P P+L   Q++    P P
Sbjct: 41  LIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITA--AALSPFPSLDYAQQVFDQIPHP 98

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSS 156
            +++ WN LIR       P  +  +FL+M+ +    PD++TFPF++KA  EL     G +
Sbjct: 99  -NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
            H ++      S+VF+ N+L+  YA+C  L    ++F  + +    D+VSWN+++ A+ Q
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRR---DVVSWNSMITAFVQ 214

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------- 260
            G  E  L LF  M     V+ +G+++V  LSACA    +  G+                
Sbjct: 215 GGCPEEALELFQEMETQ-NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLT 273

Query: 261 ----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                     +CG +E+AK++F++M  KD+VSW  M+ GY++IG ++ A  +F  M  + 
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQ- 332

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLG 369
              ++  W+A+I+ Y Q G   EAL++F ++Q     +P+ VTLVS LS CA +GA+ LG
Sbjct: 333 ---DIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
              H Y  K+ + +      +  +  +LIDMY KC  +  A ++F ++  + +DV  W+ 
Sbjct: 390 GWIHVYIKKQGMKL------NCHLTTSLIDMYCKCGDLQKALMVFHSV--ERKDVFVWSA 441

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI   + +G   DA+ALF +M Q+DK VKPNA T +  L AC+ +  +  GR        
Sbjct: 442 MIAGLAMHGHGKDAIALFSKM-QEDK-VKPNAVTFTNILCACSHVGLVEEGR-----TFF 494

Query: 490 NQYEM---LIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           NQ E+   ++P V +  C++D+  R+G ++ A  + + +      S W +L+    +H
Sbjct: 495 NQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 552


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 297/818 (36%), Positives = 433/818 (52%), Gaps = 52/818 (6%)

Query: 48  KSLTQVYLIHQQIIVQNLTH----VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           +SL  V  IH   + ++L H       + L+ AY      + AL+L   + PS  +V + 
Sbjct: 73  RSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAM-PSRDAVTF- 130

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVIC 162
           N+LI      R    A      M+  G     +T   VL AC  L    R G   HA   
Sbjct: 131 NSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFAL 190

Query: 163 SSGF--DSNVFVCNALMAMYARCDTLSYARQLF---DEMFQPGICDIVSWNTIVAAYAQS 217
            +GF      F  NAL++MYAR   +  A+ LF   D    PG   +V+WNT+V+   QS
Sbjct: 191 KNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPG-GGVVTWNTMVSLLVQS 249

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERM 275
           G     + +   M     V+ DG++  +AL AC+ L   S G++    +++++       
Sbjct: 250 GRCGEAIEVIYDMVAR-GVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSF 308

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
               +V    M   + R+G     F +     ++     +  W+A++ GYAQ G   EAL
Sbjct: 309 VASALVD---MYASHERVGVARRVFDMVPGGHRQ-----LGLWNAMVCGYAQAGMDEEAL 360

Query: 336 DVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           ++F +M+   G+ P+  T+  +L  CA        +  H Y +KR ++      D+  V 
Sbjct: 361 ELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMA------DNPFVQ 414

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NAL+D+YA+   ++ AR +F AI P  RDV +W  +I      G  +DA  L  +M QQ 
Sbjct: 415 NALMDLYARLGDMEAARWIFAAIEP--RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQG 472

Query: 455 KL----------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
           +                 V PN  TL   L  CA LAA   G++IH Y +R+  +  I  
Sbjct: 473 RFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIA- 531

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V + L+DMY++ G +  +R VFD L +RNV++W  L+  YGMHGLGD+A   FD+M    
Sbjct: 532 VGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSN 591

Query: 559 LA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
            A P+ VTF+  L ACSHSGMVD+G++ F SM +  G+    + +AC VD+LGRA RLDE
Sbjct: 592 EAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDE 651

Query: 618 AVELIEGM-PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           A  +I  M P E     W + L  CR+H NV LGE+AA RL +LE ++   Y LL NIY+
Sbjct: 652 AYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYS 711

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
            AG W+  + +R+ M+  GV K PGCSW++       F  G+  HP+S  ++  +  L +
Sbjct: 712 AAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWE 771

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           R++  GY P TS  LHD+++ EK  +L  HSEKLA+A+G+L T PG  IR+ KNLR+C D
Sbjct: 772 RMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCND 831

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CH A  FIS ++  EI+LRD  RFHHF +G+C+C  YW
Sbjct: 832 CHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/558 (42%), Positives = 354/558 (63%), Gaps = 18/558 (3%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V  N ++  Y++ G    A  LF +M   +V    VTW+A+I GY+Q     +AL + 
Sbjct: 49  DLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDV----VTWTALITGYSQHDRPQDALLLL 104

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGA--LLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            +M   GL+PN  TL SLL   + VG+  +L G++ H   ++        +  ++ V  A
Sbjct: 105 PEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRY------GYDSNVYVSCA 158

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           ++DMYA+C  ++ A+++FD +  KN    +W  +I  Y++ G  + A  LF  M +++  
Sbjct: 159 ILDMYARCHHLEEAQLIFDVMVSKNE--VSWNALIAGYARKGQGDKAFCLFSNMLREN-- 214

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           VKP  FT S  L ACA + +L  G+ +HA +++   E L+ FV N L+DMY++SG I+ A
Sbjct: 215 VKPTHFTYSSVLCACASMGSLEQGKWVHALMIK-WGEKLVAFVGNTLLDMYAKSGSIEDA 273

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           + VFD L +R+VVSW S++TGY  HGLG  A   F++M +  +AP+ +TFL +L ACSH+
Sbjct: 274 KKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHA 333

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G++D+G  YFD M K++ +  +  HY  +VDLLGRA  LD A++ I  MP++PT  +W A
Sbjct: 334 GLLDEGRHYFDMM-KKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGA 392

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CR+H N+ELG  AA  + EL+S   G++ LL NIYA AGRW D A++R +MK +GV
Sbjct: 393 LLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGV 452

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK P CSWV+ +     F   D  HPQ ++I+ +   +  +IK +GYVP +S  L  +D 
Sbjct: 453 KKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQ 512

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +E+   L  HSEKLALA+ +L T PG+ IRI KN+RICGDCHSA  F+S ++  EII+RD
Sbjct: 513 QEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRD 572

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHF +G+C+C+ YW
Sbjct: 573 TNRFHHFCDGACSCEDYW 590



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 201/435 (46%), Gaps = 89/435 (20%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +LK C  L     G  +HA++ +S F  ++ + N L+ +YA+C  L YAR+LFDEM    
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR- 79

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS--R 258
             D+V+W  ++  Y+Q    +  L+L   M   + ++ +  +L + L A + +G+    +
Sbjct: 80  --DVVTWTALITGYSQHDRPQDALLLLPEML-RIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 259 GKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           G+Q                          C  +EEA+ +F+ M  K+ VSWNA++ GY+R
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYAR 196

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G  + AF LF  M +ENVK                                   P   T
Sbjct: 197 KGQGDKAFCLFSNMLRENVK-----------------------------------PTHFT 221

Query: 353 LVSLLSGCASVGALLLGKETHCYTIK---RVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             S+L  CAS+G+L  GK  H   IK   ++++  G         N L+DMYAK  S++ 
Sbjct: 222 YSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVG---------NTLLDMYAKSGSIED 272

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A+ +FD +A   RDV +W  M+  YSQ+G    AL  F +M +    + PN  T  C L 
Sbjct: 273 AKKVFDRLA--KRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTR--IAPNDITFLCVLT 328

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRN 527
           AC+    L  GR  H + +  +Y  + P +++   ++D+  R+G +D A      +  + 
Sbjct: 329 ACSHAGLLDEGR--HYFDMMKKYN-VEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKP 385

Query: 528 VVS-WTSLMTGYGMH 541
             + W +L+    MH
Sbjct: 386 TAAVWGALLGACRMH 400



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 167/308 (54%), Gaps = 18/308 (5%)

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           +LL  C  +  L  GK  H       L ++    DDL++ N L+++YAKC  +  AR +F
Sbjct: 20  TLLKRCTHLNKLNEGKIIH------ALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLF 73

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D ++  +RDV TWT +I  YSQ+    DAL L P+M +    +KPN FTL+  L A + +
Sbjct: 74  DEMS--SRDVVTWTALITGYSQHDRPQDALLLLPEMLRIG--LKPNQFTLASLLKAASGV 129

Query: 475 AALRF--GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            +     GRQ+H   LR  Y+  + +V+  ++DMY+R   ++ A+++FD +  +N VSW 
Sbjct: 130 GSTDVLQGRQLHGLCLRYGYDSNV-YVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWN 188

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +L+ GY   G GDKA   F  M +E + P   T+  +L AC+  G ++QG K+  ++  +
Sbjct: 189 ALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHALMIK 247

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
           +G    A     ++D+  ++  +++A ++ + +      + W ++L G   H    LG++
Sbjct: 248 WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDV-VSWNSMLTGYSQHG---LGKV 303

Query: 653 AANRLLEL 660
           A  R  E+
Sbjct: 304 ALQRFEEM 311



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 35/293 (11%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC-- 153
           S   V  W ALI    +   P +A  L  +M+R G  P+++T   +LKA   + S+    
Sbjct: 77  SSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H +    G+DSNV+V  A++ MYARC  L  A+ +FD M      + VSWN ++A 
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSK---NEVSWNALIAG 193

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------- 260
           YA+ G  +    LF+ M  +  V+    +  + L ACAS+G+  +GK             
Sbjct: 194 YARKGQGDKAFCLFSNMLRE-NVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKL 252

Query: 261 -------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                        + G +E+AKKVF+R+  +DVVSWN+M+TGYS+ G  + A   F++M 
Sbjct: 253 VAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEML 312

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
           +  +  N +T+  V+   +  G   E    F  M+   +EP +   VT+V LL
Sbjct: 313 RTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLL 365


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/764 (36%), Positives = 420/764 (54%), Gaps = 27/764 (3%)

Query: 72  HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           HLI  Y    +   A  + + +      VF W  +I    +    D A  +F QM     
Sbjct: 45  HLIQMYAQCGSVPEAQQVFEILERK--DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDV 102

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            P + T+  +L AC    S + G  +H  I   GF+ +VFV  AL+ MY +C ++  A  
Sbjct: 103 MPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWD 162

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
            F  +      D+VSW  ++AA  Q         L+ RM  D  V  + ++L    +A  
Sbjct: 163 SFKRLEHR---DVVSWTAMIAACVQHDQFALARWLYRRMQLD-GVVPNKITLYTVFNAYG 218

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                S GK    +     V  R+   DV   N+ +  +   G   DA  LF+ M    V
Sbjct: 219 DPHYLSEGKFIYSL-----VSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM----V 269

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             +VVTW+ VI  Y Q  +  EA+ +F ++Q  G++ N +T V +L+   S+ +L  GK 
Sbjct: 270 DRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKV 329

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H       L  +  +  D++V  AL+ +Y +C++   A  +F  +  K  DV TWTVM 
Sbjct: 330 IH------ELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSK--DVITWTVMC 381

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            +Y+QNG   +AL LF +M  + +  +P + TL   L  CA LAAL+ GRQIH++++ N 
Sbjct: 382 VAYAQNGFRKEALQLFQEMQLEGR--RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENG 439

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           + M +  V   LI+MY + G +  AR VF+ + +R+++ W S++  Y  HG  D+    F
Sbjct: 440 FRMEM-VVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLF 498

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           +QM+ +G   D V+F+ +L A SHSG V  G +YF +M ++F I+   E Y C+VDLLGR
Sbjct: 499 NQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGR 558

Query: 612 ANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           A R+ EAV+++  +    P  I+W+ LL  CR H   +  + AA ++LE +    G+Y +
Sbjct: 559 AGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVV 618

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSN+YA AG W  V R+R LM+  GVKK PG S ++       F  GDR+HP+   IY  
Sbjct: 619 LSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAE 678

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L   ++A GY+P T   LHDV+DE K D+LF HSE+LA+A+G+++T PGTP+R+ KN
Sbjct: 679 LDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKN 738

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCH+A  +IS +   EI++RD++RFH+FK+G C+CK YW
Sbjct: 739 LRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/546 (26%), Positives = 259/546 (47%), Gaps = 27/546 (4%)

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           + PD   F  +L+ C    +   G  VH  +C  GF+ N  VC  L+ MYA+C ++  A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           Q+F+ + +    D+ +W  ++  Y Q GD +  L +F +M  +  V    V+ V  L+AC
Sbjct: 61  QVFEILERK---DVFAWTRMIGIYCQQGDYDRALGMFYQMQEE-DVMPTKVTYVAILNAC 116

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           AS  +   G     ME   ++ ++    DV    A++  Y++ GS   A+  FK++    
Sbjct: 117 ASTESLKDG-----MEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR- 170

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              +VV+W+A+IA   Q      A  ++R+MQ  G+ PN +TL ++ +       L  GK
Sbjct: 171 ---DVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGK 227

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             +     RV+        D+ V+N+ ++M+     +  AR +F+ +   +RDV TW ++
Sbjct: 228 FIYSLVSSRVME------SDVRVMNSAMNMFGNAGLLGDARRLFEDMV--DRDVVTWNIV 279

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  Y QN    +A+ LF ++ QQD  +K N  T    L     L +L  G+ IH  V   
Sbjct: 280 ITFYVQNENFGEAVRLFGRL-QQDG-IKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA 337

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
            Y+  +  VA  L+ +Y R      A  +F ++  ++V++WT +   Y  +G   +A   
Sbjct: 338 GYDRDV-VVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQL 396

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M+ EG  P   T + +L  C+H   + +G +   S   E G          ++++ G
Sbjct: 397 FQEMQLEGRRPTSATLVAVLDTCAHLAALQKG-RQIHSHIIENGFRMEMVVETALINMYG 455

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           +  ++ EA  + E M      ++W ++L     H   +      N+ ++L+ EK  + + 
Sbjct: 456 KCGKMAEARSVFEKMAKRDI-LVWNSMLGAYAQHGYYDETLQLFNQ-MQLDGEKADAVSF 513

Query: 671 LSNIYA 676
           +S + A
Sbjct: 514 VSVLSA 519


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 414/721 (57%), Gaps = 58/721 (8%)

Query: 152 RCGS-----SVHAVICSSGFDSNVFVCNALMAMYARCD--TLSYARQLFDEMFQPGICDI 204
           RC S       HA +  +G  S+ +  + L A+ A     +L YAR++FDE+ QP   + 
Sbjct: 40  RCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQP---NS 96

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
            +WNT++ AYA   D    +  F  M + + +   +  +    + A A + + S G+   
Sbjct: 97  FTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH 156

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            M     V       DV   N+++  Y   G  + A  +F  +++++V    V+W+++I 
Sbjct: 157 GMAIKSAVG-----SDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV----VSWNSMIN 207

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G+ Q+G   +AL++F++M+   ++ + VT+V +LS CA +  L  G+    Y  +  ++V
Sbjct: 208 GFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNV 267

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------------------- 421
           +      L + NA++DMY KC S++ A+ +FDA+  K+                      
Sbjct: 268 N------LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAARE 321

Query: 422 -------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
                  +D+  W  +I +Y QNG  N+AL +F ++ Q  K +K N  TL   L ACA++
Sbjct: 322 VLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHEL-QLQKNIKLNQITLVSTLSACAQV 380

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            AL  GR IH+Y+ +N  +M   +V + LI MYS+ GD++ AR VF+++++R+V  W+++
Sbjct: 381 GALELGRWIHSYIKKNGIKMNF-YVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAM 439

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + G  MHG G +A   F +M++  + P+GVTF  +  ACSH+G+VD+    F  M   +G
Sbjct: 440 IGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYG 499

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I    +HYACIVD+LGR+  L++AV+ IE MP+ P+  +W ALL  C+IHAN+ L E+A 
Sbjct: 500 IVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMAC 559

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            RLLELE   DG++ LLSNIYA +G+W +V+ +R  M+ TG+KK PGCS ++       F
Sbjct: 560 TRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEF 619

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE-KGDLLFEHSEKLALA 773
             GD  HP S+K+Y  L  +++++K+ GY P+ S  L  +++EE K   L  HSEKLA+ 
Sbjct: 620 LSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAIC 679

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           YG+++T     IR+ KNLR+CGDCH+    IS + N EII+RD  RFHHF+ G C+C  +
Sbjct: 680 YGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDF 739

Query: 834 W 834
           W
Sbjct: 740 W 740



 Score =  229 bits (585), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 257/509 (50%), Gaps = 57/509 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPS----HLIAAYVSHNAPSPALSLLQRISPSPF 98
           L+ +C SL Q+   H  +I   +   P S      IAA  S  +   A  +   I P P 
Sbjct: 37  LIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEI-PQPN 95

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMM--RRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           S F WN LIR       P  +   FL M+      +P++YTFPF++KA  E+ S   G S
Sbjct: 96  S-FTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 154

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H +   S   S+VFV N+L+  Y  C  L  A ++F  + +    D+VSWN+++  + Q
Sbjct: 155 LHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK---DVVSWNSMINGFVQ 211

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------- 260
            G  +  L LF +M  +  V+   V++V  LSACA +     G+                
Sbjct: 212 KGSPDKALELFKKMESE-DVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLT 270

Query: 261 ----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                     +CG +E+AK++F+ M+ KD V+W  M+ GY+    +E A  +   M    
Sbjct: 271 LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP--- 327

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLG 369
            K ++V W+A+I+ Y Q G  +EAL VF ++Q    ++ N +TLVS LS CA VGAL LG
Sbjct: 328 -KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG 386

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           +  H Y  K  + +      +  V +ALI MY+KC  ++ AR +F+++  + RDV  W+ 
Sbjct: 387 RWIHSYIKKNGIKM------NFYVTSALIHMYSKCGDLEKAREVFNSV--EKRDVFVWSA 438

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MIG  + +G  ++A+ +F +M  Q+  VKPN  T +    AC+    +     +  Y + 
Sbjct: 439 MIGGLAMHGCGSEAVDMFYKM--QEANVKPNGVTFTNVFCACSHTGLVDEAESLF-YKME 495

Query: 490 NQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
           + Y  ++P   +  C++D+  RSG ++ A
Sbjct: 496 SSYG-IVPEDKHYACIVDVLGRSGYLEKA 523


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/739 (36%), Positives = 408/739 (55%), Gaps = 75/739 (10%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYAR---QLFDEMFQPGICDIVSWNTIVAAY 214
           HA+I      S+  +  +L++ YA   +LS  +    L   +  P    + S+++++ A+
Sbjct: 23  HALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHP---TLFSFSSLIHAF 79

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------- 261
           A+S      L  F+ +   +++  D   L +A+ +CASL     G+Q             
Sbjct: 80  ARSHHFPHVLTTFSHLH-PLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTD 138

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        C  + +A+K+F+RM  +DVV W+AM+ GYSR+G  E+A  LF +MR 
Sbjct: 139 SIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRS 198

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             V+ N+V+W+ ++AG+   G   EA+ +FR M   G  P+  T+  +L     +  +++
Sbjct: 199 GGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVV 258

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP--------- 419
           G + H Y IK+ L        D  V++A++DMY KC  V     +FD +           
Sbjct: 259 GAQVHGYVIKQGLG------SDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAF 312

Query: 420 ------------------KNRD------VATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                             K +D      V TWT +I S SQNG   +AL LF  M  Q  
Sbjct: 313 LTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM--QAY 370

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            V+PNA T+   + AC  ++AL  G++IH + LR      + +V + LIDMY++ G I  
Sbjct: 371 GVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDV-YVGSALIDMYAKCGRIQL 429

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR  FD +   N+VSW ++M GY MHG   +    F  M + G  PD VTF  +L AC+ 
Sbjct: 430 ARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQ 489

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +G+ ++G + ++SMS+E GI  + EHYAC+V LL R  +L+EA  +I+ MP EP   +W 
Sbjct: 490 NGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWG 549

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL+ CR+H N+ LGE+AA +L  LE    G+Y LLSNIYA+ G W +  RIR +MK  G
Sbjct: 550 ALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKG 609

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           ++K PG SW++          GD++HPQ + I E L  L  ++K  GY+P+T+F L DV+
Sbjct: 610 LRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVE 669

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +++K  +L  HSEKLA+  G+L T+PG P+++ KNLRIC DCH+ I  IS +   EI +R
Sbjct: 670 EQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVR 729

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D+NRFHHFK+G C+C  +W
Sbjct: 730 DTNRFHHFKDGVCSCGDFW 748



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 165/571 (28%), Positives = 272/571 (47%), Gaps = 90/571 (15%)

Query: 44  LRQC-----KSLTQVYLIHQQIIVQNL---THVPPSHL--IAAYVSHNAPSPALSLLQRI 93
           L QC      SL+Q    H  I+  NL   T +  S L   A  +S + P  +L+L   +
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
            P P ++F +++LI    R     +    F  +      PD +  P  +K+C  L +   
Sbjct: 65  -PHP-TLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDP 122

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +HA   +SGF ++  V ++L  MY +CD +  AR+LFD M      D+V W+ ++A 
Sbjct: 123 GQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDR---DVVVWSAMIAG 179

Query: 214 YAQSGDAEGGLMLFARM-TGDVK------------------------------VQG---D 239
           Y++ G  E    LF  M +G V+                              VQG   D
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPD 239

Query: 240 GVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFE 273
           G ++   L A   L     G Q                          CG ++E  +VF+
Sbjct: 240 GSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFD 299

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            ++  ++ S NA +TG SR G  + A  +F K + + ++LNVVTW+++IA  +Q G   E
Sbjct: 300 EVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLE 359

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           AL++FR MQ  G+EPN VT+ SL+  C ++ AL+ GKE HC++++R +       DD+ V
Sbjct: 360 ALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIF------DDVYV 413

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            +ALIDMYAKC  + +AR  FD ++  N  + +W  ++  Y+ +G A + + +F  M Q 
Sbjct: 414 GSALIDMYAKCGRIQLARRCFDKMSALN--LVSWNAVMKGYAMHGKAKETMEMFHMMLQS 471

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSG 511
            +  KP+  T +C L ACA+      G +   Y   ++   + P + +  CL+ + SR G
Sbjct: 472 GQ--KPDLVTFTCVLSACAQNGLTEEGWR--CYNSMSEEHGIEPKMEHYACLVTLLSRVG 527

Query: 512 DIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            ++ A  +   +  + +   W +L++   +H
Sbjct: 528 KLEEAYSIIKEMPFEPDACVWGALLSSCRVH 558



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 15/253 (5%)

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V  W ++I    +      A  LF  M   G  P+  T P ++ ACG + +   G  +
Sbjct: 339 LNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEI 398

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H      G   +V+V +AL+ MYA+C  +  AR+ FD+M      ++VSWN ++  YA  
Sbjct: 399 HCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKM---SALNLVSWNAVMKGYAMH 455

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMK 276
           G A+  + +F  M    + + D V+    LSACA  G    G +C   M E   +  +M+
Sbjct: 456 GKAKETMEMFHMMLQSGQ-KPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKME 514

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
                 +  +VT  SR+G  E+A+++ K+M  E    +   W A+++  + R H + +L 
Sbjct: 515 -----HYACLVTLLSRVGKLEEAYSIIKEMPFEP---DACVWGALLS--SCRVHNNLSLG 564

Query: 337 VFRQMQFCGLEPN 349
                +   LEP 
Sbjct: 565 EIAAEKLFFLEPT 577


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 283/808 (35%), Positives = 434/808 (53%), Gaps = 49/808 (6%)

Query: 33  TTPCIKITSLLLRQCKSLTQVYL---IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPAL 87
           T PC+      ++ C  ++ V +   +H  ++   L       + L++ Y +H   S AL
Sbjct: 189 TFPCV------IKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDAL 242

Query: 88  SLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
            L   I P   ++  WN++IR        D AF            PD  T   VL  C  
Sbjct: 243 KLFD-IMPER-NLVSWNSMIR-VFSDNGDDGAFM-----------PDVATVVTVLPVCAR 288

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
                 G  VH        D  + V NALM MY++   +  ++ +F         ++VSW
Sbjct: 289 EREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNK---NVVSW 345

Query: 208 NTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           NT+V  ++  GD  G   L  +M  G   V+ D V+++NA+  C         K+     
Sbjct: 346 NTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYS 405

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
             ++      V D +  NA V  Y++ GS   A  +F  +R + +     +W+A+I GYA
Sbjct: 406 LKQEF-----VYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLN----SWNALIGGYA 456

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q      +LD   QM+  GL P+  T+ SLLS C+ + +L LGKE H + I+  L     
Sbjct: 457 QSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLE---- 512

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
              DL V  +++ +Y  C  +   +V+FDA+  ++  + +W  +I  + QNG    AL L
Sbjct: 513 --RDLFVYLSVLSLYIHCGELCTVQVLFDAM--EDNSLVSWNTVITGHLQNGFPERALGL 568

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F QM      ++P   ++     AC+ L +LR GR+ HAY L++  E    F+A  +IDM
Sbjct: 569 FRQMVLYG--IQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLED-NAFIACSIIDM 625

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y+++G I  +  VF+ LK+++  SW +++ GYGMHG   +A   F++M++ G  PD +TF
Sbjct: 626 YAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTF 685

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           L +L AC+HSG++ +GL+Y D M   FG+    +HYAC++D+LGRA +LD A+ +   M 
Sbjct: 686 LGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMS 745

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
            EP   IW +LL+ CRIH N+E+GE  A +L  LE EK  +Y LLSN+YA  G+W DV +
Sbjct: 746 EEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQ 805

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R  MK   ++K  GCSW++      +F VG+R     ++I  + + L  +I  MGY P 
Sbjct: 806 VRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPD 865

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           TS   HD+ +EEK + L  HSEKLA+ YG++ T+ GT +R+ KNLRIC DCH+A   IS 
Sbjct: 866 TSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISK 925

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++  EI++RD+ RFHHF +G C+C  YW
Sbjct: 926 VMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 154/580 (26%), Positives = 293/580 (50%), Gaps = 47/580 (8%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + +I  Y    +P  + S    +     ++F WNA+I    R  L      +F++M+ + 
Sbjct: 124 TRIITMYAMCGSPDDSRSAFDALRSK--NLFQWNAVISSYSRNELYHEVLEMFIKMISKT 181

Query: 131 -WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
              PD +TFP V+KAC  +     G +VH ++  +G   ++FV NAL++ Y     +S A
Sbjct: 182 HLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDA 241

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
            +LFD M +    ++VSWN+++  ++ +GD +G  M             D  ++V  L  
Sbjct: 242 LKLFDIMPER---NLVSWNSMIRVFSDNGD-DGAFM------------PDVATVVTVLPV 285

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           CA      R ++ G+ +       ++ + K++V  NA++  YS+ G   D+  +FK    
Sbjct: 286 CA------REREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKL--- 336

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE---PNVVTLVSLLSGCASVGA 365
            N   NVV+W+ ++ G++  G  H   D+ RQM   G E    + VT+++ +  C     
Sbjct: 337 -NNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQM-LAGSEDVKADEVTILNAVPVCFDESV 394

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L   KE HCY++K+    D       ++ NA +  YAKC S+  A+ +F  I  +++ + 
Sbjct: 395 LPSLKELHCYSLKQEFVYDE------LLANAFVASYAKCGSLSYAQRVFHGI--RSKTLN 446

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  +IG Y+Q+  ++  L+L   +  ++  + P+ FT+   L AC++L +LR G+++H 
Sbjct: 447 SWNALIGGYAQS--SDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHG 504

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           +++RN  E  + FV   ++ +Y   G++ T +V+FD ++  ++VSW +++TG+  +G  +
Sbjct: 505 FIIRNWLERDL-FVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPE 563

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F QM   G+ P G++ + +  ACS    +  G +      K   +   A     I
Sbjct: 564 RALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHL-LEDNAFIACSI 622

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           +D+  +   + ++ ++  G+  E +   W A++ G  +H 
Sbjct: 623 IDMYAKNGAITQSSKVFNGLK-EKSAASWNAMIMGYGMHG 661



 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 206/436 (47%), Gaps = 34/436 (7%)

Query: 140 FVLKACGELPSSRCGSSVHAVIC-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
            +L+A G+      G  +H ++  S+   S+  +C  ++ MYA C +   +R  FD +  
Sbjct: 89  LLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRS 148

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               ++  WN ++++Y+++      L +F +M     +  D  +    + ACA +     
Sbjct: 149 K---NLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGI 205

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G     +     V +   V+D+   NA+V+ Y   G   DA  LF  M +     N+V+W
Sbjct: 206 GLAVHGL-----VVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPER----NLVSW 256

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +++I  ++  G     +            P+V T+V++L  CA    + +GK  H + +K
Sbjct: 257 NSMIRVFSDNGDDGAFM------------PDVATVVTVLPVCAREREIGVGKGVHGWAVK 304

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             LS+D     +L+V NAL+DMY+K   +  ++++F      N++V +W  M+G +S  G
Sbjct: 305 --LSLD----KELVVNNALMDMYSKWGCIIDSQMIFK--LNNNKNVVSWNTMVGGFSAEG 356

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
             +    L  QM    + VK +  T+  A+  C   + L   +++H Y L+ ++ +    
Sbjct: 357 DIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEF-VYDEL 415

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           +AN  +  Y++ G +  A+ VF  ++ + + SW +L+ GY        +  A  QM+  G
Sbjct: 416 LANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSG 475

Query: 559 LAPDGVTFLVLLYACS 574
           L PD  T   LL ACS
Sbjct: 476 LLPDNFTVCSLLSACS 491



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           D ++   +I MYA C S D +R  FDA+  KN  +  W  +I SYS+N   ++ L +F +
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRSAFDALRSKN--LFQWNAVISSYSRNELYHEVLEMFIK 176

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M  +  L+ P+ FT  C + ACA ++ +  G  +H  V++      + FV N L+  Y  
Sbjct: 177 MISKTHLL-PDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDL-FVGNALVSFYGT 234

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G +  A  +FD + +RN+VSW S++  +  +G  D A             PD  T + +
Sbjct: 235 HGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG-DDGA-----------FMPDVATVVTV 282

Query: 570 LYACSHSGMVDQG 582
           L  C+    +  G
Sbjct: 283 LPVCAREREIGVG 295


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/711 (37%), Positives = 392/711 (55%), Gaps = 68/711 (9%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           M+A+   L+ AR +F EM +    D VSW  +V    ++G     +     MT D     
Sbjct: 1   MFAKSGRLADARGVFAEMPER---DAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD-GFTP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVF 272
              +L N LS+CA     + G++                          CG  E A  VF
Sbjct: 57  TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           ERM V+ V SWNAMV+  + +G  + A +LF+ M   ++    V+W+A+IAGY Q G   
Sbjct: 117 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYNQNGLDA 172

Query: 333 EALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS--------- 382
           +AL +F R +    + P+  T+ S+LS CA++G + +GK+ H Y ++  ++         
Sbjct: 173 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 232

Query: 383 ----------------VDGSHPDDLMVIN--ALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
                           +D S   DL VI+  AL++ Y K   ++ AR MF  +   NRDV
Sbjct: 233 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVM--NNRDV 290

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             WT MI  Y QNG  ++A+ LF  M       +PN++TL+  L  CA LA L +G+QIH
Sbjct: 291 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGP--EPNSYTLAAVLSVCASLACLDYGKQIH 348

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMHGL 543
              +R+  E     V+N +I MY+RSG    AR +FD +  ++  ++WTS++     HG 
Sbjct: 349 CRAIRSLLEQ-SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ 407

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G++A   F++M + G+ PD +T++ +L ACSH+G V++G +Y+D +  E  I+    HYA
Sbjct: 408 GEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYA 467

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C+VDLL RA    EA E I  MP+EP  I W +LL+ CR+H N EL ELAA +LL ++  
Sbjct: 468 CMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPN 527

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
             G+Y+ ++N+Y+  GRW D ARI    K   V+K  G SW   +     F   D  HPQ
Sbjct: 528 NSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQ 587

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGT 783
              +Y + A + + IK  G+VP     LHDVDDE K +LL  HSEKLA+A+G+++T   T
Sbjct: 588 RDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKT 647

Query: 784 PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +R+ KNLR+C DCH+AI  IS + + EII+RD+ RFHHF++G C+CK YW
Sbjct: 648 TLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 237/495 (47%), Gaps = 74/495 (14%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A +  L M   G+ P ++T   VL +C    +   G  VH+ +   G  S V V N+++ 
Sbjct: 42  AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 101

Query: 179 MYARCDTLSYARQLFDEMFQPGIC----------------------------DIVSWNTI 210
           MY +C     A  +F+ M    +                              IVSWN +
Sbjct: 102 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 161

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------- 261
           +A Y Q+G     L LF+RM  +  +  D  ++ + LSACA+LG    GKQ         
Sbjct: 162 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 221

Query: 262 -----------------CGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFAL 302
                             G +E A+++ ++    D  V+S+ A++ GY +IG  E A  +
Sbjct: 222 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 281

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F  M       +VV W+A+I GY Q G   EA+D+FR M  CG EPN  TL ++LS CAS
Sbjct: 282 FGVMNNR----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 337

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           +  L  GK+ HC  I+ +L    S      V NA+I MYA+  S   AR MFD +  + +
Sbjct: 338 LACLDYGKQIHCRAIRSLLEQSSS------VSNAIITMYARSGSFPWARRMFDQVCWR-K 390

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           +  TWT MI + +Q+G   +A+ LF +M +    V+P+  T    L AC+    +  G++
Sbjct: 391 ETITWTSMIVALAQHGQGEEAVGLFEEMLRAG--VEPDRITYVGVLSACSHAGFVNEGKR 448

Query: 483 IHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYG 539
            +  + +N+++ + P +++  C++D+ +R+G    A+     +  + + ++W SL++   
Sbjct: 449 YYDQI-KNEHQ-IAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACR 506

Query: 540 MHGLGDKAHWAFDQM 554
           +H   + A  A +++
Sbjct: 507 VHKNAELAELAAEKL 521



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 143/305 (46%), Gaps = 44/305 (14%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSV 157
           S+  WNA+I    +  L   A +LF +M+      PDE+T   VL AC  L + R G  V
Sbjct: 154 SIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV 213

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--------------- 202
           HA I  +    N  V NAL++ YA+  ++  AR++ D+  +  +                
Sbjct: 214 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIG 273

Query: 203 ---------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
                          D+V+W  ++  Y Q+G  +  + LF  M      + +  +L   L
Sbjct: 274 DMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI-TCGPEPNSYTLAAVL 332

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM- 306
           S CASL     GKQ       + +   ++    VS NA++T Y+R GSF  A  +F ++ 
Sbjct: 333 SVCASLACLDYGKQI----HCRAIRSLLEQSSSVS-NAIITMYARSGSFPWARRMFDQVC 387

Query: 307 -RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
            R+E      +TW+++I   AQ G G EA+ +F +M   G+EP+ +T V +LS C+  G 
Sbjct: 388 WRKE-----TITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 442

Query: 366 LLLGK 370
           +  GK
Sbjct: 443 VNEGK 447



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 28/258 (10%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W A+I    +    D A  LF  M+  G  P+ YT   VL  C  L     G  +H 
Sbjct: 290 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 349

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC---DIVSWNTIVAAYAQ 216
               S  + +  V NA++ MYAR  +  +AR++FD+     +C   + ++W +++ A AQ
Sbjct: 350 RAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ-----VCWRKETITWTSMIVALAQ 404

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G  E  + LF  M     V+ D ++ V  LSAC+           G + E K+ ++++K
Sbjct: 405 HGQGEEAVGLFEEML-RAGVEPDRITYVGVLSACS---------HAGFVNEGKRYYDQIK 454

Query: 277 VKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            +  ++     +  MV   +R G F +A    ++M    V+ + + W ++++  A R H 
Sbjct: 455 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLS--ACRVHK 509

Query: 332 HEALDVFRQMQFCGLEPN 349
           +  L      +   ++PN
Sbjct: 510 NAELAELAAEKLLSIDPN 527


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 270/737 (36%), Positives = 407/737 (55%), Gaps = 36/737 (4%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN++I  +      + +   F  M R     D  T   +L ACG     + G  +H +I 
Sbjct: 420  WNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLIT 479

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             SG +SNV VCN+L++MYA+  +   A  +F  M  P   D++SWN+++A++ + G    
Sbjct: 480  KSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTM--PAR-DLISWNSMMASHVEDGKYSH 536

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
             ++L   M    K   + V+   ALSAC +L             E  K+     +     
Sbjct: 537  AILLLVEMLKTRKAM-NYVTFTTALSACYNL-------------EKLKIVHAFVIHFAVH 582

Query: 279  -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +++  N +VT Y + G  ++A  + K M + +V    VTW+A+I G+A     +  +  
Sbjct: 583  HNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDV----VTWNALIGGHADDKDPNATIQA 638

Query: 338  FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            F  M+  GL  N +T+V+LL  C S   LL     H   I   + V G   D   V ++L
Sbjct: 639  FNLMRREGLLSNYITIVNLLGTCMSPDYLL----KHGMPIHAHIVVAGFELDTY-VQSSL 693

Query: 398  IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
            I MYA+C  ++ +  +FD +A KN   +TW  +  + +  G   +AL    +M  ++  V
Sbjct: 694  ITMYAQCGDLNTSSYIFDVLANKNS--STWNAIFSANAHYGPGEEALKFIARM--RNDGV 749

Query: 458  KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
              + F+ S AL     L  L  G+Q+H+++++  +E L  +V N  +DMY + G+ID   
Sbjct: 750  DLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFE-LDEYVLNATMDMYGKCGEIDDVF 808

Query: 518  VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             +    K R+  SW  L++    HG   +A  AF +M   GL PD VTF+ LL ACSH G
Sbjct: 809  RILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGG 868

Query: 578  MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +VD+GL YF SM+ EFG+    EH  CI+DLLGR+ RL EA   I+ MP+ P   +W +L
Sbjct: 869  LVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSL 928

Query: 638  LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
            L  C++H N+ELG  AA+RL EL S  D +Y L SN+ A+  RW DV  +R  M+   +K
Sbjct: 929  LAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLK 988

Query: 698  KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            K+P CSW++ K    TF +GD+ HPQS +IY  L  L +  +  G++P TS+AL D D+E
Sbjct: 989  KKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEE 1048

Query: 758  EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            +K   L+ HSE++ALA+G++ +A G+P+RI KNLR+CGDCHS    +S I+  +I++RDS
Sbjct: 1049 QKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDS 1108

Query: 818  NRFHHFKEGSCTCKGYW 834
             RFHHF  G C+C  YW
Sbjct: 1109 YRFHHFHGGKCSCSDYW 1125



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 235/517 (45%), Gaps = 43/517 (8%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           H +     F+ K   E+     G ++HA+        N F  N L+ MY++  ++ YA+ 
Sbjct: 144 HSNPQVSRFLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQH 203

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD+M+     +  SWN +++ + + G     +  F  M  +  V      + + ++AC 
Sbjct: 204 VFDKMYDR---NDASWNNMISGFVRVGWYHKAMQFFCHMFEN-GVTPSSYVIASMVTACD 259

Query: 252 SLGTWSRGK--------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
             G  + G         +CG+M             +V    +++  Y   GS  +A  LF
Sbjct: 260 RSGCMTEGARQIHGYVVKCGLM------------SNVFVGTSLLHFYGTHGSVSEANKLF 307

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
           +++ +     N+V+W++++  YA  GH  E L+++R ++  GL     T+ +++  C   
Sbjct: 308 EEIEEP----NIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCG-- 361

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
              + G +T  Y I   +   G     + V N+LI M+    SV+ A  +F+ +  + RD
Sbjct: 362 ---MFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNM--QERD 416

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
             +W  +I + + NG   ++L  F  M +     K +  T+S  L AC     L++GR +
Sbjct: 417 TISWNSIITASAHNGRFEESLGHFFWMRRTHP--KTDYITISALLPACGSAQHLKWGRGL 474

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H  + ++  E  +  V N L+ MY+++G  + A +VF  +  R+++SW S+M  +   G 
Sbjct: 475 HGLITKSGLESNVC-VCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGK 533

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
              A     +M K   A + VTF   L AC +     + LK   +    F +        
Sbjct: 534 YSHAILLLVEMLKTRKAMNYVTFTTALSACYNL----EKLKIVHAFVIHFAVHHNLIIGN 589

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +V + G+   +DEA ++ + MP E   + W AL+ G
Sbjct: 590 TLVTMYGKFGLMDEAQKVCKIMP-ERDVVTWNALIGG 625



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 187/415 (45%), Gaps = 31/415 (7%)

Query: 257 SRGKQCGMMEEAK----KVFERMKVKDVVSWNAMVTG-----YSRIGSFEDAFALFKKMR 307
           SR  Q G  E ++    K    + VKDV+  N   T      YS+ GS + A  +F KM 
Sbjct: 150 SRFLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMY 209

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
             N      +W+ +I+G+ + G  H+A+  F  M   G+ P+   + S+++ C   G + 
Sbjct: 210 DRND----ASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMT 265

Query: 368 LG-KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            G ++ H Y +K  L        ++ V  +L+  Y    SV  A  +F+ I   N  + +
Sbjct: 266 EGARQIHGYVVKCGLM------SNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPN--IVS 317

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT ++  Y+ NG   + L ++  +     +   N  T++  +  C        G QI   
Sbjct: 318 WTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGN--TMATVIRTCGMFGDKTMGYQILGD 375

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           V+++  +     VAN LI M+     ++ A  VF+N+++R+ +SW S++T    +G  ++
Sbjct: 376 VIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEE 435

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           +   F  MR+     D +T   LL AC  +  +  G      ++K  G+ +       ++
Sbjct: 436 SLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKS-GLESNVCVCNSLL 494

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
            +  +A   ++A  +   MP     I W +++      ++VE G+ +   LL +E
Sbjct: 495 SMYAQAGSSEDAELVFHTMPARDL-ISWNSMMA-----SHVEDGKYSHAILLLVE 543



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 213/540 (39%), Gaps = 83/540 (15%)

Query: 44   LRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
            L  C +L ++ ++H  +I   + H  +  + L+  Y        A  +  +I P    V 
Sbjct: 560  LSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVC-KIMPER-DVV 617

Query: 102  WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS--RCGSSVHA 159
             WNALI      + P+   + F  M R G   +  T   +L  C   P    + G  +HA
Sbjct: 618  TWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMS-PDYLLKHGMPIHA 676

Query: 160  VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
             I  +GF+ + +V ++L+ MYA+C  L+ +  +FD +      +  +WN I +A A  G 
Sbjct: 677  HIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANK---NSSTWNAIFSANAHYGP 733

Query: 220  AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
             E  L   ARM  D  V  D  S   AL+   +L     G+Q       K  FE     D
Sbjct: 734  GEEALKFIARMRND-GVDLDQFSFSVALATIGNLTVLDEGQQLHSW-IIKLGFEL----D 787

Query: 280  VVSWNAMVTGYSRIGSFEDAFALF--KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                NA +  Y + G  +D F +    K+R +       +W+ +I+  A+ G   +A + 
Sbjct: 788  EYVLNATMDMYGKCGEIDDVFRILPIPKIRSKR------SWNILISALARHGFFRQATEA 841

Query: 338  FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            F +M   GL+P+ VT VSLLS C+  G +                      + L+  +++
Sbjct: 842  FHEMLDLGLKPDHVTFVSLLSACSHGGLV---------------------DEGLVYFSSM 880

Query: 398  IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
               +    +++    + D +                  ++G   +A     +M      V
Sbjct: 881  TSEFGVPTAIEHCVCIIDLLG-----------------RSGRLAEAEGFIDKM-----PV 918

Query: 458  KPNAFTLSCALMACARLAALRFGRQI--HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
             PN F     L AC     L  GR+     + L +  +      +N       R GD++ 
Sbjct: 919  PPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCAST-QRWGDVEN 977

Query: 516  ARVVFD--NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-----------RKEGLAPD 562
             R   +  +LK++   SW  L       G+GD+ H    Q+           R+EG  PD
Sbjct: 978  VRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMPD 1037


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/739 (35%), Positives = 408/739 (55%), Gaps = 72/739 (9%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +  HA I  SG  ++ ++   L+A Y+  +  + A  +   +  P    + S+++++ A 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDP---TVYSFSSLIYAL 91

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------- 261
            ++      + +F+RM     +  D   L N    CA L  +  GKQ             
Sbjct: 92  TKAKLFSQSIGVFSRMFSHGLIP-DTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMD 150

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG M +A+KVF+RM  KDVV+ +A++ GY+R G  E+   +  +M +
Sbjct: 151 AFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEK 210

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             ++ N+V+W+ +++G+ + G+  EA+ +F++M   G  P+ VT+ S+L        L +
Sbjct: 211 SGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNM 270

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK---------------------CKS- 406
           G++ H Y IK+ L  D        VI+A++DMY K                     C + 
Sbjct: 271 GRQIHGYVIKQGLLKDKC------VISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAY 324

Query: 407 ---------VDVARVMFDAIAPKNRD--VATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                    VD A  MF     +  +  V +WT +I   +QNG   +AL LF +M  Q  
Sbjct: 325 ITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREM--QVA 382

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            VKPN  T+   L AC  +AAL  GR  H + +R  + +    V + LIDMY++ G I  
Sbjct: 383 GVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVR-VHLLDDVHVGSALIDMYAKCGRIKM 441

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           +++VF+ +  +N+V W SLM GY MHG   +    F+ + +  L PD ++F  LL AC  
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+ D+G KYF+ MS+E+GI  R EHY+C+V+LLGRA +L EA +LI+ +P EP   +W 
Sbjct: 502 VGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWG 561

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALLN CR+  NV+L E+AA +L  LE E  G+Y L+SNIYA  G W +V  IR+ M+  G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCSW+Q K    T    D++HPQ  +I E +  + + ++  G+ P   FAL DV+
Sbjct: 622 LKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVE 681

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           ++E+  +L+ HSEKLA+ +G+L T  GTP+++ KNLRICGDCH+ I FIS     EI +R
Sbjct: 682 EQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIR 741

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D+NRFHHFK+G C+C  +W
Sbjct: 742 DTNRFHHFKDGICSCGDFW 760



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 258/518 (49%), Gaps = 84/518 (16%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + LIA+Y ++N  + A  +LQ I P P +V+ +++LI    + +L   +  +F +M   G
Sbjct: 54  AKLIASYSNYNCFNDADLILQSI-PDP-TVYSFSSLIYALTKAKLFSQSIGVFSRMFSHG 111

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD +  P + K C EL + + G  +H V C SG D + FV  +L  MY RC  +  AR
Sbjct: 112 LIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDAR 171

Query: 191 QLFD-------------------------------EMFQPGI-CDIVSWNTIVAAYAQSG 218
           ++FD                               EM + GI  +IVSWN I++ + +SG
Sbjct: 172 KVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSG 231

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-------GMMEEA--- 268
             +  +++F +M   +    D V++ + L +       + G+Q        G++++    
Sbjct: 232 YHKEAVIMFQKMH-HLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVI 290

Query: 269 ----------------KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                            K+F+  ++ +    NA +TG SR G  + A  +F   +++ ++
Sbjct: 291 SAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKME 350

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           LNVV+W+++IAG AQ G   EAL++FR+MQ  G++PN VT+ S+L  C ++ AL  G+ T
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRST 410

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H + ++  L       DD+ V +ALIDMYAKC  + +++++F+ +  KN  +  W  ++ 
Sbjct: 411 HGFAVRVHLL------DDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKN--LVCWNSLMN 462

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAYV 487
            YS +G A + +++F  + +    +KP+  + +  L AC ++         F      Y 
Sbjct: 463 GYSMHGKAKEVMSIFESLMRTR--LKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYG 520

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
           ++ + E       +C++++  R+G +  A   +D +K+
Sbjct: 521 IKPRLEHY-----SCMVNLLGRAGKLQEA---YDLIKE 550



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 138/331 (41%), Gaps = 44/331 (13%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQ 125
           V  S L+  Y         + +L  +  S    ++  WN ++    R      A  +F +
Sbjct: 183 VTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQK 242

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M   G+ PD+ T   VL + G+  +   G  +H  +   G   +  V +A++ MY +   
Sbjct: 243 MHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGH 302

Query: 186 LSYARQLFD--EMFQPGIC------------------------------DIVSWNTIVAA 213
           +    +LFD  EM + G+C                              ++VSW +I+A 
Sbjct: 303 VYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAG 362

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
            AQ+G     L LF  M     V+ + V++ + L AC ++     G+          + +
Sbjct: 363 CAQNGKDIEALELFREMQ-VAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD 421

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                DV   +A++  Y++ G  + +  +F  M  +N+    V W++++ GY+  G   E
Sbjct: 422 -----DVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL----VCWNSLMNGYSMHGKAKE 472

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            + +F  +    L+P+ ++  SLLS C  VG
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVG 503



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 134/323 (41%), Gaps = 57/323 (17%)

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V  W ++I    +      A  LF +M   G  P+  T P +L ACG + +   G S 
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRST 410

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H          +V V +AL+ MYA+C  +  ++ +F+ M      ++V WN+++  Y+  
Sbjct: 411 HGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK---NLVCWNSLMNGYSMH 467

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMK 276
           G A+  + +F  +    +++ D +S  + LSAC  +G    G K   MM E   +  R++
Sbjct: 468 GKAKEVMSIFESLM-RTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLE 526

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMR-----------------QENVKL------ 313
                 ++ MV    R G  ++A+ L K++                  Q NV L      
Sbjct: 527 -----HYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQ 581

Query: 314 --------NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
                   N  T+  +   YA +G   E   +  +M+  GL+ N         GC+ +  
Sbjct: 582 KLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKN--------PGCSWIQV 633

Query: 366 LLLGKETHCYTIKRVLSVDGSHP 388
                +   YT+   L+ D SHP
Sbjct: 634 -----KNKVYTL---LACDKSHP 648


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 288/832 (34%), Positives = 450/832 (54%), Gaps = 49/832 (5%)

Query: 13   SKTPLTLNHLFTNIKLFSVT-------TTPCIKITSLLLRQCKSLTQVYL---IHQQIIV 62
            S+  L    L T I++ S T       T PC+      ++ C  ++ V +   +H  ++ 
Sbjct: 517  SRNELYDEVLETFIEMISTTDLLPDHFTYPCV------IKACAGMSDVGIGLAVHGLVVK 570

Query: 63   QNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120
              L       + L++ Y +H   + AL L   I P   ++  WN++IR        + +F
Sbjct: 571  TGLVEDVFVGNALVSFYGTHGFVTDALQLFD-IMPER-NLVSWNSMIRVFSDNGFSEESF 628

Query: 121  RLFLQMMRR----GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
             L  +MM       + PD  T   VL  C        G  VH        D  + + NAL
Sbjct: 629  LLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNAL 688

Query: 177  MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVK 235
            M MY++C  ++ A+ +F         ++VSWNT+V  ++  GD  G   +  +M  G   
Sbjct: 689  MDMYSKCGCITNAQMIFKMNNNK---NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 745

Query: 236  VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
            V+ D V+++NA+  C         K+       K+ F    V + +  NA V  Y++ GS
Sbjct: 746  VKADEVTILNAVPVCFHESFLPSLKELHCYS-LKQEF----VYNELVANAFVASYAKCGS 800

Query: 296  FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
               A  +F  +R + V     +W+A+I G+AQ      +LD   QM+  GL P+  T+ S
Sbjct: 801  LSYAQRVFHGIRSKTVN----SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 856

Query: 356  LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            LLS C+ + +L LGKE H + I+  L        DL V  +++ +Y  C  +   + +FD
Sbjct: 857  LLSACSKLKSLRLGKEVHGFIIRNWLE------RDLFVYLSVLSLYIHCGELCTVQALFD 910

Query: 416  AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            A+  +++ + +W  +I  Y QNG  + AL +F QM      ++    ++     AC+ L 
Sbjct: 911  AM--EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYG--IQLCGISMMPVFGACSLLP 966

Query: 476  ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            +LR GR+ HAY L++  E    F+A  LIDMY+++G I  +  VF+ LK+++  SW +++
Sbjct: 967  SLRLGREAHAYALKHLLED-DAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 1025

Query: 536  TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
             GYG+HGL  +A   F++M++ G  PD +TFL +L AC+HSG++ +GL+Y D M   FG+
Sbjct: 1026 MGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGL 1085

Query: 596  SARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
                +HYAC++D+LGRA +LD+A+ ++ E M  E    IW +LL+ CRIH N+E+GE  A
Sbjct: 1086 KPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVA 1145

Query: 655  NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
             +L ELE EK  +Y LLSN+YA  G+W+DV ++R  M    ++K  GCSW++      +F
Sbjct: 1146 AKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSF 1205

Query: 715  FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
             VG+R     ++I  + + L  +I  MGY P T    HD+ +EEK + L  HSEKLAL Y
Sbjct: 1206 VVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTY 1265

Query: 775  GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
            G++ T+ GT IR+ KNLRIC DCH+A   IS ++  EI++RD+ RFHHFK G
Sbjct: 1266 GLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 156/554 (28%), Positives = 284/554 (51%), Gaps = 33/554 (5%)

Query: 99   SVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++F WNA+I    R  L D     F++M+      PD +T+P V+KAC  +     G +V
Sbjct: 505  NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 564

Query: 158  HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            H ++  +G   +VFV NAL++ Y     ++ A QLFD M +    ++VSWN+++  ++ +
Sbjct: 565  HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER---NLVSWNSMIRVFSDN 621

Query: 218  GDAEGGLMLFARM---TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            G +E   +L   M    GD     D  +LV  L  CA      R ++ G+ +       +
Sbjct: 622  GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA------REREIGLGKGVHGWAVK 675

Query: 275  MKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            +++ K++V  NA++  YS+ G   +A  +FK     N   NVV+W+ ++ G++  G  H 
Sbjct: 676  LRLDKELVLNNALMDMYSKCGCITNAQMIFKM----NNNKNVVSWNTMVGGFSAEGDTHG 731

Query: 334  ALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
              DV RQM   G  ++ + VT+++ +  C     L   KE HCY++K+    +       
Sbjct: 732  TFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE------ 785

Query: 392  MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            +V NA +  YAKC S+  A+ +F  I  +++ V +W  +IG ++Q+     +L    QM 
Sbjct: 786  LVANAFVASYAKCGSLSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK 843

Query: 452  QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
                L  P++FT+   L AC++L +LR G+++H +++RN  E  + FV   ++ +Y   G
Sbjct: 844  ISGLL--PDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL-FVYLSVLSLYIHCG 900

Query: 512  DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ++ T + +FD ++ +++VSW +++TGY  +G  D+A   F QM   G+   G++ + +  
Sbjct: 901  ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 960

Query: 572  ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
            ACS    +  G +      K   +   A     ++D+  +   + ++ ++  G+  E + 
Sbjct: 961  ACSLLPSLRLGREAHAYALKHL-LEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 1018

Query: 632  IIWVALLNGCRIHA 645
              W A++ G  IH 
Sbjct: 1019 ASWNAMIMGYGIHG 1032



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 211/443 (47%), Gaps = 32/443 (7%)

Query: 140 FVLKACGELPSSRCGSSVHAVIC-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
            +L+A G+      G  +H ++  S+   ++  +C  ++ MYA C +   +R +FD +  
Sbjct: 444 LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 503

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               ++  WN ++++Y+++   +  L  F  M     +  D  +    + ACA +     
Sbjct: 504 K---NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 560

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G     +     V +   V+DV   NA+V+ Y   G   DA  LF  M +     N+V+W
Sbjct: 561 GLAVHGL-----VVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER----NLVSW 611

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQF----CGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           +++I  ++  G   E+  +  +M          P+V TLV++L  CA    + LGK  H 
Sbjct: 612 NSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHG 671

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           + +K  L +D     +L++ NAL+DMY+KC  +  A+++F      N++V +W  M+G +
Sbjct: 672 WAVK--LRLD----KELVLNNALMDMYSKCGCITNAQMIFK--MNNNKNVVSWNTMVGGF 723

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           S  G  +    +  QM    + VK +  T+  A+  C   + L   +++H Y L+ ++ +
Sbjct: 724 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF-V 782

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD-- 552
               VAN  +  Y++ G +  A+ VF  ++ + V SW +L+ G   H   +    + D  
Sbjct: 783 YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG---HAQSNDPRLSLDAH 839

Query: 553 -QMRKEGLAPDGVTFLVLLYACS 574
            QM+  GL PD  T   LL ACS
Sbjct: 840 LQMKISGLLPDSFTVCSLLSACS 862



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 179/385 (46%), Gaps = 39/385 (10%)

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
           ++ + ++GD +          GD +   D   LV        L   + GK+  + E  +K
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVRE---ALGLLLQASGKRKDI-EMGRK 460

Query: 271 VFE------RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           + +      R++  DV+    ++T Y+  GS +D+  +F  +R +N+      W+AVI+ 
Sbjct: 461 IHQLVSGSTRLRNDDVLC-TRIITMYAMCGSPDDSRFVFDALRSKNL----FQWNAVISS 515

Query: 325 YAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           Y++     E L+ F +M     L P+  T   ++  CA +  + +G   H   +K  L  
Sbjct: 516 YSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLV- 574

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                +D+ V NAL+  Y     V  A  +FD I P+ R++ +W  MI  +S NG + ++
Sbjct: 575 -----EDVFVGNALVSFYGTHGFVTDALQLFD-IMPE-RNLVSWNSMIRVFSDNGFSEES 627

Query: 444 LALFPQMFQQ--DKLVKPNAFTLSCALMACARLAALRFGRQIHAYV--LRNQYEMLIPFV 499
             L  +M ++  D    P+  TL   L  CAR   +  G+ +H +   LR   E+++   
Sbjct: 628 FLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL--- 684

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK--- 556
            N L+DMYS+ G I  A+++F     +NVVSW +++ G+   G     H  FD +R+   
Sbjct: 685 NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQMLA 741

Query: 557 --EGLAPDGVTFLVLLYACSHSGMV 579
             E +  D VT L  +  C H   +
Sbjct: 742 GGEDVKADEVTILNAVPVCFHESFL 766



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 8/198 (4%)

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           +D ++   +I MYA C S D +R +FDA+  KN  +  W  +I SYS+N   ++ L  F 
Sbjct: 473 NDDVLCTRIITMYAMCGSPDDSRFVFDALRSKN--LFQWNAVISSYSRNELYDEVLETFI 530

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M     L+ P+ FT  C + ACA ++ +  G  +H  V++      + FV N L+  Y 
Sbjct: 531 EMISTTDLL-PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV-FVGNALVSFYG 588

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPDGV 564
             G +  A  +FD + +RN+VSW S++  +  +G  +++     +M +E       PD  
Sbjct: 589 THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVA 648

Query: 565 TFLVLLYACSHSGMVDQG 582
           T + +L  C+    +  G
Sbjct: 649 TLVTVLPVCAREREIGLG 666



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 32/237 (13%)

Query: 449 QMFQQDKLVKPNAF-----TLSCALMACARLAALRFGRQIHAYV-----LRNQYEMLIPF 498
           Q F  D     +AF      L   L A  +   +  GR+IH  V     LRN        
Sbjct: 422 QEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRND-----DV 476

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKE 557
           +   +I MY+  G  D +R VFD L+ +N+  W ++++ Y  + L D+    F +M    
Sbjct: 477 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 536

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKY-FDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            L PD  T+  ++ AC  +GM D G+      +  + G+         +V   G    + 
Sbjct: 537 DLLPDHFTYPCVIKAC--AGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 594

Query: 617 EAVELIEGMPMEPTPIIWVALL-----NGCRIHANVELGELAANRLLELESEKDGSY 668
           +A++L + MP E   + W +++     NG    + + LGE+       +E   DG++
Sbjct: 595 DALQLFDIMP-ERNLVSWNSMIRVFSDNGFSEESFLLLGEM-------MEENGDGAF 643


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 281/825 (34%), Positives = 443/825 (53%), Gaps = 63/825 (7%)

Query: 47  CKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           C  + +   +H++I         +  + LI+ Y   ++   A S+ + +     +V  WN
Sbjct: 20  CGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           A+I    +      A  L+ +M  +G   D  TF  VL AC  L   R    +H  +  S
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGR---EIHNRVFYS 136

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G DS   + NAL+ MYAR  ++  A+++F  +      D  SWN ++ A++QSGD  G L
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR---DETSWNAVILAHSQSGDWSGAL 193

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN 284
            +F  M  DVK   +  + +N +S  ++      G++    E     F+     D+V   
Sbjct: 194 RIFKEMKCDVKP--NSTTYINVISGFSTPEVLPEGRKI-HAEIVANGFD----TDLVVAT 246

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           A++  Y + GS  +A  +F KM+    K ++V+W+ +I  Y   G  HEAL++++++   
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMK----KRDMVSWNVMIGCYVLNGDFHEALELYQKLDME 302

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G +    T VS+L  C+SV AL  G+  H + ++R L        ++ V  AL++MYAKC
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD------SEVAVATALVNMYAKC 356

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA---LFPQMFQQDKL----- 456
            S++ AR +F+A+  KNRD   W+ +IG+Y+ NG   DA     +F ++  +D +     
Sbjct: 357 GSLEEARKVFNAM--KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAM 414

Query: 457 -------------------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
                                    +KP+A T    L ACA L  L   + +HA +  ++
Sbjct: 415 ITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESE 474

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            E  +  V N LI+MY+R G ++ A  +F   K++ VVSWT+++  +  +G   +A   F
Sbjct: 475 LESNV-VVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLF 533

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M  EG+ PD VT+  +L+ C+H G ++QG +YF  M++   ++  A+H+A +VDLLGR
Sbjct: 534 QEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGR 593

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           + RL +A EL+E MP EP P+ W+  L  CRIH  +ELGE AA R+ EL+      Y  +
Sbjct: 594 SGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAM 653

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNIYA  G W+ VA +R  M+  G+KK PG S+++       F  G + HP++ +I E L
Sbjct: 654 SNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEEL 713

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKN 790
             L   ++A GYVP T   LHDV + EK  +L  HSEK+A+A+G++++   G PIR+ KN
Sbjct: 714 TRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKN 773

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHF-KEGSCTCKGYW 834
           LR+C DCH+A  FI+ I   +II+RD NRFH F  +G C+C  YW
Sbjct: 774 LRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 187/399 (46%), Gaps = 66/399 (16%)

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETH----CYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           +P+ VT +++L  C+S G ++ G+  H    C   +R          D MV NALI MY 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFER----------DTMVGNALISMYG 53

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC S+  AR +F+++  + R+V +W  MI +Y+QNG + +AL L+ +M  Q   +  +  
Sbjct: 54  KCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQG--LGTDHV 111

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--VANCLIDMYSRSGDIDTARVVF 520
           T    L AC+ LA    GR+IH  V    Y  L  F  +AN L+ MY+R G +  A+ +F
Sbjct: 112 TFVSVLGACSSLAQ---GREIHNRVF---YSGLDSFQSLANALVTMYARFGSVGDAKRMF 165

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
            +L+ R+  SW +++  +   G    A   F +M+ + + P+  T++ ++   S   ++ 
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLP 224

Query: 581 QGLKY--------FDS-------MSKEFGISARAEHYACIVDLLGRANRLD--------- 616
           +G K         FD+       +   +G    +     + D + + + +          
Sbjct: 225 EGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 617 ------EAVELIEGMPMEP---TPIIWVALLNGCRIHANVELGELAANRLLE--LESEKD 665
                 EA+EL + + ME    T   +V++L  C     +  G L  + +LE  L+SE  
Sbjct: 285 LNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV- 343

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
              T L N+YA  G  ++  ++ + MK+     R   +W
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKN-----RDAVAW 377


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 396/678 (58%), Gaps = 45/678 (6%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           D L YA  +F+ + +P   + + WNT++  +A S D    L L+  M   + +  +  + 
Sbjct: 12  DGLPYATSVFETIQEP---NQLIWNTMIRGHALSSDPVSSLTLYVCMVS-LGLLPNSYTF 67

Query: 244 VNALSACASLGTWSRGKQCG--------------------------MMEEAKKVFERMKV 277
              L +CA   T++ G+Q                             +E+A KVF+R   
Sbjct: 68  PFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSH 127

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +DVVS+ A++TGY+  G    A  LF ++  ++V    V+W+A+I+GYA+ G   EAL++
Sbjct: 128 RDVVSYTALITGYASRGDIRSAQKLFDEIPVKDV----VSWNAMISGYAETGCYKEALEL 183

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M    + P+  T V++LS CA  G++ LG++ H +        D     +L ++NAL
Sbjct: 184 FEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVD------DHGFDSNLKIVNAL 237

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID+Y+KC  V+ A  +F  ++ K  DV +W  +IG Y+      +AL LF +M +  +  
Sbjct: 238 IDLYSKCGEVETACGLFQGLSYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 293

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML-IPFVANCLIDMYSRSGDIDTA 516
            PN  T+   L ACA L A+  GR IH Y+ +    +     +   LIDMY++ GDI+ A
Sbjct: 294 TPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 353

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF+++  +++ SW +++ G+ MHG  D +   F +MRK G+ PD +TF+ LL ACSHS
Sbjct: 354 HQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GM+D G   F SM++++ ++ + EHY C++DLLG +    EA E+I  M MEP  +IW +
Sbjct: 414 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 473

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  C++H NVEL E  A  L+++E E   SY LLSNIYA+AGRW+DVARIR+L+    +
Sbjct: 474 LLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCM 533

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PGCS ++       F VGD+ HPQ+++IY +L  +   ++  G+VP TS  L ++++
Sbjct: 534 KKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 593

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K   L  HSEKLA+A+G+++T PGT + I KNLR+C +CH A   +S I   EI+ RD
Sbjct: 594 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARD 653

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHF++G C+C  YW
Sbjct: 654 RTRFHHFRDGVCSCNDYW 671



 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 252/505 (49%), Gaps = 58/505 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +IR       P ++  L++ M+  G  P+ YTFPF+LK+C +  +   G  +H  + 
Sbjct: 32  WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91

Query: 163 SSGFDSNVFVCNALMAMYARC----------------DTLSY---------------ARQ 191
             GFD +++V  +L++MY +                 D +SY               A++
Sbjct: 92  KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQK 151

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LFDE+    + D+VSWN +++ YA++G  +  L LF  M   + V+ D  + V  LSACA
Sbjct: 152 LFDEI---PVKDVVSWNAMISGYAETGCYKEALELFEEMM-KMNVRPDESTYVTVLSACA 207

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
             G+   G+Q     +       +K+      NA++  YS+ G  E A  LF+ +  +  
Sbjct: 208 HSGSIELGRQVHSWVDDHGFDSNLKIV-----NALIDLYSKCGEVETACGLFQGLSYK-- 260

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             +V++W+ +I GY       EAL +F++M   G  PN VT++S+L  CA +GA+ +G+ 
Sbjct: 261 --DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRW 318

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y  KR+  V  +      +  +LIDMYAKC  ++ A  +F+++  K+  +++W  MI
Sbjct: 319 IHVYIDKRLKGVTNASS----LRTSLIDMYAKCGDIEAAHQVFNSMLHKS--LSSWNAMI 372

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             ++ +G A+ +  LF +M +    ++P+  T    L AC+    L  GR I   + ++ 
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIG--IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD- 429

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAH 548
           Y+M  P + +  C+ID+   SG    A  + + ++ + + V W SL+    MHG  + A 
Sbjct: 430 YKM-TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAE 488

Query: 549 -WAFDQMRKEGLAPDGVTFLVLLYA 572
            +A + ++ E   P     L  +YA
Sbjct: 489 SFAQNLIKIEPENPSSYILLSNIYA 513



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 172/435 (39%), Gaps = 89/435 (20%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y S      A  L   I      V  WNA+I           A  LF +MM+    
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVK--DVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE T+  VL AC    S   G  VH+ +   GFDSN+ + NAL+ +Y++C  +  A  L
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  +      D++SWNT++  Y      +  L+LF  M    +   D V++++ L ACA 
Sbjct: 254 FQGLSYK---DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND-VTMLSVLPACAH 309

Query: 253 LGTWSRGK----------------------------QCGMMEEAKKVFERMKVKDVVSWN 284
           LG    G+                            +CG +E A +VF  M  K + SWN
Sbjct: 310 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 369

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM--- 341
           AM+ G++  G  + +F LF +MR+  ++ + +T+  +++  +  G       +FR M   
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD 429

Query: 342 ------------------------------QFCGLEPNVVTLVSLLSGCASVGALLLG-- 369
                                             +EP+ V   SLL  C   G + L   
Sbjct: 430 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAES 489

Query: 370 ----------KETHCYTIKRVLSVDGSHPDDLMVINALID-----MYAKCKSVDVARVMF 414
                     +    Y +   +       +D+  I AL++         C S++V  V+F
Sbjct: 490 FAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVF 549

Query: 415 -----DAIAPKNRDV 424
                D   P+NR++
Sbjct: 550 EFVVGDKFHPQNREI 564


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/713 (38%), Positives = 413/713 (57%), Gaps = 37/713 (5%)

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            G+  +++ F  +LK    +  +    SVHA +   G  ++ FV  AL+  Y+ C  +  
Sbjct: 98  EGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDA 157

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVN 245
           ARQ+FD ++     D+VSW  +VA YA++   E  L+LF +M    ++ G   +  ++  
Sbjct: 158 ARQVFDGIYFK---DMVSWTGMVACYAENYCHEDSLLLFCQM----RIMGYRPNNFTISA 210

Query: 246 ALSACASLGTWSRGKQ---CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
           AL +C  L  +  GK    C +    K  ++R    D+    A++  Y++ G   +A   
Sbjct: 211 ALKSCNGLEAFKVGKSVHGCAL----KVCYDR----DLYVGIALLELYTKSGEIAEAQQF 262

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCA 361
           F++M ++++    + WS +I+ YAQ     EAL++F R  Q   + PN  T  S+L  CA
Sbjct: 263 FEEMPKDDL----IPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACA 318

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           S+  L LG + H   +K  L        ++ V NAL+D+YAKC  ++ +  +F     KN
Sbjct: 319 SLVLLNLGNQIHSCVLKVGLD------SNVFVSNALMDVYAKCGEIENSVKLFTGSTEKN 372

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
                W  +I  Y Q G    AL LF  M   D  ++P   T S  L A A L AL  GR
Sbjct: 373 E--VAWNTIIVGYVQLGDGEKALNLFSNMLGLD--IQPTEVTYSSVLRASASLVALEPGR 428

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           QIH+  ++  Y      VAN LIDMY++ G ID AR+ FD + +++ VSW +L+ GY +H
Sbjct: 429 QIHSLTIKTMYNK-DSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIH 487

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           GLG +A   FD M++    P+ +TF+ +L ACS++G++D+G  +F SM +++GI    EH
Sbjct: 488 GLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEH 547

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           Y C+V LLGR+ + DEAV+LI  +P +P+ ++W ALL  C IH N++LG++ A R+LE+E
Sbjct: 548 YTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEME 607

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            + D ++ LLSN+YA A RW +VA +R  MK   VKK PG SWV+ +     F VGD +H
Sbjct: 608 PQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSH 667

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P  + I+ +L  L ++ +  GYVP  S  L DV+D+EK  LL+ HSE+LALA+G++    
Sbjct: 668 PNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPS 727

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G  IRI KNLRIC DCH+ I  +S I+  EI++RD NRFHHF++G C+C  YW
Sbjct: 728 GCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 219/442 (49%), Gaps = 27/442 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++         +++  LF QM   G+ P+ +T    LK+C  L + + G SVH    
Sbjct: 173 WTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCAL 232

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +D +++V  AL+ +Y +   ++ A+Q F+EM +    D++ W+ +++ YAQS  ++ 
Sbjct: 233 KVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKD---DLIPWSLMISRYAQSDKSKE 289

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L LF RM     V  +  +  + L ACASL   + G Q         V +     +V  
Sbjct: 290 ALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQI-----HSCVLKVGLDSNVFV 344

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++ G  E++  LF    ++    N V W+ +I GY Q G G +AL++F  M 
Sbjct: 345 SNALMDVYAKCGEIENSVKLFTGSTEK----NEVAWNTIIVGYVQLGDGEKALNLFSNML 400

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              ++P  VT  S+L   AS+ AL  G++ H  TIK + + D       +V N+LIDMYA
Sbjct: 401 GLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDS------VVANSLIDMYA 454

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +D AR+ FD +    +D  +W  +I  YS +G   +AL LF  M Q +   KPN  
Sbjct: 455 KCGRIDDARLTFDKM--DKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNS--KPNKL 510

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           T    L AC+    L  GR     +L++    + P + +  C++ +  RSG  D A  + 
Sbjct: 511 TFVGVLSACSNAGLLDKGRAHFKSMLQDY--GIEPCIEHYTCMVWLLGRSGQFDEAVKLI 568

Query: 521 DNLK-QRNVVSWTSLMTGYGMH 541
             +  Q +V+ W +L+    +H
Sbjct: 569 GEIPFQPSVMVWRALLGACVIH 590



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 166/649 (25%), Positives = 283/649 (43%), Gaps = 114/649 (17%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D +++  +L+          G S+H  I   G   ++F  N L+  Y     L  A +LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGD------------AEGG----------LMLFARM- 230
           DEM    + + VS+ T+   +++S               EG           L L   M 
Sbjct: 62  DEM---PLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMD 118

Query: 231 -----------TGDVKVQGD---GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
                         +  Q D   G +L++A S             CG ++ A++VF+ + 
Sbjct: 119 LADTCLSVHAYVYKLGHQADAFVGTALIDAYSV------------CGNVDAARQVFDGIY 166

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            KD+VSW  MV  Y+     ED+  LF +MR              I GY           
Sbjct: 167 FKDMVSWTGMVACYAENYCHEDSLLLFCQMR--------------IMGY----------- 201

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
                      PN  T+ + L  C  + A  +GK  H   +K        +  DL V  A
Sbjct: 202 ----------RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC------YDRDLYVGIA 245

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+++Y K   +  A+  F+ + PK+ D+  W++MI  Y+Q+  + +AL LF +M +Q  +
Sbjct: 246 LLELYTKSGEIAEAQQFFEEM-PKD-DLIPWSLMISRYAQSDKSKEALELFCRM-RQSSV 302

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V PN FT +  L ACA L  L  G QIH+ VL+   +  + FV+N L+D+Y++ G+I+ +
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNV-FVSNALMDVYAKCGEIENS 361

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +F    ++N V+W +++ GY   G G+KA   F  M    + P  VT+  +L A +  
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             ++ G +   S++ +   +  +     ++D+  +  R+D+A    + M  +   + W A
Sbjct: 422 VALEPG-RQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQD-EVSWNA 479

Query: 637 LLNGCRIHANVELGELAAN--RLLELESEKDGSYTLLSNIYA--NAGRW-KDVARIRSLM 691
           L+ G  IH    LG  A N   +++  + K    T +  + A  NAG   K  A  +S++
Sbjct: 480 LICGYSIHG---LGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSML 536

Query: 692 KHTGVK---KRPGC-SWVQGKEG---TATFFVGDRTHPQSQKIYEILAG 733
           +  G++   +   C  W+ G+ G    A   +G+     S  ++  L G
Sbjct: 537 QDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLG 585


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/737 (36%), Positives = 411/737 (55%), Gaps = 36/737 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I  +V     + +   F QM       D  T   +L  CG   + R G  +H ++ 
Sbjct: 229 WNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVV 288

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SG +SNV VCN+L++MY++      A  +F +M +    D++SWN+++A++  +G+   
Sbjct: 289 KSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRER---DLISWNSMMASHVDNGNYPR 345

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV----- 277
            L L   M    K   + V+   ALSAC +L             E  K+     +     
Sbjct: 346 ALELLIEMLQTRKAT-NYVTFTTALSACYNL-------------ETLKIVHAFVILLGLH 391

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +++  NA+VT Y + GS   A  + K M   +     VTW+A+I G+A     + A++ 
Sbjct: 392 HNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDE----VTWNALIGGHADNKEPNAAIEA 447

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F  ++  G+  N +T+V+LLS   S   LL     H   I   + V G   +   V ++L
Sbjct: 448 FNLLREEGVPVNYITIVNLLSAFLSPDDLL----DHGMPIHAHIVVAGFELETF-VQSSL 502

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MYA+C  ++ +  +FD +A KN   +TW  ++ + +  G   +AL L  +M  ++  +
Sbjct: 503 ITMYAQCGDLNTSNYIFDVLANKNS--STWNAILSANAHYGPGEEALKLIIKM--RNDGI 558

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
             + F+ S A      L  L  G+Q+H+ ++++ +E    +V N  +DMY + G+ID   
Sbjct: 559 HLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFES-NDYVLNATMDMYGKCGEIDDVF 617

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +    + R+  SW  L++    HG   +A  AF +M   GL PD VTF+ LL ACSH G
Sbjct: 618 RILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGG 677

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +VD+GL YF SMS +FG+    EH  CI+DLLGRA +L EA   I  MP+ PT ++W +L
Sbjct: 678 LVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSL 737

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  C+IH N+EL   AA+RL EL+S  D +Y L SN+ A+  RW+DV  +R  M+   +K
Sbjct: 738 LAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIK 797

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K+P CSWV+ K    TF +GD+ HPQ+ +IY  L  L + I+  GY+P TS++L D D+E
Sbjct: 798 KKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEE 857

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K   L+ HSE++ALA+G++ ++ G+P+RI KNLR+CGDCHS    +S II  +IILRD+
Sbjct: 858 QKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDA 917

Query: 818 NRFHHFKEGSCTCKGYW 834
            RFHHF  G C+C  YW
Sbjct: 918 YRFHHFSSGKCSCSDYW 934



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 152/652 (23%), Positives = 271/652 (41%), Gaps = 114/652 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS-SVHAVI 161
           WN L+   VR+     A + F  M+  G  P  Y    ++ AC        G+  VHA +
Sbjct: 26  WNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHV 85

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              G   +VFV  +L+  Y     ++    +F E+ +P   +IVSW +++  YA +G  +
Sbjct: 86  IKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEP---NIVSWTSLMVGYAYNGCVK 142

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
             + ++ R+  D  V  +  ++   + +C  L     G Q                    
Sbjct: 143 EVMSVYRRLRRD-GVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSL 201

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                 C  +EEA  VF+ MK +D +SWN+++T     G  E +   F +MR  + K + 
Sbjct: 202 ISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDY 261

Query: 316 VTWSA-----------------------------------VIAGYAQRGHGHEALDVFRQ 340
           +T SA                                   +++ Y+Q G   +A  VF +
Sbjct: 262 ITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHK 321

Query: 341 MQFCGL-------------------------------EPNVVTLVSLLSGCASVGALLLG 369
           M+   L                                 N VT  + LS C ++  L   
Sbjct: 322 MRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETL--- 378

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           K  H + I     + G H  +L++ NAL+ MY K  S+  A+ +   I P +RD  TW  
Sbjct: 379 KIVHAFVI-----LLGLH-HNLIIGNALVTMYGKFGSMAAAQRVC-KIMP-DRDEVTWNA 430

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA-CARLAALRFGRQIHAYVL 488
           +IG ++ N   N A+  F  +  +++ V  N  T+   L A  +    L  G  IHA+++
Sbjct: 431 LIGGHADNKEPNAAIEAFNLL--REEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIV 488

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
              +E L  FV + LI MY++ GD++T+  +FD L  +N  +W ++++    +G G++A 
Sbjct: 489 VAGFE-LETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEAL 547

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
               +MR +G+  D  +F V      +  ++D+G +   S+  + G  +        +D+
Sbjct: 548 KLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEG-QQLHSLIIKHGFESNDYVLNATMDM 606

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
            G+   +D+   ++   P   +   W  L++    H   +    A + +L+L
Sbjct: 607 YGKCGEIDDVFRILP-QPRSRSQRSWNILISALARHGFFQQAREAFHEMLDL 657



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 214/489 (43%), Gaps = 82/489 (16%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY++  ++ +A+ +FD+M +    +  SWN +++ + + G  +  +  F  M  +  V+ 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPER---NEASWNNLMSGFVRVGWYQKAMQFFCHML-EHGVRP 56

Query: 239 DGVSLVNALSACASLGTWSRGK--------QCGM-------------------MEEAKKV 271
                 + ++AC   G  + G         +CG+                   + E   V
Sbjct: 57  SSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMV 116

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+ ++  ++VSW +++ GY+  G  ++  ++++++R++ V  N    + VI         
Sbjct: 117 FKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVI--------- 167

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
                     + CG+      LV  + G   +G++          IK  L    S     
Sbjct: 168 ----------RSCGV------LVDKMLGYQVLGSV----------IKSGLDTTVS----- 196

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V N+LI M+  C S++ A  +FD +  K RD  +W  +I +   NG    +L  F QM 
Sbjct: 197 -VANSLISMFGNCDSIEEASCVFDDM--KERDTISWNSIITASVHNGHCEKSLEYFSQM- 252

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            +    K +  T+S  L  C     LR+GR +H  V+++  E  +  V N L+ MYS++G
Sbjct: 253 -RYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVC-VCNSLLSMYSQAG 310

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
             + A  VF  +++R+++SW S+M  +  +G   +A     +M +   A + VTF   L 
Sbjct: 311 KSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALS 370

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           AC +     + LK   +     G+         +V + G+   +  A  + + MP +   
Sbjct: 371 ACYNL----ETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP-DRDE 425

Query: 632 IIWVALLNG 640
           + W AL+ G
Sbjct: 426 VTWNALIGG 434



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MYS+ G I+ A+ VFD + +RN  SW +LM+G+   G   KA   F  M + G+ P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
              L+ AC  SG + +G     +   + G++        ++   G    + E V+++   
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAE-VDMVFKE 119

Query: 626 PMEPTPIIWVALL-----NGC 641
             EP  + W +L+     NGC
Sbjct: 120 IEEPNIVSWTSLMVGYAYNGC 140


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/770 (36%), Positives = 420/770 (54%), Gaps = 39/770 (5%)

Query: 72  HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
           HLI  Y    +   A  + + +      VF W  +I    +    D A  +F QM     
Sbjct: 44  HLIQMYAQCGSVPEAQQVFEILERK--DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDV 101

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            P + T+  +L AC    S + G  +H  I   GF+ +VFV  AL+ MY +C ++  A  
Sbjct: 102 MPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWD 161

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
            F  +      D+VSW  ++AA  Q         L+ RM  D  V  + ++L    +A  
Sbjct: 162 SFKRLEHR---DVVSWTAMIAACVQHDQFALARWLYRRMQLD-GVVPNKITLYTVFNAYG 217

Query: 252 SLGTWSRGK------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                S GK        G+ME            DV   N+ V  +   G   DA  LF+ 
Sbjct: 218 DPNYLSEGKFVYGLVSSGVME-----------SDVRVMNSAVNMFGNAGLLGDARRLFED 266

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M    V  +VVTW+ VI  Y Q  +  EA+ +F ++Q  G++ N +T V +L+   S+ +
Sbjct: 267 M----VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTS 322

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK  H       L  +  +  D +V  AL+ +Y +C++   A  +F  +  K  DV 
Sbjct: 323 LAKGKVIH------ELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSK--DVI 374

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           TWTVM  +Y+QNG   +AL LF +M  + +  +P + TL   L  CA LAAL+ GRQIH+
Sbjct: 375 TWTVMCVAYAQNGFRKEALQLFQEMQLEGR--RPTSATLVAVLDTCAHLAALQKGRQIHS 432

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           +++ N++ M +  V   LI+MY + G +  A  VF+ + +R+++ W S++  Y  HG  D
Sbjct: 433 HIIENRFRMEM-VVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYD 491

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +    F+QM+ +G+  D V+F+ +L A SHSG V  G +YF +M ++F I+   E Y C+
Sbjct: 492 ETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCV 551

Query: 606 VDLLGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           VDLLGRA R+ EAV+++  +    P  I+W+ LL  CR H   +  + AA ++LE +   
Sbjct: 552 VDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSH 611

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
            G+Y +LSN+YA AG W  V R+R LM+  GVKK PG S ++       F  GDR+HP+ 
Sbjct: 612 SGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRR 671

Query: 725 QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
             IY  L  L   ++A GY+P T   LHDV+DE K D+LF HSE+LA+A+G+++T PGTP
Sbjct: 672 HPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTP 731

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +R+ KNLR+C DCH+A  +IS +   EI++RD++RFH+FK+G C+CK YW
Sbjct: 732 LRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 242/514 (47%), Gaps = 28/514 (5%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD   F  +L+ C    +   G  VH  +   GF+ N  VC  L+ MYA+C ++  A+Q+
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F+ + +    D+ +W  ++  Y Q GD +  L +F +M  +  V    V+ V  L+ACAS
Sbjct: 62  FEILERK---DVFAWTRMIGIYCQQGDYDRALGMFYQMQEE-DVMPTKVTYVAILNACAS 117

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
             +   G     ME   ++ ++    DV    A++  Y++ GS   A+  FK++      
Sbjct: 118 TESLKDG-----MEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR--- 169

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            +VV+W+A+IA   Q      A  ++R+MQ  G+ PN +TL ++ +       L  GK  
Sbjct: 170 -DVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFV 228

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           +       L   G    D+ V+N+ ++M+     +  AR +F+ +   +RDV TW ++I 
Sbjct: 229 YG------LVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMV--DRDVVTWNIVIT 280

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y QN    +A+ LF ++ QQD  VK N  T    L     L +L  G+ IH  V    Y
Sbjct: 281 LYVQNENFGEAVRLFGRL-QQDG-VKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGY 338

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +     VA  L+ +Y R      A  +F ++  ++V++WT +   Y  +G   +A   F 
Sbjct: 339 DR-DAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ 397

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS-MSKEFGISARAEHYACIVDLLGR 611
           +M+ EG  P   T + +L  C+H   + +G +     +   F +    E    ++++ G+
Sbjct: 398 EMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGK 455

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
             ++ EA+ + E M      ++W ++L     H 
Sbjct: 456 CGKMAEAMSVFEKMAKRDI-LVWNSMLGAYAQHG 488



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KP+       L  C+    +  GR++H +V    +E     V   LI MY++ G +  A+
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQ-NNLVCGHLIQMYAQCGSVPEAQ 59

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VF+ L++++V +WT ++  Y   G  D+A   F QM++E + P  VT++ +L AC+ + 
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 578 MVDQGLK 584
            +  G++
Sbjct: 120 SLKDGME 126


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/769 (35%), Positives = 420/769 (54%), Gaps = 103/769 (13%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP----------GIC--- 202
           +VH  I + GF  +  + N L+ +Y +   L YARQLFDE+ +P          G C   
Sbjct: 35  AVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASG 94

Query: 203 -----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD------ 239
                            D V +N ++  ++ + D    + LF +M  +     D      
Sbjct: 95  DIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASV 154

Query: 240 --GVSLV------------NALSACASLGT---------WSR-GKQCGMMEEAKKVFERM 275
             G++LV             AL + A   T         +SR      ++  A+KVF+ +
Sbjct: 155 LAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDI 214

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             KD  SW  M+TGY + G F+    L K M  EN+KL  V ++A+I+GY   G   EAL
Sbjct: 215 PEKDERSWTTMMTGYVKNGCFDLGKELLKGM-DENMKL--VAYNAMISGYVNCGLYQEAL 271

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           ++ R+M   G+E +  T  S++  CA+   L LGK+ H Y ++R    D S   D    N
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE---DFSFHFD----N 324

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVAT 426
           +L+ +Y KC   + AR +F+ +  K+                             +++ +
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W +MI   ++NG   + L LF  M ++    +P  +  S A+ +CA L A   G+Q HA 
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREG--FEPCDYAFSGAIKSCAVLGAYCNGQQFHAQ 442

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           +++  ++  +    N LI MY++ G ++ A+ VF  +   + VSW +L+   G HG G +
Sbjct: 443 LVKIGFDSSLS-AGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVE 501

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   +++M K+G+ PD +TFL +L ACSH+G+VDQG KYF+SM   + I   A+HYA ++
Sbjct: 502 AVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLI 561

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DLL R+ +  EA  +IE +P +PT  IW ALL+GCR+H N+ELG +AA++L  L  E DG
Sbjct: 562 DLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDG 621

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
           +Y LLSN+YA  G+W++VAR+R LM+  GVKK   CSW++ +    TF V D +HP+++ 
Sbjct: 622 TYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEA 681

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +Y+ L  L + ++ +GYVP TSF LHDV+ D  K D+L  HSEK+A+A+G++   PGT I
Sbjct: 682 VYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTI 741

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RI KNLR CGDCH+   F+S ++  +IILRD  RFHHF+ G C+C  +W
Sbjct: 742 RIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 150/571 (26%), Positives = 256/571 (44%), Gaps = 92/571 (16%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +++ Y +    + A S+ +    S      +NA+I          +A  LF +M   G+ 
Sbjct: 86  MVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 133 PDEYTFPFVLKACG-ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT----LS 187
           PD++T+  VL      +   +     HA    SG      V NAL+++Y+RC +    L 
Sbjct: 146 PDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLH 205

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK------------ 235
            AR++FD++ +    D  SW T++  Y ++G  + G  L   M  ++K            
Sbjct: 206 SARKVFDDIPEK---DERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYV 262

Query: 236 -------------------VQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
                              ++ D  +  + + ACA+      GKQ               
Sbjct: 263 NCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHF 322

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                     CG   EA+ +FE+M  KD+VSWNA+++GY   G   +A  +FK+M+++  
Sbjct: 323 DNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK-- 380

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             N+++W  +I+G A+ G G E L +F  M+  G EP        +  CA +GA   G++
Sbjct: 381 --NILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ 438

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   +K  +  D S    L   NALI MYAKC  V+ A+ +F  +     D  +W  +I
Sbjct: 439 FHAQLVK--IGFDSS----LSAGNALITMYAKCGVVEEAQQVFRTMPC--LDSVSWNALI 490

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            +  Q+G   +A+ ++ +M +  K ++P+  T    L AC+    +  GR+   Y    +
Sbjct: 491 AALGQHGHGVEAVDVYEEMLK--KGIRPDRITFLTVLTACSHAGLVDQGRK---YFNSME 545

Query: 492 YEMLIPFVANC---LIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKA 547
               IP  A+    LID+  RSG    A  + ++L  +     W +L++G  +HG  +  
Sbjct: 546 TVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELG 605

Query: 548 HWAFDQMRKEGLAP--DGVTFLVL--LYACS 574
             A D++   GL P  DG T+++L  +YA +
Sbjct: 606 IIAADKLF--GLIPEHDG-TYMLLSNMYAAT 633



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 163/383 (42%), Gaps = 47/383 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           L  +C    +   I +++  ++L  V  + L++ YVS      A  + + +     ++  
Sbjct: 329 LYYKCGKFNEARAIFEKMPAKDL--VSWNALLSGYVSSGHIGEAKLIFKEMKEK--NILS 384

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I         +   +LF  M R G+ P +Y F   +K+C  L +   G   HA + 
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLV 444

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFDS++   NAL+ MYA+C  +  A+Q+F  M  P + D VSWN ++AA  Q G    
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTM--PCL-DSVSWNALIAALGQHGHGVE 501

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + ++  M     ++ D ++ +  L+AC+           G++++ +K F  M+    + 
Sbjct: 502 AVDVYEEMLKK-GIRPDRITFLTVLTACS---------HAGLVDQGRKYFNSMETVYRIP 551

Query: 283 WNA-----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             A     ++    R G F +A ++ + +     K     W A+++G   R HG+  L +
Sbjct: 552 PGADHYARLIDLLCRSGKFSEAESIIESL---PFKPTAEIWEALLSGC--RVHGNMELGI 606

Query: 338 FRQMQFCGLEPNVVTLVSLLSG----------CASVGALL----LGKETHCYTIKRVLSV 383
               +  GL P       LLS            A V  L+    + KE  C  I+    V
Sbjct: 607 IAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQV 666

Query: 384 ------DGSHPDDLMVINALIDM 400
                 D SHP+   V   L D+
Sbjct: 667 HTFLVDDTSHPEAEAVYKYLQDL 689


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/734 (37%), Positives = 417/734 (56%), Gaps = 63/734 (8%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSG--FD----SNVFVCNALMAMYARCDTLSYAR 190
           T P ++  C    + +    +HA +  +G  FD    + +F   AL    +   +L YA 
Sbjct: 32  TVPILIDKCA---NKKHLKQLHAHMLRTGLFFDPPSATKLFTACAL----SSPSSLDYAC 84

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD++ +P   ++ +WNT++ A+A S     GL++F +M  + +   +  +    + A 
Sbjct: 85  KVFDQIPRP---NLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAA 141

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
             + +   G+    M     V +     D+   N+++  YS +G  + A+ +F K+    
Sbjct: 142 TEVSSLLAGQAIHGM-----VMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI---- 192

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           V+ ++V+W+++I+G+ Q G   EAL +F++M+     PN VT+V +LS CA    L  G+
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR 252

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------- 421
               Y  +  + ++      L++ NA++DMY KC S++ AR +FD +  K+         
Sbjct: 253 WACDYIERNGIDIN------LILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMID 306

Query: 422 --------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
                                D+  W  +I SY QNG   +ALA+F ++ Q +K  KPN 
Sbjct: 307 GYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFREL-QLNKNTKPNE 365

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            TL+  L ACA+L A+  G  IH Y+ + Q   L   +   LIDMYS+ G ++ A  VF 
Sbjct: 366 VTLASTLAACAQLGAMDLGGWIHVYI-KKQGIKLNFHITTSLIDMYSKCGHLEKALEVFY 424

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           ++++R+V  W++++ G  MHG G  A   F +M++  + P+ VTF  LL ACSHSG+VD+
Sbjct: 425 SVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDE 484

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G  +F+ M   +G+   ++HYAC+VD+LGRA  L+EAVELIE MP+ P+  +W ALL  C
Sbjct: 485 GRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGAC 544

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RI+ NVEL E+A +RLLE +S   G+Y LLSNIYA AG+W  V+R+R  MK +G++K PG
Sbjct: 545 RIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPG 604

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE-KG 760
           CS ++       F VGD +HP S +IY  L  +V RIK+ GYV   S  L  V++E  K 
Sbjct: 605 CSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKE 664

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             L  HSEKLA+AYG++   P  PIRI KNLR+CGDCHS    IS + N +I+LRD  RF
Sbjct: 665 HALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRF 724

Query: 821 HHFKEGSCTCKGYW 834
           HHF  G+C+C  YW
Sbjct: 725 HHFSGGNCSCMDYW 738



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 130/294 (44%), Gaps = 54/294 (18%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   V+   P+ A +LF +M      P+  T   VL AC +      G      I 
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIE 259

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------------------- 202
            +G D N+ + NA++ MY +C +L  AR+LFD+M +  I                     
Sbjct: 260 RNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARR 319

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   DI +WN ++++Y Q+G  +  L +F  +  +   + + V+L + L+ACA LG
Sbjct: 320 VFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLG 379

Query: 255 TWSRG--------------------------KQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
               G                           +CG +E+A +VF  ++ +DV  W+AM+ 
Sbjct: 380 AMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIA 439

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           G +  G    A  LF KM++  VK N VT++ ++   +  G   E    F QM+
Sbjct: 440 GLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMR 493


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/746 (36%), Positives = 408/746 (54%), Gaps = 36/746 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR---CGSSVHA 159
           WN+LI         + A   F  M+     P  +T   V  AC   P       G  VHA
Sbjct: 163 WNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHA 222

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G + N F+ N L+AMY +   L+ ++ L    F+    D+V+WNT++++  Q+  
Sbjct: 223 YGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGS-FEGR--DLVTWNTVLSSLCQNEQ 278

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L     M  +  V+ DG ++ + L AC+ L     GK+           +    ++
Sbjct: 279 FLEALEYLREMVLE-GVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLD----EN 333

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               +A+V  Y           +F  M    + L    W+A+I GYAQ  +  EAL +F 
Sbjct: 334 SFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGL----WNAMITGYAQNEYDEEALLLFI 389

Query: 340 QMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +M+   GL  N  T+  ++  C   GA    +  H + +KR L        D  V NAL+
Sbjct: 390 EMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLD------RDRFVQNALM 443

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-- 456
           DMY++   +D+A+ +F  +  ++RD+ TW  +I  Y  +    DAL +  +M   ++   
Sbjct: 444 DMYSRLGKIDIAKRIFGKM--EDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKAS 501

Query: 457 -------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
                  +KPN+ TL   L +CA L+AL  G++IHAY ++N     +  V + L+DMY++
Sbjct: 502 ERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAK 560

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G +  +R VFD +  RNV++W  ++  YGMHG    A      M  +G+ P+ VTF+ +
Sbjct: 561 CGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISV 620

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME- 628
             ACSHSGMV++GLK F +M K++G+   ++HYAC+VDLLGRA R+ EA +LI  +P   
Sbjct: 621 FAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNF 680

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
                W +LL  CRIH N+E+GE+AA  L++LE      Y LL+NIY++AG W     +R
Sbjct: 681 DKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVR 740

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
             MK  GV+K PGCSW++  +    F  GD +HPQS+K+   L  L +R++  GY+P TS
Sbjct: 741 RNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTS 800

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
             LH+V+++EK  LL  HSEKLA+A+GIL T+PGT IR+ KNLR+C DCH A  FIS ++
Sbjct: 801 CVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVV 860

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
           + EIILRD  RFHHFK G+C+C  YW
Sbjct: 861 DREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 161/612 (26%), Positives = 282/612 (46%), Gaps = 48/612 (7%)

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
           A   + APS  +S  Q  SP      WW  L+R  VR  L   A   ++ M+  G  PD 
Sbjct: 41  ASTVYGAPSKFIS--QSHSPE-----WWIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDN 93

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARCDTLSYARQLFD 194
           + FP +LKA  +L     G  +HA +   G+   +V V N L+ +Y +C       ++FD
Sbjct: 94  FAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFD 153

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
            + +    + VSWN+++++       E  L  F R   D  V+    +LV+   AC++  
Sbjct: 154 RISER---NQVSWNSLISSLCSFEKWEMALEAF-RCMLDEDVEPSSFTLVSVALACSNFP 209

Query: 255 TWS---RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                  GKQ       K       +      N +V  Y ++G    +  L         
Sbjct: 210 MPEGLLMGKQVHAYGLRKGELNSFII------NTLVAMYGKMGKLASSKVLLGSFEGR-- 261

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             ++VTW+ V++   Q     EAL+  R+M   G+EP+  T+ S+L  C+ +  L  GKE
Sbjct: 262 --DLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKE 319

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y +K     +GS  ++  V +AL+DMY  CK V     +FD +   +R +  W  MI
Sbjct: 320 LHAYALK-----NGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMF--DRKIGLWNAMI 372

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QN    +AL LF +M +   L+  N+ T++  + AC R  A      IH +V++  
Sbjct: 373 TGYAQNEYDEEALLLFIEMEESAGLL-ANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRG 431

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY-----------GM 540
            +    FV N L+DMYSR G ID A+ +F  ++ R++V+W +++TGY            +
Sbjct: 432 LDR-DRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLML 490

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           H +      A ++  +  L P+ +T + +L +C+    + +G K   + + +  ++    
Sbjct: 491 HKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYAIKNNLATDVA 549

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
             + +VD+  +   L  + ++ + +P+    I W  ++    +H N +   +   R++ +
Sbjct: 550 VGSALVDMYAKCGCLQMSRKVFDQIPIRNV-ITWNVIVMAYGMHGNSQ-DAIDMLRMMMV 607

Query: 661 ESEKDGSYTLLS 672
           +  K    T +S
Sbjct: 608 QGVKPNEVTFIS 619


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 291/789 (36%), Positives = 426/789 (53%), Gaps = 64/789 (8%)

Query: 64  NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
            L H P S L+  Y S  +P   L  L R  P P   F  N+L+R    LR    A  LF
Sbjct: 54  TLDHAPASSLLLRYASLRSPPAHLLRLYRAFPRP-DRFLRNSLLRSLPTLR----ADLLF 108

Query: 124 LQMMRRGWHPDEYTFPF----VLKAC---GELPSSRCGSSV---HAVICSSGFDSNVFVC 173
                    PD ++F F    +  +C   G  P S   +++   HA+  +SGF ++ FV 
Sbjct: 109 PS-------PDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVA 161

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           +AL  +Y      + AR++FD +  P   D V WNT++A  + S   E     F RM G 
Sbjct: 162 SALAKLYFTLSRGNDARKVFDAVPSP---DTVLWNTLLAGLSGSEALEA----FVRMAGA 214

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAM 286
             V+ D  +L + L A A +   + G+       +CG+ +    V              +
Sbjct: 215 GSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVV------------TGL 262

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           ++ Y++ G  E A  LF +M   ++    VT++A+I+GY+  G    ++++F+++   GL
Sbjct: 263 ISLYAKCGDMECARHLFDRMEGPDL----VTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            P+  TLV+L+   +  G   L    H + +K  L  D + P    V  AL  +Y +   
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGL--DANAP----VSTALTTLYCRFND 372

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +D AR  FDA+  K  +  +W  MI  Y+QNG    A+ALF QM  Q   V+PN  T+S 
Sbjct: 373 MDSARRAFDAMPEKTME--SWNAMISGYAQNGLTEMAVALFQQM--QALNVRPNPLTISS 428

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
           AL ACA+L AL  G+ +H  +   + E+ + +V   LIDMY + G I  AR +FD++  +
Sbjct: 429 ALSACAQLGALSLGKWVHKIIANEKLELNV-YVMTALIDMYVKCGSIAEARCIFDSMDNK 487

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NVVSW  +++GYG+HG G +A   +  M    L P   TFL +LYACSH G+V +G   F
Sbjct: 488 NVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVF 547

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT-PIIWVALLNGCRIHA 645
            SM+ ++GI+   EH  C+VDLLGRA +L EA ELI   P     P IW ALL  C +H 
Sbjct: 548 RSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHK 607

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           + +L +LA+ +L ELE E  G Y LLSN+Y +  ++ + A +R   K   + K PGC+ +
Sbjct: 608 DGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLI 667

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +  +    F  GDR HPQS  IY  L  L  ++   GY P T  AL+DV++EEK  ++  
Sbjct: 668 EIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKV 727

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+G+L T PGT IRI KNLR+C DCH+A   IS +    I++RD++RFHHF++
Sbjct: 728 HSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRD 787

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 788 GVCSCGDYW 796


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/734 (35%), Positives = 419/734 (57%), Gaps = 19/734 (2%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNAL+      R     FR  L+ +     PDE T   VL  C  L     G +VH +  
Sbjct: 133 WNALMAAVADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAV 192

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SG+D+   V N L+ MYA+C  ++ A   F E       ++VSWN ++  YA++G+A  
Sbjct: 193 KSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGA 252

Query: 223 GLMLFARMTGDVK-VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
              L   M  + + V  D +++++ L  C+ L   ++ ++      A  V   + +   +
Sbjct: 253 AFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLREL----HAFVVRRGLHLTGDM 308

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA++  Y R G    A  +F  +  + V     +W+A+I  +AQ G    A+++FR+M
Sbjct: 309 VPNALIAAYGRCGCLLHACRVFDGICSKMVS----SWNALIGAHAQNGEASAAIELFREM 364

Query: 342 -QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
              CG +P+  ++ SLL  C ++  LL GK  H + ++  L  D        +  +L+ +
Sbjct: 365 TNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDS------FIRVSLLSV 418

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y +C    +ARV+FDA+  + +D  +W  MI  YSQNG   ++L LF +M  +     P+
Sbjct: 419 YIQCGRESLARVLFDAV--EEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPS 476

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
               + AL+AC+ L A+R G+++H + L+        F+++ +IDMYS+ G +D ARV F
Sbjct: 477 LLAATSALVACSELPAVRLGKEMHCFALKADL-CEDSFLSSSIIDMYSKCGSVDDARVFF 535

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D LK ++ VSWT ++TGY ++G G +A   +D+M +EG+ PDG T+L LL AC H+GM++
Sbjct: 536 DRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLE 595

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            GL +F  M     I A+ EHYAC++ +L RA R  +AV L+E MP EP   I  ++L+ 
Sbjct: 596 DGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSA 655

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           C +H  VELG+  A++LLELE  K   Y L SN+YA + +W ++ ++R +++  GV K P
Sbjct: 656 CHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEP 715

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW+       +F  G+ + P+  K+ ++   L ++I+A GY P T+  LH++++EEK 
Sbjct: 716 GCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKV 775

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           + L  HSEK A+A+G+L TA  T +R+ KN+R+C DCH+A   IS + + EI++RD  RF
Sbjct: 776 EALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRF 835

Query: 821 HHFKEGSCTCKGYW 834
           HHF++G C+C  YW
Sbjct: 836 HHFRDGLCSCGDYW 849



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 184/695 (26%), Positives = 289/695 (41%), Gaps = 135/695 (19%)

Query: 75  AAYVSHNAPSP--ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM--RRG 130
           AA   H AP P           P+  S+  WN L+    R     +A  +  +++    G
Sbjct: 3   AAVTVHLAPLPNHPPKQPPLPKPNAASLPQWNGLLADLSRAGRHADALAILPRLLAASDG 62

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYA 189
             PD +T P  LK+C        G  VHAV    G  D + FV N+L++MY RC  +  A
Sbjct: 63  VAPDRFTLPPALKSC----RGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDA 118

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV--KVQGDGVSLVNAL 247
            ++F+ M      ++VSWN ++AA A   D   GL LF     D+      D  +LV  L
Sbjct: 119 EKVFEGMAGR---NLVSWNALMAAVA---DPRRGLELFRDCLEDLGGTAAPDEATLVTVL 172

Query: 248 SACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKV---K 278
             CA+L     G+                          +CG M +A+  F        +
Sbjct: 173 PMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGR 232

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +VVSWN M+ GY+R G    AF L ++M                                
Sbjct: 233 NVVSWNVMLGGYARNGEAGAAFGLLREM-------------------------------- 260

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM+  G+  + +T++S+L  C+ +  L   +E H + ++R L + G      MV NALI
Sbjct: 261 -QMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGD-----MVPNALI 314

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             Y +C  +  A  +FD I  K   V++W  +IG+++QNG A+ A+ LF +M       K
Sbjct: 315 AAYGRCGCLLHACRVFDGICSKM--VSSWNALIGAHAQNGEASAAIELFREMTNACG-QK 371

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F++   L+AC  L  L  G+  H ++LRN  E    F+   L+ +Y + G    ARV
Sbjct: 372 PDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEK-DSFIRVSLLSVYIQCGRESLARV 430

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM--RKEGLAPDGVTFLVLLYACSH- 575
           +FD +++++ VSW +++ GY  +GL  ++   F +M  +K G  P  +     L ACS  
Sbjct: 431 LFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSEL 490

Query: 576 ----------------------------------SGMVDQGLKYFDSMSKEFGISARAEH 601
                                              G VD    +FD +  +  +S     
Sbjct: 491 PAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVS----- 545

Query: 602 YACIVDLLGRANRLDEAVELIEGM---PMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
           +  ++       R  EAV L + M    MEP    ++ LL  C     +E G      + 
Sbjct: 546 WTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMR 605

Query: 659 ELE--SEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
            L     K   Y  +  + + AGR+ D   +  +M
Sbjct: 606 NLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVM 640



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 122/279 (43%), Gaps = 17/279 (6%)

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  ++   S+ G   DALA+ P++      V P+ FTL  AL +C        GRQ+HA 
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
             +       PFV N L+ MY R G +D A  VF+ +  RN+VSW +LM        G +
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLE 148

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
                 +      APD  T + +L  C+     + G +    ++ + G  A       +V
Sbjct: 149 LFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETG-RAVHGLAVKSGWDAAPRVSNVLV 207

Query: 607 DLLGRANRL-DEAVELIEGMPMEPTPII-WVALLNGCRIHANVELGELAANRLLELESEK 664
           D+  +   + D     +E  P     ++ W  +L G     N E G  A   L E++ E+
Sbjct: 208 DMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGG--YARNGEAGA-AFGLLREMQMEE 264

Query: 665 DG----SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            G      T+LS +   +G   ++A++R L  H  V +R
Sbjct: 265 RGVPADEITMLSVLPVCSG-LPELAKLREL--HAFVVRR 300


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 291/838 (34%), Positives = 460/838 (54%), Gaps = 63/838 (7%)

Query: 32  TTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYV---SHNAPSPALS 88
           TTT   K +SL  + CK+L ++  +H  ++ + + ++  + LIAA V   +H + + AL+
Sbjct: 19  TTTQKPKNSSL--QTCKTLIELKQLHCNMLKKGVFNI--NKLIAACVQMGTHESLNYALN 74

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM-RRGWHPDEYTFPFVLKACGE 147
             +    +  S++  N LIR      L   A  ++L M+   G  PD +TFPF+L AC +
Sbjct: 75  AFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSK 134

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           + +   G  VH V+   G   ++FV N+L+  YA C  +   R++FDEM +    ++VSW
Sbjct: 135 IMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLER---NVVSW 191

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-CGMME 266
            +++  Y+    A+  + LF  M  +V V+ + V++V A+SACA L     GK+ C +M 
Sbjct: 192 TSLINGYSVVNMAKEAVCLFFEMV-EVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMT 250

Query: 267 EAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
           E       + VK + +  NA++  Y + G   D +A+ +++  E    N+V ++ +++ Y
Sbjct: 251 E-------LGVKSNTLVVNALLDMYMKCG---DMYAV-REIFDEFSDKNLVMYNTIMSNY 299

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            Q G   E L V  +M   G  P+ VT++S ++ CA +G L +GK +H Y  +  L    
Sbjct: 300 VQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLE--- 356

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
              D+  + NA+IDMY KC   + A  +FD+++  N+ V TW  +I    ++G    AL 
Sbjct: 357 -RLDN--ISNAIIDMYMKCGKREAACKVFDSMS--NKTVVTWNSLIAGLVRDGELELALR 411

Query: 446 LFPQMFQ-----------------------------QDKLVKPNAFTLSCALMACARLAA 476
           +F +M +                             Q++ +K +  T+     AC  L A
Sbjct: 412 IFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGA 471

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L   + I+ Y+ +N   + +  +   L+DM+SR GD   A  VF+N+++R+V +WT+ + 
Sbjct: 472 LDLAKWIYTYIEKNDIHIDMQ-LGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIR 530

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
              + G    A   FD+M K+ +  D   F+ LL A SH G VDQG + F +M K  G+S
Sbjct: 531 VKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVS 590

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
            +  HY C+VDLLGRA  L+EA +L++ MP++P  +IW + L  CR H NVE    A  +
Sbjct: 591 PQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEK 650

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           + +L  EK G + LLSNIYA+AG+W DVAR+R  MK  G +K  G S ++       F  
Sbjct: 651 ITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTS 710

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
           GD +H ++ +I  +L  +  RI  +GYVP T+  L DVD++EK  LL  HSEKLA+AYG+
Sbjct: 711 GDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGL 770

Query: 777 LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + T  G PIR+ KNLR+C DCHS    +S +   EI +RD+NR+H FKEG C+C+ +W
Sbjct: 771 INTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/716 (37%), Positives = 399/716 (55%), Gaps = 26/716 (3%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            + F  M+      D+ TF  +L    ++ S   G  VH +    G D  + V N+L+ M
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y +     +AR +FD M +    D++SWN+++A  AQ+G     + LF ++     ++ D
Sbjct: 360 YCKLRKFGFARTVFDNMSER---DLISWNSVIAGIAQNGLEVEAVCLFMQLL-RCGLKPD 415

Query: 240 GVSLVNALSACASLGT-WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
             ++ + L A +SL    S  KQ  +   A K+     V D     A++  YSR    ++
Sbjct: 416 QYTMTSVLKAASSLPEGLSLSKQVHV--HAIKI---NNVSDSFVSTALIDAYSRNRCMKE 470

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF     E    ++V W+A++AGY Q   GH+ L +F  M   G   +  TL ++  
Sbjct: 471 AEILF-----ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFK 525

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C  + A+  GK+ H Y IK        +  DL V + ++DMY KC  +  A+  FD+I 
Sbjct: 526 TCGFLFAINQGKQVHAYAIK------SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI- 578

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
           P   DVA WT MI    +NG    A  +F QM     L  P+ FT++    A + L AL 
Sbjct: 579 PVPDDVA-WTTMISGCIENGEEERAFHVFSQMRLMGVL--PDEFTIATLAKASSCLTALE 635

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            GRQIHA  L+       PFV   L+DMY++ G ID A  +F  ++  N+ +W +++ G 
Sbjct: 636 QGRQIHANALKLNCTN-DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGL 694

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
             HG G +    F QM+  G+ PD VTF+ +L ACSHSG+V +  K+  SM  ++GI   
Sbjct: 695 AQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE 754

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHY+C+ D LGRA  + +A  LIE M ME +  ++  LL  CR+  + E G+  A +LL
Sbjct: 755 IEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLL 814

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           ELE     +Y LLSN+YA A +W ++   R++MK   VKK PG SW++ K     F V D
Sbjct: 815 ELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDD 874

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
           R++ Q++ IY  +  +++ IK  GYVP+T F L DV++EEK   L+ HSEKLA+A+G+L+
Sbjct: 875 RSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLS 934

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           T P TPIR+ KNLR+CGDCH+A+ +I+ + N EI+LRD+NRFH FK+G C+C  YW
Sbjct: 935 TPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 153/566 (27%), Positives = 251/566 (44%), Gaps = 93/566 (16%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G   HA I +   +   F+ N L++MY++C +L+YAR++FD+M      D+VSWN+I+AA
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDR---DLVSWNSILAA 114

Query: 214 YAQSGDA-----EGGLMLFARMTGDVKVQGDGVSLVNALSACASLG-TWS----RGKQC- 262
           YAQS +      +   +LF  +  DV V    ++L   L  C   G  W+     G  C 
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDV-VYTSRMTLSPMLKLCLHSGYVWASESFHGYACK 173

Query: 263 --------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
                               G ++E K +FE M  +DVV WN M+  Y  +G  E+A  L
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233

Query: 303 FKKMRQENVKLNVVTWS--AVIAG--------------------------------YAQR 328
                   +  N +T    A I+G                                Y   
Sbjct: 234 SSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHS 293

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G     L  F  M    +E + VT + +L+    V +L LG++ HC  +K  L       
Sbjct: 294 GQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL------- 346

Query: 389 DDLM--VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            DLM  V N+LI+MY K +    AR +FD ++   RD+ +W  +I   +QNG   +A+ L
Sbjct: 347 -DLMLTVSNSLINMYCKLRKFGFARTVFDNMS--ERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           F Q+ +    +KP+ +T++  L A + L   L   +Q+H + ++    +   FV+  LID
Sbjct: 404 FMQLLRCG--LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKIN-NVSDSFVSTALID 460

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
            YSR+  +  A ++F+     ++V+W ++M GY     G K    F  M K+G   D  T
Sbjct: 461 AYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFT 519

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
              +   C     ++QG K   + + + G        + I+D+  +   +  A    + +
Sbjct: 520 LATVFKTCGFLFAINQG-KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578

Query: 626 PMEPTPIIWVALLNGCRIHANVELGE 651
           P+ P  + W  +++GC     +E GE
Sbjct: 579 PV-PDDVAWTTMISGC-----IENGE 598



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 191/455 (41%), Gaps = 91/455 (20%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS---VHA 159
           WN++I    +  L   A  LF+Q++R G  PD+YT   VLKA   LP     S    VHA
Sbjct: 384 WNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHA 443

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +  ++  DS  FV  AL+  Y+R   +  A  LF+        D+V+WN ++A Y QS D
Sbjct: 444 IKINNVSDS--FVSTALIDAYSRNRCMKEAEILFER----HNFDLVAWNAMMAGYTQSHD 497

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
               L LFA M    + + D  +L      C  L   ++GKQ                  
Sbjct: 498 GHKTLKLFALMHKQGE-RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS 556

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG M  A+  F+ + V D V+W  M++G    G  E AF +F +MR      
Sbjct: 557 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR------ 610

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                          G+ P+  T+ +L    + + AL  G++ H
Sbjct: 611 -----------------------------LMGVLPDEFTIATLAKASSCLTALEQGRQIH 641

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K       +  +D  V  +L+DMYAKC S+D A  +F  I   N  +  W  M+  
Sbjct: 642 ANALKL------NCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN--ITAWNAMLVG 693

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA----ALRFGRQIHA-YVL 488
            +Q+G   + L LF QM  +   +KP+  T    L AC+       A +  R +H  Y +
Sbjct: 694 LAQHGEGKETLQLFKQM--KSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGI 751

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           + + E       +CL D   R+G +  A  + +++
Sbjct: 752 KPEIEHY-----SCLADALGRAGLVKQAENLIESM 781



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 32  TTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH-VPPSHLIAAYVSHNAPSPALSLL 90
           T T  +K  S L        QV++    I + N++     + LI AY  +     A  L 
Sbjct: 418 TMTSVLKAASSLPEGLSLSKQVHV--HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF 475

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
           +R     F +  WNA++    +        +LF  M ++G   D++T   V K CG L +
Sbjct: 476 ER---HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFA 532

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
              G  VHA    SG+D +++V + ++ MY +C  +S A+  FD +  P   D V+W T+
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP---DDVAWTTM 589

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
           ++   ++G+ E    +F++M   + V  D  ++     A + L    +G+Q         
Sbjct: 590 ISGCIENGEEERAFHVFSQMRL-MGVLPDEFTIATLAKASSCLTALEQGRQI-----HAN 643

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
             +     D     ++V  Y++ GS +DA+ LFK++      +N+  W+A++ G AQ G 
Sbjct: 644 ALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM----MNITAWNAMLVGLAQHGE 699

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           G E L +F+QM+  G++P+ VT + +LS C+  G
Sbjct: 700 GKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 16/209 (7%)

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L+LGK TH     R+L+ +  +P+  + IN LI MY+KC S+  AR +FD +   +RD+ 
Sbjct: 55  LMLGKCTHA----RILTFE-ENPERFL-INNLISMYSKCGSLTYARRVFDKMP--DRDLV 106

Query: 426 TWTVMIGSYSQNG-----GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           +W  ++ +Y+Q+          A  LF ++ +QD +V  +  TLS  L  C     +   
Sbjct: 107 SWNSILAAYAQSSECVVENIQQAFLLF-RILRQD-VVYTSRMTLSPMLKLCLHSGYVWAS 164

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
              H Y  +   +    FVA  L+++Y + G +   +V+F+ +  R+VV W  ++  Y  
Sbjct: 165 ESFHGYACKIGLDG-DEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G  ++A          GL P+ +T  +L
Sbjct: 224 MGFKEEAIDLSSAFHSSGLNPNEITLRLL 252



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  G+  HA +L  + E    F+ N LI MYS+ G +  AR VFD +  R++VSW S++ 
Sbjct: 55  LMLGKCTHARILTFE-ENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILA 113

Query: 537 GYGMHGLG-----DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            Y            +A   F  +R++ +    +T   +L  C HSG V    + F   + 
Sbjct: 114 AYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYAC 172

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           + G+         +V++  +  ++ E   L E MP     ++W  +L  
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDV-VLWNLMLKA 220


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/551 (42%), Positives = 355/551 (64%), Gaps = 15/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y   G+ EDA  LF  M     K +  +WS ++ GYA+ G+      +FR++  
Sbjct: 89  NKLLYMYVERGALEDAQELFDGMS----KRHPYSWSVIVGGYAKVGNFFSCFWMFRELLR 144

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G   +  +   ++  C  +  L  G+  HC T+K    +D  H     V   L+DMYA+
Sbjct: 145 SGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLK--CGLDYGH----FVCATLVDMYAR 198

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           CK V+ A  +F  +    RD+ATWTVMIG+ +++G   ++L  F +M  Q   + P+   
Sbjct: 199 CKVVEDAHQIF--VKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQG--IVPDKVA 254

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L   + ACA+L A+   + IHAY+    Y + +  +   +IDMY++ G +++AR +FD +
Sbjct: 255 LVTVVYACAKLGAMNKAKAIHAYINGTGYSLDV-ILGTAMIDMYAKCGSVESARWIFDRM 313

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           + RNV++W++++  YG HG G+KA   F  M + G+ P+ +TF+ LLYACSH+G++++G 
Sbjct: 314 QVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQ 373

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           ++F SM  E+G++   +HY C+VDLLGRA RLDEA+E+IEGMP+E   ++W ALL  CRI
Sbjct: 374 RFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRI 433

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H +++L E  A  LL+L+S+K G Y LLSNIYANAG+W+D+A+ R LM   G++K PG +
Sbjct: 434 HRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRT 493

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++  E    F VGD+THP+S +IY++L  L ++++  GY P T+  L+DVD+E K  LL
Sbjct: 494 WIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLL 553

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
           + HSEKLA+A+G+L    G PIRITKNLR+CGDCH+   F+S+I    II+RD+ RFHHF
Sbjct: 554 YSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHF 613

Query: 824 KEGSCTCKGYW 834
           KEG C+C+ YW
Sbjct: 614 KEGVCSCRDYW 624



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 193/399 (48%), Gaps = 37/399 (9%)

Query: 44  LRQCKSLTQVYLIHQQIIV----QNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS-PF 98
           L  C++L QV  +H QI      +NL     + L+  YV   A   A  L   +S   P+
Sbjct: 60  LLSCRNLFQVRQVHAQIATNGAFRNLA--VANKLLYMYVERGALEDAQELFDGMSKRHPY 117

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S   W+ ++    ++    + F +F +++R G   D+Y+ P V++AC +L   +CG  +H
Sbjct: 118 S---WSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIH 174

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +    G D   FVC  L+ MYARC  +  A Q+F +M++    D+ +W  ++ A A+SG
Sbjct: 175 CITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKR---DLATWTVMIGALAESG 231

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L+ F RM     V  D V+LV  + ACA LG          M +AK +   +   
Sbjct: 232 VPVESLVFFDRMRNQGIVP-DKVALVTVVYACAKLGA---------MNKAKAIHAYINGT 281

Query: 279 ----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV+   AM+  Y++ GS E A  +F +M+  N    V+TWSA+IA Y   G G +A
Sbjct: 282 GYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRN----VITWSAMIAAYGYHGQGEKA 337

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L++F  M   G+ PN +T VSLL  C+  G +  G+         +    G  P D+   
Sbjct: 338 LELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQR----FFSSMWDEYGVTP-DVKHY 392

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             ++D+  +   +D A  M + + P  +D   W  ++G+
Sbjct: 393 TCMVDLLGRAGRLDEALEMIEGM-PVEKDEVLWGALLGA 430



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           +L V N L+ MY +  +++ A+ +FD ++   R   +W+V++G Y++ G       +F +
Sbjct: 84  NLAVANKLLYMYVERGALEDAQELFDGMS--KRHPYSWSVIVGGYAKVGNFFSCFWMFRE 141

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           + +    +  + ++    + AC  L  L+ GR IH   L+   +    FV   L+DMY+R
Sbjct: 142 LLRSGAPL--DDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLD-YGHFVCATLVDMYAR 198

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
              ++ A  +F  + +R++ +WT ++      G+  ++   FD+MR +G+ PD V  + +
Sbjct: 199 CKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTV 258

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           +YAC+  G +++  K   +     G S        ++D+  +   ++ A  + + M +  
Sbjct: 259 VYACAKLGAMNKA-KAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRN 317

Query: 630 TPIIWVALLNGCRIHANVE 648
             I W A++     H   E
Sbjct: 318 V-ITWSAMIAAYGYHGQGE 335



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 11/162 (6%)

Query: 467 ALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
           +L++C  L  +R   Q+HA +  N  +  L   VAN L+ MY   G ++ A+ +FD + +
Sbjct: 59  SLLSCRNLFQVR---QVHAQIATNGAFRNLA--VANKLLYMYVERGALEDAQELFDGMSK 113

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R+  SW+ ++ GY   G      W F ++ + G   D  +  V++ AC     +  G + 
Sbjct: 114 RHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCG-RL 172

Query: 586 FDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGM 625
              ++ + G+     H+ C  +VD+  R   +++A ++   M
Sbjct: 173 IHCITLKCGLD--YGHFVCATLVDMYARCKVVEDAHQIFVKM 212


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 282/819 (34%), Positives = 437/819 (53%), Gaps = 35/819 (4%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNL---THVPPSHLIA 75
           L++ +   +V  TP   + S +L  C   K   Q  +IH Q+  Q     T V  + LIA
Sbjct: 131 LYSQMHWTAVIPTP--YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA-LIA 187

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
            Y+   +   A  +   +       F  N LI    +    + A ++F +M   G  PD 
Sbjct: 188 LYLGFGSFKLAERVFCDMLFCDRVTF--NTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
            T   +L AC  +   + G  +H+ +  +G   +     +L+ +Y +C  +  A  +F+ 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
             +    ++V WN ++ AY Q  D      +F +M     +  +  +    L  C   G 
Sbjct: 306 GDRT---NVVLWNLMLVAYGQISDLAKSFEIFGQMQA-TGIHPNQFTYPCILRTCTCTGQ 361

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
              G+Q   +   K  FE     D+     ++  YS+ G  + A  + + +     K +V
Sbjct: 362 IELGEQIHSLS-IKNGFE----SDMYVSGVLIDMYSKYGCLDKARKILEMLE----KRDV 412

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+++IAGY Q     EAL  F++MQ CG+ P+ + L S  S CA + A+  G + H  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA- 471

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
              RV  V G +  D+ + N L+++YA+C   + A  +F  I  +++D  TW  +I  + 
Sbjct: 472 ---RVY-VSG-YAADISIWNTLVNLYARCGRSEEAFSLFREI--EHKDEITWNGLISGFG 524

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           Q+     AL +F +M Q     K N FT   A+ A A LA ++ G+Q+H   ++  +   
Sbjct: 525 QSRLYKQALMVFMKMGQAG--AKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSE 582

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
              VAN LI +Y + G I+ A+++F  +  RN VSW +++T    HG G +A   FDQM+
Sbjct: 583 TE-VANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMK 641

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
           +EGL P+ VTF+ +L ACSH G+V++GL YF SMS  +G++   +HYAC+VD+LGRA +L
Sbjct: 642 QEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQL 701

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           D A   ++ MP+    +IW  LL+ C++H N+E+GELAA  LLELE     SY LLSN Y
Sbjct: 702 DRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAY 761

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A  G+W +  ++R +MK  G++K PG SW++ K     FFVGDR HP S +IY+ L+ L 
Sbjct: 762 AVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELN 821

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
            R+  +GY  +     H+ + E+K    F HSEKLA+A+G++T  P  P+R+ KNLR+C 
Sbjct: 822 DRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCD 881

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCHS +   S +   EI+LRD  RFHHF  GSC+C  YW
Sbjct: 882 DCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 265/544 (48%), Gaps = 28/544 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +  L   AFRL+ QM      P  Y    VL AC +      G  +HA + 
Sbjct: 112 WVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVY 171

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              F S  FV NAL+A+Y    +   A ++F +M     CD V++NT+++ +AQ G  E 
Sbjct: 172 KQAFCSETFVGNALIALYLGFGSFKLAERVFCDML---FCDRVTFNTLISGHAQCGHGEC 228

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            L +F  M     ++ D V++ + L+ACAS+G   +GKQ    + +A   F      D +
Sbjct: 229 ALQIFDEMQLS-GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF------DYI 281

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           +  +++  Y + G  E A  +F        + NVV W+ ++  Y Q     ++ ++F QM
Sbjct: 282 TEGSLLDLYVKCGDIETAHDIFNL----GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           Q  G+ PN  T   +L  C   G + LG++ H       LS+      D+ V   LIDMY
Sbjct: 338 QATGIHPNQFTYPCILRTCTCTGQIELGEQIHS------LSIKNGFESDMYVSGVLIDMY 391

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           +K   +D AR + + +  + RDV +WT MI  Y Q+    +ALA F +M  QD  V P+ 
Sbjct: 392 SKYGCLDKARKILEML--EKRDVVSWTSMIAGYVQHDFCEEALATFKEM--QDCGVWPDN 447

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
             L+ A  ACA + A+R G QIHA V  + Y   I  + N L+++Y+R G  + A  +F 
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS-IWNTLVNLYARCGRSEEAFSLFR 506

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            ++ ++ ++W  L++G+G   L  +A   F +M + G   +  TF+  + A ++   + Q
Sbjct: 507 EIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQ 566

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G K     + + G ++  E    ++ L G+   +++A  +   M +    + W  ++  C
Sbjct: 567 G-KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSC 624

Query: 642 RIHA 645
             H 
Sbjct: 625 SQHG 628



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/484 (31%), Positives = 247/484 (51%), Gaps = 26/484 (5%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA     G  ++  + N L+ +YA+   +  ARQ+F E+      D VSW  +++ YAQ
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSR---DHVSWVAMLSGYAQ 121

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           SG  +    L+++M     +    V L + LSAC     +++G+         +V+++  
Sbjct: 122 SGLGKEAFRLYSQMHWTAVIPTPYV-LSSVLSACTKGKLFAQGRMI-----HAQVYKQAF 175

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             +    NA++  Y   GSF+ A  +F  M    +  + VT++ +I+G+AQ GHG  AL 
Sbjct: 176 CSETFVGNALIALYLGFGSFKLAERVFCDM----LFCDRVTFNTLISGHAQCGHGECALQ 231

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F +MQ  GL P+ VT+ SLL+ CASVG L  GK+ H Y +K  +S       D +   +
Sbjct: 232 IFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF------DYITEGS 285

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+D+Y KC  ++ A  +F+     N  V  W +M+ +Y Q      +  +F QM  Q   
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTN--VVLWNLMLVAYGQISDLAKSFEIFGQM--QATG 341

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           + PN FT  C L  C     +  G QIH+  ++N +E  + +V+  LIDMYS+ G +D A
Sbjct: 342 IHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM-YVSGVLIDMYSKYGCLDKA 400

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R + + L++R+VVSWTS++ GY  H   ++A   F +M+  G+ PD +       AC+  
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             + QGL+    +    G +A    +  +V+L  R  R +EA  L   +      I W  
Sbjct: 461 KAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNG 518

Query: 637 LLNG 640
           L++G
Sbjct: 519 LISG 522


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 282/819 (34%), Positives = 436/819 (53%), Gaps = 35/819 (4%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNL---THVPPSHLIA 75
           L++ +   +V  TP   + S +L  C   K   Q  +IH Q+  Q     T V  + LIA
Sbjct: 131 LYSQMHWTAVIPTP--YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA-LIA 187

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
            Y+   +   A  +   +       F  N LI    +    + A ++F +M   G  PD 
Sbjct: 188 LYLGFGSFKLAERVFCDMLFCDRVTF--NTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
            T   +L AC  +   + G  +H+ +  +G   +     +L+ +Y +C  +  A  +F+ 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
             +    ++V WN ++ AY Q  D      +F +M     +  +  +    L  C   G 
Sbjct: 306 GDRT---NVVLWNLMLVAYGQISDLAKSFEIFGQMQA-TGIHPNKFTYPCILRTCTCTGQ 361

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
              G+Q   +   K  FE     D+     ++  YS+    + A  + + +     K +V
Sbjct: 362 IELGEQIHSLS-IKNGFE----SDMYVSGVLIDMYSKYRCLDKARKILEMLE----KRDV 412

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+++IAGY Q     EAL  F++MQ CG+ P+ + L S  S CA + A+  G + H  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA- 471

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
              RV  V G +  D+ + N L+++YA+C   + A  +F  I   ++D  TW  +I  + 
Sbjct: 472 ---RVY-VSG-YAADISIWNTLVNLYARCGRSEEAFSLFREI--DHKDEITWNGLISGFG 524

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           Q+     AL +F +M Q     K N FT   A+ A A LA ++ G+Q+H   ++  +   
Sbjct: 525 QSRLYEQALMVFMKMSQAG--AKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSE 582

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
              VAN LI +Y + G I+ A+++F  +  RN VSW +++T    HG G +A   FDQM+
Sbjct: 583 TE-VANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMK 641

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
           +EGL P+ VTF+ +L ACSH G+V++GL YF SMS  +G++   +HYAC+VD+LGRA +L
Sbjct: 642 QEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQL 701

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           D A   ++ MP+    +IW  LL+ C++H N+E+GELAA  LLELE     SY LLSN Y
Sbjct: 702 DRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAY 761

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A  G+W +  ++R +MK  G++K PG SW++ K     FFVGDR HP S +IY+ L+ L 
Sbjct: 762 AVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELN 821

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
            R+  +GY  +     H+ + E+K    F HSEKLA+A+G++T  P  P+R+ KNLR+C 
Sbjct: 822 DRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCD 881

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCHS + F S +   EI+LRD  RFHHF  GSC+C  YW
Sbjct: 882 DCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 266/544 (48%), Gaps = 28/544 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +  L   AFRL+ QM      P  Y    VL AC +      G  +HA + 
Sbjct: 112 WVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVY 171

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              F S  FV NAL+A+Y    +   A ++F +M     CD V++NT+++ +AQ G  E 
Sbjct: 172 KQAFCSETFVGNALIALYLGFGSFKLAERVFCDML---FCDRVTFNTLISGHAQCGHGEC 228

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            L +F  M     ++ D V++ + L+ACAS+G   +GKQ    + +A   F      D +
Sbjct: 229 ALQIFDEMQLS-GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF------DYI 281

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           +  +++  Y + G  E A  +F        + NVV W+ ++  Y Q     ++ ++F QM
Sbjct: 282 TEGSLLDLYVKCGDIETAHDIFNL----GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           Q  G+ PN  T   +L  C   G + LG++ H       LS+      D+ V   LIDMY
Sbjct: 338 QATGIHPNKFTYPCILRTCTCTGQIELGEQIHS------LSIKNGFESDMYVSGVLIDMY 391

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           +K + +D AR + + +  + RDV +WT MI  Y Q+    +ALA F +M  QD  V P+ 
Sbjct: 392 SKYRCLDKARKILEML--EKRDVVSWTSMIAGYVQHDFCEEALATFKEM--QDCGVWPDN 447

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
             L+ A  ACA + A+R G QIHA V  + Y   I  + N L+++Y+R G  + A  +F 
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS-IWNTLVNLYARCGRSEEAFSLFR 506

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  ++ ++W  L++G+G   L ++A   F +M + G   +  TF+  + A ++   + Q
Sbjct: 507 EIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQ 566

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G K     + + G ++  E    ++ L G+   +++A  +   M +    + W  ++  C
Sbjct: 567 G-KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSC 624

Query: 642 RIHA 645
             H 
Sbjct: 625 SQHG 628



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 245/484 (50%), Gaps = 26/484 (5%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA     G  ++  + N L+ +YA+   +  ARQ+F E+      D VSW  +++ YAQ
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSR---DHVSWVAMLSGYAQ 121

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G  +    L+++M     +    V L + LSAC     +++G+         +V+++  
Sbjct: 122 RGLGKEAFRLYSQMHWTAVIPTPYV-LSSVLSACTKGKLFAQGRMI-----HAQVYKQAF 175

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             +    NA++  Y   GSF+ A  +F  M    +  + VT++ +I+G+AQ GHG  AL 
Sbjct: 176 CSETFVGNALIALYLGFGSFKLAERVFCDM----LFCDRVTFNTLISGHAQCGHGECALQ 231

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F +MQ  GL P+ VT+ SLL+ CASVG L  GK+ H Y +K  +S       D +   +
Sbjct: 232 IFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF------DYITEGS 285

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+D+Y KC  ++ A  +F+     N  V  W +M+ +Y Q      +  +F QM  Q   
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTN--VVLWNLMLVAYGQISDLAKSFEIFGQM--QATG 341

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           + PN FT  C L  C     +  G QIH+  ++N +E  + +V+  LIDMYS+   +D A
Sbjct: 342 IHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM-YVSGVLIDMYSKYRCLDKA 400

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R + + L++R+VVSWTS++ GY  H   ++A   F +M+  G+ PD +       AC+  
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             + QGL+    +    G +A    +  +V+L  R  R +EA  L   +      I W  
Sbjct: 461 KAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREID-HKDEITWNG 518

Query: 637 LLNG 640
           L++G
Sbjct: 519 LISG 522


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 292/789 (37%), Positives = 442/789 (56%), Gaps = 89/789 (11%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSH----NAPSPALSLLQRISPSPFSVFWWNALIRRAV 111
           +H QII  +L H   ++ +A  ++H     AP     LL   + +P +VF + +++R   
Sbjct: 20  LHAQIIHNSLHH--HNYWVALLINHCTRLRAPPHYTHLLFNSTLNP-NVFVFTSMLRFYS 76

Query: 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF 171
            L+       ++ QM   G  PD + +P ++K+ G       G   HA +   G  S+ F
Sbjct: 77  HLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLGHGSDAF 131

Query: 172 VCNALMAMYARCDTLSYARQLFDEM--FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
           V NA++ MYAR   + +AR++FDE+  ++  + D   WN +V+ Y +  ++EG       
Sbjct: 132 VRNAVIDMYARLGPIGHARKVFDEIPDYERKVAD---WNAMVSGYWK-WESEG------- 180

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
                                                +A+ +F+ M  ++V++W AMVTG
Sbjct: 181 -------------------------------------QAQWLFDVMPERNVITWTAMVTG 203

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+++   E A   F  M + +V    V+W+A+++GYAQ G   EAL +F +M   G+EP+
Sbjct: 204 YAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPD 259

Query: 350 VVTLVSLLSGCASVG----ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
             T V+++S C+S G    A  L +  H   I+           +  V  AL+DMYAK  
Sbjct: 260 ETTWVTVISACSSRGDPCLAASLVRTLHQKRIQL----------NCFVRTALLDMYAKFG 309

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +D AR +F+ +    R+V TW  MI  Y+QNG +  A+ LF +M    KL  P+  T+ 
Sbjct: 310 DLDSARKLFNTMP--GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT-PDEVTMV 366

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + AC  L AL  G  +  ++  NQ ++ I    N +I MYSR G ++ A+ VF  +  
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISG-HNAMIFMYSRCGSMEDAKRVFQEMAT 425

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R+VVS+ +L++G+  HG G +A      M++ G+ PD VTF+ +L ACSH+G++++G K 
Sbjct: 426 RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKV 485

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F+S+ K+  I    +HYAC+VDLLGR   L++A   +E MPMEP   ++ +LLN  RIH 
Sbjct: 486 FESI-KDPAI----DHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHK 540

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
            VELGELAAN+L ELE +  G++ LLSNIYA+AGRWKDV RIR  MK  GVKK  G SWV
Sbjct: 541 QVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWV 600

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +       F V DR+H +S  IY++L  L ++++  GY+   S  L DV++EEK +++  
Sbjct: 601 EYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGT 660

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+ Y +L +  G  IR+ KNLR+C DCH+AI  IS +    II+RD+NRFH F +
Sbjct: 661 HSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFND 720

Query: 826 GSCTCKGYW 834
           G C+CK YW
Sbjct: 721 GLCSCKDYW 729


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/734 (37%), Positives = 420/734 (57%), Gaps = 26/734 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++   V+     +A  LF +M+  G  P+E+ F  V+ AC        G  VHA++ 
Sbjct: 170 WNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVV 229

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+D +VF  NAL+ MY++   +  A  +F ++ +    D+VSWN  ++     G  + 
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKT---DVVSWNAFISGCVLHGHDQH 286

Query: 223 GLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
            L L  +M  +G V       S++ A +   +       +  G M +A          D 
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKA------CADSDD 340

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               A+V  Y++ G  +DA  +F+ + ++++ L    W+A+I+G +  G   E+L +F +
Sbjct: 341 YIGVALVDMYAKYGLLDDARKVFEWIPRKDLLL----WNALISGCSHGGCHGESLSLFCR 396

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G + N  TL ++L   AS+ A+    + H    +++  +  SH     V+N LID 
Sbjct: 397 MRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALA-EKIGFLSDSH-----VVNGLIDS 450

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y KC  +  A  +F+  +  N  +  +T MI + SQ     DA+ LF +M +  K ++P+
Sbjct: 451 YWKCNCLRYANKVFEEHSSDN--IIAFTSMITALSQCDHGEDAIKLFMEMLR--KGLEPD 506

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            F LS  L ACA L+A   G+Q+HA++++ ++ M   F  N L+  Y++ G I+ A + F
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKF-MTDVFAGNALVYTYAKCGSIEDADLAF 565

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
             L  + VVSW++++ G   HG G +A   F +M  E +AP+ +T   +L AC+H+G+VD
Sbjct: 566 SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVD 625

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +   YF SM + FGI    EHY+C++DLLGRA +LD+A+EL+  MP E    +W ALL  
Sbjct: 626 EAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAA 685

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            R+H + ELG+LAA +L  LE EK G++ LL+N YA+AG W +VA++R LMK + VKK P
Sbjct: 686 SRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEP 745

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
             SWV+ K+   TF VGD++HP+++ IY  L  L   +   GYVP     LHDVD  EK 
Sbjct: 746 AMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKE 805

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            LL  HSE+LA+A+ +++T  G PIR+ KNLRIC DCH A  FIS I++ EII+RD NRF
Sbjct: 806 LLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 865

Query: 821 HHFKEGSCTCKGYW 834
           HHF +G+C+C  YW
Sbjct: 866 HHFSDGACSCGDYW 879



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 187/614 (30%), Positives = 292/614 (47%), Gaps = 38/614 (6%)

Query: 39  ITSLLLR--QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           I+ LL R    +SL     IH  ++   L H   +HL++ Y     P  A  +    +P 
Sbjct: 7   ISPLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDE-TPD 65

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           P  V W ++L+       LP  A   F  M  RG   +E+  P VLK     P +  G  
Sbjct: 66  PCHVSW-SSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCA---PDAGLGVQ 121

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VHAV  S+G   ++FV NAL+AMY     +  AR++FDE  +    + VSWN +++A+ +
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDR--NAVSWNGMMSAFVK 179

Query: 217 SGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           +      + LF  M    V+    G S V  ++AC    T SR  + G    A  V    
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFGFSCV--VNAC----TGSRDLEAGRKVHA-MVVRTG 232

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             KDV + NA+V  YS++G    A  +F K+     K +VV+W+A I+G    GH   AL
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVP----KTDVVSWNAFISGCVLHGHDQHAL 288

Query: 336 DVFRQMQFCGLEPNVVTLVSLLS--GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           ++  QM+  GL PNV TL S+L     A  GA  LG++ H + IK       +  DD + 
Sbjct: 289 ELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKAC-----ADSDDYIG 343

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           + AL+DMYAK   +D AR +F+ I  K  D+  W  +I   S  G   ++L+LF +M ++
Sbjct: 344 V-ALVDMYAKYGLLDDARKVFEWIPRK--DLLLWNALISGCSHGGCHGESLSLFCRMRKE 400

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              +  N  TL+  L + A L A+    Q+HA   +  + +    V N LID Y +   +
Sbjct: 401 GSDI--NRTTLAAVLKSTASLEAISDTTQVHALAEKIGF-LSDSHVVNGLIDSYWKCNCL 457

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             A  VF+     N++++TS++T       G+ A   F +M ++GL PD      LL AC
Sbjct: 458 RYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517

Query: 574 SHSGMVDQGLKYFDSMSK-EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           +     +QG +    + K +F     A +   +V    +   +++A     G+P +   +
Sbjct: 518 ASLSAYEQGKQVHAHLIKRKFMTDVFAGN--ALVYTYAKCGSIEDADLAFSGLP-DKGVV 574

Query: 633 IWVALLNGCRIHAN 646
            W A++ G   H +
Sbjct: 575 SWSAMIGGLAQHGH 588


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/653 (40%), Positives = 389/653 (59%), Gaps = 33/653 (5%)

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LF++ F     D+ SWN+++A  A+ GD+   L  F+ M   + ++ +  +   A+ +C+
Sbjct: 37  LFNKYFDR--TDVYSWNSLIAELARGGDSCESLRAFSWMR-KLDIKPNRSTFPCAIKSCS 93

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           +L   + GKQ     +   VF      D+   +A++  YS+ G   +A  LF ++ + N+
Sbjct: 94  ALFDLNSGKQA---HQQALVFGFES--DLFVSSALIDMYSKCGKLSNARVLFDEIPRRNI 148

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF---------CGLEPNVVTLVSLLSGCAS 362
               VTW+++I GY Q    HEAL VF++  F          G   + V ++S+LS C+ 
Sbjct: 149 ----VTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSR 204

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLM-VINALIDMYAKCKSVDVARVMFDAIAPKN 421
           V    + +  H   IK  L       D +M V N L+D YAKC  V ++R +FD +A K 
Sbjct: 205 VSNKAVSEGVHGVAIKVGL-------DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK- 256

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
            DV +W  MI  Y+QNG + DA  +F  M +     K N  TLS  L+ACA   ALR G 
Sbjct: 257 -DVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGG-GKYNEVTLSTLLLACAHEGALRVGM 314

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            +H  V++  Y   +  +A  +IDMY + G  + AR  FD +K++NV SWT+++ GYGMH
Sbjct: 315 CLHDQVIKMGYVNNV-IMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMH 373

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G   +A   F QM   G+ P+ +TF+ +L ACSH+G +++G ++F++MS E+ +    EH
Sbjct: 374 GFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEH 433

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           Y C+VDLLGRA  + EA  LI+ M +    ++W +LL  CRIH +VEL E++A  L +L+
Sbjct: 434 YGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLD 493

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
               G Y LL+NIYA+AGRWKDV R+R L+K  G+ K PG S V+ K     F VGD+ H
Sbjct: 494 PSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEH 553

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           PQ +KIY+ L  L  +++  GYVP  +  LHDVD+EEK  ++  HSEKLA+A+G++ + P
Sbjct: 554 PQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIP 613

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G+ I + KNLR+CGDCH+ I  IS I++ EII+RD+ RFHHFK+G C+C  YW
Sbjct: 614 GSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 90/509 (17%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V+ WN+LI    R      + R F  M +    P+  TFP  +K+C  L     G   H 
Sbjct: 47  VYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQ 106

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                GF+S++FV +AL+ MY++C  LS AR LFDE+ +    +IV+W +++  Y Q+ D
Sbjct: 107 QALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRR---NIVTWTSLITGYVQNDD 163

Query: 220 AEGGLM-----LFARMTG---DVKVQGDGVSLVNALSACASLGTWSRGK----------- 260
           A   LM     LF +  G   +V    D V++++ LSAC+ +   +  +           
Sbjct: 164 AHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGL 223

Query: 261 ---------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                          +CG +  ++KVF+ M  KDVVSWN+M+  Y++ G   DAF +F  
Sbjct: 224 DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHG 283

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M                                  ++  G + N VTL +LL  CA  GA
Sbjct: 284 M----------------------------------LKAGGGKYNEVTLSTLLLACAHEGA 309

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L +G   H   IK        + +++++  ++IDMY KC   ++AR  FD +  KN  V 
Sbjct: 310 LRVGMCLHDQVIKM------GYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKN--VR 361

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG-RQIH 484
           +WT MI  Y  +G A +AL +F QM      VKPN  T    L AC+    L  G R  +
Sbjct: 362 SWTAMIAGYGMHGFAREALDVFYQMIWAG--VKPNYITFISVLAACSHAGFLEEGWRWFN 419

Query: 485 AYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           A  + ++Y +  P V +  C++D+  R+G I  A  +  ++K +R+ V W SL+    +H
Sbjct: 420 A--MSHEYNVE-PGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIH 476

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
              + A  +  ++ K  L P    + VLL
Sbjct: 477 KDVELAEISARELFK--LDPSNCGYYVLL 503


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/783 (35%), Positives = 423/783 (54%), Gaps = 59/783 (7%)

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           L   P + L+  Y S  AP   L  L R  P P   F  NAL+R    LR P   F    
Sbjct: 51  LDPAPATALLLRYASLRAPPSHLLRLFRAFPCP-DRFLRNALLRSLPSLR-PHLLFP--- 105

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSR-----CGSSVHAVICSSGFDSNVFVCNALMAM 179
                   PD ++F F   +     SSR        ++H +  ++G+ ++ FV +AL  +
Sbjct: 106 -------SPDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKL 158

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y +      AR++FD +  P   D + WNT++A    S   E     F RM    +V+ D
Sbjct: 159 YFKLSRGDDARKVFDTVPSP---DTILWNTLLAGLPGSEALEA----FVRMVDAGRVRPD 211

Query: 240 GVSLVNALSACASLGTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
             +L ++L A A     + G+       +CG+ E    V              +++ YS+
Sbjct: 212 STTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVV------------TGLMSLYSK 259

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G  + A  LF +M   ++    V ++A+I+GY+  G    ++++F+++   G  PN  T
Sbjct: 260 CGDMDSAQFLFDRMDNPDL----VAYNALISGYSVNGMVESSVELFKELTASGWRPNSST 315

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           LV+++   +  G  LL +  H + +K  L  D       +V  AL  +Y +   ++ AR 
Sbjct: 316 LVAVIPVYSPFGHELLARCLHAFVVKARLDADA------LVSTALTTLYCRLNDMESARS 369

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FDA+  K  +  +W  MI  Y+QNG    A+ALF  M  Q+  V+PN  T+S  L ACA
Sbjct: 370 IFDAMLEKTME--SWNAMISGYAQNGLTEMAVALFQLM--QELNVQPNPITISSTLSACA 425

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L AL  G+ +H  + + + E+ + +V   LIDMY++ G I  AR +FD +  +NVVSW 
Sbjct: 426 HLGALSLGKWVHRIISKEKLELNV-YVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWN 484

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           ++++GYG+HG G +A   +  M    + P   TFL ++YACSH G+VD+G K F  M+ E
Sbjct: 485 AMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNE 544

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGE 651
           + I+   EH  C+VDLLGRA +L+EA+ELI   P     P +W ALL  C +H N +L +
Sbjct: 545 YRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAK 604

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
           LA+ +L EL+SE  G Y LLSN+Y +   + + A +R   K   + K PGC+ ++  +  
Sbjct: 605 LASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRP 664

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F  GD  HPQS+ IY  L  L  ++   GY P T  AL+DV++EEK  ++  HSEKLA
Sbjct: 665 HVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLA 724

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+G+L+T PGT IRI KNLR+C DCH+A  FIS +    I++RD++RFHHF++G C+C 
Sbjct: 725 IAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCG 784

Query: 832 GYW 834
            YW
Sbjct: 785 DYW 787


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/680 (37%), Positives = 401/680 (58%), Gaps = 25/680 (3%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           + ++A +  +G     F+   L+   +    +S AR+LFD+   P   D+  WN IV  Y
Sbjct: 92  NQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDP---DVFLWNAIVRCY 148

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           ++ G     + ++ARM     V  DG S    L AC++L     G++        ++F  
Sbjct: 149 SRHGFFGHAIEMYARMQVAC-VSPDGFSFPCVLKACSALPALEMGRRV-----HGQIFRH 202

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   N +V  Y++ G    A A+F ++    V   +V+W+++I+GYAQ G   EA
Sbjct: 203 GFESDVFVQNGLVALYAKCGEIVRANAVFGRL----VDRTIVSWTSIISGYAQNGQPIEA 258

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L +F +M+   + P+ + LVS+L     V  L  GK  H   IK  L  +     DL++ 
Sbjct: 259 LRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEF----DLLI- 313

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L  +YAKC  V VAR+ F+ +  +N  +  W  MI  Y +NG A +A+ LF  M  + 
Sbjct: 314 -SLTSLYAKCGHVMVARLFFNQV--ENPSLIFWNAMISGYVKNGYAEEAIELFRLM--KS 368

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           K ++P++ T++ ++ ACA++ +L   R +  Y+  +++   +  V   LID Y++ G +D
Sbjct: 369 KNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDV-IVNTSLIDTYAKCGSVD 427

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR VFD +  ++VV W+++M GYG+HG G ++   F  MR+ G++P+ VTF+ LL AC 
Sbjct: 428 MARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACK 487

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           +SG+V++G   F  M +++GI  R +HYAC+VDLLGRA  LD A   +  MP+EP   +W
Sbjct: 488 NSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVW 546

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ C+IH +V LGE AA RL  L+    G Y  LSN+YA++  W  VA++R LM+  
Sbjct: 547 GALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREK 606

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G+ K  G S ++       F  GD+THP+S++I+E +  L +R+K  G+VP T   LHD+
Sbjct: 607 GLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDL 666

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           + EE  + L  HSE+LA+AYG+++T PGT +RITKNLR C +CH+AI  IS +++ EI++
Sbjct: 667 NYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVV 726

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD+ RFHHFK+G+C+C  YW
Sbjct: 727 RDACRFHHFKDGACSCGDYW 746



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 217/478 (45%), Gaps = 86/478 (17%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P  VF WNA++R   R     +A  ++ +M      PD ++FP VLKAC  LP+   G
Sbjct: 134 PDP-DVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMG 192

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH  I   GF+S+VFV N L+A+YA+C  +  A  +F  +       IVSW +I++ Y
Sbjct: 193 RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR---TIVSWTSIISGY 249

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
           AQ+G     L +F+ M     V+ D ++LV+ L A   +     GK              
Sbjct: 250 AQNGQPIEALRIFSEMR-KTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECE 308

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       +CG +  A+  F +++   ++ WNAM++GY + G  E+A  LF+ M+ 
Sbjct: 309 FDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKS 368

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           +N++ + +T ++ IA                                    CA +G+L L
Sbjct: 369 KNIRPDSITVTSSIA-----------------------------------ACAQIGSLEL 393

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
            +    Y             +D++V  +LID YAKC SVD+AR +FD I   ++DV  W+
Sbjct: 394 ARWMDEYISMSEFR------NDVIVNTSLIDTYAKCGSVDMARFVFDRIP--DKDVVVWS 445

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG----RQIH 484
            M+  Y  +G   +++ LF  M Q    V PN  T    L AC     +  G     ++ 
Sbjct: 446 AMMVGYGLHGQGRESIILFHAMRQAG--VSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR 503

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            Y +  +++        C++D+  R+G +D A     N+  +  V  W +L++   +H
Sbjct: 504 DYGIEPRHQHYA-----CVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/732 (36%), Positives = 405/732 (55%), Gaps = 24/732 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N LI    +    D A  +F +M   G  PD  T   +L AC  +   R G  +H+ + 
Sbjct: 212 FNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLL 271

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G   +  +  +L+ +Y +   +  A Q+FD   +    ++V WN ++ AY Q  D   
Sbjct: 272 KAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRT---NVVLWNLMLVAYGQIDDLAK 328

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              +F RM     V+ +  +    L  C   G    G+Q   +         M V  V  
Sbjct: 329 SFDIFYRMLA-AGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGV-- 385

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              ++  YS+ G  + A  +   + +++V    V+W+++IAGY Q     EAL+ F++MQ
Sbjct: 386 ---LIDMYSKYGWLDKAQRILDMIEEKDV----VSWTSMIAGYVQHEFCKEALETFKEMQ 438

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            CG+ P+ + L S +S CA + A+  G + H     RV  V G +  D+ + N L+ +YA
Sbjct: 439 ACGIWPDNIGLASAISACAGIKAVHQGSQIHA----RVY-VSG-YSADVSIWNGLVYLYA 492

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C     A   F+AI  ++++  TW  +I  ++Q+G   +AL +F +M Q     K N F
Sbjct: 493 RCGISKEAFSSFEAI--EHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAG--AKYNVF 548

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T   ++ A A LA ++ G+QIHA V++  Y      ++N LI +Y + G I+ A++ F  
Sbjct: 549 TFVSSISASANLADIKQGKQIHARVIKTGYTSETE-ISNALISLYGKCGSIEDAKMDFFE 607

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSW +++T    HG G +A   FDQM+++GL P  VTF+ +L ACSH G+V++G
Sbjct: 608 MTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEG 667

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YF SMS E GI  R +HYAC+VD+LGRA +LD A   +E MP+    ++W  LL+ C+
Sbjct: 668 LCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACK 727

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H N+E+GE AA  LLELE     SY LLSN YA  G+W    +IR +MK  GV+K PG 
Sbjct: 728 VHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGR 787

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ K     FFVGDR HP + +IY  L+ L  R+  +GY  +     H+ + E K   
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPT 847

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
            F HSEKLA+A+G+++     P+R+ KNLR+C DCH+ + F S ++  EI+LRD  RFHH
Sbjct: 848 AFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHH 907

Query: 823 FKEGSCTCKGYW 834
           F  GSC+C  YW
Sbjct: 908 FNNGSCSCGDYW 919



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 262/544 (48%), Gaps = 28/544 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +  L + A RL+ +M R G  P  Y    +L AC +    + G  +H  + 
Sbjct: 111 WVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVY 170

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GF S  FV NAL+++Y RC +   A ++F +M     CD V++NT+++ +AQ G  + 
Sbjct: 171 KQGFFSETFVGNALISLYLRCRSFRLADRVFCDML---YCDSVTFNTLISGHAQCGHGDR 227

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M     +  D V++ + L+AC+++G   +GKQ         + +     D + 
Sbjct: 228 ALGIFDEMQLS-GLSPDSVTIASLLAACSAVGDLRKGKQL-----HSYLLKAGMSLDYIM 281

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             +++  Y + G  E+A  +F        + NVV W+ ++  Y Q     ++ D+F +M 
Sbjct: 282 EGSLLDLYVKSGDIEEALQIF----DSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRML 337

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+ PN  T   +L  C   G + LG++ H  TIK           D+ V   LIDMY+
Sbjct: 338 AAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN------GFQSDMYVSGVLIDMYS 391

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           K   +D A+ + D I  K  DV +WT MI  Y Q+    +AL  F +M  Q   + P+  
Sbjct: 392 KYGWLDKAQRILDMIEEK--DVVSWTSMIAGYVQHEFCKEALETFKEM--QACGIWPDNI 447

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            L+ A+ ACA + A+  G QIHA V  + Y   +  + N L+ +Y+R G    A   F+ 
Sbjct: 448 GLASAISACAGIKAVHQGSQIHARVYVSGYSADVS-IWNGLVYLYARCGISKEAFSSFEA 506

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           ++ +  ++W  L++G+   GL ++A   F +M + G   +  TF+  + A ++   + QG
Sbjct: 507 IEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQG 566

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA-VELIEGMPMEPTPIIWVALLNGC 641
            K   +   + G ++  E    ++ L G+   +++A ++  E    +   + W  ++  C
Sbjct: 567 -KQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFE--MTKRNEVSWNTIITCC 623

Query: 642 RIHA 645
             H 
Sbjct: 624 SQHG 627



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 164/566 (28%), Positives = 274/566 (48%), Gaps = 32/566 (5%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           P+    LF    R+        F   L+AC G          +HA     G      + N
Sbjct: 22  PEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGN 81

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
            L+ +YA+   +  AR++F+E+    + D VSW  +++ YAQ+G  E  + L+  M    
Sbjct: 82  LLIDLYAKKGFVRRARRVFEEL---SVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSG 138

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
            V    V L + LSAC     +  G+   +     +V+++    +    NA+++ Y R  
Sbjct: 139 VVPTPYV-LSSILSACTKTELFQLGRLIHV-----QVYKQGFFSETFVGNALISLYLRCR 192

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           SF  A  +F  M    +  + VT++ +I+G+AQ GHG  AL +F +MQ  GL P+ VT+ 
Sbjct: 193 SFRLADRVFCDM----LYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIA 248

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SLL+ C++VG L  GK+ H Y +K  +S+      D ++  +L+D+Y K   ++ A  +F
Sbjct: 249 SLLAACSAVGDLRKGKQLHSYLLKAGMSL------DYIMEGSLLDLYVKSGDIEEALQIF 302

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D+    N  V  W +M+ +Y Q      +  +F +M      V+PN FT  C L  C   
Sbjct: 303 DSGDRTN--VVLWNLMLVAYGQIDDLAKSFDIFYRMLAAG--VRPNKFTYPCMLRTCTHT 358

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             +  G QIH+  ++N ++  + +V+  LIDMYS+ G +D A+ + D +++++VVSWTS+
Sbjct: 359 GEIGLGEQIHSLTIKNGFQSDM-YVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSM 417

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + GY  H    +A   F +M+  G+ PD +     + AC+    V QG +    +    G
Sbjct: 418 IAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-G 476

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
            SA    +  +V L  R     EA    E +  +   I W  L++G    A   L E A 
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEG-ITWNGLISG---FAQSGLYEEAL 532

Query: 655 NRLLELES--EKDGSYTLLSNIYANA 678
              ++++    K   +T +S+I A+A
Sbjct: 533 KVFMKMDQAGAKYNVFTFVSSISASA 558


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 290/811 (35%), Positives = 448/811 (55%), Gaps = 45/811 (5%)

Query: 36  CIKITSL-LLRQCK---SLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSL 89
           C  +T L +L+ C     L+Q   IH  I+   L    V  + L+  Y S    + A+ L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 90  LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149
            +++     S   WNA I    +      A  LF +M   G  P   T    L  C  + 
Sbjct: 186 FEKMERDLVS---WNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATI- 241

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
             R   ++H ++  SG +  + V  AL + YAR   L  A+++FD   +    D+VSWN 
Sbjct: 242 --RQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAER---DVVSWNA 296

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           ++ AYAQ G      +LFARM  +  +    V+LVNA + C+SL        C +     
Sbjct: 297 MLGAYAQHGHMSEAALLFARMLHE-GISPSKVTLVNASTGCSSLRFGRMIHGCAL----- 350

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
              E+   +D+V  NA++  Y+R GS E+A  LFK+     +  N V+W+ +IAG +Q+G
Sbjct: 351 ---EKGLDRDIVLGNALLDMYTRCGSPEEARHLFKR-----IPCNAVSWNTMIAGSSQKG 402

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDG 385
               A+++F++MQ  G+ P   T ++LL   AS      A+  G++ H     R++S   
Sbjct: 403 QMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLH----SRIVSC-- 456

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDAL 444
            +  +  +  A++ MYA C ++D A   F   A ++R DV +W  +I S SQ+G    AL
Sbjct: 457 GYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRAL 516

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
             F +M      V PN  T    L ACA  AAL  G  +H ++  +  E  + FVA  L 
Sbjct: 517 GFFRRMDLHG--VAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNL-FVATALA 573

Query: 505 DMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
            MY R G +++AR +F+ +  +R+VV + +++  Y  +GL  +A   F +M++EG  PD 
Sbjct: 574 SMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDE 633

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
            +F+ +L ACSH G+ D+G + F SM + +GI+   +HYAC VD+LGRA  L +A ELI 
Sbjct: 634 QSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIR 693

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            M ++PT ++W  LL  CR + +V+ G LA + + EL+   + +Y +LSNI A AG+W +
Sbjct: 694 CMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDE 753

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
            A +R+ M+  G++K  G SW++ K     F  GDR+HP+S++IY  L  L   I+ +GY
Sbjct: 754 AAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGY 813

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           VP T   L  VD+ EK  LL +HSE+LA+A G+++++  T +R+ KNLR+C DCH+A  F
Sbjct: 814 VPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKF 872

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS I+N EI++RD++RFHHF +GSC+C  YW
Sbjct: 873 ISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 165/368 (44%), Gaps = 65/368 (17%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +C  + + ++VF R++V+D  SW  ++T Y+  G  + A  +F +M+QE V+ + VT+ A
Sbjct: 74  KCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLA 133

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS-----GCASVGALLLGKE---- 371
           V+   A+ G   +   +   +   GL+   V    LL      GC +   LL  K     
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMERDL 193

Query: 372 ------------------------------------------THCYTIKRVLSV-----D 384
                                                     T C TI++  ++     +
Sbjct: 194 VSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVRE 253

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                 L+V  AL   YA+   +  A+ +FD  A   RDV +W  M+G+Y+Q+G  ++A 
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLYQAKEVFDRAA--ERDVVSWNAMLGAYAQHGHMSEAA 311

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF +M  +   + P+  TL  A   C   ++LRFGR IH   L    +  I  + N L+
Sbjct: 312 LLFARMLHEG--ISPSKVTLVNASTGC---SSLRFGRMIHGCALEKGLDRDI-VLGNALL 365

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           DMY+R G  + AR +F  +   N VSW +++ G    G   +A   F +M+ EG+AP   
Sbjct: 366 DMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRA 424

Query: 565 TFLVLLYA 572
           T+L LL A
Sbjct: 425 TYLNLLEA 432



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  GR+IHA ++    E     + N L+ +Y +   +     VF  L+ R+  SWT+++T
Sbjct: 45  LSQGRRIHARIVSLGLE---EELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIIT 101

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
            Y  HG   +A   F +M++EG+  D VTFL +L AC+  G + QG +   +   E G+ 
Sbjct: 102 AYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RSIHAWIVESGLK 160

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
            ++     ++ + G    +  A+ L E   ME   + W A      I AN + G+L
Sbjct: 161 GKSVLANLLLHIYGSCGCVASAMLLFE--KMERDLVSWNAA-----IAANAQSGDL 209


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/710 (35%), Positives = 409/710 (57%), Gaps = 52/710 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCD--TLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            H  +  +G  S+ +  + L AM A     +L YAR++FDE+ +P   +  +WNT++ AY
Sbjct: 49  THGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP---NSFAWNTLIRAY 105

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           A   D    +  F  M  + +   +  +    + A A + + S G+    M     V   
Sbjct: 106 ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVG-- 163

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   N+++  Y   G  + A  +F  +++++V    V+W+++I G+ Q+G   +A
Sbjct: 164 ---SDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV----VSWNSMINGFVQKGSPDKA 216

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L++F++M+   ++ + VT+V +LS CA +  L  G++   Y  +  ++V+      L + 
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN------LTLA 270

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVA 425
           NA++DMY KC S++ A+ +FDA+  K+                             +D+ 
Sbjct: 271 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIV 330

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  +I +Y QNG  N+AL +F ++ Q  K +K N  TL   L ACA++ AL  GR IH+
Sbjct: 331 AWNALISAYEQNGKPNEALIVFHEL-QLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y+ ++   M    V + LI MYS+ GD++ +R VF+++++R+V  W++++ G  MHG G+
Sbjct: 390 YIKKHGIRMNF-HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGN 448

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F +M++  + P+GVTF  +  ACSH+G+VD+    F  M   +GI    +HYACI
Sbjct: 449 EAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACI 508

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VD+LGR+  L++AV+ IE MP+ P+  +W ALL  C+IHAN+ L E+A  RLLELE   D
Sbjct: 509 VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRND 568

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G++ LLSNIYA  G+W++V+ +R  M+ TG+KK PGCS ++       F  GD  HP S+
Sbjct: 569 GAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSE 628

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE-KGDLLFEHSEKLALAYGILTTAPGTP 784
           K+Y  L  +++++K+ GY P+ S  L  +++EE K   L  HSEKLA+ YG+++T     
Sbjct: 629 KVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKV 688

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IR+ KNLR+CGDCHS    IS + + EII+RD  RFHHF+ G C+C  +W
Sbjct: 689 IRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/508 (31%), Positives = 257/508 (50%), Gaps = 56/508 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPS----HLIAAYVSHNAPSPALSLLQRISPSPF 98
           L+ +C SL Q+   H  +I       P S      +AA  S  +   A  +   I P P 
Sbjct: 36  LIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEI-PKPN 94

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSV 157
           S F WN LIR       P  +   FL M+     +P++YTFPF++KA  E+ S   G S+
Sbjct: 95  S-FAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H +   S   S+VFV N+L+  Y  C  L  A ++F  + +    D+VSWN+++  + Q 
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK---DVVSWNSMINGFVQK 210

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
           G  +  L LF +M  +  V+   V++V  LSACA +     G+Q                
Sbjct: 211 GSPDKALELFKKMESE-DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTL 269

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                     CG +E+AK++F+ M+ KD V+W  M+ GY+    +E A  +   M Q+  
Sbjct: 270 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK-- 327

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGK 370
             ++V W+A+I+ Y Q G  +EAL VF ++Q    ++ N +TLVS LS CA VGAL LG+
Sbjct: 328 --DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H Y  K  + +      +  V +ALI MY+KC  ++ +R +F+++  + RDV  W+ M
Sbjct: 386 WIHSYIKKHGIRM------NFHVTSALIHMYSKCGDLEKSREVFNSV--EKRDVFVWSAM 437

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           IG  + +G  N+A+ +F +M  Q+  VKPN  T +    AC+    +     +  + + +
Sbjct: 438 IGGLAMHGCGNEAVDMFYKM--QEANVKPNGVTFTNVFCACSHTGLVDEAESLF-HQMES 494

Query: 491 QYEMLIPFVAN--CLIDMYSRSGDIDTA 516
            Y  ++P   +  C++D+  RSG ++ A
Sbjct: 495 NYG-IVPEEKHYACIVDVLGRSGYLEKA 521


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 281/751 (37%), Positives = 424/751 (56%), Gaps = 25/751 (3%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLP-DNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
           A  +  RI P+P     +NALIR A   R P   A  L+  M+     P++YTFPFVLKA
Sbjct: 52  ARQVFDRI-PAP-DARAYNALIR-AYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C  L     G ++HA   + G  +++FV  AL+ +Y RC     A  +F +M    + D+
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKM---PMRDV 165

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           V+WN ++A YA  G     +     M     ++ +  +LV+ L   A  G   +G    +
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTS--V 223

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                + +     + V+   A++  Y++      A  +F  M   N     VTWSA+I G
Sbjct: 224 HAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNE----VTWSALIGG 279

Query: 325 YAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           +       EA ++F+ M   G+   +  ++ S L  CAS+  L +G + H      +L+ 
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHA-----LLAK 334

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
            G H D L   N+L+ MYAK   ++ A ++FD IA K  D  ++  ++  Y QNG A +A
Sbjct: 335 SGIHAD-LTAGNSLLSMYAKAGLINEATMLFDEIAIK--DTISYGALLSGYVQNGKAEEA 391

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
             +F +M  Q   V+P+  T+   + AC+ LAAL+ GR  H  V+     +    + N L
Sbjct: 392 FLVFKKM--QACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS-ICNSL 448

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           IDMY++ G ID +R VFD +  R++VSW +++ GYG+HGLG +A   F  M+ +G  PD 
Sbjct: 449 IDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDD 508

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           VTF+ L+ ACSHSG+V +G  +FD+M+ ++GI  R EHY C+VDLL R   LDEA + I+
Sbjct: 509 VTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQ 568

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            MP++    +W ALL  CRIH N++LG+  +  + +L  E  G++ LLSNI++ AGR+ +
Sbjct: 569 SMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDE 628

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
            A +R + K  G KK PGCSW++       F  GD++HP S  IY  L  ++  IK +GY
Sbjct: 629 AAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGY 688

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
              TSF L D+++EEK   L  HSEKLA+A+G+L+      I +TKNLR+CGDCH+AI +
Sbjct: 689 QADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKY 748

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++++ N  II+RD+NRFHHFK G C+C  +W
Sbjct: 749 MTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/833 (33%), Positives = 437/833 (52%), Gaps = 112/833 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           ++F WNAL+   VR  L D A   FL+++    + PD +TFP ++KAC        G SV
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H +    G   ++FV NA++A+Y +C  L  A +LFD+M +    +++SWN+++  ++++
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQ---NLISWNSLIRGFSEN 289

Query: 218 GDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRG---------------- 259
           G        F  +  +GD  +  D  ++V  L  C+  G    G                
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIP-DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHEL 348

Query: 260 ----------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK--MR 307
                      +CG + EA  +F +++ K VVSWN+M+  YSR G   + F L +K  M 
Sbjct: 349 MVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWME 408

Query: 308 QENVKLNVVTW-----------------------------------SAVIAGYAQRGH-- 330
           +E +++N VT                                    +A IA YA+ G   
Sbjct: 409 EELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLV 468

Query: 331 ----------------------GH-------EALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
                                 GH       +ALD + +M   G+ P+  ++VSLL  C 
Sbjct: 469 FAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACG 528

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +G L  GKE H + ++  L ++        V  +L+ +Y  C      R  F+ +  KN
Sbjct: 529 RLGLLQYGKEIHGFVLRNGLEMNS------FVAVSLLSLYFHCSKPFYGRTYFETMGDKN 582

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
                W  M+  YSQN   N+AL+LF QM      ++P+   ++  L AC++L+AL  G+
Sbjct: 583 S--VCWNAMLSGYSQNELPNEALSLFRQMLSDG--LEPDEIAIASILGACSQLSALGLGK 638

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           ++H + L+N   M   FVA  L+DMY++SG +  ++ +F+ L  + V SW  ++TG+G+H
Sbjct: 639 EVHCFALKNSL-MEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G G+KA   F+ M++    PD  TFL +L AC H+G+V +GL Y   M   + +    EH
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEH 757

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YAC++D+LGRA RL+EA+  I  MP EP   IW +LL+    + ++E+GE  A +LL LE
Sbjct: 758 YACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALE 817

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
           + K  SY LLSN+YA AG+W  V  +R  MK   ++K  GCSW++ +    +F  G+ ++
Sbjct: 818 ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSN 877

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P S +I ++   L ++I  +GY P  S  LH++++ EK  +L  HSEK+A+ +G L T  
Sbjct: 878 PSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKE 937

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GT +RI+KNLRIC DCH+A  +IS     EI++RD+ RFHHFK+G C+C  YW
Sbjct: 938 GTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 250/537 (46%), Gaps = 52/537 (9%)

Query: 124 LQMMRRGWHPD--------EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           L  ++R W  +        +     +L+ CG+  +   G  +  ++C S   S  FV N 
Sbjct: 88  LDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNT 147

Query: 176 -LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
            L+ MY+ C     +R +FD +      ++  WN +V+ Y ++   +  +  F  +    
Sbjct: 148 RLITMYSICGYPLESRLVFDRLLNK---NLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           + Q D  +    + AC        GK    M     +     + D+   NAM+  Y + G
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGL-----IMDLFVGNAMIALYGKCG 259

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVT 352
             ++A  LF KM ++    N+++W+++I G+++ G   EA   FR +     GL P+V T
Sbjct: 260 FLDEAVELFDKMPEQ----NLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVAT 315

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           +V+LL  C+  G + +G   H   +K  L        +LMV NALIDMY+KC  +  A +
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGL------VHELMVCNALIDMYSKCGCLSEAAI 369

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  I  +N+ V +W  MIG+YS+ G   +   L  +M+ +++L++ N  T+   L AC 
Sbjct: 370 LFRKI--ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACL 427

Query: 473 RLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
             + L   R +H Y LR+  QY+ LI    N  I  Y++ G +  A  VF  +  ++V S
Sbjct: 428 EESELLSLRALHGYSLRHSFQYKELIN---NAFIAAYAKCGSLVFAEHVFFGMNTKSVSS 484

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG-------L 583
           W +++ G+  +G   KA   + +M + G+ PD  + + LL AC   G++  G       L
Sbjct: 485 WNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVL 544

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +    M+    +S  + ++ C     GR           E M  +   + W A+L+G
Sbjct: 545 RNGLEMNSFVAVSLLSLYFHCSKPFYGRT--------YFETMG-DKNSVCWNAMLSG 592


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 408/678 (60%), Gaps = 23/678 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +   G   + F+   L+   +    +++ARQ+FD++ +P    I  WN I+  Y++
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRP---QIFPWNAIIRGYSR 96

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +   +  L++++ M    +V  D  +  + L AC+ L     G+         +VF    
Sbjct: 97  NNHFQDALLMYSNMQL-ARVSPDSFTFPHLLKACSGLSHLQMGRFV-----HAQVFRLGF 150

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV   N ++  Y++      A  +F+ +     +  +V+W+A+++ YAQ G   EAL+
Sbjct: 151 DADVFVQNGLIALYAKCRRLGSARTVFEGLPLP--ERTIVSWTAIVSAYAQNGEPMEALE 208

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F QM+   ++P+ V LVS+L+    +  L  G+  H   +K  L ++   PD L+ +N 
Sbjct: 209 IFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE---PDLLISLNT 265

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
              MYAKC  V  A+++FD +  K+ ++  W  MI  Y++NG A +A+ +F +M  +D  
Sbjct: 266 ---MYAKCGQVATAKILFDKM--KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-- 318

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+P+  +++ A+ ACA++ +L   R ++ YV R+ Y   + F+++ LIDM+++ G ++ A
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDV-FISSALIDMFAKCGSVEGA 377

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R+VFD    R+VV W++++ GYG+HG   +A   +  M + G+ P+ VTFL LL AC+HS
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +G  +F+ M+ +  I+ + +HYAC++DLLGRA  LD+A E+I+ MP++P   +W A
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ C+ H +VELGE AA +L  ++    G Y  LSN+YA A  W  VA +R  MK  G+
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
            K  GCSWV+ +     F VGD++HP+ ++I   +  +  R+K  G+V     +LHD++D
Sbjct: 557 NKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EE  + L  HSE++A+AYG+++T  GTP+RITKNLR C +CH+A   IS +++ EI++RD
Sbjct: 617 EEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRD 676

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHFK+G C+C  YW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694



 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 233/487 (47%), Gaps = 76/487 (15%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P  +F WNA+IR   R     +A  ++  M      PD +TFP +LKAC  L   + G
Sbjct: 80  PRP-QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VHA +   GFD++VFV N L+A+YA+C  L  AR +F+ +  P    IVSW  IV+AY
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT-IVSWTAIVSAY 197

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
           AQ+G+    L +F++M   + V+ D V+LV+ L+A   L    +G+              
Sbjct: 198 AQNGEPMEALEIFSQMR-KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       +CG +  AK +F++MK  +++ WNAM++GY++ G   +A  +F +M  
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           ++V+ + +                                   ++ S +S CA VG+L  
Sbjct: 317 KDVRPDTI-----------------------------------SITSAISACAQVGSLEQ 341

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
            +  + Y  +        + DD+ + +ALIDM+AKC SV+ AR++FD     +RDV  W+
Sbjct: 342 ARSMYEYVGR------SDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL--DRDVVVWS 393

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI  Y  +G A +A++L+  M  +   V PN  T    LMAC     +R G      + 
Sbjct: 394 AMIVGYGLHGRAREAISLYRAM--ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
            ++        A C+ID+  R+G +D A  V   +  Q  V  W +L++    H   +  
Sbjct: 452 DHKINPQQQHYA-CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 548 HWAFDQM 554
            +A  Q+
Sbjct: 511 EYAAQQL 517



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 172/364 (47%), Gaps = 42/364 (11%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQII---------VQNLTHVP 69
           +++N++L  V+  P       LL+ C  L+ + +   +H Q+          VQN     
Sbjct: 106 MYSNMQLARVS--PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN----- 158

Query: 70  PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
              LIA Y        A ++ + +     ++  W A++    +   P  A  +F QM + 
Sbjct: 159 --GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
              PD      VL A   L   + G S+HA +   G +    +  +L  MYA+C  ++ A
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           + LFD+M  P   +++ WN +++ YA++G A   + +F  M  +  V+ D +S+ +A+SA
Sbjct: 277 KILFDKMKSP---NLILWNAMISGYAKNGYAREAIDMFHEMI-NKDVRPDTISITSAISA 332

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKK 305
           CA         Q G +E+A+ ++E +       DV   +A++  +++ GS E A  +F +
Sbjct: 333 CA---------QVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
               +V    V WSA+I GY   G   EA+ ++R M+  G+ PN VT + LL  C   G 
Sbjct: 384 TLDRDV----VVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 366 LLLG 369
           +  G
Sbjct: 440 VREG 443


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/683 (38%), Positives = 391/683 (57%), Gaps = 43/683 (6%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           ++F  N ++  YAR   L  AR LFD M +    D+VSWN +++ Y +SG  +    +F 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEK---DVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 229 RMTGDVKVQGDGV--------SLVNALSACASLGTWSR-GKQC--------GMMEEAKKV 271
           RM     +  +G+         L  A     S   W      C         M+ +A+++
Sbjct: 151 RMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQL 210

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+++ V+D++SWN M++GY++ G    A  LF    +E+   +V TW+A++  Y Q G  
Sbjct: 211 FDQIPVRDLISWNTMISGYAQDGDLSQARRLF----EESPVRDVFTWTAMVYAYVQDGML 266

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            EA  VF +M     +   ++   +++G A    + +G+E         L  +   P+ +
Sbjct: 267 DEARRVFDEMP----QKREMSYNVMIAGYAQYKRMDMGRE---------LFEEMPFPN-I 312

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
              N +I  Y +   +  AR +FD +    RD  +W  +I  Y+QNG   +A+ +  +M 
Sbjct: 313 GSWNIMISGYCQNGDLAQARNLFDMMP--QRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK 370

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +  + +  N  T  CAL ACA +AAL  G+Q+H  V+R  YE     V N L+ MY + G
Sbjct: 371 RDGESL--NRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGC-LVGNALVGMYCKCG 427

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ID A  VF  ++ +++VSW +++ GY  HG G +A   F+ M   G+ PD +T + +L 
Sbjct: 428 CIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLS 487

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSH+G+ D+G +YF SM+K++GI+  ++HYAC++DLLGRA  L+EA  LI  MP EP  
Sbjct: 488 ACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDA 547

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
             W ALL   RIH N+ELGE AA  + ++E    G Y LLSN+YA +GRW DV+++R  M
Sbjct: 548 ATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKM 607

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
           +  GV+K PG SWV+ +    TF VGD  HP+  +IY  L  L  ++K  GYV  T   L
Sbjct: 608 RQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVL 667

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           HDV++EEK  +L  HSEKLA+A+GILT   G PIR+ KNLR+C DCH+AI  IS I+   
Sbjct: 668 HDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRL 727

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           II+RDS+R+HHF EG C+C+ YW
Sbjct: 728 IIVRDSHRYHHFSEGICSCRDYW 750



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 224/477 (46%), Gaps = 62/477 (12%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA---CGELPSSRCGSS 156
           V  WNA++   VR    D A  +F +M     H +  ++  +L A    G L  +R    
Sbjct: 126 VVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISWNGLLAAYVRSGRLEEAR---- 177

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
               +  S  D  +  CN LM  Y + + L  ARQLFD   Q  + D++SWNT+++ YAQ
Sbjct: 178 ---RLFESKSDWELISCNCLMGGYVKRNMLGDARQLFD---QIPVRDLISWNTMISGYAQ 231

Query: 217 SGDAEGGLMLFAR--------------------MTGDVKVQGDGVSLVNALSACASLGTW 256
            GD      LF                      M  + +   D +     +S    +  +
Sbjct: 232 DGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGY 291

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           ++ K+   M+  +++FE M   ++ SWN M++GY + G    A  LF  M Q     + V
Sbjct: 292 AQYKR---MDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQR----DSV 344

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+A+IAGYAQ G   EA+++  +M+  G   N  T    LS CA + AL LGK+ H   
Sbjct: 345 SWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQV 404

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           ++        +    +V NAL+ MY KC  +D A  +F  +  +++D+ +W  M+  Y++
Sbjct: 405 VRT------GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV--QHKDIVSWNTMLAGYAR 456

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G    AL +F  M      VKP+  T+   L AC+       G + + + +   Y  + 
Sbjct: 457 HGFGRQALTVFESMITAG--VKPDEITMVGVLSACSHTGLTDRGTE-YFHSMNKDYG-IT 512

Query: 497 PFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKA 547
           P   +  C+ID+  R+G ++ A+ +  N+  + +  +W +L+    +HG   LG++A
Sbjct: 513 PNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQA 569



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 206/430 (47%), Gaps = 51/430 (11%)

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D + L N++S  A +  + R  +  +   A+ +F++M  KD+ SWN M+TGY+R     D
Sbjct: 57  DAMPLRNSVSYNAMISGYLRNAKFSL---ARDLFDKMPHKDLFSWNLMLTGYARNRRLRD 113

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF  M ++    +VV+W+A+++GY + GH  EA DVF +M       N ++   LL+
Sbjct: 114 ARMLFDSMPEK----DVVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISWNGLLA 165

Query: 359 GCASVGALLLGKE------------THCYT---IKRVLSVDGSH------PDDLMVINAL 397
                G L   +              +C     +KR +  D           DL+  N +
Sbjct: 166 AYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTM 225

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I  YA+   +  AR +F+  +P  RDV TWT M+ +Y Q+G  ++A  +F +M Q+ ++ 
Sbjct: 226 ISGYAQDGDLSQARRLFEE-SPV-RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREM- 282

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDT 515
                + +  +   A+   +  GR++         EM  P +   N +I  Y ++GD+  
Sbjct: 283 -----SYNVMIAGYAQYKRMDMGRELFE-------EMPFPNIGSWNIMISGYCQNGDLAQ 330

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR +FD + QR+ VSW +++ GY  +GL ++A     +M+++G + +  TF   L AC+ 
Sbjct: 331 ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACAD 390

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
              ++ G +    + +  G          +V +  +   +DEA ++ +G+  +   + W 
Sbjct: 391 IAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI-VSWN 448

Query: 636 ALLNGCRIHA 645
            +L G   H 
Sbjct: 449 TMLAGYARHG 458



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 25/291 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I+ Y  +   + A +L   + P   SV W  A+I    +  L + A  + ++M R G  
Sbjct: 318 MISGYCQNGDLAQARNLFD-MMPQRDSVSW-AAIIAGYAQNGLYEEAMNMLVEMKRDGES 375

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            +  TF   L AC ++ +   G  VH  +  +G++    V NAL+ MY +C  +  A  +
Sbjct: 376 LNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDV 435

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  +      DIVSWNT++A YA+ G     L +F  M     V+ D +++V  LSAC+ 
Sbjct: 436 FQGVQHK---DIVSWNTMLAGYARHGFGRQALTVFESMI-TAGVKPDEITMVGVLSACSH 491

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA-----MVTGYSRIGSFEDAFALFKKMR 307
            G   RG +          F  M     ++ N+     M+    R G  E+A  L + M 
Sbjct: 492 TGLTDRGTE---------YFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMP 542

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
            E    +  TW A++   A R HG+  L          +EP+   +  LLS
Sbjct: 543 FEP---DAATWGALLG--ASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLS 588



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 147/341 (43%), Gaps = 55/341 (16%)

Query: 59  QIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPD 117
           QI V++L  +  + +I+ Y      S A  L +    SP   VF W A++   V+  + D
Sbjct: 213 QIPVRDL--ISWNTMISGYAQDGDLSQARRLFEE---SPVRDVFTWTAMVYAYVQDGMLD 267

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            A R+F +M ++     E ++  ++    +      G  +   +       N+   N ++
Sbjct: 268 EARRVFDEMPQK----REMSYNVMIAGYAQYKRMDMGRELFEEMPF----PNIGSWNIMI 319

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
           + Y +   L+ AR LFD M Q    D VSW  I+A YAQ+G  E  + +       V+++
Sbjct: 320 SGYCQNGDLAQARNLFDMMPQR---DSVSWAAIIAGYAQNGLYEEAMNML------VEMK 370

Query: 238 GDGVSLVN-----ALSACASLGTWSRGKQ--------------------------CGMME 266
            DG SL       ALSACA +     GKQ                          CG ++
Sbjct: 371 RDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCID 430

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           EA  VF+ ++ KD+VSWN M+ GY+R G    A  +F+ M    VK + +T   V++  +
Sbjct: 431 EAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACS 490

Query: 327 QRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGAL 366
             G      + F  M +  G+ PN      ++      G L
Sbjct: 491 HTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCL 531


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/733 (36%), Positives = 405/733 (55%), Gaps = 25/733 (3%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN++     +    + +FR+F  M R     +  T   +L   G +   + G  +H ++ 
Sbjct: 319  WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVV 378

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              GFDS V VCN L+ MYA       A  +F +M      D++SWN+++A++   G +  
Sbjct: 379  KMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK---DLISWNSLMASFVNDGRSLD 435

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             L L   M    K   + V+  +AL+AC +   + +G+    +     +F    +     
Sbjct: 436  ALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIG---- 490

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             NA+V+ Y +IG   ++  +  +M + +V    V W+A+I GYA+     +AL  F+ M+
Sbjct: 491  -NALVSMYGKIGEMSESRRVLLQMPRRDV----VAWNALIGGYAEDEDPDKALAAFQTMR 545

Query: 343  FCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+  N +T+VS+LS C   G LL  GK  H Y       V      D  V N+LI MY
Sbjct: 546  VEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI------VSAGFESDEHVKNSLITMY 599

Query: 402  AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            AKC  +  ++ +F+ +   NR++ TW  M+ + + +G   + L L  +M  +   V  + 
Sbjct: 600  AKCGDLSSSQDLFNGL--DNRNIITWNAMLAANAHHGHGEEVLKLVSKM--RSFGVSLDQ 655

Query: 462  FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            F+ S  L A A+LA L  G+Q+H   ++  +E    F+ N   DMYS+ G+I     +  
Sbjct: 656  FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEH-DSFIFNAAADMYSKCGEIGEVVKMLP 714

Query: 522  NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
                R++ SW  L++  G HG  ++    F +M + G+ P  VTF+ LL ACSH G+VD+
Sbjct: 715  PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 774

Query: 582  GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
            GL Y+D ++++FG+    EH  C++DLLGR+ RL EA   I  MPM+P  ++W +LL  C
Sbjct: 775  GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 834

Query: 642  RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
            +IH N++ G  AA  L +LE E D  Y L SN++A  GRW+DV  +R  M    +KK+  
Sbjct: 835  KIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 894

Query: 702  CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            CSWV+ K+  ++F +GDRTHPQ+ +IY  L  + + IK  GYV  TS AL D D+E+K  
Sbjct: 895  CSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEH 954

Query: 762  LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
             L+ HSE+LALAY +++T  G+ +RI KNLRIC DCHS   F+S +I   I+LRD  RFH
Sbjct: 955  NLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFH 1014

Query: 822  HFKEGSCTCKGYW 834
            HF+ G C+CK YW
Sbjct: 1015 HFERGLCSCKDYW 1027



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 163/678 (24%), Positives = 282/678 (41%), Gaps = 99/678 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y       PA  L   I P    V W N ++   VR+ L       F +M   G  
Sbjct: 113 LINMYTKFGRVKPARHLFD-IMPVRNEVSW-NTMMSGIVRVGLYLEGMEFFRKMCDLGIK 170

Query: 133 PDEYTFPFVLKACGELPSS-RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           P  +    ++ ACG   S  R G  VH  +  SG  S+V+V  A++ +Y     +S +R+
Sbjct: 171 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 230

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA------RMTGDVKVQGDGVSLVN 245
           +F+EM      ++VSW +++  Y+  G+ E  + ++       ++ G V   G    L  
Sbjct: 231 VFEEMPDR---NVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAV 287

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
             S  + LG+       G ++ A  +F++M  +D +SWN++   Y++ G  E++F +F  
Sbjct: 288 ENSLISMLGS------MGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSL 341

Query: 306 MRQENVKLNVVT---------------WSAVIAG--------------------YAQRGH 330
           MR+ + ++N  T               W   I G                    YA  G 
Sbjct: 342 MRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR 401

Query: 331 GHEALDVFRQMQ--------------------------FC-----GLEPNVVTLVSLLSG 359
             EA  VF+QM                            C     G   N VT  S L+ 
Sbjct: 402 SVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAA 461

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C +      G+  H   +     V G   + + + NAL+ MY K   +  +R +   +  
Sbjct: 462 CFTPDFFEKGRILHGLVV-----VSGLFYNQI-IGNALVSMYGKIGEMSESRRVL--LQM 513

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA-ALR 478
             RDV  W  +IG Y+++   + ALA F  M  +   V  N  T+   L AC      L 
Sbjct: 514 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEG--VSSNYITVVSVLSACLLPGDLLE 571

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            G+ +HAY++   +E     V N LI MY++ GD+ +++ +F+ L  RN+++W +++   
Sbjct: 572 RGKPLHAYIVSAGFES-DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN 630

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
             HG G++      +MR  G++ D  +F   L A +   ++++G +    ++ + G    
Sbjct: 631 AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEG-QQLHGLAVKLGFEHD 689

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
           +  +    D+  +   + E V+++        P  W  L++    H   E      + +L
Sbjct: 690 SFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLP-SWNILISALGRHGYFEEVCATFHEML 748

Query: 659 ELESEKDGSYTLLSNIYA 676
           E+   K G  T +S + A
Sbjct: 749 EM-GIKPGHVTFVSLLTA 765



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 145/588 (24%), Positives = 247/588 (42%), Gaps = 90/588 (15%)

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           W+P+   F  +     ++     G +VHA+        +V   N L+ MY +   +  AR
Sbjct: 70  WNPEISCFDQI--GFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPAR 127

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD M    + + VSWNT+++   + G    G+  F +M  D+ ++     + + ++AC
Sbjct: 128 HLFDIM---PVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMC-DLGIKPSSFVIASLVTAC 183

Query: 251 ASLGTWSR-GKQC--------------------------GMMEEAKKVFERMKVKDVVSW 283
              G+  R G Q                           G++  ++KVFE M  ++VVSW
Sbjct: 184 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSW 243

Query: 284 NAMVTGYSRIGSFEDAFALFK-------------------KMRQENVKL----------- 313
            +++ GYS  G  E+   ++K                   K+  EN  +           
Sbjct: 244 TSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDY 303

Query: 314 -----------NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
                      + ++W+++ A YAQ GH  E+  +F  M+    E N  T+ +LLS    
Sbjct: 304 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 363

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           V     G+  H   +K  +  D      + V N L+ MYA       A ++F  +  K  
Sbjct: 364 VDHQKWGRGIHGLVVK--MGFDSV----VCVCNTLLRMYAGAGRSVEANLVFKQMPTK-- 415

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           D+ +W  ++ S+  +G + DAL L   M    K V  N  T + AL AC        GR 
Sbjct: 416 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV--NYVTFTSALAACFTPDFFEKGRI 473

Query: 483 IHAYVLRNQ--YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +H  V+ +   Y  +I    N L+ MY + G++  +R V   + +R+VV+W +L+ GY  
Sbjct: 474 LHGLVVVSGLFYNQII---GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAE 530

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
               DKA  AF  MR EG++ + +T + +L AC   G + +  K   +     G  +   
Sbjct: 531 DEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEH 590

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
               ++ +  +   L  + +L  G+      I W A+L     H + E
Sbjct: 591 VKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGHGE 637



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WNA++         +   +L  +M   G   D+++F   L A  +L     G  +H
Sbjct: 619 NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH 678

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQS 217
            +    GF+ + F+ NA   MY++C  +    +    M  P +   + SWN +++A  + 
Sbjct: 679 GLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVK----MLPPSVNRSLPSWNILISALGRH 734

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-----------------K 260
           G  E     F  M  ++ ++   V+ V+ L+AC+  G   +G                 +
Sbjct: 735 GYFEEVCATFHEML-EMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIE 793

Query: 261 QC----------GMMEEAKKVFERMKVK--DVVSWNAMVTGYSRIGSFE---DAFALFKK 305
            C          G + EA+    +M +K  D+V W +++      G+ +    A     K
Sbjct: 794 HCICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGRKAAENLSK 852

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVG 364
           +  E+  + V++ +     +A  G   +  +V +QM F  + +    + V L    +S G
Sbjct: 853 LEPEDDSVYVLSSNM----FATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFG 908

Query: 365 ALLLGKETHCYTIK 378
              +G  TH  T++
Sbjct: 909 ---IGDRTHPQTME 919


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/833 (33%), Positives = 437/833 (52%), Gaps = 112/833 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           ++F WNAL+   VR  L D A   FL+++    + PD +TFP ++KAC        G SV
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H +    G   ++FV NA++A+Y +C  L  A +LFD+M +    +++SWN+++  ++++
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQ---NLISWNSLIRGFSEN 289

Query: 218 GDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRG---------------- 259
           G        F  +  +GD  +  D  ++V  L  C+  G    G                
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIP-DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHEL 348

Query: 260 ----------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK--MR 307
                      +CG + EA  +F +++ K VVSWN+M+  YSR G   + F L +K  M 
Sbjct: 349 MVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWME 408

Query: 308 QENVKLNVVTW-----------------------------------SAVIAGYAQRGH-- 330
           +E +++N VT                                    +A IA YA+ G   
Sbjct: 409 EELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLV 468

Query: 331 ----------------------GH-------EALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
                                 GH       +ALD + +M   G+ P+  ++VSLL  C 
Sbjct: 469 FAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACG 528

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +G L  GKE H + ++  L ++        V  +L+ +Y  C      R  F+ +  KN
Sbjct: 529 RLGLLQYGKEIHGFVLRNGLEMNS------FVAVSLLSLYFHCSKPFYGRTYFERMGDKN 582

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
                W  M+  YSQN   N+AL+LF QM      ++P+   ++  L AC++L+AL  G+
Sbjct: 583 S--VCWNAMLSGYSQNELPNEALSLFRQMLSDG--LEPDEIAIASILGACSQLSALGLGK 638

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           ++H + L+N   M   FVA  L+DMY++SG +  ++ +F+ L  + V SW  ++TG+G+H
Sbjct: 639 EVHCFALKNSL-MEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G G+KA   F+ M++    PD  TFL +L AC H+G+V +GL Y   M   + +    EH
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEH 757

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YAC++D+LGRA RL+EA+  I  MP EP   IW +LL+    + ++E+GE  A +LL LE
Sbjct: 758 YACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALE 817

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
           + K  SY LLSN+YA AG+W  V  +R  MK   ++K  GCSW++ +    +F  G+ ++
Sbjct: 818 ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSN 877

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P S +I ++   L ++I  +GY P  S  LH++++ EK  +L  HSEK+A+ +G L T  
Sbjct: 878 PSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKE 937

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GT +RI+KNLRIC DCH+A  +IS     EI++RD+ RFHHFK+G C+C  YW
Sbjct: 938 GTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 250/537 (46%), Gaps = 52/537 (9%)

Query: 124 LQMMRRGWHPD--------EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           L  ++R W  +        +     +L+ CG+  +   G  +  ++C S   S  FV N 
Sbjct: 88  LDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNT 147

Query: 176 -LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
            L+ MY+ C     +R +FD +      ++  WN +V+ Y ++   +  +  F  +    
Sbjct: 148 RLITMYSICGYPLESRLVFDRLLNK---NLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           + Q D  +    + AC        GK    M     +     + D+   NAM+  Y + G
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGL-----IMDLFVGNAMIALYGKCG 259

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVT 352
             ++A  LF KM ++    N+++W+++I G+++ G   EA   FR +     GL P+V T
Sbjct: 260 FLDEAVELFDKMPEQ----NLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVAT 315

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           +V+LL  C+  G + +G   H   +K  L        +LMV NALIDMY+KC  +  A +
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGL------VHELMVCNALIDMYSKCGCLSEAAI 369

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  I  +N+ V +W  MIG+YS+ G   +   L  +M+ +++L++ N  T+   L AC 
Sbjct: 370 LFRKI--ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACL 427

Query: 473 RLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
             + L   R +H Y LR+  QY+ LI    N  I  Y++ G +  A  VF  +  ++V S
Sbjct: 428 EESELLSLRALHGYSLRHSFQYKELIN---NAFIAAYAKCGSLVFAEHVFFGMNTKSVSS 484

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG-------L 583
           W +++ G+  +G   KA   + +M + G+ PD  + + LL AC   G++  G       L
Sbjct: 485 WNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVL 544

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +    M+    +S  + ++ C     GR           E M  +   + W A+L+G
Sbjct: 545 RNGLEMNSFVAVSLLSLYFHCSKPFYGRT--------YFERMG-DKNSVCWNAMLSG 592


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/654 (38%), Positives = 392/654 (59%), Gaps = 36/654 (5%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVN 245
           A ++FD+M +    ++V+W  ++  +AQ G A   + LF     D+++ G   D  +  +
Sbjct: 4   AYKVFDKMPER---NLVTWTLMITRFAQLGCARDAIDLFL----DMELSGYVPDRFTYSS 56

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI---GSFEDAFAL 302
            LSAC  LG  + GKQ        +V       DV    ++V  Y++    GS +D+  +
Sbjct: 57  VLSACTELGLLALGKQL-----HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 111

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           F++M + NV    ++W+A+I  YAQ G    EA+++F +M    + PN  +  S+L  C 
Sbjct: 112 FEQMPEHNV----MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG 167

Query: 362 SVGALLLGKETHCYTIK-RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           ++     G++ + Y +K  + SV+        V N+LI MYA+   ++ AR  FD +  K
Sbjct: 168 NLSDPYTGEQVYSYAVKLGIASVN-------CVGNSLISMYARSGRMEDARKAFDILFEK 220

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           N  + ++  ++  Y++N  + +A  LF ++   D  +  +AFT +  L   A + A+  G
Sbjct: 221 N--LVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGIGISAFTFASLLSGAASIGAMGKG 276

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
            QIH  +L+  Y+     + N LI MYSR G+I+ A  VF+ ++ RNV+SWTS++TG+  
Sbjct: 277 EQIHGRLLKGGYKS-NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 335

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG   +A   F +M + G  P+ +T++ +L ACSH GM+ +G K+F+SM KE GI  R E
Sbjct: 336 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 395

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HYAC+VDLLGR+  L EA+E I  MP+    ++W  LL  CR+H N ELG  AA  +LE 
Sbjct: 396 HYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 455

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           E +   +Y LLSN++A+AG+WKDV +IR  MK   + K  GCSW++ +     F VG+ +
Sbjct: 456 EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETS 515

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HPQ+ +IY+ L  L  +IK MGY+P T F LHD+++E+K   LF+HSEK+A+A+G+++T+
Sbjct: 516 HPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTS 575

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              PIRI KNLR+CGDCH+AI +ISM    EI++RDSNRFHH K G C+C  YW
Sbjct: 576 QSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 252/495 (50%), Gaps = 38/495 (7%)

Query: 84  SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           +PA  +  ++     ++  W  +I R  +L    +A  LFL M   G+ PD +T+  VL 
Sbjct: 2   APAYKVFDKMPER--NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 59

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC---DTLSYARQLFDEMFQPG 200
           AC EL     G  +H+ +   G   +V V  +L+ MYA+C    ++  +R++F++M +  
Sbjct: 60  ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH- 118

Query: 201 ICDIVSWNTIVAAYAQSGDAEG-GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
             +++SW  I+ AYAQSG+ +   + LF +M     ++ +  S  + L AC +L     G
Sbjct: 119 --NVMSWTAIITAYAQSGECDKEAIELFCKMISG-HIRPNHFSFSSVLKACGNLSDPYTG 175

Query: 260 KQCGMMEEAKKVFERMKVKDV-VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
                 E+      ++ +  V    N++++ Y+R G  EDA   F  + ++N    +V++
Sbjct: 176 ------EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN----LVSY 225

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A++ GYA+     EA  +F ++   G+  +  T  SLLSG AS+GA+  G++ H   +K
Sbjct: 226 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 285

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                 G +  +  + NALI MY++C +++ A  +F+ +  ++R+V +WT MI  ++++G
Sbjct: 286 ------GGYKSNQCICNALISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITGFAKHG 337

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            A  AL +F +M +     KPN  T    L AC+ +  +  G Q H   +  ++  ++P 
Sbjct: 338 FATRALEMFHKMLETG--TKPNEITYVAVLSACSHVGMISEG-QKHFNSMYKEHG-IVPR 393

Query: 499 VAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           + +  C++D+  RSG +  A    +++    + + W +L+    +HG  +    A + + 
Sbjct: 394 MEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMIL 453

Query: 556 KEGLAPDGVTFLVLL 570
           ++   PD     +LL
Sbjct: 454 EQ--EPDDPAAYILL 466



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 15/257 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NA++    +    + AF LF ++   G     +TF  +L     + +   G  +H  + 
Sbjct: 225 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 284

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+ SN  +CNAL++MY+RC  +  A Q+F+EM      +++SW +++  +A+ G A  
Sbjct: 285 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR---NVISWTSMITGFAKHGFATR 341

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDVV 281
            L +F +M  +   + + ++ V  LSAC+ +G  S G K    M +   +  RM+     
Sbjct: 342 ALEMFHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME----- 395

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            +  MV    R G   +A      M    +  + + W  ++   A R HG+  L      
Sbjct: 396 HYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTLLG--ACRVHGNTELGRHAAE 450

Query: 342 QFCGLEPNVVTLVSLLS 358
                EP+      LLS
Sbjct: 451 MILEQEPDDPAAYILLS 467


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 289/734 (39%), Positives = 416/734 (56%), Gaps = 33/734 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN ++    +  L D A  L+ +MM  G  PD YTFP VL++CG +P  R G  VHA
Sbjct: 154 VFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHA 213

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF   V V NALM MYA+C  +  AR++FD M    + D +SWN ++A + ++G+
Sbjct: 214 HVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSM---TVMDCISWNAMIAGHFENGE 270

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
              GL LF  M  D +VQ + +++ +   A   L   +  K     E      +R    D
Sbjct: 271 CNAGLELFLTMLHD-EVQPNLMTITSVTVASGLLSDVTFAK-----EMHGLAVKRGFAGD 324

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   N+++  Y+ +G    A  +F +M   +     +TW+A+I+GY + G   +AL+V+ 
Sbjct: 325 VAFCNSLIQMYASLGMMRQARTVFSRMDTRDA----MTWTAMISGYEKNGFPDKALEVYA 380

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+   + P+ +T+ S L+ CA +G+L +G + H       L+        ++V NA+++
Sbjct: 381 LMEVNNVSPDDITIASALAACACLGSLDVGVKLH------ELAESKGFISYIVVTNAILE 434

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAK K +D A  +F  +  K  DV +W+ MI  +  N    +AL  F  M      VKP
Sbjct: 435 MYAKSKRIDKAIEVFKCMHEK--DVVSWSSMIAGFCFNHRNFEALYYFRHMLAD---VKP 489

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTAR 517
           N+ T   AL ACA   ALR G++IHA+VLR   +YE  +P   N LID+Y + G    A 
Sbjct: 490 NSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLP---NALIDLYVKCGQTGYAW 546

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             F     ++VVSW  ++ G+  HG GD A   F+QM K G  PD VTF+ LL ACS  G
Sbjct: 547 AQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGG 606

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           MV +G + F SM++++ I    +HYAC+VDLL RA +L EA   I  MP+ P   +W AL
Sbjct: 607 MVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGAL 666

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           LNGCRIH +VELGELAA  +L LE    G + LL ++YA+A  W  +AR+R  M+  G+ 
Sbjct: 667 LNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLD 726

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
              GCSWV+ K     F   D +HPQ ++I  +L G+ +R+KA GY P  S   H  +DE
Sbjct: 727 HDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGYAPVES---HCPEDE 783

Query: 758 E-KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
             K D+   HSE+LA+A+G++ T PGT I +TKN   C  CH  +  IS I+  +II+RD
Sbjct: 784 VLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKMISNIVRRDIIVRD 843

Query: 817 SNRFHHFKEGSCTC 830
           S + HHFK+GSC+C
Sbjct: 844 SKQLHHFKDGSCSC 857



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NAM++   R G    A+ +F KM + +V     +W+ ++ GY + G   EALD++ +M +
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDV----FSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+V T   +L  C  V    +G+E H + ++          +++ V+NAL+ MYAK
Sbjct: 183 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFG------EEVDVLNALMTMYAK 236

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V  AR +FD++     D  +W  MI  + +NG  N  L LF  M   +  V+PN  T
Sbjct: 237 CGDVMAARKVFDSMTVM--DCISWNAMIAGHFENGECNAGLELFLTMLHDE--VQPNLMT 292

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++   +A   L+ + F +++H   ++  +   + F  N LI MY+  G +  AR VF  +
Sbjct: 293 ITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAF-CNSLIQMYASLGMMRQARTVFSRM 351

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
             R+ ++WT++++GY  +G  DKA   +  M    ++PD +T    L AC+  G +D G+
Sbjct: 352 DTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGV 411

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CR 642
           K  + +++  G  +       I+++  ++ R+D+A+E+ + M  E   + W +++ G C 
Sbjct: 412 KLHE-LAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCM-HEKDVVSWSSMIAGFCF 469

Query: 643 IHANVE 648
            H N E
Sbjct: 470 NHRNFE 475



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N ++ M  R G+   A  VF  + +R+V SW  ++ GYG  GL D+A   + +M   G
Sbjct: 125 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAG 184

Query: 559 LAPDGVTFLVLLYAC 573
           + PD  TF  +L +C
Sbjct: 185 VRPDVYTFPCVLRSC 199


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 285/745 (38%), Positives = 426/745 (57%), Gaps = 31/745 (4%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRC 153
           P+P  +  +NALIR A  LR P  A RL+  + RR    P+ YTFPFVLKAC  L   R 
Sbjct: 90  PAP-GIHDYNALIR-AYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRS 147

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
             +VH     +G  +++FV  AL+ +YA+C +  +A  +F  M  P   D+V+WN ++A 
Sbjct: 148 ARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM--PAR-DVVAWNAMLAG 204

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           YA  G     +     M  D     +  +LV  L   A  G  S+G+   +   + +   
Sbjct: 205 YALHGKYSDTIACLLLMQDDHA--PNASTLVALLPLLAQHGALSQGR--AVHAYSVRACS 260

Query: 274 RMKVKD-VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
               KD V+   A++  Y++ G    A  +F+ M   N     VTWSA++ G+   G   
Sbjct: 261 LHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNE----VTWSALVGGFVLCGRML 316

Query: 333 EALDVFRQM---QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
           EA  +F+ M     C L P  V   S L  CA++  L LGK+ H      +L+  G H D
Sbjct: 317 EAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHA-----LLAKSGLHTD 369

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            L   N+L+ MYAK   +D A  +FD +  K  D  +++ ++  Y QNG A++A  +F +
Sbjct: 370 -LTAGNSLLSMYAKAGLIDQATTLFDQMVVK--DTVSYSALVSGYVQNGKADEAFRVFRK 426

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M  Q   V+P+  T+   + AC+ LAAL+ G+  H  V+          + N LIDMY++
Sbjct: 427 M--QACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETS-ICNALIDMYAK 483

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G ID +R +FD +  R++VSW +++ GYG+HGLG +A   F  M+ +   PD VTF+ L
Sbjct: 484 CGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICL 543

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           + ACSHSG+V +G ++F  M+ ++GI+ R EHY  +VDLL R   LDEA + I+GMP++ 
Sbjct: 544 ISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKA 603

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
              +W ALL  CR+H N++LG+  ++ + +L  E  G++ LLSNI++ AGR+ + A +R 
Sbjct: 604 DVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRI 663

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           + K  G KK PGCSW++       F  GDR+H QS +IY+ L  ++  I  +GY   TSF
Sbjct: 664 IQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSF 723

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
            L DV++EEK   L  HSEKLA+A+G+LT +    I +TKNLR+CGDCH+ I +++++  
Sbjct: 724 VLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRK 783

Query: 810 HEIILRDSNRFHHFKEGSCTCKGYW 834
             II+RD+NRFHHFK G C+C  +W
Sbjct: 784 RAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 146/548 (26%), Positives = 249/548 (45%), Gaps = 82/548 (14%)

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           C  LS AR LFD++  PGI D   +N ++ AY+  G A    +  +     +  Q +  +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHD---YNALIRAYSLRGPALALRLYRSLRRRRLP-QPNNYT 131

Query: 243 LVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMK 276
               L AC++L      +                          +C     A  VF RM 
Sbjct: 132 FPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMP 191

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            +DVV+WNAM+ GY+  G + D  A    M+ ++                          
Sbjct: 192 ARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHA------------------------- 226

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
                      PN  TLV+LL   A  GAL  G+  H Y+++     D  H D ++V  A
Sbjct: 227 -----------PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHD--HKDGVLVGTA 273

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMYAKC  +  A  +F+A+A +N    TW+ ++G +   G   +A +LF  M  Q  L
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNE--VTWSALVGGFVLCGRMLEAFSLFKDMLAQG-L 330

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
              +  +++ AL ACA L+ L  G+Q+HA + ++     +    N L+ MY+++G ID A
Sbjct: 331 CFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLT-AGNSLLSMYAKAGLIDQA 389

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +FD +  ++ VS+++L++GY  +G  D+A   F +M+   + PD  T + L+ ACSH 
Sbjct: 390 TTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHL 449

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             +  G     S+    GI++       ++D+  +  R+D + ++ + MP     + W  
Sbjct: 450 AALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDI-VSWNT 507

Query: 637 LLNGCRIHANVELGELAANRLLELESE----KDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           ++ G  IH    LG+ A    L+++ +     D ++  L +  +++G   +  R   +M 
Sbjct: 508 MIAGYGIHG---LGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMA 564

Query: 693 HT-GVKKR 699
           H  G+  R
Sbjct: 565 HKYGITPR 572


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/654 (38%), Positives = 392/654 (59%), Gaps = 36/654 (5%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVN 245
           A ++FD+M +    ++V+W  ++  +AQ G A   + LF     D+++ G   D  +  +
Sbjct: 9   AYKVFDKMPER---NLVTWTLMITRFAQLGCARDAIDLFL----DMELSGYVPDRFTYSS 61

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI---GSFEDAFAL 302
            LSAC  LG  + GKQ        +V       DV    ++V  Y++    GS +D+  +
Sbjct: 62  VLSACTELGLLALGKQL-----HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 116

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           F++M + NV    ++W+A+I  YAQ G    EA+++F +M    + PN  +  S+L  C 
Sbjct: 117 FEQMPEHNV----MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG 172

Query: 362 SVGALLLGKETHCYTIK-RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           ++     G++ + Y +K  + SV+        V N+LI MYA+   ++ AR  FD +  K
Sbjct: 173 NLSDPYTGEQVYSYAVKLGIASVN-------CVGNSLISMYARSGRMEDARKAFDILFEK 225

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           N  + ++  ++  Y++N  + +A  LF ++   D  +  +AFT +  L   A + A+  G
Sbjct: 226 N--LVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGIGISAFTFASLLSGAASIGAMGKG 281

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
            QIH  +L+  Y+     + N LI MYSR G+I+ A  VF+ ++ RNV+SWTS++TG+  
Sbjct: 282 EQIHGRLLKGGYKS-NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 340

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG   +A   F +M + G  P+ +T++ +L ACSH GM+ +G K+F+SM KE GI  R E
Sbjct: 341 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 400

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HYAC+VDLLGR+  L EA+E I  MP+    ++W  LL  CR+H N ELG  AA  +LE 
Sbjct: 401 HYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 460

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           E +   +Y LLSN++A+AG+WKDV +IR  MK   + K  GCSW++ +     F VG+ +
Sbjct: 461 EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETS 520

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HPQ+ +IY+ L  L  +IK MGY+P T F LHD+++E+K   LF+HSEK+A+A+G+++T+
Sbjct: 521 HPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTS 580

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              PIRI KNLR+CGDCH+AI +ISM    EI++RDSNRFHH K G C+C  YW
Sbjct: 581 QSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 244/476 (51%), Gaps = 36/476 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I R  +L    +A  LFL M   G+ PD +T+  VL AC EL     G  +H+ + 
Sbjct: 24  WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 83

Query: 163 SSGFDSNVFVCNALMAMYARC---DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
             G   +V V  +L+ MYA+C    ++  +R++F++M +    +++SW  I+ AYAQSG+
Sbjct: 84  RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH---NVMSWTAIITAYAQSGE 140

Query: 220 AEG-GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            +   + LF +M     ++ +  S  + L AC +L     G      E+      ++ + 
Sbjct: 141 CDKEAIELFCKMISG-HIRPNHFSFSSVLKACGNLSDPYTG------EQVYSYAVKLGIA 193

Query: 279 DV-VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            V    N++++ Y+R G  EDA   F  + ++N    +V+++A++ GYA+     EA  +
Sbjct: 194 SVNCVGNSLISMYARSGRMEDARKAFDILFEKN----LVSYNAIVDGYAKNLKSEEAFLL 249

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F ++   G+  +  T  SLLSG AS+GA+  G++ H   +K      G +  +  + NAL
Sbjct: 250 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK------GGYKSNQCICNAL 303

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY++C +++ A  +F+ +  ++R+V +WT MI  ++++G A  AL +F +M +     
Sbjct: 304 ISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLETG--T 359

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDT 515
           KPN  T    L AC+ +  +  G Q H   +  ++  ++P + +  C++D+  RSG +  
Sbjct: 360 KPNEITYVAVLSACSHVGMISEG-QKHFNSMYKEHG-IVPRMEHYACMVDLLGRSGLLVE 417

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           A    +++    + + W +L+    +HG  +    A + + ++   PD     +LL
Sbjct: 418 AMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAYILL 471



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 15/257 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NA++    +    + AF LF ++   G     +TF  +L     + +   G  +H  + 
Sbjct: 230 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 289

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+ SN  +CNAL++MY+RC  +  A Q+F+EM      +++SW +++  +A+ G A  
Sbjct: 290 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR---NVISWTSMITGFAKHGFATR 346

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDVV 281
            L +F +M  +   + + ++ V  LSAC+ +G  S G K    M +   +  RM+     
Sbjct: 347 ALEMFHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME----- 400

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            +  MV    R G   +A      M    +  + + W  ++   A R HG+  L      
Sbjct: 401 HYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTLLG--ACRVHGNTELGRHAAE 455

Query: 342 QFCGLEPNVVTLVSLLS 358
                EP+      LLS
Sbjct: 456 MILEQEPDDPAAYILLS 472


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 281/789 (35%), Positives = 416/789 (52%), Gaps = 105/789 (13%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSH-NAPSPALSLLQRISPSPFSVFWWNAL 106
           KS +Q   +H Q++    + +    L+ +  SH N    +L L   I   P     W ++
Sbjct: 20  KSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPP--ALAWKSV 77

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           IR      LP  +   F+ M+  G +PD   FP VLK+C  L     G S+H  I   G 
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE-GGLM 225
           D +++  NALM M        Y++  F E                    +SG    G   
Sbjct: 138 DFDLYTGNALMNM--------YSKLRFLE--------------------ESGRQRLGAGE 169

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           +F  MT   +     V  V+ LS                 +  +K+FE M  KD+VSW  
Sbjct: 170 VFDEMTERTR----SVRTVSVLSE----------------DSVRKIFEMMPEKDLVSW-- 207

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
                                            + +IAG A+ G   E L + R+M    
Sbjct: 208 ---------------------------------NTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L+P+  TL S+L   A    +  GKE H  +I++ L  D      + V ++LIDMYAKC 
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDAD------IYVASSLIDMYAKCT 288

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V  +  +F  +    RD  +W  +I    QNG  ++ L  F QM      +KP +++ S
Sbjct: 289 RVADSCRVFTLLT--ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK--IKPKSYSFS 344

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + ACA L  L  G+Q+H Y+ RN ++  I F+A+ L+DMY++ G+I TA+ +FD ++ 
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENI-FIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R++VSWT+++ G  +HG    A   F+QM  EG+         +L ACSH G+VD+  KY
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKY 456

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F+SM+++FGI+   EHYA + DLLGRA RL+EA + I GM + PT  IW  LL+ CR+H 
Sbjct: 457 FNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHK 516

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N+++ E  ANR+LE++    G+Y LL+NIY+ A RWK+ A+ R+ M+  G++K P CSW+
Sbjct: 517 NIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWI 576

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + K     F  GD +HP  +KI E +  LV+ ++  GYVP TS   HDV++E+K  L+  
Sbjct: 577 EVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCS 636

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+ +GI+ T  G  IR+TKNLR+C DCH+A  FIS I+  EI++RD++RFHHFK 
Sbjct: 637 HSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKN 696

Query: 826 GSCTCKGYW 834
           G+C+C  YW
Sbjct: 697 GTCSCGDYW 705


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/733 (38%), Positives = 414/733 (56%), Gaps = 49/733 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N+ I R  R+   ++A R+F +M      PD+    +     G   ++R   + +  + 
Sbjct: 19  YNSQIARYARIGQIESARRVFDEM------PDKGIVSWNSMVAGYFQNNRPREARY--LF 70

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + N    N L++ Y +   +S AR+ FD M +    ++VSW  +V  Y Q G    
Sbjct: 71  DKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPER---NVVSWTAMVRGYVQEGLVSE 127

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF +M              N +S    LG      Q   ++EA+ +F+ M VKDVV+
Sbjct: 128 AETLFWQMPEK-----------NVVSWTVMLGGLI---QVRRIDEARGLFDIMPVKDVVA 173

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              M++GY + G   +A  LF +M + NV    ++W+ +I+GY Q G     +DV R++ 
Sbjct: 174 RTNMISGYCQEGRLAEARELFDEMPRRNV----ISWTTMISGYVQNGQ----VDVARKLF 225

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
               E N V+  ++L G    G +    E            D      ++  NA+I  + 
Sbjct: 226 EVMPEKNEVSWTAMLMGYTQGGRIEEASEL----------FDAMPVKAVVACNAMILGFG 275

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +   V  AR +FD I  + +D  TW+ MI  Y + G   +AL LF  M  Q + V+ N  
Sbjct: 276 QNGEVAKARQVFDQI--REKDDGTWSAMIKVYERKGFEVEALNLFALM--QREGVQSNFP 331

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           +L   L  CA LA+L  GRQ+HA ++++Q++  + FVA+ LI MY + GD+  AR +FD 
Sbjct: 332 SLISVLSVCASLASLDHGRQVHAELVKSQFDSDV-FVASVLITMYVKCGDLVKARQIFDR 390

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
              +++V W S++TGY  HGL ++A   F +M   G+A DGVTF+ +L ACS++G V +G
Sbjct: 391 FSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEG 450

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L+ F+SM  ++ +  + EHYAC+VDLLGRA  +++A++LI+ MP+E   IIW ALL  CR
Sbjct: 451 LEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACR 510

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            H N+ L E+AA +LL+LE +  G Y LLSNIYA+ GRW DVA +R  M+   V K PGC
Sbjct: 511 THMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGC 570

Query: 703 SWVQGKEGTATFFVGDRT-HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           SW++ ++    F  G  T HP+   I ++L  L   ++  GY P +SF LHDVD+EEK  
Sbjct: 571 SWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVR 630

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+LA+A+G+L    G PIR+ KNLR+CGDCHSAI  I+ I   EIILRD+NRFH
Sbjct: 631 SLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFH 690

Query: 822 HFKEGSCTCKGYW 834
           HFK+G C+C+ YW
Sbjct: 691 HFKDGFCSCRDYW 703



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 10/150 (6%)

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
           +Y   +    N  I  Y+R G I++AR VFD +  + +VSW S++ GY  +    +A + 
Sbjct: 10  RYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYL 69

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           FD+M +     + V++  L+     + MV +  K FD+M +   +S     +  +V    
Sbjct: 70  FDKMPER----NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVS-----WTAMVRGYV 120

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +   + EA  L   MP E   + W  +L G
Sbjct: 121 QEGLVSEAETLFWQMP-EKNVVSWTVMLGG 149


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/740 (35%), Positives = 410/740 (55%), Gaps = 33/740 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  LI    R  L +    LF++M   G  P+ +TF   L    E      G  VH
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 221

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V+  +G D  + V N+L+ +Y +C  +  AR LFD   +  +  +V+WN++++ YA +G
Sbjct: 222 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFD---KTEVKSVVTWNSMISGYAANG 278

Query: 219 -DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK-KVFERMK 276
            D E   M ++     V++     S  + +  CA+L      K+    E+    V +   
Sbjct: 279 LDLEALGMFYSMRLNHVRLSES--SFASIIKLCANL------KELRFTEQLHCSVVKYGF 330

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           V D     A++  YS+  +  DA  LFK   +     NVV+W+A+I+G+ Q     EA+ 
Sbjct: 331 VFDQNIRTALMVAYSKCMAMLDALRLFK---ETGFLGNVVSWTAMISGFLQNDGKEEAVG 387

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F +M+  G+ PN  T   +L+    +       E H   +K       ++     V  A
Sbjct: 388 LFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKT------NYERSSTVGTA 437

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+D Y K   VD A  +F  I   N+D+  W+ M+  Y+Q G    A+ +F ++ +    
Sbjct: 438 LLDAYVKLGKVDEAAKVFSGI--DNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGG-- 493

Query: 457 VKPNAFTLSCALMACA-RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           VKPN FT S  L  CA   A++  G+Q H + ++++ +  +  V++ L+ MY++ G I++
Sbjct: 494 VKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLC-VSSALLTMYAKKGHIES 552

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A  VF   +++++VSW S+++GY  HG   KA   F +M+K  +  D VTF+ +  AC+H
Sbjct: 553 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTH 612

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +G+V++G KYFD M ++  I+   EH +C+VDL  RA +L++A+++I+ MP      IW 
Sbjct: 613 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWR 672

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            +L  CR+H   ELG LAA +++ +  E   +Y LLSN+YA +G W++ A++R LM    
Sbjct: 673 TILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERN 732

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           VKK PG SW++ K  T  F  GDR+HP   +IY  L  L  R+K +GY P TS+ L D+D
Sbjct: 733 VKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDID 792

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           DE K  +L +HSE+LA+A+G++ T  G+P+ I KNLR+CGDCH  I  I+ I   EI++R
Sbjct: 793 DEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVR 852

Query: 816 DSNRFHHF-KEGSCTCKGYW 834
           DSNRFHHF  +G C+C  +W
Sbjct: 853 DSNRFHHFSSDGVCSCGDFW 872



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 141/259 (54%), Gaps = 11/259 (4%)

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++++++ G+++ G   EA  +F  +Q  G+E +     S+L   A++   L G++ HC  
Sbjct: 64  SYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQC 123

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           IK          DD+ V  +L+D Y K  +    R +FD +  K R+V TWT +I  Y++
Sbjct: 124 IKF------GFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEM--KERNVVTWTTLISGYAR 175

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           N    + L LF +M  QD+  +PN+FT + AL   A       G Q+H  V++N  +  I
Sbjct: 176 NSLNEEVLTLFMRM--QDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 233

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           P V+N LI++Y + G++  AR++FD  + ++VV+W S+++GY  +GL  +A   F  MR 
Sbjct: 234 P-VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 292

Query: 557 EGLAPDGVTFLVLLYACSH 575
             +     +F  ++  C++
Sbjct: 293 NHVRLSESSFASIIKLCAN 311



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 177/379 (46%), Gaps = 59/379 (15%)

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
           ++ + VF+ MK ++VV+W  +++GY+R    E+   LF +M+ E  + N  T++A +   
Sbjct: 149 KDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVL 208

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           A+ G G   L V                                   H   +K  L  D 
Sbjct: 209 AEEGVGGRGLQV-----------------------------------HTVVVKNGL--DK 231

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
           + P    V N+LI++Y KC +V  AR++FD    K+  V TW  MI  Y+ NG   +AL 
Sbjct: 232 TIP----VSNSLINLYLKCGNVRKARILFDKTEVKS--VVTWNSMISGYAANGLDLEALG 285

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           +F  M  +   V+ +  + +  +  CA L  LRF  Q+H  V++  + +    +   L+ 
Sbjct: 286 MFYSM--RLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGF-VFDQNIRTALMV 342

Query: 506 MYSRS-GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            YS+    +D  R+  +     NVVSWT++++G+  +   ++A   F +M+++G+ P+  
Sbjct: 343 AYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEF 402

Query: 565 TFLVLLYA---CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           T+ V+L A    S S +  Q +K     S   G +        ++D   +  ++DEA ++
Sbjct: 403 TYSVILTALPVISPSEVHAQVVKTNYERSSTVGTA--------LLDAYVKLGKVDEAAKV 454

Query: 622 IEGMPMEPTPIIWVALLNG 640
             G+  +   + W A+L G
Sbjct: 455 FSGIDNKDI-VAWSAMLAG 472



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 5/175 (2%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A  +FD  +P +RD  ++T ++  +S++G   +A  LF  +  Q   ++ +    S  L 
Sbjct: 50  AHNLFDK-SP-DRDRESYTSLLFGFSRDGRTQEATRLFLNI--QHLGMEMDCSIFSSVLK 105

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
             A L    FGRQ+H   ++  +   +  V   L+D Y +  +    R VFD +K+RNVV
Sbjct: 106 VSATLCDELFGRQLHCQCIKFGFLDDVS-VGTSLVDTYMKGSNFKDGRNVFDEMKERNVV 164

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +WT+L++GY  + L ++    F +M+ EG  P+  TF   L   +  G+  +GL+
Sbjct: 165 TWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/733 (36%), Positives = 405/733 (55%), Gaps = 25/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++     +    + +FR+F  M R     +  T   +L   G +   + G  +H ++ 
Sbjct: 229 WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVV 288

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFDS V VCN L+ MYA       A  +F +M      D++SWN+++A++   G +  
Sbjct: 289 KMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK---DLISWNSLMASFVNDGRSLD 345

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L L   M    K   + V+  +AL+AC +   + +G+    +     +F    +     
Sbjct: 346 ALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIG---- 400

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA+V+ Y +IG   ++  +  +M + +V    V W+A+I GYA+     +AL  F+ M+
Sbjct: 401 -NALVSMYGKIGEMSESRRVLLQMPRRDV----VAWNALIGGYAEDEDPDKALAAFQTMR 455

Query: 343 FCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             G+  N +T+VS+LS C   G LL  GK  H Y       V      D  V N+LI MY
Sbjct: 456 VEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI------VSAGFESDEHVKNSLITMY 509

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC  +  ++ +F+ +   NR++ TW  M+ + + +G   + L L  +M  +   V  + 
Sbjct: 510 AKCGDLSSSQDLFNGL--DNRNIITWNAMLAANAHHGHGEEVLKLVSKM--RSFGVSLDQ 565

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F+ S  L A A+LA L  G+Q+H   ++  +E    F+ N   DMYS+ G+I     +  
Sbjct: 566 FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEH-DSFIFNAAADMYSKCGEIGEVVKMLP 624

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
               R++ SW  L++  G HG  ++    F +M + G+ P  VTF+ LL ACSH G+VD+
Sbjct: 625 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 684

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           GL Y+D ++++FG+    EH  C++DLLGR+ RL EA   I  MPM+P  ++W +LL  C
Sbjct: 685 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 744

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           +IH N++ G  AA  L +LE E D  Y L SN++A  GRW+DV  +R  M    +KK+  
Sbjct: 745 KIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 804

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSWV+ K+  ++F +GDRTHPQ+ +IY  L  + + IK  GYV  TS AL D D+E+K  
Sbjct: 805 CSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEH 864

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L+ HSE+LALAY +++T  G+ +RI KNLRIC DCHS   F+S +I   I+LRD  RFH
Sbjct: 865 NLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFH 924

Query: 822 HFKEGSCTCKGYW 834
           HF+ G C+CK YW
Sbjct: 925 HFERGLCSCKDYW 937



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 159/669 (23%), Positives = 280/669 (41%), Gaps = 114/669 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVI 161
           WN ++   VR+ L       F +M   G  P  +    ++ ACG   S  R G  VH  +
Sbjct: 26  WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFV 85

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             SG  S+V+V  A++ +Y     +S +R++F+EM      ++VSW +++  Y+  G+ E
Sbjct: 86  AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDR---NVVSWTSLMVGYSDKGEPE 142

Query: 222 GGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQC------------------ 262
             + ++  M G+ V    + +SLV  +S+C  L   S G+Q                   
Sbjct: 143 EVIDIYKGMRGEGVGCNENSMSLV--ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENS 200

Query: 263 --------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                   G ++ A  +F++M  +D +SWN++   Y++ G  E++F +F  MR+ + ++N
Sbjct: 201 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVN 260

Query: 315 VVT---------------WSAVIAG--------------------YAQRGHGHEALDVFR 339
             T               W   I G                    YA  G   EA  VF+
Sbjct: 261 STTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFK 320

Query: 340 QMQ--------------------------FC-----GLEPNVVTLVSLLSGCASVGALLL 368
           QM                            C     G   N VT  S L+ C +      
Sbjct: 321 QMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEK 380

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G+  H   +     V G   + + + NAL+ MY K   +  +R +   +    RDV  W 
Sbjct: 381 GRILHGLVV-----VSGLFYNQI-IGNALVSMYGKIGEMSESRRVL--LQMPRRDVVAWN 432

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA-ALRFGRQIHAYV 487
            +IG Y+++   + ALA F  M  +   V  N  T+   L AC      L  G+ +HAY+
Sbjct: 433 ALIGGYAEDEDPDKALAAFQTMRVEG--VSSNYITVVSVLSACLLPGDLLERGKPLHAYI 490

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +   +E     V N LI MY++ GD+ +++ +F+ L  RN+++W +++     HG G++ 
Sbjct: 491 VSAGFES-DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEV 549

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
                +MR  G++ D  +F   L A +   ++++G +    ++ + G    +  +    D
Sbjct: 550 LKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEG-QQLHGLAVKLGFEHDSFIFNAAAD 608

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           +  +   + E V+++        P  W  L++    H   E      + +LE+   K G 
Sbjct: 609 MYSKCGEIGEVVKMLPPSVNRSLP-SWNILISALGRHGYFEEVCATFHEMLEM-GIKPGH 666

Query: 668 YTLLSNIYA 676
            T +S + A
Sbjct: 667 VTFVSLLTA 675



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 208/489 (42%), Gaps = 79/489 (16%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY +   +  AR LFD M  P + + VSWNT+++   + G    G+  F +M  D+ ++ 
Sbjct: 1   MYTKFGRVKPARHLFDIM--P-VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMC-DLGIKP 56

Query: 239 DGVSLVNALSACASLGTWSR-GKQC--------------------------GMMEEAKKV 271
               + + ++AC   G+  R G Q                           G++  ++KV
Sbjct: 57  SSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKV 116

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           FE M  ++VVSW +++ GYS  G  E+   ++K MR E V  N  + S VI+        
Sbjct: 117 FEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISS------- 169

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
                       CGL  +            S+G  ++G+            V       L
Sbjct: 170 ------------CGLLKD-----------ESLGRQIIGQ-----------VVKSGLESKL 195

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V N+LI M     +VD A  +FD ++   RD  +W  +  +Y+QNG   ++  +F  M 
Sbjct: 196 AVENSLISMLGSMGNVDYANYIFDQMS--ERDTISWNSIAAAYAQNGHIEESFRIFSLMR 253

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +    V  N+ T+S  L     +   ++GR IH  V++  ++ ++  V N L+ MY+ +G
Sbjct: 254 RFHDEV--NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC-VCNTLLRMYAGAG 310

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
               A +VF  +  ++++SW SLM  +   G    A      M   G + + VTF   L 
Sbjct: 311 RSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALA 370

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           AC      ++G +    +    G+         +V + G+   + E+  ++  MP     
Sbjct: 371 ACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV- 428

Query: 632 IIWVALLNG 640
           + W AL+ G
Sbjct: 429 VAWNALIGG 437



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WNA++         +   +L  +M   G   D+++F   L A  +L     G  +H
Sbjct: 529 NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH 588

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQS 217
            +    GF+ + F+ NA   MY++C  +    +    M  P +   + SWN +++A  + 
Sbjct: 589 GLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVK----MLPPSVNRSLPSWNILISALGRH 644

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
           G  E     F  M  ++ ++   V+ V+ L+AC+  G   +G
Sbjct: 645 GYFEEVCATFHEML-EMGIKPGHVTFVSLLTACSHGGLVDKG 685


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 271/785 (34%), Positives = 405/785 (51%), Gaps = 105/785 (13%)

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--- 202
            +L  +    +VHA I +SGF     + N L+  Y +   + YAR LFD++ +P I    
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 203 ---------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMT---- 231
                                      D VS+N ++ A++ S D    L LF +M     
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 232 -----------GDVKVQGDGV-------------------SLVNALSAC-ASLGTWSRGK 260
                      G + +  D                     S++NAL +C  S  +     
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186

Query: 261 QCGMMEEAKKVFERMKV--KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
            C +M  A+K+F+      +D  +W  ++ GY R      A  L + M         V W
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIA----VAW 242

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A+I+GY  RG   EA D+ R+M   G++ +  T  S++S  ++ G   +G++ H Y ++
Sbjct: 243 NAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLR 302

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN----------------- 421
            V+   G     L V NALI +Y +C  +  AR +FD +  K+                 
Sbjct: 303 TVVQPSGHFV--LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRI 360

Query: 422 ------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
                       R + TWTVMI   +QNG   + L LF QM  +   ++P  +  + A+ 
Sbjct: 361 EEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEG--LEPCDYAYAGAIA 418

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           +C+ L +L  G+Q+H+ +++  ++  +  V N LI MYSR G ++ A  VF  +   + V
Sbjct: 419 SCSVLGSLDNGQQLHSQIIQLGHDSSLS-VGNALITMYSRCGLVEAADTVFLTMPYVDSV 477

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW +++     HG G +A   +++M KE + PD +TFL +L ACSH+G+V +G  YFD+M
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTM 537

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
              +GI+   +HY+ ++DLL RA    EA  + E MP EP   IW ALL GC IH N+EL
Sbjct: 538 RVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMEL 597

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
           G  AA+RLLEL  ++DG+Y  LSN+YA  G+W +VAR+R LM+  GVKK PGCSW++ + 
Sbjct: 598 GIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVEN 657

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F V D  HP+   +Y  L  LV  ++ +GYVP T F LHD++ E+K   L  HSEK
Sbjct: 658 MVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEK 717

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+ YGI+    G  IR+ KNLRICGDCH+A  +IS +++ EII+RD  RFHHF+ G C+
Sbjct: 718 LAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECS 777

Query: 830 CKGYW 834
           C  YW
Sbjct: 778 CSNYW 782



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/583 (26%), Positives = 255/583 (43%), Gaps = 102/583 (17%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLL---QRISP 95
           I  L+   CKS    Y  +          +P   ++AA    +A S A ++    Q  + 
Sbjct: 34  INRLIDHYCKSFNIPYARYL------FDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNA 87

Query: 96  SPFSV---FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           +P S+     +NA+I           A +LF+QM R G+ PD +TF  VL A   +    
Sbjct: 88  TPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEE 147

Query: 153 CG-SSVHAVICSSGFDSNVFVCNALMAMYARCDT---------LSYARQLFDEMFQPGIC 202
                +H  +   G  S   V NALM+ Y  C +         ++ AR+LFDE   PG  
Sbjct: 148 THCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEA-PPGRR 206

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV-------------------------- 236
           D  +W TI+A Y ++ D      L   MT  + V                          
Sbjct: 207 DEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMH 266

Query: 237 ----QGDGVSLVNALSACASLGTWSRGKQ------------------------------C 262
               Q D  +  + +SA ++ G ++ G+Q                              C
Sbjct: 267 SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRC 326

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G + EA++VF++M VKD+VSWNA+++G       E+A ++F++M       +++TW+ +I
Sbjct: 327 GKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR----SLLTWTVMI 382

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G AQ G G E L +F QM+  GLEP        ++ C+ +G+L  G++ H   I+    
Sbjct: 383 SGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQL--- 439

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
               H   L V NALI MY++C  V+ A  +F  +     D  +W  MI + +Q+G    
Sbjct: 440 ---GHDSSLSVGNALITMYSRCGLVEAADTVF--LTMPYVDSVSWNAMIAALAQHGHGVQ 494

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ L+ +M ++D L  P+  T    L AC+    ++ GR  H +        + P   + 
Sbjct: 495 AIQLYEKMLKEDIL--PDRITFLTILSACSHAGLVKEGR--HYFDTMRVCYGITPEEDHY 550

Query: 503 --LIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
             LID+  R+G    A+ V +++  +     W +L+ G  +HG
Sbjct: 551 SRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHG 593



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 188/424 (44%), Gaps = 66/424 (15%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +IA YV ++    A  LL+ ++        WNA+I   V     + AF L  +M   G  
Sbjct: 214 IIAGYVRNDDLVAARELLEGMTDH--IAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQ 271

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN----VFVCNALMAMYARCDTLSY 188
            DEYT+  V+ A         G  VHA +  +    +    + V NAL+ +Y RC  L  
Sbjct: 272 LDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVE 331

Query: 189 ARQLFDEMFQPGICDIVSWNTI-------------------------------VAAYAQS 217
           AR++FD+M    + D+VSWN I                               ++  AQ+
Sbjct: 332 ARRVFDKM---PVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQN 388

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  E GL LF +M  +  ++    +   A+++C+ LG+   G+Q        ++ +    
Sbjct: 389 GFGEEGLKLFNQMKLE-GLEPCDYAYAGAIASCSVLGSLDNGQQL-----HSQIIQLGHD 442

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +   NA++T YSR G  E A  +F  M      ++ V+W+A+IA  AQ GHG +A+ +
Sbjct: 443 SSLSVGNALITMYSRCGLVEAADTVFLTMPY----VDSVSWNAMIAALAQHGHGVQAIQL 498

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV---LSVDGSHPDDLMVI 394
           + +M    + P+ +T +++LS C+  G +  G+  H +   RV   ++ +  H   L+ +
Sbjct: 499 YEKMLKEDILPDRITFLTILSACSHAGLVKEGR--HYFDTMRVCYGITPEEDHYSRLIDL 556

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG----GANDALALFPQM 450
                M+++ K+V    + F+  AP       W  ++     +G    G   A  L   M
Sbjct: 557 LCRAGMFSEAKNV-TESMPFEPGAP------IWEALLAGCWIHGNMELGIQAADRLLELM 609

Query: 451 FQQD 454
            QQD
Sbjct: 610 PQQD 613


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/683 (37%), Positives = 396/683 (57%), Gaps = 55/683 (8%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           D LSYA  +F+ + +P   +++ WNT+   +A + D+   L L+  M   + +  +  S 
Sbjct: 13  DGLSYAISIFETIQEP---NLLIWNTMFRGHALNSDSVTALKLYVCMIS-LGLLPNSYSF 68

Query: 244 VNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERMKV 277
              L +CA       G+Q                           G +E+A KVF+R   
Sbjct: 69  PFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSH 128

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           + VVS+ A++TGY+  G   +A  LF ++   +VK +VV+W+A+I+GY +  +  EAL++
Sbjct: 129 RHVVSYTALITGYASRGYINNARKLFDEI---SVK-DVVSWNAMISGYVETCNFKEALEL 184

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           ++ M    ++P+  T+V+++S CA  G++ LG++ H +        D     ++ ++N L
Sbjct: 185 YKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI------EDHGFGSNIKIVNVL 238

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID+Y+KC  V+ A  +F  +A K  DV +W  +IG ++      +AL LF +M +  +  
Sbjct: 239 IDLYSKCGEVETACGLFQGLAKK--DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE-- 294

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYV------LRNQYEMLIPFVANCLIDMYSRSG 511
            PN  T+   L ACA L A+  GR IH Y+      + N   +L       LIDMY++ G
Sbjct: 295 SPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL-----TSLIDMYAKCG 349

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           DI+ A+ VFD++  R++ SW +++ G+ MHG  + A   F +MRK G+ PD +TF+ LL 
Sbjct: 350 DIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLS 409

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSHSGM+D G   F SMS+++ I+ + EHY C++DLLG      EA E+I  MPMEP  
Sbjct: 410 ACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDG 469

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
           +IW +LL  C++H NVELGE  A  L+++E E  GSY LLSNIYA AGRW  VA+IR+L+
Sbjct: 470 VIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLL 529

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
              G+KK PGCS ++       F +GD+ HP++++IY +L  +   ++  G+VP TS  L
Sbjct: 530 NDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVL 589

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
            ++++E K   L  HSEKLA+A+G+++T PGT + I KNLR+C +CH A   IS I   E
Sbjct: 590 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 649

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           II RD  R H  K+G  +C  YW
Sbjct: 650 IIARDRTRLHLLKDGVWSCHDYW 672



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 148/535 (27%), Positives = 257/535 (48%), Gaps = 66/535 (12%)

Query: 84  SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           S A+S+ + I     ++  WN + R          A +L++ M+  G  P+ Y+FPF+LK
Sbjct: 16  SYAISIFETIQEP--NLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL----------------S 187
           +C +  +   G  +H  +   G+D +++V  +L++MYA+   L                S
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 188 Y---------------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           Y               AR+LFDE+    + D+VSWN +++ Y ++ + +  L L+  M  
Sbjct: 134 YTALITGYASRGYINNARKLFDEI---SVKDVVSWNAMISGYVETCNFKEALELYKDMM- 189

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
              V+ D  ++V  +SACA  G+   G+Q     E       +K+      N ++  YS+
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIV-----NVLIDLYSK 244

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G  E A  LF+ +     K +V++W+ +I G+       EAL +F++M   G  PN VT
Sbjct: 245 CGEVETACGLFQGL----AKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           ++S+L  CA +GA+ +G+  H Y  KR+  V  +      ++ +LIDMYAKC  ++ A+ 
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASS----LLTSLIDMYAKCGDIEAAKQ 356

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD++    R +++W  MI  ++ +G AN A  LF +M +    + P+  T    L AC+
Sbjct: 357 VFDSML--TRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG--IDPDDITFVGLLSACS 412

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVV 529
               L  GR  H +   +Q   + P + +  C+ID+    G    A+ +   +  + + V
Sbjct: 413 HSGMLDLGR--HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGV 470

Query: 530 SWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            W SL+    MH    LG+   +A + ++ E   P     L  +YA   +G  DQ
Sbjct: 471 IWCSLLKACKMHNNVELGES--YAQNLIKIEPENPGSYVLLSNIYAT--AGRWDQ 521



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 159/392 (40%), Gaps = 75/392 (19%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + LI  Y S    + A  L   IS     V  WNA+I   V       A  L+  MM
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVK--DVVSWNAMISGYVETCNFKEALELYKDMM 189

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           +    PDE T   V+ AC +  S   G  +H+ I   GF SN+ + N L+ +Y++C  + 
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVE 249

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            A  LF  + +    D++SWNT++  +      +  L+LF  M    +   D V++++ L
Sbjct: 250 TACGLFQGLAKK---DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND-VTMLSVL 305

Query: 248 SACASLGTWSRGK----------------------------QCGMMEEAKKVFERMKVKD 279
            ACA LG    G+                            +CG +E AK+VF+ M  + 
Sbjct: 306 PACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRS 365

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           + SWNAM+ G++  G    AF LF KMR+  +                            
Sbjct: 366 LSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI---------------------------- 397

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                  +P+ +T V LLS C+  G L LG+      I R +S D      L     +ID
Sbjct: 398 -------DPDDITFVGLLSACSHSGMLDLGRH-----IFRSMSQDYKITPKLEHYGCMID 445

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           +   C     A+ M   + P   D   W  ++
Sbjct: 446 LLGHCGLFKEAKEMIRTM-PMEPDGVIWCSLL 476


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/558 (43%), Positives = 350/558 (62%), Gaps = 15/558 (2%)

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           + D++  N ++   ++      A  LF KM + +     V+WS +I G+ + G       
Sbjct: 32  IHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDP----VSWSVMIGGFVKNGDYERCFQ 87

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            FR++   G +P+  +L  ++  C     L++G+  H   +K     +G H D+  V + 
Sbjct: 88  TFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLK-----NGLHLDNF-VCST 141

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMYAKC  +D A+ +FD + PK +D+ T TVMI  Y++ G  N++  LF QM ++D  
Sbjct: 142 LVDMYAKCGMIDNAKQLFDRM-PK-KDLVTRTVMIAGYAECGKPNESWVLFDQM-RRDGF 198

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V P+   +   + ACA+L A+   R +H YV   +Y + +  +   +IDMY++ G ID++
Sbjct: 199 V-PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVE-LGTAMIDMYAKCGSIDSS 256

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R +FD ++Q+NV+SW++++  YG HG G +A   F  M   G+ P+ +TF+ LLYACSH+
Sbjct: 257 REIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHA 316

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+VD GL+ F  MS  +G+    +HY C+VDLLGRA RLD+A+ LIE M +E    IW A
Sbjct: 317 GLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCA 376

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
            L  CRIH  V+L E AA  LL L+++  G Y LLSNIYANAGRWKDVA+IR+LM    +
Sbjct: 377 FLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRL 436

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG +W++       F  GD +H +S +IYE+L  L Q++++ GYVP T+  LHDVD+
Sbjct: 437 KKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDE 496

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K  +L  HSEKLA+A+G++ T  GTPIRITKNLR+CGDCHS    +S I   +II+RD
Sbjct: 497 EVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRD 556

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHFKEG C+C  YW
Sbjct: 557 ANRFHHFKEGICSCGDYW 574



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 193/393 (49%), Gaps = 25/393 (6%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISP-SPFSV 100
           L +C+++ Q+  +H Q+    + H  +  + L+     H     A  L  ++    P S 
Sbjct: 10  LFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVS- 68

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
             W+ +I   V+    +  F+ F +++R G  PD ++ PFV+KAC +      G  +H+ 
Sbjct: 69  --WSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +  +G   + FVC+ L+ MYA+C  +  A+QLFD M +    D+V+   ++A YA+ G  
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK---DLVTRTVMIAGYAECGKP 183

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
               +LF +M  D  V  D V++V  ++ACA LG  ++ +          V  R    DV
Sbjct: 184 NESWVLFDQMRRDGFVP-DKVAMVTIVNACAKLGAMNKARLV-----HDYVCARRYSLDV 237

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               AM+  Y++ GS + +  +F +M Q+    NV++WSA+I  Y   G G EAL++F  
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQK----NVISWSAMIGAYGYHGQGREALELFHM 293

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   G+ PN +T +SLL  C+  G +  G +     +  ++SV      D+     ++D+
Sbjct: 294 MLNSGIIPNRITFISLLYACSHAGLVDDGLQ-----LFSLMSVSYGVRPDVKHYTCMVDL 348

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             +   +D A  + + +  + +D   W   +G+
Sbjct: 349 LGRAGRLDQALRLIENMEVE-KDEGIWCAFLGA 380


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/601 (40%), Positives = 358/601 (59%), Gaps = 40/601 (6%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +++A+ VF+++    VV+ +A+++ ++R G  ++   LF + R   V+LN+V+W+ +I+G
Sbjct: 125 LKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISG 184

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           + + G   +A+ +F+ M   GL+P+  ++ S+L     +   L+G + HCY IK+     
Sbjct: 185 FNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQ----- 239

Query: 385 GSHPDDLMVINALIDMYAKCKS-------------------------------VDVARVM 413
           G  PD   V++ALIDMY KC                                 VD A  +
Sbjct: 240 GLGPDKF-VVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEV 298

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F      + +V +WT MI S SQNG   +AL LF +M  Q + VKPN+ T+ C L AC  
Sbjct: 299 FKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREM--QIEGVKPNSVTIPCLLPACGN 356

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +AAL  G+  H + LRN     + +V + LIDMY++ G +  +R+ FD +  RN+VSW S
Sbjct: 357 IAALLHGKAAHCFSLRNGIFNDV-YVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNS 415

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           LM GY MHG   +A   F+ M++ G  PD V+F  +L AC+  G+ ++G  YFDSMS+  
Sbjct: 416 LMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNH 475

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           G+ AR EHY+C+V LLGR+ RL+EA  +I+ MP EP   +W ALL+ CR+H  V+LGE+A
Sbjct: 476 GVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIA 535

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A R+ ELE    G+Y LLSNIYA+   W +V  +R +M+  G+KK PG SW++ K     
Sbjct: 536 AKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHM 595

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
              GD +HPQ  +I E LA L   +K  GYVP T F L DV++++K  +L  HSEKLA+ 
Sbjct: 596 LLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVV 655

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
            G+L T PG P+++ KNLRIC DCH+ I FIS     EI +RD+NRFH FK G C+C  Y
Sbjct: 656 LGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDY 715

Query: 834 W 834
           W
Sbjct: 716 W 716



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 239/515 (46%), Gaps = 73/515 (14%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
           +  R+F  M+ +G  PD    P V+K C  L + + G  +H     SG   +  V ++L+
Sbjct: 57  HVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLL 116

Query: 178 AMYARCDTLSYARQLFDEMFQPGIC--------------------------------DIV 205
            MY + D L  AR +FD++ QPG+                                 ++V
Sbjct: 117 HMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLV 176

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---- 261
           SWN +++ + +SG     +++F  M  +  ++ DG S+ + L A   L     G Q    
Sbjct: 177 SWNGMISGFNRSGSYLDAVLMFQNMHLE-GLKPDGTSVSSVLPAVGDLDMPLMGIQIHCY 235

Query: 262 ----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                 C    E   VF  M   DV + NA+VTG SR G  ++A
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +FK+ +   + LNVV+W+++IA  +Q G   EAL++FR+MQ  G++PN VT+  LL  
Sbjct: 296 LEVFKQFK--GMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPA 353

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C ++ ALL GK  HC++++  +       +D+ V +ALIDMYAKC  +  +R+ FD +  
Sbjct: 354 CGNIAALLHGKAAHCFSLRNGIF------NDVYVGSALIDMYAKCGRMLASRLCFDMMP- 406

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
            NR++ +W  ++  Y+ +G   +A+ +F  M +  +  KP+  + +C L AC +      
Sbjct: 407 -NRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQ--KPDHVSFTCVLSACTQGGLTEE 463

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
           G      + RN          +C++ +  RSG ++ A  +   +  + +   W +L++  
Sbjct: 464 GWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSC 523

Query: 539 GMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYA 572
            +H   D    A  ++ + E   P     L  +YA
Sbjct: 524 RVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYA 558



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 125/292 (42%), Gaps = 40/292 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    R     +A  +F  M   G  PD  +   VL A G+L     G  +H  + 
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM--FQPGIC------------------ 202
             G   + FV +AL+ MY +C   S    +F+EM     G C                  
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 203 ----------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
                     ++VSW +++A+ +Q+G     L LF  M  +  V+ + V++   L AC +
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIE-GVKPNSVTIPCLLPACGN 356

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           +     GK          +F      DV   +A++  Y++ G    +   F  M      
Sbjct: 357 IAALLHGKAAHCFSLRNGIF-----NDVYVGSALIDMYAKCGRMLASRLCFDMMPNR--- 408

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            N+V+W++++AGYA  G   EA+++F  MQ CG +P+ V+   +LS C   G
Sbjct: 409 -NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGG 459



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 167/398 (41%), Gaps = 81/398 (20%)

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           ++    I  +++  H    + VF  M   G+ P+   L +++  CA++ AL  GK+ HC+
Sbjct: 40  ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI---------------APK 420
            +   L +D       +V+++L+ MY +   +  AR +FD +               A K
Sbjct: 100 ALVSGLGLDS------VVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARK 153

Query: 421 NR------------------DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            R                  ++ +W  MI  ++++G   DA+ +F  M  +   +KP+  
Sbjct: 154 GRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG--LKPDGT 211

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMY------------- 507
           ++S  L A   L     G QIH YV++   + L P  FV + LIDMY             
Sbjct: 212 SVSSVLPAVGDLDMPLMGIQIHCYVIK---QGLGPDKFVVSALIDMYGKCACASEMSGVF 268

Query: 508 ------------------SRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKA 547
                             SR+G +D A  VF   K    NVVSWTS++     +G   +A
Sbjct: 269 NEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEA 328

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F +M+ EG+ P+ VT   LL AC +   +  G K     S   GI       + ++D
Sbjct: 329 LELFREMQIEGVKPNSVTIPCLLPACGNIAALLHG-KAAHCFSLRNGIFNDVYVGSALID 387

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           +  +  R+  +    + MP     + W +L+ G  +H 
Sbjct: 388 MYAKCGRMLASRLCFDMMP-NRNLVSWNSLMAGYAMHG 424



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 21/243 (8%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           AL + ++      +V  W ++I    +      A  LF +M   G  P+  T P +L AC
Sbjct: 295 ALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPAC 354

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
           G + +   G + H     +G  ++V+V +AL+ MYA+C  +  +R  FD M      ++V
Sbjct: 355 GNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR---NLV 411

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           SWN+++A YA  G     + +F  M      + D VS    LSAC          Q G+ 
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQ-RCGQKPDHVSFTCVLSACT---------QGGLT 461

Query: 266 EEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           EE    F+ M     V      ++ MVT   R G  E+A+A+ K+M  E    +   W A
Sbjct: 462 EEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEP---DSCVWGA 518

Query: 321 VIA 323
           +++
Sbjct: 519 LLS 521


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 358/558 (64%), Gaps = 16/558 (2%)

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           ++D+V  N ++  Y++  + +DA++LF  +   + K    TWS ++ G+A+ G       
Sbjct: 32  LQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSK----TWSVMVGGFAKAGDHAGCYA 87

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            FR++  CG+ P+  TL  ++  C     L +G+  H   +K  L        D  V  +
Sbjct: 88  TFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGL------LSDHFVCAS 141

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMYAKC  V+ A+ +F+ +  K  D+ TWTVMIG+Y+ +  A ++L LF +M ++   
Sbjct: 142 LVDMYAKCIVVEDAQRLFERMLSK--DLVTWTVMIGAYA-DCNAYESLVLFDRMREEG-- 196

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V P+   +   + ACA+L A+   R  + Y++RN + + +  +   +IDMY++ G +++A
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDV-ILGTAMIDMYAKCGSVESA 255

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R VFD +K++NV+SW++++  YG HG G  A   F  M    + P+ VTF+ LLYACSH+
Sbjct: 256 REVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHA 315

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G++++GL++F+SM +E  +    +HY C+VDLLGRA RLDEA+ LIE M +E    +W A
Sbjct: 316 GLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSA 375

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CRIH+ +EL E AAN LLEL+ +  G Y LLSNIYA AG+W+ VA+ R +M    +
Sbjct: 376 LLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKL 435

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG +W++    T  F VGDR+HPQS++IYE+L  L+++++  GYVP T F L DV++
Sbjct: 436 KKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEE 495

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E K ++L+ HSEKLA+A+G++    G PIRI+KNLR+CGDCH+    +S I+   II+RD
Sbjct: 496 EVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRD 555

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHF +G+C+C  YW
Sbjct: 556 ANRFHHFNDGTCSCGDYW 573



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 196/444 (44%), Gaps = 87/444 (19%)

Query: 43  LLRQCKSLTQVYLIHQQII----VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           LL +C+++  +  +H  ++    +Q+L  V  + L+  Y  H A   A SL   ++    
Sbjct: 9   LLLRCRNVFHIRQVHAHVVANGTLQDL--VIANKLLYTYAQHKAIDDAYSLFDGLTMRDS 66

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
               W+ ++    +       +  F +++R G  PD YT PFV++ C +    + G  +H
Sbjct: 67  KT--WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIH 124

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V+   G  S+ FVC +L+ MYA+C  +  A++LF+ M      D+V+W  ++ AYA   
Sbjct: 125 DVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSK---DLVTWTVMIGAYADC- 180

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
           +A   L+LF RM  +  V  D V++V  ++ACA LG   R +                  
Sbjct: 181 NAYESLVLFDRMREE-GVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILG 239

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG +E A++VF+RMK K+V+SW+AM+  Y   G  +DA             
Sbjct: 240 TAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDA------------- 286

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                 +D+F  M  C + PN VT VSLL  C+  G +    E 
Sbjct: 287 ----------------------IDLFHMMLSCAILPNRVTFVSLLYACSHAGLI----EE 320

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                  +       P D+     ++D+  +   +D A  + +A+  + +D   W+ ++G
Sbjct: 321 GLRFFNSMWEEHAVRP-DVKHYTCMVDLLGRAGRLDEALRLIEAMTVE-KDERLWSALLG 378

Query: 433 S---YSQ----NGGANDALALFPQ 449
           +   +S+       AN  L L PQ
Sbjct: 379 ACRIHSKMELAEKAANSLLELQPQ 402


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 304/814 (37%), Positives = 434/814 (53%), Gaps = 35/814 (4%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP----PSHLIAAYVSHNAPSPALSLL 90
           P IK ++  LR  +S      IH   + + L H P     + L+ AY      + AL + 
Sbjct: 62  PAIK-SAAALRDARS---ARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVF 117

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
             IS S      +N+LI      R  D+A      M+  G     +T   VL+A   LP+
Sbjct: 118 GSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPA 177

Query: 151 S----RCGSSVHAVICSSGF--DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           +    R G   HA    +G       F  NAL++MYAR   ++ A++LF     PG  D+
Sbjct: 178 AAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGA-TPGRGDV 236

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           V+WNT+V+   QSG  +  +     M   + V+ DGV+  +AL AC+ L     G++   
Sbjct: 237 VTWNTMVSVLVQSGMFDEAVQTLYDMVA-LGVRPDGVTFASALPACSRLELLDVGRE--- 292

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           M       + +     V+ +A+V  Y+       A  +F  +     +L +  W+A+I G
Sbjct: 293 MHAYVIKDDELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGM--WNAMICG 349

Query: 325 YAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           YAQ G   EAL +F +M+   G  P   T+ S+L  CA   A    +  H Y +KR ++ 
Sbjct: 350 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMA- 408

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 +  V NAL+DMYA+    DVAR +F  +     DV +W  +I      G   DA
Sbjct: 409 -----GNRFVQNALMDMYARLGKTDVARRIFAMVDLP--DVVSWNTLITGCVVQGHVADA 461

Query: 444 LALFPQMFQ-QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
             L  +M Q ++  V PNA TL   L  CA LAA   G++IH Y +R+  +  +  V + 
Sbjct: 462 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA-VGSA 520

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-P 561
           L+DMY++ G +  +R VFD L +RN ++W  L+  YGMHGLG +A   FD+M   G A P
Sbjct: 521 LVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARP 580

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + VTF+  L ACSHSGMVD+GL+ F +M ++ G+    +  AC+VD+LGRA RLDEA  +
Sbjct: 581 NEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAM 640

Query: 622 IEGMPM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           +  M   E     W  +L  CR+H NV LGE+A  RLLELE E+   Y LL NIY+ AG+
Sbjct: 641 VTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQ 700

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W   A +RS M+  GV K PGCSW++       F  G+  HP S++++  +  L   + A
Sbjct: 701 WTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVA 760

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GY P TS  LHD+DD +K  +L  HSEKLA+A+G+L  APG  IR+ KNLR+C DCH A
Sbjct: 761 RGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEA 820

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             F+S ++  EI+LRD  RFHHF+ G C+C  YW
Sbjct: 821 AKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 304/814 (37%), Positives = 434/814 (53%), Gaps = 35/814 (4%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP----PSHLIAAYVSHNAPSPALSLL 90
           P IK ++  LR  +S      IH   + + L H P     + L+ AY      + AL + 
Sbjct: 64  PAIK-SAAALRDARS---ARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVF 119

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
             IS S      +N+LI      R  D+A      M+  G     +T   VL+A   LP+
Sbjct: 120 GSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPA 179

Query: 151 S----RCGSSVHAVICSSGF--DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           +    R G   HA    +G       F  NAL++MYAR   ++ A++LF     PG  D+
Sbjct: 180 AAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGA-TPGRGDV 238

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           V+WNT+V+   QSG  +  +     M   + V+ DGV+  +AL AC+ L     G++   
Sbjct: 239 VTWNTMVSVLVQSGMFDEAVQTLYDMVA-LGVRPDGVTFASALPACSRLELLDVGRE--- 294

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           M       + +     V+ +A+V  Y+       A  +F  +     +L +  W+A+I G
Sbjct: 295 MHAYVIKDDELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGM--WNAMICG 351

Query: 325 YAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           YAQ G   EAL +F +M+   G  P   T+ S+L  CA   A    +  H Y +KR ++ 
Sbjct: 352 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMA- 410

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 +  V NAL+DMYA+    DVAR +F  +     DV +W  +I      G   DA
Sbjct: 411 -----GNRFVQNALMDMYARLGKTDVARRIFAMVDLP--DVVSWNTLITGCVVQGHVADA 463

Query: 444 LALFPQMFQ-QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
             L  +M Q ++  V PNA TL   L  CA LAA   G++IH Y +R+  +  +  V + 
Sbjct: 464 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA-VGSA 522

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-P 561
           L+DMY++ G +  +R VFD L +RN ++W  L+  YGMHGLG +A   FD+M   G A P
Sbjct: 523 LVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARP 582

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + VTF+  L ACSHSGMVD+GL+ F +M ++ G+    +  AC+VD+LGRA RLDEA  +
Sbjct: 583 NEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAM 642

Query: 622 IEGMPM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           +  M   E     W  +L  CR+H NV LGE+A  RLLELE E+   Y LL NIY+ AG+
Sbjct: 643 VTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQ 702

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W   A +RS M+  GV K PGCSW++       F  G+  HP S++++  +  L   + A
Sbjct: 703 WTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVA 762

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GY P TS  LHD+DD +K  +L  HSEKLA+A+G+L  APG  IR+ KNLR+C DCH A
Sbjct: 763 RGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEA 822

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             F+S ++  EI+LRD  RFHHF+ G C+C  YW
Sbjct: 823 AKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 304/814 (37%), Positives = 434/814 (53%), Gaps = 35/814 (4%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP----PSHLIAAYVSHNAPSPALSLL 90
           P IK ++  LR  +S      IH   + + L H P     + L+ AY      + AL + 
Sbjct: 62  PAIK-SAAALRDARS---ARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVF 117

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
             IS S      +N+LI      R  D+A      M+  G     +T   VL+A   LP+
Sbjct: 118 GSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPA 177

Query: 151 S----RCGSSVHAVICSSGF--DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           +    R G   HA    +G       F  NAL++MYAR   ++ A++LF     PG  D+
Sbjct: 178 AAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGA-TPGRGDV 236

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           V+WNT+V+   QSG  +  +     M   + V+ DGV+  +AL AC+ L     G++   
Sbjct: 237 VTWNTMVSVLVQSGMFDEAVQTLYDMVA-LGVRPDGVTFASALPACSRLELLDVGRE--- 292

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           M       + +     V+ +A+V  Y+       A  +F  +     +L +  W+A+I G
Sbjct: 293 MHAYVIKDDELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGM--WNAMICG 349

Query: 325 YAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           YAQ G   EAL +F +M+   G  P   T+ S+L  CA   A    +  H Y +KR ++ 
Sbjct: 350 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMA- 408

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 +  V NAL+DMYA+    DVAR +F  +     DV +W  +I      G   DA
Sbjct: 409 -----GNRFVQNALMDMYARLGKTDVARRIFAMVDLP--DVVSWNTLITGCVVQGHVADA 461

Query: 444 LALFPQMFQ-QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
             L  +M Q ++  V PNA TL   L  CA LAA   G++IH Y +R+  +  +  V + 
Sbjct: 462 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA-VGSA 520

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-P 561
           L+DMY++ G +  +R VFD L +RN ++W  L+  YGMHGLG +A   FD+M   G A P
Sbjct: 521 LVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARP 580

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + VTF+  L ACSHSGMVD+GL+ F +M ++ G+    +  AC+VD+LGRA RLDEA  +
Sbjct: 581 NEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAM 640

Query: 622 IEGMPM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           +  M   E     W  +L  CR+H NV LGE+A  RLLELE E+   Y LL NIY+ AG+
Sbjct: 641 VTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQ 700

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W   A +RS M+  GV K PGCSW++       F  G+  HP S++++  +  L   + A
Sbjct: 701 WTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVA 760

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GY P TS  LHD+DD +K  +L  HSEKLA+A+G+L  APG  IR+ KNLR+C DCH A
Sbjct: 761 RGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEA 820

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             F+S ++  EI+LRD  RFHHF+ G C+C  YW
Sbjct: 821 AKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 283/770 (36%), Positives = 428/770 (55%), Gaps = 43/770 (5%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           S S    F WN+LI +    + P  A   F +M       + +TFP +LKAC  L     
Sbjct: 12  SISHKDTFHWNSLIAKNA-TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
              VHA +   G  ++ F   AL+  Y +C    YA Q+FDEM + G  D+VSW  +++A
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPE-GSVDVVSWTALISA 129

Query: 214 YAQSGDAEGGLMLFARM------TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           Y+ +G  +     F RM       G      D VSL   +SACA +G  S   + G    
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVH 188

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              V     V   +  N+MV  YS       A+ +F  +  E  + +VV+W+++I+G+  
Sbjct: 189 GLVVKYGFGVSTHLG-NSMVHMYSACKDVGGAWRVFNGIPIE--QRDVVSWNSLISGFTL 245

Query: 328 RGHGHEALDVFRQMQFCG---LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            G    AL  F  M   G   +EPN VT+++LL  CA +G +      H Y   R  S+ 
Sbjct: 246 NGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLL 305

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            +   D++V+ AL+DM+A+C ++ +AR +FD +  KN  V  W+ MI  Y Q     +AL
Sbjct: 306 VA--KDVVVLTALLDMHARCGNLALAREIFDGVEGKN--VVCWSAMIAGYEQGSCPEEAL 361

Query: 445 ALFPQMFQQDKLV----KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            LF QM  +  +V    KPNA TL   + AC+RL A R    IH Y +    +     +A
Sbjct: 362 RLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQ-DARIA 420

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + LIDM ++ GDI+  R VF  + +  R VVSW+S++   G+HG G +A   F +MR  G
Sbjct: 421 SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGG 480

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
             P+ +T++ +L ACSH+G+V+QG   F+SM K++G+S   +HYAC+VDLLGRA  LDEA
Sbjct: 481 YEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEA 540

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
             +I  MP++    +W +LL  C +H N +LGE+   ++L L+S   G + LL+N+Y +A
Sbjct: 541 HNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDA 600

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           GRW DV R+R  ++ +G++K PG S+++      +F   DR+HP+S+ IY+ L GL +R+
Sbjct: 601 GRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERV 660

Query: 739 -KAMGYVPQTSFALHDVDDEEKGDLLFE---HSEKLALAYGIL----------TTAPGTP 784
            KA  YV +T     +V+D +   L+     HSE+LA+A+G++          +    TP
Sbjct: 661 RKAAKYVTETGL---NVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATP 717

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRITKNLR+C DCH+    +S +I+ E+I+RD++RFHHF++G C+C  YW
Sbjct: 718 IRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 291/798 (36%), Positives = 440/798 (55%), Gaps = 29/798 (3%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +SLL +   +L  V  IH QII    +      + LI  Y        A ++  + S   
Sbjct: 50  SSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPE 109

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V   NA+I   +R +      RLF  M       + YT  F LKAC +L     G  +
Sbjct: 110 TAV--CNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEI 167

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
                  GF  +++V ++++    +   L+ A+++FD M +    D+V WN+I+  Y Q 
Sbjct: 168 IRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEK---DVVCWNSIIGGYVQK 224

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G     + +F  M G   ++   V++ N L AC   G     K+ GM   +  +   M  
Sbjct: 225 GLFWESIQMFLEMIGG-GLRPSPVTMANLLKACGQSGL----KKVGMCAHSYVLALGMG- 278

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            DV    ++V  YS +G    A  +F  M       ++++W+A+I+GY Q G   E+  +
Sbjct: 279 NDVFVLTSLVDMYSNLGDTGSAALVFDSM----CSRSLISWNAMISGYVQNGMIPESYAL 334

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           FR++   G   +  TLVSL+ GC+    L  G+  H   I++ L    SH   L++  A+
Sbjct: 335 FRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELE---SH---LVLSTAI 388

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +DMY+KC ++  A ++F  +  KN  V TWT M+   SQNG A DAL LF QM  Q++ V
Sbjct: 389 VDMYSKCGAIKQATIVFGRMGKKN--VITWTAMLVGLSQNGYAEDALKLFCQM--QEEKV 444

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
             N+ TL   +  CA L +L  GR +HA+ +R+ Y      + + LIDMY++ G I +A 
Sbjct: 445 AANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYA-FDAVITSALIDMYAKCGKIHSAE 503

Query: 518 VVFDN-LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
            +F+N    ++V+   S++ GYGMHG G  A   + +M +E L P+  TF+ LL ACSHS
Sbjct: 504 KLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHS 563

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++G   F SM ++  +  + +HYAC+VDL  RA RL+EA EL++ MP +P+  +  A
Sbjct: 564 GLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEA 623

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+GCR H N  +G   A+RL+ L+    G Y +LSNIYA A +W+ V  IR LM+  G+
Sbjct: 624 LLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGM 683

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG S ++      TFF  D +HP    IY++L  L   ++A GY+P TS  L DV++
Sbjct: 684 KKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNE 743

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
             K  LL+ HSE+LA+A+G+L+T  G+ I+ITKNLR+C DCH+   +IS I+  EII+RD
Sbjct: 744 PMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRD 803

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHF  G C+C  +W
Sbjct: 804 ANRFHHFVNGKCSCNDFW 821


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 407/678 (60%), Gaps = 23/678 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +   G   + F+   L+   +    +++ARQ+FD++ +P    I  WN I+  Y++
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRP---QIFPWNAIIRGYSR 96

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +   +  L++++ M    +V  D  +  + L AC+ L     G+         +VF    
Sbjct: 97  NNHFQDALLMYSNMQL-ARVSPDSFTFPHLLKACSGLSHLQMGRFV-----HAQVFRLGF 150

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV   N ++  Y++      A  +F+ +     +  +V+W+A+++ YAQ G   EAL+
Sbjct: 151 DADVFVQNGLIALYAKCRRLGSARTVFEGLPLP--ERTIVSWTAIVSAYAQNGEPMEALE 208

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F  M+   ++P+ V LVS+L+    +  L  G+  H   +K  L ++   PD L+ +N 
Sbjct: 209 IFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE---PDLLISLNT 265

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
              MYAKC  V  A+++FD +  K+ ++  W  MI  Y++NG A +A+ +F +M  +D  
Sbjct: 266 ---MYAKCGQVATAKILFDKM--KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-- 318

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+P+  +++ A+ ACA++ +L   R ++ YV R+ Y   + F+++ LIDM+++ G ++ A
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDV-FISSALIDMFAKCGSVEGA 377

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R+VFD    R+VV W++++ GYG+HG   +A   +  M + G+ P+ VTFL LL AC+HS
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +G  +F+ M+ +  I+ + +HYAC++DLLGRA  LD+A E+I+ MP++P   +W A
Sbjct: 438 GMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ C+ H +VELGE AA +L  ++    G Y  LSN+YA A  W  VA +R  MK  G+
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
            K  GCSWV+ +     F VGD++HP+ ++I   +  +  R+K  G+V     +LHD++D
Sbjct: 557 NKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EE  + L  HSE++A+AYG+++T  GTP+RITKNLR C +CH+A   IS +++ EI++RD
Sbjct: 617 EEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRD 676

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHFK+G C+C  YW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 232/487 (47%), Gaps = 76/487 (15%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P  +F WNA+IR   R     +A  ++  M      PD +TFP +LKAC  L   + G
Sbjct: 80  PRP-QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VHA +   GFD++VFV N L+A+YA+C  L  AR +F+ +  P    IVSW  IV+AY
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT-IVSWTAIVSAY 197

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
           AQ+G+    L +F+ M   + V+ D V+LV+ L+A   L    +G+              
Sbjct: 198 AQNGEPMEALEIFSHMR-KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       +CG +  AK +F++MK  +++ WNAM++GY++ G   +A  +F +M  
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           ++V+ + +                                   ++ S +S CA VG+L  
Sbjct: 317 KDVRPDTI-----------------------------------SITSAISACAQVGSLEQ 341

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
            +  + Y  +        + DD+ + +ALIDM+AKC SV+ AR++FD     +RDV  W+
Sbjct: 342 ARSMYEYVGR------SDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL--DRDVVVWS 393

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI  Y  +G A +A++L+  M  +   V PN  T    LMAC     +R G      + 
Sbjct: 394 AMIVGYGLHGRAREAISLYRAM--ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA 451

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
            ++        A C+ID+  R+G +D A  V   +  Q  V  W +L++    H   +  
Sbjct: 452 DHKINPQQQHYA-CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 548 HWAFDQM 554
            +A  Q+
Sbjct: 511 EYAAQQL 517



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 171/364 (46%), Gaps = 42/364 (11%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQII---------VQNLTHVP 69
           +++N++L  V+  P       LL+ C  L+ + +   +H Q+          VQN     
Sbjct: 106 MYSNMQLARVS--PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN----- 158

Query: 70  PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
              LIA Y        A ++ + +     ++  W A++    +   P  A  +F  M + 
Sbjct: 159 --GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM 216

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
              PD      VL A   L   + G S+HA +   G +    +  +L  MYA+C  ++ A
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           + LFD+M  P   +++ WN +++ YA++G A   + +F  M  +  V+ D +S+ +A+SA
Sbjct: 277 KILFDKMKSP---NLILWNAMISGYAKNGYAREAIDMFHEMI-NKDVRPDTISITSAISA 332

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKK 305
           CA         Q G +E+A+ ++E +       DV   +A++  +++ GS E A  +F +
Sbjct: 333 CA---------QVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
               +V    V WSA+I GY   G   EA+ ++R M+  G+ PN VT + LL  C   G 
Sbjct: 384 TLDRDV----VVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 366 LLLG 369
           +  G
Sbjct: 440 VREG 443


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/640 (40%), Positives = 383/640 (59%), Gaps = 28/640 (4%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+ SWN+++A  A+SGD+   L+ F+ M   + +     S   A+ AC+SL     GKQ 
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMR-KLSLYPTRSSFPCAIKACSSLFDIFSGKQT 98

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                 ++ F      D+   +A++  YS  G  EDA    +K+  E  K N+V+W+++I
Sbjct: 99  -----HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA----RKVFDEIPKRNIVSWTSMI 149

Query: 323 AGYAQRGHGHEALDVFRQMQFC------GLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            GY   G+  +A+ +F+ +          +  + + LVS++S C+ V A  L +  H + 
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNRDVATWTVMIGSY 434
           IKR           + V N L+D YAK     V VAR +FD I  K+R   ++  ++  Y
Sbjct: 210 IKR------GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR--VSYNSIMSVY 261

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q+G +N+A  +F ++ + +K+V  NA TLS  L+A +   ALR G+ IH  V+R   E 
Sbjct: 262 AQSGMSNEAFEVFRRLVK-NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +  V   +IDMY + G ++TAR  FD +K +NV SWT+++ GYGMHG   KA   F  M
Sbjct: 321 DV-IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
              G+ P+ +TF+ +L ACSH+G+  +G ++F++M   FG+    EHY C+VDLLGRA  
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L +A +LI+ M M+P  IIW +LL  CRIH NVEL E++  RL EL+S   G Y LLS+I
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHI 499

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA+AGRWKDV R+R +MK+ G+ K PG S ++       F +GD  HPQ +KIYE LA L
Sbjct: 500 YADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAEL 559

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
            +++   GYV  TS   HDVD+EEK   L  HSEKLA+A+GI+ T PG+ + + KNLR+C
Sbjct: 560 NRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCH+ I  IS I++ E ++RD+ RFHHFK+G C+C  YW
Sbjct: 620 SDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 223/451 (49%), Gaps = 31/451 (6%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN++I    R      A   F  M +   +P   +FP  +KAC  L     G   H 
Sbjct: 41  VFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQ 100

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G+ S++FV +AL+ MY+ C  L  AR++FDE+ +    +IVSW +++  Y  +G+
Sbjct: 101 QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKR---NIVSWTSMIRGYDLNGN 157

Query: 220 AEGGLMLFARMTGDVKVQGDG-----VSLVNALSACASLGTWSRGKQCGMMEEAKK-VFE 273
           A   + LF  +  D     D      + LV+ +SAC      SR    G+ E     V +
Sbjct: 158 ALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC------SRVPAKGLTESIHSFVIK 211

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           R   + V   N ++  Y++ G  E   A+ +K+  + V  + V+++++++ YAQ G  +E
Sbjct: 212 RGFDRGVSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 334 ALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           A +VFR++ +   +  N +TL ++L   +  GAL +GK  H   I+  L       DD++
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL------EDDVI 323

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  ++IDMY KC  V+ AR  FD +  KN++V +WT MI  Y  +G A  AL LFP M  
Sbjct: 324 VGTSIIDMYCKCGRVETARKAFDRM--KNKNVRSWTAMIAGYGMHGHAAKALELFPAMI- 380

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFG-RQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            D  V+PN  T    L AC+       G R  +A   R   E  +     C++D+  R+G
Sbjct: 381 -DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG-CMVDLLGRAG 438

Query: 512 DIDTARVVFDNLKQR-NVVSWTSLMTGYGMH 541
            +  A  +   +K + + + W+SL+    +H
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 173/342 (50%), Gaps = 18/342 (5%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K +V +W++VIA  A+ G   EAL  F  M+   L P   +    +  C+S+  +  GK+
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           TH         V G +  D+ V +ALI MY+ C  ++ AR +FD I PK R++ +WT MI
Sbjct: 98  THQQAF-----VFG-YQSDIFVSSALIVMYSTCGKLEDARKVFDEI-PK-RNIVSWTSMI 149

Query: 432 GSYSQNGGANDALALFPQMF----QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             Y  NG A DA++LF  +       D  +  ++  L   + AC+R+ A      IH++V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGD--IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           ++  ++  +  V N L+D Y++ G+  +  AR +FD +  ++ VS+ S+M+ Y   G+ +
Sbjct: 210 IKRGFDRGVS-VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 546 KAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           +A   F ++ K  +   + +T   +L A SHSG +  G    D + +  G+         
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTS 327

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           I+D+  +  R++ A +  + M  +     W A++ G  +H +
Sbjct: 328 IIDMYCKCGRVETARKAFDRMKNKNVR-SWTAMIAGYGMHGH 368


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/668 (38%), Positives = 380/668 (56%), Gaps = 34/668 (5%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +V++   ++  YAR     +A QLF EM    + D+VSWN+++       D      LF 
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEM---PVKDVVSWNSMIKGCFDCADLTMARKLFD 81

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M     V     +++N               Q G +E A+ +F +M  +D+ +WN+M+ 
Sbjct: 82  EMPERSVVSW--TTMINGF------------LQFGKIEVAEGLFYKMPFRDIAAWNSMIY 127

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE- 347
           GY   G  ED   LF++M   NV    ++W+++I G  Q G   EAL +FRQM  CG+E 
Sbjct: 128 GYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEV 183

Query: 348 -PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            P   T   +++ CA+  AL  G + H +  K   S D        +  ALI  YA CK 
Sbjct: 184 KPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDA------YISAALITFYANCKQ 237

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ +  +F      N  V  WT ++  Y  N    DAL +F +M ++  L  PN  + + 
Sbjct: 238 MEDSLRVFHGKLHMN--VVIWTALVTGYGLNCKHEDALKVFGEMMREGVL--PNQSSFTS 293

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
           AL +C  L AL +GR+IH   ++   E  + FV N LI MY R G+++   V+F  + ++
Sbjct: 294 ALNSCCGLEALDWGREIHTAAVKLGLETDV-FVGNSLIVMYYRCGNLNDGVVIFKRISKK 352

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           N+VSW S++ G   HG G  A   F+QM +  + PD +TF  LL ACSHSGM  +G   F
Sbjct: 353 NIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLF 412

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
              S+      + +HYAC+VD+LGR+ +L+EA ELI  MP++   ++W+ LL+ C +H+ 
Sbjct: 413 KYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSK 472

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           +E+ E AA  +++LE     +Y LLSN+YA+A RW DV+RIR  MK  G+ K+PG SW+ 
Sbjct: 473 LEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWIT 532

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
            K     F  GDR+HP S +IY+ L  L  ++K +GYVP   FALHDV+DE+K  +L  H
Sbjct: 533 IKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYH 592

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SE+LA+ +G+++T  G+ I + KNLR+CGDCHSAI  I+ I+  +II+RDS RFHHF +G
Sbjct: 593 SERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDG 652

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 653 RCSCGDYW 660



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 183/381 (48%), Gaps = 23/381 (6%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           ++EA+ VF+++   DV  +  M+TGY+R   F+ A  LF +M  +    +VV+W+++I G
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVK----DVVSWNSMIKG 66

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
                    A  +F +M     E +VV+  ++++G    G + + +        R     
Sbjct: 67  CFDCADLTMARKLFDEMP----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR----- 117

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                D+   N++I  Y     V+    +F  +  +N  V +WT MIG   Q+G + +AL
Sbjct: 118 -----DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRN--VISWTSMIGGLDQHGRSEEAL 170

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF QM      VKP + T  C + ACA  +AL  G QIHA+V +  Y     +++  LI
Sbjct: 171 GLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYS-FDAYISAALI 229

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
             Y+    ++ +  VF      NVV WT+L+TGYG++   + A   F +M +EG+ P+  
Sbjct: 230 TFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQS 289

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           +F   L +C     +D G +   + + + G+         ++ +  R   L++ V + + 
Sbjct: 290 SFTSALNSCCGLEALDWG-REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 348

Query: 625 MPMEPTPIIWVALLNGCRIHA 645
           +  +   + W +++ GC  H 
Sbjct: 349 IS-KKNIVSWNSVIVGCAQHG 368



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 17/300 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y  +      L L Q +     +V  W ++I    +    + A  LF QMM  G  
Sbjct: 125 MIYGYCCNGRVEDGLRLFQEMPCR--NVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 133 --PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P   T+  V+ AC    +   G  +HA +   G+  + ++  AL+  YA C  +  + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++F         ++V W  +V  Y  +   E  L +F  M  +  V  +  S  +AL++C
Sbjct: 243 RVFHGKLHM---NVVIWTALVTGYGLNCKHEDALKVFGEMMRE-GVLPNQSSFTSALNSC 298

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
             L     G++  +   A K+       DV   N+++  Y R G+  D   +FK++    
Sbjct: 299 CGLEALDWGRE--IHTAAVKLGLE---TDVFVGNSLIVMYYRCGNLNDGVVIFKRIS--- 350

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
            K N+V+W++VI G AQ G G  AL  F QM    +EP+ +T   LLS C+  G    G+
Sbjct: 351 -KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR 409



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 27/339 (7%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP 85
           +++   ++T C  IT+       +L Q   IH  +    L +   +++ AA ++  A   
Sbjct: 181 VEVKPTSSTYCCVITACA--NASALYQGVQIHAHVF--KLGYSFDAYISAALITFYANCK 236

Query: 86  ALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
            +    R+       +V  W AL+         ++A ++F +MMR G  P++ +F   L 
Sbjct: 237 QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 296

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           +C  L +   G  +H      G +++VFV N+L+ MY RC  L+    +F  + +    +
Sbjct: 297 SCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKK---N 353

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           IVSWN+++   AQ G     L  F +M   + V+ D ++    LSAC+  G   +G+ C 
Sbjct: 354 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSM-VEPDEITFTGLLSACSHSGMSQKGR-CL 411

Query: 264 MMEEAKKVFERMKVKDVV--SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
                 K F   K  +V    +  MV    R G  E+A  L + M    VK N + W  +
Sbjct: 412 F-----KYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNM---PVKANSMVWLVL 463

Query: 322 IAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLS 358
           ++        H  L+V  +   C   LEP+  +   LLS
Sbjct: 464 LSACTM----HSKLEVAERAAKCIIDLEPHCSSAYVLLS 498


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 282/767 (36%), Positives = 424/767 (55%), Gaps = 37/767 (4%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           S S    F WN+LI +    + P  A   F +M       + +TFP +LKAC  L     
Sbjct: 12  SISHKDTFHWNSLIAKNA-TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
              VHA +   G  ++ F   AL+  Y +C    YA Q+FDEM + G  D+VSW  +++A
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPE-GSVDVVSWTALISA 129

Query: 214 YAQSGDAEGGLMLFARM------TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           Y+ +G  +     F RM       G      D VSL   +SACA +G  S   + G    
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVH 188

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              V     V   +  N+MV  YS       A+ +F  +  E  + +VV+W+++I+G+  
Sbjct: 189 GLVVKYGFGVSTHLG-NSMVHMYSACKDVGGAWRVFNGIPIE--QRDVVSWNSLISGFXL 245

Query: 328 RGHGHEALDVFRQMQFCG---LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            G    AL  F  M   G   +EPN VT+++LL  CA +G +      H Y   R  S+ 
Sbjct: 246 NGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLL 305

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            +   D++V+ AL+DM+A+C ++ +AR +FD +  KN  V  W+ MI  Y Q     +AL
Sbjct: 306 VA--KDVVVLTALLDMHARCGNLALAREIFDGVEGKN--VVCWSAMIAGYEQGSCPEEAL 361

Query: 445 ALFPQMFQQDKLV----KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            LF QM  +  +V    KPNA TL   + AC+RL A R    IH Y +    +     +A
Sbjct: 362 RLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQ-DARIA 420

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + LIDM ++ GDI+  R VF  + +  R VVSW+S++   G+HG G +A   F +MR  G
Sbjct: 421 SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGG 480

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
             P+ +T++ +L ACSH+G+V+QG   F+SM K++G+S   +HYAC+VDLLGRA  LDEA
Sbjct: 481 YEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEA 540

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
             +I  MP++    +W +LL  C +H N +LGE+   ++L L+S   G + LL+N+Y +A
Sbjct: 541 HNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDA 600

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           GRW DV R+R  ++ +G++K PG S+++      +F   DR+HP+S+ IY+ L GL +R+
Sbjct: 601 GRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERV 660

Query: 739 -KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL----------TTAPGTPIRI 787
            KA  YV +T   + D D          HSE+LA+A+G++          +    TPIRI
Sbjct: 661 RKAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRI 720

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           TKNLR+C DCH+    +S +I+ E+I+RD++RFHHF++G C+C  YW
Sbjct: 721 TKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 279/851 (32%), Positives = 441/851 (51%), Gaps = 96/851 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LL+ C ++ +   IH  +I  NL H P   S ++A  +S N    A  +L   S  P S+
Sbjct: 41  LLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILS-YSHEPESI 99

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            W N L+   ++   P      +  M+ +G   D  TF F++ AC +    + GS VH  
Sbjct: 100 IW-NTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGR 158

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I   GF  N  + N LM +Y++C  L    QLF++M      D++SWNT+++ Y   G  
Sbjct: 159 ILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHR---DVISWNTMISCYVLKGMY 215

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT----------------WSRGK---- 260
              L LF  M     V  D +++V+ +S CA L                  W RG     
Sbjct: 216 REALDLFDEMLVS-GVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNC 274

Query: 261 ------QCGMMEEAKKVFERMKVK--DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                 +CG M+EA  +  R      DVV W  +V+GY +    + A  LF KM + ++ 
Sbjct: 275 LVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSL- 333

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              V+W+ +++GY Q G+  E+L++F+QM+F  + P+ V LV++LS C  +    LG+  
Sbjct: 334 ---VSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV 390

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN----------- 421
           H + +   + VDG       + NAL+D+YAKC  +D A   F+ +  K+           
Sbjct: 391 HAFIVTYGMLVDG------FLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGF 444

Query: 422 ------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
                             +D+ +W  M+ +Y ++   N++  +F +M  Q   VKP+  T
Sbjct: 445 CRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM--QSSNVKPDKTT 502

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L   L +CA++ AL  G  ++ Y+ +N+   +   +   LIDMY + G ++ A  +F  +
Sbjct: 503 LISLLSSCAKVGALNHGIWVNVYIEKNEIG-IDAMLGTALIDMYGKCGCVEMAYEIFTQI 561

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            ++NV  WT++M  Y M G   +A   + +M + G+ PD VTF+ LL ACSH G+VD+G 
Sbjct: 562 IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGY 621

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           KYF+ +   + I     HY C+VDLLGR   L+E V+ IE MP+EP   IW +L+  CR 
Sbjct: 622 KYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRS 681

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H NVEL E A  +L+E++   +G++ LLSNIYA+AGRW DV+++R+ +  TGV K+PG +
Sbjct: 682 HHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFT 741

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
            ++ + G    FV       S  +   +  ++Q I+    V Q           E  D  
Sbjct: 742 MIE-QNGVVHEFVA------SNLVSADILCMLQDIERRLLVKQ-----------ELSDTT 783

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
            +HSE+LA+A+G++     +PIR+  ++R+C DCHS +  IS   + EI++RD+ RFH F
Sbjct: 784 SQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRF 843

Query: 824 KEGSCTCKGYW 834
            +G C+CK YW
Sbjct: 844 TDGHCSCKDYW 854


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/581 (42%), Positives = 361/581 (62%), Gaps = 20/581 (3%)

Query: 258 RGKQCGMMEEAK----KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
           R  Q G ++E K     V       D+V  N+++  Y+R GS E A  LF +M   ++  
Sbjct: 83  RCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDM-- 140

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V+W+++I GYAQ     +AL +F +M   G EPN  TL SL+  C  + +   G++ H
Sbjct: 141 --VSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIH 198

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
               K      G H  ++ V ++L+DMYA+C  +  A ++FD +  KN    +W  +I  
Sbjct: 199 ACCWKY-----GCH-SNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNE--VSWNALIAG 250

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y++ G   +ALALF +M  Q +  +P  FT S  L +C+ +  L  G+ +HA+++++  +
Sbjct: 251 YARKGEGEEALALFVRM--QREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSS-Q 307

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
            L+ +V N L+ MY++SG I  A  VFD L + +VVS  S++ GY  HGLG +A   FD+
Sbjct: 308 KLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDE 367

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M + G+ P+ +TFL +L ACSH+ ++D+G  YF  M K + I  +  HYA IVDLLGRA 
Sbjct: 368 MIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAG 426

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            LD+A   IE MP+EPT  IW ALL   ++H N E+G  AA R+ EL+    G++TLL+N
Sbjct: 427 LLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLAN 486

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IYA+AGRW+DVA++R +MK +GVKK P CSWV+ +     F   D  HPQ +KI+++   
Sbjct: 487 IYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEK 546

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           L Q+IK +GYVP TS  L  VD +EK   L  HSEKLAL++ +L T PG+ IRI KN+R+
Sbjct: 547 LNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRV 606

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CGDCHSAI ++S+++  EII+RD+NRFHHF +G C+C  YW
Sbjct: 607 CGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 230/477 (48%), Gaps = 41/477 (8%)

Query: 5   NGVFPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVY---LIHQQII 61
           N + P L SKT L   H+   I   S+   P   + + LL++C  L ++    L+H  ++
Sbjct: 47  NLLRPSLNSKTGL---HVLDLIDCGSLE--PDRTLYNTLLKRCTQLGKLKEGKLVHFHVL 101

Query: 62  VQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNA 119
             N  H  V  + L+  Y    +   A  L   + P    V W + +   A   R  D A
Sbjct: 102 NSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEM-PHRDMVSWTSMITGYAQNDRASD-A 159

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
             LF +M+  G  P+E+T   ++K CG + S  CG  +HA     G  SNVFV ++L+ M
Sbjct: 160 LLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDM 219

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           YARC  L  A  +FD++   G  + VSWN ++A YA+ G+ E  L LF RM  +   +  
Sbjct: 220 YARCGYLGEAMLVFDKL---GCKNEVSWNALIAGYARKGEGEEALALFVRMQRE-GYRPT 275

Query: 240 GVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
             +    LS+C+S+G   +GK     +M+ ++K+   +        N ++  Y++ GS  
Sbjct: 276 EFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVG-------NTLLHMYAKSGSIR 328

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           DA  +F K+    VK++VV+ ++++ GYAQ G G EA   F +M   G+EPN +T +S+L
Sbjct: 329 DAEKVFDKL----VKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVL 384

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDG--SHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           + C+   A LL +  H + + R  +++   SH         ++D+  +   +D A+   +
Sbjct: 385 TACSH--ARLLDEGKHYFGLMRKYNIEPKVSH------YATIVDLLGRAGLLDQAKSFIE 436

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            + P    VA W  ++G+   +           ++F+ D    P   TL   + A A
Sbjct: 437 EM-PIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDP-SYPGTHTLLANIYASA 491


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/736 (36%), Positives = 413/736 (56%), Gaps = 31/736 (4%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WNA+I       L   + R F  M       +  T   +L  C  + + + G  +H ++ 
Sbjct: 1016 WNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV 1075

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              G DSNV +CN L+ +Y+       A  +F  M +    D++SWN+++A Y Q G    
Sbjct: 1076 KLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTER---DLISWNSMMACYVQDGKCLD 1132

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD--- 279
            GL + A +    KV  + V+  +AL+AC++        +C  + E+K V   + V     
Sbjct: 1133 GLKILAELLQMGKVM-NHVTFASALAACSN-------PEC--LIESKIVHALIIVAGFHD 1182

Query: 280  -VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
             ++  NA+VT Y ++G   +A    KK+ Q   + + VTW+A+I G+A+    +EA+  +
Sbjct: 1183 FLIVGNALVTMYGKLGMMMEA----KKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY 1238

Query: 339  RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            + ++  G+  N +T+VS+L  C++   LL     H   I   + + G   DD  V N+LI
Sbjct: 1239 KLIREKGIPANYITMVSVLGACSAPDDLL----KHGMPIHAHIVLTGFESDDY-VKNSLI 1293

Query: 399  DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             MYAKC  ++ +  +FD +   N+   TW  M+ + + +G   +AL +F +M  ++  V 
Sbjct: 1294 TMYAKCGDLNSSNYIFDGLG--NKSPITWNAMVAANAHHGCGEEALKIFGEM--RNVGVN 1349

Query: 459  PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
             + F+ S  L A A LA L  G+Q+H  V++  +E  +  V N  +DMY + G++     
Sbjct: 1350 LDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDL-HVTNAAMDMYGKCGEMHDVLK 1408

Query: 519  VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            +      R+ +SW  L++ +  HG   KA   F +M K G  PD VTF+ LL AC+H G+
Sbjct: 1409 MLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGL 1468

Query: 579  VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            VD+GL Y+DSM++EFG+    EH  CI+DLLGR+ RL  A   I+ MP+ P  + W +LL
Sbjct: 1469 VDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLL 1528

Query: 639  NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              CRIH N+EL    A  LLEL+   D +Y L SN+ A +G+W+DV  +R  M    +KK
Sbjct: 1529 AACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKK 1588

Query: 699  RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            +P CSWV+ K+   +F +G++ HPQ+ +I   L  L++  K  GYVP TSFALHD+D+E+
Sbjct: 1589 QPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQ 1648

Query: 759  KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
            K   L+ HSE+LALA+G++ T   + +RI KNLR+CGDCHS   F+S I+  +I+LRD  
Sbjct: 1649 KEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPY 1708

Query: 819  RFHHFKEGSCTCKGYW 834
            RFHHF  G C+C  YW
Sbjct: 1709 RFHHFSGGKCSCGDYW 1724



 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 194/592 (32%), Positives = 319/592 (53%), Gaps = 27/592 (4%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+ C +  + + G  +H  + ++GF S++ +   L+  Y +   +  AR +FD M +  
Sbjct: 36  ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPER- 94

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
              +VSW  +V+ Y+Q+G  E   +LF+ M     V+ +  +  +AL AC SL     G 
Sbjct: 95  --SVVSWTAMVSGYSQNGRFEKAFVLFSDMR-HCGVKANQFTYGSALRACTSLRCLDMGI 151

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q     +  +  E + VK     +A+V  +S+ G  EDA  LF  M + +V    V+W+A
Sbjct: 152 QVQGCIQKGRFVENLFVK-----SALVDFHSKCGKMEDASYLFGTMMERDV----VSWNA 202

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I GYA +G   ++  +FR M   GL P+  TL S+L   A  G L++  + H      +
Sbjct: 203 MIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIH-----GI 257

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-G 439
           ++  G    D+ V   LI+ YAK  S+  A+ +   +  K  D+ + T +I  Y+  G  
Sbjct: 258 ITQLGYGSYDI-VTGLLINAYAKNGSLRSAKDLRKGMLKK--DLFSSTALITGYAHEGIY 314

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           + DAL LF +M Q +  +  +   L   L  CA LA+   G QIHA+ L+ Q    +  +
Sbjct: 315 SVDALDLFKEMNQMN--IGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVA-M 371

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N LIDMY++SG+I+ A+  FD ++++NV+SWTSL++GY  HG G  A   + +M  +G 
Sbjct: 372 GNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGF 431

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ VTFL LL+ACSH+G+  +G + F++M  ++ I  RAEHY+C+VDL  R   L+EA 
Sbjct: 432 KPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAY 491

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            L+  + ++    +W A+L    I+  + LG+ AA+ L  ++ E   +Y +L++IY+ AG
Sbjct: 492 NLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAG 551

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
            W D  +IR LM+    KK  G S+ Q  + +         H  S++ + IL
Sbjct: 552 LWDDAWKIRKLMEERSTKKNAGYSFFQATKKSIPLL--QVQHGVSRRDFNIL 601



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 158/592 (26%), Positives = 272/592 (45%), Gaps = 56/592 (9%)

Query: 12  KSKTPLTLNHLFTNIKLFSVTTTPC-----IKITSLLLRQCKSLTQVYLIHQQIIVQNL- 65
           K ++   L  L   +KL S   T       +KI  L + + K+  Q +LIH  +I     
Sbjct: 4   KIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDK-KAKKQGHLIHTHLITNGFG 62

Query: 66  --THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
              H+  + LI  YV       A ++   +     SV  W A++    +    + AF LF
Sbjct: 63  SDLHLN-TKLIIFYVKVGDVIAARNVFDGMPER--SVVSWTAMVSGYSQNGRFEKAFVLF 119

Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
             M   G   +++T+   L+AC  L     G  V   I    F  N+FV +AL+  +++C
Sbjct: 120 SDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKC 179

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             +  A  LF  M +    D+VSWN ++  YA  G A+    +F  M     V  D  +L
Sbjct: 180 GKMEDASYLFGTMMER---DVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP-DCYTL 235

Query: 244 VNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
            + L A A  G      Q  G++ +           D+V+   ++  Y++ GS   A   
Sbjct: 236 GSVLRASAEGGGLIIANQIHGIITQLG-----YGSYDIVT-GLLINAYAKNGSLRSA--- 286

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRG-HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
            K +R+  +K ++ + +A+I GYA  G +  +ALD+F++M    +  + V L S+L+ CA
Sbjct: 287 -KDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICA 345

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           ++ +  LG + H + +K   S       D+ + NALIDMYAK   ++ A+  FD +  KN
Sbjct: 346 NLASFALGTQIHAFALKYQPSY------DVAMGNALIDMYAKSGEIEDAKRAFDEMEEKN 399

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR--- 478
             V +WT +I  Y+++G  + A++L+ +M  + K  KPN  T    L AC+         
Sbjct: 400 --VISWTSLISGYAKHGYGHMAVSLYKKM--ESKGFKPNDVTFLSLLFACSHTGLTAEGC 455

Query: 479 --FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLM 535
             F   ++ Y ++ + E       +C++D+++R G ++ A  +   +  + N   W +++
Sbjct: 456 ECFNNMVNKYNIKPRAEHY-----SCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAIL 510

Query: 536 TG---YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
                YG   LG +A      M+ E    + V ++VL    S +G+ D   K
Sbjct: 511 GASSIYGYMSLGKEAASNLFNMQPE----NSVNYVVLASIYSAAGLWDDAWK 558



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 251/524 (47%), Gaps = 58/524 (11%)

Query: 140  FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
            F LK   E+ S   G ++HA       +  +F  N L+ MY++   + +AR +FDEM   
Sbjct: 749  FPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHR 808

Query: 200  GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
               +  SW+T+++ Y + G  E  + LF +M G + V+ +G  + + ++AC+  G     
Sbjct: 809  ---NEASWSTMLSGYVRVGLYEEAVGLFCQMWG-LGVEPNGFMVASLITACSRSGY---- 860

Query: 260  KQCGMMEEAKK----VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                M +E  +    V +   + DV    A+V  Y  IG   +A  LF++M   N    V
Sbjct: 861  ----MADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN----V 912

Query: 316  VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
            V+W++++ GY+  G+  E L+V+++M+  G+  N  T  ++ S C  +   +LG +   +
Sbjct: 913  VSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGH 972

Query: 376  TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
             I+          D + V N+LI M++   SV+ A  +FD +     D+ +W  MI +Y+
Sbjct: 973  IIQY------GFEDSVSVANSLISMFSSFSSVEEACYVFDHM--NECDIISWNAMISAYA 1024

Query: 436  QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
             +G   ++L  F  M       + N+ TLS  L  C+ +  L++GR IH  V++   +  
Sbjct: 1025 HHGLCRESLRCFHWMRHLHN--ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSN 1082

Query: 496  IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
            +  + N L+ +YS +G  + A +VF  + +R+++SW S+M  Y   G          ++ 
Sbjct: 1083 VC-ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELL 1141

Query: 556  KEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            + G   + VTF   L ACS           H+ ++  G         +F I   A     
Sbjct: 1142 QMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGF-------HDFLIVGNA----- 1189

Query: 605  IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
            +V + G+   + EA ++++ MP +P  + W AL+ G   HA  E
Sbjct: 1190 LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG---HAENE 1229



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 151/313 (48%), Gaps = 19/313 (6%)

Query: 337  VFRQMQFCGLEPNVVTLVSL-LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            VF Q Q        +  V+  L G + + + + GK  H + I       GS    +   N
Sbjct: 730  VFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIV------GSVNLGIFQTN 783

Query: 396  ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
             LI+MY+K  +++ AR +FD +  ++R+ A+W+ M+  Y + G   +A+ LF QM+    
Sbjct: 784  TLINMYSKFGNIEHARYVFDEM--RHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG- 840

Query: 456  LVKPNAFTLSCALMACARLAAL-RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             V+PN F ++  + AC+R   +   G Q+H +V++    +   +V   L+  Y   G + 
Sbjct: 841  -VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGI-LGDVYVGTALVHFYGSIGLVY 898

Query: 515  TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
             A+ +F+ +   NVVSWTSLM GY   G   +    + +MR+EG++ +  TF  +  +C 
Sbjct: 899  NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC- 957

Query: 575  HSGMVDQGLKYFDSMSK--EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
              G+++  +  +  +    ++G          ++ +    + ++EA  + + M  E   I
Sbjct: 958  --GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDII 1014

Query: 633  IWVALLNGCRIHA 645
             W A+++    H 
Sbjct: 1015 SWNAMISAYAHHG 1027


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/789 (35%), Positives = 434/789 (55%), Gaps = 48/789 (6%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRI----SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM 126
           S + AA+++  +    L   QR+    S     +  WN++I   +         RLF +M
Sbjct: 156 SGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKM 215

Query: 127 MRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           +  G   P E T+  V+ ACG     + G+ VH  I  +G ++   + N+L+  Y +C  
Sbjct: 216 VSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN-LWNSLVTFYGKCGN 274

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-DVKVQGDGVSLV 244
           L +A QLF+ + +    D+VSWN ++AA  Q G+ E  L LF RM   +  VQ + V+ +
Sbjct: 275 LQHASQLFERISRK---DVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFL 331

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           + LSA + L     G+     E    +F      D    N+++T YS+      A  +F+
Sbjct: 332 SLLSAVSGLSALRCGR-----EIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFE 386

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           ++    +  ++++W++++AGY Q        D+F++M   G+EP+  +L  + +  +   
Sbjct: 387 RL----LLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDS 442

Query: 365 ALLL----GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           + L+    GKE H Y ++R+     S    L V NA++ MYAK   +  A  +F  +  K
Sbjct: 443 SGLIYFRRGKEIHGYILRRITPGGVS----LSVSNAILKMYAKFNRIADAEKIFKGM--K 496

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           NRD  +W  M+  YS+N    D L +F  + +Q      +  +LS  L +C RL +L+ G
Sbjct: 497 NRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQG--FPLDHVSLSILLTSCGRLVSLQLG 554

Query: 481 RQIHAYVLR--------NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
           +Q HA V +        +Q  +L   + N LI MYS+ G I  A  VF  +++++V SWT
Sbjct: 555 KQFHAVVAKLFNGQDCPHQDSLLS--INNALISMYSKCGSIKDAAQVFLKMERKDVFSWT 612

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +++TG   HGL  +A   F++M+ +G+ P+ VTFL LL AC+H G+V +G  YFDSM  +
Sbjct: 613 AMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYND 672

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIE-GMPM-----EPTPIIWVALLNGCRIHAN 646
           +G+S   EHYAC++DL GR+ + D A  L+E G+ +     +    +W  LL  C     
Sbjct: 673 YGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQ 732

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           ++LG  AA ++LELE E + +Y LL+N+YA++G W+D  ++R  M+  G++K  GCSW+ 
Sbjct: 733 LDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWID 792

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
                  F  GD  HPQ ++IYE LA L    + MGYVP T   LHDVD+ EK  +L  H
Sbjct: 793 TGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCH 852

Query: 767 SEKLALAYGILTTAPGTP-IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           SEKLA+++G+L    G   IR+ KNLR+C DCHS + F S++   EI+LRDS RFH F++
Sbjct: 853 SEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRD 912

Query: 826 GSCTCKGYW 834
           GSC+C  YW
Sbjct: 913 GSCSCGDYW 921



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 157/563 (27%), Positives = 274/563 (48%), Gaps = 43/563 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK---ACGELPSSRCGSS 156
           V  W+ALI    R      AF LF +MM  G  P+ ++   +LK   + GE+   R    
Sbjct: 86  VISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCR---Q 142

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H     +GF  +  +  A + MY+RC  L  A+++FDE     + DI+ WN+I+AAY  
Sbjct: 143 LHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLAL-DILLWNSIIAAYIF 201

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G     L LF +M     V    ++  + ++AC S G     ++ G M   + +   ++
Sbjct: 202 HGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGE----EKYGAMVHGRIIKAGLE 257

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             ++  WN++VT Y + G+ + A  LF+++ ++    +VV+W+A+IA   QRG G  AL 
Sbjct: 258 ATNL--WNSLVTFYGKCGNLQHASQLFERISRK----DVVSWNAMIAANEQRGEGENALG 311

Query: 337 VFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           +FR+M      ++PN VT +SLLS  + + AL  G+E H +  +  L VD S      + 
Sbjct: 312 LFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTS------IT 365

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           N+LI  Y+KC+ V  AR +F+ +    RD+ +W  M+  Y QN        +F +M    
Sbjct: 366 NSLITFYSKCREVGKAREIFERLLL--RDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSG 423

Query: 455 KLVKPNAFTLSCALMACAR----LAALRFGRQIHAYVLRNQYEMLIPF-VANCLIDMYSR 509
             ++P++ +L+    A +R    L   R G++IH Y+LR      +   V+N ++ MY++
Sbjct: 424 --IEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAK 481

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
              I  A  +F  +K R+  SW ++M GY  +   +     F  + K+G   D V+  +L
Sbjct: 482 FNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSIL 541

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA------CIVDLLGRANRLDEAVELIE 623
           L +C     +  G ++   ++K F         +       ++ +  +   + +A ++  
Sbjct: 542 LTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVF- 600

Query: 624 GMPMEPTPII-WVALLNGCRIHA 645
            + ME   +  W A++ GC  H 
Sbjct: 601 -LKMERKDVFSWTAMITGCAHHG 622



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 234/499 (46%), Gaps = 42/499 (8%)

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           SS F      C+  +   +  + L  A+QLFD        D++SW+ ++AAY++ G+   
Sbjct: 48  SSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNR---DVISWSALIAAYSRCGNFAQ 104

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVV 281
              LF +M G+  +Q +G SL + L    S G      + G+  +      R     D  
Sbjct: 105 AFGLFQKMMGE-GLQPNGFSLASLLKVSCSTG------EIGLCRQLHGWSIRTGFGLDSG 157

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
              A +T YSR G  EDA  +F +     + L+++ W+++IA Y   G   E L +F +M
Sbjct: 158 IRAAWITMYSRCGVLEDAQRVFDETSL--LALDILLWNSIIAAYIFHGCWVEVLRLFCKM 215

Query: 342 QFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
              G + P  +T  S+++ C S G    G   H   IK  L           + N+L+  
Sbjct: 216 VSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN-------LWNSLVTF 268

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y KC ++  A  +F+ I+ K  DV +W  MI +  Q G   +AL LF +M + +  V+PN
Sbjct: 269 YGKCGNLQHASQLFERISRK--DVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPN 326

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T    L A + L+ALR GR+IHA++ R   E+    + N LI  YS+  ++  AR +F
Sbjct: 327 RVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTS-ITNSLITFYSKCREVGKAREIF 385

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           + L  R+++SW S++ GY  +    +    F +M   G+ PD  +  ++  A S      
Sbjct: 386 ERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRD---S 442

Query: 581 QGLKYFDSMSKEF-----------GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
            GL YF    KE            G+S    +   I+ +  + NR+ +A ++ +GM    
Sbjct: 443 SGLIYF-RRGKEIHGYILRRITPGGVSLSVSN--AILKMYAKFNRIADAEKIFKGMKNRD 499

Query: 630 TPIIWVALLNGCRIHANVE 648
           +   W A+++G   +A  E
Sbjct: 500 S-YSWNAMMDGYSRNAKFE 517



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A+ +FD     NRDV +W+ +I +YS+ G    A  LF +M  +   ++PN F+L+  L 
Sbjct: 74  AQQLFDNFP--NRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEG--LQPNGFSLASLLK 129

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD--NLKQRN 527
                  +   RQ+H + +R  +  L   +    I MYSR G ++ A+ VFD  +L   +
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFG-LDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALD 188

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           ++ W S++  Y  HG   +    F +M   G +AP  +T+  ++ AC  SG    G    
Sbjct: 189 ILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVH 248

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
             + K  G+ A    +  +V   G+   L  A +L E +  +   + W A+     I AN
Sbjct: 249 GRIIKA-GLEA-TNLWNSLVTFYGKCGNLQHASQLFERISRKDV-VSWNAM-----IAAN 300

Query: 647 VELGE 651
            + GE
Sbjct: 301 EQRGE 305


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/668 (38%), Positives = 380/668 (56%), Gaps = 34/668 (5%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +V++   ++  YAR     +A QLF EM    + D+VSWN+++       D      LF 
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEM---PVKDVVSWNSMIKGCFDCADLTMARKLFD 97

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M     V     +++N               Q G +E A+ +F +M  +D+ +WN+M+ 
Sbjct: 98  EMPERSVVSW--TTMINGF------------LQFGKIEVAEGLFYKMPFRDIAAWNSMIY 143

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE- 347
           GY   G  ED   LF++M   NV    ++W+++I G  Q G   EAL +FRQM  CG+E 
Sbjct: 144 GYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEV 199

Query: 348 -PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            P   T   +++ CA+  AL  G + H +  K   S D        +  ALI  YA CK 
Sbjct: 200 KPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDA------YISAALITFYANCKQ 253

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ +  +F      N  V  WT ++  Y  N    DAL +F +M ++  L  PN  + + 
Sbjct: 254 MEDSLRVFHGKLHMN--VVIWTALVTGYGLNCKHEDALKVFGEMMREGVL--PNQSSFTS 309

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
           AL +C  L AL +GR+IH   ++   E  + FV N LI MY R G+++   V+F  + ++
Sbjct: 310 ALNSCCGLEALDWGREIHTAAVKLGLETDV-FVGNSLIVMYYRCGNLNDGVVIFKRISKK 368

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           N+VSW S++ G   HG G  A   F+QM +  + PD +TF  LL ACSHSGM  +G   F
Sbjct: 369 NIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLF 428

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
              S+      + +HYAC+VD+LGR+ +L+EA ELI  MP++   ++W+ LL+ C +H+ 
Sbjct: 429 KYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSK 488

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           +E+ E AA  +++LE     +Y LLSN+YA+A RW DV+RIR  MK  G+ K+PG SW+ 
Sbjct: 489 LEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWIT 548

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
            K     F  GDR+HP S +IY+ L  L  ++K +GYVP   FALHDV+DE+K  +L  H
Sbjct: 549 IKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYH 608

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SE+LA+ +G+++T  G+ I + KNLR+CGDCHSAI  I+ I+  +II+RDS RFHHF +G
Sbjct: 609 SERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDG 668

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 669 RCSCGDYW 676



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 183/381 (48%), Gaps = 23/381 (6%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           ++EA+ VF+++   DV  +  M+TGY+R   F+ A  LF +M  +    +VV+W+++I G
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVK----DVVSWNSMIKG 82

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
                    A  +F +M     E +VV+  ++++G    G + + +        R     
Sbjct: 83  CFDCADLTMARKLFDEMP----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR----- 133

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                D+   N++I  Y     V+    +F  +  +N  V +WT MIG   Q+G + +AL
Sbjct: 134 -----DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRN--VISWTSMIGGLDQHGRSEEAL 186

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF QM      VKP + T  C + ACA  +AL  G QIHA+V +  Y     +++  LI
Sbjct: 187 GLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYS-FDAYISAALI 245

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
             Y+    ++ +  VF      NVV WT+L+TGYG++   + A   F +M +EG+ P+  
Sbjct: 246 TFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQS 305

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           +F   L +C     +D G +   + + + G+         ++ +  R   L++ V + + 
Sbjct: 306 SFTSALNSCCGLEALDWG-REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 364

Query: 625 MPMEPTPIIWVALLNGCRIHA 645
           +  +   + W +++ GC  H 
Sbjct: 365 IS-KKNIVSWNSVIVGCAQHG 384



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 17/300 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y  +      L L Q +     +V  W ++I    +    + A  LF QMM  G  
Sbjct: 141 MIYGYCCNGRVEDGLRLFQEMPCR--NVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 133 --PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P   T+  V+ AC    +   G  +HA +   G+  + ++  AL+  YA C  +  + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++F         ++V W  +V  Y  +   E  L +F  M  +  V  +  S  +AL++C
Sbjct: 259 RVFHGKLHM---NVVIWTALVTGYGLNCKHEDALKVFGEMMRE-GVLPNQSSFTSALNSC 314

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
             L     G++  +   A K+       DV   N+++  Y R G+  D   +FK++    
Sbjct: 315 CGLEALDWGRE--IHTAAVKLGLE---TDVFVGNSLIVMYYRCGNLNDGVVIFKRIS--- 366

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
            K N+V+W++VI G AQ G G  AL  F QM    +EP+ +T   LLS C+  G    G+
Sbjct: 367 -KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR 425



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 27/339 (7%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP 85
           +++   ++T C  IT+       +L Q   IH  +    L +   +++ AA ++  A   
Sbjct: 197 VEVKPTSSTYCCVITACA--NASALYQGVQIHAHVF--KLGYSFDAYISAALITFYANCK 252

Query: 86  ALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
            +    R+       +V  W AL+         ++A ++F +MMR G  P++ +F   L 
Sbjct: 253 QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 312

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           +C  L +   G  +H      G +++VFV N+L+ MY RC  L+    +F  + +    +
Sbjct: 313 SCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKK---N 369

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           IVSWN+++   AQ G     L  F +M   + V+ D ++    LSAC+  G   +G+ C 
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSM-VEPDEITFTGLLSACSHSGMSQKGR-CL 427

Query: 264 MMEEAKKVFERMKVKDVV--SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
                 K F   K  +V    +  MV    R G  E+A  L + M    VK N + W  +
Sbjct: 428 F-----KYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNM---PVKANSMVWLVL 479

Query: 322 IAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLS 358
           ++        H  L+V  +   C   LEP+  +   LLS
Sbjct: 480 LSACTM----HSKLEVAERAAKCIIDLEPHCSSAYVLLS 514


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 275/782 (35%), Positives = 435/782 (55%), Gaps = 34/782 (4%)

Query: 57  HQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLP 116
           +Q  +V+    V  +  +++YV       AL L + +       F WN +IR  V   L 
Sbjct: 51  NQSFLVER-NSVSLTRALSSYVERGYMKNALDLFENMRQC--DTFIWNVMIRGFVDNGLF 107

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
            +A   + +M   G   D +T+PFV+KACG L     G  VH  +  SG D ++++ N+L
Sbjct: 108 WDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSL 167

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MYA+   +  A  +F EM    + D+VSWN++++ Y   GD    L  F  M     +
Sbjct: 168 IIMYAKIGCIESAEMVFREM---PVRDLVSWNSMISGYVSVGDGWRSLSCFREMQAS-GI 223

Query: 237 QGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           + D  S++  L AC+  G    GK+  C MM        R+++ DV+   ++V  Y++ G
Sbjct: 224 KLDRFSVIGILGACSLEGFLRNGKEIHCQMMRS------RLEL-DVMVQTSLVDMYAKCG 276

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTL 353
             + A  LF ++  +++    V W+A+I GY+      E+    R+MQ  G L P+ +T+
Sbjct: 277 RMDYAERLFDQITDKSI----VAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITM 332

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           ++LL  CA + A+LLGK  H + I+     +G  P  L++  AL+DMY +C  +  A  +
Sbjct: 333 INLLPPCAQLEAILLGKSVHGFAIR-----NGFLPH-LVLETALVDMYGECGKLKPAECL 386

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F  +    R++ +W  MI SY++NG    A+ LF  +   +K +KP+A T++  L A A 
Sbjct: 387 FGQM--NERNLISWNAMIASYTKNGENRKAMTLFQDLC--NKTLKPDATTIASILPAYAE 442

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           LA+LR   QIH YV + + +    FV+N ++ MY + G++  AR +FD +  ++V+SW +
Sbjct: 443 LASLREAEQIHGYVTKLKLDS-NTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNT 501

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++  Y +HG G  +   F +MR++G  P+G TF+ LL +CS +G+V++G +YF+SM +++
Sbjct: 502 VIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDY 561

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            I+   EHY CI+DL+GR   LD A   IE MP+ PT  IW +LL   R   +VEL E+A
Sbjct: 562 NINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIA 621

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A  +L LE +  G Y LLSN+YA AGRW+DV RI+  MK  G++K  GCS V     T  
Sbjct: 622 AEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFR 681

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ-TSFALHDVDDEEKGDLLFEHSEKLAL 772
           F   DR+  +   +Y++L  + ++I    YV   T F   D+ ++++ +    HS +LA+
Sbjct: 682 FVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDL-EKKRANSAKSHSLRLAI 740

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
            +G+++T  G P+ + KN+RIC  CH     IS     EII+RDS  FHHF  G C+C  
Sbjct: 741 CFGLISTTIGNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGD 800

Query: 833 YW 834
           YW
Sbjct: 801 YW 802


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/683 (37%), Positives = 390/683 (57%), Gaps = 55/683 (8%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           + L YA  +F+ + +P   +++ WNT+   +A S D    L L+  M   + +  +  + 
Sbjct: 11  EGLPYAISVFETIQEP---NLLIWNTMFRGHALSPDPVSALKLYVCMIS-LGLLPNSYTF 66

Query: 244 VNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERMKV 277
              L +CA L     G Q                             +E+A KVF+R   
Sbjct: 67  PFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSH 126

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +DVVS+ A+VTGY+  G  E A  +F ++  ++V    V+W+A+I+GY + G+  EAL++
Sbjct: 127 RDVVSYTALVTGYASRGYIESARNMFDEIPVKDV----VSWNAMISGYVETGNYKEALEL 182

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M    + P+  T+V+++S  A  G++ LG++ H +        D     +L ++NAL
Sbjct: 183 FKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWI------ADHGFGSNLKIVNAL 236

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID Y+KC  ++ A  +F  ++ K  DV +W ++IG Y+      +AL LF +M +  +  
Sbjct: 237 IDFYSKCGEMETACGLFLGLSYK--DVISWNILIGGYTHLNLYKEALLLFQEMLRSGE-- 292

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC------LIDMYSRSG 511
            PN  T+   L ACA L A+  GR IH Y+ +      +  V N       LIDMYS+ G
Sbjct: 293 SPNDVTMLSILHACAHLGAIDIGRWIHVYIDKR-----LKGVTNASSLRTSLIDMYSKCG 347

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           DI+ A  VF+++  +++ +W +++ G+ MHG  + A   F +MRK  + PD +TF+ LL 
Sbjct: 348 DIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLS 407

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSH+GM+D G   F SM+  + I+ + EHY C++DLLG +    EA E+I  M MEP  
Sbjct: 408 ACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDG 467

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
           +IW +LL  C++H NVELGE  A  L ++E    GSY LLSNIYA AGRW +VARIR L+
Sbjct: 468 VIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLL 527

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
              G+KK PGCS ++       F +GD+ HP++++IY +L  +   ++  G+VP TS  L
Sbjct: 528 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVL 587

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
            ++++E K   L  HSEKLA+A+G+++T P T + I KNLR+C +CH A   IS I   E
Sbjct: 588 QEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKRE 647

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           II RD  RFHHF++G C+C  YW
Sbjct: 648 IIARDRTRFHHFRDGVCSCNDYW 670



 Score =  192 bits (488), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 144/552 (26%), Positives = 249/552 (45%), Gaps = 116/552 (21%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A+S+ + I     ++  WN + R       P +A +L++ M+  G  P+ YTFPF+LK+C
Sbjct: 16  AISVFETIQEP--NLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSC 73

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD----------- 194
            +L +S+ G  +H  +   G++ +++V  +L++MY + + L  A ++FD           
Sbjct: 74  AKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYT 133

Query: 195 ----------------EMF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                            MF +  + D+VSWN +++ Y ++G+ +  L LF  M     V+
Sbjct: 134 ALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM-KTNVR 192

Query: 238 GDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKV 271
            D  ++V  +SA A  G+   G+Q                          CG ME A  +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F  +  KDV+SWN ++ GY+ +  +++A  LF++M +                       
Sbjct: 253 FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRS---------------------- 290

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
                        G  PN VT++S+L  CA +GA+ +G+  H Y  KR+  V  +     
Sbjct: 291 -------------GESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASS--- 334

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            +  +LIDMY+KC  ++ A  +F+++  K+  +  W  MI  ++ +G AN A  +F +M 
Sbjct: 335 -LRTSLIDMYSKCGDIEAAHQVFNSMLHKS--LPAWNAMIFGFAMHGRANAAFDIFSRMR 391

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQI-----HAYVLRNQYEMLIPFVANCLIDM 506
           + +  +KP+  T    L AC+    L  GR I     H Y +  + E        C+ID+
Sbjct: 392 KNE--IKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY-----GCMIDL 444

Query: 507 YSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPD 562
              SG    A  +   +  + + V W SL+    MHG   LG+K  +A +  + E   P 
Sbjct: 445 LGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEK--FAQNLFKIEPNNPG 502

Query: 563 GVTFLVLLYACS 574
               L  +YA +
Sbjct: 503 SYVLLSNIYATA 514



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 128/297 (43%), Gaps = 34/297 (11%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y S      A ++   I      V  WNA+I   V       A  LF +MM+    
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVK--DVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE T   V+ A     S   G  VH+ I   GF SN+ + NAL+  Y++C  +  A  L
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F         D++SWN ++  Y      +  L+LF  M    +   D V++++ L ACA 
Sbjct: 253 F---LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPND-VTMLSILHACAH 308

Query: 253 LGTWSRGK----------------------------QCGMMEEAKKVFERMKVKDVVSWN 284
           LG    G+                            +CG +E A +VF  M  K + +WN
Sbjct: 309 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           AM+ G++  G    AF +F +MR+  +K + +T+  +++  +  G       +FR M
Sbjct: 369 AMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSM 425


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/707 (37%), Positives = 404/707 (57%), Gaps = 35/707 (4%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D      V++   +    R G  +HA++  +G+    F+ N L+ MY++C  L +A +LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACA 251
           D M Q    ++VSW  +++  +Q+      +  F   R+ G+V  Q    +  +A+ ACA
Sbjct: 64  DTMPQR---NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQ---FAFSSAIRACA 117

Query: 252 SLGTWSRGKQ--CGMMEEA--KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           SLG+   GKQ  C  ++     ++F    ++D+         YS+ G+  DA  +F++M 
Sbjct: 118 SLGSIEMGKQMHCLALKFGIGSELFVGSNLEDM---------YSKCGAMFDACKVFEEMP 168

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            ++     V+W+A+I GY++ G   EAL  F++M    +  +   L S L  C ++ A  
Sbjct: 169 CKDE----VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACK 224

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G+  H   +K           D+ V NAL DMY+K   ++ A  +F  I  + R+V ++
Sbjct: 225 FGRSVHSSVVKL------GFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSY 277

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T +I  Y +       L++F ++ +Q   ++PN FT S  + ACA  AAL  G Q+HA V
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVELRRQG--IEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           ++  ++   PFV++ L+DMY + G ++ A   FD +     ++W SL++ +G HGLG  A
Sbjct: 336 MKINFDE-DPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F++M   G+ P+ +TF+ LL  CSH+G+V++GL YF SM K +G+    EHY+C++D
Sbjct: 395 IKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LLGRA RL EA E I  MP EP    W + L  CRIH + E+G+LAA +L++LE +  G+
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
             LLSNIYAN  +W+DV  +R  M+   VKK PG SWV     T  F   D +HP+   I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAI 574

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
           YE L  L+ +IKA GYVP+T     D+DD  K  LL  HSE++A+A+ +++   G PI +
Sbjct: 575 YEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIV 634

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+C DCHSAI FIS +   +II+RD++RFHHF +GSC+C  YW
Sbjct: 635 KKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 228/503 (45%), Gaps = 31/503 (6%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +HL+  Y        AL L   +     ++  W A+I    +      A R F  M   G
Sbjct: 44  NHLVNMYSKCGELDHALKLFDTMPQR--NLVSWTAMISGLSQNSKFSEAIRTFCGMRICG 101

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P ++ F   ++AC  L S   G  +H +    G  S +FV + L  MY++C  +  A 
Sbjct: 102 EVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDAC 161

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++F+EM      D VSW  ++  Y++ G+ E  L+ F +M  D +V  D   L + L AC
Sbjct: 162 KVFEEM---PCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI-DEEVTIDQHVLCSTLGAC 217

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
            +L     G+        K  FE     D+   NA+   YS+ G  E A  +F     ++
Sbjct: 218 GALKACKFGRSV-HSSVVKLGFE----SDIFVGNALTDMYSKAGDMESASNVFG---IDS 269

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              NVV+++ +I GY +     + L VF +++  G+EPN  T  SL+  CA+  AL  G 
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 329

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           + H   +K  ++ D    +D  V + L+DMY KC  ++ A   FD I         W  +
Sbjct: 330 QLHAQVMK--INFD----EDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE--IAWNSL 381

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           +  + Q+G   DA+ +F +M   D+ VKPNA T    L  C+    +  G   + Y +  
Sbjct: 382 VSVFGQHGLGKDAIKIFERMV--DRGVKPNAITFISLLTGCSHAGLVEEGLD-YFYSMDK 438

Query: 491 QYEMLIPFVA--NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
            Y  ++P     +C+ID+  R+G +  A+   + +  + N   W S +    +HG  +  
Sbjct: 439 TYG-VVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMG 497

Query: 548 HWAFDQMRKEGLAPDGVTFLVLL 570
             A +++ K  L P     LVLL
Sbjct: 498 KLAAEKLVK--LEPKNSGALVLL 518



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 23/265 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  +  LI   V     +    +F+++ R+G  P+E+TF  ++KAC    +   G+ +H
Sbjct: 273 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +    FD + FV + L+ MY +C  L  A Q FDE+  P     ++WN++V+ + Q G
Sbjct: 333 AQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDP---TEIAWNSLVSVFGQHG 389

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM-KV 277
             +  + +F RM  D  V+ + ++ ++ L+ C+           G++EE    F  M K 
Sbjct: 390 LGKDAIKIFERMV-DRGVKPNAITFISLLTGCS---------HAGLVEEGLDYFYSMDKT 439

Query: 278 KDVVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             VV     ++ ++    R G  ++A     +M  E    N   W + +   A R HG +
Sbjct: 440 YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEP---NAFGWCSFLG--ACRIHGDK 494

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLS 358
            +      +   LEP     + LLS
Sbjct: 495 EMGKLAAEKLVKLEPKNSGALVLLS 519


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/733 (37%), Positives = 419/733 (57%), Gaps = 26/733 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN ++    +    + A  L+ +M+  G  PD YTFP VL++CG +P    G  VHA
Sbjct: 160 VFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHA 219

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   G    V V NAL+ MYA+C  +  AR++FD M    + D +SWN ++A + ++ +
Sbjct: 220 HVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGM---SLTDCISWNAMIAGHFENHE 276

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            E GL LF  M  D +V+ + +++ +   A   L      K+   +       +R    D
Sbjct: 277 CEAGLELFLHMLED-EVEPNLMTITSVTVASGLLSDLDFAKEIHAL-----AVKRGFATD 330

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   N+++  YS +G   +A  +F +M   +     ++W+A+I+GY + G   +AL+V+ 
Sbjct: 331 VAFCNSLIQMYSSLGRMGEACTVFSRMETRDA----MSWTAMISGYEKNGFPDKALEVYA 386

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+   + P+ VT+ S L+ CAS+G L +G + H       L+        ++V NAL++
Sbjct: 387 LMEVNNVSPDDVTVASALAACASLGRLDVGIKLH------ELATSKGFIRYIVVANALVE 440

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAK K ++ A  +F  +   ++DV +W+ MI  +  N    +AL  F  M      VKP
Sbjct: 441 MYAKSKIIEKAIEVFKYM--PDKDVISWSSMIAGFCFNHKNFEALYYFRHMLAD---VKP 495

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N+ T   AL ACA   +LR G++IHA+VLR Q      +V N L+D+Y + G    A   
Sbjct: 496 NSVTFIAALAACAATGSLRCGKEIHAHVLR-QGIASEGYVPNALLDLYVKCGQTGYAWAQ 554

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F     ++VVSW  ++ G+  HG GD A   F++M + G  PD VTF+ LL  CS +GMV
Sbjct: 555 FGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMV 614

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            QG + F SM++++ I    +HYAC+VDLL R  RL E    I  MP+ P   +W ALLN
Sbjct: 615 SQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLN 674

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
           GCRIH N+ELGELAA  +LELE    G + LLS++YA+AG W +V+++R  M+  G++  
Sbjct: 675 GCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHD 734

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
            GCSWV+ K     F   D +HPQ ++I ++L G+ +R+KA G+ P  S++L D  +  K
Sbjct: 735 YGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLED-KEVSK 793

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
            D+L  HSE+LA+A+G++ T PGT I +TKN   C  CH  +  IS I+  EI +RD+  
Sbjct: 794 DDVLCGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKE 853

Query: 820 FHHFKEGSCTCKG 832
           FHHF++GSC+C G
Sbjct: 854 FHHFRDGSCSCGG 866



 Score =  176 bits (445), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 196/370 (52%), Gaps = 26/370 (7%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NAM++   R G    A+ +F KM + +V     +W+ ++ GY + G   EALD++ +M +
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDV----FSWNVMVGGYGKAGFLEEALDLYHRMLW 188

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G  P+V T   +L  C  V  L +G+E H + ++  L V      ++ V+NAL+ MYAK
Sbjct: 189 AGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGV------EVDVLNALVTMYAK 242

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V+ AR +FD ++    D  +W  MI  + +N      L LF  M + +  V+PN  T
Sbjct: 243 CGDVEAARKVFDGMSLT--DCISWNAMIAGHFENHECEAGLELFLHMLEDE--VEPNLMT 298

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++   +A   L+ L F ++IHA  ++  +   + F  N LI MYS  G +  A  VF  +
Sbjct: 299 ITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAF-CNSLIQMYSSLGRMGEACTVFSRM 357

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           + R+ +SWT++++GY  +G  DKA   +  M    ++PD VT    L AC+  G +D G+
Sbjct: 358 ETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGI 417

Query: 584 KYFD-SMSKEF---GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           K  + + SK F    + A A     +V++  ++  +++A+E+ + MP +   I W +++ 
Sbjct: 418 KLHELATSKGFIRYIVVANA-----LVEMYAKSKIIEKAIEVFKYMP-DKDVISWSSMIA 471

Query: 640 G-CRIHANVE 648
           G C  H N E
Sbjct: 472 GFCFNHKNFE 481



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N ++ M  R G+   A  VF  + +R+V SW  ++ GYG  G  ++A   + +M   G
Sbjct: 131 LGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG 190

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
             PD  TF  +L +C     +  G +    + + FG+    +    +V +  +   ++ A
Sbjct: 191 ARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLR-FGLGVEVDVLNALVTMYAKCGDVEAA 249

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
            ++ +GM +    I W A++ G   +   E G      +LE E E +
Sbjct: 250 RKVFDGMSLTDC-ISWNAMIAGHFENHECEAGLELFLHMLEDEVEPN 295


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 287/783 (36%), Positives = 432/783 (55%), Gaps = 37/783 (4%)

Query: 67  HVPPSHLIA--------------AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR 112
           H PPS  I+               ++S    + A  +  RI P+P     +NALIR    
Sbjct: 20  HRPPSGSISYEVKDKKQWQQELEQHISRGQLALARQVFDRI-PAP-DARAYNALIRAYSW 77

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
           L     A  L+  M+R    P++YTFPFVLKAC  L   R G ++HA   ++G  +++FV
Sbjct: 78  LGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFV 137

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
             AL+ +Y RC     AR +F +M    + D+V+WN ++A YA  G     +     M  
Sbjct: 138 STALIDLYIRCARFGPARNVFAKM---PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD 194

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
              ++ +  +LV+ L   A  G   +G    +     +       + V+   A++  Y++
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQG--TSIHAYCLRACLEQNEEQVLIGTALLDMYAK 252

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVV 351
                 A  +F  M   N     VTWSA+I G+       EA ++F+ M   GL   +  
Sbjct: 253 CKQLVYACRVFHGMPVRND----VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           ++ S L  CAS+  L +G + H    K      G H D L   N+L+ MYAK   ++ A 
Sbjct: 309 SVASALRVCASLADLHMGTQLHALIAK-----SGIHAD-LTASNSLLSMYAKAGLINEAT 362

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
           + FD IA K  D  ++  ++    QNG A +A  +F +M  Q   ++P+  T+   + AC
Sbjct: 363 MFFDEIAVK--DTISYGALLSGCVQNGKAEEAFLVFKKM--QACNMEPDIATMVSLIPAC 418

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           + LAAL+ G+  H  V+     +    + N LIDMY++ G ID +R VFD +  R+VVSW
Sbjct: 419 SHLAALQHGKCSHGSVIIRGLALETS-ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSW 477

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            +++ GYG+HGLG +A   F  M+ +G APD VTF+ L+ ACSHSG+V +G  +FD+M+ 
Sbjct: 478 NTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTH 537

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           ++GI  R EHY C+VDLL R   LDEA + I+ MP++    +W ALL  CRIH N++LG+
Sbjct: 538 KYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 597

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
             +  + +L  E  G++ LLSNI++ AGR+ + A +R + K  G KK PG SW++     
Sbjct: 598 QVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F  GD++HP S+ IY  L  ++  IK +GY   TSF L D+++EEK   L  HSEKLA
Sbjct: 658 HAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLA 717

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+G+L+      I +TKNLR+CGDCH+AI +++++ N  II+RD+NRFHHFK G C+C 
Sbjct: 718 IAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCG 777

Query: 832 GYW 834
            +W
Sbjct: 778 NFW 780


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 290/794 (36%), Positives = 427/794 (53%), Gaps = 92/794 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           +LR+C  L        Q+ +Q  T    S+ IA Y  +     A  +         +V  
Sbjct: 8   ILRRCMML--------QVRLQCTT--SSSYAIACYARNGQLDHARKVFDETPLPHRTVSS 57

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA++      R P  A  LF +M +R                                 
Sbjct: 58  WNAMVAAYFEARQPREALLLFEKMPQR--------------------------------- 84

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                 N    N L++ + +   LS AR++FD M      ++VSW ++V  Y ++GD   
Sbjct: 85  ------NTVSWNGLISGHIKNGMLSEARRVFDTMPDR---NVVSWTSMVRGYVRNGDVAE 135

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF  M              N +S    LG      Q G +++A+K+F+ M  KDVV+
Sbjct: 136 AERLFWHMPHK-----------NVVSWTVMLGGLL---QEGRVDDARKLFDMMPEKDVVA 181

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              M+ GY   G  ++A ALF +M     K NVVTW+A+++GYA+ G     +DV R++ 
Sbjct: 182 VTNMIGGYCEEGRLDEARALFDEM----PKRNVVTWTAMVSGYARNG----KVDVARKLF 233

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMY 401
               E N V+  ++L G            TH   ++   S+  + P   ++V N +I  +
Sbjct: 234 EVMPERNEVSWTAMLLGY-----------THSGRMREASSLFDAMPVKPVVVCNEMIMGF 282

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
                VD AR +F  +  K RD  TW+ MI  Y + G   +AL LF +M  Q + +  N 
Sbjct: 283 GLNGEVDKARRVFKGM--KERDNGTWSAMIKVYERKGYELEALGLFRRM--QREGLALNF 338

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            +L   L  C  LA+L  G+Q+HA ++R++++  + +VA+ LI MY + G++  A+ VF+
Sbjct: 339 PSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDL-YVASVLITMYVKCGNLVRAKQVFN 397

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
               ++VV W S++TGY  HGLG++A   F  M   G+ PD VTF+ +L ACS+SG V +
Sbjct: 398 RFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKE 457

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           GL+ F++M  ++ +    EHYAC+VDLLGRA++++EA++L+E MPMEP  I+W ALL  C
Sbjct: 458 GLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGAC 517

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R H  ++L E+A  +L +LE +  G Y LLSN+YA  GRW+DV  +R  +K   V K PG
Sbjct: 518 RTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPG 577

Query: 702 CSWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           CSW++ ++    F  GD + HP+   I ++L  L   ++  GY P  SF LHDVD+EEK 
Sbjct: 578 CSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKT 637

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             L  HSEKLA+AYG+L    G PIR+ KNLR+CGDCHSAI  I+ +   EIILRD+NRF
Sbjct: 638 HSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRF 697

Query: 821 HHFKEGSCTCKGYW 834
           HHFK+G C+CK YW
Sbjct: 698 HHFKDGHCSCKDYW 711



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 109/276 (39%), Gaps = 77/276 (27%)

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD------------------ 521
           GR I    +  Q  +     ++  I  Y+R+G +D AR VFD                  
Sbjct: 5   GRAILRRCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAA 64

Query: 522 ---------------NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK---------- 556
                           + QRN VSW  L++G+  +G+  +A   FD M            
Sbjct: 65  YFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMV 124

Query: 557 EGLAPDG-----------------VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
            G   +G                 V++ V+L      G VD   K FD M ++  ++   
Sbjct: 125 RGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVA--- 181

Query: 600 EHYACIVDLLG---RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
                + +++G      RLDEA  L + MP +   + W A+++G   +  V++    A +
Sbjct: 182 -----VTNMIGGYCEEGRLDEARALFDEMP-KRNVVTWTAMVSGYARNGKVDV----ARK 231

Query: 657 LLELESEKDG-SYTLLSNIYANAGRWKDVARIRSLM 691
           L E+  E++  S+T +   Y ++GR ++ + +   M
Sbjct: 232 LFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM 267


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/738 (36%), Positives = 407/738 (55%), Gaps = 29/738 (3%)

Query: 100  VFWWNALIRRAVRLRLPDN--AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            VF WN  +     L   DN  A   F+ M       D  T   VL A         G  V
Sbjct: 869  VFCWNKKLSEC--LWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926

Query: 158  HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            H +   SG DS+V V N+L+ MY++     +AR++F++M      D++SWN+++++ AQS
Sbjct: 927  HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH---LDLISWNSMISSCAQS 983

Query: 218  GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-GTWSRGKQCGMMEEAKKVFERMK 276
               E  + LF  +  +  ++ D  +L + L AC+SL    +  +Q  +        +   
Sbjct: 984  SLEEESVNLFIDLLHE-GLKPDHFTLASVLRACSSLIDGLNISRQIHV-----HALKTGN 1037

Query: 277  VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            + D      ++  YS+ G  E+A  LF    Q    L++  W+A++ GY     G +AL+
Sbjct: 1038 IADSFVATTLIDVYSKSGKMEEAEFLF----QNKDDLDLACWNAMMFGYIIGNDGKKALE 1093

Query: 337  VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            +F  +   G + + +TL +    C  +  L  GK+ H + IK           DL V + 
Sbjct: 1094 LFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK------AGFDSDLHVNSG 1147

Query: 397  LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
            ++DMY KC  +  A ++F+ I+  + DVA WT MI     NG  + AL ++ +M Q    
Sbjct: 1148 ILDMYIKCGDMVNAGIVFNYISAPD-DVA-WTSMISGCVDNGNEDQALRIYHRMRQS--R 1203

Query: 457  VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            V P+ +T +  + A + + AL  GRQ+HA V++    +  PFV   L+DMY++ G+I+ A
Sbjct: 1204 VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDC-VSDPFVGTSLVDMYAKCGNIEDA 1262

Query: 517  RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
              +F  +  RN+  W +++ G   HG  ++A   F  M+  G+ PD V+F+ +L ACSH+
Sbjct: 1263 YRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHA 1322

Query: 577  GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
            G+  +  +Y  SM  ++GI    EHY+C+VD LGRA  + EA ++IE MP + +  I  A
Sbjct: 1323 GLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRA 1382

Query: 637  LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
            LL  CRI  +VE G+  A RL  LE     +Y LLSNIYA A RW DV   R +MK   V
Sbjct: 1383 LLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNV 1442

Query: 697  KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
            KK PG SW+  K     F V DR+HPQ+  IY+ +  +++ I+  GYVP T F L DV+D
Sbjct: 1443 KKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVED 1502

Query: 757  EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
            EEK   L+ HSEKLA+AYG+++T   T IR+ KNLR+CGDCH+AI +IS +   EI+LRD
Sbjct: 1503 EEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRD 1562

Query: 817  SNRFHHFKEGSCTCKGYW 834
            +NRFHHF++G C+C  YW
Sbjct: 1563 ANRFHHFRDGVCSCGDYW 1580



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 153/566 (27%), Positives = 258/566 (45%), Gaps = 90/566 (15%)

Query: 154  GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            G   HA I  SG   + F+ N L+ MY++C +LS ARQ+FD   +    D+V+WN I+ A
Sbjct: 640  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPER---DLVTWNAILGA 696

Query: 214  YAQS-----GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG-TWSRG-------- 259
            YA S     G+A+ GL LF  +   +      ++L   L  C + G  W+          
Sbjct: 697  YAASVDSNDGNAQEGLHLFRLLRASLG-STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 755

Query: 260  -----------------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
                              +CG M +A+ +F+ M+ +DVV WN M+ GY ++G  ++AF L
Sbjct: 756  IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 815

Query: 303  FKKMRQENVK------------LNVVTW------SAVIAGYAQR---------------- 328
            F +  +  ++            ++ V W      +  +  YA +                
Sbjct: 816  FSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKK 875

Query: 329  -------GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
                   G    A++ F  M    ++ + VTL+ +L+  A    L LGK+ H   +K  L
Sbjct: 876  LSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGL 935

Query: 382  SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
              D S      V N+L++MY+K      AR +F+ +  K+ D+ +W  MI S +Q+    
Sbjct: 936  DSDVS------VANSLVNMYSKMGCAYFAREVFNDM--KHLDLISWNSMISSCAQSSLEE 987

Query: 442  DALALFPQMFQQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVA 500
            +++ LF  +  +   +KP+ FTL+  L AC+ L   L   RQIH + L+    +   FVA
Sbjct: 988  ESVNLFIDLLHEG--LKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTG-NIADSFVA 1044

Query: 501  NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
              LID+YS+SG ++ A  +F N    ++  W ++M GY +   G KA   F  + K G  
Sbjct: 1045 TTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEK 1104

Query: 561  PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
             D +T      AC    ++DQG K   + + + G  +     + I+D+  +   +  A  
Sbjct: 1105 SDQITLATAAKACGCLVLLDQG-KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-G 1162

Query: 621  LIEGMPMEPTPIIWVALLNGCRIHAN 646
            ++      P  + W ++++GC  + N
Sbjct: 1163 IVFNYISAPDDVAWTSMISGCVDNGN 1188



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 16/224 (7%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL    S   LLLGK TH   +     V GS  D  +  N L+ MY+KC S+  AR +FD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIV-----VSGSAGDHFLS-NNLLTMYSKCGSLSSARQVFD 680

Query: 416 AIAPKNRDVATWTVMIGSY-----SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
                 RD+ TW  ++G+Y     S +G A + L LF  +  +  L      TL+  L  
Sbjct: 681 TTP--ERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLL--RASLGSTTRMTLAPVLKL 736

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           C     L     +H Y ++   E  + FV+  L+++YS+ G +  AR++FD +++R+VV 
Sbjct: 737 CLNSGCLWAAEGVHGYAIKIGLEWDV-FVSGALVNIYSKCGRMRDARLLFDWMRERDVVL 795

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           W  ++ GY   GL  +A   F +  + GL PD  +  ++L   S
Sbjct: 796 WNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 274/737 (37%), Positives = 409/737 (55%), Gaps = 29/737 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE-LPSSRCGSSVHAVI 161
           W  LI    +  +P++A  +  +M+  G+ P+ + F   ++AC E +   R G  VH   
Sbjct: 69  WACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYA 128

Query: 162 CSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             +G  D+ V V N L+ MYA+C  + +AR +F  M      D VSWN+++    Q+   
Sbjct: 129 IRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDK---DSVSWNSMITGLDQNKCF 185

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E  +  +  M     +     +L++ALS+CASLG    G+Q     E  K+   M V   
Sbjct: 186 EDAVKSYNSMR-KTGLMPSNFALISALSSCASLGCILLGQQ--THGEGIKLGLDMDVSVS 242

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG-HEALDVFR 339
            +  A+    SR+   +  F+   +  Q       V+W+ VI   A  G    EA++VF 
Sbjct: 243 NTLLALYAETSRLAECQKVFSWMLERDQ-------VSWNTVIGALADSGASVSEAIEVFL 295

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M   G  PN VT ++LL+  +S+    L  + H   +K  +       DD  + NAL+ 
Sbjct: 296 EMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNV------KDDNAIENALLA 349

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            Y K   ++    +F  ++ + RD  +W  MI  Y  N     A+ L   M Q+ +  + 
Sbjct: 350 CYGKSGEMENCEEIFSRMSER-RDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQ--RL 406

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           + FT +  L ACA +A L  G ++HA  +R   E  +  + + L+DMYS+ G ID A   
Sbjct: 407 DCFTFATVLSACATVATLECGMEVHACAIRACLESDV-VIGSALVDMYSKCGRIDYASRF 465

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F+ +  RN+ SW S+++GY  HG GD A   F +M+  G  PD +TF+ +L ACSH G+V
Sbjct: 466 FNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLV 525

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D+G +YF SM++ +G+  R EHY+C+VDLLGRA  LD+    I  MP++P  +IW  +L 
Sbjct: 526 DEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLG 585

Query: 640 G-CRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
             CR +    ELG  AA  L  ++ +   +Y LLSN+YA+ G+W+D+AR R  M+   VK
Sbjct: 586 ACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVK 645

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
           K  GCSWV  K+G   F  GD +HP+   IY  L  L ++I+  GYVPQ  FAL+D++ E
Sbjct: 646 KEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPE 705

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            K +LL  HSEKLA+A+ +LT   G PIRI KNLR+CGDCHSA  +IS +++  I+LRDS
Sbjct: 706 NKEELLSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDS 764

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHF++G C+C+ YW
Sbjct: 765 NRFHHFEDGKCSCRDYW 781



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 231/519 (44%), Gaps = 82/519 (15%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   GFDS++F+CN L+ +Y R      AR+LFDEM      + V+W  +++ Y Q+
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDR---NGVTWACLISGYTQN 79

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR-GKQ--------------- 261
           G  E    +   M  +  +  +  +  +A+ AC     W R G+Q               
Sbjct: 80  GMPEDACGVLKEMIFEGFLP-NRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKV 138

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       CG ++ A+ VF  M  KD VSWN+M+TG  +   FEDA   +  MR+ 
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
                                              GL P+   L+S LS CAS+G +LLG
Sbjct: 199 -----------------------------------GLMPSNFALISALSSCASLGCILLG 223

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           ++TH   IK  L +D S  + L+ + A     A+C+ V      F  +    RD  +W  
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV------FSWMLE--RDQVSWNT 275

Query: 430 MIGSYSQNGGA-NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           +IG+ + +G + ++A+ +F +M +      PN  T    L   + L+  +   QIHA +L
Sbjct: 276 VIGALADSGASVSEAIEVFLEMMRAG--WSPNRVTFINLLATVSSLSTSKLSHQIHALIL 333

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMHGLGDKA 547
           +   +     + N L+  Y +SG+++    +F  + ++R+ VSW S+++GY  + L  KA
Sbjct: 334 KYNVKD-DNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKA 392

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
                 M + G   D  TF  +L AC+    ++ G++   + +    + +     + +VD
Sbjct: 393 MDLVWLMMQRGQRLDCFTFATVLSACATVATLECGME-VHACAIRACLESDVVIGSALVD 451

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           +  +  R+D A      MP+      W ++++G   H +
Sbjct: 452 MYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHGH 489



 Score = 40.4 bits (93), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL 148
           +++ WN++I    R    DNA RLF +M   G  PD  TF  VL AC  +
Sbjct: 473 NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHI 522


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 279/800 (34%), Positives = 444/800 (55%), Gaps = 42/800 (5%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH-VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           L+ +  +L Q+   H QII+  L + +     +   +SH       SLL    P+P  +F
Sbjct: 16  LINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNP-DLF 74

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            +N LIR       P +A  L+  + +     PD +T+ FV+     L       +   V
Sbjct: 75  LYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIV 134

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
              +GF S++FV +A++A Y +   ++ AR++FD M +    D V WNT+V+   ++   
Sbjct: 135 ---AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLER---DTVLWNTMVSGLVKNSCF 188

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMKVK 278
           +  +++F  M     +  D  ++   L   A L   + G   QC  M   K  F      
Sbjct: 189 DEAILIFGDMVKG-GIGFDSTTVAAVLPGVAELQDLALGMGIQCLAM---KVGFH----- 239

Query: 279 DVVSWNAMVTG----YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
              S   ++TG    YS+ G  E A  LF ++ Q ++    V+++A+I+GY        +
Sbjct: 240 ---SHAYVITGLACLYSKCGEIETARLLFGQIGQPDL----VSYNAMISGYTCNNETESS 292

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           + +F+++   G + N  ++V L+      G L L +  H +  K  +  +        V 
Sbjct: 293 VRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSN------SSVS 346

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            AL  +Y++   ++ AR++FD  + K+  +A+W  MI  Y+QNG    A++LF +M  Q 
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKS--LASWNAMISGYAQNGLTEKAISLFQEM--QK 402

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             V+PN  T++  L ACA+L AL  G+ +H  + R  +E  I FV+  LIDMY++ G I 
Sbjct: 403 CEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNI-FVSTALIDMYAKCGSIT 461

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A+ +F  + ++N V+W ++++GYG+HG G +A   F++M    ++P GVTFL +LYACS
Sbjct: 462 EAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACS 521

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H+G+V +G + F SM  + G     EHYAC+VDLLGRA  LD+A++ I  MP+EP P +W
Sbjct: 522 HAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVW 581

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL  C IH +  L  LA+++L EL+ +  G Y LLSNIY+    + + A +R ++K  
Sbjct: 582 GALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRR 641

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
            + K PGC+ ++       F  GD++HPQ+  IY +L  L  +++  G+  +T  ALHDV
Sbjct: 642 KLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDV 701

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           ++EEK  ++  HSEKLA+A+G++T+ PGT IRI KNLR+C DCH+A  FIS I    I++
Sbjct: 702 EEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVV 761

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD+NRFHHFK+G C+C  YW
Sbjct: 762 RDANRFHHFKDGICSCGDYW 781


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 397/680 (58%), Gaps = 29/680 (4%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +HA +  +    + F  + ++A  A  D+  L YAR +F+++  P      + N+I+  Y
Sbjct: 59  IHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP---TTFTCNSIIRGY 115

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
                    ++ +  M     +QG         S   S G    GKQ       K  F  
Sbjct: 116 TNKNLPRQAILFYQLMM----LQGLDPDRFTFPSLFKSCGVLCEGKQLHC-HSTKLGF-- 168

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               D    N ++  YS  G    A  +F KM    V  +VV+W+ +I  YAQ    HEA
Sbjct: 169 --ASDAYIQNTLMNMYSNCGCLVSARKVFDKM----VNKSVVSWATMIGAYAQWDLPHEA 222

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           + +FR+M+   ++PN +TLV++L+ CA    L   K+ H Y  +  +   G H    ++ 
Sbjct: 223 IKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGI---GFH---TVLT 276

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           +AL+D+Y KC    +AR +F+ +  KN  +  W +MI  + ++    +AL+LF +M  Q 
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKN--LFCWNIMINGHVEDSDYEEALSLFNEM--QL 332

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             VK +  T++  L+AC  L AL  G+ +H Y+ + + E+ +  +   L+DMY++ G I+
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVA-LGTALVDMYAKCGSIE 391

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           +A  VF  + +++V++WT+L+ G  M G G KA   F +M+   + PD +TF+ +L ACS
Sbjct: 392 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H+G+V++G+ YF+SM  ++GI    EHY C+VD+LGRA R+ EA +LI+ MPM P   + 
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVL 511

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
           V LL+ CRIH N+ + E AA +L+EL+ +  G+Y LLSNIY++   W+   ++R LM   
Sbjct: 512 VGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVER 571

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
            +KK PGCS ++       F  GD +HPQS +IYE L  +++R+K+ GYVP  S  L D+
Sbjct: 572 NIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDM 631

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           D++EK + L  HSEKLA+A+G+L+T PGTPIR+ KNLR+C DCHSA+ FIS + N EII+
Sbjct: 632 DEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIV 691

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD NRFHHF +GSC+C+ +W
Sbjct: 692 RDRNRFHHFTKGSCSCRDFW 711



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 165/500 (33%), Positives = 252/500 (50%), Gaps = 50/500 (10%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPS-PALSLLQ 91
           PC+    L L +C +++Q+  IH Q++   L   P   S ++A    H++ S P   L+ 
Sbjct: 42  PCL----LSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVF 97

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
              P+P + F  N++IR      LP  A   +  MM +G  PD +TFP + K+CG L   
Sbjct: 98  NQIPNP-TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE- 155

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G  +H      GF S+ ++ N LM MY+ C  L  AR++FD+M       +VSW T++
Sbjct: 156 --GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS---VVSWATMI 210

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
            AYAQ       + LF RM     V+ + ++LVN L+ACA     SR      +E AK+V
Sbjct: 211 GAYAQWDLPHEAIKLFRRME-IASVKPNEITLVNVLTACAR----SRD-----LETAKQV 260

Query: 272 FERMKVKDV----VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
            + +    +    V  +A++  Y + G +  A  LF KM ++    N+  W+ +I G+ +
Sbjct: 261 HKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEK----NLFCWNIMINGHVE 316

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                EAL +F +MQ  G++ + VT+ SLL  C  +GAL LGK  H Y  K  + V    
Sbjct: 317 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV---- 372

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             D+ +  AL+DMYAKC S++ A  +F  +  K  DV TWT +I   +  G    AL LF
Sbjct: 373 --DVALGTALVDMYAKCGSIESAMRVFQEMPEK--DVMTWTALIVGLAMCGQGLKALELF 428

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV--LRNQYEMLIPFVAN--CL 503
            +M  Q   VKP+A T    L AC+    +  G    AY   + N+Y  + P + +  C+
Sbjct: 429 HEM--QMSEVKPDAITFVGVLAACSHAGLVNEGI---AYFNSMPNKYG-IQPSIEHYGCM 482

Query: 504 IDMYSRSGDIDTARVVFDNL 523
           +DM  R+G I  A  +  N+
Sbjct: 483 VDMLGRAGRIAEAEDLIQNM 502


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 287/783 (36%), Positives = 432/783 (55%), Gaps = 37/783 (4%)

Query: 67  HVPPSHLIA--------------AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR 112
           H PPS  I+               ++S    + A  +  RI P+P     +NALIR    
Sbjct: 20  HRPPSGSISYEVKDKKQWQQELEQHISRGQLALARQVFDRI-PAP-DARAYNALIRAYSW 77

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
           L     A  L+  M+R    P++YTFPFVLKAC  L   R G ++HA   ++G  +++FV
Sbjct: 78  LGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFV 137

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
             AL+ +Y RC     AR +F +M    + D+V+WN ++A YA  G     +     M  
Sbjct: 138 STALIDLYIRCARFGPARNVFAKM---PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD 194

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
              ++ +  +LV+ L   A  G   +G    +     +       + V+   A++  Y++
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQG--TSIHAYCLRACLEQNEEQVLIGTALLDMYAK 252

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVV 351
                 A  +F  M   N     VTWSA+I G+       EA ++F+ M   GL   +  
Sbjct: 253 CKQLVYACRVFHGMPVRND----VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           ++ S L  CAS+  L +G + H    K      G H D L   N+L+ MYAK   ++ A 
Sbjct: 309 SVASALRVCASLADLHMGTQLHALIAK-----SGIHAD-LTASNSLLSMYAKAGLINEAT 362

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
           + FD IA K  D  ++  ++    QNG A +A  +F +M  Q   ++P+  T+   + AC
Sbjct: 363 MFFDEIAVK--DTISYGALLSGCVQNGKAEEAFLVFKKM--QACNMEPDIATMVSLIPAC 418

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           + LAAL+ G+  H  V+     +    + N LIDMY++ G ID +R VFD +  R+VVSW
Sbjct: 419 SHLAALQHGKCSHGSVIIRGLALETS-ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSW 477

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            +++ GYG+HGLG +A   F  M+ +G APD VTF+ L+ ACSHSG+V +G  +FD+M+ 
Sbjct: 478 NTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTH 537

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           ++GI  R EHY C+VDLL R   LDEA + I+ MP++    +W ALL  CRIH N++LG+
Sbjct: 538 KYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 597

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
             +  + +L  E  G++ LLSNI++ AGR+ + A +R + K  G KK PG SW++     
Sbjct: 598 QVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F  GD++HP S+ IY  L  ++  IK +GY   TSF L D+++EEK   L  HSEKLA
Sbjct: 658 HAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLA 717

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+G+L+      I +TKNLR+CGDCH+AI +++++ N  II+RD+NRFHHFK G C+C 
Sbjct: 718 IAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCG 777

Query: 832 GYW 834
            +W
Sbjct: 778 NFW 780


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/640 (40%), Positives = 383/640 (59%), Gaps = 28/640 (4%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+ SWN+++A  A+SGD+   L+ F+ M   + +     S   A+ AC+SL     GKQ 
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMR-KLSLYPTRSSFPCAIKACSSLFDIFSGKQT 98

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                 ++ F      D+   +A++  YS  G  EDA    +K+  E  K ++V+W+++I
Sbjct: 99  -----HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA----RKVFDEIPKRDIVSWTSMI 149

Query: 323 AGYAQRGHGHEALDVFRQMQFC------GLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            GY   G+  +A+ +F+ +          +  + + LVS++S C+ V A  L +  H + 
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNRDVATWTVMIGSY 434
           IKR           + V N L+D YAK     V VAR +FD I  K+R   ++  ++  Y
Sbjct: 210 IKR------GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR--VSYNSIMSVY 261

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q+G +N+A  +F ++ + +K+V  NA TLS  L+A +   ALR G+ IH  V+R   E 
Sbjct: 262 AQSGMSNEAFEVFRRLVK-NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +  V   +IDMY + G ++TAR  FD +K +NV SWT+++ GYGMHG   KA   F  M
Sbjct: 321 DV-IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
              G+ P+ +TF+ +L ACSH+G+  +G ++F++M   FG+    EHY C+VDLLGRA  
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L +A +LI+ M M+P  IIW +LL  CRIH NVEL E++  RL EL+S   G Y LLS+I
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHI 499

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA+AGRWKDV R+R +MK+ G+ K PG S ++       F +GD  HPQ +KIYE LA L
Sbjct: 500 YADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAEL 559

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
            +++   GYV  TS   HDVD+EEK   L  HSEKLA+A+GI+ T PG+ + + KNLR+C
Sbjct: 560 NRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCH+ I  IS I++ E ++RD+ RFHHFK+G C+C  YW
Sbjct: 620 SDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 223/451 (49%), Gaps = 31/451 (6%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN++I    R      A   F  M +   +P   +FP  +KAC  L     G   H 
Sbjct: 41  VFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQ 100

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G+ S++FV +AL+ MY+ C  L  AR++FDE+ +    DIVSW +++  Y  +G+
Sbjct: 101 QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKR---DIVSWTSMIRGYDLNGN 157

Query: 220 AEGGLMLFARMTGDVKVQGDG-----VSLVNALSACASLGTWSRGKQCGMMEEAKK-VFE 273
           A   + LF  +  D     D      + LV+ +SAC      SR    G+ E     V +
Sbjct: 158 ALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC------SRVPAKGLTESIHSFVIK 211

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           R   + V   N ++  Y++ G  E   A+ +K+  + V  + V+++++++ YAQ G  +E
Sbjct: 212 RGFDRGVSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 334 ALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           A +VFR++ +   +  N +TL ++L   +  GAL +GK  H   I+  L       DD++
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL------EDDVI 323

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  ++IDMY KC  V+ AR  FD +  KN++V +WT MI  Y  +G A  AL LFP M  
Sbjct: 324 VGTSIIDMYCKCGRVETARKAFDRM--KNKNVRSWTAMIAGYGMHGHAAKALELFPAMI- 380

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFG-RQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            D  V+PN  T    L AC+       G R  +A   R   E  +     C++D+  R+G
Sbjct: 381 -DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG-CMVDLLGRAG 438

Query: 512 DIDTARVVFDNLKQR-NVVSWTSLMTGYGMH 541
            +  A  +   +K + + + W+SL+    +H
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 173/342 (50%), Gaps = 18/342 (5%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K +V +W++VIA  A+ G   EAL  F  M+   L P   +    +  C+S+  +  GK+
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           TH         V G +  D+ V +ALI MY+ C  ++ AR +FD I PK RD+ +WT MI
Sbjct: 98  THQQAF-----VFG-YQSDIFVSSALIVMYSTCGKLEDARKVFDEI-PK-RDIVSWTSMI 149

Query: 432 GSYSQNGGANDALALFPQMF----QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             Y  NG A DA++LF  +       D  +  ++  L   + AC+R+ A      IH++V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGD--IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           ++  ++  +  V N L+D Y++ G+  +  AR +FD +  ++ VS+ S+M+ Y   G+ +
Sbjct: 210 IKRGFDRGVS-VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 546 KAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           +A   F ++ K  +   + +T   +L A SHSG +  G    D + +  G+         
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTS 327

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           I+D+  +  R++ A +  + M  +     W A++ G  +H +
Sbjct: 328 IIDMYCKCGRVETARKAFDRMKNKNVR-SWTAMIAGYGMHGH 368


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/696 (36%), Positives = 394/696 (56%), Gaps = 62/696 (8%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
            + +Y+    L  AR LFD++ QP   D+ +W  +++A  + G +   +  +        
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQP---DLPTWTILISALTKHGRSLEAIQYYNDFRHKNC 73

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYS 291
           V+ D + L++   ACASL           +  AK+V E         DV+  NA++  Y 
Sbjct: 74  VEPDKLLLLSVAKACASLRD---------VMNAKRVHEDAIRFGFCSDVLLGNALIDMYG 124

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           +    E A  +F+ M   +V    ++W+++ + Y   G   EAL  FR+M   G  PN V
Sbjct: 125 KCRCSEGARLVFEGMPFRDV----ISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSV 180

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+ S+L  C  +  L  G+E H + ++  +        ++ V +AL++MYA C S+  A+
Sbjct: 181 TVSSILPACTDLKDLKSGREVHGFVVRNGMG------GNVFVSSALVNMYASCLSIRQAQ 234

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ------------------- 452
           ++FD+++   RD  +W V+I +Y  N      L++F +M                     
Sbjct: 235 LVFDSMS--RRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQ 292

Query: 453 --------------QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
                         Q+   KPN  T++  L AC  L +LR G+QIH Y+ R+ +   +  
Sbjct: 293 NGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLT- 351

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
               L+ MY++ GD++ +R VF  + +R+ VSW +++    MHG G++A   F +M   G
Sbjct: 352 TTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSG 411

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + P+ VTF  +L  CSHS +VD+GL  FDSMS++  +   A+H++C+VD+L RA RL+EA
Sbjct: 412 VRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEA 471

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            E I+ MP+EPT   W ALL GCR++ NVELG +AANRL E+ES+  G+Y LLSNI  +A
Sbjct: 472 YEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSA 531

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
             W + +  R LM+  GV K PGCSW+Q +    TF VGD+++ QS +IY  L  + +++
Sbjct: 532 KLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKM 591

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           +  GY+P T F L DVD EEK ++L  HSEKLA+A+G+L     + IR+ KNLRICGDCH
Sbjct: 592 RIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCH 651

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +AI F++ I+  +II+RDS RFHHF++G C+C+ +W
Sbjct: 652 NAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 224/505 (44%), Gaps = 51/505 (10%)

Query: 66  THVPPSHL----IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR 121
           T +PP HL    I  Y +      A  L  +I P P  +  W  LI    +      A +
Sbjct: 7   TSLPP-HLALKFIKVYSNSGDLQRARHLFDKI-PQP-DLPTWTILISALTKHGRSLEAIQ 63

Query: 122 LFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMY 180
            +     +    PD+     V KAC  L        VH      GF S+V + NAL+ MY
Sbjct: 64  YYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMY 123

Query: 181 ARCDTLSYARQLFDEM-FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
            +C     AR +F+ M F+    D++SW ++ + Y   G     L  F +M G    + +
Sbjct: 124 GKCRCSEGARLVFEGMPFR----DVISWTSMASCYVNCGLLREALGAFRKM-GLNGERPN 178

Query: 240 GVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFE 273
            V++ + L AC  L     G++                          C  + +A+ VF+
Sbjct: 179 SVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFD 238

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            M  +D VSWN ++T Y      E   ++F +M  E V LN  +W+AVI G  Q G   +
Sbjct: 239 SMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEK 298

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           AL+V  +MQ  G +PN +T+ S+L  C ++ +L  GK+ H Y  +           DL  
Sbjct: 299 ALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFF------QDLTT 352

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             AL+ MYAKC  ++++R +F  +    RD  +W  MI + S +G   +AL LF +M   
Sbjct: 353 TTALVFMYAKCGDLELSRRVFSMMT--KRDTVSWNTMIIATSMHGNGEEALLLFREMV-- 408

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
           D  V+PN+ T +  L  C+    +  G  I   + R+          +C++D+ SR+G +
Sbjct: 409 DSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRL 468

Query: 514 DTARVVFDNLK-QRNVVSWTSLMTG 537
           + A      +  +    +W +L+ G
Sbjct: 469 EEAYEFIKKMPIEPTAGAWGALLGG 493



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 6/180 (3%)

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           L P +A   I +YS SGD+  AR +FD + Q ++ +WT L++    HG   +A   ++  
Sbjct: 9   LPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDF 68

Query: 555 R-KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           R K  + PD +  L +  AC+    V    +  +   + FG  +       ++D+ G+  
Sbjct: 69  RHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIR-FGFCSDVLLGNALIDMYGKC- 126

Query: 614 RLDEAVELI-EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
           R  E   L+ EGMP     I W ++ + C ++  +    L A R + L  E+  S T+ S
Sbjct: 127 RCSEGARLVFEGMPFRDV-ISWTSMAS-CYVNCGLLREALGAFRKMGLNGERPNSVTVSS 184


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/643 (40%), Positives = 380/643 (59%), Gaps = 34/643 (5%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+ SWN+++A  A+SGD+   L  F+ M   + +     S   A+ AC+SL     GKQ 
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMR-KLSLYPTRSSFPCAIKACSSLLDIFSGKQT 98

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                 ++ F      D+   +A++  YS  G  EDA    +K+  E  K N+V+W+++I
Sbjct: 99  -----HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA----RKVFDEIPKRNIVSWTSMI 149

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPN---------VVTLVSLLSGCASVGALLLGKETH 373
            GY   G+  +A+ +F+ +    +E N          + +VS++S C+ V A  L +  H
Sbjct: 150 RGYDLNGNALDAVSLFKDLL---IEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIH 206

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNRDVATWTVMI 431
            + IKR      S      V N L+D YAK     V VAR +FD I  K+R   ++  ++
Sbjct: 207 SFVIKRGFDRGVS------VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR--VSYNSIM 258

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+Q+G +N+A  +F ++ ++ K+V  N  TLS  L+A +   ALR G+ IH  V+R  
Sbjct: 259 SVYAQSGMSNEAFDVFRRLIKE-KVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMG 317

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            E  +  V   +IDMY + G ++TAR+ FD +K +NV SWT+++ GYGMHG   KA   F
Sbjct: 318 LEDDV-IVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
             M   G+ P+ +TF+ +L ACSH+G+ D G  +F++M   FG+    EHY C+VDLLGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  L +A +LI+ M MEP  IIW +LL  CRIH NVEL E++  RL EL+    G Y LL
Sbjct: 437 AGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLL 496

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           S+IYA++GRWKDV R+R  MK+ G+ K PG S ++       F +GD  HPQ +KIYE L
Sbjct: 497 SHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
           A L +++   GYV  TS   HDVD+EEK   L  HSEKLA+A+GI+ T PG+ + + KNL
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCH+ I  IS I++ E ++RD+ RFHHFK+G C+C  YW
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 225/451 (49%), Gaps = 31/451 (6%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN++I    R      A R F  M +   +P   +FP  +KAC  L     G   H 
Sbjct: 41  VFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQ 100

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G+ S++FV +AL+ MY+ C  L  AR++FDE+ +    +IVSW +++  Y  +G+
Sbjct: 101 QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKR---NIVSWTSMIRGYDLNGN 157

Query: 220 AEGGLMLFARM-----TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK-VFE 273
           A   + LF  +       D  +  D + +V+ +SAC      SR    G+ E     V +
Sbjct: 158 ALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISAC------SRVAAKGLTESIHSFVIK 211

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           R   + V   N ++  Y++ G  E   A+ +K+  + V  + V+++++++ YAQ G  +E
Sbjct: 212 RGFDRGVSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 334 ALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           A DVFR++ +   +  N +TL ++L   +  GAL +GK  H   I+  L       DD++
Sbjct: 270 AFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGL------EDDVI 323

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  ++IDMY KC  V+ AR+ FD +  KN++V +WT MI  Y  +G A  AL LFP M  
Sbjct: 324 VGTSIIDMYCKCGRVETARLAFDRM--KNKNVRSWTAMIAGYGMHGHAAKALELFPAMI- 380

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFG-RQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            D  V+PN  T    L AC+       G    +A   R   E  +     C++D+  R+G
Sbjct: 381 -DSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYG-CMVDLLGRAG 438

Query: 512 DIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            +  A  +   +K + + + W+SL+    +H
Sbjct: 439 FLQKAYDLIQKMKMEPDSIIWSSLLAACRIH 469



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 174/342 (50%), Gaps = 18/342 (5%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K +V +W++VIA  A+ G   EAL  F  M+   L P   +    +  C+S+  +  GK+
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQ 97

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           TH         V G +  D+ V +ALI MY+ C  ++ AR +FD I PK R++ +WT MI
Sbjct: 98  THQQAF-----VFG-YQSDIFVSSALIVMYSTCGKLEDARKVFDEI-PK-RNIVSWTSMI 149

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM----ACARLAALRFGRQIHAYV 487
             Y  NG A DA++LF  +  ++       F  S  ++    AC+R+AA      IH++V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFV 209

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGD--IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           ++  ++  +  V N L+D Y++ G+  +  AR +FD +  ++ VS+ S+M+ Y   G+ +
Sbjct: 210 IKRGFDRGVS-VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 546 KAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           +A   F ++ KE +   + +T   +L A SHSG +  G    D + +  G+         
Sbjct: 269 EAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTS 327

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           I+D+  +  R++ A    + M  +     W A++ G  +H +
Sbjct: 328 IIDMYCKCGRVETARLAFDRMKNKNVR-SWTAMIAGYGMHGH 368


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/742 (36%), Positives = 409/742 (55%), Gaps = 38/742 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+   ++  +  +   LF +M   G  P+ +TF  VL           G  VH
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH 180

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A     G  S VFVCN+LM MYA+C  +  AR +F  M      D+VSWNT++A    +G
Sbjct: 181 AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR---DMVSWNTLMAGLVLNG 237

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF      + +  +  +    ++ CA+L      K  G+   A+++   +   
Sbjct: 238 RDLEALQLFHDSRSSITMLTES-TYSTVINLCANL------KHLGL---ARQLHSSVLKH 287

Query: 279 DVVSW----NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
              S+     A++  Y++ G  + A  +F  M       NVV+W+A+I G  Q G    A
Sbjct: 288 GFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQ---NVVSWTAMIDGCIQNGDIPLA 344

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             +F +M+  G+ PN +T  ++L+    V       + H   IK       +      V 
Sbjct: 345 AALFSRMREDGVAPNDLTYSTILT----VSEASFPPQIHAQVIKTNYECTPT------VG 394

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            AL+  Y+K  S + A  +F  I    +DV +W+ M+  Y+Q G  N A   F +M    
Sbjct: 395 TALMVSYSKLCSTEEALSIFKMI--DQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHG 452

Query: 455 KLVKPNAFTLSCALMACARLAA-LRFGRQIHAYVLRNQ-YEMLIPFVANCLIDMYSRSGD 512
             +KPN FT+S A+ ACA  AA +  GRQ HA  ++++ ++ L   V++ L+ MY+R G 
Sbjct: 453 --LKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALC--VSSALVSMYARKGS 508

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           I+ A+ VF+    R+++SW S+++GY  HG   KA   F QM  EG+  DG+TFL ++  
Sbjct: 509 IENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMG 568

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+H+G+V++G +YFD M +++GI+   +HYAC+VDL  RA +LDE + LIEGMP    P 
Sbjct: 569 CAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPT 628

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           IW ALL  CR+H NVELG+LAA +LL LE     +Y LLSNIY+ AG+WK+   +R LM 
Sbjct: 629 IWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMD 688

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
              V+K  GCSW+Q K     F   D++HP S++IY  L  +  ++K  GY P TSF  H
Sbjct: 689 TKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPH 748

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           DV +++K  +L  HSE+LALA+G++ T P  P+ I KNLR+ GD H+ +  +S I + EI
Sbjct: 749 DVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREI 808

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           ++RD  RFHHFK G C+C  +W
Sbjct: 809 VMRDCCRFHHFKSGVCSCGDFW 830



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 153/293 (52%), Gaps = 16/293 (5%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+    ++V  Y    S  D   +F+ M    +K NVVTW++++ GY Q G   + + +F
Sbjct: 90  DIRVGTSLVDMYMNWHSVLDGRKVFEGM----LKRNVVTWTSLLTGYIQAGVLLDVMSLF 145

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+  G+ PN  T  S+LS  AS G + LG+  H  +IK            + V N+L+
Sbjct: 146 FRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCC------STVFVCNSLM 199

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           +MYAKC  V+ ARV+F  +  + RD+ +W  ++     NG   +AL LF     +  +  
Sbjct: 200 NMYAKCGLVEEARVVFCRM--ETRDMVSWNTLMAGLVLNGRDLEALQLFHD--SRSSITM 255

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
               T S  +  CA L  L   RQ+H+ VL++ +      V   L+D Y+++G +D A  
Sbjct: 256 LTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSY-GNVMTALMDAYNKAGQLDKALD 314

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           VF  +   +NVVSWT+++ G   +G    A   F +MR++G+AP+ +T+  +L
Sbjct: 315 VFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 161/340 (47%), Gaps = 26/340 (7%)

Query: 328 RGHGHEALDVF-----RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G  H+ALD F     RQ +  G       L+ ++  C SV   +LGK+ H   ++    
Sbjct: 32  QGFVHQALDHFLDAHRRQGRCVGGG----ALLGIIKICGSVPDRVLGKQLHALCVRC--- 84

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
             G    D+ V  +L+DMY    SV   R +F+ +  +N  V TWT ++  Y Q G   D
Sbjct: 85  --GHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRN--VVTWTSLLTGYIQAGVLLD 140

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
            ++LF +M  +   V PN FT S  L   A    +  G+ +HA  ++      + FV N 
Sbjct: 141 VMSLFFRMRAEG--VWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTV-FVCNS 197

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L++MY++ G ++ ARVVF  ++ R++VSW +LM G  ++G   +A   F   R       
Sbjct: 198 LMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLT 257

Query: 563 GVTFLVLLYACS---HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
             T+  ++  C+   H G+  Q      S   + G  +       ++D   +A +LD+A+
Sbjct: 258 ESTYSTVINLCANLKHLGLARQ----LHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKAL 313

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           ++   M      + W A+++GC  + ++ L     +R+ E
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE 353


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/650 (37%), Positives = 380/650 (58%), Gaps = 24/650 (3%)

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
           ++ YA  +F ++ +P   D  ++N ++  +         ++LF  M  +  VQ D  +  
Sbjct: 73  SMDYAVSIFRQIDEP---DSPAYNIMIRGFTLKQSPHEAILLFKEMHEN-SVQPDEFTFP 128

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
             L  C+ L   S G+Q   +           VK     N ++  Y+  G  E A  +F 
Sbjct: 129 CILKVCSRLQALSEGEQIHALIMKCGFGSHGFVK-----NTLIHMYANCGEVEVARRVFD 183

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M + NV+    TW+++ AGY + G+  E + +F +M    +  + VTLVS+L+ C  + 
Sbjct: 184 EMSERNVR----TWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLA 239

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            L LG+  + Y  ++ L  + +      +I +L+DMYAKC  VD AR +FD +    RDV
Sbjct: 240 DLELGEWINRYVEEKGLKGNPT------LITSLVDMYAKCGQVDTARRLFDQM--DRRDV 291

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             W+ MI  YSQ     +AL LF +M  Q   + PN  T+   L +CA L AL  G+ +H
Sbjct: 292 VAWSAMISGYSQASRCREALDLFHEM--QKANIDPNEITMVSILSSCAVLGALETGKWVH 349

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
            ++ + + ++ +  +   L+D Y++ G ++++  VF  +  +NV+SWT L+ G   +G G
Sbjct: 350 FFIKKKRMKLTVT-LGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQG 408

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            KA   F  M ++ + P+ VTF+ +L ACSH+G+VD+G   F SMS++FGI  R EHY C
Sbjct: 409 KKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGC 468

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +VD+LGRA  ++EA + I+ MP++P  +IW  LL  C++H NVE+GE +  +L+ LE   
Sbjct: 469 MVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTH 528

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
            G Y LLSNIYA+ GRW+D  ++R  MK  G+KK PGCS ++       FF  D  H QS
Sbjct: 529 SGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQS 588

Query: 725 QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
           ++IY  +  ++++IK+ GYVP T+ A  D ++++K   +  HSEKLA+A+G++ + PGT 
Sbjct: 589 EEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTT 648

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRITKNLR+C DCH+A   +S + N EI++RD  RFHHFKEGSC+C  YW
Sbjct: 649 IRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 170/571 (29%), Positives = 268/571 (46%), Gaps = 104/571 (18%)

Query: 8   FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
            PLL +KTP       T+I LF           +L+L QCK++  +  IH  +I   L  
Sbjct: 5   LPLLPAKTPTAK----TSISLFPENPK------TLILEQCKTIRDLNEIHAHLIKTRL-- 52

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW---------WNALIRRAVRLRLPDN 118
                L+   V+ N    A  LL        S+F          +N +IR     + P  
Sbjct: 53  -----LLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHE 107

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A  LF +M      PDE+TFP +LK C  L +   G  +HA+I   GF S+ FV N L+ 
Sbjct: 108 AILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIH 167

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA C  +  AR++FDEM +    ++ +WN++ A Y +SG+ E  + LF  M  ++ ++ 
Sbjct: 168 MYANCGEVEVARRVFDEMSER---NVRTWNSMFAGYTKSGNWEEVVKLFHEML-ELDIRF 223

Query: 239 DGVSLVNALSACA-----SLGTW------SRG---------------KQCGMMEEAKKVF 272
           D V+LV+ L+AC       LG W       +G                +CG ++ A+++F
Sbjct: 224 DEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLF 283

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           ++M  +DVV+W+AM++GYS+     +A  LF +M++ N+                     
Sbjct: 284 DQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANI--------------------- 322

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
                         +PN +T+VS+LS CA +GAL  GK  H +  K+ + +       + 
Sbjct: 323 --------------DPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKL------TVT 362

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           +  AL+D YAKC SV+ +  +F  +  KN  V +WTV+I   + NG    AL  F  M +
Sbjct: 363 LGTALMDFYAKCGSVESSIEVFGKMPVKN--VLSWTVLIQGLASNGQGKKALEYFYLMLE 420

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSG 511
           ++  V+PN  T    L AC+    +  GR +   + R+   E  I     C++D+  R+G
Sbjct: 421 KN--VEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYG-CMVDILGRAG 477

Query: 512 DIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            I+ A     N+  Q N V W +L+    +H
Sbjct: 478 LIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 270/735 (36%), Positives = 410/735 (55%), Gaps = 70/735 (9%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSG--FD----SNVFVCNALMAMYARCDTLSYARQLFD 194
           +L    +  SS+    VHA +  +G  FD    S +F  +AL +      TL YAR LFD
Sbjct: 28  ILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSF----STLDYARNLFD 83

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           ++ QP   ++ +WNT++ AYA S D     ++F  +    +   +  +    + A + L 
Sbjct: 84  QIPQP---NLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELK 140

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
               G     M  A K+   M   D+   N++V  Y   G    A  LFK +  ++V   
Sbjct: 141 ASRVGTAVHGM--AIKLSFGM---DLYILNSLVRFYGACGDLSMAERLFKGISCKDV--- 192

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V+W+++I+ +AQ     +AL++F +M+   + PN VT+V +LS CA    L  G+    
Sbjct: 193 -VSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCS 251

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------- 421
           Y  ++ + VD      L + NA++DMY KC SVD A+ +FD +  ++             
Sbjct: 252 YIERKGIKVD------LTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAK 305

Query: 422 ----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
                           +++A W V+I +Y QNG   +ALA+F ++ Q  K+ KP+  TL 
Sbjct: 306 MGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNEL-QLSKIAKPDEVTLV 364

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC-----LIDMYSRSGDIDTARVVF 520
             L ACA+L A+  G  IH Y+ R         V NC     L+DMY++ G ++ A  VF
Sbjct: 365 STLSACAQLGAIDLGGWIHVYIKREG------IVLNCHLISSLVDMYAKCGSLEKALEVF 418

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
            ++++R+V  W++++ G GMHG G  A   F +M++  + P+ VTF  +L ACSH+G+VD
Sbjct: 419 YSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVD 478

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G  +F  M   +G+    +HYAC+VD+LGRA  L+EA+ELI  M   P+  +W ALL  
Sbjct: 479 EGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGA 538

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           C +H NVELGELA+++LL+LE    G+  LLSNIYA  GRW+ V+ +R LM+ T +KK P
Sbjct: 539 CSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEP 598

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE-K 759
           GCS ++       F VGD THP S  IY  L  +  ++K++GY P  S  L  +++++ K
Sbjct: 599 GCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLK 658

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
              L  HSEKLA+A+G++T AP  PIR+ KNLRICGDCH+    +S + + +I+LRD  R
Sbjct: 659 EQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYR 718

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF++G C+C  YW
Sbjct: 719 FHHFRDGHCSCMDYW 733



 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 183/600 (30%), Positives = 299/600 (49%), Gaps = 81/600 (13%)

Query: 11  LKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP 70
           L++ + L  N LF N ++ S             + +C S  Q+  +H +++   L   P 
Sbjct: 11  LQNFSTLNNNLLFRNHQILST------------IDKCSSSKQLKEVHARMLRTGLFFDPF 58

Query: 71  S----HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM 126
           S       +A  S +    A +L  +I P P +++ WN LIR       P  +F +FL +
Sbjct: 59  SASKLFTASALSSFSTLDYARNLFDQI-PQP-NLYTWNTLIRAYASSSDPFQSFVIFLDL 116

Query: 127 MRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           + +    P+++TFPFV+KA  EL +SR G++VH +     F  ++++ N+L+  Y  C  
Sbjct: 117 LDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGD 176

Query: 186 LSYARQLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           LS A +LF      GI   D+VSWN++++A+AQ    E  L LF +M  +  V  + V++
Sbjct: 177 LSMAERLF-----KGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERE-NVMPNSVTM 230

Query: 244 VNALSACA-----SLGTW------SRG---------------KQCGMMEEAKKVFERMKV 277
           V  LSACA       G W       +G                +CG +++A+K+F+ M  
Sbjct: 231 VGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPE 290

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +DV SW  M+ GY+++G ++ A  +F  M  +     +  W+ +I+ Y Q G   EAL +
Sbjct: 291 RDVFSWTIMLDGYAKMGDYDAARLVFNAMPVK----EIAAWNVLISAYEQNGKPKEALAI 346

Query: 338 FRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           F ++Q   + +P+ VTLVS LS CA +GA+ LG   H Y IKR   V   H     +I++
Sbjct: 347 FNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVY-IKREGIVLNCH-----LISS 400

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMYAKC S++ A  +F ++  + RDV  W+ MI     +G    A+ LF +M  Q+  
Sbjct: 401 LVDMYAKCGSLEKALEVFYSV--EERDVYVWSAMIAGLGMHGRGKAAIDLFFEM--QEAK 456

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN-----CLIDMYSRSG 511
           VKPN+ T +  L AC+    +  GR     V  ++ E +   V       C++D+  R+G
Sbjct: 457 VKPNSVTFTNVLCACSHAGLVDEGR-----VFFHEMEPVYGVVPEMKHYACMVDILGRAG 511

Query: 512 DIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            ++ A  + + +      S W +L+    +H   +    A DQ+ K  L P     +VLL
Sbjct: 512 FLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLK--LEPRNHGAIVLL 569


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/696 (38%), Positives = 399/696 (57%), Gaps = 64/696 (9%)

Query: 145  CGEL----PSSRCGSSVHAVIC-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
            CG++    P  +    +H+ IC      SN  +   LM  YA C      R +FDE+ + 
Sbjct: 1030 CGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK 1089

Query: 200  GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA-SLGTWSR 258
               ++V +N ++ +Y  +      L++F  M G   +  D  +    L A + S   W  
Sbjct: 1090 ---NVVFFNVMIRSYVNNHLYSDALLVFKNMAGH-GIDPDHYTYPCVLKASSGSEDLW-- 1143

Query: 259  GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
                GM   A  V   + + +V   N +++ Y + G   +A  +  +M   +V    V+W
Sbjct: 1144 ---VGMQIHAAVVRVGLDL-NVFVGNGLISMYGKCGCLVEACRVLDZMPCRDV----VSW 1195

Query: 319  SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
            ++++AG A+ G   +AL+V ++M+  GL+P+  T+ SLL                     
Sbjct: 1196 NSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA------------------- 1236

Query: 379  RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                          V N  +D      +V   + MF  +A  N+ + +W VMI  Y  N 
Sbjct: 1237 --------------VTNTCLD------NVSFVKEMFMKLA--NKSLVSWNVMIAVYMNNS 1274

Query: 439  GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
               +A+ +F QM  +D  V P+A +++  L AC  L+AL  GR+IH YV+R + +  +  
Sbjct: 1275 MPAEAVDIFLQM--EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNL-L 1331

Query: 499  VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
            + N LIDMY++ G ++ AR VFD +K R+VVSWTS+++ YGM+G G  A   F +M+  G
Sbjct: 1332 LENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLG 1391

Query: 559  LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
            L PD + F+ +L ACSH+G++D+G  YF  M++E  I  R EH+ C+VDLLGRA ++DEA
Sbjct: 1392 LNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEA 1451

Query: 619  VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
               I+ MPMEP   +W ALL+ CR+++N+ +G LAA++L +L  E+ G Y LLSNIYA A
Sbjct: 1452 YGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKA 1511

Query: 679  GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
            GRW+DV  +RS+MK  G+KK PG S  +      TF  GD++HPQS++IYE L  LV ++
Sbjct: 1512 GRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKM 1571

Query: 739  KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
            K  GYVP+T  ALHDV++E+K   L  HSEKLA+A+ IL TAPG+PIRITKNLR+CGDCH
Sbjct: 1572 KEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCH 1631

Query: 799  SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             A   IS I+  EI +RD+NRFHHF  G C+C  YW
Sbjct: 1632 IAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 149/521 (28%), Positives = 244/521 (46%), Gaps = 68/521 (13%)

Query: 56   IHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR 112
            +H +I + +  H  PS    L+ AY     P     +   I     +V ++N +IR  V 
Sbjct: 1046 LHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK--NVVFFNVMIRSYVN 1103

Query: 113  LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
              L  +A  +F  M   G  PD YT+P VLKA         G  +HA +   G D NVFV
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 1163

Query: 173  CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
             N L++MY +C  L  A ++ DZM      D+VSWN++VA  A++G  +  L +   M  
Sbjct: 1164 GNGLISMYGKCGCLVEACRVLDZM---PCRDVVSWNSLVAGCARNGQFDDALEVCKEMEL 1220

Query: 233  DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
             + ++ D  ++ + L A  +            +   K++F ++  K +VSWN M      
Sbjct: 1221 -LGLKPDAGTMASLLPAVTNTCL-------DNVSFVKEMFMKLANKSLVSWNVM------ 1266

Query: 293  IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
                                         IA Y       EA+D+F QM+   ++P+ ++
Sbjct: 1267 -----------------------------IAVYMNNSMPAEAVDIFLQMEDHAVDPDAIS 1297

Query: 353  LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
            + S+L  C  + ALLLG+  H Y +++ L        +L++ NALIDMYAKC  ++ AR 
Sbjct: 1298 IASVLPACGDLSALLLGRRIHEYVVRKRLQ------PNLLLENALIDMYAKCGCLEYARE 1351

Query: 413  MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            +FD +  K RDV +WT MI +Y  NG   DA++LF +M  QD  + P++      L AC+
Sbjct: 1352 VFDQM--KFRDVVSWTSMISAYGMNGKGRDAVSLFSRM--QDLGLNPDSIAFVSVLSACS 1407

Query: 473  RLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVV 529
                L  GR  + + L  +   ++P + +  C++D+  R+G +D A      +  + N  
Sbjct: 1408 HAGLLDEGR--YYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNER 1465

Query: 530  SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
             W +L++   ++        A DQ+ +  L P+   + VLL
Sbjct: 1466 VWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLL 1504


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/556 (42%), Positives = 345/556 (62%), Gaps = 16/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V  N ++  Y++ GS E+A  +F+KM Q +     VTW+ +I+GY+Q     +AL  F
Sbjct: 94  DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF----VTWTTLISGYSQHDRPCDALLFF 149

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM   G  PN  TL S++   A+      G + H + +K           ++ V +AL+
Sbjct: 150 NQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK------CGFDSNVHVGSALL 203

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D+Y +   +D A+++FDA+  +N DV +W  +I  +++  G   AL LF  M +     +
Sbjct: 204 DLYTRYGLMDDAQLVFDALESRN-DV-SWNALIAGHARRSGTEKALELFQGMLRDG--FR 259

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F+ +    AC+    L  G+ +HAY++++  E L+ F  N L+DMY++SG I  AR 
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG-EKLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD L +R+VVSW SL+T Y  HG G +A W F++MR+ G+ P+ ++FL +L ACSHSG+
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D+G  Y++ M K+ GI   A HY  +VDLLGRA  L+ A+  IE MP+EPT  IW ALL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           N CR+H N ELG  AA  + EL+ +  G + +L NIYA+ GRW D AR+R  MK +GVKK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P CSWV+ +     F   D  HPQ ++I      ++ +IK +GYVP TS  +  VD +E
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEK+ALA+ +L T PG+ I I KN+R+CGDCH+AI   S ++  EII+RD+N
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G+C+CK YW
Sbjct: 618 RFHHFKDGNCSCKDYW 633



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 40/354 (11%)

Query: 38  KITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQR 92
           +  + LL++C   K L Q  ++H  I+     H  V  + L+  Y    +   A  + ++
Sbjct: 61  RFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEK 120

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           +    F    W  LI    +   P +A   F QM+R G+ P+E+T   V+KA        
Sbjct: 121 MPQRDFVT--WTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           CG  +H      GFDSNV V +AL+ +Y R   +  A+ +FD +      + VSWN ++A
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR---NDVSWNALIA 235

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------ 260
            +A+    E  L LF  M  D   +    S  +   AC+S G   +GK            
Sbjct: 236 GHARRSGTEKALELFQGMLRD-GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 294

Query: 261 --------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                         + G + +A+K+F+R+  +DVVSWN+++T Y++ G  ++A   F++M
Sbjct: 295 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEM 354

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
           R+  ++ N +++ +V+   +  G   E    +  M+  G+ P     VT+V LL
Sbjct: 355 RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLL 408


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/724 (37%), Positives = 411/724 (56%), Gaps = 40/724 (5%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A    L++ + G   + + F  +LK    +  +    ++HA +   G  ++ FV  AL+ 
Sbjct: 120 ALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALID 179

Query: 179 MYARCDTLSYARQLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
            Y+    +  AR +FD+     IC  D+VSW  +VA YA++   E  L LF +M    ++
Sbjct: 180 AYSVRGNVDVARHVFDD-----ICCKDMVSWTGMVACYAENCFYEESLQLFNQM----RI 230

Query: 237 QG---DGVSLVNALSACASLGTWSRGKQ---CGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
            G   +  ++  AL +C  L  ++ GK    C +    K  ++     D+    A++  Y
Sbjct: 231 MGYKPNNFTISGALKSCLGLEAFNVGKSVHGCAL----KGCYDH----DLFVGIALLELY 282

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           ++ G   DA  LF++M     K +++ WS +IA YAQ     EALD+F +M+   + PN 
Sbjct: 283 AKSGEIIDAQRLFEEMP----KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNN 338

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            T  S+L  CAS  +L LGK+ H   +K  L+       ++ V NA++D+YAKC  ++ +
Sbjct: 339 FTFASVLQACASSVSLDLGKQIHSCVLKFGLN------SNVFVSNAIMDVYAKCGEIENS 392

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
             +F+ + P   DV TW  +I  Y Q G    A+ LF  M + D  ++P   T S  L A
Sbjct: 393 MKLFEEL-PDRNDV-TWNTIIVGYVQLGDGERAMNLFTHMLEHD--MQPTEVTYSSVLRA 448

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
            A LAAL  G QIH+  ++  Y      VAN LIDMY++ G I+ AR+ FD + +R+ VS
Sbjct: 449 SASLAALEPGLQIHSLTIKTMYNK-DTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVS 507

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++ GY MHG+  +A   FD M+     P+ +TF+ +L ACS++G++ +G  +F+SMS
Sbjct: 508 WNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMS 567

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           K++ I    EHY C+V LLGR  R DEA++LI  +  +P+ ++W ALL  C IH  V+LG
Sbjct: 568 KDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLG 627

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
            + A  +LE+E   D ++ LLSN+YA AGRW +VA +R  M+   V+K PG SWV+ +  
Sbjct: 628 RVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGV 687

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F VGD +HP  + I  +L  L ++ +  GYVP  +  L DV D+EK   L+ HSE+L
Sbjct: 688 VHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERL 747

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           ALAYG++ T     IRI KNLRIC DCH+ +  IS ++  EI++RD NRFHHF+ G C+C
Sbjct: 748 ALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSC 807

Query: 831 KGYW 834
             YW
Sbjct: 808 GDYW 811



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 218/428 (50%), Gaps = 28/428 (6%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + + +LF QM   G+ P+ +T    LK+C  L +   G SVH       +D ++FV  AL
Sbjct: 219 EESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIAL 278

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + +YA+   +  A++LF+EM +    D++ W+ ++A YAQS  ++  L LF RM     V
Sbjct: 279 LELYAKSGEIIDAQRLFEEMPKT---DLIPWSLMIARYAQSDRSKEALDLFLRMR-QTSV 334

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
             +  +  + L ACAS  +   GKQ         V +     +V   NA++  Y++ G  
Sbjct: 335 VPNNFTFASVLQACASSVSLDLGKQI-----HSCVLKFGLNSNVFVSNAIMDVYAKCGEI 389

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           E++  LF+++   N     VTW+ +I GY Q G G  A+++F  M    ++P  VT  S+
Sbjct: 390 ENSMKLFEELPDRN----DVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSV 445

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           L   AS+ AL  G + H  TIK +      +  D +V N+LIDMYAKC  ++ AR+ FD 
Sbjct: 446 LRASASLAALEPGLQIHSLTIKTM------YNKDTVVANSLIDMYAKCGRINDARLTFDK 499

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +    RD  +W  MI  YS +G + +AL LF  M   D   KPN  T    L AC+  A 
Sbjct: 500 M--NKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTD--CKPNKLTFVGVLSACSN-AG 554

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTS 533
           L +  Q H   +   Y+ + P + +  C++ +  R G  D A +++ +   Q +V+ W +
Sbjct: 555 LLYKGQAHFESMSKDYD-IKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRA 613

Query: 534 LMTGYGMH 541
           L+    +H
Sbjct: 614 LLGACVIH 621



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 159/619 (25%), Positives = 276/619 (44%), Gaps = 95/619 (15%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H  I   G   ++F  N L+  Y + ++L  A +LFDEM Q    + +S+ T+   
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQT---NTISFVTLAQG 110

Query: 214 YAQSGDAEGGLMLFARMTGD--------------VKVQGDGVSLVNALSAC--------- 250
           Y++       L    R+  +              + V  D   L   L AC         
Sbjct: 111 YSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHAD 170

Query: 251 ASLGTWSRGKQC--GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           A +GT         G ++ A+ VF+ +  KD+VSW  MV  Y+    +E++  LF +MR 
Sbjct: 171 AFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR- 229

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                        I GY                     +PN  T+   L  C  + A  +
Sbjct: 230 -------------IMGY---------------------KPNNFTISGALKSCLGLEAFNV 255

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK  H   +K      G +  DL V  AL+++YAK   +  A+ +F+ + PK  D+  W+
Sbjct: 256 GKSVHGCALK------GCYDHDLFVGIALLELYAKSGEIIDAQRLFEEM-PKT-DLIPWS 307

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           +MI  Y+Q+  + +AL LF +M Q    V PN FT +  L ACA   +L  G+QIH+ VL
Sbjct: 308 LMIARYAQSDRSKEALDLFLRMRQTS--VVPNNFTFASVLQACASSVSLDLGKQIHSCVL 365

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +      + FV+N ++D+Y++ G+I+ +  +F+ L  RN V+W +++ GY   G G++A 
Sbjct: 366 KFGLNSNV-FVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAM 424

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY----FDSMSKEFGISARAEHYAC 604
             F  M +  + P  VT+  +L A +    ++ GL+       +M  +  + A +     
Sbjct: 425 NLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANS----- 479

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           ++D+  +  R+++A    + M  +   + W A++ G  +H  + +  L    +++    K
Sbjct: 480 LIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMHG-MSMEALNLFDMMQHTDCK 537

Query: 665 DGSYTLLSNIYA--NAG-RWKDVARIRSLMKHTGVK---KRPGCS-WVQGKEG---TATF 714
               T +  + A  NAG  +K  A   S+ K   +K   +   C  W+ G+ G    A  
Sbjct: 538 PNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMK 597

Query: 715 FVGDRTHPQSQKIYEILAG 733
            +G+  +  S  ++  L G
Sbjct: 598 LIGEIAYQPSVMVWRALLG 616



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 140/268 (52%), Gaps = 13/268 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ +I R  +      A  LFL+M +    P+ +TF  VL+AC    S   G  +H+ + 
Sbjct: 306 WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVL 365

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +SNVFV NA+M +YA+C  +  + +LF+E+  P   D V+WNTI+  Y Q GD E 
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEEL--PDRND-VTWNTIIVGYVQLGDGER 422

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + LF  M  +  +Q   V+  + L A ASL     G Q   +       + M  KD V 
Sbjct: 423 AMNLFTHML-EHDMQPTEVTYSSVLRASASLAALEPGLQIHSL-----TIKTMYNKDTVV 476

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N+++  Y++ G   DA   F KM     K + V+W+A+I GY+  G   EAL++F  MQ
Sbjct: 477 ANSLIDMYAKCGRINDARLTFDKMN----KRDEVSWNAMICGYSMHGMSMEALNLFDMMQ 532

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGK 370
               +PN +T V +LS C++ G L  G+
Sbjct: 533 HTDCKPNKLTFVGVLSACSNAGLLYKGQ 560


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/724 (36%), Positives = 407/724 (56%), Gaps = 55/724 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+    + S      +HA I  +   S   + + ++++Y+  + L  +  +F+ +  P 
Sbjct: 11  LLQNPSSVKSKSQAKQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPP 69

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
               ++W +I+  Y   G     L  F +M    K     V   + L +C  +     G+
Sbjct: 70  T--TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNV-FPSVLKSCTLMKDLRFGE 126

Query: 261 -------QCGM-------------------MEEA---KKVFERMKVKDVVSWNAMVTGYS 291
                  + GM                   +EE    KKVF+  K  DV S     + Y 
Sbjct: 127 SVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY- 185

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
            +GS    F +  K        ++V+W+ VI+G AQ G   +AL + R+M    L P+  
Sbjct: 186 -LGSLRKVFEMMPKR-------DIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSF 237

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA- 410
           TL S+L   A    LL GKE H Y I+        +  D+ + ++LIDMYAKC  VD + 
Sbjct: 238 TLSSVLPIFAEYVNLLKGKEIHGYAIR------NGYDADVFIGSSLIDMYAKCTRVDDSC 291

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           RV +  + P++ D  +W  +I    QNG  ++ L  F QM      +KPN  + S  + A
Sbjct: 292 RVFY--MLPQH-DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPA 346

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           CA L  L  G+Q+H Y++R++++  + F+A+ L+DMY++ G+I TAR +FD ++  ++VS
Sbjct: 347 CAHLTTLHLGKQLHGYIIRSRFDGNV-FIASALVDMYAKCGNIRTARWIFDKMELYDMVS 405

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WT+++ GY +HG    A   F +M  EG+ P+ V F+ +L ACSH+G+VD+  KYF+SM+
Sbjct: 406 WTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMT 465

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +++ I    EHYA + DLLGR  RL+EA E I  M +EPT  +W  LL  CR+H N+EL 
Sbjct: 466 QDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELA 525

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E  + +L  ++ +  G+Y LLSNIY+ AGRWKD  ++R  M+  G+KK+P CSW++ K  
Sbjct: 526 EKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNK 585

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F  GD++HP   +I E L  L+++++  GYV  T+  LHDV++E+K  LL  HSE+L
Sbjct: 586 VHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERL 645

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+ +GI++T  GT IR+TKNLR+C DCH+A  FIS I+  EI++RD++RFHHFK+G C+C
Sbjct: 646 AITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSC 705

Query: 831 KGYW 834
             +W
Sbjct: 706 GDFW 709



 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 223/454 (49%), Gaps = 52/454 (11%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHL---IAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           KS +Q   +H QI+  +L    PS L   ++ Y + N    +L +   + PSP +   W 
Sbjct: 19  KSKSQAKQLHAQILRTSLP--SPSLLSTILSIYSNLNLLHDSLLIFNSL-PSPPTTLAWK 75

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ++IR      L  ++   F+QM+  G +PD   FP VLK+C  +   R G SVH  I   
Sbjct: 76  SIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRL 135

Query: 165 GFDSNVFVCNALMAMYAR---CDTLSYARQLFDEMFQPGIC------------------- 202
           G   +++ CNALM MY++    + ++  +++FDE     +                    
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEM 195

Query: 203 ----DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               DIVSWNT+++  AQ+G  E  LM+   M G+  ++ D  +L + L   A      +
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREM-GNADLRPDSFTLSSVLPIFAEYVNLLK 254

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           GK     E            DV   ++++  Y++    +D+  +F  + Q     + ++W
Sbjct: 255 GK-----EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH----DGISW 305

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +++IAG  Q G   E L  F+QM    ++PN V+  S++  CA +  L LGK+ H Y I+
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                DG    ++ + +AL+DMYAKC ++  AR +FD +  +  D+ +WT MI  Y+ +G
Sbjct: 366 S--RFDG----NVFIASALVDMYAKCGNIRTARWIFDKM--ELYDMVSWTAMIMGYALHG 417

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            A DA++LF +M  + + VKPN       L AC+
Sbjct: 418 HAYDAISLFKRM--EVEGVKPNYVAFMAVLTACS 449



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 201/453 (44%), Gaps = 62/453 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +  + ++A  +  +M      PD +T   VL    E  +   G  +H    
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 263

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+D++VF+ ++L+ MYA+C  +  + ++F  + Q    D +SWN+I+A   Q+G  + 
Sbjct: 264 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH---DGISWNSIIAGCVQNGMFDE 320

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
           GL  F +M    K++ + VS  + + ACA L T   GKQ                     
Sbjct: 321 GLKFFQQML-IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALV 379

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                CG +  A+ +F++M++ D+VSW AM+ GY+  G   DA +LFK+M  E VK N V
Sbjct: 380 DMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYV 439

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
            + AV+   +  G   EA   F  M Q   + P +    ++      VG L   +E + +
Sbjct: 440 AFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL---EEAYEF 496

Query: 376 TIKRVLSVDGSHPDDLMV---INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                +   GS    L+    ++  I++  K     V++ +F  + P+N  +  + ++  
Sbjct: 497 ISDMHIEPTGSVWSTLLAACRVHKNIELAEK-----VSKKLF-TVDPQN--IGAYVLLSN 548

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ- 491
            YS  G   DA  L   M  +    KP          AC   + +    ++HA+V  ++ 
Sbjct: 549 IYSAAGRWKDARKLRIAMRDKGMKKKP----------AC---SWIEIKNKVHAFVAGDKS 595

Query: 492 --YEMLIPFVANCLIDMYSRSGDI-DTARVVFD 521
             Y   I      L++   R G + DT  V+ D
Sbjct: 596 HPYYDRINEALKVLLEQMEREGYVLDTTEVLHD 628


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/580 (42%), Positives = 359/580 (61%), Gaps = 21/580 (3%)

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTG-----YSRIGSFEDAFALFKKMRQENVKLN 314
           K CG + + KK+   + +K    W+  V       YSR G   DA  LF  M   +    
Sbjct: 5   KACGDLLDGKKI-HCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRG-- 61

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
             +W+A+I+GY Q G+  EALD+  +M+  G++ + +T+ S+L  CA VG +L GK  H 
Sbjct: 62  --SWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           Y IK  L  +      L V NALI+MYAK  S+  A+ +F  +    +DV +W  +I  Y
Sbjct: 120 YVIKHGLEFE------LFVSNALINMYAKFGSLGHAQKVFGLLI---KDVVSWNTLITGY 170

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +QNG A++A+ ++  M + ++++ PN  T    L A + + AL+ G +IH  V++N    
Sbjct: 171 AQNGLASEAIEVYLLMEEHEEII-PNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYS 229

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            + FV  CLIDMY + G +D A  +F  + ++N V W ++++ YG+HG G+KA   F +M
Sbjct: 230 DV-FVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREM 288

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           + E + PD +TF+ LL ACSHSG+V      F+ M +E+GI    +HY C+VDL GRA  
Sbjct: 289 KAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGE 348

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L+ A   I+ MP++P    W ALLN CRIH N+ELG+ A+ RL E++SE  G Y LLSNI
Sbjct: 349 LEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNI 408

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YAN G+W+ V  +RSL +  G++K PG S +        F+ G++THP+ ++IY  L  L
Sbjct: 409 YANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDL 468

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
             +IK +GYVP   F L DV+++EK  +L  HSE+LA+AYGI++T+P TPIRI KNLR+C
Sbjct: 469 TSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVC 528

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GDCH+   FIS+I   EII+RDS+RFHHFK G+C+C  YW
Sbjct: 529 GDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 206/411 (50%), Gaps = 39/411 (9%)

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
           P V+KACG+L     G  +H ++   GF+ +VFV  +L+ MY+R   +  AR+LFD+M  
Sbjct: 1   PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDM-- 55

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
           P   D  SWN +++ Y Q+G+A   L +   M  +  V+ D +++ + L  CA +G    
Sbjct: 56  PAR-DRGSWNAMISGYCQNGNAAEALDIADEMRLE-GVKMDAITVASVLPVCAQVGDILS 113

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           GK   +      V +     ++   NA++  Y++ GS   A  +F  + ++     VV+W
Sbjct: 114 GKLIHLY-----VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKD-----VVSW 163

Query: 319 SAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           + +I GYAQ G   EA++V+  M +   + PN  T VS+L   + VGAL  G   H   I
Sbjct: 164 NTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVI 223

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K  L        D+ V   LIDMY KC  +D A  +F  +  KN     W  MI  Y  +
Sbjct: 224 KNCLY------SDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNS--VPWNAMISCYGVH 275

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G    AL LF +M  + + VKP+  T    L AC+  + L    Q    ++  +Y  + P
Sbjct: 276 GDGEKALELFREM--KAERVKPDHITFVSLLSACSH-SGLVSDAQWCFNMMEEEYG-IKP 331

Query: 498 FVAN--CLIDMYSRSGDIDTARVVFDNLK----QRNVVSWTSLMTGYGMHG 542
            + +  C++D++ R+G+++ A   F+ +K    Q +  +W +L+    +HG
Sbjct: 332 SLKHYGCMVDLFGRAGELEMA---FNFIKKMPIQPDASAWGALLNACRIHG 379



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 166/352 (47%), Gaps = 19/352 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    +      A  +  +M   G   D  T   VL  C ++     G  +H  + 
Sbjct: 63  WNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVI 122

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +  +FV NAL+ MYA+  +L +A+++F  + +    D+VSWNT++  YAQ+G A  
Sbjct: 123 KHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIK----DVVSWNTLITGYAQNGLASE 178

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + ++  M    ++  +  + V+ L A + +G   +G     M    +V +     DV  
Sbjct: 179 AIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQG-----MRIHGQVIKNCLYSDVFV 233

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              ++  Y + G  +DA +LF ++ ++    N V W+A+I+ Y   G G +AL++FR+M+
Sbjct: 234 GTCLIDMYGKCGKLDDAISLFYQVPRK----NSVPWNAMISCYGVHGDGEKALELFREMK 289

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              ++P+ +T VSLLS C+  G  L+     C+ +       G  P  L     ++D++ 
Sbjct: 290 AERVKPDHITFVSLLSACSHSG--LVSDAQWCFNMME--EEYGIKP-SLKHYGCMVDLFG 344

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           +   +++A   F    P   D + W  ++ +   +G          ++F+ D
Sbjct: 345 RAGELEMA-FNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVD 395


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/761 (34%), Positives = 413/761 (54%), Gaps = 52/761 (6%)

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           ++ A ++     R      +L  +++R   +P+ + +  ++   G+L   +   +V   I
Sbjct: 7   YYTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHI 66

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                  N+F  N L++ Y++   L   +++FD M      D+VSWN++++ YA +G   
Sbjct: 67  PQP----NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNH---DVVSWNSLLSGYAGNGLIS 119

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
             + ++  M  D  V  + ++    L   ++ G    G+Q                    
Sbjct: 120 ESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPL 179

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                  G + +A ++FE +  K++V +N M+TG  R     +A  LF  M +++     
Sbjct: 180 VDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDS---- 235

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           ++W+ +I G  Q G   EA+D F++M   G   +  T  S+L+ C    AL  GK+ H Y
Sbjct: 236 ISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAY 295

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            I+        + D++ V +AL+DMY KC++V  A  +F  +  KN  V +WT M+  Y 
Sbjct: 296 IIRT------DYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKN--VISWTAMLVGYG 347

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG + +A+ +F  M  Q   + P+ FTL   + +CA LA+L  G Q H   L +    L
Sbjct: 348 QNGYSEEAVRIFCDM--QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASG---L 402

Query: 496 IPFV--ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           I FV  +N LI +Y + G ++ A  +F  +K R+ VSWT+L++GY   G  ++    F+ 
Sbjct: 403 ICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFET 462

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M   G+ PDGVTF+ +L ACS +G+V++G  YF+ M KE  I+   +HY C++DLL RA 
Sbjct: 463 MLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAG 522

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
           RL+EA   I  MP  P  I W  LL+ CR++ N+E+G+ AA  L +LE +   SY LLS+
Sbjct: 523 RLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSS 582

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IYA  G+W DVA++R  M+  GVKK PG SW++ K     F   DR+ P S +IY  L  
Sbjct: 583 IYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLES 642

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           L  ++   GYVP  SF LHDV+  EK  +L  HSEKLA+A+G+L    G  IR+ KNLR+
Sbjct: 643 LYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRV 702

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CGDCH+A  +IS I   EI++RD+ RFH FK+G C+C  +W
Sbjct: 703 CGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/670 (37%), Positives = 389/670 (58%), Gaps = 45/670 (6%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L YA  +F  + +P   + +SWNT++  +A S D    L L+  M   + +  +  +   
Sbjct: 28  LPYAISVFKSIQEP---NQLSWNTMIRGHALSSDPISALNLYVYMIS-LGLSPNSYTFPF 83

Query: 246 ALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERMKVKD 279
              +CA       GKQ                           G++E+A KVF+    +D
Sbjct: 84  LFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRD 143

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VVS+ AM+TGY+  G+ + A    +KM  E    +VV+W+A+I+GYA+ G   EAL++F 
Sbjct: 144 VVSYTAMITGYASRGNMDKA----QKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFN 199

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M    ++P+  T+ ++LS C   G + LG++ H +              +L ++NALID
Sbjct: 200 EMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFG------SNLKLVNALID 253

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +Y+KC  ++ A  +F+ +  + +DV +W  +IG Y+      +AL +F +M +  +   P
Sbjct: 254 LYSKCGEMERAHGLFEGL--QYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE--TP 309

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVANCLIDMYSRSGDIDTARV 518
           N  T+   L ACA L A+  GR IH Y+ +    ++    +   LIDMY++ G+I+ A  
Sbjct: 310 NDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQ 369

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD +  +++ S  +++ G+ MHG  D A     +M+K+G+ PD +TF+ LL ACSH+G+
Sbjct: 370 VFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGL 429

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            D G K F SM+ ++ I  + EHY C++DLLGR+    EA ELI  M MEP  +IW +LL
Sbjct: 430 SDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLL 489

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             C+IH N+ELGEL A +L+++E +  GSY LLSNIYA + RW DVAR+R+L+   G+KK
Sbjct: 490 KACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKK 549

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PGCS ++       F +GD+ HPQ+++IY++L  +   +   G+V  TS  L ++++E 
Sbjct: 550 VPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEEL 609

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K   L  HSEKLA+A+G+++T PGT +RI KNLR+C +CH A   IS I   EII RD +
Sbjct: 610 KEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRS 669

Query: 819 RFHHFKEGSC 828
           RFHHFK+G C
Sbjct: 670 RFHHFKDGMC 679



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 161/599 (26%), Positives = 263/599 (43%), Gaps = 134/599 (22%)

Query: 80  HNAPSPALSLLQRI-SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTF 138
           H  P  A+S+ + I  P+  S   WN +IR       P +A  L++ M+  G  P+ YTF
Sbjct: 26  HGLPY-AISVFKSIQEPNQLS---WNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTF 81

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC--------------- 183
           PF+ K+C +  +++ G  +HA I   G   ++ V  +L++MYA+                
Sbjct: 82  PFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSH 141

Query: 184 -DTLSY---------------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
            D +SY               A+++FDE+    I D+VSWN +++ YA+ G  +  L LF
Sbjct: 142 RDVVSYTAMITGYASRGNMDKAQKMFDEI---PIKDVVSWNAMISGYAEIGRYKEALELF 198

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------------- 261
             M   + V+ D  ++   LS C   G    G+Q                          
Sbjct: 199 NEMM-KMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSK 257

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           CG ME A  +FE ++ KDV+SWN ++ GY+ I   ++A  +F    QE +KL        
Sbjct: 258 CGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVF----QEMLKL-------- 305

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
                                  G  PN VT++S+L  CA +GA+ +G+  H Y  K++ 
Sbjct: 306 -----------------------GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK 342

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
            +      +  +  +LIDMYAKC +++ A  +FD I   N+ +++   MI  ++ +G A+
Sbjct: 343 GI----ITNTSLQTSLIDMYAKCGNIEAANQVFDTIL--NKSLSSCNAMIFGFAMHGRAD 396

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-HAYVLRNQYEMLIPFVA 500
            A  L  +M +    ++P+  T    L AC+       GR+I  +  L  + E  +    
Sbjct: 397 AAFDLLSRMKKDG--IEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYG 454

Query: 501 NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRK 556
            C+ID+  RSG    A  + +++  + + V W SL+    +H    LG+    A   M+ 
Sbjct: 455 -CMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELI--AQKLMKI 511

Query: 557 EGLAPDGVTFLVLLYACS---------HSGMVDQGLKY--------FDSMSKEFGISAR 598
           E   P     L  +YA S          + + D+GLK          DSM  EF I  +
Sbjct: 512 EPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDK 570


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 286/734 (38%), Positives = 414/734 (56%), Gaps = 33/734 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN ++    +  L + A  L+ +MM  G  PD YTFP VL++CG +P  R G  VHA
Sbjct: 160 VFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHA 219

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF   V V NALM MYA+C  +  AR++FD M    + D +SWN ++A + ++G+
Sbjct: 220 HVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSM---AVMDCISWNAMIAGHFENGE 276

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
              GL LF  M  D +VQ + +++ +   A   L   +  K     E      +R    D
Sbjct: 277 CNAGLELFLTMLQD-EVQPNLMTITSVTVASGLLSDITFAK-----EMHGLAVKRGFATD 330

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V   N+++  Y+ +G    A  +F +M   +     ++W+A+I+GY + G   +AL+V+ 
Sbjct: 331 VAFCNSLIQMYASLGMMGQARTVFSRMDTRDA----MSWTAMISGYEKNGFPDKALEVYA 386

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+   + P+ +T+ S L+ CA +G+L +G + H       L+        ++V NAL++
Sbjct: 387 LMEVNNVSPDDITIASALAACACLGSLDVGVKLH------ELAESKGFMSYVVVTNALLE 440

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAK K +D A  +F  +  K  DV +W+ MI  +  N    +AL  F  M      VKP
Sbjct: 441 MYAKSKRIDKAIEVFKCMPEK--DVVSWSSMIAGFCFNHRNFEALYYFRHMLAD---VKP 495

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTAR 517
           N+ T   AL ACA   ALR G++IHA+VLR    YE  +P   N LID+Y + G    A 
Sbjct: 496 NSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLP---NALIDLYVKCGQTGYAW 552

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             F     ++VVSW  ++ G+  HG G+ A   F+QM K G  PD VTF+ LL ACS  G
Sbjct: 553 AQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGG 612

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           MV +G + F SM+ ++ I    +HYAC+VDLL R  +L EA   I  MP+ P   +W AL
Sbjct: 613 MVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGAL 672

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           LNGCRIH +VELGELAA  +LELE    G + LL ++YA+AG W  +AR+R  M+  G+ 
Sbjct: 673 LNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLD 732

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
              GCSWV+ K     F   D +HPQ ++I  +L G+ +R+KA G  P  S   H  +D+
Sbjct: 733 HDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGCAPVES---HSPEDK 789

Query: 758 E-KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
             K D+   HSE+LA+A+G++ T PGT I +TKN   C  CH  +  IS I+  +II+RD
Sbjct: 790 VLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKMISYIVRRDIIVRD 849

Query: 817 SNRFHHFKEGSCTC 830
           S + HHFK+GSC+C
Sbjct: 850 SKQVHHFKDGSCSC 863



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 196/366 (53%), Gaps = 18/366 (4%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NAM++   R G    A+ +F KM + +V     +W+ ++ GY + G   EALD++ +M +
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDV----FSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+V T   +L  C  V    +G+E H + ++   +      +++ V+NAL+ MYAK
Sbjct: 189 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFA------EEVDVLNALMTMYAK 242

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V  AR +FD++A    D  +W  MI  + +NG  N  L LF  M Q +  V+PN  T
Sbjct: 243 CGDVVAARKVFDSMAVM--DCISWNAMIAGHFENGECNAGLELFLTMLQDE--VQPNLMT 298

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++   +A   L+ + F +++H   ++  +   + F  N LI MY+  G +  AR VF  +
Sbjct: 299 ITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAF-CNSLIQMYASLGMMGQARTVFSRM 357

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
             R+ +SWT++++GY  +G  DKA   +  M    ++PD +T    L AC+  G +D G+
Sbjct: 358 DTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGV 417

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CR 642
           K  + +++  G  +       ++++  ++ R+D+A+E+ + MP E   + W +++ G C 
Sbjct: 418 KLHE-LAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMP-EKDVVSWSSMIAGFCF 475

Query: 643 IHANVE 648
            H N E
Sbjct: 476 NHRNFE 481



 Score = 47.0 bits (110), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N ++ M  R G+   A  VF  + +R+V SW  ++ GYG  GL ++A   + +M   G
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 559 LAPDGVTFLVLLYAC 573
           + PD  TF  +L +C
Sbjct: 191 VRPDVYTFPCVLRSC 205


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/680 (38%), Positives = 392/680 (57%), Gaps = 23/680 (3%)

Query: 157 VHAVICSSGFDSNVFVC--NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +HA +  SG  +    C  + L A  A    L YA  LF    +P +     +N ++ A 
Sbjct: 35  LHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPL-STPCYNVLMRAL 93

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
             +G  E  L LF  M     V  D  ++  AL +C+ + T   G+  G+   A K   R
Sbjct: 94  LHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGR--GIQAYAVK---R 148

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
             + D    ++++  Y+       A  LF  + +EN    VV W+A+I  Y + G+  E 
Sbjct: 149 GLMADRFVLSSLIHMYASCRDVAAAQLLFDAV-EEN---GVVMWNAIITAYMKNGNWMEV 204

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           +++F+ M   G+  + +TLVS+++ C  +G   LGK    Y  ++ L  + +      ++
Sbjct: 205 VEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRN------LM 258

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            ALIDMYAKC  +  AR +FD +  ++RDV  W+ MI  Y+Q     +ALALF +M  Q 
Sbjct: 259 TALIDMYAKCGELGKARRLFDGM--QSRDVVAWSAMISGYTQADQCREALALFSEM--QL 314

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             V+PN  T+   L ACA L AL  G+ +H+Y+ R +  + I  +   L+D Y++ G ID
Sbjct: 315 AEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTI-ILGTALVDFYAKCGCID 373

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A   F+++  +N  +WT+L+ G   +G G +A   F  MRK  + P  VTF+ +L ACS
Sbjct: 374 DAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACS 433

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HS +V++G ++FDSM++++GI  RAEHY C+VDLLGRA  +DEA + I  MP+EP  +IW
Sbjct: 434 HSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIW 493

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ C +H NVE+GE A  +++ L     G Y LLSNIYA+ G+WK+ A IR  MK  
Sbjct: 494 RALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDR 553

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PGCS ++       FF  D  HPQ ++IY+ +  ++ RIK  GY+P T+    +V
Sbjct: 554 GIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEV 613

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           D+ EK   +  HSEKLA+A+G++   PG  IR++KNLR+C DCHSA   IS + N EI++
Sbjct: 614 DEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVV 673

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD NRFHHFK+G+C+C  YW
Sbjct: 674 RDRNRFHHFKDGTCSCNDYW 693



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/504 (28%), Positives = 236/504 (46%), Gaps = 87/504 (17%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-R 129
           S L AA  S      A+SL +     P S   +N L+R  +    P++A  LF++M+   
Sbjct: 54  SLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVA 113

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
              PD++T    LK+C  + +   G  + A     G  ++ FV ++L+ MYA C  ++ A
Sbjct: 114 SVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAA 173

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           + LFD + + G   +V WN I+ AY ++G+    + +F  M  +V V  D ++LV+ ++A
Sbjct: 174 QLLFDAVEENG---VVMWNAIITAYMKNGNWMEVVEMFKGML-EVGVAFDEITLVSVVTA 229

Query: 250 CASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSW 283
           C  +G    GK                          +CG + +A+++F+ M+ +DVV+W
Sbjct: 230 CGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAW 289

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           +AM++GY++     +A ALF +M+   V                                
Sbjct: 290 SAMISGYTQADQCREALALFSEMQLAEV-------------------------------- 317

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
              EPN VT+VS+LS CA +GAL  GK  H Y  ++ LS+       +++  AL+D YAK
Sbjct: 318 ---EPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSL------TIILGTALVDFYAK 368

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +D A   F+++  KN    TWT +I   + NG   +AL LF  M +    ++P   T
Sbjct: 369 CGCIDDAVEAFESMPVKNS--WTWTALIKGMATNGRGREALELFSSMRKAS--IEPTDVT 424

Query: 464 LSCALMACARLAALRFGRQ-----IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
               LMAC+    +  GR+        Y ++ + E        C++D+  R+G ID A  
Sbjct: 425 FIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHY-----GCVVDLLGRAGLIDEAYQ 479

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMH 541
               +  + N V W +L++   +H
Sbjct: 480 FIRTMPIEPNAVIWRALLSSCAVH 503



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 161/360 (44%), Gaps = 27/360 (7%)

Query: 10  LLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSL--------TQVYLIHQQII 61
           LL +  P    HLF  + L   +  P     +  L+ C  +         Q Y + + ++
Sbjct: 93  LLHAGHPEDALHLFVEM-LDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLM 151

Query: 62  VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR 121
                    S LI  Y S    + A  L   +  +   V  WNA+I   ++         
Sbjct: 152 ADRFVL---SSLIHMYASCRDVAAAQLLFDAVEEN--GVVMWNAIITAYMKNGNWMEVVE 206

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           +F  M+  G   DE T   V+ ACG +  ++ G  V   +   G   N  +  AL+ MYA
Sbjct: 207 MFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYA 266

Query: 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           +C  L  AR+LFD M      D+V+W+ +++ Y Q+      L LF+ M    +V+ + V
Sbjct: 267 KCGELGKARRLFDGMQSR---DVVAWSAMISGYTQADQCREALALFSEMQL-AEVEPNDV 322

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           ++V+ LSACA LG    GK        K++        ++   A+V  Y++ G  +DA  
Sbjct: 323 TMVSVLSACAVLGALETGKWVHSYIRRKRL-----SLTIILGTALVDFYAKCGCIDDAVE 377

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
            F+ M  +N      TW+A+I G A  G G EAL++F  M+   +EP  VT + +L  C+
Sbjct: 378 AFESMPVKN----SWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACS 433


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/741 (35%), Positives = 410/741 (55%), Gaps = 30/741 (4%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRC 153
           P P  +F +N LI+         ++   +  +++     PD +T+ F + A    P    
Sbjct: 67  PKP-DIFLFNVLIK-GFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISAS---PDDNL 121

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +HA     GFDSN+FV +AL+ +Y +   ++YAR++FD+M      D V WNT++  
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDR---DTVLWNTMITG 178

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
             ++   +  + +F  M     V+ D  ++   L A A +    +  + GM  +   +  
Sbjct: 179 LVRNCCYDDSVQVFKDMVAQ-GVRLDSTTVATVLPAVAEM----QEVKVGMGIQCLALKL 233

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                D V    +++ +S+    + A  LF  +R    K ++V+++A+I+G++  G    
Sbjct: 234 GFHFDDYV-LTGLISVFSKCEDVDTARLLFGMIR----KPDLVSYNALISGFSCNGETEC 288

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+  FR++   G   +  T+V L+   +  G L L      + +K    +  S      V
Sbjct: 289 AVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPS------V 342

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             AL  +Y++   +D+AR +FD  + K   VA W  MI  Y+Q+G    A++LF +M   
Sbjct: 343 STALTTIYSRLNEIDLARQLFDESSEKT--VAAWNAMISGYAQSGLTEMAISLFQEMMTT 400

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
           +    PN  T++  L ACA+L AL FG+ +H  +     E  I +V+  LIDMY++ G+I
Sbjct: 401 E--FTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNI-YVSTALIDMYAKCGNI 457

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             A  +FD   ++N V+W +++ GYG+HG GD+A   F++M   G  P  VTFL +LYAC
Sbjct: 458 SEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYAC 517

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH+G+V +G + F +M  ++ I   AEHYAC+VD+LGRA +L++A+E I  MP+EP P +
Sbjct: 518 SHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAV 577

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W  LL  C IH +  L  +A+ RL EL+    G Y LLSNIY+    +   A +R  +K 
Sbjct: 578 WGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKK 637

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             + K PGC+ ++       F  GDR+H Q+  IY  L  L  +++ MGY  +T  ALHD
Sbjct: 638 RNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHD 697

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           V++EEK  +   HSEKLA+A+G++TT PGT IRI KNLR+C DCH+A  FIS I    I+
Sbjct: 698 VEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIV 757

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD+NRFHHFK+G C+C  YW
Sbjct: 758 VRDANRFHHFKDGICSCGDYW 778


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 285/812 (35%), Positives = 430/812 (52%), Gaps = 37/812 (4%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNL--THVPP-----SHLIAAYVSHNAPSPAL 87
           P   +T   L QC + T   LIH ++   ++  T   P     ++L+  Y        A 
Sbjct: 16  PLDSVTYTKLVQCSTRTGS-LIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAK 74

Query: 88  SLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
            L  R+     +V  WN+LI    ++        LF +        D++TF   L  CG 
Sbjct: 75  KLFDRMPKR--NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGR 132

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
               R G  +HA+I  SG    V + N+L+ MY +C  + +AR +F+   +    D VSW
Sbjct: 133 TLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADE---LDSVSW 189

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           N+++A Y + G  +  L L  +M     +  +  +L +AL AC S   +S   +CG M  
Sbjct: 190 NSLIAGYVRIGSNDEMLRLLVKMLRH-GLNLNSYALGSALKACGS--NFSSSIECGKMLH 246

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              V   + + DVV   A++  Y++IG  EDA  +FK M   NV    V ++A+IAG+ Q
Sbjct: 247 GCAVKLGLDL-DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNV----VMYNAMIAGFLQ 301

Query: 328 -----RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                    +EA+ +F +MQ  G++P+  T  S+L  C+++ A   GK+ H    K  L 
Sbjct: 302 METMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ 361

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  D  + NAL+++Y+   S++     F +  PK  DV +WT +I  + QNG    
Sbjct: 362 ------SDEFIGNALVELYSLSGSIEDGLKCFHS-TPK-LDVVSWTSLIVGHVQNGQFEG 413

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
            L LF ++    +  KP+ FT+S  L ACA LAA++ G QIHAY ++         + N 
Sbjct: 414 GLTLFHELLFSGR--KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFT-IIQNS 470

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
            I MY++ GDID+A + F   K  ++VSW+ +++    HG   +A   F+ M+  G+AP+
Sbjct: 471 QICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPN 530

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TFL +L ACSH G+V++GL+YF+ M K+ GI+   +H ACIVDLLGRA RL EA   I
Sbjct: 531 HITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFI 590

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
                E  P++W +LL+ CR+H   + G+  A R++ELE E   SY LL NIY +AG   
Sbjct: 591 MDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQM 650

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
               IR+LMK  GVKK PG SW++      +F  GDR+HP SQ IY  L  +++ IK + 
Sbjct: 651 PATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLD 710

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y+ +   +       +   ++  HSEKLA+ +GI++     P+R+ KNLR C  CH  + 
Sbjct: 711 YIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMK 770

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             S + N EIILRD  RFH F++GSC+C  YW
Sbjct: 771 LFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/670 (38%), Positives = 388/670 (57%), Gaps = 43/670 (6%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + N    N L++ Y +   +S AR++FD+M +    ++VSW ++V  Y Q G  +   +L
Sbjct: 75  ERNTISWNGLVSGYVKNGMISEARKVFDKMPER---NVVSWTSMVRGYVQEGLIDEAELL 131

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F RM              N +S    LG      + G ++EA+++F+ + VKDVV+   M
Sbjct: 132 FWRMPEK-----------NVVSWTVMLGGLI---EDGRVDEARRLFDMIPVKDVVASTNM 177

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G    G   +A  +F +M Q NV    V W+++I+GYA     +  +DV R++     
Sbjct: 178 IGGLCSEGRLSEAREIFDEMPQRNV----VAWTSMISGYAM----NNKVDVARKLFEVMP 229

Query: 347 EPNVVTLVSLLSGCASVGALLLGKET-HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + N VT  ++L G    G +    E      +K V + +G           +I  +    
Sbjct: 230 DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNG-----------MIMGFGLNG 278

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V  AR +FD +  K +D  TW+ +I  Y + G   +ALALF  M  Q + V+PN  ++ 
Sbjct: 279 EVGKARWVFDQM--KEKDDGTWSALIKIYERKGFELEALALFSLM--QREGVRPNFPSII 334

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L  C  LA+L  GRQ+H+ ++R+ +++ I +V++ LI MY + GD+ T + VFD    
Sbjct: 335 SILSVCGSLASLDHGRQVHSQLVRSHFDLDI-YVSSVLITMYIKCGDLVTGKRVFDRFSS 393

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           +++V W S++ GY  HG G+KA   F +M   G APD +TF+ +L AC ++G V +GL+ 
Sbjct: 394 KDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEI 453

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F+SM  ++ +  + EHYAC+VDLLGRA +L+EA+ LIE MP+E   I+W ALL+ CR H 
Sbjct: 454 FESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHK 513

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N++L E+AA +LL+LE    G Y LLSN+YA+  RWKDVA +R  M+   V K PGCSW+
Sbjct: 514 NLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWI 573

Query: 706 QGKEGTATFF-VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           +       F   G  +HP+ + I + L  L   ++  GY P  SF +HDVD+E+K   L 
Sbjct: 574 EVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLR 633

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEK+A+AYG+L    G PIR+ KNLR+CGDCHSAI  I+ +   EIILRD+NRFHHFK
Sbjct: 634 HHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFK 693

Query: 825 EGSCTCKGYW 834
           +G C+C+ +W
Sbjct: 694 DGLCSCRDFW 703



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 220/546 (40%), Gaps = 134/546 (24%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA++      + P  A +LF +M  R                                 
Sbjct: 50  WNAIVAGYFHNKRPAEAQKLFDKMPER--------------------------------- 76

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                 N    N L++ Y +   +S AR++FD+M +    ++VSW ++V  Y Q G  + 
Sbjct: 77  ------NTISWNGLVSGYVKNGMISEARKVFDKMPER---NVVSWTSMVRGYVQEGLIDE 127

Query: 223 GLMLFARMTG--------------------------DVKVQGDGVSLVNALSACASLGTW 256
             +LF RM                            D+    D V+  N +    S G  
Sbjct: 128 AELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRL 187

Query: 257 SRGKQC----------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           S  ++                         ++ A+K+FE M  K+ V+W AM+ GY+R G
Sbjct: 188 SEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSG 247

Query: 295 SFEDAFALFKKMRQENV---------------------------KLNVVTWSAVIAGYAQ 327
              +A  LFK M  + V                           + +  TWSA+I  Y +
Sbjct: 248 RINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYER 307

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
           +G   EAL +F  MQ  G+ PN  +++S+LS C S+ +L  G++ H   ++       SH
Sbjct: 308 KGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVR-------SH 360

Query: 388 PD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            D D+ V + LI MY KC  +   + +FD  + K  D+  W  +I  Y+Q+G    AL +
Sbjct: 361 FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK--DIVMWNSIIAGYAQHGFGEKALEV 418

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-HAYVLRNQYEMLIPFVANCLID 505
           F +MF       P+  T    L AC     ++ G +I  +   + Q +      A C++D
Sbjct: 419 FHEMFSSG--AAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYA-CMVD 475

Query: 506 MYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           +  R+G ++ A  + +N+  + + + W +L++    H   D A  A  ++ +  L P   
Sbjct: 476 LLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQ--LEPSSA 533

Query: 565 TFLVLL 570
              +LL
Sbjct: 534 GPYILL 539



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 117/261 (44%), Gaps = 23/261 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ALI+   R      A  LF  M R G  P+  +   +L  CG L S   G  VH+ + 
Sbjct: 298 WSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLV 357

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S FD +++V + L+ MY +C  L   +++FD        DIV WN+I+A YAQ G  E 
Sbjct: 358 RSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK---DIVMWNSIIAGYAQHGFGEK 414

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M        D ++ +  LSAC            G ++E  ++FE MK K  V 
Sbjct: 415 ALEVFHEMFSS-GAAPDEITFIGVLSACG---------YTGKVKEGLEIFESMKSKYQVD 464

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  MV    R G   +A  L + M    V+ + + W A+++  A R H +  L  
Sbjct: 465 QKTEHYACMVDLLGRAGKLNEAMNLIENM---PVEADAIVWGALLS--ACRTHKNLDLAE 519

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +   LEP+      LLS
Sbjct: 520 IAAKKLLQLEPSSAGPYILLS 540



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 166/363 (45%), Gaps = 40/363 (11%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G ++ A+ +F+ ++ K V SWNA+V GY       +A  LF KM +     N ++W+ 
Sbjct: 28  RLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----NTISWNG 83

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI--K 378
           +++GY + G   EA  VF +M     E NVV+  S++ G    G L+   E   + +  K
Sbjct: 84  LVSGYVKNGMISEARKVFDKMP----ERNVVSWTSMVRGYVQEG-LIDEAELLFWRMPEK 138

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            V+S         +++  LI+       VD AR +FD I  K  DV   T MIG     G
Sbjct: 139 NVVSW-------TVMLGGLIE----DGRVDEARRLFDMIPVK--DVVASTNMIGGLCSEG 185

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
             ++A  +F +M Q+      N    +  +   A    +   R++   V+ ++ E+    
Sbjct: 186 RLSEAREIFDEMPQR------NVVAWTSMISGYAMNNKVDVARKLFE-VMPDKNEV---- 234

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
               ++  Y+RSG I+ A  +F  +  + V +   ++ G+G++G   KA W FDQM+++ 
Sbjct: 235 TWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEK- 293

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
              D  T+  L+      G   + L  F  M +E G+         I+ + G    LD  
Sbjct: 294 ---DDGTWSALIKIYERKGFELEALALFSLMQRE-GVRPNFPSIISILSVCGSLASLDHG 349

Query: 619 VEL 621
            ++
Sbjct: 350 RQV 352



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 23/180 (12%)

Query: 495 LIPF---------VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           LIP+         +  C I  ++R G ID AR +FD+L+ + V SW +++ GY  +    
Sbjct: 5   LIPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPA 64

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   FD+M +     + +++  L+     +GM+ +  K FD M +   +S     +  +
Sbjct: 65  EAQKLFDKMPER----NTISWNGLVSGYVKNGMISEARKVFDKMPERNVVS-----WTSM 115

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           V    +   +DEA  L   MP E   + W  +L G      V+     A RL ++   KD
Sbjct: 116 VRGYVQEGLIDEAELLFWRMP-EKNVVSWTVMLGGLIEDGRVD----EARRLFDMIPVKD 170



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 7/168 (4%)

Query: 49  SLTQVYLIHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNAL 106
           SL     +H Q++    +L     S LI  Y+          +  R S     +  WN++
Sbjct: 345 SLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK--DIVMWNSI 402

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS-G 165
           I    +    + A  +F +M   G  PDE TF  VL ACG     + G  +   + S   
Sbjct: 403 IAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQ 462

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            D        ++ +  R   L+ A  L + M  P   D + W  +++A
Sbjct: 463 VDQKTEHYACMVDLLGRAGKLNEAMNLIENM--PVEADAIVWGALLSA 508


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/724 (36%), Positives = 415/724 (57%), Gaps = 51/724 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA---MYARCDTLSYARQLFDEMF 197
           +L  C  L S R    +HA +   G  +  +  + L+    +    + L YA  +F  + 
Sbjct: 39  LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ 95

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P   +++ WNT+   +A S D    L L+  M   + +  +  +    L +CA    + 
Sbjct: 96  EP---NLLIWNTMFRGHALSSDPVSALKLYVCMIS-LGLLPNSYTFPFVLKSCAKSKAFK 151

Query: 258 RGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G +E+A KVF++   +DVVS+ A++ GY+
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
             G  E+A  LF ++  ++V    V+W+A+I+GYA+ G+  EAL++F+ M    + P+  
Sbjct: 212 SRGYIENAQKLFDEIPVKDV----VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDES 267

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           T+V+++S CA  G++ LG++ H +        D     +L ++NALID+Y+KC  ++ A 
Sbjct: 268 TMVTVVSACAQSGSIELGRQVHLWI------DDHGFGSNLKIVNALIDLYSKCGELETAC 321

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F+ +  K  DV +W  +IG Y+      +AL LF +M +  +   PN  T+   L AC
Sbjct: 322 GLFERLPYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--TPNDVTMLSILPAC 377

Query: 472 ARLAALRFGRQIHAYVLRNQYEML-IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           A L A+  GR IH Y+ +    +     +   LIDMY++ GDI+ A  VF+++  +++ S
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++ G+ MHG  D +   F +MRK G+ PD +TF+ LL ACSHSGM+D G   F +M+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +++ ++ + EHY C++DLLG +    EA E+I  M MEP  +IW +LL  C++H NVELG
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           E  A  L+++E E  GSY LLSNIYA+AGRW +VA+ R+L+   G+KK PGCS ++    
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F +GD+ HP++++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKL
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 677

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G+++T PGT + I KNLR+C +CH A   IS I   EII RD  RFHHF++G C+C
Sbjct: 678 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 737

Query: 831 KGYW 834
             YW
Sbjct: 738 NDYW 741



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 165/572 (28%), Positives = 283/572 (49%), Gaps = 69/572 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYV--SHNAPSP-ALSLLQRISPSP 97
           LL  CK+L  + +IH Q+I   L  T+   S LI   +   H    P A+S+ + I    
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEP- 97

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  WN + R       P +A +L++ M+  G  P+ YTFPFVLK+C +  + + G  +
Sbjct: 98  -NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 158 HAVICSSGFDSNVFVCNALMAMYARC----------------DTLSY------------- 188
           H  +   G D +++V  +L++MY +                 D +SY             
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216

Query: 189 --ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
             A++LFDE+    + D+VSWN +++ YA++G+ +  L LF  M     V+ D  ++V  
Sbjct: 217 ENAQKLFDEI---PVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVTV 272

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           +SACA  G+   G+Q  +  +       +K+      NA++  YS+ G  E A  LF+++
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIV-----NALIDLYSKCGELETACGLFERL 327

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             ++V    ++W+ +I GY       EAL +F++M   G  PN VT++S+L  CA +GA+
Sbjct: 328 PYKDV----ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            +G+  H Y  KR+  V  +      +  +LIDMYAKC  ++ A  +F++I  K+  +++
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASS----LRTSLIDMYAKCGDIEAAHQVFNSILHKS--LSS 437

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  MI  ++ +G A+ +  LF +M +    ++P+  T    L AC+    L  GR I   
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIG--IQPDDITFVGLLSACSHSGMLDLGRHIFR- 494

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG- 542
            +   Y+M  P + +  C+ID+   SG    A  + + ++   + V W SL+    MHG 
Sbjct: 495 TMTQDYKM-TPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGN 553

Query: 543 --LGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             LG+   +A + ++ E   P     L  +YA
Sbjct: 554 VELGES--FAENLIKIEPENPGSYVLLSNIYA 583


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/733 (35%), Positives = 404/733 (55%), Gaps = 25/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI   ++      AFRL+  M R G  PD  T   +L   GEL +      +H  + 
Sbjct: 108 WTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVI 167

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G++ N+ VCN+L+  Y +   L  A QLF  M      D V++N+++  Y+  G  E 
Sbjct: 168 KLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNK---DTVTFNSLMTGYSNEGLNEE 224

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + LF  +  +  ++    +    LSA   L     G+Q         V +   V +V  
Sbjct: 225 AIELFLEL-HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGF-----VLKTNFVWNVFV 278

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  YS+    ++   LF +M +    L+ ++++ VI  YA  G   E+ D+FR++Q
Sbjct: 279 GNALLDYYSKHDQVDEVGKLFXEMPE----LDGISYNVVITSYAWNGQFKESFDLFRKLQ 334

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           F   +       +LLS   S   L +G++ HC  I    + +        V NAL+DMYA
Sbjct: 335 FTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR------VENALVDMYA 388

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC     A+ +FD IA K+     WT MI +Y Q G   + + +F  M +    V  +  
Sbjct: 389 KCNGDKEAQKIFDNIACKS--TVPWTAMISAYVQKGKHEEGINVFSDMRRTG--VPADQA 444

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L ACA LA++  GRQ+H+ ++R+ + M   +  + L+D Y++ G +  A   F  
Sbjct: 445 TFASILRACANLASISLGRQLHSLLIRSGF-MSNVYSGSALLDTYAKCGCMTDAIKSFGE 503

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSW +L++ Y  +G  D    +F QM + G  PD V+FL +L ACSH G V++ 
Sbjct: 504 MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEA 563

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F+SM++ + ++ + EHY  +VD+L R  R DEA +L+  MP EP+ I+W ++LN CR
Sbjct: 564 LWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCR 623

Query: 643 IHANVELGELAANRLLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           IH N EL + AA+RL  +E  +D + Y  +SNIYA AG+W +VA+++  M+  GV+K P 
Sbjct: 624 IHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPA 683

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K  T  F   D++HP+ +KI   +  L + ++  GY P T+ ALHDVD+  K +
Sbjct: 684 YSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIE 743

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+ A+A+ ++ T  G+PI + KNLR C DCH+AI  IS I+  EII+RDS+RFH
Sbjct: 744 SLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFH 803

Query: 822 HFKEGSCTCKGYW 834
           HFK+G C+C  YW
Sbjct: 804 HFKDGVCSCGDYW 816



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 176/379 (46%), Gaps = 50/379 (13%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G + +A+++F+ M  +  VSW  ++ GY +    ++AF L+  MR               
Sbjct: 88  GKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR--------------- 132

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                RG               G+EP+ VTLV+LLSG   +    +  + H + IK    
Sbjct: 133 -----RG---------------GIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL--- 169

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
               +  +LMV N+L+D Y K   + +A  +F  +   N+D  T+  ++  YS  G   +
Sbjct: 170 ---GYEYNLMVCNSLVDAYCKTHCLYLASQLFKHML--NKDTVTFNSLMTGYSNEGLNEE 224

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ LF ++   +  +KP+ FT +  L A   L   +FG+Q+H +VL+  +   + FV N 
Sbjct: 225 AIELFLEL--HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNV-FVGNA 281

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+D YS+   +D    +F  + + + +S+  ++T Y  +G   ++   F +++       
Sbjct: 282 LLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 563 GVTFLVLLYACSHSGMVDQGLK-YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
              F  LL   + S  +  G + +  +++      +R E+   +VD+  + N   EA ++
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKI 399

Query: 622 IEGMPMEPTPIIWVALLNG 640
            + +  + T + W A+++ 
Sbjct: 400 FDNIACKST-VPWTAMISA 417



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           +N +I  + K   +  AR +FD +    R   +WT++IG Y Q+  + +A  L+  M + 
Sbjct: 77  LNMMISGHLKFGKLSKARELFDGMV--ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRG 134

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              ++P+  TL   L     L       QIH +V++  YE  +  V N L+D Y ++  +
Sbjct: 135 G--IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNL-MVCNSLVDAYCKTHCL 191

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             A  +F ++  ++ V++ SLMTGY   GL ++A   F ++   G+ P   TF  LL A
Sbjct: 192 YLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  G  +HA+ + +Q         N +I  + + G +  AR +FD + +R  VSWT L+ 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           GY       +A   +  MR+ G+ PD VT + LL
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/536 (44%), Positives = 338/536 (63%), Gaps = 19/536 (3%)

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
           +++  E  + NVV+W+A+I+GY+QRG+  EAL +F +M   G  PN  T  ++L+ C S 
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
               LG++ H   IK       S    + V ++L+DMYAK   +  AR +FD +    RD
Sbjct: 125 SGFQLGRQIHSLVIKT------SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP--ERD 176

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           V + T +I  Y+Q G   +AL LF ++  Q + ++ N  T +  L A + LAAL  GRQ+
Sbjct: 177 VVSCTAIISGYAQLGLDEEALDLFRRL--QREGMRSNYVTYASVLTALSGLAALDHGRQV 234

Query: 484 HAYVLRNQYEMLIPF---VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           H++VLR +    +PF   + N LIDMYS+ G +  +R +FD++ +R V+SW +++ GY  
Sbjct: 235 HSHVLRAK----LPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSK 290

Query: 541 HGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSM-SKEFGISAR 598
           HGLG +A   F  M++E  + PD VTFL +L  CSH GM D+GL+ F  M +++ G    
Sbjct: 291 HGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPE 350

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHY C+VDL GRA R++EA E I+ MP EPT  IW +LL  CR+H NV +GE  A RLL
Sbjct: 351 IEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLL 410

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           E+ESE  G+Y +LSN+YA+AGRW DV  +R LMK   V K PG SW++  +   TF   D
Sbjct: 411 EIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASD 470

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
           R+HP+ ++++  +  L  +IK  GYVP+ S  L+DVDDE+K  +L  HSEKLALA+G++ 
Sbjct: 471 RSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLIC 530

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           T  GTP+RI KNLRIC DCH+   F+S +   E+ LRD NRFHH   G+C+C  YW
Sbjct: 531 TPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 185/388 (47%), Gaps = 64/388 (16%)

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   GLE       S+L+ C S  A+  G+  H + IK        +   + +   LI +
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTC------YEPPVYLRTRLIVL 54

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y KC+ +  AR + D +  +N  V +WT MI  YSQ G A++AL LF +M        PN
Sbjct: 55  YNKCRCLGDARRVLDEMPERN--VVSWTAMISGYSQRGYASEALHLFVEMLMSG--TAPN 110

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            FT +  L +C   +  + GRQIH+ V++  +E  I FV + L+DMY+++G I  AR VF
Sbjct: 111 EFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHI-FVGSSLLDMYAKAGKICEARRVF 169

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D L +R+VVS T++++GY   GL ++A   F ++++EG+  + VT+  +L A S    +D
Sbjct: 170 DGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALD 229

Query: 581 QG-------------------------------LKY----FDSMSKEFGISARAEHYACI 605
            G                               L Y    FDSM +   IS  A      
Sbjct: 230 HGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYS 289

Query: 606 VDLLGRANRLDEAVELIEGMPME----PTPIIWVALLNGCRIHANVELGELAANRLLELE 661
              LGR     EAVEL + M  E    P  + ++A+L+GC  H  +E  +       E+ 
Sbjct: 290 KHGLGR-----EAVELFKLMKEENKVKPDSVTFLAVLSGCS-HGGME--DRGLEIFYEMV 341

Query: 662 SEKDG------SYTLLSNIYANAGRWKD 683
           ++KDG       Y  + +++  AGR ++
Sbjct: 342 NQKDGFEPEIEHYGCVVDLFGRAGRVEE 369



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 206/433 (47%), Gaps = 84/433 (19%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           VL  C    + R G  VHA +  + ++  V++   L+ +Y +C  L  AR++ DEM +  
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER- 74

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  +++ Y+Q G A   L LF  M        +  +    L++C S   +  G+
Sbjct: 75  --NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE-FTFATVLTSCTSSSGFQLGR 131

Query: 261 Q--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           Q                           G + EA++VF+ +  +DVVS  A+++GY+++G
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 191

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             E+A  LF+++++E ++ N VT+++V+                                
Sbjct: 192 LDEEALDLFRRLQREGMRSNYVTYASVLTA------------------------------ 221

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
             LSG A   AL  G++ H + ++  L      P  +++ N+LIDMY+KC S+  +R +F
Sbjct: 222 --LSGLA---ALDHGRQVHSHVLRAKL------PFYVVLQNSLIDMYSKCGSLTYSRRIF 270

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D++    R V +W  M+  YS++G   +A+ LF  M +++K VKP++ T    L  C+  
Sbjct: 271 DSMP--ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK-VKPDSVTFLAVLSGCSHG 327

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK----QRNV 528
                G +I  Y + NQ +   P + +  C++D++ R+G ++ A   F+ +K    +   
Sbjct: 328 GMEDRGLEIF-YEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA---FEFIKKMPFEPTA 383

Query: 529 VSWTSLMTGYGMH 541
             W SL+    +H
Sbjct: 384 AIWGSLLGACRVH 396



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 147/281 (52%), Gaps = 33/281 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I    +      A  LF++M+  G  P+E+TF  VL +C      + G  +H
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++  + F+S++FV ++L+ MYA+   +  AR++FD + +    D+VS   I++ YAQ G
Sbjct: 135 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER---DVVSCTAIISGYAQLG 191

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             E  L LF R+  +  ++ + V+  + L+A + L     G+Q                 
Sbjct: 192 LDEEALDLFRRLQRE-GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 250

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-V 311
                    CG +  ++++F+ M  + V+SWNAM+ GYS+ G   +A  LFK M++EN V
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 310

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQM--QFCGLEPNV 350
           K + VT+ AV++G +  G     L++F +M  Q  G EP +
Sbjct: 311 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 351


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/733 (35%), Positives = 404/733 (55%), Gaps = 25/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI   ++      AFRL+  M R G  PD  T   +L   GEL +      +H  + 
Sbjct: 108 WTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVI 167

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G++ N+ VCN+L+  Y +   L  A QLF  M      D V++N+++  Y+  G  E 
Sbjct: 168 KLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNK---DTVTFNSLMTGYSNEGLNEE 224

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + LF  +  +  ++    +    LSA   L     G+Q         V +   V +V  
Sbjct: 225 AIELFLEL-HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGF-----VLKTNFVWNVFV 278

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  YS+    ++   LF +M +    L+ ++++ VI  YA  G   E+ D+FR++Q
Sbjct: 279 GNALLDYYSKHDQVDEVGKLFYEMPE----LDGISYNVVITSYAWNGQFKESFDLFRKLQ 334

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           F   +       +LLS   S   L +G++ HC  I    + +        V NAL+DMYA
Sbjct: 335 FTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR------VENALVDMYA 388

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC     A+ +FD IA K+     WT MI +Y Q G   + + +F  M +    V  +  
Sbjct: 389 KCNGDKEAQKIFDNIACKS--TVPWTAMISAYVQKGKHEEGINVFSDMRRTG--VPADQA 444

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L ACA LA++  GRQ+H+ ++R+ + M   +  + L+D Y++ G +  A   F  
Sbjct: 445 TFASILRACANLASISLGRQLHSLLIRSGF-MSNVYSGSALLDTYAKCGCMTDAIKSFGE 503

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSW +L++ Y  +G  D    +F QM + G  PD V+FL +L ACSH G V++ 
Sbjct: 504 MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEA 563

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F+SM++ + ++ + EHY  +VD+L R  R DEA +L+  MP EP+ I+W ++LN CR
Sbjct: 564 LWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCR 623

Query: 643 IHANVELGELAANRLLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           IH N EL + AA+RL  +E  +D + Y  +SNIYA AG+W +VA+++  M+  GV+K P 
Sbjct: 624 IHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPA 683

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K  T  F   D++HP+ +KI   +  L + ++  GY P T+ ALHDVD+  K +
Sbjct: 684 YSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIE 743

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+ A+A+ ++ T  G+PI + KNLR C DCH+AI  IS I+  EII+RDS+RFH
Sbjct: 744 SLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFH 803

Query: 822 HFKEGSCTCKGYW 834
           HFK+G C+C  YW
Sbjct: 804 HFKDGVCSCGDYW 816



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 176/379 (46%), Gaps = 50/379 (13%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G + +A+++F+ M  +  VSW  ++ GY +    ++AF L+  MR               
Sbjct: 88  GKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR--------------- 132

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                RG               G+EP+ VTLV+LLSG   +    +  + H + IK    
Sbjct: 133 -----RG---------------GIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL--- 169

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
               +  +LMV N+L+D Y K   + +A  +F  +   N+D  T+  ++  YS  G   +
Sbjct: 170 ---GYEYNLMVCNSLVDAYCKTHCLYLASQLFKHML--NKDTVTFNSLMTGYSNEGLNEE 224

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ LF ++   +  +KP+ FT +  L A   L   +FG+Q+H +VL+  +   + FV N 
Sbjct: 225 AIELFLEL--HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNV-FVGNA 281

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+D YS+   +D    +F  + + + +S+  ++T Y  +G   ++   F +++       
Sbjct: 282 LLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 563 GVTFLVLLYACSHSGMVDQGLK-YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
              F  LL   + S  +  G + +  +++      +R E+   +VD+  + N   EA ++
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKI 399

Query: 622 IEGMPMEPTPIIWVALLNG 640
            + +  + T + W A+++ 
Sbjct: 400 FDNIACKST-VPWTAMISA 417



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           +N +I  + K   +  AR +FD +    R   +WT++IG Y Q+  + +A  L+  M + 
Sbjct: 77  LNMMISGHLKFGKLSKARELFDGMV--ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRG 134

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              ++P+  TL   L     L       QIH +V++  YE  +  V N L+D Y ++  +
Sbjct: 135 G--IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNL-MVCNSLVDAYCKTHCL 191

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             A  +F ++  ++ V++ SLMTGY   GL ++A   F ++   G+ P   TF  LL A
Sbjct: 192 YLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  G  +HA+ + +Q         N +I  + + G +  AR +FD + +R  VSWT L+ 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           GY       +A   +  MR+ G+ PD VT + LL
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/736 (36%), Positives = 406/736 (55%), Gaps = 31/736 (4%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN+++    +    + + R+F  M R     +  T   +L   G++   + G  +H ++ 
Sbjct: 330  WNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVV 389

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG---D 219
              GFDS V VCN L+ MYA       A  +F +M      D++SWN+++A++   G   D
Sbjct: 390  KMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTK---DLISWNSLMASFVNDGRSLD 446

Query: 220  AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            A G L    R    V      V+  +AL+AC S   + +G+    +     +F+   +  
Sbjct: 447  ALGILCSMIRTGKSVNY----VTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIG- 501

Query: 280  VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
                NA+V+ Y +IG    +  +  +M + +V    V W+A+I GYA+     +AL  F+
Sbjct: 502  ----NALVSMYGKIGGMSTSRRVLLQMPRRDV----VAWNALIGGYAENEDPDKALAAFQ 553

Query: 340  QMQFCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             ++  G+  N +T+VS+LS C   G LL  GK  H Y       V      D  V N+LI
Sbjct: 554  TLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYI------VSAGFESDEHVKNSLI 607

Query: 399  DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             MYAKC  +  ++ +F+ +   NR + TW  ++ + + +G   + L L  +M  +   + 
Sbjct: 608  TMYAKCGDLSSSQDLFNGL--DNRSIITWNAILAANAHHGHGEEVLKLVSKM--RSFGLS 663

Query: 459  PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
             + F+ S  L A A+LA L  G+Q+H   ++  +E L  F+ N   DMYS+ G+I     
Sbjct: 664  LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFE-LDCFIFNAAADMYSKCGEIGEVVK 722

Query: 519  VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            +      R++ SW  L++  G HG  ++    F +M + G+ P  VTF+ LL ACSH G+
Sbjct: 723  MLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGL 782

Query: 579  VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            VDQGL Y+D ++K+FG+    EH  C++DLLGR+ RL EA   I  MPM+P  ++W +LL
Sbjct: 783  VDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLL 842

Query: 639  NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              C+IH +++ G  AA  L +LE E D  + L SN++A  GRW+DV  +R  M    +KK
Sbjct: 843  ASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKK 902

Query: 699  RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            +  CSWV+ K+  ++F +GDRTHPQ+ +IY  L  + + IK  GYV  TS AL D D+E+
Sbjct: 903  KQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQ 962

Query: 759  KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
            K   L+ HSE+LALAY +++T  G+ +RI KNLRIC DCHS   F+S +I   I+LRD  
Sbjct: 963  KEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQY 1022

Query: 819  RFHHFKEGSCTCKGYW 834
            RFHHF+ G C+CK YW
Sbjct: 1023 RFHHFESGLCSCKDYW 1038



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 245/526 (46%), Gaps = 28/526 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +L+        P+    ++  M   G   +E +   V+ +CG L     G  + 
Sbjct: 225 NVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQII 284

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  SG +S + V N+L++M+     + YA  +F+++ +    D +SWN+IVAAYAQ+G
Sbjct: 285 GQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISER---DTISWNSIVAAYAQNG 341

Query: 219 DAEGGLMLFARMTG-DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
             E    +F  M     +V    VS + ++        W RG   G++   K  F+ +  
Sbjct: 342 HIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIH-GLV--VKMGFDSV-- 396

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             V   N ++  Y+  G  E+A  +FK+M  +    ++++W++++A +   G   +AL +
Sbjct: 397 --VCVCNTLLRMYAGAGRSEEADLVFKQMPTK----DLISWNSLMASFVNDGRSLDALGI 450

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
              M   G   N VT  S L+ C S      G+  H   +   L       D+ ++ NAL
Sbjct: 451 LCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLF------DNQIIGNAL 504

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           + MY K   +  +R +   +    RDV  W  +IG Y++N   + ALA F  +  +   V
Sbjct: 505 VSMYGKIGGMSTSRRVL--LQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEG--V 560

Query: 458 KPNAFTLSCALMACARLA-ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
             N  T+   L AC      L  G+ +HAY++   +E     V N LI MY++ GD+ ++
Sbjct: 561 SANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFES-DEHVKNSLITMYAKCGDLSSS 619

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           + +F+ L  R++++W +++     HG G++      +MR  GL+ D  +F   L A +  
Sbjct: 620 QDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKL 679

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            ++++G +    ++ + G       +    D+  +   + E V+++
Sbjct: 680 AVLEEG-QQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKML 724



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 133/550 (24%), Positives = 251/550 (45%), Gaps = 36/550 (6%)

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           W+P+   F        ++     G ++HA+        +V   N L+ MY +   +  AR
Sbjct: 56  WNPELSCFD--QTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPAR 113

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD+M    + + VSWNT+++   + G    G+  F +M  D+ ++     + + ++AC
Sbjct: 114 YLFDKM---PVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMC-DLGIKPSSFVIASLVTAC 169

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                   G+   M  E  +V   +     + DV    A++  Y   G    +  +F++M
Sbjct: 170 --------GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 221

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
              NV    V+W++++ GY+ +G   E +D+++ M+  G+E N  ++  ++S C  +   
Sbjct: 222 PDRNV----VSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDE 277

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LG++     IK  L         L V N+LI M+    +VD A  +F+ I+   RD  +
Sbjct: 278 SLGRQIIGQVIKSGL------ESKLAVENSLISMFGNMGNVDYANYIFNQIS--ERDTIS 329

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  ++ +Y+QNG   ++  +F  M +    V  N+ T+S  L     +   ++GR IH  
Sbjct: 330 WNSIVAAYAQNGHIEESSRIFNLMRRFHDEV--NSTTVSTLLSVLGDVDHQKWGRGIHGL 387

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           V++  ++ ++  V N L+ MY+ +G  + A +VF  +  ++++SW SLM  +   G    
Sbjct: 388 VVKMGFDSVVC-VCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLD 446

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A      M + G + + VTF   L AC      D+G +    +    G+         +V
Sbjct: 447 ALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALV 505

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
            + G+   +  +  ++  MP     + W AL+ G   + + +   LAA + L +E     
Sbjct: 506 SMYGKIGGMSTSRRVLLQMPRRDV-VAWNALIGGYAENEDPDKA-LAAFQTLRVEGVSAN 563

Query: 667 SYTLLSNIYA 676
             T++S + A
Sbjct: 564 YITVVSVLSA 573



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WNA++         +   +L  +M   G   D+++F   L A  +L     G  +H
Sbjct: 630 SIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLH 689

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQS 217
            +    GF+ + F+ NA   MY++C  +    +    M  P +   + SWN +++A  + 
Sbjct: 690 GLAVKLGFELDCFIFNAAADMYSKCGEIGEVVK----MLPPSVNRSLPSWNILISALGRH 745

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
           G  E     F  M  ++ ++   V+ V+ L+AC+  G   +G
Sbjct: 746 GYFEEVCETFHEML-EMGIKPGHVTFVSLLTACSHGGLVDQG 786


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/733 (36%), Positives = 415/733 (56%), Gaps = 25/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI    +L     AF LF+QM R G  PD  TF  +L  C         + V   I 
Sbjct: 117 WTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQII 176

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+DS + V N L+  Y + + L  A QLF EM  P I D VS+N ++  Y++ G  E 
Sbjct: 177 KLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM--PEI-DSVSYNAMITGYSKDGLDEK 233

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + LF  M  +  ++    +    L A   L     G+Q         V +   V +V  
Sbjct: 234 AVNLFVEMQ-NSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSF-----VIKTNFVWNVFV 287

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  YS+  S  DA  LF +M +++     V+++ +I+GYA  G    A D+FR++Q
Sbjct: 288 SNALLDFYSKHDSVIDARKLFDEMPEQDG----VSYNVIISGYAWDGKHKYAFDLFRELQ 343

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           F   +       ++LS  ++     +G++ H  TI  V + D     +++V N+L+DMYA
Sbjct: 344 FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI--VTTADS----EILVGNSLVDMYA 397

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC   + A ++F  +   +R    WT MI +Y Q G   + L LF +M Q    V  +  
Sbjct: 398 KCGKFEEAEMIFTNLT--HRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS--VIADQA 453

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L A A +A+L  G+Q+H++++++ + M   F  + L+D+Y++ G I  A   F  
Sbjct: 454 TFASLLRASASIASLSLGKQLHSFIIKSGF-MSNVFSGSALLDVYAKCGSIKDAVQTFQE 512

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  RN+VSW ++++ Y  +G  +    +F +M   GL PD V+FL +L ACSHSG+V++G
Sbjct: 513 MPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEG 572

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F+SM++ + +  R EHYA +VD+L R+ R +EA +L+  MP++P  I+W ++LN CR
Sbjct: 573 LWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACR 632

Query: 643 IHANVELGELAANRLLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           IH N EL   AA++L  +E  +D + Y  +SNIYA AG+W++V+++   M+  GVKK P 
Sbjct: 633 IHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPA 692

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K  T  F   DR HPQ ++I + +  L + ++ +GY P TS ALH+ D++ K +
Sbjct: 693 YSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVE 752

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+LA+A+ +++T  G+PI + KNLR C DCH+AI  IS I+  EI +RDS RFH
Sbjct: 753 SLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFH 812

Query: 822 HFKEGSCTCKGYW 834
           HF++G C+C  +W
Sbjct: 813 HFRDGFCSCGDFW 825



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 227/476 (47%), Gaps = 34/476 (7%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N    N +++ Y +   L  AR+LFD M +      V+W  ++  Y+Q    +    LF 
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTA---VTWTILIGGYSQLNQFKEAFELFV 138

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG--MMEEAKKVFERMKVKDVVSWNAM 286
           +M      + D V+ V  LS C        G + G  + +   ++ +      ++  N +
Sbjct: 139 QMQ-RCGTEPDYVTFVTLLSGC-------NGHEMGNQITQVQTQIIKLGYDSRLIVGNTL 190

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           V  Y +    + A  LFK+M +    ++ V+++A+I GY++ G   +A+++F +MQ  GL
Sbjct: 191 VDSYCKSNRLDLACQLFKEMPE----IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGL 246

Query: 347 EPNVVTLVSLLSGCASVG--ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           +P   T  ++L  CA++G   ++LG++ H + IK           ++ V NAL+D Y+K 
Sbjct: 247 KPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVW------NVFVSNALLDFYSKH 298

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            SV  AR +FD +  +  D  ++ V+I  Y+ +G    A  LF ++  Q        F  
Sbjct: 299 DSVIDARKLFDEMPEQ--DGVSYNVIISGYAWDGKHKYAFDLFREL--QFTAFDRKQFPF 354

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           +  L   +       GRQIHA  +    +  I  V N L+DMY++ G  + A ++F NL 
Sbjct: 355 ATMLSIASNTLDWEMGRQIHAQTIVTTADSEI-LVGNSLVDMYAKCGKFEEAEMIFTNLT 413

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            R+ V WT++++ Y   G  ++    F++MR+  +  D  TF  LL A +    +  G K
Sbjct: 414 HRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG-K 472

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              S   + G  +     + ++D+  +   + +AV+  + MP +   + W A+++ 
Sbjct: 473 QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 527



 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 18/294 (6%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G + +A+++FE+M  K+ VS N M++GY + G+  +A  LF  M    V+   VTW+ +I
Sbjct: 66  GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM----VERTAVTWTILI 121

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
            GY+Q     EA ++F QMQ CG EP+ VT V+LLSGC   G  +  + T   T    L 
Sbjct: 122 GGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCN--GHEMGNQITQVQTQIIKLG 179

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
            D      L+V N L+D Y K   +D+A  +F  +     D  ++  MI  YS++G    
Sbjct: 180 YDSR----LIVGNTLVDSYCKSNRLDLACQLFKEMPEI--DSVSYNAMITGYSKDGLDEK 233

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ LF +M  Q+  +KP  FT +  L A   L  +  G+QIH++V++  +   + FV+N 
Sbjct: 234 AVNLFVEM--QNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV-FVSNA 290

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           L+D YS+   +  AR +FD + +++ VS+  +++GY   G   K  +AFD  R+
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG---KHKYAFDLFRE 341



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 7/181 (3%)

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N +I  Y +SG++  AR +FD + +R  V+WT L+ GY       +A   F QM++ G  
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD VTF+ LL  C+   M +Q +    +   + G  +R      +VD   ++NRLD A +
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQ-ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQ 205

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSNIYANA 678
           L + MP E   + + A++ G   ++   L E A N  +E+++   K   +T  + + AN 
Sbjct: 206 LFKEMP-EIDSVSYNAMITG---YSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261

Query: 679 G 679
           G
Sbjct: 262 G 262


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/632 (39%), Positives = 367/632 (58%), Gaps = 36/632 (5%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+VS N  +A++ ++ D E    +F +M+    V  +  ++++  +  A           
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWN--TMLSGYTKVA----------- 118

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++EA ++F+++   D VS+N M+  Y R    E A A F KM  +++     +W+ +I
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDI----ASWNTLI 174

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G+AQ G   +A D+F  M     E N V+  +++SG    G L   +E +     + + 
Sbjct: 175 SGFAQNGQMQKAFDLFSVMP----EKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVV 230

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V+           A++  Y K   V++A  +F  +A KN  + TW  MI  Y +N  A D
Sbjct: 231 VE----------TAMLTGYMKFGKVELAERIFQRMAVKN--LVTWNSMIAGYVENCRAED 278

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
            L +F  M +    V+PN  +LS  L+ C+ L+AL  GRQ+H  V ++            
Sbjct: 279 GLKVFKTMIESR--VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT-ACTS 335

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LI MY + GD+D+A  +F  + +++V+SW ++++GY  HG G KA   FD+MR   + PD
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TF+ ++ AC+H+G VD G++YF SM KEFGI A+  HY C++DLLGRA RLDEAV LI
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLI 455

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + MP +P   I+  LL  CRIH N++L E AA  LL L+      Y  L+NIYA   +W 
Sbjct: 456 KEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWD 515

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
            VA++R +MK   V K PG SW++ K  T  F   DR HP+   I++ L  L  ++K  G
Sbjct: 516 QVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAG 575

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP   FALHDV++E K  LL  HSEKLA+A+G++ TAPGTPIR+ KNLR+CGDCH AI 
Sbjct: 576 YVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIK 635

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           FIS I   EII+RD+ RFHHF+ G C+C  YW
Sbjct: 636 FISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 10/234 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  Y+       A  + QR++    ++  WN++I   V     ++  ++F  M+     
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAVK--NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVR 292

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  +   VL  C  L +   G  +H ++  S    +   C +L++MY +C  L  A +L
Sbjct: 293 PNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKL 352

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F EM +    D++SWN +++ YAQ G     L LF +M     ++ D ++ V  + AC  
Sbjct: 353 FLEMPRK---DVISWNAMISGYAQHGAGRKALHLFDKMRNGT-MKPDWITFVAVILACNH 408

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
            G    G Q    +  KK F  ++ K  V +  ++    R G  ++A +L K+M
Sbjct: 409 AGFVDLGVQ--YFKSMKKEFG-IEAKP-VHYTCVIDLLGRAGRLDEAVSLIKEM 458


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/695 (38%), Positives = 397/695 (57%), Gaps = 62/695 (8%)

Query: 145 CGEL----PSSRCGSSVHAVIC-SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           CG++    P  +    +H+ IC      SN  +   LM  YA C      R +FDE+ + 
Sbjct: 41  CGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK 100

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              ++V +N ++ +Y  +      L++F  M G   +  D  +    L A +     S  
Sbjct: 101 ---NVVFFNVMIRSYVNNHLYSDALLVFKNMAGH-GIDPDHYTYPCVLKASSG----SED 152

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
              GM   A  V   + + +V   N +++ Y + G   +A  +  +M   +V    V+W+
Sbjct: 153 LWVGMQIHAAVVRVGLDL-NVFVGNGLISMYGKCGCLVEACRVLDQMPCRDV----VSWN 207

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +++AG A+ G   +AL+V ++M+  GL+P+  T+ SLL                      
Sbjct: 208 SLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA-------------------- 247

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
                        V N  +D      +V   + MF  +A  N+ + +W VMI  Y  N  
Sbjct: 248 -------------VTNTCLD------NVSFVKEMFMKLA--NKSLVSWNVMIAVYMNNSM 286

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +A+ +F QM  +D  V P+A +++  L AC  L+AL  GR+IH YV+R + +  +  +
Sbjct: 287 PAEAVDIFLQM--EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNL-LL 343

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N LIDMY++ G ++ AR VFD +K R+VVSWTS+++ YGM+G G  A   F +M+  GL
Sbjct: 344 ENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGL 403

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD + F+ +L ACSH+G++D+G  YF  M++E  I  R EH+ C+VDLLGRA ++DEA 
Sbjct: 404 NPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAY 463

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
             I+ MPMEP   +W ALL+ CR+++N+ +G LAA++L +L  E+ G Y LLSNIYA AG
Sbjct: 464 GFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAG 523

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           RW+DV  +RS+MK  G+KK PG S  +      TF  GD++HPQS++IYE L   V ++K
Sbjct: 524 RWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMK 583

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVP+T  ALHDV++E+K   L  HSEKLA+A+ IL TAPG+PIRITKNLR+CGDCH 
Sbjct: 584 EAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHI 643

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A   IS I+  EI +RD+NRFHHF  G C+C  YW
Sbjct: 644 AAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/521 (28%), Positives = 245/521 (47%), Gaps = 68/521 (13%)

Query: 56  IHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR 112
           +H +I + +  H  PS    L+ AY     P     +   I     +V ++N +IR  V 
Sbjct: 57  LHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK--NVVFFNVMIRSYVN 114

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
             L  +A  +F  M   G  PD YT+P VLKA         G  +HA +   G D NVFV
Sbjct: 115 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 174

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
            N L++MY +C  L  A ++ D+M      D+VSWN++VA  A++G  +  L +   M  
Sbjct: 175 GNGLISMYGKCGCLVEACRVLDQM---PCRDVVSWNSLVAGCARNGQFDDALEVCKEMEL 231

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
            + ++ D  ++ + L A  +    +       +   K++F ++  K +VSWN M      
Sbjct: 232 -LGLKPDAGTMASLLPAVTNTCLDN-------VSFVKEMFMKLANKSLVSWNVM------ 277

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
                                        IA Y       EA+D+F QM+   ++P+ ++
Sbjct: 278 -----------------------------IAVYMNNSMPAEAVDIFLQMEDHAVDPDAIS 308

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           + S+L  C  + ALLLG+  H Y +++ L        +L++ NALIDMYAKC  ++ AR 
Sbjct: 309 IASVLPACGDLSALLLGRRIHEYVVRKRLQ------PNLLLENALIDMYAKCGCLEYARE 362

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD +  K RDV +WT MI +Y  NG   DA++LF +M  QD  + P++      L AC+
Sbjct: 363 VFDQM--KFRDVVSWTSMISAYGMNGKGRDAVSLFSRM--QDLGLNPDSIAFVSVLSACS 418

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVV 529
               L  GR  + + L  +   ++P + +  C++D+  R+G +D A      +  + N  
Sbjct: 419 HAGLLDEGR--YYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNER 476

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            W +L++   ++        A DQ+ +  L P+   + VLL
Sbjct: 477 VWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLL 515


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 285/793 (35%), Positives = 439/793 (55%), Gaps = 34/793 (4%)

Query: 56  IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRI-SPSPFSVFWWNALIRRAVR 112
           IH QI  ++     V  + LI+ Y    +   A     R+   S   V  WNA+I   +R
Sbjct: 163 IHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLR 222

Query: 113 LRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGE--LPSSRCGSSVHAVICSSGFDSN 169
                 A +LF  M R G  P +  TF  VL +C E  L S     ++H  I  +G +  
Sbjct: 223 NGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIERE 282

Query: 170 VFVCNALMAMYARCDTLSYARQLF----DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            FV  AL+  Y +  +L  A ++F    DE  +P    +V+ + +++A  Q+G  +  L 
Sbjct: 283 AFVRTALVDSYGKLGSLDDAWEVFLRKGDE--EPST-SLVTCSAMISACWQNGWPQESLR 339

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           LF  M  +   +  GV+LV+ L+AC+ L   S      ++E+A +V      +D V    
Sbjct: 340 LFFAMNLE-GTKPSGVTLVSVLNACSMLQVGS--ATAFVLEQAMEVVS--ATRDNVLGTT 394

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++T Y+R      A A F  ++  +V    V+W+A+ A Y Q     EAL +F +M   G
Sbjct: 395 LLTTYARSNDLPRARATFDAIQSPDV----VSWNAMAAAYLQHHRSREALVLFERMLLEG 450

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV--DGSHPDDLMVINALIDMYAK 403
           + P+V T ++ L+ CA+        +T     KR+ S+  +     D  V NA ++MYAK
Sbjct: 451 VRPSVATFITALTACAA-----YPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAK 505

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C S+  AR +F+ I+P  RD  TW  M+ +Y  +G   +A  LF Q  + +KLVKPN  T
Sbjct: 506 CGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELF-QAMEAEKLVKPNKVT 564

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD-- 521
               L A     ++  GR+IHA V+ N +E     + N L++MY++ G +D A+ +FD  
Sbjct: 565 FVAVLDASTSRTSIAQGREIHARVVSNGFES-DTVIQNALLNMYAKCGSLDDAQAIFDKS 623

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +  Q +V++WTSL+ GY  +G  ++A   F  M+++G+ P+ VTF+  L AC+H G ++Q
Sbjct: 624 SSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQ 683

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G +    M+ + GI   ++H++CIVDLLGR  RLDEA +L+E    +   I W+ALL+ C
Sbjct: 684 GCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDAC 742

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           +    +E GE  A R+++L+ E   SY +L+++YA AGRW + A IR  M   G++  PG
Sbjct: 743 KNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPG 802

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CS V+  +   +F  GD++HP+S++IY  L  L   IKA GYV  T   LHDV  E K  
Sbjct: 803 CSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKER 862

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSEKLA+A+G+++T  G+P+R+ KNLR+C DCH+A   IS +   +I++RDS+R+H
Sbjct: 863 LLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYH 922

Query: 822 HFKEGSCTCKGYW 834
           HF  G+C+C  YW
Sbjct: 923 HFTSGTCSCGDYW 935



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 169/612 (27%), Positives = 302/612 (49%), Gaps = 35/612 (5%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFS 99
           LL+ C   ++L Q   +H  I+ + +     S L +  +  +A    L+  + ++    S
Sbjct: 49  LLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFAS 108

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V+   A+IR  +    PD A  LF +M  R   P+ +    ++ AC  L +   G  +H+
Sbjct: 109 VYSCTAMIRAWMEHGRPDKAMELFDRMEVR---PNCHALIALVNACSCLGNLAAGRRIHS 165

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            I    F+ N  + NAL++MY++C +L  A+Q FD + +    D+V+WN +++A+ ++G 
Sbjct: 166 QISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGS 225

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--- 276
           A   L LF  M  D     + V+ V+ L +C   G  S       +E+ + +  R+    
Sbjct: 226 AREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLS-------LEDVRAIHGRIVGAG 278

Query: 277 -VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             ++     A+V  Y ++GS +DA+ +F +   E    ++VT SA+I+   Q G   E+L
Sbjct: 279 IEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESL 338

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +F  M   G +P+ VTLVS+L+ C+    L +G  T  + +++ + V  +  D+++   
Sbjct: 339 RLFFAMNLEGTKPSGVTLVSVLNACS---MLQVGSAT-AFVLEQAMEVVSATRDNVLGTT 394

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            L+  YA+   +  AR  FDAI  ++ DV +W  M  +Y Q+  + +AL LF +M  +  
Sbjct: 395 -LLTTYARSNDLPRARATFDAI--QSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEG- 450

Query: 456 LVKPNAFTLSCALMACARL---AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
            V+P+  T   AL ACA      A   G++I + +     E     VAN  ++MY++ G 
Sbjct: 451 -VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTA-VANATLNMYAKCGS 508

Query: 513 IDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PDGVTFLVL 569
           +  AR VF+ +   +R+ ++W S++  YG HGLG +A   F  M  E L  P+ VTF+ +
Sbjct: 509 LADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAV 568

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L A +    + QG +    +    G  +       ++++  +   LD+A  + +      
Sbjct: 569 LDASTSRTSIAQGREIHARVVSN-GFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQ 627

Query: 630 TPII-WVALLNG 640
             +I W +L+ G
Sbjct: 628 EDVIAWTSLIAG 639



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 153/545 (28%), Positives = 256/545 (46%), Gaps = 40/545 (7%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD--SNVFVCNALMAMYARCDTLSYA 189
           H    T+  +L+ACG L + + G  +HA I S   D  ++ F+ + L+ M+A+C  L+ A
Sbjct: 40  HCAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEA 99

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
             L D         + S   ++ A+ + G  +  + LF RM    +V+ +  +L+  ++A
Sbjct: 100 EALADR-----FASVYSCTAMIRAWMEHGRPDKAMELFDRM----EVRPNCHALIALVNA 150

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           C+ LG  + G++        ++ +R   ++ V  NA+++ YS+ GS  DA   F ++ + 
Sbjct: 151 CSCLGNLAAGRRIH-----SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 205

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLL 368
           + K +VVTW+A+I+ + + G   EAL +FR M   G   PN VT VS+L  C   G  LL
Sbjct: 206 S-KRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAG--LL 262

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF--DAIAPKNRDVAT 426
             E       R+  V      +  V  AL+D Y K  S+D A  +F        +  + T
Sbjct: 263 SLEDVRAIHGRI--VGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVT 320

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
            + MI +  QNG   ++L LF  M  +    KP+  TL   L AC   + L+ G    A+
Sbjct: 321 CSAMISACWQNGWPQESLRLFFAMNLEG--TKPSGVTLVSVLNAC---SMLQVGSAT-AF 374

Query: 487 VLRNQYEMLIP----FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           VL    E++       +   L+  Y+RS D+  AR  FD ++  +VVSW ++   Y  H 
Sbjct: 375 VLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHH 434

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC-SHSGMVDQGL-KYFDSMSKEFGISARAE 600
              +A   F++M  EG+ P   TF+  L AC ++       + K   S+ +E G+     
Sbjct: 435 RSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTA 494

Query: 601 HYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
                +++  +   L +A  + E + P     I W ++L     H    LG+ A      
Sbjct: 495 VANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHG---LGKEAFELFQA 551

Query: 660 LESEK 664
           +E+EK
Sbjct: 552 MEAEK 556



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 156/371 (42%), Gaps = 80/371 (21%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C SL     + ++I       +  + ++AAY  H                         
Sbjct: 505 KCGSLADARAVFERISPARRDCITWNSMLAAYGHHG------------------------ 540

Query: 106 LIRRAVRLRLPDNAFRLFLQM-MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
                    L   AF LF  M   +   P++ TF  VL A     S   G  +HA + S+
Sbjct: 541 ---------LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSN 591

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           GF+S+  + NAL+ MYA+C +L  A+ +FD+       D+++W +++A YAQ G AE  L
Sbjct: 592 GFESDTVIQNALLNMYAKCGSLDDAQAIFDKS-SSNQEDVIAWTSLIAGYAQYGQAERAL 650

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG------------------------- 259
            LF  M     V+ + V+ ++AL+AC   G   +G                         
Sbjct: 651 KLFWTMQQQ-GVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVD 709

Query: 260 --KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG ++EA+K+ ER    DV++W A++         E      +++ Q + ++   +
Sbjct: 710 LLGRCGRLDEAEKLLERTSQADVITWMALLDACKNSKELERGERCAERIMQLDPEV-ASS 768

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           +  + + YA  G  +EA  + + M   G+  +         GC++V    + +E H ++ 
Sbjct: 769 YIVLASMYAAAGRWNEAATIRKTMLDKGIRAD--------PGCSAVE---VNQELHSFS- 816

Query: 378 KRVLSVDGSHP 388
               + D SHP
Sbjct: 817 ----AGDKSHP 823



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           Q  G  D  A   ++        P+  T  C L AC RL AL+ G+++HA++L  + ++ 
Sbjct: 20  QRLGVEDLTAAVSRIIADQGHCAPS--TYGCLLQACGRLRALKQGQRLHAHILSRRIDLH 77

Query: 496 I-PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
              F+A+ LI M+++ G++  A  + D     +V S T+++  +  HG  DKA   FD+M
Sbjct: 78  NHSFLASDLIVMHAKCGNLAEAEALADRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRM 135

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
               + P+    + L+ ACS  G +  G +    +S
Sbjct: 136 E---VRPNCHALIALVNACSCLGNLAAGRRIHSQIS 168


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/733 (35%), Positives = 399/733 (54%), Gaps = 25/733 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN  +   ++      A   F  M++     D  T+  +L     L     G  +H  + 
Sbjct: 265 WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVV 324

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D  V V N+ + MY +  +++YAR++F +M +    D++SWNT+++  A+SG  E 
Sbjct: 325 RFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKE---VDLISWNTVISGCARSGLEEC 381

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLG-TWSRGKQCGMMEEAKKVFERMKVKDVV 281
            L LF  +     +  D  ++ + L AC+SL  ++  G+Q         +     V D  
Sbjct: 382 SLRLFIDLLRS-GLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGI-----VLDSF 435

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
              A++  YS+ G  E+A  LF          ++ +W+A++ G+    +  EAL +F  M
Sbjct: 436 VSTALIDVYSKGGKMEEAELLFHNQD----GFDLASWNAMMHGFTVSDNYREALRLFSLM 491

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G + + +T  +       +  L  GK+ H   IK     D      L VI+ ++DMY
Sbjct: 492 HERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYD------LFVISGILDMY 545

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  +  AR +F+ I P   DVA WT +I    +NG    AL  + QM  +   V+P+ 
Sbjct: 546 LKCGEMKSARKVFNQI-PSPDDVA-WTTVISGCVENGEEEQALFTYHQM--RLAGVQPDE 601

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           +T +  + AC+ L AL  G+QIHA +++       PFV   L+DMY++ G+I+ A  +F 
Sbjct: 602 YTFATLVKACSLLTALEQGKQIHANIMKLNCA-FDPFVMTSLVDMYAKCGNIEDAYGLFR 660

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  R+V  W +++ G   HG  ++A   F++M+  G+ PD VTF+ +L ACSHSG+   
Sbjct: 661 RMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSD 720

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
             K FDSM K +G+    EHY+C+VD L RA  + EA +++  MP E +  ++  LLN C
Sbjct: 721 AYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNAC 780

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+  + E GE  A +L  ++     +Y LLSNIYA A +W++    R++MK   VKK PG
Sbjct: 781 RVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPG 840

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW+  K     F  GDR+H ++  IY  +  +++RIK  GYVP T FAL D+++E+K  
Sbjct: 841 FSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKES 900

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSEKLA+AYG++ T P T +R+ KNLR+CGDCH+AI +IS +   EI+LRD+NRFH
Sbjct: 901 ALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFH 960

Query: 822 HFKEGSCTCKGYW 834
           HF+ G C+C  YW
Sbjct: 961 HFRSGICSCGDYW 973



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 259/578 (44%), Gaps = 108/578 (18%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G   HAVI +SG + + +V N L+ MYA+C +L  AR+LFD   Q    D+V++N I+AA
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDR-DLVTYNAILAA 90

Query: 214 YAQSG---DAEG-------------GLMLFARMT---------------GDVKVQGDGVS 242
           YA +G   D E               +ML  R T                   +QG  V 
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 243 LV---NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
           +    +   A A +  +++ ++   + EA+ +F+RM V+DVV WN M+  Y  +G+ ++ 
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQR---IREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 300 FALF--------------------------------KKMRQENVKL-------NVVTWSA 320
             LF                                +++R    KL       +V  W+ 
Sbjct: 208 LGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNK 267

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
            ++ Y Q G G EA+D FR M    +  + +T + +LS  AS+  L LGK+ H   ++  
Sbjct: 268 TLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR-- 325

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                     + V N+ I+MY K  SV+ AR MF  +  K  D+ +W  +I   +++G  
Sbjct: 326 ----FGWDQFVSVANSAINMYVKAGSVNYARRMFGQM--KEVDLISWNTVISGCARSGLE 379

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFV 499
             +L LF  + +   L  P+ FT++  L AC+ L  +   GRQ+H   L+    +L  FV
Sbjct: 380 ECSLRLFIDLLRSGLL--PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGI-VLDSFV 436

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           +  LID+YS+ G ++ A ++F N    ++ SW ++M G+ +     +A   F  M + G 
Sbjct: 437 STALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGE 496

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE------FGISARAEHYACIVDLLGRAN 613
             D +TF     A      + QG +    + K       F IS        I+D+  +  
Sbjct: 497 KADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISG-------ILDMYLKCG 549

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
            +  A ++   +P  P  + W  +++GC     VE GE
Sbjct: 550 EMKSARKVFNQIP-SPDDVAWTTVISGC-----VENGE 581



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 143/592 (24%), Positives = 254/592 (42%), Gaps = 73/592 (12%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            AF +F  + +       +T   + K C    S     ++       G   +VFV  AL+
Sbjct: 105 EAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALV 164

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            +YA+   +  AR LFD M    + D+V WN ++ AY + G  +  L LF+       ++
Sbjct: 165 NIYAKFQRIREARVLFDRM---PVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRS-GLR 220

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D VS+   L        + R  +  +   A K+F      DV  WN  ++ Y + G   
Sbjct: 221 PDCVSVRTILMGVGKKTVFERELE-QVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGW 279

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH------GHEALDVFRQMQFCGL----- 346
           +A   F+ M +  V  + +T+  +++  A   H       H A+  F   QF  +     
Sbjct: 280 EAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAI 339

Query: 347 --------------------EPNVVTLVSLLSGCASVG-----------ALLLGKETHCY 375
                               E ++++  +++SGCA  G            L  G     +
Sbjct: 340 NMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQF 399

Query: 376 TIKRVLSVDGSHPD-------------------DLMVINALIDMYAKCKSVDVARVMFDA 416
           TI  VL    S  +                   D  V  ALID+Y+K   ++ A ++F  
Sbjct: 400 TITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFH- 458

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
                 D+A+W  M+  ++ +    +AL LF  M ++ +  K +  T + A  A   L  
Sbjct: 459 -NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGE--KADQITFANAAKAAGCLVR 515

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L+ G+QIHA V++ ++   + FV + ++DMY + G++ +AR VF+ +   + V+WT++++
Sbjct: 516 LQQGKQIHAVVIKMRFHYDL-FVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVIS 574

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
           G   +G  ++A + + QMR  G+ PD  TF  L+ ACS    ++QG +   ++ K    +
Sbjct: 575 GCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK-LNCA 633

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
                   +VD+  +   +++A  L   M       +W A++ G   H N E
Sbjct: 634 FDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVA-LWNAMIVGLAQHGNAE 684



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 17/249 (6%)

Query: 344 CGLEPNVV--TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           C + P+ +     S+L    +   L+LGK TH      V+   G +PD   V N LI MY
Sbjct: 5   CSVSPSSLLPQWFSILRHAIADSDLILGKRTHA-----VIVTSGLNPDRY-VTNNLITMY 58

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND------ALALFPQMFQQDK 455
           AKC S+  AR +FD     +RD+ T+  ++ +Y+  G  +D      A  +F  + Q   
Sbjct: 59  AKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVM 118

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           L   +  TLS     C    +      +  Y ++   +  + FVA  L+++Y++   I  
Sbjct: 119 LTTRH--TLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDV-FVAGALVNIYAKFQRIRE 175

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           ARV+FD +  R+VV W  +M  Y   G GD+    F    + GL PD V+   +L     
Sbjct: 176 ARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGK 235

Query: 576 SGMVDQGLK 584
             + ++ L+
Sbjct: 236 KTVFERELE 244



 Score = 42.0 bits (97), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 10/208 (4%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCKSLT---QVYLIHQQIIVQNLTHVP--PSHLIAA 76
           LFT  ++      P     + L++ C  LT   Q   IH  I+  N    P   + L+  
Sbjct: 586 LFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDM 645

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           Y        A  L +R++    SV  WNA+I    +    + A   F +M  RG  PD  
Sbjct: 646 YAKCGNIEDAYGLFRRMNTR--SVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRV 703

Query: 137 TFPFVLKACGELP-SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           TF  VL AC     +S    +  ++  + G +  +   + L+   +R   +  A ++   
Sbjct: 704 TFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSS 763

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           M  P       + T++ A    GD E G
Sbjct: 764 M--PFEASATMYRTLLNACRVQGDKETG 789


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 398/713 (55%), Gaps = 25/713 (3%)

Query: 123  FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
            F+ M+      D  TF  +L     L     G  +H ++  SG D  V V N L+ MY +
Sbjct: 894  FVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVK 953

Query: 183  CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
              ++S AR +F +M +    D+VSWNT+++  A SG  E  + +F  +     +  D  +
Sbjct: 954  TGSVSRARTVFWQMNE---VDLVSWNTMISGCALSGLEECSVGMFVDLLRG-GLLPDQFT 1009

Query: 243  LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFA 301
            + + L AC+SLG       C +  +      +  V  D      ++  YS+ G  E+A  
Sbjct: 1010 VASVLRACSSLG-----GGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEF 1064

Query: 302  LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
            LF  + Q+   L   +W+A++ GY   G   +AL ++  MQ  G   N +TL +      
Sbjct: 1065 LF--VNQDGFDL--ASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAG 1120

Query: 362  SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
             +  L  GK+     +KR  ++D      L VI+ ++DMY KC  ++ AR +F+ I P  
Sbjct: 1121 GLVGLKQGKQIQAVVVKRGFNLD------LFVISGVLDMYLKCGEMESARRIFNEI-PSP 1173

Query: 422  RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
             DVA WT MI    +NG    AL  +  M  +   V+P+ +T +  + AC+ L AL  GR
Sbjct: 1174 DDVA-WTTMISGCVENGQEEHALFTYHHM--RLSKVQPDEYTFATLVKACSLLTALEQGR 1230

Query: 482  QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            QIHA  ++       PFV   L+DMY++ G+I+ AR +F       + SW +++ G   H
Sbjct: 1231 QIHANTVKLNC-AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQH 1289

Query: 542  GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
            G  ++A   F++M+  G+ PD VTF+ +L ACSHSG+V +  + F SM K +GI    EH
Sbjct: 1290 GNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEH 1349

Query: 602  YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
            Y+C+VD L RA R+ EA ++I  MP E +  ++  LLN CR+  + E G+  A +LL LE
Sbjct: 1350 YSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALE 1409

Query: 662  SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
                 +Y LLSN+YA A +W++VA  R++M+   VKK PG SWV  K     F  GDR+H
Sbjct: 1410 PSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSH 1469

Query: 722  PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
             ++  IY  +  +++RI+  GY+P T FAL DV++E+K   L+ HSEKLA+AYG++ T P
Sbjct: 1470 EETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPP 1529

Query: 782  GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             T +R+ KNLR+CGDCH+AI +IS +   E++LRD+NRFHHF+ G C+C  YW
Sbjct: 1530 STTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 145/570 (25%), Positives = 247/570 (43%), Gaps = 94/570 (16%)

Query: 144  ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC- 202
            A  +LP    G   HA I +SG   + F+ N L+ MY++C +LS AR+LFD    P    
Sbjct: 638  AASDLP---LGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTT--PDTSR 692

Query: 203  DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-- 260
            D+V+WN I++A+A    A  G  LF R+     V     +L      C    + S  +  
Sbjct: 693  DLVTWNAILSAHADK--ARDGFHLF-RLLRRSFVSATRHTLAPVFKMCLLSASPSAAESL 749

Query: 261  ------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
                                    + G + EA+ +F+ M ++DVV WN M+  Y   G  
Sbjct: 750  HGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLE 809

Query: 297  EDAFALFKK-----MRQENVKL-------------------------------------- 313
             +A  LF +     +R ++V L                                      
Sbjct: 810  YEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGS 869

Query: 314  NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
            +V+ W+  ++ + QRG   EA+D F  M    +  + +T V +LS  A +  L LGK+ H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 374  CYTIKRVLSVDGSHPDDLMVI-NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
               ++  L       D ++ + N LI+MY K  SV  AR +F  +     D+ +W  MI 
Sbjct: 930  GIVVRSGL-------DQVVSVGNCLINMYVKTGSVSRARTVFWQM--NEVDLVSWNTMIS 980

Query: 433  SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQ 491
              + +G    ++ +F  + +   L  P+ FT++  L AC+ L        QIHA  ++  
Sbjct: 981  GCALSGLEECSVGMFVDLLRGGLL--PDQFTVASVLRACSSLGGGCHLATQIHACAMKAG 1038

Query: 492  YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
              +L  FV+  LID+YS+SG ++ A  +F N    ++ SW ++M GY + G   KA   +
Sbjct: 1039 V-VLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLY 1097

Query: 552  DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
              M++ G   + +T      A      + QG K   ++  + G +      + ++D+  +
Sbjct: 1098 ILMQESGERANQITLANAAKAAGGLVGLKQG-KQIQAVVVKRGFNLDLFVISGVLDMYLK 1156

Query: 612  ANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
               ++ A  +   +P  P  + W  +++GC
Sbjct: 1157 CGEMESARRIFNEIP-SPDDVAWTTMISGC 1185



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 11/215 (5%)

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L    +   L LGK  H     R+L+  G HPD  +  N LI MY+KC S+  AR +F
Sbjct: 631 SILRHAIAASDLPLGKRAHA----RILT-SGHHPDRFLT-NNLITMYSKCGSLSSARKLF 684

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D     +RD+ TW  ++ +++    A D   LF  +  +   V     TL+     C   
Sbjct: 685 DTTPDTSRDLVTWNAILSAHADK--ARDGFHLFRLL--RRSFVSATRHTLAPVFKMCLLS 740

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           A+      +H Y ++   +  + FVA  L+++Y++ G I  ARV+FD +  R+VV W  +
Sbjct: 741 ASPSAAESLHGYAVKIGLQWDV-FVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVM 799

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           M  Y   GL  +A   F +  + GL PD VT   L
Sbjct: 800 MKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/707 (38%), Positives = 400/707 (56%), Gaps = 29/707 (4%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+R    P+ YTFPF LKAC  L    CG ++H     +G  +++FV  AL+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV-KVQGDGVSLV 244
           L  A  +F  M  P   D+V+WN ++A YA  G     +     M   + +++ +  +LV
Sbjct: 61  LPDAAHIFATM--PAR-DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 117

Query: 245 NALSACASLGTWSRGKQ----CGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGSFEDA 299
             L   A  G  ++G      C           + K+ D V+   A++  Y++ GS   A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM---QFCGLEPNVVTLVSL 356
             +F  M   N     VTWSA+I G+       +A  +F+ M     C L P   ++ S 
Sbjct: 178 RRVFDAMPARNE----VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASA 231

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           L  CAS+  L +G++ H      +L+  G H D L   N+L+ MYAK   +D A  +FD 
Sbjct: 232 LRACASLDHLRMGEQLHA-----LLAKSGVHAD-LTAGNSLLSMYAKAGLIDQAIALFDE 285

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +A K  D  +++ ++  Y QNG A +A  +F +M  Q   V+P+A T+   + AC+ LAA
Sbjct: 286 MAVK--DTVSYSALVSGYVQNGRAEEAFLVFKKM--QACNVEPDAATMVSLIPACSHLAA 341

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L+ GR  H  V+          + N LIDMY++ G ID +R VF+ +  R++VSW +++ 
Sbjct: 342 LQHGRCSHGSVIIRGLASETS-ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 400

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
           GYG+HGLG +A   F +M   G  PDGVTF+ LL ACSHSG+V +G  +F  M   +G++
Sbjct: 401 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 460

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
            R EHY C+VDLL R   LDEA E I+ MP+     +WVALL  CR++ N++LG+  +  
Sbjct: 461 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 520

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           + EL  E  G++ LLSNIY+ AGR+ + A +R + K  G KK PGCSW++       F  
Sbjct: 521 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 580

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
           GD++HPQS +IY  L  ++  IK +GY P TSF L D+++EEK   L  HSEKLA+AYGI
Sbjct: 581 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 640

Query: 777 LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
           L+ +    I +TKNLR+CGDCH+ I  IS++    II+RD+NRFHHF
Sbjct: 641 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 20/285 (7%)

Query: 44  LRQCKSLTQVYLIHQ--QIIVQNLTH---VPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           LR C SL  + +  Q   ++ ++  H      + L++ Y        A++L   ++    
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-- 289

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
               ++AL+   V+    + AF +F +M      PD  T   ++ AC  L + + G   H
Sbjct: 290 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 349

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   G  S   +CNAL+ MYA+C  +  +RQ+F+ M      DIVSWNT++A Y   G
Sbjct: 350 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR---DIVSWNTMIAGYGIHG 406

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-CGMMEEAKKVFERMKV 277
             +    LF  M  ++    DGV+ +  LSAC+  G    GK    +M     +  RM+ 
Sbjct: 407 LGKEATALFLEMN-NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME- 464

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                +  MV   SR G  ++A+   + M    ++ +V  W A++
Sbjct: 465 ----HYICMVDLLSRGGFLDEAYEFIQSM---PLRADVRVWVALL 502


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/741 (36%), Positives = 404/741 (54%), Gaps = 27/741 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN+LI    ++        LF +        D++TF   L  CG     R G  +H
Sbjct: 5   NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 64

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A+I  SG    V + N+L+ MY +C  + +AR +F+   +    D VSWN+++A Y + G
Sbjct: 65  ALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADE---LDSVSWNSLIAGYVRIG 121

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             +  L L  +M     +  +  +L +AL AC S   +S   +CG M     V   + + 
Sbjct: 122 SNDEMLRLLVKMLRH-GLNLNSYALGSALKACGS--NFSSSIECGKMLHGCAVKLGLDL- 177

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-----RGHGHE 333
           DVV   A++  Y++IG  EDA  +FK M   NV    V ++A+IAG+ Q         +E
Sbjct: 178 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNV----VMYNAMIAGFLQMETMADEFANE 233

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+ +F +MQ  G++P+  T  S+L  C+++ A   GK+ H    K  L        D  +
Sbjct: 234 AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ------SDEFI 287

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NAL+++Y+   S++     F +  PK  DV +WT +I  + QNG     L LF ++   
Sbjct: 288 GNALVELYSLSGSIEDGLKCFHS-TPK-LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFS 345

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
            +  KP+ FT+S  L ACA LAA++ G QIHAY ++         + N  I MY++ GDI
Sbjct: 346 GR--KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNF-TIIQNSQICMYAKCGDI 402

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D+A + F   K  ++VSW+ +++    HG   +A   F+ M+  G+AP+ +TFL +L AC
Sbjct: 403 DSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVAC 462

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH G+V++GL+YF+ M K+ GI+   +H ACIVDLLGRA RL EA   I     E  P++
Sbjct: 463 SHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVM 522

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W +LL+ CR+H   + G+  A R++ELE E   SY LL NIY +AG       IR+LMK 
Sbjct: 523 WRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKD 582

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            GVKK PG SW++      +F  GDR+HP SQ IY  L  +++ IK + Y+ +   +   
Sbjct: 583 RGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDAS 642

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
               +   ++  HSEKLA+ +GI++     P+R+ KNLR C  CH  +   S + N EII
Sbjct: 643 EPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREII 702

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRD  RFH F++GSC+C  YW
Sbjct: 703 LRDPIRFHRFRDGSCSCGDYW 723



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 143/271 (52%), Gaps = 20/271 (7%)

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K NVV+W+++I+GY Q G  HE +++F++ +   L  +  T  + LS C     L LG+ 
Sbjct: 3   KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL 62

Query: 372 THCYTIKRVLSVDG-SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
            H      +++V G   P  +++ N+LIDMY KC  +D AR++F+  +    D  +W  +
Sbjct: 63  IHA-----LITVSGLGGP--VLLTNSLIDMYCKCGRIDWARLVFE--SADELDSVSWNSL 113

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR--LAALRFGRQIHAYVL 488
           I  Y + G  ++ L L  +M +    +  N++ L  AL AC     +++  G+ +H   +
Sbjct: 114 IAGYVRIGSNDEMLRLLVKMLRHG--LNLNSYALGSALKACGSNFSSSIECGKMLHGCAV 171

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY-GMHGLGD-- 545
           +   ++ +  V   L+D Y++ GD++ A  +F  +   NVV + +++ G+  M  + D  
Sbjct: 172 KLGLDLDV-VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEF 230

Query: 546 --KAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
             +A + F +M+  G+ P   TF  +L ACS
Sbjct: 231 ANEAMYLFFEMQSRGMKPSEFTFSSILKACS 261



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 168/417 (40%), Gaps = 56/417 (13%)

Query: 41  SLLLRQCKSLTQVYL---IHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISP 95
           S +L+ C ++        IH QI   NL       + L+  Y    +    L      S 
Sbjct: 254 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFH--ST 311

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
               V  W +LI   V+    +    LF +++  G  PDE+T   +L AC  L + + G 
Sbjct: 312 PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGE 371

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +HA    +G  +   + N+ + MYA+C  +  A   F E   P   DIVSW+ ++++ A
Sbjct: 372 QIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNP---DIVSWSVMISSNA 428

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           Q G A+  + LF  M G   +  + ++ +  L AC+           G++EE  + FE M
Sbjct: 429 QHGCAKEAVDLFELMKGS-GIAPNHITFLGVLVACS---------HGGLVEEGLRYFEIM 478

Query: 276 KVKDVVSWNA-----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           K    ++ N      +V    R G   +A +       E    + V W ++++       
Sbjct: 479 KKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG---DPVMWRSLLSACRV--- 532

Query: 331 GHEALDVFRQM--QFCGLEPNVVTLVSLLSGCAS-VGALLLGKETHCYTIKR-------- 379
            H+A D  +++  +   LEP       LL    +  G  +   E       R        
Sbjct: 533 -HKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGL 591

Query: 380 -----------VLSVDGSHPDDLMVINALIDMYAKCKSVDV--ARVMFDAIAPKNRD 423
                       ++ D SHP+  ++   L +M  + K +D    +++ DA  PK++D
Sbjct: 592 SWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKD 648



 Score = 40.4 bits (93), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RNVVSW SL++GY   G   +    F + R   L  D  TF   L  C  +  +  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-C 641
            +   ++    G+         ++D+  +  R+D A  + E    E   + W +L+ G  
Sbjct: 61  -RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVSWNSLIAGYV 118

Query: 642 RIHANVELGELAANRL 657
           RI +N E+  L    L
Sbjct: 119 RIGSNDEMLRLLVKML 134


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/710 (36%), Positives = 406/710 (57%), Gaps = 70/710 (9%)

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G   +E  F F+  +  + P ++C   +HA++  +G   ++F+   L+ +YA    +S +
Sbjct: 14  GNQNEEIDFNFLFDSSTKTPFAKC---LHALLVVAGKVQSIFISTRLVNLYANLGDVSLS 70

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R  FD++ Q    D+ +WN++++AY  +G     +  F ++    +++ D  +    L A
Sbjct: 71  RCTFDQIPQK---DVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKA 127

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG-----YSRIGSFEDAFALFK 304
           C            G + + +K+      K    WN  V       YSR G    A +LF 
Sbjct: 128 C------------GTLVDGRKI-HCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 174

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            M   ++     +W+A+I+G  Q G+  +ALDV  +M+  G++ N VT+VS+L       
Sbjct: 175 DMPFRDMG----SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP------ 224

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
                                            +DMYAK   +D A  +F+ I  K  DV
Sbjct: 225 -------------------------------VFVDMYAKLGLLDSAHKVFEIIPVK--DV 251

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +W  +I  Y+QNG A++A+ ++ +M ++ K + PN  T    L A A + AL+ G +IH
Sbjct: 252 ISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIH 310

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
             V++    + + FVA CLID+Y + G +  A  +F  + Q + V+W ++++ +G+HG  
Sbjct: 311 GRVIKTNLHLDV-FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHA 369

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           +K    F +M  EG+ PD VTF+ LL ACSHSG V++G K+   + +E+GI    +HY C
Sbjct: 370 EKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGC 428

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +VDLLGRA  L+ A + I+ MP++P   IW ALL  CRIH N+ELG+ A++RL E++S+ 
Sbjct: 429 MVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKN 488

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
            G Y LLSNIYAN G+W+ V ++RSL +  G+KK PG S ++       F+ G+++HP+ 
Sbjct: 489 VGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKC 548

Query: 725 QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
           ++IYE L  L  ++K++GY+P  SF L DV+++EK  +L  HSE+LA+A+GI++T P +P
Sbjct: 549 KEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSP 608

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRI KNLR+CGDCH+A  FIS I   EI++RDSNRFHHFK+G C+C  YW
Sbjct: 609 IRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 230/501 (45%), Gaps = 67/501 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V+ WN++I   V       A   F Q++      PD YTFP VLKACG L   R    +H
Sbjct: 82  VYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGR---KIH 138

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 GF  NVFV  +L+ MY+R      AR LFD+M      D+ SWN +++   Q+G
Sbjct: 139 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM---PFRDMGSWNAMISGLIQNG 195

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           +A   L +   M  +  ++ + V++V+ L     +       + G+++ A KVFE + VK
Sbjct: 196 NAAQALDVLDEMRLE-GIKMNFVTVVSILPVFVDMYA-----KLGLLDSAHKVFEIIPVK 249

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQ-ENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           DV+SWN ++TGY++ G   +A  ++K M + + +  N  TW +++  YA           
Sbjct: 250 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH---------- 299

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
                                    VGAL  G + H   IK  L +      D+ V   L
Sbjct: 300 -------------------------VGALQQGMKIHGRVIKTNLHL------DVFVATCL 328

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID+Y KC  +  A  +F  + P+   V TW  +I  +  +G A   L LF +M   D+ V
Sbjct: 329 IDVYGKCGRLVDAMSLFYQV-PQESSV-TWNAIISCHGIHGHAEKTLKLFGEML--DEGV 384

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDT 515
           KP+  T    L AC+    +  G+    + L  +Y  + P + +  C++D+  R+G ++ 
Sbjct: 385 KPDHVTFVSLLSACSHSGFVEEGKW--CFRLMQEYG-IKPSLKHYGCMVDLLGRAGYLEM 441

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           A     ++  Q +   W +L+    +HG  +   +A D++ +  +    V + VLL    
Sbjct: 442 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE--VDSKNVGYYVLLSNIY 499

Query: 575 HSGMVDQGLKYFDSMSKEFGI 595
            +    +G+    S+++E G+
Sbjct: 500 ANVGKWEGVDKVRSLARERGL 520


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 404/706 (57%), Gaps = 52/706 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALM---AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           +HA +  +G  +  +  + L+    +    D   YA  +FD + +P   +++ WNT+   
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEP---NLLIWNTMFRG 63

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------- 262
           +A S D    L L+  M   + +  D  +    L +CA       G+Q            
Sbjct: 64  HALSSDPVSALKLYLVMIS-LGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 263 ---------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                          G +E+A+KVF+    +DVVS+ A++ GY   G  E A  LF ++ 
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGAL 366
            ++V    V+W+A+I+GY + G+  EAL++F++M     + P+  T+V+++S CA   ++
Sbjct: 183 GKDV----VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSI 238

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LG+  H +        D     +L ++NALID+Y+K   V+ A  +FD +   N+DV +
Sbjct: 239 ELGRHVHSWI------NDHGFASNLKIVNALIDLYSKFGEVETACELFDGLW--NKDVIS 290

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  +IG Y+      +AL LF +M +  +   PN  T+   L ACA L A+  GR IH Y
Sbjct: 291 WNTLIGGYTHMNLYKEALLLFQEMLRSGE--TPNDVTMLSILPACAHLGAIDIGRWIHVY 348

Query: 487 VLRNQYEML--IPFVANCLIDMYSRSGDIDTARVVFDN-LKQRNVVSWTSLMTGYGMHGL 543
           + +    ++  +  +   LIDMY++ GDID A+ VFD+ +  R++ +W ++++G+ MHG 
Sbjct: 349 INKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGR 408

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
            + A   F +MR  G+ PD +TF+ LL ACSHSGM+D G   F SM++ + I+ + EHY 
Sbjct: 409 ANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYG 468

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C++DLLG +    EA E+I  MPMEP  +IW +LL  C+IH N+ELGE  A +L+++E  
Sbjct: 469 CMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPG 528

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR-PGCSWVQGKEGTATFFVGDRTHP 722
             GSY LLSNIYA AGRW +VA+IR+L+   G+KK+ PGCS ++       F +GD+ HP
Sbjct: 529 NSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHP 588

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           Q+++IY +L  +   ++  G+VP TS  L ++++E +   L  HSEKLA+A+G+++T PG
Sbjct: 589 QNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPG 648

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           T + I KNLR+C +CH A   IS I   EII RD  RF HF++G C
Sbjct: 649 TKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/474 (30%), Positives = 235/474 (49%), Gaps = 54/474 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN + R       P +A +L+L M+  G  PD YTFPF+LK+C +    + G  +H  + 
Sbjct: 57  WNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVL 116

Query: 163 SSGFDSNVFVCNALMAMYARC----------------DTLSY---------------ARQ 191
             GFD +++V  +L++MYA+                 D +SY               A++
Sbjct: 117 KLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQK 176

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LFDE+  PG  D+VSWN +++ Y ++G+ +  L LF  M     V+ D  ++V  +SACA
Sbjct: 177 LFDEI--PG-KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACA 233

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
              +   G+              +K+      NA++  YS+ G  E A  LF  +  +  
Sbjct: 234 QSDSIELGRHVHSWINDHGFASNLKIV-----NALIDLYSKFGEVETACELFDGLWNK-- 286

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             +V++W+ +I GY       EAL +F++M   G  PN VT++S+L  CA +GA+ +G+ 
Sbjct: 287 --DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 344

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y  K+   + G   +   +  +LIDMYAKC  +D A+ +FD+ +  NR ++TW  MI
Sbjct: 345 IHVYINKK---LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDS-SMSNRSLSTWNAMI 400

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             ++ +G AN A  +F +M      ++P+  T    L AC+    L  GR I   + R  
Sbjct: 401 SGFAMHGRANAAFDIFSRMRMNG--IEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRG- 457

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
           YE + P + +  C+ID+   SG    A  + + +  + + V W SL+    +HG
Sbjct: 458 YE-ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG 510



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 45/338 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN LI     + L   A  LF +M+R G  P++ T   +L AC  L +   G  +H 
Sbjct: 288 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 347

Query: 160 VICS--SGFDSNV-FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
            I     G  +NV  +  +L+ MYA+C  +  A+Q+FD         + +WN +++ +A 
Sbjct: 348 YINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNR--SLSTWNAMISGFAM 405

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G A     +F+RM  +  ++ D ++ V  LSAC+           GM++  + +F  M 
Sbjct: 406 HGRANAAFDIFSRMRMN-GIEPDDITFVGLLSACS---------HSGMLDLGRNIFRSMT 455

Query: 277 -----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                   +  +  M+      G F++A  +   M  E    + V W +++   A + HG
Sbjct: 456 RGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEP---DGVIWCSLLK--ACKIHG 510

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
           +  L      +   +EP       LLS   +      G+      I+ +L+  G      
Sbjct: 511 NLELGESFAKKLIKIEPGNSGSYVLLSNIYAAA----GRWNEVAKIRALLNDKG------ 560

Query: 392 MVINALIDMYAKCKSVDVARVMF-----DAIAPKNRDV 424
                +      C S+++  V+      D + P+NR++
Sbjct: 561 -----MKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREI 593


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/558 (42%), Positives = 346/558 (62%), Gaps = 20/558 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA++  Y+++G  +D+ ALF+      V  ++V+W+ +I+ ++Q     EAL  FR M  
Sbjct: 152 NALMAMYAKLGRVDDSKALFESF----VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 207

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+E + VT+ S+L  C+ +  L +GKE H Y ++    ++ S      V +AL+DMY  
Sbjct: 208 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS-----FVGSALVDMYCN 262

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C+ V+  R +FD I    R +  W  MI  Y++NG    AL LF +M +   L+ PN  T
Sbjct: 263 CRQVESGRRVFDHIL--GRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLL-PNTTT 319

Query: 464 LSCALMACAR-LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           ++  + AC   LAA+  G++IHAY +RN     I  V + L+DMY++ G ++ +R VF+ 
Sbjct: 320 MASVMPACVHSLAAIAKGKEIHAYAIRNMLASDIT-VGSALVDMYAKCGCLNLSRRVFNE 378

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-----LAPDGVTFLVLLYACSHSG 577
           +  +NV++W  L+   GMHG G++A   F  M  E        P+ VTF+ +  ACSHSG
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI-IWVA 636
           ++ +GL  F  M  + G+   ++HYAC+VDLLGRA +L+EA EL+  MP E   +  W +
Sbjct: 439 LISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSS 498

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CRIH NVELGE+AA  LL LE      Y LLSNIY++AG W     +R  M+  GV
Sbjct: 499 LLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGV 558

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PGCSW++ ++    F  GD +HPQS++++  L  L ++++  GYVP TS  LH+VD+
Sbjct: 559 KKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDE 618

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK +LL  HSEKLA+A+GIL T PGT IR+ KNLR+C DCH+A  FIS I+  EII+RD
Sbjct: 619 DEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRD 678

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHFKEG+C+C  YW
Sbjct: 679 VRRFHHFKEGTCSCGDYW 696



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/536 (26%), Positives = 231/536 (43%), Gaps = 111/536 (20%)

Query: 67  HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR----L 122
           H PPS       S   P+ A  L  +  P P S     A    A+R R   N FR     
Sbjct: 21  HSPPSLQTQPPPSIQKPT-ASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAIST 79

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN------------- 169
           +++M   G  PD + FP VLKA   L   + G  +HA     G+ S+             
Sbjct: 80  YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 170 --------VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                    F  NALMAMYA+   +  ++ LF+        D+VSWNT++++++QS    
Sbjct: 140 KCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDR---DMVSWNTMISSFSQSDRFS 196

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
             L  F  M  +  V+ DGV++ + L AC+ L     GK+                    
Sbjct: 197 EALAFFRLMVLE-GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSA 255

Query: 262 -------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                  C  +E  ++VF+ +  + +  WNAM++GY+R G  E A  LF +M        
Sbjct: 256 LVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM-------- 307

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA-SVGALLLGKETH 373
                                     ++  GL PN  T+ S++  C  S+ A+  GKE H
Sbjct: 308 --------------------------IKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIH 341

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y I+ +L+       D+ V +AL+DMYAKC  ++++R +F+ +   N++V TW V+I +
Sbjct: 342 AYAIRNMLA------SDITVGSALVDMYAKCGCLNLSRRVFNEMP--NKNVITWNVLIMA 393

Query: 434 YSQNGGANDALALFPQMFQQ---DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
              +G   +AL LF  M  +       KPN  T      AC+    +  G  +     R 
Sbjct: 394 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNL---FYRM 450

Query: 491 QYEMLIPFVAN---CLIDMYSRSGDIDTARVVFDNLKQR--NVVSWTSLMTGYGMH 541
           +++  +   ++   C++D+  R+G ++ A  + + +      V +W+SL+    +H
Sbjct: 451 KHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH 506



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 164/395 (41%), Gaps = 52/395 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA-VI 161
           WN +I    +      A   F  M+  G   D  T   VL AC  L     G  +HA V+
Sbjct: 182 WNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVL 241

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            ++    N FV +AL+ MY  C  +   R++FD +       I  WN +++ YA++G  E
Sbjct: 242 RNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR---RIELWNAMISGYARNGLDE 298

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACA-SLGTWSRGKQ------------------- 261
             L+LF  M     +  +  ++ + + AC  SL   ++GK+                   
Sbjct: 299 KALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSA 358

Query: 262 -------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM-----RQE 309
                  CG +  +++VF  M  K+V++WN ++      G  E+A  LFK M     R  
Sbjct: 359 LVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGG 418

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLL 368
             K N VT+  V A  +  G   E L++F +M+   G+EP       ++         LL
Sbjct: 419 EAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVD--------LL 470

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK---SVDVARVMFDAIAPKNRDVA 425
           G+      ++    +  + P +   + A   +   C+   +V++  V    +     +VA
Sbjct: 471 GRAGQ---LEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVA 527

Query: 426 TWTVMIGS-YSQNGGANDALALFPQMFQQDKLVKP 459
           +  V++ + YS  G  N A+ +   M Q     +P
Sbjct: 528 SHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 562



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           +R  A+W   + S +++    +A++ + +M       +P+ F     L A + L  L+ G
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSG--ARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI--------------------DTARVVF 520
            QIHA  ++  Y      VAN L++MY + G I                    D ++ +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           ++   R++VSW ++++ +       +A   F  M  EG+  DGVT   +L ACSH   +D
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 581 QG 582
            G
Sbjct: 232 VG 233


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/741 (35%), Positives = 417/741 (56%), Gaps = 29/741 (3%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRC 153
           P P  +F +N L+R       P ++  L+  + R     PD +T+ F + AC    + + 
Sbjct: 71  PKP-DIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS---NDKH 126

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
              +HA     G+ SNVFV +AL+ +Y +   + YAR++FD M +    D V WNT++  
Sbjct: 127 LMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPER---DTVLWNTMING 183

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
             ++   +  + LF  M  D  V+ D  ++   L A A L     G   G+   A K+  
Sbjct: 184 LVKNCCFDDSIQLFREMVAD-GVRVDSSTVTAVLPAAAELQELKVGM--GIQCLALKI-- 238

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                D V    +++ YS+ G    A  LF+++ + ++    + ++A+I+G+   G    
Sbjct: 239 GFGFCDYV-LTGLISLYSKCGDVNTARLLFRRINRPDL----IAYNAMISGFTANGGTEC 293

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           ++ +FR++ F G   +  T+V L+   +  G L L    H + +K  + ++ +      V
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT------V 347

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             A   +Y K   +D+AR +FD  +P+ + V  W  MI  Y+QNG    A++LF +M + 
Sbjct: 348 STAFTAIYNKLNEIDLARHLFDE-SPE-KTVVAWNAMISGYTQNGSTETAISLFKEMMKT 405

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
           +    PNA T++  L ACA+L +L FG+ +H  +     E  I +V+  L+DMY++ G+I
Sbjct: 406 E--FTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNI-YVSTALVDMYAKCGNI 462

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             A  +FD++ ++N V+W +++ GYG+HG G +A   +++M   G  P  VTFL +LYAC
Sbjct: 463 SEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYAC 522

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH+G+V +G + F +M  ++ I    EHYAC+VD+LGR+ +L++A+E I+ MP+EP P +
Sbjct: 523 SHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAV 582

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W  LL  C IH + ++  LA+ RL EL+    G Y LLSNIY+    +   A IR ++K 
Sbjct: 583 WGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKK 642

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             + K PGC+ ++       F  GDR+H  +  IY  L  L  +++ MGY  +T  ALHD
Sbjct: 643 RKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHD 702

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           V++EEK   +  HSEKLA+A+G++TT PG  IRI KNLR+C DCH+A  FIS I    I+
Sbjct: 703 VEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIV 762

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD+NRFHHFK+G C+C  YW
Sbjct: 763 VRDANRFHHFKDGICSCGDYW 783


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/736 (34%), Positives = 402/736 (54%), Gaps = 27/736 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           VF +N L+R       P ++  +F  + +     P+  T+ F + A       R G  +H
Sbjct: 83  VFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIH 142

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 G DS + + + ++ MY +   +  AR++FD M +    D + WNT+++ Y ++ 
Sbjct: 143 GQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK---DTILWNTMISGYRKNE 199

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                + +F  +  +   + D  +L++ L A A L     G Q   +      +    V 
Sbjct: 200 MYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV- 258

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                   ++ YS+ G  + A  LF++ R+ ++    V ++A+I GY   G    +L +F
Sbjct: 259 ----LTGFISLYSKCGKIKMASTLFREFRRPDI----VAYNAMIHGYTSNGETELSLSLF 310

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +++   G +    TLVSL+      G L+L    H Y++K       S      V  AL 
Sbjct: 311 KELMLSGAKLKSSTLVSLV---PVSGHLMLIYAIHGYSLKSNFLSHTS------VSTALT 361

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            +Y+K   ++ AR +FD    K+  + +W  MI  Y+QNG   DA++LF +M  Q+    
Sbjct: 362 TVYSKLNEIESARKLFDESPEKS--LPSWNAMISGYTQNGLTEDAISLFREM--QNSEFS 417

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  T++C L ACA+L AL  G+ +H  V    +E  I +V+  LI MY++ G I  AR 
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSI-YVSTALIGMYAKCGSIAEARR 476

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD + ++N V+W ++++GYG+HG G +A   F +M   G+AP  VTFL +LYACSH+G+
Sbjct: 477 LFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G + F+SM   +G     +HYAC+VD+LGRA  L  A++ IE MP++P P +W  LL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLL 596

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH +  L    + +L EL+ +  G + LLSNI++    +   A +R   K   + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG + ++  E    F  GD++HPQ + I+E L  L  +++  GY P+T  ALHDV++EE
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +  ++  HSE+LA+A+G++ T PGT IRI KNLR+C DCH+A   IS I    I++RD+N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDAN 776

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 777 RFHHFKDGVCSCGDYW 792


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/536 (44%), Positives = 338/536 (63%), Gaps = 19/536 (3%)

Query: 304  KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            +++  E  + NVV+W+A+I+GY+QRG+  EAL +F +M   G  PN  T  ++L+ C S 
Sbjct: 532  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 591

Query: 364  GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
                LG++ H   IK       S    + V ++L+DMYAK   +  AR +FD +    RD
Sbjct: 592  SGFQLGRQIHSLVIKT------SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP--ERD 643

Query: 424  VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
            V + T +I  Y+Q G   +AL LF ++  Q + ++ N  T +  L A + LAAL  GRQ+
Sbjct: 644  VVSCTAIISGYAQLGLDEEALDLFRRL--QREGMRSNYVTYASVLTALSGLAALDHGRQV 701

Query: 484  HAYVLRNQYEMLIPF---VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
            H++VLR +    +PF   + N LIDMYS+ G +  +R +FD++ +R V+SW +++ GY  
Sbjct: 702  HSHVLRAK----LPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSK 757

Query: 541  HGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSM-SKEFGISAR 598
            HGLG +A   F  M++E  + PD VTFL +L  CSH GM D+GL+ F  M +++ G    
Sbjct: 758  HGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPE 817

Query: 599  AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
             EHY C+VDL GRA R++EA E I+ MP EPT  IW +LL  CR+H NV +GE  A RLL
Sbjct: 818  IEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLL 877

Query: 659  ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
            E+ESE  G+Y +LSN+YA+AGRW DV  +R LMK   V K PG SW++  +   TF   D
Sbjct: 878  EIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASD 937

Query: 719  RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
            R+HP+ ++++  +  L  +IK  GYVP+ S  L+DVDDE+K  +L  HSEKLALA+G++ 
Sbjct: 938  RSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLIC 997

Query: 779  TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            T  GTP+RI KNLRIC DCH+   F+S +   E+ LRD NRFHH   G+C+C  YW
Sbjct: 998  TPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 213/451 (47%), Gaps = 84/451 (18%)

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
            L+M  +G   +   +  VL  C    + R G  VHA +  + ++  V++   L+ +Y +
Sbjct: 465 LLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNK 524

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           C  L  AR++ DEM +    ++VSW  +++ Y+Q G A   L LF  M        +  +
Sbjct: 525 CRCLGDARRVLDEMPER---NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE-FT 580

Query: 243 LVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMK 276
               L++C S   +  G+Q                           G + EA++VF+ + 
Sbjct: 581 FATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            +DVVS  A+++GY+++G  E+A  LF+++++E ++ N VT+++V+              
Sbjct: 641 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA------------ 688

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
                               LSG A   AL  G++ H + ++  L      P  +++ N+
Sbjct: 689 --------------------LSGLA---ALDHGRQVHSHVLRAKL------PFYVVLQNS 719

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LIDMY+KC S+  +R +FD++    R V +W  M+  YS++G   +A+ LF  M +++K 
Sbjct: 720 LIDMYSKCGSLTYSRRIFDSMP--ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK- 776

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDID 514
           VKP++ T    L  C+       G +I  Y + NQ +   P + +  C++D++ R+G ++
Sbjct: 777 VKPDSVTFLAVLSGCSHGGMEDRGLEIF-YEMVNQKDGFEPEIEHYGCVVDLFGRAGRVE 835

Query: 515 TARVVFDNLK----QRNVVSWTSLMTGYGMH 541
            A   F+ +K    +     W SL+    +H
Sbjct: 836 EA---FEFIKKMPFEPTAAIWGSLLGACRVH 863



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 147/281 (52%), Gaps = 33/281 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I    +      A  LF++M+  G  P+E+TF  VL +C      + G  +H
Sbjct: 542 NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 601

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++  + F+S++FV ++L+ MYA+   +  AR++FD + +    D+VS   I++ YAQ G
Sbjct: 602 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER---DVVSCTAIISGYAQLG 658

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             E  L LF R+  +  ++ + V+  + L+A + L     G+Q                 
Sbjct: 659 LDEEALDLFRRLQRE-GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 717

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-V 311
                    CG +  ++++F+ M  + V+SWNAM+ GYS+ G   +A  LFK M++EN V
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 777

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQM--QFCGLEPNV 350
           K + VT+ AV++G +  G     L++F +M  Q  G EP +
Sbjct: 778 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 818



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 103/196 (52%), Gaps = 6/196 (3%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L  C    A+R G+++HA++++  YE  + ++   LI +Y++   +  AR V D + +RN
Sbjct: 484 LTECISQTAIREGQRVHAHMIKTCYEPPV-YLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VVSWT++++GY   G   +A   F +M   G AP+  TF  +L +C+ S     G +   
Sbjct: 543 VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG-RQIH 601

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           S+  +    +     + ++D+  +A ++ EA  + +G+P E   +   A+++G   +A +
Sbjct: 602 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP-ERDVVSCTAIISG---YAQL 657

Query: 648 ELGELAANRLLELESE 663
            L E A +    L+ E
Sbjct: 658 GLDEEALDLFRRLQRE 673


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 266/732 (36%), Positives = 411/732 (56%), Gaps = 31/732 (4%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WNA+I       L   + R F  M       +  T   +L  C  + + + G  +H ++ 
Sbjct: 366  WNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV 425

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              G DSNV +CN L+ +Y+       A  +F  M +    D++SWN+++A Y Q G    
Sbjct: 426  KLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTER---DLISWNSMMACYVQDGKCLD 482

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD--- 279
            GL + A +    KV  + V+  +AL+AC++        +C  + E+K V   + V     
Sbjct: 483  GLKILAELLQMGKVM-NHVTFASALAACSN-------PEC--LIESKIVHALIIVAGFHD 532

Query: 280  -VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
             ++  NA+VT Y ++G   +A    KK+ Q   + + VTW+A+I G+A+    +EA+  +
Sbjct: 533  FLIVGNALVTMYGKLGMMMEA----KKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY 588

Query: 339  RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            + ++  G+  N +T+VS+L  C++   LL     H   I   + + G   DD  V N+LI
Sbjct: 589  KLIREKGIPANYITMVSVLGACSAPDDLL----KHGMPIHAHIVLTGFESDDY-VKNSLI 643

Query: 399  DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             MYAKC  ++ +  +FD +   N+   TW  M+ + + +G   +AL +F +M  ++  V 
Sbjct: 644  TMYAKCGDLNSSNYIFDGLG--NKSPITWNAMVAANAHHGCGEEALKIFGEM--RNVGVN 699

Query: 459  PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
             + F+ S  L A A LA L  G+Q+H  V++  +E  +  V N  +DMY + G++     
Sbjct: 700  LDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDL-HVTNAAMDMYGKCGEMHDVLK 758

Query: 519  VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            +      R+ +SW  L++ +  HG   KA   F +M K G  PD VTF+ LL AC+H G+
Sbjct: 759  MLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGL 818

Query: 579  VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            VD+GL Y+DSM++EFG+    EH  CI+DLLGR+ RL  A   I+ MP+ P  + W +LL
Sbjct: 819  VDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLL 878

Query: 639  NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
              CRIH N+EL    A  LLEL+   D +Y L SN+ A +G+W+DV  +R  M    +KK
Sbjct: 879  AACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKK 938

Query: 699  RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            +P CSWV+ K+   +F +G++ HPQ+ +I   L  L++  K  GYVP TSFALHD+D+E+
Sbjct: 939  QPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQ 998

Query: 759  KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
            K   L+ HSE+LALA+G++ T   + +RI KNLR+CGDCHS   F+S I+  +I+LRD  
Sbjct: 999  KEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPY 1058

Query: 819  RFHHFKEGSCTC 830
            RFHHF  G C+C
Sbjct: 1059 RFHHFSGGKCSC 1070



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 251/524 (47%), Gaps = 58/524 (11%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           F LK   E+ S   G ++HA       +  +F  N L+ MY++   + +AR +FDEM   
Sbjct: 99  FPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHR 158

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              +  SW+T+++ Y + G  E  + LF +M G + V+ +G  + + ++AC+  G     
Sbjct: 159 ---NEASWSTMLSGYVRVGLYEEAVGLFCQMWG-LGVEPNGFMVASLITACSRSGY---- 210

Query: 260 KQCGMMEEAKK----VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
               M +E  +    V +   + DV    A+V  Y  IG   +A  LF++M   N    V
Sbjct: 211 ----MADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN----V 262

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W++++ GY+  G+  E L+V+++M+  G+  N  T  ++ S C  +   +LG +   +
Sbjct: 263 VSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGH 322

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            I+          D + V N+LI M++   SV+ A  +FD +     D+ +W  MI +Y+
Sbjct: 323 IIQYGFE------DSVSVANSLISMFSSFSSVEEACYVFDHM--NECDIISWNAMISAYA 374

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            +G   ++L  F  M       + N+ TLS  L  C+ +  L++GR IH  V++   +  
Sbjct: 375 HHGLCRESLRCFHWMRHLHN--ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSN 432

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  + N L+ +YS +G  + A +VF  + +R+++SW S+M  Y   G          ++ 
Sbjct: 433 V-CICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELL 491

Query: 556 KEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           + G   + VTF   L ACS           H+ ++  G         +F I   A     
Sbjct: 492 QMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGF-------HDFLIVGNA----- 539

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           +V + G+   + EA ++++ MP +P  + W AL+ G   HA  E
Sbjct: 540 LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG---HAENE 579



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 151/313 (48%), Gaps = 19/313 (6%)

Query: 337 VFRQMQFCGLEPNVVTLVSL-LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           VF Q Q        +  V+  L G + + + + GK  H + I       GS    +   N
Sbjct: 80  VFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIV------GSVNLGIFQTN 133

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            LI+MY+K  +++ AR +FD +  ++R+ A+W+ M+  Y + G   +A+ LF QM+    
Sbjct: 134 TLINMYSKFGNIEHARYVFDEM--RHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG- 190

Query: 456 LVKPNAFTLSCALMACARLAAL-RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
            V+PN F ++  + AC+R   +   G Q+H +V++      + +V   L+  Y   G + 
Sbjct: 191 -VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDV-YVGTALVHFYGSIGLVY 248

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A+ +F+ +   NVVSWTSLM GY   G   +    + +MR+EG++ +  TF  +  +C 
Sbjct: 249 NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC- 307

Query: 575 HSGMVDQGLKYFDSMSK--EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
             G+++  +  +  +    ++G          ++ +    + ++EA  + + M  E   I
Sbjct: 308 --GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDII 364

Query: 633 IWVALLNGCRIHA 645
            W A+++    H 
Sbjct: 365 SWNAMISAYAHHG 377


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 403/678 (59%), Gaps = 23/678 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +   G   + F+   L+   +    +++ARQ+FD++ +P    +  WN I+  Y++
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRP---QVFPWNAIIRGYSR 96

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +   +  L+++++M    +V  D  +  + L AC  L     G+         +VF    
Sbjct: 97  NNHFQDALLMYSKMQL-ARVSPDSFTFPHLLKACGGLSHLQMGRFV-----HAQVFRLGF 150

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV   N ++  Y++      A  +F+ +     +  +V+W+A+++ YAQ G   EAL+
Sbjct: 151 EADVFVQNGLIALYAKCRRLGCARTVFEGLPLP--ERTIVSWTAIVSAYAQNGEPVEALE 208

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F QM+   ++P+ V LVS+L+    +  L  G+  H   +K  L  +   PD L+ +N 
Sbjct: 209 IFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE---PDLLISLNT 265

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
              MYAKC  V  A+++FD +  K+ ++  W  MI  Y++NG A DA+ LF +M  +D  
Sbjct: 266 ---MYAKCGQVATAKILFDKM--KSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD-- 318

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+P+  +++ A+ ACA++ +L   R +  YV R+ Y   + F+++ LIDM+++ G ++ A
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDV-FISSALIDMFAKCGSVECA 377

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R VFD    R+VV W++++ GYG+HG   +A   +  M ++G+ P+ VTFL LL AC+HS
Sbjct: 378 RSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHS 437

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +G  +F+ M+ +  I+ + +HYACI+DLLGRA  LD+A E+I+ MP++P   +W A
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ C+ H +VELG+ AA +L  ++    G Y  LSN+YA A  W  VA +R  MK  G+
Sbjct: 497 LLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
            K  GCSWV+ +     F VGD++HP+ ++I   +  +  R+K  G+V     +LHD++D
Sbjct: 557 NKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EE  + L  HSE++ +AYG+++T  GT +RITKNLR C +CH+A   IS ++  EI++RD
Sbjct: 617 EEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRD 676

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFHHFK+G C+C  YW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694



 Score =  206 bits (523), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 159/532 (29%), Positives = 257/532 (48%), Gaps = 79/532 (14%)

Query: 52  QVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRR 109
           Q+  IH +++V  L  +    + LI A  S+   + A  +   + P P  VF WNA+IR 
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDL-PRP-QVFPWNAIIRG 93

Query: 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
             R     +A  ++ +M      PD +TFP +LKACG L   + G  VHA +   GF+++
Sbjct: 94  YSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEAD 153

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
           VFV N L+A+YA+C  L  AR +F+ +  P    IVSW  IV+AYAQ+G+    L +F++
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERT-IVSWTAIVSAYAQNGEPVEALEIFSQ 212

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCG 263
           M   + V+ D V+LV+ L+A   L    +G+                          +CG
Sbjct: 213 MR-KMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCG 271

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            +  AK +F++MK  +++ WNAM++GY++ G  +DA  LF +M  ++V+           
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVR----------- 320

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
                                   P+ +++ S +S CA VG+L   +    Y  +     
Sbjct: 321 ------------------------PDTISITSAISACAQVGSLEQARWMDEYVSR----- 351

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
              + DD+ + +ALIDM+AKC SV+ AR +FD     +RDV  W+ MI  Y  +G A +A
Sbjct: 352 -SDYRDDVFISSALIDMFAKCGSVECARSVFDRTL--DRDVVVWSAMIVGYGLHGQAREA 408

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           ++L+  M ++D  V PN  T    L+AC     +R G      +  ++        A C+
Sbjct: 409 ISLYRAM-ERDG-VHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYA-CI 465

Query: 504 IDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           ID+  R+G +D A  V   +  Q  V  W +L++    H   +   +A  Q+
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQL 517



 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 180/418 (43%), Gaps = 91/418 (21%)

Query: 43  LLRQCKSLTQVYL---IHQQII---------VQNLTHVPPSHLIAAYVSHNAPSPALSLL 90
           LL+ C  L+ + +   +H Q+          VQN        LIA Y        A ++ 
Sbjct: 125 LLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQN-------GLIALYAKCRRLGCARTVF 177

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
           + +     ++  W A++    +   P  A  +F QM +    PD      VL A   L  
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQD 237

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
              G S+HA +   G ++   +  +L  MYA+C  ++ A+ LFD+M  P   +++ WN +
Sbjct: 238 LEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSP---NLILWNAM 294

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------- 260
           ++ YA++G A+  + LF  M  +  V+ D +S+ +A+SACA +G+  + +          
Sbjct: 295 ISGYAKNGFAKDAIDLFHEMI-NKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSD 353

Query: 261 ----------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
                           +CG +E A+ VF+R   +DVV W+AM+ GY   G   +A +L++
Sbjct: 354 YRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYR 413

Query: 305 KMRQENVKLNVVT-----------------------------------WSAVIAGYAQRG 329
            M ++ V  N VT                                   ++ +I    + G
Sbjct: 414 AMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAG 473

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
           H  +A +V + M    ++P V    +LLS C     + LGK    Y  +++ S+D S+
Sbjct: 474 HLDQAYEVIKCMP---VQPGVTVWGALLSACKKHRHVELGK----YAAQQLFSIDPSN 524


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 384/660 (58%), Gaps = 35/660 (5%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           +++ Y R + L  A  LFDEM    + D+VSWN++++   + GD +  + +F  M     
Sbjct: 72  MISGYTRSNRLVDALNLFDEM---PLRDVVSWNSMISGCVECGDIDTAVKMFDEMP---- 124

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
            +   VS    ++ C   G         M+++A+++F +M VKD+ +WNAMV GY + G 
Sbjct: 125 -ERSVVSWTAMVNGCFRFG---------MVDQAERLFCQMPVKDIAAWNAMVHGYLQFGK 174

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            +DA  LFK+M ++NV    ++W+ +I G  Q     EAL++F+ M  C ++    T   
Sbjct: 175 VDDALKLFKQMPRKNV----ISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTC 230

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           +++ CA+  A  +G + H + IK     +        V  +LI +YA CK  + +R +F 
Sbjct: 231 VITACANAPAFHMGTQVHGFIIKSGFLYEE------YVTASLITLYANCKRTEDSRKVFG 284

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +   +  VA WT ++  YS N    DAL +F +M +   L  PN  T +  L +C+ L 
Sbjct: 285 EMV--HEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSIL--PNQSTFASGLNSCSALG 340

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            L +G++IH   ++      + FV N L+ MYS SG+++ A  VF  + ++++VSW S++
Sbjct: 341 TLDWGKEIHGVAVKLGLGT-VAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSII 399

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG- 594
            G   HG G  A   F QM +    PD +TF  LL ACSH G + +G K F  +S     
Sbjct: 400 VGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNH 459

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I  + +HY C+VD+LGR   L EA +LIE M ++P  ++W+ALL+ CR+H++V+ GE AA
Sbjct: 460 IDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAA 519

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
             +  L+S+   +Y LLSNIYA+AGRW  V+++R  MK  G+ K+PG SWV  +     F
Sbjct: 520 AAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEF 579

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
           F GDR  P   +I+E L  L +++K +GYVP    ALHDV+DE+K ++L+ HSE+LA+A+
Sbjct: 580 FSGDR--PHCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAF 637

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G++ T  G+ + + KNLR+C DCH+ I  IS ++  +I+LRD  RFHHFK G C+C  YW
Sbjct: 638 GLINTVEGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 165/363 (45%), Gaps = 24/363 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  Y+       AL L +++     +V  W  +I    +      A  LF  M+R    
Sbjct: 165 MVHGYLQFGKVDDALKLFKQMPRK--NVISWTTMICGLDQNERSGEALNLFKNMLRCCIK 222

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
               TF  V+ AC   P+   G+ VH  I  SGF    +V  +L+ +YA C     +R++
Sbjct: 223 STSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKV 282

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F EM       +  W  +++ Y+ +   E  L +F+ M  +  +  +  +  + L++C++
Sbjct: 283 FGEMVHE---KVAVWTALLSGYSLNRKHEDALNVFSEMIRN-SILPNQSTFASGLNSCSA 338

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVV-SWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           LGT   GK      E   V  ++ +  V    N++V  YS  G+  DA ++F     E  
Sbjct: 339 LGTLDWGK------EIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVF----IEIF 388

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K ++V+W+++I G AQ G G  A  +F QM     EP+ +T   LLS C+  G L  G++
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRK 448

Query: 372 THCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
              Y     +S   +H D  +     ++D+  +C  +  A  + +++  K  ++  W  +
Sbjct: 449 LFYY-----ISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEM-VWLAL 502

Query: 431 IGS 433
           + +
Sbjct: 503 LSA 505


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 285/795 (35%), Positives = 444/795 (55%), Gaps = 55/795 (6%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSH----NAPSPALSLLQRISPSPFSVFWWN 104
           + + +  +H QII  +L H   ++ +A  ++H     AP     LL   + +P +VF + 
Sbjct: 13  NFSHLRQLHAQIIHNSLHH--HNYWVALLINHCTRLRAPPHYTHLLFNSTLNP-NVFVFT 69

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           +++R    L+       +F  M   G  PD + +P ++K+ G       G   HA +   
Sbjct: 70  SMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN-----GGIGFHAHVLKL 124

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEM--FQPGICDIVSWNTIVAAYAQSGDAEG 222
           G  S+ FV NA++ MYAR   + +AR++FDE+  ++  + D   WN +V+ Y +      
Sbjct: 125 GHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVAD---WNAMVSGYWKWESEGQ 181

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF           D +   N ++  A +  +++ K    +E A++ F+ M  + VVS
Sbjct: 182 AQWLF-----------DVMPERNVITWTAMVTGYAKVKD---LEAARRYFDCMPERSVVS 227

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           WNAM++GY++ G  E+   LF +M    ++ +  TW  VI+  + RG    A  + R + 
Sbjct: 228 WNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH 287

Query: 343 FCGLEPNVVTLVSLL---SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
              ++ N     +LL   + C S+GA            +R+    G++ + +   NA+I 
Sbjct: 288 QKQIQLNCFVRTALLDMYAKCGSIGA-----------ARRIFDELGAYRNSV-TWNAMIS 335

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            Y +  ++D AR +F+ +  +N  V TW  MI  Y+QNG +  A+ LF +M    KL  P
Sbjct: 336 AYTRVGNLDSARELFNTMPGRN--VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT-P 392

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +  T+   + AC  L AL  G  +  ++  NQ ++ I    N +I MYSR G ++ A+ V
Sbjct: 393 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISG-HNAMIFMYSRCGSMEDAKRV 451

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  +  R+VVS+ +L++G+  HG G +A      M++ G+ PD VTF+ +L ACSH+G++
Sbjct: 452 FQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 511

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           ++G K F+S+ K+  I    +HYAC+VDLLGR   L++A   +E MPMEP   ++ +LLN
Sbjct: 512 EEGRKVFESI-KDPAI----DHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLN 566

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
             RIH  VELGELAAN+L ELE +  G++ LLSNIYA+AGRWKDV RIR  MK  GVKK 
Sbjct: 567 ASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKT 626

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
            G SWV+       F V DR+H +S  IY++L  L ++++  GY+   S  L DV++EEK
Sbjct: 627 TGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEK 686

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
            +++  HSEKLA+ Y +L +  G  IR+ KNLR+C DCH+AI  IS +    II+RD+NR
Sbjct: 687 EEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNR 746

Query: 820 FHHFKEGSCTCKGYW 834
           FH F +G C+CK YW
Sbjct: 747 FHCFNDGLCSCKDYW 761


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/707 (37%), Positives = 402/707 (56%), Gaps = 35/707 (4%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D      V++   +    R G  +HA++  +G+    F+ N L+ MY++C  L +A +LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACA 251
           D M Q    ++VSW  +++  +Q+      +  F   R+ G+V  Q    +  +A+ ACA
Sbjct: 64  DTMPQR---NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQ---FAFSSAIRACA 117

Query: 252 SLGTWSRGKQ--CGMMEEA--KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           SLG+   GKQ  C  ++     ++F    ++D+         YS+ G+  DA  +F++M 
Sbjct: 118 SLGSIEMGKQMHCLALKFGIGSELFVGSNLEDM---------YSKCGAMFDACKVFEEMP 168

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            ++     V+W+A+I GY++ G   EAL  F++M    +  +   L S L  C ++ A  
Sbjct: 169 CKDE----VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACK 224

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G+  H   +K           D+ V NAL DMY+K   ++ A  +F  I  + R+V ++
Sbjct: 225 FGRSVHSSVVKL------GFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSY 277

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T +I  Y +       L++F ++ +Q   ++PN FT S  + ACA  AAL  G Q+HA V
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVELRRQG--IEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           ++  ++   PFV++ L+DMY + G ++ A   FD +     ++W SL++ +G HGLG  A
Sbjct: 336 MKINFDE-DPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F++M   G+ P+ +TF+ LL  CSH+G+V++GL YF SM K +G+    EHY+C++D
Sbjct: 395 IKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LLGRA RL EA E I  MP EP    W + L  CRIH + E+G+LAA +L++LE +  G+
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
             LLSNIYAN  +W+DV  +R  M+   VKK PG SWV     T  F   D +H +   I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAI 574

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
           YE L  L+ +IKA GYVP T     D+DD  K  LL  HSE++A+A+ +++   G PI +
Sbjct: 575 YEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIV 634

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+C DCHSAI FIS +   +II+RD++RFHHF +GSC+C  YW
Sbjct: 635 KKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 227/503 (45%), Gaps = 31/503 (6%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +HL+  Y        AL L   +     ++  W A+I    +      A R F  M   G
Sbjct: 44  NHLVNMYSKCGELDHALKLFDTMPQR--NLVSWTAMISGLSQNSKFSEAIRTFCGMRICG 101

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P ++ F   ++AC  L S   G  +H +    G  S +FV + L  MY++C  +  A 
Sbjct: 102 EVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDAC 161

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++F+EM      D VSW  ++  Y++ G+ E  L+ F +M  D +V  D   L + L AC
Sbjct: 162 KVFEEM---PCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI-DEEVTIDQHVLCSTLGAC 217

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
            +L     G+        K  FE     D+   NA+   YS+ G  E A  +F     ++
Sbjct: 218 GALKACKFGRSV-HSSVVKLGFE----SDIFVGNALTDMYSKAGDMESASNVFG---IDS 269

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              NVV+++ +I GY +     + L VF +++  G+EPN  T  SL+  CA+  AL  G 
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 329

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           + H   +K  ++ D    +D  V + L+DMY KC  ++ A   FD I         W  +
Sbjct: 330 QLHAQVMK--INFD----EDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTE--IAWNSL 381

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           +  + Q+G   DA+  F +M   D+ VKPNA T    L  C+    +  G   + Y +  
Sbjct: 382 VSVFGQHGLGKDAIKFFERMV--DRGVKPNAITFISLLTGCSHAGLVEEGLD-YFYSMDK 438

Query: 491 QYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
            Y  ++P   +  C+ID+  R+G +  A+   + +  + N   W S +    +HG  +  
Sbjct: 439 TYG-VVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMG 497

Query: 548 HWAFDQMRKEGLAPDGVTFLVLL 570
             A +++ K  L P     LVLL
Sbjct: 498 KLAAEKLVK--LEPKNSGALVLL 518



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 23/265 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  +  LI   V     +    +F+++ R+G  P+E+TF  ++KAC    +   G+ +H
Sbjct: 273 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +    FD + FV + L+ MY +C  L +A Q FDE+  P     ++WN++V+ + Q G
Sbjct: 333 AQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDP---TEIAWNSLVSVFGQHG 389

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM-KV 277
             +  +  F RM  D  V+ + ++ ++ L+ C+           G++EE    F  M K 
Sbjct: 390 LGKDAIKFFERMV-DRGVKPNAITFISLLTGCS---------HAGLVEEGLDYFYSMDKT 439

Query: 278 KDVVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             VV     ++ ++    R G  ++A     +M  E    N   W + +   A R HG +
Sbjct: 440 YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEP---NAFGWCSFLG--ACRIHGDK 494

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLS 358
            +      +   LEP     + LLS
Sbjct: 495 EMGKLAAEKLVKLEPKNSGALVLLS 519


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 280/821 (34%), Positives = 432/821 (52%), Gaps = 82/821 (9%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  S LI  Y++H     A+ L   I  S  +V +WN +I   +  +L      LF  M+
Sbjct: 46  VLGSRLIDIYLAHGEVDNAIKLFDDIPSS--NVSFWNKVISGLLAKKLASQVLGLFSLMI 103

Query: 128 RRGWHPDEYTFPFVLKAC--GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
                PDE TF  VL+AC  G+ P  +    +HA I   GF S+  VCN L+ +Y++   
Sbjct: 104 TENVTPDESTFASVLRACSGGKAPF-QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGH 162

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  A+ +F+ +F   + D VSW  +++  +Q+G  +  ++LF +M     +    V   +
Sbjct: 163 VDLAKLVFERLF---LKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV-FSS 218

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            LSAC  +  +  G+Q         + +     +    NA+VT YSR G+   A  +F K
Sbjct: 219 VLSACTKIELFKLGEQLHGF-----IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSK 273

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +     ++++++I+G AQRG    AL +F +MQ   ++P+ VT+ SLLS CASVGA
Sbjct: 274 MHRRDR----ISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
              GK+ H Y IK  +S       DL++  +L+D+Y KC  ++ A   F  +  +  +V 
Sbjct: 330 GYKGKQLHSYVIKMGMS------SDLIIEGSLLDLYVKCFDIETAHEYF--LTTETENVV 381

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W VM+ +Y Q G  +++  +F QM  Q + + PN +T    L  C  L AL  G QIH 
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQM--QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHT 439

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            V+++ ++  + +V + LIDMY++ G++DTAR +   L++ +VVSWT+++ GY  H L  
Sbjct: 440 QVIKSGFQFNV-YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFA 498

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK-----YFDSMSKEFGISARAE 600
           +A   F +M  +G+  D + F   + AC+    ++QG +     Y    S++  I   A 
Sbjct: 499 EALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSI-GNAL 557

Query: 601 HYACIVDLLGRANRLD-------------------------------EAVELIEGM---- 625
               ++ L  +   ++                               EAV L E M    
Sbjct: 558 ASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLG 617

Query: 626 ------------PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
                       P+EP  +IW  LL+ C +H N+E+GE AA  LLELE E   +Y LLSN
Sbjct: 618 LMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSN 677

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA +G+W    R R +MK  GVKK PG SW++ K     FFVGDR HP +++IYE +  
Sbjct: 678 MYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDD 737

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           L +R   +GYV      L+DV+ E+K    + HSEKLA+A+G+L+     PIR+ KNLR+
Sbjct: 738 LNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRV 797

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH+ I F+S I N  I++RD+ RFHHF+ G C+CK YW
Sbjct: 798 CNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 249/527 (47%), Gaps = 41/527 (7%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M  RG   +  T+ ++ + C    S      +HA I  SGFD    + + L+ +Y     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  A +LFD++  P   ++  WN +++       A   L LF+ M  +  V  D  +  +
Sbjct: 61  VDNAIKLFDDI--PS-SNVSFWNKVISGLLAKKLASQVLGLFSLMITE-NVTPDESTFAS 116

Query: 246 ALSACASLGTWSRGKQCGMMEE---AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
            L AC      S GK    + E   AK +        +V  N ++  YS+ G  + A  +
Sbjct: 117 VLRAC------SGGKAPFQVTEQIHAKIIHHGFGSSPLVC-NPLIDLYSKNGHVDLAKLV 169

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F+++  ++     V+W A+I+G +Q G   EA+ +F QM    + P      S+LS C  
Sbjct: 170 FERLFLKDS----VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTK 225

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           +    LG++ H + +K  LS       +  V NAL+ +Y++  ++  A  +F  +    R
Sbjct: 226 IELFKLGEQLHGFIVKWGLS------SETFVCNALVTLYSRWGNLIAAEQIFSKM--HRR 277

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           D  ++  +I   +Q G ++ AL LF +M  Q   +KP+  T++  L ACA + A   G+Q
Sbjct: 278 DRISYNSLISGLAQRGFSDRALQLFEKM--QLDCMKPDCVTVASLLSACASVGAGYKGKQ 335

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +H+YV++      +  +   L+D+Y +  DI+TA   F   +  NVV W  ++  YG  G
Sbjct: 336 LHSYVIKMGMSSDL-IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLG 394

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK---EFGISARA 599
              +++W F QM+ EGL P+  T+  +L  C+  G +D G +    + K   +F +    
Sbjct: 395 NLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV---- 450

Query: 600 EHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
             Y C  ++D+  +   LD A  +++ +  E   + W A++ G   H
Sbjct: 451 --YVCSVLIDMYAKHGELDTARGILQRLREEDV-VSWTAMIAGYTQH 494


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 283/793 (35%), Positives = 438/793 (55%), Gaps = 34/793 (4%)

Query: 56  IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRI-SPSPFSVFWWNALIRRAVR 112
           IH QI  ++     V  + LI+ Y    +   A     R+   S   V  WNA+I   +R
Sbjct: 29  IHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLR 88

Query: 113 LRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGE--LPSSRCGSSVHAVICSSGFDSN 169
                 A +LF  M   G  P +  TF  VL +C E  L S     ++H  I  +G +  
Sbjct: 89  NGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIERE 148

Query: 170 VFVCNALMAMYARCDTLSYARQLF----DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            FV  AL+  Y +  +L  A ++F    DE  +P    +V+ + +++A  Q+G  +  L 
Sbjct: 149 AFVRTALVDSYGKLGSLDDAWEVFLRKSDE--EPST-SLVTCSAMISACWQNGWPQESLR 205

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           LF  M  +   +  GV+LV+ L+AC+ L   S      ++E+A +V      +D V    
Sbjct: 206 LFYAMNLE-GTKPSGVTLVSVLNACSMLPVGS--ATAFVLEQAMEVVS--ATRDNVLGTT 260

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++T Y+R      A A F  ++  +V    V+W+A+ A Y Q     EAL +F +M   G
Sbjct: 261 LLTTYARSNDLSRARATFDAIQSPDV----VSWNAMAAAYLQHHRPREALVLFERMLLEG 316

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV--DGSHPDDLMVINALIDMYAK 403
           + P+V T ++ L+ CA+        +T     KR+ S+  +     D  V NA ++MYAK
Sbjct: 317 VRPSVATFITALTACAA-----YPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAK 371

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C S+  AR +F+ I+P  RD  TW  M+ +Y  +G   +A  LF Q  + +KLVKPN  T
Sbjct: 372 CGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELF-QAMEAEKLVKPNKVT 430

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD-- 521
               L A     ++  GR+IHA V+ N +E     + N L++MY++ G +D A+ +FD  
Sbjct: 431 FVAVLDASTSRTSIAQGREIHARVVSNGFES-DTVIQNALLNMYAKCGSLDDAQAIFDKS 489

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +  Q +V++WTSL+ GY  +G  ++A   F  M+++G+ P+ +TF+  L AC+H G ++Q
Sbjct: 490 SSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQ 549

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G +    M+ + GI   ++H++CIVDLLGR  RLDEA +L+E    +   I W+ALL+ C
Sbjct: 550 GCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDAC 608

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           +    +E GE  A R+++L+ E   SY +L+++YA AGRW + A IR  M   G++  PG
Sbjct: 609 KNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPG 668

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CS V+  +   +F  GD++HP+S++IY  L  L   IKA GYV  T   LHDV  E K  
Sbjct: 669 CSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKER 728

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           LL  HSEKLA+A+G+++T  G+P+R+ KNLR+C DCH+A   IS +   +I++RDS+R+H
Sbjct: 729 LLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYH 788

Query: 822 HFKEGSCTCKGYW 834
           HF  G+C+C  YW
Sbjct: 789 HFTSGTCSCGDYW 801



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 260/519 (50%), Gaps = 29/519 (5%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ +    ++ AC  L +   G  +H+ I    F+ N  + NAL++MY++C +L  A+Q 
Sbjct: 5   PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQA 64

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD + +    D+V+WN +++A+ ++G A   L LF  M  D     + V+ V+ L +C  
Sbjct: 65  FDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVE 124

Query: 253 LGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
            G  S       +E+ + +  R+      ++     A+V  Y ++GS +DA+ +F +   
Sbjct: 125 AGLLS-------LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSD 177

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           E    ++VT SA+I+   Q G   E+L +F  M   G +P+ VTLVS+L+ C+    L +
Sbjct: 178 EEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS---MLPV 234

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G  T  + +++ + V  +  D+++    L+  YA+   +  AR  FDAI  ++ DV +W 
Sbjct: 235 GSAT-AFVLEQAMEVVSATRDNVLGTT-LLTTYARSNDLSRARATFDAI--QSPDVVSWN 290

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL---AALRFGRQIHA 485
            M  +Y Q+    +AL LF +M  +   V+P+  T   AL ACA      A   G++I +
Sbjct: 291 AMAAAYLQHHRPREALVLFERMLLEG--VRPSVATFITALTACAAYPPQTASAIGKRIQS 348

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGL 543
            +     E     VAN  ++MY++ G +  AR VF+ +   +R+ ++W S++  YG HGL
Sbjct: 349 LLEEAGLEGDTA-VANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGL 407

Query: 544 GDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
           G +A   F  M  E L  P+ VTF+ +L A +    + QG +    +    G  +     
Sbjct: 408 GKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSN-GFESDTVIQ 466

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNG 640
             ++++  +   LD+A  + +        +I W +L+ G
Sbjct: 467 NALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAG 505



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 156/371 (42%), Gaps = 80/371 (21%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C SL     + ++I       +  + ++AAY  H                         
Sbjct: 371 KCGSLADARAVFERISPTRRDCITWNSMLAAYGHHG------------------------ 406

Query: 106 LIRRAVRLRLPDNAFRLFLQM-MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
                    L   AF LF  M   +   P++ TF  VL A     S   G  +HA + S+
Sbjct: 407 ---------LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSN 457

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           GF+S+  + NAL+ MYA+C +L  A+ +FD+       D+++W ++VA YAQ G AE  L
Sbjct: 458 GFESDTVIQNALLNMYAKCGSLDDAQAIFDKS-SSNQEDVIAWTSLVAGYAQYGQAERAL 516

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG------------------------- 259
            LF  M     V+ + ++ ++AL+AC   G   +G                         
Sbjct: 517 KLFWTMQQQ-GVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVD 575

Query: 260 --KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG ++EA+K+ ER    DV++W A++         E      +++ Q + ++   +
Sbjct: 576 LLGRCGRLDEAEKLLERTSQADVITWMALLDACKNSKELERGERCAERIMQLDPEV-ASS 634

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           +  + + YA  G  +EA  + + M   G+  +         GC++V    + +E H ++ 
Sbjct: 635 YIVLASMYAAAGRWNEAATIRKTMLDKGIRAD--------PGCSAVE---VNQELHSFS- 682

Query: 378 KRVLSVDGSHP 388
               + D SHP
Sbjct: 683 ----AGDKSHP 689



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+PN   L   + AC+ L  L  GR+IH+ +    +E     + N LI MYS+ G +  A
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEE-NSVLGNALISMYSKCGSLIDA 61

Query: 517 RVVFDNL---KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APDGVTFLVLLYA 572
           +  FD L    +R+VV+W ++++ +  +G   +A   F  M  +G   P+ VTF+ +L +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 573 CSHSGMVD-QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL-IEGMPMEPT 630
           C  +G++  + ++         GI   A     +VD  G+   LD+A E+ +     EP+
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 631 P--IIWVALLNGC 641
              +   A+++ C
Sbjct: 182 TSLVTCSAMISAC 194


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/732 (35%), Positives = 414/732 (56%), Gaps = 24/732 (3%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            +N+LI   V+    D A  LF +M R    PD  T   +L AC  + +   G  +H+   
Sbjct: 330  YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             +G  +++ +  +L+ +Y++C  +  A + F         +IV WN ++ AY Q  +   
Sbjct: 390  KAGMSADIILEGSLLDLYSKCADVETAHKFF---LXTETENIVLWNVMLVAYGQLDNLSD 446

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
               +F +M  +  +  +  +  + L  C SLG    G+Q         V +     +V  
Sbjct: 447  SFEIFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLGEQI-----HTHVIKTGFQLNVYV 500

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             + ++  Y++ G    A  + +++ +++V    V+W+A+IAGY Q     EAL +F +M+
Sbjct: 501  CSVLIDMYAKYGQLALALRILRRLPEDDV----VSWTAMIAGYVQHDMFSEALQLFEEME 556

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            + G++ + +   S +S CA + AL  G++ H        S       DL + NALI +YA
Sbjct: 557  YRGIQFDNIGFASAISACAGIRALRQGQQIHAQ------SYAAGFGADLSINNALISLYA 610

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            +C  +  A + F+ I  KN    +W  ++   +Q+G   +AL +F +M + +  V  N F
Sbjct: 611  RCGRIQEAYLAFEKIGDKNN--ISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV--NMF 666

Query: 463  TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            T   A+ A A LA ++ G+QIH+ VL+  Y+     V+N LI +Y++SG I  A   F++
Sbjct: 667  TYGSAISAAASLANIKQGQQIHSMVLKTGYDSERE-VSNSLISLYAKSGSISDAWREFND 725

Query: 523  LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            + +RNV+SW +++TGY  HG G +A   F++M+  G+ P+ VTF+ +L ACSH G+V +G
Sbjct: 726  MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785

Query: 583  LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            L YF+SM K   +  ++EHY C+VDLLGRA +LD A+E I+ MP+    +IW  LL+ C 
Sbjct: 786  LDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACV 845

Query: 643  IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            IH N+E+GE AA+ LLELE E   +Y L+SNIYA + +W      R LMK  GVKK PG 
Sbjct: 846  IHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGR 905

Query: 703  SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
            SW++ K     F+ GD+ HP + +IYE +  L +R   +GYV  +   L++ +  +K  +
Sbjct: 906  SWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPI 965

Query: 763  LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
               HSEKLA+A+G+L+     PIR+ KNLR+C DCH+ I ++S I N  II+RD++RFHH
Sbjct: 966  THVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHH 1025

Query: 823  FKEGSCTCKGYW 834
            F  G C+CK +W
Sbjct: 1026 FDGGVCSCKDFW 1037



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 173/595 (29%), Positives = 291/595 (48%), Gaps = 35/595 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y  H     A+ +      S  SVF WN +I   V  +     F LF +M+  G  
Sbjct: 99  LVDNYFRHGDQHGAVKVFDE--NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 133 PDEYTFPFVLKAC--GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           P+ YTF  VLKAC  G++  +     VH+     GFDS+  V N L+ +Y++   +  A+
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYV-KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 191 QLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           ++F+      IC  DIV+W  +++  +Q+G  E  ++LF  M    ++      L + LS
Sbjct: 216 KVFN-----CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHAS-EIFPTPYVLSSVLS 269

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           A   +  +  G+Q   +     V +     +    N +V  YSR      A  +F  M  
Sbjct: 270 ASTKIQLFELGEQLHCL-----VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNS 324

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +     V+++++I+G  Q+G    AL++F +MQ   L+P+ +T+ SLLS CASVGAL  
Sbjct: 325 RDG----VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G + H + IK  +S       D+++  +L+D+Y+KC  V+ A   F  +  +  ++  W 
Sbjct: 381 GMQLHSHAIKAGMSA------DIILEGSLLDLYSKCADVETAHKFF--LXTETENIVLWN 432

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           VM+ +Y Q    +D+  +F QM Q + ++ PN FT    L  C  L AL  G QIH +V+
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQM-QMEGMI-PNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  +++ + +V + LIDMY++ G +  A  +   L + +VVSWT+++ GY  H +  +A 
Sbjct: 491 KTGFQLNV-YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEAL 549

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F++M   G+  D + F   + AC+    + QG +   + S   G  A       ++ L
Sbjct: 550 QLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISL 608

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
             R  R+ EA    E +  +   I W +L++G       E       R+L  E+E
Sbjct: 609 YARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 242/489 (49%), Gaps = 47/489 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN ++    +L    ++F +F QM   G  P+++T+P +L+ C  L +   G  +H
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  +GF  NV+VC+ L+ MYA+   L+ A ++   + +    D+VSW  ++A Y Q  
Sbjct: 487 THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPED---DVVSWTAMIAGYVQHD 543

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF  M     +Q D +   +A+SACA +    +G+Q      A      + + 
Sbjct: 544 MFSEALQLFEEMEYR-GIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                NA+++ Y+R G  ++A+  F+K+  +    N ++W+++++G AQ G+  EAL VF
Sbjct: 603 -----NALISLYARCGRIQEAYLAFEKIGDK----NNISWNSLVSGLAQSGYFEEALQVF 653

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M     E N+ T  S +S  AS+  +  G++ H   +K        +  +  V N+LI
Sbjct: 654 VRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKT------GYDSEREVSNSLI 707

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            +YAK  S+  A   F+ ++ +N  V +W  MI  YSQ+G   +AL LF +M  +   + 
Sbjct: 708 SLYAKSGSISDAWREFNDMSERN--VISWNAMITGYSQHGCGMEALRLFEEM--KVCGIM 763

Query: 459 PNAFTLSCALMACARLAALRFGR-------QIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           PN  T    L AC+ +  ++ G        +IH  V ++++ +       C++D+  R+G
Sbjct: 764 PNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV-------CVVDLLGRAG 816

Query: 512 DIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFL 567
            +D A      +    + + W +L++   +H    +G++A     ++  E    D  T++
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE----DSATYV 872

Query: 568 VL--LYACS 574
           ++  +YA S
Sbjct: 873 LISNIYAVS 881



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
           F +++ V+ N       L  C    +L    ++H  + ++ ++   P + + L+D Y R 
Sbjct: 48  FMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE-PLLIDSLVDNYFRH 106

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           GD   A  VFD    R+V SW  ++  +       +    F +M  EG+ P+G TF  +L
Sbjct: 107 GDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVL 166

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            AC    +    +K   S +  +G  +       ++DL  +   ++ A ++   + M+  
Sbjct: 167 KACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDI 226

Query: 631 PIIWVALLNG 640
            + WVA+++G
Sbjct: 227 -VTWVAMISG 235


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 299/837 (35%), Positives = 434/837 (51%), Gaps = 65/837 (7%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP----PSHLIAAYVSHNAPSPALSLL 90
           P IK ++  LR  +S      IH   + + L H P     + L+ AY        AL+L 
Sbjct: 53  PAIK-SAAALRDSRS---TRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALF 108

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
               P       +N+LI      R   +A      M+        +T   VL AC  L  
Sbjct: 109 AATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLA-DHEVSSFTLVSVLLACSHLAD 167

Query: 151 S--RCGSSVHAVICSSGF---DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
              R G   HA     GF       F  NAL++MYAR   +  A++LF      G+ D+V
Sbjct: 168 QGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSS-GAGVGDLV 226

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           +WNT+++   Q G  E  + +   M   + V+ DGV+  +AL AC+ L     G++    
Sbjct: 227 TWNTMISLLVQGGRCEEAVQVLYDMVA-LGVRPDGVTFASALPACSRLELLGVGREVHAF 285

Query: 266 -----EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                + A   F    + D+ + N  V+   R+         F  + +   +L +  W+A
Sbjct: 286 VLKDDDLAANSFVASALVDMYASNEQVSHARRV---------FDMVPEHGRQLGM--WNA 334

Query: 321 VIAGYAQRG-HGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKET-HCYTI 377
           +I GYAQ G    EA+++F +M+   G  P+  T+  +L  CA    +  GKE  H Y +
Sbjct: 335 MICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVV 393

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           KR ++       +  V NAL+DMYA+   +D A  +F  I    RD+ +W  +I      
Sbjct: 394 KRDMA------SNRFVQNALMDMYARLGRMDEAHTIFAMI--DLRDIVSWNTLITGCIVQ 445

Query: 438 GGANDALALFPQM------------FQQD------KLVKPNAFTLSCALMACARLAALRF 479
           G  ++A  L  +M             + D      +   PN  TL   L  CA LAA   
Sbjct: 446 GLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPAR 505

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G++IH Y +R+  E  +  V + L+DMY++ G +  AR VFD L +RNV++W  L+  YG
Sbjct: 506 GKEIHGYAVRHALESDLA-VGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYG 564

Query: 540 MHGLGDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
           MHGLGD+A   FD+M   G A P+ VTF+  L ACSHSG+VD+GL+ F  M +++G    
Sbjct: 565 MHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPT 624

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNGCRIHANVELGELAANRL 657
              +AC+VD+LGRA RLDEA  +I  M P E     W  +L  CR+H NV+LG +AA RL
Sbjct: 625 PYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERL 684

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
            ELE ++   Y LL NIY+ AG W++   +R +M+  GV K PGCSW++       F  G
Sbjct: 685 FELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAG 744

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           +  HP+S +++  +  L +R++  GYVP TS  LHDVD+ EK  +L  HSEKLA+A+G+L
Sbjct: 745 ESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLL 804

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              PG  IR+ KNLR+C DCH A  FIS ++  EI+LRD  RFHHF++G+C+C  YW
Sbjct: 805 RAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/732 (35%), Positives = 414/732 (56%), Gaps = 24/732 (3%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            +N+LI   V+    D A  LF +M R    PD  T   +L AC  + +   G  +H+   
Sbjct: 330  YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             +G  +++ +  +L+ +Y++C  +  A + F         +IV WN ++ AY Q  +   
Sbjct: 390  KAGMSADIILEGSLLDLYSKCADVETAHKFF---LTTETENIVLWNVMLVAYGQLDNLSD 446

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
               +F +M  +  +  +  +  + L  C SLG    G+Q         V +     +V  
Sbjct: 447  SFEIFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLGEQI-----HTHVIKTGFQLNVYV 500

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             + ++  Y++ G    A  + +++ +++V    V+W+A+IAGY Q     EAL +F +M+
Sbjct: 501  CSVLIDMYAKYGQLALALRILRRLPEDDV----VSWTAMIAGYVQHDMFSEALQLFEEME 556

Query: 343  FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            + G++ + +   S +S CA + AL  G++ H        S       DL + NALI +YA
Sbjct: 557  YRGIQFDNIGFASAISACAGIRALRQGQQIHAQ------SYAAGFGADLSINNALISLYA 610

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            +C  +  A + F+ I  KN    +W  ++   +Q+G   +AL +F +M + +  V  N F
Sbjct: 611  RCGRIQEAYLAFEKIGDKNN--ISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV--NMF 666

Query: 463  TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            T   A+ A A LA ++ G+QIH+ VL+  Y+     V+N LI +Y++SG I  A   F++
Sbjct: 667  TYGSAISAAASLANIKQGQQIHSMVLKTGYDSERE-VSNSLISLYAKSGSISDAWREFND 725

Query: 523  LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            + +RNV+SW +++TGY  HG G +A   F++M+  G+ P+ VTF+ +L ACSH G+V +G
Sbjct: 726  MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785

Query: 583  LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            L YF+SM K   +  ++EHY C+VDLLGRA +LD A+E I+ MP+    +IW  LL+ C 
Sbjct: 786  LDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACV 845

Query: 643  IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            IH N+E+GE AA+ LLELE E   +Y L+SNIYA + +W      R LMK  GVKK PG 
Sbjct: 846  IHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGR 905

Query: 703  SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
            SW++ K     F+ GD+ HP + +IYE +  L +R   +GYV  +   L++ +  +K  +
Sbjct: 906  SWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPI 965

Query: 763  LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
               HSEKLA+A+G+L+     PIR+ KNLR+C DCH+ I ++S I N  II+RD++RFHH
Sbjct: 966  THVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHH 1025

Query: 823  FKEGSCTCKGYW 834
            F  G C+CK +W
Sbjct: 1026 FDGGVCSCKDFW 1037



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 173/595 (29%), Positives = 291/595 (48%), Gaps = 35/595 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y  H     A+ +      S  SVF WN +I   V  +     F LF +M+  G  
Sbjct: 99  LVDNYFRHGDQHGAVKVFDE--NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 133 PDEYTFPFVLKAC--GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           P+ YTF  VLKAC  G++  +     VH+     GFDS+  V N L+ +Y++   +  A+
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYV-KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 191 QLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           ++F+      IC  DIV+W  +++  +Q+G  E  ++LF  M    ++      L + LS
Sbjct: 216 KVFN-----CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHAS-EIFPTPYVLSSVLS 269

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           A   +  +  G+Q   +     V +     +    N +V  YSR      A  +F  M  
Sbjct: 270 ASTKIQLFELGEQLHCL-----VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNS 324

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +     V+++++I+G  Q+G    AL++F +MQ   L+P+ +T+ SLLS CASVGAL  
Sbjct: 325 RDG----VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G + H + IK  +S       D+++  +L+D+Y+KC  V+ A   F  +  +  ++  W 
Sbjct: 381 GMQLHSHAIKAGMSA------DIILEGSLLDLYSKCADVETAHKFF--LTTETENIVLWN 432

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           VM+ +Y Q    +D+  +F QM Q + ++ PN FT    L  C  L AL  G QIH +V+
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQM-QMEGMI-PNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  +++ + +V + LIDMY++ G +  A  +   L + +VVSWT+++ GY  H +  +A 
Sbjct: 491 KTGFQLNV-YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEAL 549

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F++M   G+  D + F   + AC+    + QG +   + S   G  A       ++ L
Sbjct: 550 QLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISL 608

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
             R  R+ EA    E +  +   I W +L++G       E       R+L  E+E
Sbjct: 609 YARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 243/491 (49%), Gaps = 51/491 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN ++    +L    ++F +F QM   G  P+++T+P +L+ C  L +   G  +H
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  +GF  NV+VC+ L+ MYA+   L+ A ++   + +    D+VSW  ++A Y Q  
Sbjct: 487 THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPED---DVVSWTAMIAGYVQHD 543

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF  M     +Q D +   +A+SACA +    +G+Q      A      + + 
Sbjct: 544 MFSEALQLFEEMEYR-GIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                NA+++ Y+R G  ++A+  F+K+  +    N ++W+++++G AQ G+  EAL VF
Sbjct: 603 -----NALISLYARCGRIQEAYLAFEKIGDK----NNISWNSLVSGLAQSGYFEEALQVF 653

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M     E N+ T  S +S  AS+  +  G++ H   +K        +  +  V N+LI
Sbjct: 654 VRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKT------GYDSEREVSNSLI 707

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-- 456
            +YAK  S+  A   F+ ++ +N  V +W  MI  YSQ+G   +AL LF +M    K+  
Sbjct: 708 SLYAKSGSISDAWREFNDMSERN--VISWNAMITGYSQHGCGMEALRLFEEM----KVCG 761

Query: 457 VKPNAFTLSCALMACARLAALRFGR-------QIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           + PN  T    L AC+ +  ++ G        +IH  V ++++ +       C++D+  R
Sbjct: 762 IMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV-------CVVDLLGR 814

Query: 510 SGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVT 565
           +G +D A      +    + + W +L++   +H    +G++A     ++  E    D  T
Sbjct: 815 AGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE----DSAT 870

Query: 566 FLVL--LYACS 574
           ++++  +YA S
Sbjct: 871 YVLISNIYAVS 881



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
           F +++ V+ N       L  C    +L    ++H  + ++ ++   P + + L+D Y R 
Sbjct: 48  FMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE-PLLIDSLVDNYFRH 106

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           GD   A  VFD    R+V SW  ++  +       +    F +M  EG+ P+G TF  +L
Sbjct: 107 GDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVL 166

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            AC    +    +K   S +  +G  +       ++DL  +   ++ A ++   + M+  
Sbjct: 167 KACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDI 226

Query: 631 PIIWVALLNG 640
            + WVA+++G
Sbjct: 227 -VTWVAMISG 235


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 422/740 (57%), Gaps = 34/740 (4%)

Query: 104  NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS----RCGSSVHA 159
            N LI   V+ +  + A  +F+   R     +  T+  +L A  E  ++    R G  VHA
Sbjct: 348  NGLIAGLVKQQHGEAAAEIFMGA-RDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHA 406

Query: 160  VICSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  +G     + V N L+ MYA+C  +  A ++F  M      D +SWNTI+ A  Q+G
Sbjct: 407  HVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEAR---DRISWNTIITALDQNG 463

Query: 219  DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
              E  +M +  M  +  +     + ++ LS+CA LG  + G+Q         V   + + 
Sbjct: 464  YCEAAMMNYCLMRQN-SIGPSNFAAISGLSSCAGLGLLAAGQQL----HCDAVKWGLYLD 518

Query: 279  DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGHEALDV 337
              VS NA+V  Y   G   + + +F  M   +V    V+W++++   A  +    E++ V
Sbjct: 519  TSVS-NALVKMYGECGRMSECWEIFNSMSAHDV----VSWNSIMGVMASSQAPITESVQV 573

Query: 338  FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            F  M   GL PN VT V+ L+    +  L LGK+ H   +K  ++ D +      V NAL
Sbjct: 574  FSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNA------VDNAL 627

Query: 398  IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
            +  YAK   VD    +F  ++ + RD  +W  MI  Y  NG   +A+     M   ++++
Sbjct: 628  MSCYAKSGDVDSCERLFSRMSGR-RDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMM 686

Query: 458  KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
              +  T S  L ACA +AAL  G ++HA+ LR+  E  +  V + L+DMYS+ G ID A 
Sbjct: 687  --DHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDV-VVESALVDMYSKCGRIDYAS 743

Query: 518  VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             VF ++ Q+N  SW S+++GY  HGLG KA   F++M++ G +PD VTF+ +L ACSH+G
Sbjct: 744  KVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAG 803

Query: 578  MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +V++GL YF+ M +++GI  R EHY+C++DLLGRA  LD+  E ++ MPM+P  +IW  +
Sbjct: 804  LVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTV 862

Query: 638  LNGC---RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            L  C   +  A ++LG  A+  LLELE +   +Y L S  +A  GRW+D A+ R+ MK  
Sbjct: 863  LVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGA 922

Query: 695  GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
             VKK  G SWV   +G  TF  GDR+HP +++IYE L  L+Q+I+  GYVP T + LHD+
Sbjct: 923  AVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDL 982

Query: 755  DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
            ++E K +LL  HSEKLA+A+ +  ++ G PIRI KNLR+CGDCH+A  +IS I+  +IIL
Sbjct: 983  EEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIIL 1042

Query: 815  RDSNRFHHFKEGSCTCKGYW 834
            RDS RFHHFK+G C+C  YW
Sbjct: 1043 RDSIRFHHFKDGKCSCGDYW 1062



 Score =  185 bits (470), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 165/604 (27%), Positives = 281/604 (46%), Gaps = 47/604 (7%)

Query: 56  IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRA 110
           +H +++ + LTH     +HL+ +Y    A    L   +R+    P   +V W   LI   
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSY----AKGARLDAARRVFDGMPGRNAVSW-TCLISGH 141

Query: 111 VRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSSRCGSSV--HAVICSSGF 166
           V   LP++AF LF  M+R G    P  +TF  VL+AC +    R G +V  H ++  + F
Sbjct: 142 VLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEF 201

Query: 167 DSNVFVCNALMAMYARCDTLS--YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
            SN  VCNAL++MY  C       A+++FD      + D+++WN +++ YA+ GDA    
Sbjct: 202 TSNTTVCNALISMYGSCSVGPPILAQRVFD---TTPVRDLITWNALMSVYAKRGDAICTF 258

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC--GMMEEA-KKVFERMKVKDVV 281
            LF  M  D      G+ L        SL T +    C  G++++   +V +     D+ 
Sbjct: 259 TLFRAMQYD----DSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLY 314

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             +A+V+ ++R G  ++A  ++  +++     N VT + +IAG  ++ HG  A ++F   
Sbjct: 315 VGSALVSAFARHGMLDEAKDIYLGLKER----NAVTLNGLIAGLVKQQHGEAAAEIFMGA 370

Query: 342 QFCGLEPNVVTLVSLLSGCASVG----ALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           +      NV T V LLS  A        L  G+E H + ++      G     + V N L
Sbjct: 371 RDSA-AVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRA-----GHIYRKIAVSNGL 424

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ++MYAKC ++D A  +F  +  + RD  +W  +I +  QNG    A+  +  M Q    +
Sbjct: 425 VNMYAKCGAIDKACRVFQLM--EARDRISWNTIITALDQNGYCEAAMMNYCLMRQNS--I 480

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            P+ F     L +CA L  L  G+Q+H   ++     L   V+N L+ MY   G +    
Sbjct: 481 GPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGL-YLDTSVSNALVKMYGECGRMSECW 539

Query: 518 VVFDNLKQRNVVSWTSLM-TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
            +F+++   +VVSW S+M           ++   F  M K GL P+ VTF+  L A +  
Sbjct: 540 EIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPL 599

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
            +++ G K   S+  + G++        ++    ++  +D    L   M      I W +
Sbjct: 600 SVLELG-KQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNS 658

Query: 637 LLNG 640
           +++G
Sbjct: 659 MISG 662



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 200/437 (45%), Gaps = 29/437 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +    + A   +  M +    P  +     L +C  L     G  +H    
Sbjct: 452 WNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAV 511

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS-GDAE 221
             G   +  V NAL+ MY  C  +S   ++F+ M      D+VSWN+I+   A S     
Sbjct: 512 KWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAH---DVVSWNSIMGVMASSQAPIT 568

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + +F+ M     V  + V+ VN L+A   L     GKQ   +     V E   V    
Sbjct: 569 ESVQVFSNMMKSGLVP-NKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVD--- 624

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA+++ Y++ G  +    LF +M   + + + ++W+++I+GY   GH  EA+D    M
Sbjct: 625 --NALMSCYAKSGDVDSCERLFSRM---SGRRDAISWNSMISGYIYNGHLQEAMDCVCLM 679

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
                  +  T   +L+ CASV AL  G E H + ++  L        D++V +AL+DMY
Sbjct: 680 MHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLE------SDVVVESALVDMY 733

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           +KC  +D A  +F +++ KN    +W  MI  Y+++G    AL +F +M  Q+    P+ 
Sbjct: 734 SKCGRIDYASKVFHSMSQKNE--FSWNSMISGYARHGLGRKALEIFEEM--QESGESPDH 789

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVV 519
            T    L AC+    +   R +  + L   Y +L P + +  C+ID+  R+G++D  +  
Sbjct: 790 VTFVSVLSACSHAGLVE--RGLDYFELMEDYGIL-PRIEHYSCVIDLLGRAGELDKIQEY 846

Query: 520 FDNLKQR-NVVSWTSLM 535
              +  + N + W +++
Sbjct: 847 MKRMPMKPNTLIWRTVL 863



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 13/277 (4%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLP-DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           S S   V  WN+++      + P   + ++F  MM+ G  P++ TF   L A   L    
Sbjct: 544 SMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLE 603

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G  +H+V+   G   +  V NALM+ YA+   +    +LF  M   G  D +SWN++++
Sbjct: 604 LGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRM--SGRRDAISWNSMIS 661

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
            Y  +G  +  +     M    ++  D  +    L+ACAS+    RG     ME      
Sbjct: 662 GYIYNGHLQEAMDCVCLMMHSEQMM-DHCTFSIVLNACASVAALERG-----MEMHAFGL 715

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
                 DVV  +A+V  YS+ G  + A  +F  M Q+    N  +W+++I+GYA+ G G 
Sbjct: 716 RSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQK----NEFSWNSMISGYARHGLGR 771

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           +AL++F +MQ  G  P+ VT VS+LS C+  G +  G
Sbjct: 772 KALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERG 808



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   +       A      MM      D  TF  VL AC  + +   G  +HA   
Sbjct: 656 WNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGL 715

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S  +S+V V +AL+ MY++C  + YA ++F  M Q    +  SWN++++ YA+ G    
Sbjct: 716 RSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQK---NEFSWNSMISGYARHGLGRK 772

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M  +     D V+ V+ LSAC+  G   RG     + E   +  R++      
Sbjct: 773 ALEIFEEMQ-ESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIE-----H 826

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           ++ ++    R G  +      K+M    +K N + W  V+    Q  H
Sbjct: 827 YSCVIDLLGRAGELDKIQEYMKRM---PMKPNTLIWRTVLVACQQSKH 871


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/632 (39%), Positives = 366/632 (57%), Gaps = 36/632 (5%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+VS N  +A++ ++ D E    +F +M+    V  +  ++++  +  A           
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWN--TMLSGYTKVA----------- 118

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++EA ++F+++   D VS+N M+  Y R    + A A F KM  +++     +W+ +I
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDI----ASWNTLI 174

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G+AQ G   +A D+F  M     E N V+  +++SG    G L   +E +     + + 
Sbjct: 175 SGFAQNGQMQKAFDLFSVMP----EKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVV 230

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V+           A++  Y K   V++A  +F  +A KN  + TW  MI  Y +N  A D
Sbjct: 231 VE----------TAMLTGYMKFGKVELAERIFQRMAVKN--LVTWNSMIAGYVENCRAED 278

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
            L +F  M +    V+PN  +LS  L+ C+ L+AL  GRQ+H  V ++            
Sbjct: 279 GLKVFKTMIESR--VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT-ACTS 335

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LI MY + GD+D+A  +F  + +++V++W ++++GY  HG G KA   FD+MR   + PD
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TF+ ++ AC+H+G VD G++YF SM KEFGI A+  HY C++DLLGRA RLDEAV LI
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLI 455

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + MP  P   I+  LL  CRIH N++L E AA  LL L+      Y  L+NIYA   +W 
Sbjct: 456 KEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWD 515

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
            VA++R +MK   V K PG SW++ K  T  F   DR HP+   I++ L  L  ++K  G
Sbjct: 516 QVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAG 575

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP   FALHDV++E K  LL  HSEKLA+A+G++ TAPGTPIR+ KNLR+CGDCH AI 
Sbjct: 576 YVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIK 635

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           FIS I   EII+RD+ RFHHF+ G C+C  YW
Sbjct: 636 FISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 10/234 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  Y+       A  + QR++    ++  WN++I   V     ++  ++F  M+     
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAVK--NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVR 292

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  +   VL  C  L +   G  +H ++  S    +   C +L++MY +C  L  A +L
Sbjct: 293 PNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKL 352

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F EM +    D+++WN +++ YAQ G     L LF +M     ++ D ++ V  + AC  
Sbjct: 353 FLEMPRK---DVITWNAMISGYAQHGAGRKALHLFDKMRNGT-MKPDWITFVAVILACNH 408

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
            G    G Q    +  KK F  ++ K  V +  ++    R G  ++A +L K+M
Sbjct: 409 AGFVDLGVQ--YFKSMKKEFG-IEAKP-VHYTCVIDLLGRAGRLDEAVSLIKEM 458


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 408/712 (57%), Gaps = 28/712 (3%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+  G   +  TF  VL +  +  + R G  +H+ +  S    +VFV  AL+  Y +C +
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 186 LSYARQLFDEMFQPGICDIV-SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
           L+ AR++FD M  P  C  V +WN++++AY+ S  +     +F RM  + + + D V+ +
Sbjct: 61  LTDARKVFDGM--P--CRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGE-RCDRVTFL 115

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           + L AC +      GK        + + E     D+    A++T Y+R  S E+A  +F 
Sbjct: 116 SILDACVNPENLQHGKHV-----RESISETSFELDLFVGTALITMYARCRSPENAAQVFG 170

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M+Q+N+    +TWSA+I  +A  GH  EAL  FR MQ  G+ PN VT +SLL+G  +  
Sbjct: 171 RMKQKNL----ITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPS 226

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNR 422
            L      H      +L  +    D   + NAL+++Y +C++  +DVA V+   +    +
Sbjct: 227 GLEELSRIH------LLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEM--DEQ 278

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
            +  W V+I  Y+ +G + +AL  + ++  Q + +  +  T    L AC    +L  G+ 
Sbjct: 279 QITAWNVLINGYTLHGRSREALETYQRL--QLEAIPVDKVTFISVLNACTSSTSLAEGKM 336

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           IH+  +    +  +  V N L +MYS+ G ++ AR +FD++  R+ VSW  ++  Y  HG
Sbjct: 337 IHSNAVECGLDSDV-IVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHG 395

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
             ++      +M +EG+  +G+TF+ +L +CSH+G++ +G +YF S+  + GI  + EHY
Sbjct: 396 ESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHY 455

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
            C+VDLLGRA +L EA + I  MP EP  + W +LL  CR+H +++ G+LAA +LLEL+ 
Sbjct: 456 GCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDP 515

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
               +  +LSNIY+  G WK+ A++R  M    VKK PG S +Q K     F V D +HP
Sbjct: 516 GNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHP 575

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           ++ +IY+ +  L   ++  GYVP T   LHDVD+E+K  LL  HSEKLA+A+G+++T   
Sbjct: 576 RAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEK 635

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + + I KNLR+C DCH+A  FIS I   EI++RD++RFHHF++GSC+CK YW
Sbjct: 636 SSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 212/458 (46%), Gaps = 32/458 (6%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  WN++I           AF +F +M   G   D  TF  +L AC    + + G  V 
Sbjct: 75  SVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVR 134

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  + F+ ++FV  AL+ MYARC +   A Q+F  M Q    ++++W+ I+ A+A  G
Sbjct: 135 ESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK---NLITWSAIITAFADHG 191

Query: 219 DAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
                L  F  M   G +  +   +SL+N  +  + L   SR            +     
Sbjct: 192 HCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR---------IHLLITEHG 242

Query: 277 VKDVVSW-NAMVTGYSR--IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           + D  +  NA+V  Y R   G  + A  + ++M ++     +  W+ +I GY   G   E
Sbjct: 243 LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQ----QITAWNVLINGYTLHGRSRE 298

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           AL+ ++++Q   +  + VT +S+L+ C S  +L  GK  H   ++  L        D++V
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD------SDVIV 352

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NAL +MY+KC S++ AR +FD++    R   +W  M+ +Y+Q+G + + L L  +M Q+
Sbjct: 353 KNALTNMYSKCGSMENARRIFDSMPI--RSAVSWNGMLQAYAQHGESEEVLKLIRKMEQE 410

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              VK N  T    L +C+    +  G Q    +  ++   +      CL+D+  R+G +
Sbjct: 411 G--VKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKL 468

Query: 514 DTARVVFDNL-KQRNVVSWTSLMTGYGMHGLGDKAHWA 550
             A      +  +  +V+W SL+    +H   D+   A
Sbjct: 469 QEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLA 506


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 289/886 (32%), Positives = 451/886 (50%), Gaps = 112/886 (12%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           L    +L ++  IH  +I   L  +      LI  Y     P+ +LS+ +R+SP+  +V+
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK-NVY 72

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            WN++IR   +  L   A   + ++      PD+YTFP V+KAC  L  +  G  V+  I
Sbjct: 73  LWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQI 132

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              GF+S++FV NAL+ MY+R   L+ ARQ+FDEM    + D+VSWN++++ Y+  G  E
Sbjct: 133 LDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEM---PVRDLVSWNSLISGYSSHGYYE 189

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------- 260
             L ++  +     V  D  ++ + L A  +L    +G+                     
Sbjct: 190 EALEIYHELKNSWIVP-DSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248

Query: 261 -----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                +     +A++VF+ M V+D VS+N M+ GY ++   E++  +F +   +  K ++
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDL 307

Query: 316 VTWSAVI---------------------AG--------------YAQRGHGHEALDVFRQ 340
           +T S+V+                     AG              YA+ G    A DVF  
Sbjct: 308 LTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNS 367

Query: 341 MQ-------------------------------FCGLEPNVVTLVSLLSGCASVGALLLG 369
           M+                                   + + +T + L+S    +  L  G
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFG 427

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           K  H   IK  + +      DL V NALIDMYAKC  V  +  +F ++     D  TW  
Sbjct: 428 KGLHSNGIKSGICI------DLSVSNALIDMYAKCGEVGDSLKIFSSMG--TGDTVTWNT 479

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I +  + G     L +  QM + +  V P+  T    L  CA LAA R G++IH  +LR
Sbjct: 480 VISACVRFGDFATGLQVTTQMRKSE--VVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
             YE  +  + N LI+MYS+ G ++ +  VF+ + +R+VV+WT ++  YGM+G G+KA  
Sbjct: 538 FGYESELQ-IGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALE 596

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            F  M K G+ PD V F+ ++YACSHSG+VD+GL  F+ M   + I    EHYAC+VDLL
Sbjct: 597 TFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLL 656

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
            R+ ++ +A E I+ MP++P   IW ++L  CR   ++E  E  + R++EL  +  G   
Sbjct: 657 SRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSI 716

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           L SN YA   +W  V+ IR  +K   + K PG SW++  +    F  GD + PQS+ IY+
Sbjct: 717 LASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYK 776

Query: 730 ILAGLVQRIKAMGYVPQTSFALHDV-DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
            L  L   +   GY+P       ++ ++EEK  L+  HSE+LA+A+G+L T PGTP+++ 
Sbjct: 777 SLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVM 836

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CGDCH     IS I+  EI++RD+NRFH FK+G+C+CK  W
Sbjct: 837 KNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/670 (38%), Positives = 375/670 (55%), Gaps = 74/670 (11%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           ++NV   N L+A Y RC  +  A ++F++M    +   V+WN+I+AA+A+    + G   
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDM---KVKSTVTWNSILAAFAK----KPGHFE 90

Query: 227 FARMTGDVKVQGDGVSLVNALSACA--SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN 284
           +AR   +   Q + VS  N + AC    LG          + +A+  F+ M +KDV SWN
Sbjct: 91  YARQLFEKIPQPNTVSY-NIMLACHWHHLG----------VHDARGFFDSMPLKDVASWN 139

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
            M++  +++G   +A  LF  M ++N     V+WSA+++GY   G    A++ F    + 
Sbjct: 140 TMISALAQVGLMGEARRLFSAMPEKNC----VSWSAMVSGYVACGDLDAAVECF----YA 191

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
               +V+T  ++++G                                         Y K 
Sbjct: 192 APMRSVITWTAMITG-----------------------------------------YMKF 210

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             V++A  +F  ++   R + TW  MI  Y +NG A D L LF  M +    VKPNA +L
Sbjct: 211 GRVELAERLFQEMS--MRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETG--VKPNALSL 266

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           +  L+ C+ L+AL+ G+Q+H  V +             L+ MYS+ GD+  A  +F  + 
Sbjct: 267 TSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTT-AGTSLVSMYSKCGDLKDAWELFIQIP 325

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +++VV W ++++GY  HG G KA   FD+M+KEGL PD +TF+ +L AC+H+G+VD G++
Sbjct: 326 RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQ 385

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YF++M ++FGI  + EHYAC+VDLLGRA +L EAV+LI+ MP +P P I+  LL  CRIH
Sbjct: 386 YFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIH 445

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N+ L E AA  LLEL+      Y  L+N+YA   RW  VA IR  MK   V K PG SW
Sbjct: 446 KNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSW 505

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           ++       F   DR HP+   I+E L  L +++K  GYVP   F LHDV +E K  LL 
Sbjct: 506 IEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLL 565

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLA+A+G+L    G PIR+ KNLR+CGDCHSA  +IS I   EII+RD+ RFHHFK
Sbjct: 566 WHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFK 625

Query: 825 EGSCTCKGYW 834
           +G C+C+ YW
Sbjct: 626 DGFCSCRDYW 635



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 121/285 (42%), Gaps = 25/285 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y+       A  L Q +S    ++  WNA+I   V     ++  RLF  M+  G  
Sbjct: 203 MITGYMKFGRVELAERLFQEMSMR--TLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVK 260

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  +   VL  C  L + + G  VH ++C     S+     +L++MY++C  L  A +L
Sbjct: 261 PNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWEL 320

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F ++ +    D+V WN +++ YAQ G  +  L LF  M  +  ++ D ++ V  L AC  
Sbjct: 321 FIQIPRK---DVVCWNAMISGYAQHGAGKKALRLFDEMKKE-GLKPDWITFVAVLLAC-- 374

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMR 307
                     G+++   + F  M+    +      +  MV    R G   +A  L K M 
Sbjct: 375 -------NHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM- 426

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
               K +   +  ++   A R H +  L  F       L+P + T
Sbjct: 427 --PFKPHPAIYGTLLG--ACRIHKNLNLAEFAAKNLLELDPTIAT 467


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/886 (32%), Positives = 447/886 (50%), Gaps = 139/886 (15%)

Query: 38  KITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSH------LIAAYVSHNAPSPALSLLQ 91
           +I +++LR C      +   +QI  + +T    S       LI  Y  +   S A  + +
Sbjct: 164 RIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFE 223

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
            +     SV W  A+I    +    + A  LF Q+              VL AC ++   
Sbjct: 224 NLKARD-SVSWV-AMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFF 267

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G  +H ++   GF S  +VCNAL+ +Y+R   LS A Q+F  M Q    D VS+N+++
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR---DRVSYNSLI 324

Query: 212 AAYAQSGDAEGGLMLFAR----------------------------------------MT 231
           +  AQ G     L LF +                                        MT
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMT 384

Query: 232 GDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKK---VFERMKVKDVV------ 281
            D+ V+G   SL++    C+ + T      C G ++   K   +F +M+++ +V      
Sbjct: 385 SDIVVEG---SLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTY 441

Query: 282 ----------------------------SWNAMVTG-----YSRIGSFEDAFALFKKMRQ 308
                                        +N  V+      Y++ G  + A  +F+++++
Sbjct: 442 PSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE 501

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +V    V+W+A+IAGY Q     EAL++F++MQ  G++ + +   S +S CA + AL  
Sbjct: 502 NDV----VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQ 557

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G++ H        S    + DDL + NAL+ +YA+C  V  A   FD I  K  D  +W 
Sbjct: 558 GRQIH------AQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAK--DNVSWN 609

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            ++  ++Q+G   +AL +F QM +    ++ N+FT   A+ A A +A +R G+QIH  + 
Sbjct: 610 SLVSGFAQSGYFEEALNIFAQMNKAG--LEINSFTFGSAVSAAANIANVRIGKQIHGMIR 667

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  Y+     V+N LI +Y++ G ID              +SW S++TGY  HG G +A 
Sbjct: 668 KTGYDSETE-VSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFEAL 713

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F+ M++  + P+ VTF+ +L ACSH G+VD+G+ YF SMS+   +  + EHYAC+VDL
Sbjct: 714 KLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDL 773

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGR+  L  A   +E MP++P  ++W  LL+ C +H N+++GE AA+ LLELE +   +Y
Sbjct: 774 LGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATY 833

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            L+SN+YA +G+W    R R +MK  GVKK PG SWV+       FF GD+ HP++  IY
Sbjct: 834 VLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIY 893

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           E L GL  R    GYVP+ +  L D +  +K      HSE+LA+A+G+L+    TP+ + 
Sbjct: 894 EYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVF 953

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCH+ I  +S I +  II+RDS RFHHFK GSC+CK YW
Sbjct: 954 KNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 162/539 (30%), Positives = 265/539 (49%), Gaps = 56/539 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSVHAVI 161
           WN +    +  RL      LF +M+ +    DE  F  VL+ C G   S R    +HA  
Sbjct: 131 WNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKT 190

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            +SGF+S+ F+CN L+ +Y +   LS A+++F+ +      D VSW  +++  +Q+G  E
Sbjct: 191 ITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR---DSVSWVAMISGLSQNGYEE 247

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             ++LF ++                LSAC  +  +  GKQ   +     V ++    +  
Sbjct: 248 EAMLLFCQIV---------------LSACTKVEFFEFGKQLHGL-----VLKQGFSSETY 287

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA+VT YSR G+   A  +F  M Q +     V+++++I+G AQ+G+ + AL +F++M
Sbjct: 288 VCNALVTLYSRSGNLSSAEQIFHCMSQRDR----VSYNSLISGLAQQGYINRALALFKKM 343

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
                +P+ VT+ SLLS CASVGAL  GK+ H Y IK  ++       D++V  +L+D+Y
Sbjct: 344 NLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMT------SDIVVEGSLLDLY 397

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC  +  A   F                   Y Q    N +  +F QM  Q + + PN 
Sbjct: 398 VKCSDIKTAHEFFLC-----------------YGQLDNLNKSFQIFTQM--QIEGIVPNQ 438

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           FT    L  C  L A   G QIH  VL+  ++  + +V++ LIDMY++ G +D A  +F 
Sbjct: 439 FTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNV-YVSSVLIDMYAKHGKLDHALKIFR 497

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            LK+ +VVSWT+++ GY  H    +A   F +M+ +G+  D + F   + AC+    +DQ
Sbjct: 498 RLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQ 557

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           G +   + S   G S        +V L  R  ++ EA    + +  +   + W +L++G
Sbjct: 558 G-RQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN-VSWNSLVSG 614



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LID Y   GD++ A  VFD +  R++  W  +   +    L  +    F +M  + +  D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
              F V+L  CS + +  + ++   + +   G  +       ++DL  +   L  A ++ 
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 623 EGMPMEPTPIIWVALLNG 640
           E +    + + WVA+++G
Sbjct: 223 ENLKARDS-VSWVAMISG 239


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/556 (42%), Positives = 345/556 (62%), Gaps = 16/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V  N ++  Y++ GS E+A  +F KM + +     VTW+ +I+GY+Q     +AL +F
Sbjct: 85  DLVMNNTLLNMYAKCGSLEEARKVFDKMPERDF----VTWTTLISGYSQHDRPFDALVLF 140

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM   G  PN  TL S++   A+      G + H + +K           ++ V +AL+
Sbjct: 141 NQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK------CGFDSNVHVGSALL 194

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D+Y +   +D A+++FDA+  +N DV +W  +I  +++  G   AL LF  M ++    +
Sbjct: 195 DLYTRYGLMDDAQLVFDALESRN-DV-SWNALIAGHARRCGTEKALELFQGMLREG--FR 250

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F+ +    AC+    L  G+ +HAY++++  E L+ F  N L+DMY++SG I  AR 
Sbjct: 251 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG-EKLVAFAGNTLLDMYAKSGSIHDARK 309

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD L +R+VVSW SL+T Y  HG G++A   F++MR+ G+ P+ ++FL +L ACSHSG+
Sbjct: 310 IFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGL 369

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D+G  Y++ M K+ GI   A HY  IVDLLGRA  L+ A+  IE MP+EPT  IW ALL
Sbjct: 370 LDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           N CR+H N ELG  AA  + EL+ +  G + +L NIYA+ GRW D AR+R  MK +GVKK
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P CSWV+ +     F   D  HPQ ++I      ++ +IK +GYVP TS  +  VD +E
Sbjct: 489 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 548

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEK+ALA+ +L T PG+ I I KN+R+CGDCHSAI   S  +  EII+RD+N
Sbjct: 549 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTN 608

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G+C+CK YW
Sbjct: 609 RFHHFKDGACSCKDYW 624



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 209/475 (44%), Gaps = 87/475 (18%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D   +  +LK C        G  VH  +  S F  ++ + N L+ MYA+C +L  AR++F
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D+M +    D V+W T+++ Y+Q       L+LF +M        +  +L + + A A+ 
Sbjct: 110 DKMPER---DFVTWTTLISGYSQHDRPFDALVLFNQML-RFGFSPNEFTLSSVIKAAAAE 165

Query: 254 GTWSRGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMV 287
                G Q                           G+M++A+ VF+ ++ ++ VSWNA++
Sbjct: 166 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 225

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
            G++R    E A  LF+ M +E                                   G  
Sbjct: 226 AGHARRCGTEKALELFQGMLRE-----------------------------------GFR 250

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIK---RVLSVDGSHPDDLMVINALIDMYAKC 404
           P+  +  SL   C+S G L  GK  H Y IK   ++++  G         N L+DMYAK 
Sbjct: 251 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG---------NTLLDMYAKS 301

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            S+  AR +FD +A   RDV +W  ++ +Y+Q+G  N+A+  F +M +    ++PN  + 
Sbjct: 302 GSIHDARKIFDRLA--KRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGG--IRPNEISF 357

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTA-RVVFDN 522
              L AC+    L  G   H Y L  +  +++  +    ++D+  R+GD++ A R + + 
Sbjct: 358 LSVLTACSHSGLLDEG--WHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEM 415

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             +     W +L+    MH   +   +A + + +  L PD     V+LY    SG
Sbjct: 416 PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFE--LDPDDPGPHVILYNIYASG 468



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 165/354 (46%), Gaps = 40/354 (11%)

Query: 38  KITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQR 92
           +  + LL++C   K LTQ  ++H  +I     H  V  + L+  Y    +   A  +  +
Sbjct: 52  RFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDK 111

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           +    F    W  LI    +   P +A  LF QM+R G+ P+E+T   V+KA        
Sbjct: 112 MPERDFVT--WTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC 169

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           CG  +H      GFDSNV V +AL+ +Y R   +  A+ +FD +      + VSWN ++A
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR---NDVSWNALIA 226

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------ 260
            +A+    E  L LF  M  +   +    S  +   AC+S G   +GK            
Sbjct: 227 GHARRCGTEKALELFQGMLRE-GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 285

Query: 261 --------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                         + G + +A+K+F+R+  +DVVSWN+++T Y++ G   +A   F++M
Sbjct: 286 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEM 345

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG--LEP-NVVTLVSLL 357
           R+  ++ N +++ +V+   +  G   E    +  M+  G  LE  + VT+V LL
Sbjct: 346 RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLL 399


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/693 (36%), Positives = 396/693 (57%), Gaps = 45/693 (6%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD-AEGGLMLF 227
           N+F  NAL++  A    LS    LF  M Q    DIVS+N ++A ++  G  A+   +  
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQR---DIVSYNAVIAGFSGGGSHAQAVRVYL 127

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMME------------------- 266
           A +  D  V+   +++   + A ++LG  + GKQ  C ++                    
Sbjct: 128 ALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAK 187

Query: 267 -----EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
                +AK+ F+ +  K+VV +N M+TG  R    E+A  LF+ M   +     +TW+ +
Sbjct: 188 MSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDS----ITWTTM 243

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           + G+ Q G   EAL++FR+M+F G+  +  T  S+L+ C ++ AL  GK+ H Y I+   
Sbjct: 244 VTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT-- 301

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
                + D++ V +AL+DMY+KC+S+ +A  +F  +  KN  + +WT +I  Y QNG + 
Sbjct: 302 ----RYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN--IISWTALIVGYGQNGCSE 355

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A+ +F +M Q+D  + P+ +TL   + +CA LA+L  G Q H   L +     I  V+N
Sbjct: 356 EAVRVFSEM-QRDG-IDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYIT-VSN 412

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L+ +Y + G I+ A  +FD +   + VSWT+L++GY   G   +    F++M  +G+ P
Sbjct: 413 ALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKP 472

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           DGVTF+ +L ACS +G V++G  YF SM K+ GI    +HY C++DL  R+ +L EA E 
Sbjct: 473 DGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEF 532

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           I+ MPM P  I W  LL+ CR+  ++E+G+ AA  LLE++ +   SY LL +++A  G+W
Sbjct: 533 IKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQW 592

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
            +VA++R  M+   VKK PGCSW++ K     F   D++HP S+ IYE L  L  ++   
Sbjct: 593 NEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEE 652

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GY P  S  LHDV D +K  ++  HSEKLA+A+G++      PIRI KNLR+C DCH+A 
Sbjct: 653 GYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNAT 712

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            FIS I   +I++RD+ RFH F +G C+C  +W
Sbjct: 713 KFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 141/590 (23%), Positives = 238/590 (40%), Gaps = 146/590 (24%)

Query: 60  IIVQNLTHVPPS----HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           +I++ L H PP+    HL+ AY      + A  +   + P P ++F +NAL+      RL
Sbjct: 30  VILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFDAM-PHP-NLFTYNALLSTLAHARL 87

Query: 116 PDNAFRLFLQMMRR---------------GWH------------------PDEYTFPFVL 142
             +   LF  M +R               G H                  P   T   ++
Sbjct: 88  LSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMV 147

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
            A   L     G   H  I   GF +N FV + L+ MYA+   +  A++ FDE+    + 
Sbjct: 148 MAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVV 207

Query: 203 ----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
                                       D ++W T+V  + Q+G     L +F RM    
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM---- 263

Query: 235 KVQG---DGVSLVNALSACASLGTWSRGKQ--------------------------CGMM 265
           + QG   D  +  + L+AC +L    +GKQ                          C  +
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSI 323

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
           + A+ VF RM  K+++SW A++ GY + G  E+A  +F +M+++                
Sbjct: 324 KLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD---------------- 367

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
                              G++P+  TL S++S CA++ +L  G + HC  +   L    
Sbjct: 368 -------------------GIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLM--- 405

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
                + V NAL+ +Y KC S++ A  +FD ++    D  +WT ++  Y+Q G A + + 
Sbjct: 406 ---HYITVSNALVTLYGKCGSIEDAHRLFDEMS--FHDQVSWTALVSGYAQFGRAKETID 460

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           LF +M    K VKP+  T    L AC+R   +  GR     + ++   + I     C+ID
Sbjct: 461 LFEKMLA--KGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 506 MYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           +YSRSG +  A      +    + + W +L++   + G  +   WA + +
Sbjct: 519 LYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENL 568



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 196/399 (49%), Gaps = 49/399 (12%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++    +  L   A  +F +M  +G   D+YTF  +L ACG L +   G  +HA I 
Sbjct: 240 WTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYII 299

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
            + +D NVFV +AL+ MY++C ++  A  +F  M     C +I+SW  ++  Y Q+G +E
Sbjct: 300 RTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM----TCKNIISWTALIVGYGQNGCSE 355

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + +F+ M  D  +  D  +L + +S+CA+L +   G Q   +     +   + V    
Sbjct: 356 EAVRVFSEMQRD-GIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS--- 411

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA+VT Y + GS EDA  LF +M       + V+W+A+++GYAQ G   E +D+F +M
Sbjct: 412 --NALVTLYGKCGSIEDAHRLFDEMSFH----DQVSWTALVSGYAQFGRAKETIDLFEKM 465

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR---VLSVDGSHPDDLMVINALI 398
              G++P+ VT + +LS C+  G +  G+ ++ +++++   ++ +D  +         +I
Sbjct: 466 LAKGVKPDGVTFIGVLSACSRAGFVEKGR-SYFHSMQKDHGIVPIDDHY-------TCMI 517

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-------GANDALALFPQMF 451
           D+Y++   +  A      + P + D   W  ++ +    G        A + L + PQ  
Sbjct: 518 DLYSRSGKLKEAEEFIKQM-PMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQ-- 574

Query: 452 QQDKLVKPNAFTLSCALMACA----RLAALRFG---RQI 483
                  P ++ L C++ A       +A LR G   RQ+
Sbjct: 575 ------NPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQV 607


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/644 (39%), Positives = 385/644 (59%), Gaps = 36/644 (5%)

Query: 203  DIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
            ++ SWN+++A  A+ GD+   L  F+  R  G +  +    S    + +C++L     G+
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS---SFPCTIKSCSALCDLVSGR 1162

Query: 261  QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
               M  +   VF      D+   +A++  YS+ G  +DA ALF ++   NV    V+W++
Sbjct: 1163 ---MSHQQAFVFGFET--DLFVSSALIDMYSKCGQLKDARALFDEIPLRNV----VSWTS 1213

Query: 321  VIAGYAQRGHGHEALDVFRQMQFCGLEPNV----------VTLVSLLSGCASVGALLLGK 370
            +I GY Q      AL +F+   F   E  V          V +VS+LS C+ V    + +
Sbjct: 1214 MITGYVQNEQADNALLLFKD--FLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 1271

Query: 371  ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
              H + +K+    DGS    + V N L+D YAKC    V++ +FD +  + +D  +W  M
Sbjct: 1272 GVHGFVVKK--GFDGS----IGVGNTLMDAYAKCGQPLVSKKVFDWM--EEKDDISWNSM 1323

Query: 431  IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
            I  Y+Q+G + +AL +F  M +    V+ NA TLS  L+ACA   ALR G+ IH  V++ 
Sbjct: 1324 IAVYAQSGLSGEALEVFHGMVRHVG-VRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382

Query: 491  QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
              E  +  V   +IDMY + G ++ A+  FD +K++NV SWT+++ GYGMHG   +A   
Sbjct: 1383 DLEYNV-CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDI 1441

Query: 551  FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
            F +M + G+ P+ +TF+ +L ACSH+G+V++G  +F++M  ++ I    EHY C+VDL G
Sbjct: 1442 FYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFG 1501

Query: 611  RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
            RA  L+EA  LI+ M M+P  ++W +LL  CRIH NV+LGE+AA +L EL+ +  G Y L
Sbjct: 1502 RAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVL 1561

Query: 671  LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
            LSN+YA+AGRW DV R+R LMK+  + K PG S V+ K     F VGD+ HP  + IY+ 
Sbjct: 1562 LSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKY 1621

Query: 731  LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
            L  L   ++ +GYVP  +  LHDVD+EEK  +L  HSEKLA+A+G++ +APGT I I KN
Sbjct: 1622 LEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKN 1681

Query: 791  LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            LR+CGDCH+ I  IS +++ + ++RDS RFHHFK+G C+C  YW
Sbjct: 1682 LRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 175/362 (48%), Gaps = 46/362 (12%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YS  G    A  LF +++         TW+ +I      G   +AL +++ M   G+  +
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCT----FTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK---- 405
             T   ++  C +  ++ LGK  H   IK   S       D+ V N LID Y KC     
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS------GDVFVQNNLIDFYFKCGHTRF 178

Query: 406 ---------------------------SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                                       +  AR +FD I  KN  V +WT MI  Y +N 
Sbjct: 179 ALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKN--VVSWTAMINGYIRNQ 236

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +AL LF +M  Q + + PN +T+   + AC  +  L  GR IH Y ++N  E+ + +
Sbjct: 237 QPEEALELFKRM--QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGV-Y 293

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           +   LIDMYS+ G I  A  VF+ + ++++ +W S++T  G+HGLG +A   F +M +  
Sbjct: 294 LGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVN 353

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + PD +TF+ +L AC H   V +G  YF  M++ +GI+   EHY C+ +L  R+N LDEA
Sbjct: 354 VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413

Query: 619 VE 620
            +
Sbjct: 414 FK 415



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 215/478 (44%), Gaps = 99/478 (20%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRI-SPSPF 98
            LL+ CK+   +  IH +II   L++  +    LI  Y +H   + A+ L  +I +P  F
Sbjct: 32  FLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF 91

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +   WN +IR      L + A  L+  M+ +G   D++TFPFV+KAC    S   G  VH
Sbjct: 92  T---WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   GF  +VFV N L+  Y +C    +A ++F++M    + ++VSW T+++     G
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM---RVRNVVSWTTVISGLISCG 205

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           D                                             ++EA+++F+ +  K
Sbjct: 206 D---------------------------------------------LQEARRIFDEIPSK 220

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +VVSW AM+ GY R    E+A  LFK+M+ EN+  N  T                     
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYT--------------------- 259

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
                         +VSL+  C  +G L LG+  H Y IK  + +       + +  ALI
Sbjct: 260 --------------MVSLIKACTEMGILTLGRGIHDYAIKNCIEI------GVYLGTALI 299

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY+KC S+  A  +F+ +  K+  + TW  MI S   +G   +AL LF +M + +  VK
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKS--LPTWNSMITSLGVHGLGQEALNLFSEMERVN--VK 355

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           P+A T    L AC  +  ++ G      + ++     IP    C+ ++Y+RS ++D A
Sbjct: 356 PDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 145/512 (28%), Positives = 227/512 (44%), Gaps = 95/512 (18%)

Query: 99   SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
            +V  WN++I    R      A R F  + + G  P   +FP  +K+C  L     G   H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165

Query: 159  AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                  GF++++FV +AL+ MY++C  L  AR LFDE+    + ++VSW +++  Y Q+ 
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI---PLRNVVSWTSMITGYVQNE 1222

Query: 219  DAEGGLMLFAR-MTGDVKVQG------DGVSLVNALSACASL------------------ 253
             A+  L+LF   +  + +V+       D V +V+ LSAC+ +                  
Sbjct: 1223 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 1282

Query: 254  -GTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
             G+   G        +CG    +KKVF+ M+ KD +SWN+M+  Y++ G   +A  +F  
Sbjct: 1283 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 1342

Query: 306  M-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            M R   V+ N VT SAV                                   L  CA  G
Sbjct: 1343 MVRHVGVRYNAVTLSAV-----------------------------------LLACAHAG 1367

Query: 365  ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            AL  GK  H   IK  L        ++ V  ++IDMY KC  V++A+  FD +  KN  V
Sbjct: 1368 ALRAGKCIHDQVIKMDLEY------NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKN--V 1419

Query: 425  ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----F 479
             +WT M+  Y  +G A +AL +F +M +    VKPN  T    L AC+    +      F
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKMVRAG--VKPNYITFVSVLAACSHAGLVEEGWHWF 1477

Query: 480  GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGY 538
                H Y +    E        C++D++ R+G ++ A  +   +K + + V W SL+   
Sbjct: 1478 NAMKHKYDIEPGIEHY-----GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 1532

Query: 539  GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
             +H   D    A  ++ +  L PD   + VLL
Sbjct: 1533 RIHKNVDLGEIAAQKLFE--LDPDNCGYYVLL 1562



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 173/348 (49%), Gaps = 26/348 (7%)

Query: 312  KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            K NV +W++VIA  A+ G   EAL  F  ++  GL P   +    +  C+++  L+ G+ 
Sbjct: 1104 KSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRM 1163

Query: 372  THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            +H      V   +     DL V +ALIDMY+KC  +  AR +FD I  +N  V +WT MI
Sbjct: 1164 SHQQAF--VFGFE----TDLFVSSALIDMYSKCGQLKDARALFDEIPLRN--VVSWTSMI 1215

Query: 432  GSYSQNGGANDALALFPQMFQQDKLVKP------NAFTLSCALMACARLAALRFGRQIHA 485
              Y QN  A++AL LF    +++  V+       ++  +   L AC+R++       +H 
Sbjct: 1216 TGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHG 1275

Query: 486  YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            +V++  ++  I  V N L+D Y++ G    ++ VFD +++++ +SW S++  Y   GL  
Sbjct: 1276 FVVKKGFDGSIG-VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 546  KAHWAFDQM-RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            +A   F  M R  G+  + VT   +L AC+H+G +  G    D +     I    E+  C
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-----IKMDLEYNVC 1389

Query: 605  ----IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
                I+D+  +  R++ A +  + M  E     W A++ G  +H   +
Sbjct: 1390 VGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAK 1436



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 150/340 (44%), Gaps = 56/340 (16%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL  C +   L   ++ H   I+  LS      +D ++   LI +Y+    +  A ++F 
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLS------NDQLLTRKLIHLYSTHGRIAYAILLFY 83

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            I  +N    TW ++I + + NG +  AL L+  M  Q   +  + FT    + AC    
Sbjct: 84  QI--QNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG--IAADKFTFPFVIKACTNFL 139

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG------------------------ 511
           ++  G+ +H  +++  +   + FV N LID Y + G                        
Sbjct: 140 SIDLGKVVHGSLIKYGFSGDV-FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVI 198

Query: 512 -------DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
                  D+  AR +FD +  +NVVSWT+++ GY  +   ++A   F +M+ E + P+  
Sbjct: 199 SGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEY 258

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSK---EFGISARAEHYACIVDLLGRANRLDEAVEL 621
           T + L+ AC+  G++  G    D   K   E G+         ++D+  +   + +A+E+
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGT----ALIDMYSKCGSIKDAIEV 314

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
            E MP +  P  W +++    +H    LG+ A N   E+E
Sbjct: 315 FETMPRKSLP-TWNSMITSLGVHG---LGQEALNLFSEME 350


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/720 (37%), Positives = 405/720 (56%), Gaps = 28/720 (3%)

Query: 117  DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
            + A  LF ++   G   +++    VLK    + +      VHA  C  G D N FV +AL
Sbjct: 513  EEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSAL 572

Query: 177  MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
            +  Y+ C  +S AR++FD +      D V+W  +V+ Y+++   E  L +F++M   V  
Sbjct: 573  IDAYSMCGVVSDARRVFDGIVGK---DAVAWTAMVSCYSENDCPENTLQIFSKMRVAVS- 628

Query: 237  QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
            + +  +L + L A   L +   GK  G+   + K     +      + A++  Y++ G+ 
Sbjct: 629  KLNPFALTSVLRAAVCLSSVVLGK--GIHACSVKTLYDTERH---VYGALLDMYAKCGNI 683

Query: 297  EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
            EDA   F+ +  ++V L    WS +I+ YAQ     +A ++F +M    + PN  +L S+
Sbjct: 684  EDARLAFEMVTNDDVIL----WSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSV 739

Query: 357  LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
            L  CA++  L LGK+ H + IK        H  +L V NALID+YAKC  ++ +  +F +
Sbjct: 740  LQACANMPLLDLGKQIHNHAIKI------GHESELFVGNALIDLYAKCSDMESSLEIFSS 793

Query: 417  IAPKNRDV--ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
            +    RDV   +W  +I  YS++G    AL++F +M  +   V     T S  L ACA  
Sbjct: 794  L----RDVNEVSWNTIIVGYSKSGFGEAALSVFREM--RAASVPSTQVTYSSVLRACAST 847

Query: 475  AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            A++    Q+H  + ++ +      V+N LID Y++ G I  AR +F+ LK+ ++VSW ++
Sbjct: 848  ASINHVGQVHCLIEKSTFNSDT-IVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAI 906

Query: 535  MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
            ++GY +HG    A   FD M K  +  + +TF+ LL  C  +G+V QGL  FDSM  + G
Sbjct: 907  ISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHG 966

Query: 595  ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
            I    EHY CIV LLGRA RL++A+  I  +P  P+ ++W ALL+ C +H NVELG  +A
Sbjct: 967  IEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSA 1026

Query: 655  NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
             ++LE+E + + +Y LLSN+Y+ AG    VA  R  M++ GV+K PG SWV+ K     F
Sbjct: 1027 EKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAF 1086

Query: 715  FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
             VG   HP  + I  +L  L  +    GYVP T   LHD+++E+K  +L+ HSE+LALAY
Sbjct: 1087 SVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAY 1146

Query: 775  GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            G++ T PG PIRI KNLR C DCH+    IS I+  EII+RD NRFHHF+EG+C+C  YW
Sbjct: 1147 GLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/545 (25%), Positives = 249/545 (45%), Gaps = 78/545 (14%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS--NVFVCNALMAMYARCDTLSYARQ 191
           D Y +  +L+ C     +R G +VH  +  SG  +  ++F  N L+ MY +      A +
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD--------------VKVQ 237
           +FD + +    ++VS+ T+V  +A  G+ E    LF R+  +              + V 
Sbjct: 487 VFDGLPER---NMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVA 543

Query: 238 GDGVSLVNALSACASLGTWSRG-----------KQCGMMEEAKKVFERMKVKDVVSWNAM 286
            D + L   + ACA      R              CG++ +A++VF+ +  KD V+W AM
Sbjct: 544 MDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAM 603

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           V+ YS     E+   +F KMR    KL                                 
Sbjct: 604 VSCYSENDCPENTLQIFSKMRVAVSKL--------------------------------- 630

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
             N   L S+L     + +++LGK  H  ++K +   +        V  AL+DMYAKC +
Sbjct: 631 --NPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERH------VYGALLDMYAKCGN 682

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ AR+ F+ +   N DV  W++MI  Y+Q      A  LF +M +    V PN F+LS 
Sbjct: 683 IEDARLAFEMVT--NDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS--VSPNEFSLSS 738

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L ACA +  L  G+QIH + ++  +E  + FV N LID+Y++  D++++  +F +L+  
Sbjct: 739 VLQACANMPLLDLGKQIHNHAIKIGHESEL-FVGNALIDLYAKCSDMESSLEIFSSLRDV 797

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           N VSW +++ GY   G G+ A   F +MR   +    VT+  +L AC+ +  ++  +   
Sbjct: 798 NEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINH-VGQV 856

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
             + ++   ++       ++D   +   + +A E+ E +  E   + W A+++G  +H  
Sbjct: 857 HCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETL-KECDLVSWNAIISGYAVHGQ 915

Query: 647 VELGE 651
             + +
Sbjct: 916 AAMAQ 920



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 78/481 (16%)

Query: 100  VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
            V  W+ +I R  +    + AF LF++MMR    P+E++   VL+AC  +P    G  +H 
Sbjct: 698  VILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHN 757

Query: 160  VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                 G +S +FV NAL+ +YA+C  +  + ++F  +      + VSWNTI+  Y++SG 
Sbjct: 758  HAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRD---VNEVSWNTIIVGYSKSGF 814

Query: 220  AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
             E  L +F  M     V    V+  + L ACAS  + +   Q   + E K  F      D
Sbjct: 815  GEAALSVFREMRA-ASVPSTQVTYSSVLRACASTASINHVGQVHCLIE-KSTFN----SD 868

Query: 280  VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
             +  N+++  Y++ G   DA  +F+ +++     ++V+W+A+I+GYA  G    A ++F 
Sbjct: 869  TIVSNSLIDSYAKCGCIRDAREIFETLKE----CDLVSWNAIISGYAVHGQAAMAQELFD 924

Query: 340  QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
             M    ++ N +T V+LLS C S G +  G           LS+  S   D         
Sbjct: 925  MMSKNSIKANDITFVALLSVCGSTGLVSQG-----------LSLFDSMRLD--------- 964

Query: 400  MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
                             I P    +  +T ++    + G  NDAL      F  D    P
Sbjct: 965  ---------------HGIEPS---MEHYTCIVRLLGRAGRLNDALN-----FIGDIPSAP 1001

Query: 460  NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            +A      L +C     +  GR     VL  + +    +V   L +MYS +G +D  +V 
Sbjct: 1002 SAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYV--LLSNMYSAAGSLD--QVA 1057

Query: 520  FDNLKQRNV-------VSWTSLMTGYGMHGLGDKAH-----------WAFDQMRKEGLAP 561
            F     RN+       +SW  +        +G + H           W   +  +EG  P
Sbjct: 1058 FFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVP 1117

Query: 562  D 562
            D
Sbjct: 1118 D 1118


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/644 (39%), Positives = 384/644 (59%), Gaps = 36/644 (5%)

Query: 203  DIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
            ++ SWN+++A  A+ GD+   L  F+  R  G +  +    S    + +C++L     G+
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS---SFPCTIKSCSALCDLVSGR 2035

Query: 261  QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
               M  +   VF      D+   +A++  YS+ G  +DA ALF ++   NV    V+W++
Sbjct: 2036 ---MSHQQAFVFGFET--DLFVSSALIDMYSKCGQLKDARALFDEIPLRNV----VSWTS 2086

Query: 321  VIAGYAQRGHGHEALDVFRQMQFCGLEPNV----------VTLVSLLSGCASVGALLLGK 370
            +I GY Q      AL +F+   F   E  V          V +VS+LS C+ V    + +
Sbjct: 2087 MITGYVQNEQADNALLLFKD--FLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 2144

Query: 371  ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
              H + +K+    DGS    + V N L+D YAKC    V++ +FD +  K  D  +W  M
Sbjct: 2145 GVHGFVVKK--GFDGS----IGVGNTLMDAYAKCGQPLVSKKVFDWMEEK--DDISWNSM 2196

Query: 431  IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
            I  Y+Q+G + +AL +F  M +    V+ NA TLS  L+ACA   ALR G+ IH  V++ 
Sbjct: 2197 IAVYAQSGLSGEALEVFHGMVRHVG-VRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255

Query: 491  QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
              E  +  V   +IDMY + G ++ A+  FD +K++NV SWT+++ GYGMHG   +A   
Sbjct: 2256 DLEYNV-CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDI 2314

Query: 551  FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
            F +M + G+ P+ +TF+ +L ACSH+G+V++G  +F++M  ++ I    EHY C+VDL G
Sbjct: 2315 FYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFG 2374

Query: 611  RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
            RA  L+EA  LI+ M M+P  ++W +LL  CRIH NV+LGE+AA +L EL+ +  G Y L
Sbjct: 2375 RAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVL 2434

Query: 671  LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
            LSN+YA+AGRW DV R+R LMK+  + K PG S V+ K     F VGD+ HP  + IY+ 
Sbjct: 2435 LSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKY 2494

Query: 731  LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
            L  L   ++ +GYVP  +  LHDVD+EEK  +L  HSEKLA+A+G++ +APGT I I KN
Sbjct: 2495 LEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKN 2554

Query: 791  LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            LR+CGDCH+ I  IS +++ + ++RDS RFHHFK+G C+C  YW
Sbjct: 2555 LRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 175/362 (48%), Gaps = 46/362 (12%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YS  G    A  LF +++         TW+ +I      G   +AL +++ M   G+  +
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCT----FTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK---- 405
             T   ++  C +  ++ LGK  H   IK   S       D+ V N LID Y KC     
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS------GDVFVQNNLIDFYFKCGHTRF 178

Query: 406 ---------------------------SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                                       +  AR +FD I  KN  V +WT MI  Y +N 
Sbjct: 179 ALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKN--VVSWTAMINGYIRNQ 236

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +AL LF +M  Q + + PN +T+   + AC  +  L  GR IH Y ++N  E+ + +
Sbjct: 237 QPEEALELFKRM--QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGV-Y 293

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           +   LIDMYS+ G I  A  VF+ + ++++ +W S++T  G+HGLG +A   F +M +  
Sbjct: 294 LGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVN 353

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + PD +TF+ +L AC H   V +G  YF  M++ +GI+   EHY C+ +L  R+N LDEA
Sbjct: 354 VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413

Query: 619 VE 620
            +
Sbjct: 414 FK 415



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 235/510 (46%), Gaps = 91/510 (17%)

Query: 99   SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
            +V  WN++I    R      A R F  + + G  P   +FP  +K+C  L     G   H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 159  AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                  GF++++FV +AL+ MY++C  L  AR LFDE+    + ++VSW +++  Y Q+ 
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI---PLRNVVSWTSMITGYVQNE 2095

Query: 219  DAEGGLMLFAR-MTGDVKVQG------DGVSLVNALSACASL------------------ 253
             A+  L+LF   +  + +V+       D V +V+ LSAC+ +                  
Sbjct: 2096 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 2155

Query: 254  -GTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
             G+   G        +CG    +KKVF+ M+ KD +SWN+M+  Y++ G   +A  +F  
Sbjct: 2156 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 2215

Query: 306  M-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            M R   V+ N VT SAV                                   L  CA  G
Sbjct: 2216 MVRHVGVRYNAVTLSAV-----------------------------------LLACAHAG 2240

Query: 365  ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            AL  GK  H   IK  L        ++ V  ++IDMY KC  V++A+  FD +  KN  V
Sbjct: 2241 ALRAGKCIHDQVIKMDLEY------NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKN--V 2292

Query: 425  ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             +WT M+  Y  +G A +AL +F +M +    VKPN  T    L AC+    +  G   H
Sbjct: 2293 KSWTAMVAGYGMHGRAKEALDIFYKMVRAG--VKPNYITFVSVLAACSHAGLVEEG--WH 2348

Query: 485  AY-VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGM 540
             +  ++++Y+ + P + +  C++D++ R+G ++ A  +   +K + + V W SL+    +
Sbjct: 2349 WFNAMKHKYD-IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRI 2407

Query: 541  HGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            H   D    A  ++ +  L PD   + VLL
Sbjct: 2408 HKNVDLGEIAAQKLFE--LDPDNCGYYVLL 2435



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 197/403 (48%), Gaps = 47/403 (11%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           F+L+ C      R    +HA I  SG  ++  +   L+ +Y+    ++YA  LF ++  P
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
             C   +WN I+ A   +G +E  LML+  M     +  D  +    + AC +  +   G
Sbjct: 89  --CTF-TWNLIIRANTINGLSEQALMLYKNMVCQ-GIAADKFTFPFVIKACTNFLSIDLG 144

Query: 260 K--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           K                          +CG    A KVFE+M+V++VVSW  +++G    
Sbjct: 145 KVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISC 204

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  ++A  +F ++  +NV    V+W+A+I GY +     EAL++F++MQ   + PN  T+
Sbjct: 205 GDLQEARRIFDEIPSKNV----VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           VSL+  C  +G L LG+  H Y IK  + +       + +  ALIDMY+KC S+  A  +
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCIEI------GVYLGTALIDMYSKCGSIKDAIEV 314

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +  K+  + TW  MI S   +G   +AL LF +M + +  VKP+A T    L AC  
Sbjct: 315 FETMPRKS--LPTWNSMITSLGVHGLGQEALNLFSEMERVN--VKPDAITFIGVLCACVH 370

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +  ++ G      + ++     IP    C+ ++Y+RS ++D A
Sbjct: 371 IKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 172/345 (49%), Gaps = 26/345 (7%)

Query: 312  KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            K NV +W++VIA  A+ G   EAL  F  ++  GL P   +    +  C+++  L+ G+ 
Sbjct: 1977 KSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRM 2036

Query: 372  THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            +H      V   +     DL V +ALIDMY+KC  +  AR +FD I  +N  V +WT MI
Sbjct: 2037 SHQQAF--VFGFE----TDLFVSSALIDMYSKCGQLKDARALFDEIPLRN--VVSWTSMI 2088

Query: 432  GSYSQNGGANDALALFPQMFQQDKLVKP------NAFTLSCALMACARLAALRFGRQIHA 485
              Y QN  A++AL LF    +++  V+       ++  +   L AC+R++       +H 
Sbjct: 2089 TGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHG 2148

Query: 486  YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            +V++  ++  I  V N L+D Y++ G    ++ VFD +++++ +SW S++  Y   GL  
Sbjct: 2149 FVVKKGFDGSIG-VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 546  KAHWAFDQM-RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            +A   F  M R  G+  + VT   +L AC+H+G +  G    D +     I    E+  C
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-----IKMDLEYNVC 2262

Query: 605  ----IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
                I+D+  +  R++ A +  + M  E     W A++ G  +H 
Sbjct: 2263 VGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHG 2306



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 185/400 (46%), Gaps = 49/400 (12%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRI-SPSPF 98
            LL+ CK+   +  IH +II   L++  +    LI  Y +H   + A+ L  +I +P  F
Sbjct: 32  FLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF 91

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +   WN +IR      L + A  L+  M+ +G   D++TFPFV+KAC    S   G  VH
Sbjct: 92  T---WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC---------------- 202
             +   GF  +VFV N L+  Y +C    +A ++F++M    +                 
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 203 ------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
                       ++VSW  ++  Y ++   E  L LF RM  +  +  +  ++V+ + AC
Sbjct: 209 EARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE-NIFPNEYTMVSLIKAC 267

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
             +G  + G+  G+ + A K    +    V    A++  YS+ GS +DA  +F+ M +++
Sbjct: 268 TEMGILTLGR--GIHDYAIKNCIEI---GVYLGTALIDMYSKCGSIKDAIEVFETMPRKS 322

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           +     TW+++I      G G EAL++F +M+   ++P+ +T + +L  C  +  +  G 
Sbjct: 323 LP----TWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG- 377

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
              C    R+    G  P        + ++YA+  ++D A
Sbjct: 378 ---CAYFTRMTQHYGIAPIPEHY-ECMTELYARSNNLDEA 413



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 150/340 (44%), Gaps = 56/340 (16%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL  C +   L   ++ H   I+  LS      +D ++   LI +Y+    +  A ++F 
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLS------NDQLLTRKLIHLYSTHGRIAYAILLFY 83

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            I  +N    TW ++I + + NG +  AL L+  M  Q   +  + FT    + AC    
Sbjct: 84  QI--QNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG--IAADKFTFPFVIKACTNFL 139

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG------------------------ 511
           ++  G+ +H  +++  +   + FV N LID Y + G                        
Sbjct: 140 SIDLGKVVHGSLIKYGFSGDV-FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVI 198

Query: 512 -------DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
                  D+  AR +FD +  +NVVSWT+++ GY  +   ++A   F +M+ E + P+  
Sbjct: 199 SGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEY 258

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSK---EFGISARAEHYACIVDLLGRANRLDEAVEL 621
           T + L+ AC+  G++  G    D   K   E G+         ++D+  +   + +A+E+
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGT----ALIDMYSKCGSIKDAIEV 314

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
            E MP +  P  W +++    +H    LG+ A N   E+E
Sbjct: 315 FETMPRKSLP-TWNSMITSLGVHG---LGQEALNLFSEME 350


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 276/756 (36%), Positives = 414/756 (54%), Gaps = 59/756 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC-GSSVHAVI 161
           WN++I  A R    + A  LF  M+     P  +T   V  AC  L +    G  VHA +
Sbjct: 154 WNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFV 213

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +G D   F  NAL+ MYA+   +  A+ LFD +F     D+VSWNTI+++ +Q+   E
Sbjct: 214 LRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFD-VFDDK--DLVSWNTIISSLSQNDRFE 269

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L L+  +     V+ +GV+L + L AC+ L     GK+      A  +     +++  
Sbjct: 270 EAL-LYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEI----HAFVLMNNDLIENSF 324

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
              A+V  Y      E    +F  M     +  +  W+A+IAGY +    +EA+++F +M
Sbjct: 325 VGCALVDMYCNCKQPEKGRLVFDGM----FRRTIAVWNAMIAGYVRNEFDYEAIELFVEM 380

Query: 342 QF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
            F  GL PN VTL S+L  C    + L  +  H   +K           D  V NAL+DM
Sbjct: 381 VFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVK------WGFEKDKYVQNALMDM 434

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM---------- 450
           Y++   +++AR +F ++    +D+ +W  MI  Y   G  +DAL L   M          
Sbjct: 435 YSRMGRIEIARSIFGSM--NRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRIN 492

Query: 451 ----FQQDK--LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
               ++ +K   +KPN+ TL   L  CA LAAL  G++IHAY ++      +  V + L+
Sbjct: 493 TFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVA-VGSALV 551

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-----L 559
           DMY++ G ++ +R VF+ +  RNV++W  L+  YGMHG G++A   F +M +EG     +
Sbjct: 552 DMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREI 611

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ VT++ +  + SHSGMVD+GL  F +M  + GI   ++HYAC+VDLLGR+ +++EA 
Sbjct: 612 RPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAY 671

Query: 620 ELIEGMPMEPTPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            LI+ MP     +  W +LL  C+IH N+E+GE+AA  L          + L  N+    
Sbjct: 672 NLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNL----------FVLDPNVLDYG 721

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
            +   + R    MK  GV+K PGCSW++  +    F  GD +HPQS++++E L  L  R+
Sbjct: 722 TKQSMLGR---KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRM 778

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  GYVP TS  LH+V +EEK  +L  HSE+LA+A+G+L T+PGT IR+ KNLR+C DCH
Sbjct: 779 KKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCH 838

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            A  FIS I++ EIILRD  RFHHF+ G+C+C  YW
Sbjct: 839 VATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 162/574 (28%), Positives = 263/574 (45%), Gaps = 47/574 (8%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A   +  M+  G  PD + FP VLKA   +     G  +HA +   G      V N+L+ 
Sbjct: 69  AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVN 128

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY +C  +  AR++FDE+      D VSWN+++ A  +  + E  + LF  M  +  V  
Sbjct: 129 MYGKCGDIDAARRVFDEITNR---DDVSWNSMINAACRFEEWELAVHLFRLMLLE-NVGP 184

Query: 239 DGVSLVNALSACASL-GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
              +LV+   AC++L      GKQ            R       + NA+VT Y+++G   
Sbjct: 185 TSFTLVSVAHACSNLINGLLLGKQ------VHAFVLRNGDWRTFTNNALVTMYAKLGRVY 238

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           +A  LF     +    ++V+W+ +I+  +Q     EAL     M   G+ PN VTL S+L
Sbjct: 239 EAKTLFDVFDDK----DLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVL 294

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C+ +  L  GKE H + +     ++ S      V  AL+DMY  CK  +  R++FD +
Sbjct: 295 PACSHLEMLGCGKEIHAFVLMNNDLIENS-----FVGCALVDMYCNCKQPEKGRLVFDGM 349

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               R +A W  MI  Y +N    +A+ LF +M  +  L  PN+ TLS  L AC R  + 
Sbjct: 350 F--RRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGL-SPNSVTLSSVLPACVRCESF 406

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
                IH+ V++  +E    +V N L+DMYSR G I+ AR +F ++ ++++VSW +++TG
Sbjct: 407 LDKEGIHSCVVKWGFEK-DKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITG 465

Query: 538 YGMHGLGDKA-HWAFDQMRKEG-----------------LAPDGVTFLVLLYACSHSGMV 579
           Y + G  D A +   D  R +                  L P+ VT + +L  C+    +
Sbjct: 466 YVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAAL 525

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +G +      K+  +S      + +VD+  +   L+ +  + E M +    I W  L+ 
Sbjct: 526 GKGKEIHAYAVKQM-LSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNV-ITWNVLIM 583

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
              +H     GE A      +  E D +  +  N
Sbjct: 584 AYGMHGK---GEEALKLFRRMVEEGDNNREIRPN 614



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 21/334 (6%)

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
           H+A+  +  M   G+ P+     ++L   A +  L LGK+ H +  K   ++  + P   
Sbjct: 67  HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVP--- 123

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
              N+L++MY KC  +D AR +FD I   NRD  +W  MI +  +      A+ LF  M 
Sbjct: 124 ---NSLVNMYGKCGDIDAARRVFDEIT--NRDDVSWNSMINAACRFEEWELAVHLFRLML 178

Query: 452 QQDKLVKPNAFTLSCALMACARL-AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
            ++  V P +FTL     AC+ L   L  G+Q+HA+VLRN       F  N L+ MY++ 
Sbjct: 179 LEN--VGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGD--WRTFTNNALVTMYAKL 234

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G +  A+ +FD    +++VSW ++++    +   ++A      M + G+ P+GVT   +L
Sbjct: 235 GRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVL 294

Query: 571 YACSHSGMVDQG--LKYFDSMSKEFGISARAEHYAC-IVDLLGRANRLDEAVELIEGMPM 627
            ACSH  M+  G  +  F  M+ +           C +VD+     + ++   + +GM  
Sbjct: 295 PACSHLEMLGCGKEIHAFVLMNNDL---IENSFVGCALVDMYCNCKQPEKGRLVFDGM-F 350

Query: 628 EPTPIIWVALLNG-CRIHANVELGELAANRLLEL 660
             T  +W A++ G  R   + E  EL    + EL
Sbjct: 351 RRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFEL 384



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 4/160 (2%)

Query: 417 IAPKNRDVATWTVMIGSYSQNGGA-NDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
           +A + R  + W   + S +Q+    + A++ +  M      V P+ F     L A A + 
Sbjct: 42  VAAEPRLPSEWVSHLRSQTQSSSTFHQAISTYTNMVTAG--VPPDNFAFPAVLKATAGIQ 99

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            L  G+Q+HA+V +   + L   V N L++MY + GDID AR VFD +  R+ VSW S++
Sbjct: 100 DLNLGKQLHAHVFKFG-QALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMI 158

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
                    + A   F  M  E + P   T + + +ACS+
Sbjct: 159 NAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSN 198


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/605 (40%), Positives = 345/605 (57%), Gaps = 42/605 (6%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G    A+ VF+RM  K+VV W+A++ GYS  G  E A+ L ++MR   V+ NV+TW+ ++
Sbjct: 66  GATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLV 125

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G  + G   +A+    +M   G  P+   +   LS    V  + +GK+ H Y +K    
Sbjct: 126 SGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCR 185

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVD-VARVMFDA-----------IAPKNRD------- 423
           +D        V+ ALIDMY KC   D + RV  ++           +A  +R+       
Sbjct: 186 LDAC------VVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEAL 239

Query: 424 --------------VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
                         V +WT ++    QNG   +A+ LF  M  Q   V+PN+ T+ C L 
Sbjct: 240 LLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTM--QSIGVEPNSVTIPCVLP 297

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           A A +AAL  GR  H + LR  +   + +V + L+DMY++ G    AR +FD +  RNVV
Sbjct: 298 AFANVAALMHGRSAHCFSLRKGFLHDV-YVGSALVDMYAKCGKARHARTIFDAMPSRNVV 356

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW +++ GY MHG    A   F  M+K    PD VTF  +L ACS +G+ ++G +YF+ M
Sbjct: 357 SWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM 416

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
            +  GIS R EHYAC+V LLGR+ +LDEA +LI  MP EP   IW +LL  CR++ NV L
Sbjct: 417 QQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLL 476

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            E+AA +L +LE    G+Y LLSNIYA+   W  V R+R  MK+ G+KK  GCSW++ K 
Sbjct: 477 AEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKN 536

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
                  GD +HP    I E L  L   +  +G+ P   F LHDV+++EK ++L  HSEK
Sbjct: 537 KVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEK 596

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A G+++T PGTP+R+ KNLRICGDCH A+ FIS     EI +RD+NRFHHFK+G C+
Sbjct: 597 LAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCS 656

Query: 830 CKGYW 834
           C  YW
Sbjct: 657 CGDYW 661



 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 221/473 (46%), Gaps = 81/473 (17%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD +  P  LK+C   P +R   ++HA    SG   + FV ++L+  Y R      AR +
Sbjct: 18  PDPHLLPSALKSCPAQPLAR---ALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM---------------------- 230
           FD M +    ++V W+ ++A Y+  GDAE    L  +M                      
Sbjct: 75  FDRMPEK---NVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRS 131

Query: 231 -------TGDVKVQGDG-----VSLVNALSACASLGTWSRGKQ----------------- 261
                  T  V++  +G       +  ALSA   +   S GKQ                 
Sbjct: 132 GRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVV 191

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG  +E  +VF      DV S NA+V G SR     +A  LF++     V+
Sbjct: 192 TALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVE 251

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           LNVV+W++++A   Q G   EA+D+FR MQ  G+EPN VT+  +L   A+V AL+ G+  
Sbjct: 252 LNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSA 311

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HC+++++          D+ V +AL+DMYAKC     AR +FDA+   +R+V +W  MIG
Sbjct: 312 HCFSLRK------GFLHDVYVGSALVDMYAKCGKARHARTIFDAM--PSRNVVSWNAMIG 363

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+ +G A +A+ LF  M  Q    KP+  T +C L AC++      GR+   +    Q 
Sbjct: 364 GYAMHGDAANAVQLFCSM--QKCKQKPDLVTFTCVLGACSQAGLTEEGRRY--FNEMQQG 419

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
             + P + +  C++ +  RSG +D A  + + +  + +   W SL+    ++G
Sbjct: 420 HGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYG 472



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 136/334 (40%), Gaps = 44/334 (13%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
           S LIA Y +      A  LL+++  +    +V  WN L+    R     +A    ++M  
Sbjct: 87  SALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHS 146

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            G+ PD       L A G++     G  VH  +  +G   +  V  AL+ MY +C     
Sbjct: 147 EGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADE 206

Query: 189 ARQLFDE---------------------------MFQPGIC-----DIVSWNTIVAAYAQ 216
             ++F E                           +F+  IC     ++VSW +IVA   Q
Sbjct: 207 IVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQ 266

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +G     + LF R    + V+ + V++   L A A++     G+        K       
Sbjct: 267 NGRDLEAVDLF-RTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLH--- 322

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV   +A+V  Y++ G    A  +F  M   NV    V+W+A+I GYA  G    A+ 
Sbjct: 323 --DVYVGSALVDMYAKCGKARHARTIFDAMPSRNV----VSWNAMIGGYAMHGDAANAVQ 376

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           +F  MQ C  +P++VT   +L  C+  G    G+
Sbjct: 377 LFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGR 410



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 18/217 (8%)

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V  W +++   V+      A  LF  M   G  P+  T P VL A   + +   G S 
Sbjct: 252 LNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSA 311

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H      GF  +V+V +AL+ MYA+C    +AR +FD M      ++VSWN ++  YA  
Sbjct: 312 HCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR---NVVSWNAMIGGYAMH 368

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           GDA   + LF  M    K + D V+    L AC+         Q G+ EE ++ F  M+ 
Sbjct: 369 GDAANAVQLFCSMQ-KCKQKPDLVTFTCVLGACS---------QAGLTEEGRRYFNEMQQ 418

Query: 278 KDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQE 309
              +S     +  MVT   R G  ++A+ L  +M  E
Sbjct: 419 GHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFE 455



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 5/152 (3%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+   L  AL +C    A    R +HA  + +      PFVA+ L+  Y R G    AR 
Sbjct: 18  PDPHLLPSALKSCP---AQPLARALHAAAVVSGLAE-DPFVASSLLHSYIRLGATGAARS 73

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD + ++NVV W++L+ GY   G  + A    +QMR  G+ P+ +T+  L+   + SG 
Sbjct: 74  VFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGR 133

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
               +     M  E G    A   +C +  +G
Sbjct: 134 ALDAVTALVRMHSE-GFFPDATGVSCALSAVG 164


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 380/660 (57%), Gaps = 35/660 (5%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           ++  Y R + L  A  LFDEM    + D+VSWN++++   + GD    + LF  M     
Sbjct: 72  MITGYTRSNRLVDALNLFDEM---PVRDVVSWNSMISGCVECGDMNTAVKLFDEMP---- 124

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
            +   VS    ++ C          + G +++A+++F +M VKD  +WN+MV GY + G 
Sbjct: 125 -ERSVVSWTAMVNGCF---------RSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGK 174

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            +DA  LFK+M  +NV    ++W+ +I G  Q     EALD+F+ M  C ++        
Sbjct: 175 VDDALKLFKQMPGKNV----ISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTC 230

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           +++ CA+  A  +G + H   IK     +        V  +LI  YA CK +  +R +FD
Sbjct: 231 VITACANAPAFHMGIQVHGLIIKLGFLYEE------YVSASLITFYANCKRIGDSRKVFD 284

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
                +  VA WT ++  YS N    DAL++F  M +   L  PN  T +  L +C+ L 
Sbjct: 285 EKV--HEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSIL--PNQSTFASGLNSCSALG 340

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            L +G+++H   ++   E    FV N L+ MYS SG+++ A  VF  + ++++VSW S++
Sbjct: 341 TLDWGKEMHGVAVKLGLET-DAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSII 399

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG- 594
            G   HG G  A   F QM +    PD +TF  LL ACSH G +++G K F  MS     
Sbjct: 400 VGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINH 459

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I  + +HY C+VD+LGR  +L EA ELIE M ++P  ++W+ALL+ CR+H++V+ GE AA
Sbjct: 460 IDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAA 519

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
             +  L+S+   +Y LLSNIYA+AGRW +V+++R  MK  G+ K+PG SWV  +     F
Sbjct: 520 AAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEF 579

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
           F GD+  P   +IYE L  L +++K +GY P    ALHDV+DE+K ++L+ HSE+LA+A+
Sbjct: 580 FSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAF 637

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G++ T  G+ + + KNLR+C DCH+ I  IS ++  EI+LRD  RFHHFK G+C+C  YW
Sbjct: 638 GLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 189/401 (47%), Gaps = 25/401 (6%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           ++EA++VF ++    V  +  M+TGY+R     DA  LF +M       +VV+W+++I+G
Sbjct: 51  IDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVR----DVVSWNSMISG 106

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
             + G  + A+ +F +M     E +VV+  ++++GC   G +    E   Y +       
Sbjct: 107 CVECGDMNTAVKLFDEMP----ERSVVSWTAMVNGCFRSGKVDQA-ERLFYQMP------ 155

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                D    N+++  Y +   VD A  +F  +  KN  V +WT MI    QN  + +AL
Sbjct: 156 ---VKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKN--VISWTTMICGLDQNERSGEAL 210

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF  M +    +K  +   +C + ACA   A   G Q+H  +++  + +   +V+  LI
Sbjct: 211 DLFKNMLRC--CIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGF-LYEEYVSASLI 267

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
             Y+    I  +R VFD      V  WT+L++GY ++   + A   F  M +  + P+  
Sbjct: 268 TFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQS 327

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF   L +CS  G +D G K    ++ + G+   A     +V +   +  +++AV +   
Sbjct: 328 TFASGLNSCSALGTLDWG-KEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIK 386

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           +  + + + W +++ GC  H   +   +   +++ L  E D
Sbjct: 387 I-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPD 426



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 162/362 (44%), Gaps = 22/362 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  Y+       AL L +++     +V  W  +I    +      A  LF  M+R    
Sbjct: 165 MVHGYLQFGKVDDALKLFKQMPGK--NVISWTTMICGLDQNERSGEALDLFKNMLRCCIK 222

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
                F  V+ AC   P+   G  VH +I   GF    +V  +L+  YA C  +  +R++
Sbjct: 223 STSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKV 282

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDE        +  W  +++ Y+ +   E  L +F+ M  +  +  +  +  + L++C++
Sbjct: 283 FDEKVHE---QVAVWTALLSGYSLNKKHEDALSIFSGMLRN-SILPNQSTFASGLNSCSA 338

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           LGT   GK      E   V  ++ ++ D    N++V  YS  G+  DA ++F K+     
Sbjct: 339 LGTLDWGK------EMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI----F 388

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K ++V+W+++I G AQ G G  A  +F QM     EP+ +T   LLS C+  G L  G++
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRK 448

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
              Y    +  +D      +     ++D+  +C  +  A  + + +  K  ++  W  ++
Sbjct: 449 LFYYMSSGINHID----RKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEM-VWLALL 503

Query: 432 GS 433
            +
Sbjct: 504 SA 505



 Score = 47.0 bits (110), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           R  A      IH    R+ + + + F     LI  +  S  ID AR VF+ +   +V  +
Sbjct: 11  RFRAFSISHVIHGKCYRS-FSVTVEFQNREVLICNHLLSRRIDEAREVFNQVPSPHVSLY 69

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           T ++TGY        A   FD+M       D V++  ++  C   G ++  +K FD M +
Sbjct: 70  TKMITGYTRSNRLVDALNLFDEMP----VRDVVSWNSMISGCVECGDMNTAVKLFDEMPE 125

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              +S  A    C      R+ ++D+A  L   MP++ T   W ++++G
Sbjct: 126 RSVVSWTAMVNGCF-----RSGKVDQAERLFYQMPVKDTA-AWNSMVHG 168


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/764 (34%), Positives = 425/764 (55%), Gaps = 29/764 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y+     S A +L   +     +   W  LI    +      AF LF++M R G  
Sbjct: 138 MIMGYIKSGNLSEARTLFDSMFQR--TAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGID 195

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD  +   +L    E  S      VH+ +   G+DS + V N+L+  Y +  +L  A QL
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F+++ +    D V++N ++  Y++ G     + LF +M  +V  +    +    L+A   
Sbjct: 256 FNDIPER---DSVTFNALLTGYSKEGFNREAINLFFKMQ-EVGYRPTEFTFAAILTAGIQ 311

Query: 253 LGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           L     G+Q  G + +   V+      +V   NA++  YS+     +A  LF +M +   
Sbjct: 312 LDDIEFGQQVHGFVVKCNFVW------NVFVANALLDFYSKHDRVVEASKLFYEMPE--- 362

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            ++ ++++ ++  YA  G   E+L++F+++QF G +       +LLS  A    L +G++
Sbjct: 363 -VDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQ 421

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H  TI            +++V N+L+DMYAKC     A  +F  +A ++     WT MI
Sbjct: 422 IHSQTIVT------DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSS--VPWTAMI 473

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            SY Q G   D L LF +M  Q   +  +A T +  + ACA LA+L  G+Q+H++++ + 
Sbjct: 474 SSYVQKGLHEDGLKLFVEM--QRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSG 531

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           Y   + F  + L+DMY++ G I  A  +F  +  RN VSW +L++ Y  +G GD     F
Sbjct: 532 YISNV-FSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLF 590

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           ++M + GL PD V+ L +L ACSH G+V++GL+YFDSM++ + +  + EHYA  +D+L R
Sbjct: 591 EEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCR 650

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS-YTL 670
             R DEA +L+  MP EP  I+W ++LN C IH N EL + AAN+L  ++  +D + Y  
Sbjct: 651 GGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVT 710

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           +SNIYA AG W +V +++  M+  GVKK P  SWV+ K  T  F   D+THPQ ++I + 
Sbjct: 711 MSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKK 770

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L +++   GY P +S ALH+VD+E K + L  HSE++A+A+ +++T  G+PI + KN
Sbjct: 771 LDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKN 830

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR C DCH+AI  IS I+  EI +RDS+RFHHF++G CTC+ YW
Sbjct: 831 LRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 227/514 (44%), Gaps = 55/514 (10%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI------------ 204
           V A I  +GF+ N +  N L+  + +   L+ AR+LFDEM    I               
Sbjct: 88  VDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGN 147

Query: 205 ----------------VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
                           V+W  ++  YAQ+        LF  M G   +  D VSL   LS
Sbjct: 148 LSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEM-GRHGIDPDHVSLATLLS 206

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                 + +  +Q         V +      +V  N+++  Y +  S   AF LF  + +
Sbjct: 207 GFTEFDSVNEVRQV-----HSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPE 261

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                + VT++A++ GY++ G   EA+++F +MQ  G  P   T  ++L+    +  +  
Sbjct: 262 R----DSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEF 317

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G++ H + +K       +   ++ V NAL+D Y+K   V  A  +F  +     D  ++ 
Sbjct: 318 GQQVHGFVVK------CNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP--EVDGISYN 369

Query: 429 VMIGSYSQNGGANDALALFP--QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           V++  Y+ NG   ++L LF   Q    D+   P A  LS A ++      L  GRQIH+ 
Sbjct: 370 VLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISL----NLDIGRQIHSQ 425

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
            +       I  V N L+DMY++ G+   A  +F +L  ++ V WT++++ Y   GL + 
Sbjct: 426 TIVTDAISEI-LVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHED 484

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
               F +M++  +  D  T+  ++ AC+    +  G K   S     G  +     + +V
Sbjct: 485 GLKLFVEMQRAKIGADAATYASIVRACASLASLTLG-KQLHSHIIGSGYISNVFSGSALV 543

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           D+  +   + +A+++ + MP+  + + W AL++ 
Sbjct: 544 DMYAKCGSIKDALQMFQEMPVRNS-VSWNALISA 576



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 40/252 (15%)

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           KN  +  WT +I     N G   +      +   + ++KP      C       L A + 
Sbjct: 31  KNDSIKVWTCVICLIFTNAGHFGSKQYELTLSLMNNIIKP------CTRNLVTTLTAPKP 84

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA----------------------- 516
              + A +++  +     + +N L+  + + GD++ A                       
Sbjct: 85  HLHVDASIIKTGFNP-NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYI 143

Query: 517 --------RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
                   R +FD++ QR  V+WT L+ GY  +    +A   F +M + G+ PD V+   
Sbjct: 144 KSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLAT 203

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           LL   +    V++ ++   S   + G  +       ++D   +   L  A +L   +P E
Sbjct: 204 LLSGFTEFDSVNE-VRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIP-E 261

Query: 629 PTPIIWVALLNG 640
              + + ALL G
Sbjct: 262 RDSVTFNALLTG 273


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/676 (36%), Positives = 377/676 (55%), Gaps = 46/676 (6%)

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
           +A Q+    F  G+     WN ++ +Y +       L ++A++   +  + D     + L
Sbjct: 73  HALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLR-KMDFEVDNFMAPSVL 131

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
            AC  +     GK+         V ++   +DV   NA++  Y      E A  +F KM 
Sbjct: 132 KACGQVSWTQLGKEIHGF-----VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMM 186

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           + +V    V+WS +I   ++      AL++ R+M F  + P+ V +VS+++  A    + 
Sbjct: 187 ERDV----VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 242

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK------- 420
           +GK  H Y I+   +     P       AL+DMYAKC  + +AR +F+ +  K       
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVP----TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTA 298

Query: 421 ----------------------NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
                                 NRDV  WT M+ +Y+Q    + A  LF QM  +   V+
Sbjct: 299 MIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM--RTSGVR 356

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P   T+   L  CA   AL  G+ +H+Y+ + + E+    +   L+DMY++ GDI+ A  
Sbjct: 357 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDC-ILNTALVDMYAKCGDINAAGR 415

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F     R++  W +++TG+ MHG G++A   F +M ++G+ P+ +TF+ LL+ACSH+G+
Sbjct: 416 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 475

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G K F+ M   FG+  + EHY C+VDLLGRA  LDEA E+I+ MP++P  I+W AL+
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR+H N +LGELAA +LLE+E E  G   L+SNIYA A RW D A +R  MK  G+KK
Sbjct: 536 AACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKK 595

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG S ++       F +GD++HPQ ++I E+LA + +++   GYVP TS  L ++D+EE
Sbjct: 596 EPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEE 655

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K   L  HSEKLA+A+G+++TAP TPIRI KNLR+C DCH+A   +S I    II+RD N
Sbjct: 656 KETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRN 715

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHF+EG C+C  YW
Sbjct: 716 RFHHFREGYCSCGDYW 731



 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 261/535 (48%), Gaps = 65/535 (12%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +H+I  +  H    P       +SPS      WN +I    +   P NA  ++ Q+ +  
Sbjct: 64  AHIIKTHFHHALQIPLNDFPSGLSPSA----QWNFVITSYTKRNQPRNALNVYAQLRKMD 119

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           +  D +  P VLKACG++  ++ G  +H  +   G D +VFV NALM MY  C  + YAR
Sbjct: 120 FEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYAR 179

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            +FD+M +    D+VSW+T++ + +++ + +  L L   M   ++V+   V++V+ ++  
Sbjct: 180 LVFDKMMER---DVVSWSTMIRSLSRNKEFDMALELIREMNF-MQVRPSEVAMVSMVNLF 235

Query: 251 ASLGTWSRGK----------------------------QCGMMEEAKKVFERMKVKDVVS 282
           A       GK                            +CG +  A+++F  +  K VVS
Sbjct: 236 ADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 295

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           W AM+ G  R    E+A ALF   +  +V +    W+A+++ YAQ     +A ++F QM+
Sbjct: 296 WTAMIAGCIRSNRLEEARALFDSTQNRDVMI----WTAMLSAYAQANCIDQAFNLFDQMR 351

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+ P  VT+VSLLS CA  GAL LGK  H Y  K  + V      D ++  AL+DMYA
Sbjct: 352 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEV------DCILNTALVDMYA 405

Query: 403 KCKSVDVA-RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           KC  ++ A R+  +AI+   RD+  W  +I  ++ +G   +AL +F +M +Q   VKPN 
Sbjct: 406 KCGDINAAGRLFIEAIS---RDICMWNAIITGFAMHGYGEEALDIFAEMERQG--VKPND 460

Query: 462 FTLSCALMACARLAALRFGRQ-----IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            T    L AC+    +  G++     +H + L  Q E        C++D+  R+G +D A
Sbjct: 461 ITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY-----GCMVDLLGRAGLLDEA 515

Query: 517 RVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
             +  ++  + N + W +L+    +H        A  Q+ +  + P+   + VL+
Sbjct: 516 HEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE--IEPENCGYNVLM 568


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/779 (34%), Positives = 427/779 (54%), Gaps = 34/779 (4%)

Query: 57  HQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLP 116
           H+ +I  N        +I  Y+     S A SL   +     SV  W  LI    +    
Sbjct: 70  HKNVISTNT-------MIMGYLKSGNLSTARSLFDSMVQR--SVVTWTMLIGGYAQHNRF 120

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
             AF LF  M R G  PD  T   +L    E  S    + VH  +   G+DS + VCN+L
Sbjct: 121 LEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSL 180

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           +  Y +  +L  A  LF  M +    D V++N ++  Y++ G     + LF +M  D+  
Sbjct: 181 LDSYCKTRSLGLACHLFKHMAEK---DNVTFNALLTGYSKEGFNHDAINLFFKMQ-DLGF 236

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           +    +    L+A   +     G+Q         V +   V +V   NA++  YS+    
Sbjct: 237 RPSEFTFAAVLTAGIQMDDIEFGQQVHSF-----VVKCNFVWNVFVANALLDFYSKHDRI 291

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
            +A  LF +M +    ++ ++++ +I   A  G   E+L++FR++QF   +       +L
Sbjct: 292 VEARKLFYEMPE----VDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATL 347

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           LS  A+   L +G++ H     + +  D     +++V N+L+DMYAKC     A  +F  
Sbjct: 348 LSIAANSLNLEMGRQIH----SQAIVTDA--ISEVLVGNSLVDMYAKCDKFGEANRIFAD 401

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +A  ++    WT +I  Y Q G   D L LF +M +    +  ++ T +  L ACA LA+
Sbjct: 402 LA--HQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAK--IGADSATYASILRACANLAS 457

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           L  G+Q+H+ ++R+     + F  + L+DMY++ G I  A  +F  +  RN VSW +L++
Sbjct: 458 LTLGKQLHSRIIRSGCLSNV-FSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALIS 516

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
            Y  +G G  A  +F+QM   GL P+ V+FL +L ACSH G+V++GL+YF+SM++ + + 
Sbjct: 517 AYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLE 576

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
            R EHYA +VD+L R+ R DEA +L+  MP EP  I+W ++LN CRIH N EL   AA++
Sbjct: 577 PRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQ 636

Query: 657 LLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           L  ++  +D + Y  +SNIYA AG W  V +++  ++  G++K P  SWV+ K+ T  F 
Sbjct: 637 LFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFS 696

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
             D +HPQ+++I   L  L ++++  GY P ++ ALH+VD+E K + L  HSE++A+A+ 
Sbjct: 697 ANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFA 756

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +++T  G+PI + KNLR C DCH+AI  IS I+N EI +RDS+RFHHF +GSC+CK YW
Sbjct: 757 LISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 201/382 (52%), Gaps = 21/382 (5%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q G +  A+K+F+ M  K+V+S N M+ GY + G+   A +LF  M    V+ +VVTW+ 
Sbjct: 54  QRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSM----VQRSVVTWTM 109

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I GYAQ     EA ++F  M   G+ P+ +TL +LLSG     ++    + H + +K  
Sbjct: 110 LIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVK-- 167

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           +  D +    LMV N+L+D Y K +S+ +A  +F  +A K  D  T+  ++  YS+ G  
Sbjct: 168 VGYDST----LMVCNSLLDSYCKTRSLGLACHLFKHMAEK--DNVTFNALLTGYSKEGFN 221

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           +DA+ LF +M  QD   +P+ FT +  L A  ++  + FG+Q+H++V++  +   + FVA
Sbjct: 222 HDAINLFFKM--QDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNV-FVA 278

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N L+D YS+   I  AR +F  + + + +S+  L+T    +G  +++   F +++     
Sbjct: 279 NALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFD 338

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA--CIVDLLGRANRLDEA 618
                F  LL   ++S  ++ G +     S+     A +E      +VD+  + ++  EA
Sbjct: 339 RRQFPFATLLSIAANSLNLEMGRQIH---SQAIVTDAISEVLVGNSLVDMYAKCDKFGEA 395

Query: 619 VELIEGMPMEPTPIIWVALLNG 640
             +   +  + + + W AL++G
Sbjct: 396 NRIFADLAHQ-SSVPWTALISG 416



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/515 (24%), Positives = 222/515 (43%), Gaps = 57/515 (11%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------------- 202
           V A +  +GFD N    N  +  + +   L  AR+LFDEM    +               
Sbjct: 29  VDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGN 88

Query: 203 --------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
                          +V+W  ++  YAQ         LFA M     V  D ++L   LS
Sbjct: 89  LSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVP-DHITLATLLS 147

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM-R 307
                 + +   Q         V +      ++  N+++  Y +  S   A  LFK M  
Sbjct: 148 GFTEFESVNEVAQV-----HGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAE 202

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           ++NV  N     A++ GY++ G  H+A+++F +MQ  G  P+  T  ++L+    +  + 
Sbjct: 203 KDNVTFN-----ALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIE 257

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G++ H + +K       +   ++ V NAL+D Y+K   +  AR +F  +     D  ++
Sbjct: 258 FGQQVHSFVVK------CNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEV--DGISY 309

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH--A 485
            V+I   + NG   ++L LF ++  Q        F  +  L   A    L  GRQIH  A
Sbjct: 310 NVLITCCAWNGRVEESLELFREL--QFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQA 367

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            V     E+L   V N L+DMY++      A  +F +L  ++ V WT+L++GY   GL +
Sbjct: 368 IVTDAISEVL---VGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHE 424

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
                F +M +  +  D  T+  +L AC++   +  G K   S     G  +     + +
Sbjct: 425 DGLKLFVEMHRAKIGADSATYASILRACANLASLTLG-KQLHSRIIRSGCLSNVFSGSAL 483

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           VD+  +   + EA+++ + MP+  + + W AL++ 
Sbjct: 484 VDMYAKCGSIKEALQMFQEMPVRNS-VSWNALISA 517


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/719 (39%), Positives = 398/719 (55%), Gaps = 28/719 (3%)

Query: 127 MRRGWHP-DEYTFPFVLKACGELPSS----RCGSSVHAVICSSGF--DSNVFVCNALMAM 179
           M  G HP   +T   VL+A   LP++    R G   HA    +G       F  NAL++M
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           YAR   ++ A++LF     PG  D+V+WNT+V+   QSG  +  +     M   + V+ D
Sbjct: 61  YARLGLVADAQRLFAGA-TPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA-LGVRPD 118

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
           GV+  +AL AC+ L     G++   M       + +     V+ +A+V  Y+       A
Sbjct: 119 GVTFASALPACSRLELLDVGRE---MHAYVIKDDELAANSFVA-SALVDMYATHEQVGKA 174

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLS 358
             +F  +     +L +  W+A+I GYAQ G   EAL +F +M+   G  P   T+ S+L 
Sbjct: 175 RQVFDMVPDSGKQLGM--WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLP 232

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA   A    +  H Y +KR ++       +  V NAL+DMYA+    DVAR +F  + 
Sbjct: 233 ACARSEAFAGKEAVHGYVVKRGMA------GNRFVQNALMDMYARLGKTDVARRIFAMVD 286

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ-QDKLVKPNAFTLSCALMACARLAAL 477
               DV +W  +I      G   DA  L  +M Q ++  V PNA TL   L  CA LAA 
Sbjct: 287 LP--DVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAP 344

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G++IH Y +R+  +  +  V + L+DMY++ G +  +R VFD L +RN ++W  L+  
Sbjct: 345 ARGKEIHGYAVRHALDTDVA-VGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMA 403

Query: 538 YGMHGLGDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
           YGMHGLG +A   FD+M   G A P+ VTF+  L ACSHSGMVD+GL+ F +M ++ G+ 
Sbjct: 404 YGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVE 463

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCRIHANVELGELAAN 655
              +  AC+VD+LGRA RLDEA  ++  M   E     W  +L  CR+H NV LGE+A  
Sbjct: 464 PTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGE 523

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           RLLELE E+   Y LL NIY+ AG+W   A +RS M+  GV K PGCSW++       F 
Sbjct: 524 RLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFM 583

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
            G+  HP S++++  +  L   + A GY P TS  LHD+DD +K  +L  HSEKLA+A+G
Sbjct: 584 AGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFG 643

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +L  APG  IR+ KNLR+C DCH A  F+S ++  EI+LRD  RFHHF+ G C+C  YW
Sbjct: 644 LLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 234/475 (49%), Gaps = 25/475 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y      + A  L    +P    V  WN ++   V+  + D A +    M+  G  
Sbjct: 57  LLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVR 116

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           PD  TF   L AC  L     G  +HA VI      +N FV +AL+ MYA  + +  ARQ
Sbjct: 117 PDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQ 176

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD +   G   +  WN ++  YAQ+G  E  L LFARM  +        ++ + L ACA
Sbjct: 177 VFDMVPDSGK-QLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 235

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
               ++ GK+         V +R    +    NA++  Y+R+G  + A  +F  +   +V
Sbjct: 236 RSEAFA-GKEA----VHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDV 290

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC---GLEPNVVTLVSLLSGCASVGALLL 368
               V+W+ +I G   +GH  +A  + R+MQ     G+ PN +TL++LL GCA + A   
Sbjct: 291 ----VSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPAR 346

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GKE H Y ++  L        D+ V +AL+DMYAKC  + ++R +FD + P+ R+  TW 
Sbjct: 347 GKEIHGYAVRHALDT------DVAVGSALVDMYAKCGCLALSRAVFDRL-PR-RNTITWN 398

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           V+I +Y  +G   +A  LF +M    +  +PN  T   AL AC+    +  G Q+   + 
Sbjct: 399 VLIMAYGMHGLGGEATVLFDRMTASGE-ARPNEVTFMAALAACSHSGMVDRGLQLFHAME 457

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMH 541
           R+      P +  C++D+  R+G +D A  +  +++  ++ V +W++++    +H
Sbjct: 458 RDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLH 512



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 167/367 (45%), Gaps = 21/367 (5%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM-MRR 129
           S L+  Y +H     A  +   +  S   +  WNA+I    +  + + A RLF +M    
Sbjct: 159 SALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEA 218

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G+ P E T   VL AC    +     +VH  +   G   N FV NALM MYAR      A
Sbjct: 219 GFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVA 278

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG--DVKVQGDGVSLVNAL 247
           R++F  +  P   D+VSWNT++      G       L   M    +  V  + ++L+  L
Sbjct: 279 RRIFAMVDLP---DVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLL 335

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
             CA L   +RGK+         V   +   DV   +A+V  Y++ G    + A+F ++ 
Sbjct: 336 PGCAILAAPARGKEI----HGYAVRHALDT-DVAVGSALVDMYAKCGCLALSRAVFDRLP 390

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGAL 366
           +     N +TW+ +I  Y   G G EA  +F +M   G   PN VT ++ L+ C+  G +
Sbjct: 391 RR----NTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMV 446

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G +   + ++R   V+ + PD   ++  ++D+  +   +D A  M  ++    + V+ 
Sbjct: 447 DRGLQLF-HAMERDHGVEPT-PD---ILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSA 501

Query: 427 WTVMIGS 433
           W+ M+G+
Sbjct: 502 WSTMLGA 508


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/553 (42%), Positives = 338/553 (61%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y  +GS + A  +F + R+  +      W+A+    A  GHG E LD++ QM + G
Sbjct: 119 LINMYYELGSIDRALKVFDETRERTI----YVWNALFRALAMVGHGKELLDLYIQMNWIG 174

Query: 346 LEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              +  T   +L  C     SV  L  GKE H + ++        +  ++ V+  L+D+Y
Sbjct: 175 TPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRH------GYEANIHVMTTLLDVY 228

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK  SV  A  +F A+  KN    +W+ MI  +++N     AL LF  M  +     PN+
Sbjct: 229 AKFGSVSYANSVFCAMPTKN--FVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNS 286

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  G+ IH Y+LR Q + ++P V N LI MY R G++   + VFD
Sbjct: 287 VTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILP-VLNALITMYGRCGEVLMGQRVFD 345

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           N+K+R+VVSW SL++ YGMHG G KA   F+ M  +G++P  ++F+ +L ACSH+G+V++
Sbjct: 346 NMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEE 405

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G   F+SM  ++ I    EHYAC+VDLLGRANRL EA++LIE M  EP P +W +LL  C
Sbjct: 406 GKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSC 465

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A+  L ELE    G+Y LL++IYA A  W +   +  L++  G++K PG
Sbjct: 466 RIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPG 525

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSW++ K    +F   D  +PQ ++I+ +L  L   +KA GYVPQT+  L+D+D+EEK  
Sbjct: 526 CSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKER 585

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLA+A+G++ TA G  IRI KNLR+C DCH+   FIS   N EI++RD NRFH
Sbjct: 586 IVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFH 645

Query: 822 HFKEGSCTCKGYW 834
           HF++G C+C  YW
Sbjct: 646 HFRDGVCSCGDYW 658



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 226/491 (46%), Gaps = 38/491 (7%)

Query: 61  IVQNLTHVPP-SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNA 119
           I Q + HVP  SHL   Y SH +    +S +  ++PS   +   N+   + ++       
Sbjct: 6   IPQFVRHVPSQSHL--CYTSHVSSRVPVSFVS-LNPSANLINDINSNNNQLIQSLCKGGN 62

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            +  L ++    +P + TF  ++ +C +  S   G  VH  +  SGFD + F+   L+ M
Sbjct: 63  LKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINM 122

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y    ++  A ++FDE  +     I  WN +  A A  G  +  L L+ +M   +    D
Sbjct: 123 YYELGSIDRALKVFDETRER---TIYVWNALFRALAMVGHGKELLDLYIQMNW-IGTPSD 178

Query: 240 GVSLVNALSACA----SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
             +    L AC     S+    +GK     E    +       ++     ++  Y++ GS
Sbjct: 179 RFTYTYVLKACVVSELSVCPLRKGK-----EIHAHILRHGYEANIHVMTTLLDVYAKFGS 233

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF--CGLEPNVVTL 353
              A ++F  M  +    N V+WSA+IA +A+     +AL++F+ M F  C   PN VT+
Sbjct: 234 VSYANSVFCAMPTK----NFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTM 289

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           V++L  CA + AL  GK  H Y ++R L         L V+NALI MY +C  V + + +
Sbjct: 290 VNMLQACAGLAALEQGKLIHGYILRRQLD------SILPVLNALITMYGRCGEVLMGQRV 343

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +  K RDV +W  +I  Y  +G    A+ +F  M  Q   V P+  +    L AC+ 
Sbjct: 344 FDNM--KKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQG--VSPSYISFITVLGACSH 399

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVS 530
              +  G+ +   +L ++Y  + P + +  C++D+  R+  +  A +++ D   +     
Sbjct: 400 AGLVEEGKILFESML-SKYR-IHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTV 457

Query: 531 WTSLMTGYGMH 541
           W SL+    +H
Sbjct: 458 WGSLLGSCRIH 468



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P   T    + +CA+  +L +G  +H  ++ + ++   PF+A  LI+MY   G ID A  
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQ-DPFLATKLINMYYELGSIDRALK 134

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           VFD  ++R +  W +L     M G G +    + QM   G   D  T+  +L AC
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKAC 189


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/590 (42%), Positives = 365/590 (61%), Gaps = 21/590 (3%)

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           NAL  C      SRGK  G+  E   + +R    D+ +WN ++  Y +     DA  LF 
Sbjct: 43  NALQDCIQKDEPSRGK--GLHCE---ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFD 97

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M + N     +++  +I GYA+     EA+++F ++    L PN  T  S+L  CA++ 
Sbjct: 98  EMPERNT----ISFVTLIQGYAESVRFLEAIELFVRLHREVL-PNQFTFASVLQACATME 152

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            L LG + HC+ IK      G H D + V NAL+D+YAKC  ++ +  +F A +P   DV
Sbjct: 153 GLNLGNQIHCHVIKI-----GLHSD-VFVSNALMDVYAKCGRMENSMELF-AESPHRNDV 205

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            TW  +I  + Q G    AL LF  M +    V+    T S AL ACA LAAL  G QIH
Sbjct: 206 -TWNTVIVGHVQLGDGEKALRLFLNMLEYR--VQATEVTYSSALRACASLAALEPGLQIH 262

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
           +  ++  ++  I  V N LIDMY++ G I  AR+VFD + +++ VSW ++++GY MHGLG
Sbjct: 263 SLTVKTTFDKDI-VVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLG 321

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            +A   FD+M++  + PD +TF+ +L AC+++G++DQG  YF SM ++ GI    EHY C
Sbjct: 322 REALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTC 381

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +V LLGR   LD+AV+LI+ +P +P+ ++W ALL  C IH ++ELG ++A R+LE+E + 
Sbjct: 382 MVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQD 441

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
             ++ LLSN+YA A RW +VA +R  MK  GVKK PG SW++ +    +F VGD +HP+ 
Sbjct: 442 KATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEV 501

Query: 725 QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
           + I  +L  L  + K  GY+P  +  L DV+DEEK  LL+ HSE+LAL++GI+ T  G+P
Sbjct: 502 RVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSP 561

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRI KNLRIC DCH+AI  IS ++  EI++RD NRFHHF+EG C+C  YW
Sbjct: 562 IRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/414 (29%), Positives = 202/414 (48%), Gaps = 33/414 (7%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           + + +   L+ C +      G  +H  I   G   ++F  N L+ MY + D L  A +LF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           DEM +    + +S+ T++  YA+S      + LF R+  +  V  +  +  + L ACA++
Sbjct: 97  DEMPER---NTISFVTLIQGYAESVRFLEAIELFVRLHRE--VLPNQFTFASVLQACATM 151

Query: 254 GTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
              + G Q  C +++            DV   NA++  Y++ G  E++  LF     E+ 
Sbjct: 152 EGLNLGNQIHCHVIKIGLH-------SDVFVSNALMDVYAKCGRMENSMELFA----ESP 200

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             N VTW+ VI G+ Q G G +AL +F  M    ++   VT  S L  CAS+ AL  G +
Sbjct: 201 HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ 260

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H  T+K           D++V NALIDMYAKC S+  AR++FD +    +D  +W  MI
Sbjct: 261 IHSLTVKTTFD------KDIVVTNALIDMYAKCGSIKDARLVFDLM--NKQDEVSWNAMI 312

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             YS +G   +AL +F +M  Q+  VKP+  T    L ACA    L  G+     ++++ 
Sbjct: 313 SGYSMHGLGREALRIFDKM--QETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDH 370

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
              + P + +  C++ +  R G +D A  + D +  Q +V+ W +L+    +H 
Sbjct: 371 --GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHN 422



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 143/252 (56%), Gaps = 14/252 (5%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A  LF+++ R    P+++TF  VL+AC  +     G+ +H  +   G  S+VFV NALM 
Sbjct: 123 AIELFVRLHREVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMD 181

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           +YA+C  +  + +LF E   P   D V+WNT++  + Q GD E  L LF  M  + +VQ 
Sbjct: 182 VYAKCGRMENSMELFAE--SPHRND-VTWNTVIVGHVQLGDGEKALRLFLNML-EYRVQA 237

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
             V+  +AL ACASL     G Q   +   K  F+    KD+V  NA++  Y++ GS +D
Sbjct: 238 TEVTYSSALRACASLAALEPGLQIHSL-TVKTTFD----KDIVVTNALIDMYAKCGSIKD 292

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  +F  M ++    + V+W+A+I+GY+  G G EAL +F +MQ   ++P+ +T V +LS
Sbjct: 293 ARLVFDLMNKQ----DEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLS 348

Query: 359 GCASVGALLLGK 370
            CA+ G L  G+
Sbjct: 349 ACANAGLLDQGQ 360



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 55/307 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I   V+L   + A RLFL M+       E T+   L+AC  L +   G  +H++  
Sbjct: 207 WNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV 266

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + FD ++ V NAL+ MYA+C ++  AR +FD M +    D VSWN +++ Y+  G    
Sbjct: 267 KTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQ---DEVSWNAMISGYSMHGLGRE 323

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F +M  + +V+ D ++ V  LSACA+ G   +G+                      
Sbjct: 324 ALRIFDKMQ-ETEVKPDKLTFVGVLSACANAGLLDQGQ---------------------- 360

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQEN-VKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
                             A F  M Q++ ++  +  ++ ++    + GH  +A+ +  ++
Sbjct: 361 ------------------AYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEI 402

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
            F   +P+V+   +LL  C     + LG+     + +RVL ++   P D      L +MY
Sbjct: 403 PF---QPSVMVWRALLGACVIHNDIELGR----ISAQRVLEME---PQDKATHVLLSNMY 452

Query: 402 AKCKSVD 408
           A  K  D
Sbjct: 453 ATAKRWD 459


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/762 (35%), Positives = 417/762 (54%), Gaps = 44/762 (5%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  L  R+S    SV  +N LI     +     A  LF +        D++++  VL AC
Sbjct: 63  AQKLFDRMSER--SVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSAC 120

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
           G++     G  +H +    G    VF+ N L+ MY +C+ + +AR LF+   +    D V
Sbjct: 121 GQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDE---LDNV 177

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           SWN+++  YA+ G  E  L L  +M  TG   ++ +  +L +AL +C             
Sbjct: 178 SWNSLITGYARVGAYEEMLKLLVKMHHTG---LRLNAFTLGSALKSCY--------LNLN 226

Query: 264 MMEEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
            M    K      VK     D+V   A++  Y++ G   DA  LF+    +NV    V +
Sbjct: 227 NMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNV----VMY 282

Query: 319 SAVIAGYAQ-----RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           +A+IAG+ Q     +   +EAL +F QMQ  G++P+  T  S++  C  + A   GK+ H
Sbjct: 283 NAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIH 342

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            +  K  +        D  + + LI++Y+   S +     F++  PK  D+ +WT MI  
Sbjct: 343 AHICKHNIQ------SDEFIGSTLIELYSLLGSTEDQLKCFNS-TPK-LDIVSWTTMIAG 394

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+QNG    ALALF ++    K  KP+ F ++  L ACA +AA R G Q+H Y ++    
Sbjct: 395 YAQNGQFESALALFYELLASGK--KPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIG 452

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
            L   V N  I MY++SG++D+A++ F+ +K  +VVSW+ ++     HG    A   F+ 
Sbjct: 453 TL-AIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFEL 511

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M+  G+ P+ +TFL +L ACSH G+V++GL+Y++SM K++ +    +H  CIVDLL RA 
Sbjct: 512 MKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAG 571

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
           RL +A   I        P++W  LL+GCRI+ ++  G+  A +L+EL+ ++  SY LL N
Sbjct: 572 RLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYN 631

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IY +AG      +IR LMK  G++K PG SW++      +F VGD +HP SQ IY+ L G
Sbjct: 632 IYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEG 691

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDL-LFEHSEKLALAYGILTTAPGTPIRITKNLR 792
           ++++ + +GY+ Q    +     E KG L +  HSEKLA+++GI++  P  P+++ KNLR
Sbjct: 692 MLEKKRKIGYIDQKIQNVTISTKEVKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLR 751

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +C DCH+ +  IS++   EIILRDS RFHHFKEGSC+C  YW
Sbjct: 752 VCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSCSCNDYW 793



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 194/449 (43%), Gaps = 86/449 (19%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G M  A+K+F+RM  + V+S+N +++GY  +G +  A  LF + R   +KL+  +++ V+
Sbjct: 58  GEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVL 117

Query: 323 AGYAQRG--------HGH-----------------------EALDVFRQMQFCGLEPNVV 351
           +   Q          HG                        E +D  R +     E + V
Sbjct: 118 SACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNV 177

Query: 352 TLVSLLSGCASVGA------LLL-------------------------------GKETHC 374
           +  SL++G A VGA      LL+                               GK  H 
Sbjct: 178 SWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHG 237

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           YT+K+ L +      D++V  AL+DMYAK   +  A  +F   +P N++V  +  MI  +
Sbjct: 238 YTVKQGLDL------DIVVGTALLDMYAKTGYLGDAIQLFRT-SP-NQNVVMYNAMIAGF 289

Query: 435 SQNGG-----ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
            Q        A +AL LF QM +Q   +KP+ FT S  +  C  + A  +G+QIHA++ +
Sbjct: 290 IQTEDIDKECAYEALKLFSQMQRQG--IKPSDFTFSSIIKICNHIEAFEYGKQIHAHICK 347

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
           +  +    F+ + LI++YS  G  +     F++  + ++VSWT+++ GY  +G  + A  
Sbjct: 348 HNIQS-DEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALA 406

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            F ++   G  PD      +L AC+       G +      K  GI   A      + + 
Sbjct: 407 LFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKT-GIGTLAIVQNSQISMY 465

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALL 638
            ++  LD A    E +   P  + W  ++
Sbjct: 466 AKSGNLDSAKITFEEIK-NPDVVSWSVMI 493



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           ++Y+K   +  A+ +FD ++   R V ++ ++I  Y   G  + A+ LF +   +   +K
Sbjct: 52  NLYSKWGEMGNAQKLFDRMS--ERSVISYNILISGYGGMGFYHKAIGLFSE--ARMACLK 107

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            + F+ +  L AC ++     G+ IH   +       + F+ N LIDMY +   ID AR+
Sbjct: 108 LDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQV-FLTNLLIDMYCKCERIDHARL 166

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC--SHS 576
           +F++  + + VSW SL+TGY   G  ++      +M   GL  +  T    L +C  + +
Sbjct: 167 LFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLN 226

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
            MV  G K     + + G+         ++D+  +   L +A++L    P +   +++ A
Sbjct: 227 NMVSYG-KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNV-VMYNA 284

Query: 637 LLNG 640
           ++ G
Sbjct: 285 MIAG 288



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           YS+ G++  A+ +FD + +R+V+S+  L++GYG  G   KA   F + R   L  D  ++
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
             +L AC        G K    ++   G+  +      ++D+  +  R+D A  L E   
Sbjct: 114 AGVLSACGQIKDFALG-KVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSD 172

Query: 627 MEPTPIIWVALLNG-CRIHANVELGEL 652
            E   + W +L+ G  R+ A  E+ +L
Sbjct: 173 -ELDNVSWNSLITGYARVGAYEEMLKL 198


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/738 (34%), Positives = 399/738 (54%), Gaps = 70/738 (9%)

Query: 152 RCGSSVHAVICSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------- 202
           R   +VH +I  +   +   F+ N L+  YA+   L+ AR++FDEM  P +         
Sbjct: 29  RVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSA 88

Query: 203 --------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
                               D VS+N ++  ++ +G     + L+  +  +  V+   ++
Sbjct: 89  LAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRIT 148

Query: 243 LVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMK 276
           L   +   ++L   + G                           + G++ +A++VF+ M+
Sbjct: 149 LSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEME 208

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            K VV +N ++TG  R    EDA  LF+ M    V  + +TW+ ++ G  Q G   EALD
Sbjct: 209 AKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           VFR+M+  G+  +  T  S+L+ C ++ AL  GK+ H Y I R       + D++ V +A
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY-ITRTW-----YEDNVFVGSA 318

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY+KC+S+ +A  +F  +  +N  + +WT MI  Y QN  + +A+  F +M Q D  
Sbjct: 319 LVDMYSKCRSIRLAEAVFRRMTCRN--IISWTAMIVGYGQNACSEEAVRAFSEM-QMDG- 374

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP+ FTL   + +CA LA+L  G Q H   L +     I  V+N L+ +Y + G I+ A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT-VSNALVTLYGKCGSIEDA 433

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +FD +   + VSWT+L+TGY   G   +    F++M   GL PDGVTF+ +L ACS +
Sbjct: 434 HRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRA 493

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++G  YFDSM K+ GI    +HY C++DL  R+ R  EA E I+ MP  P    W  
Sbjct: 494 GLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ CR+  N+E+G+ AA  LLE + +   SY LL +++A  G+W +VA +R  M+   V
Sbjct: 554 LLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PGCSW++ K     F   D++HP S +IYE L  L  ++   GY P  S  LHDV D
Sbjct: 614 KKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVAD 673

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
            +K  ++  HSEKLA+A+G++      PIRI KNLR+C DCH+A  FIS I   +I++RD
Sbjct: 674 ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRD 733

Query: 817 SNRFHHFKEGSCTCKGYW 834
           + RFH F +G+C+C  +W
Sbjct: 734 AVRFHKFSDGTCSCGDFW 751



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 141/560 (25%), Positives = 235/560 (41%), Gaps = 87/560 (15%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLP 116
           +I++     PP+ L+   ++  A S  L+  +R+    P P ++F  NAL+      RL 
Sbjct: 37  LILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDP-NLFTRNALLSALAHSRLV 95

Query: 117 DNAFRLFLQMMRR--------------------------------GWHPDEYTFPFVLKA 144
            +  RLF  M  R                                   P   T   ++  
Sbjct: 96  PDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMV 155

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-- 202
              L     G SVH  +   GF +  FV + L+ MYA+   +  AR++F EM    +   
Sbjct: 156 ASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 203 --------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
                                     D ++W T+V    Q+G     L +F RM  +  V
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE-GV 274

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGS 295
             D  +  + L+AC +L     GKQ            R   +D V   +A+V  YS+  S
Sbjct: 275 GIDQYTFGSILTACGALAALEEGKQI------HAYITRTWYEDNVFVGSALVDMYSKCRS 328

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A A+F++M   N+    ++W+A+I GY Q     EA+  F +MQ  G++P+  TL S
Sbjct: 329 IRLAEAVFRRMTCRNI----ISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           ++S CA++ +L  G + HC      L++       + V NAL+ +Y KC S++ A  +FD
Sbjct: 385 VISSCANLASLEEGAQFHC------LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFD 438

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            ++    D  +WT ++  Y+Q G A + + LF +M      +KP+  T    L AC+R  
Sbjct: 439 EMS--FHDQVSWTALVTGYAQFGKAKETIDLFEKMLANG--LKPDGVTFIGVLSACSRAG 494

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSL 534
            +  G      + ++   + I     C+ID+YSRSG    A      +    +   W +L
Sbjct: 495 LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 535 MTGYGMHGLGDKAHWAFDQM 554
           ++   + G  +   WA + +
Sbjct: 555 LSSCRLRGNMEIGKWAAENL 574



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 181/389 (46%), Gaps = 29/389 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++    +  L   A  +F +M   G   D+YTF  +L ACG L +   G  +HA I 
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
            + ++ NVFV +AL+ MY++C ++  A  +F  M     C +I+SW  ++  Y Q+  +E
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM----TCRNIISWTAMIVGYGQNACSE 361

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             +  F+ M  D  ++ D  +L + +S+CA+L +   G Q   +     +   + V    
Sbjct: 362 EAVRAFSEMQMD-GIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS--- 417

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA+VT Y + GS EDA  LF +M       + V+W+A++ GYAQ G   E +D+F +M
Sbjct: 418 --NALVTLYGKCGSIEDAHRLFDEMSFH----DQVSWTALVTGYAQFGKAKETIDLFEKM 471

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              GL+P+ VT + +LS C+  G +    E  C     +    G  P D      +ID+Y
Sbjct: 472 LANGLKPDGVTFIGVLSACSRAGLV----EKGCDYFDSMQKDHGIVPIDDHY-TCMIDLY 526

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           ++      A      + P + D   W  ++ S    G           + + D    P +
Sbjct: 527 SRSGRFKEAEEFIKQM-PHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ-NPAS 584

Query: 462 FTLSCALMAC----ARLAALRFG---RQI 483
           + L C++ A       +A LR G   RQ+
Sbjct: 585 YVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/701 (36%), Positives = 391/701 (55%), Gaps = 57/701 (8%)

Query: 174  NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
            N L+ +YA+   L  A ++F+E+ Q    D+ SW  +++ +A+ G +   L LF +M  D
Sbjct: 325  NHLLNLYAKSQNLEQAHKMFEEIPQT---DVFSWTVLISGFARIGLSADVLGLFTKMQ-D 380

Query: 234  VKVQGDGVSLVNALSACASLGTWSR-GK--------------------------QCGMME 266
              V  +  +L   L +C+S    SR GK                          +C    
Sbjct: 381  QGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFG 440

Query: 267  EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
             A+K+F  M  KD VSWN M++ Y +IG  + +  LF+++  ++      +W+ +I G  
Sbjct: 441  YAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDA----ASWNTMIDGLM 496

Query: 327  QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
            + G    AL++  +M   G   N +T    L   +S+  L LGK+ H   +K  +     
Sbjct: 497  RNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGV----- 551

Query: 387  HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-------------DVATWTVMIGS 433
              DD  V N+LIDMY KC  ++ A V+F  +  ++              +  +W+ M+  
Sbjct: 552  -LDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSG 610

Query: 434  YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
            Y QNG   DAL  F  M      V+ + FTL+  + ACA    L  GRQ+H Y+ +  + 
Sbjct: 611  YVQNGRFEDALKTFSFMICSQ--VEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHG 668

Query: 494  MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
            + + F+ + +IDMY + G ++ A ++F+  K RNVV WTS+++G  +HG G +A   F+ 
Sbjct: 669  LDV-FLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFEL 727

Query: 554  MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
            M  EG+ P+ V+F+ +L ACSH+G++++G KYF  M + +GI   AEH+ C+VDL GRA 
Sbjct: 728  MINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAG 787

Query: 614  RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            RL+E  E I    +     +W + L+ CR+H N+E+G     +LLELE    G Y L S+
Sbjct: 788  RLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSS 847

Query: 674  IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
            I A   RW++ A+IRSLM+  GVKK P  SW+Q K    +F +GDR+HPQ  KIY  L  
Sbjct: 848  ICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDE 907

Query: 734  LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
            L+ R+K +GY    +  + DV+ E++  LL  HSEKLA+AYGI++TAPGTPIR+ KNLR+
Sbjct: 908  LIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRV 967

Query: 794  CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            C DCH+ I + S ++  EII+RD +RFHHFK G C+C  YW
Sbjct: 968  CIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/534 (25%), Positives = 236/534 (44%), Gaps = 71/534 (13%)

Query: 55  LIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLR 114
           ++H ++I      +  +HL+  Y        A  + + I  +   VF W  LI    R+ 
Sbjct: 309 VLHAKLIKNGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQT--DVFSWTVLISGFARIG 366

Query: 115 LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG-ELPSSRCGSSVHAVICSSGFDSNVFVC 173
           L  +   LF +M  +G  P+++T   VLK+C   +  SR G  +H  I  +G D +  + 
Sbjct: 367 LSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN 426

Query: 174 NALMAMYARCDTLSYARQLFDEMFQ-----------------------------PGICDI 204
           N+++  Y +C    YA +LF  M +                             PG  D 
Sbjct: 427 NSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGK-DA 485

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
            SWNT++    ++G     L L  +M        + ++   AL   +SL     GKQ   
Sbjct: 486 ASWNTMIDGLMRNGCERVALELLYKMVA-AGPAFNKLTFSIALVLASSLSVLGLGKQI-- 542

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN---------- 314
                +V +   + D    N+++  Y + G  E A  +FK + QE+  +N          
Sbjct: 543 ---HTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVV 599

Query: 315 -VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V+WS++++GY Q G   +AL  F  M    +E +  TL S++S CAS G L LG++ H
Sbjct: 600 ESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVH 659

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y I+++      H  D+ + +++IDMY KC S++ A ++F+    K+R+V  WT MI  
Sbjct: 660 GY-IQKI-----GHGLDVFLGSSIIDMYVKCGSLNDAWLIFN--QAKDRNVVLWTSMISG 711

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-----HAYVL 488
            + +G   +A+ LF  M  +   + PN  +    L AC+    L  G +        Y +
Sbjct: 712 CALHGQGREAVRLFELMINEG--ITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGI 769

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTAR-VVFDNLKQRNVVSWTSLMTGYGMH 541
           R   E        C++D+Y R+G ++  +  + +N   +    W S ++   +H
Sbjct: 770 RPGAEHF-----TCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVH 818


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/680 (38%), Positives = 398/680 (58%), Gaps = 29/680 (4%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  +  SG   N F+   L+   +    + YAR+LFDE   P   D+  WN I+ +Y++
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYP---DVFMWNAIIRSYSR 131

Query: 217 SGDAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           +      + ++   R TG   V  DG +    L AC  L  +  G  C +     ++ + 
Sbjct: 132 NNMYRDTVEMYRWMRWTG---VHPDGFTFPYVLKACTELLDF--GLSCII---HGQIIKY 183

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   N +V  Y++ G    A  +F  +    +    V+W+++I+GYAQ G   EA
Sbjct: 184 GFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTI----VSWTSIISGYAQNGKAVEA 239

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L +F QM+  G++P+ + LVS+L     V  L  G+  H + IK  L       D+  ++
Sbjct: 240 LRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLE------DEPALL 293

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L   YAKC  V VA+  FD +  K  +V  W  MI  Y++NG A +A+ LF  M  ++
Sbjct: 294 ISLTAFYAKCGLVTVAKSFFDQM--KTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRN 351

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             +KP++ T+  A++A A++ +L   + +  YV ++ Y   I FV   LIDMY++ G ++
Sbjct: 352 --IKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDI-FVNTSLIDMYAKCGSVE 408

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR VFD    ++VV W++++ GYG+HG G +A   +  M++ G+ P+ VTF+ LL AC+
Sbjct: 409 FARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACN 468

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+V +G + F  M K+F I  R EHY+C+VDLLGRA  L EA   I  +P+EP   +W
Sbjct: 469 HSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVW 527

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ C+I+  V LGE AAN+L  L+    G Y  LSN+YA++  W  VA +R LM+  
Sbjct: 528 GALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREK 587

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G+ K  G S ++       F VGD++HP +++I++ L  L +R+K +G+VP T   LHD+
Sbjct: 588 GLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDL 647

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           + EEK + L  HSE++A+AYG+++TAPGT +RITKNLR C +CHSAI  IS ++  EII+
Sbjct: 648 NYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIV 707

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD+NRFHHFK+G C+C  YW
Sbjct: 708 RDANRFHHFKDGLCSCGDYW 727



 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 211/449 (46%), Gaps = 88/449 (19%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WNA+IR   R  +  +   ++  M   G HPD +TFP+VLKAC EL        +H 
Sbjct: 119 VFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHG 178

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            I   GF S+VFV N L+A+YA+C  +  A+ +FD ++      IVSW +I++ YAQ+G 
Sbjct: 179 QIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHR---TIVSWTSIISGYAQNGK 235

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------- 260
           A   L +F++M  +  V+ D ++LV+ L A   +    +G+                   
Sbjct: 236 AVEALRMFSQMRNN-GVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLI 294

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG++  AK  F++MK  +V+ WNAM++GY++ G  E+A  LF  M   N+K 
Sbjct: 295 SLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIK- 353

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                             P+ VT+ S +   A VG+L L +   
Sbjct: 354 ----------------------------------PDSVTVRSAVLASAQVGSLELAQWMD 379

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y  K       ++  D+ V  +LIDMYAKC SV+ AR +FD     ++DV  W+ MI  
Sbjct: 380 DYVSK------SNYGSDIFVNTSLIDMYAKCGSVEFARRVFD--RNSDKDVVMWSAMIMG 431

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI------HAYV 487
           Y  +G   +A+ L+  M Q    V PN  T    L AC     ++ G ++         V
Sbjct: 432 YGLHGQGWEAINLYHVMKQAG--VFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIV 489

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            RN++        +C++D+  R+G +  A
Sbjct: 490 PRNEH-------YSCVVDLLGRAGYLGEA 511



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 24/281 (8%)

Query: 50  LTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALI 107
           L Q   IH  +I   L   P     L A Y      + A S   ++  +  +V  WNA+I
Sbjct: 271 LEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTT--NVIMWNAMI 328

Query: 108 RRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD 167
               +    + A  LF  M+ R   PD  T    + A  ++ S      +   +  S + 
Sbjct: 329 SGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYG 388

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           S++FV  +L+ MYA+C ++ +AR++FD        D+V W+ ++  Y   G     + L+
Sbjct: 389 SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK---DVVMWSAMIMGYGLHGQGWEAINLY 445

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN--- 284
             M     V  + V+ +  L+AC            G+++E  ++F  MK  ++V  N   
Sbjct: 446 HVMK-QAGVFPNDVTFIGLLTAC---------NHSGLVKEGWELFHCMKDFEIVPRNEHY 495

Query: 285 -AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
             +V    R G   +A A   K+    ++  V  W A+++ 
Sbjct: 496 SCVVDLLGRAGYLGEACAFIMKIP---IEPGVSVWGALLSA 533


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/737 (36%), Positives = 404/737 (54%), Gaps = 86/737 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG----ELPSSRCGSSVH 158
           +NAL+    R RLPD A  LF +M  R    D  ++  ++         LP +       
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSR----DLASYNALISGLSLRRQTLPDAA------ 100

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A + S  F  +V    +L+  Y R   L+ A +LF +M +    + VS+  ++       
Sbjct: 101 AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER---NHVSYTVLL------- 150

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
              GGL+                                     G + EA+++F+ M  +
Sbjct: 151 ---GGLL-----------------------------------DAGRVNEARRLFDEMPDR 172

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DVV+W AM++GY + G   +A ALF +M     K NVV+W+A+I+GYAQ G  + A  +F
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVNLARKLF 228

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M     E N V+  ++L G    G        H      + +    HP  +   NA++
Sbjct: 229 EVMP----ERNEVSWTAMLVGYIQAG--------HVEDAAELFNAMPEHP--VAACNAMM 274

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             + +   VD A+ +F+ +  + RD  TW+ MI +Y QN    +AL+ F +M  +   V+
Sbjct: 275 VGFGQRGMVDAAKTVFEKM--RERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG--VR 330

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  ++   L  CA LA L +GR++HA +LR  ++M + F  + LI MY + G++D A+ 
Sbjct: 331 PNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDV-FAVSALITMYIKCGNLDKAKR 389

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF   + +++V W S++TGY  HGLG++A   F  MR  G++PDG+T++  L ACS++G 
Sbjct: 390 VFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGK 449

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G + F+SM+    I   AEHY+C+VDLLGR+  ++EA +LI+ MP+EP  +IW AL+
Sbjct: 450 VKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR+H N E+ E+AA +LLELE    G Y LLS+IY + GRW+D +++R  +    + K
Sbjct: 510 GACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNK 569

Query: 699 RPGCSWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            PGCSW++  +    F  GD   HP+   I  IL  L   +   GY    SF LHD+D+E
Sbjct: 570 SPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEE 629

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K   L  HSE+ A+AYG+L    G PIR+ KNLR+CGDCHSAI  I+ I + EI+LRD+
Sbjct: 630 QKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDA 689

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHFK+G C+C+ YW
Sbjct: 690 NRFHHFKDGFCSCRDYW 706



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 139/477 (29%), Positives = 227/477 (47%), Gaps = 42/477 (8%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P SV  + +L+R  VR  L  +A RLF QM      P+     + +   G L + R  
Sbjct: 107 PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM------PERNHVSYTVLLGGLLDAGRVN 160

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            +    +     D +V    A+++ Y +   ++ AR LFDEM +    ++VSW  +++ Y
Sbjct: 161 EARR--LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR---NVVSWTAMISGY 215

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           AQ+G+      LF  M              N +S  A L  +    Q G +E+A ++F  
Sbjct: 216 AQNGEVNLARKLFEVMPER-----------NEVSWTAMLVGYI---QAGHVEDAAELFNA 261

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           M    V + NAM+ G+ + G  + A  +F+KMR+ +      TWSA+I  Y Q     EA
Sbjct: 262 MPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDG----TWSAMIKAYEQNEFLMEA 317

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L  FR+M + G+ PN  +++S+L+ CA++  L  G+E H   ++    +      D+  +
Sbjct: 318 LSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM------DVFAV 371

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           +ALI MY KC ++D A+ +F    PK  D+  W  MI  Y+Q+G    AL +F  M    
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPK--DIVMWNSMITGYAQHGLGEQALGIFHDMRLAG 429

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             + P+  T   AL AC+    ++ GR+I   +  N          +C++D+  RSG ++
Sbjct: 430 --MSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 515 TARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            A  +  N+  + + V W +LM    MH   + A  A  ++ +  L P      VLL
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLE--LEPGNAGPYVLL 542



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 183/416 (43%), Gaps = 49/416 (11%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G +E A+  FE M ++   S+NA++ GY R    + A  LF++M       ++ +++A
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR----DLASYNA 84

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL-------------- 366
           +I+G + R       D    +      P+VV+  SLL G    G L              
Sbjct: 85  LISGLSLR--RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERN 142

Query: 367 ------LLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAP 419
                 LLG       +     +    PD D++   A++  Y +   +  AR +FD + P
Sbjct: 143 HVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM-P 201

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           K R+V +WT MI  Y+QNG  N A  LF  M ++++        +S   M    + A   
Sbjct: 202 K-RNVVSWTAMISGYAQNGEVNLARKLFEVMPERNE--------VSWTAMLVGYIQA--- 249

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G    A  L N          N ++  + + G +D A+ VF+ +++R+  +W++++  Y 
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYE 309

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISAR 598
            +    +A   F +M   G+ P+  + + +L  C+   ++D G +   +M +  F +   
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNGCRIHANVELGELA 653
           A   + ++ +  +   LD+A  +      EP  I+ W +++ G   H    LGE A
Sbjct: 370 A--VSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHG---LGEQA 418



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 42/210 (20%)

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N  I   +R+G+I+ AR  F+ +  R   S+ +L+ GY  + L D A   F +M    LA
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 561 -----------------------------PDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
                                        P  V+F  LL      G++   ++ F  M +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
              +S     Y  ++  L  A R++EA  L + MP +   + W A+L+G       + G 
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSG-----YCQAGR 189

Query: 652 LAANRLL--ELESEKDGSYTLLSNIYANAG 679
           +   R L  E+      S+T + + YA  G
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNG 219


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/675 (38%), Positives = 392/675 (58%), Gaps = 32/675 (4%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           D NVF  N L++ YA+   +  A QLFDEM QP   D VS+NT++AAYA+ GD +    L
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQP---DSVSYNTLIAAYARRGDTQPAFQL 127

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNA 285
           F  M  +  +  DG +L   ++AC        G   G++ +   +     +   VS  NA
Sbjct: 128 FLEMR-EAFLDMDGFTLSGIITAC--------GINVGLIRQLHALSVVTGLDSYVSVGNA 178

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++T YS+ G  ++A  +F  + ++    + V+W++++  Y Q   G +AL+++ +M   G
Sbjct: 179 LITSYSKNGFLKEARRIFHWLSEDR---DEVSWNSMVVAYMQHREGSKALELYLEMTVRG 235

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L  ++ TL S+L+   +V  LL G + H   IK      G H +   V + LID+Y+KC 
Sbjct: 236 LIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIK-----SGYHQNS-HVGSGLIDLYSKCG 289

Query: 406 SVDV-ARVMFDAIAPKNRDVATWTVMIGSYS-QNGGANDALALFPQMFQQDKLVKPNAFT 463
              +  R +FD I+  N D+  W  MI  YS     +++AL  F Q+  Q    +P+  +
Sbjct: 290 GCMLDCRKVFDEIS--NPDLVLWNTMISGYSLYEDLSDEALECFRQL--QVVGHRPDDCS 345

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L C + AC+ +++   GRQ+H   L+         V N LI MYS+ G++  A+ +FD +
Sbjct: 346 LVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTM 405

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            + N VS+ S++ GY  HG+G ++   F +M + G  P  +TF+ +L AC+H+G V+ G 
Sbjct: 406 PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGK 465

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YF+ M ++FGI   A H++C++DLLGRA +L EA  LIE +P +P    W ALL  CRI
Sbjct: 466 IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRI 525

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H NVEL   AANRLL+L+      Y +L+NIY++ GR +D A +R LM+  GVKK+PGCS
Sbjct: 526 HGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCS 585

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD----EEK 759
           W++       F   D  HP  +KI E L  ++++IK +GY P+   AL   DD     E+
Sbjct: 586 WIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREE 645

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
              L  HSEKLA+++G+++T  G PI + KNLRIC DCH+AI +IS ++  EI +RDS+R
Sbjct: 646 ELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHR 705

Query: 820 FHHFKEGSCTCKGYW 834
           FH FK+G C+C GYW
Sbjct: 706 FHCFKDGQCSCGGYW 720



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 145/562 (25%), Positives = 243/562 (43%), Gaps = 92/562 (16%)

Query: 14  KTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHL 73
           +T  +L+ L+  IK F  T+T       LL  +C+ L+    +       +      + L
Sbjct: 25  RTGKSLHALY--IKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH--THDCNVFSFNTL 80

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           I+AY   +    A  L   + P P SV  +N LI    R      AF+LFL+M       
Sbjct: 81  ISAYAKESYVEVAHQLFDEM-PQPDSV-SYNTLIAAYARRGDTQPAFQLFLEMREAFLDM 138

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D +T   ++ ACG   +      +HA+   +G DS V V NAL+  Y++   L  AR++F
Sbjct: 139 DGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIF 196

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSAC 250
             + +    D VSWN++V AY Q  +    L L+  MT    V+G   D  +L + L+A 
Sbjct: 197 HWLSEDR--DEVSWNSMVVAYMQHREGSKALELYLEMT----VRGLIVDIFTLASVLTAF 250

Query: 251 ASLGTWSRGKQ--------------------------C-GMMEEAKKVFERMKVKDVVSW 283
            ++     G Q                          C G M + +KVF+ +   D+V W
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N M++GYS      D                                  EAL+ FRQ+Q 
Sbjct: 311 NTMISGYSLYEDLSD----------------------------------EALECFRQLQV 336

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G  P+  +LV ++S C+++ +   G++ H   +K  +       + + V NALI MY+K
Sbjct: 337 VGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIP-----SNRISVNNALIAMYSK 391

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C ++  A+ +FD +   N    ++  MI  Y+Q+G    +L LF +M +      P   T
Sbjct: 392 CGNLRDAKTLFDTMPEHN--TVSYNSMIAGYAQHGMGFQSLHLFQRMLEMG--FTPTNIT 447

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFD 521
               L ACA    +  G+ I+  +++ ++  + P   +  C+ID+  R+G +  A  + +
Sbjct: 448 FISVLAACAHTGRVEDGK-IYFNMMKQKFG-IEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 522 NLK-QRNVVSWTSLMTGYGMHG 542
            +        W++L+    +HG
Sbjct: 506 TIPFDPGFFFWSALLGACRIHG 527



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 209/444 (47%), Gaps = 31/444 (6%)

Query: 17  LTLNHLFTNIKLFSVT--TTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLI 74
           L +   F ++  F+++   T C  I   L+RQ  +L+ V  +   + V N        LI
Sbjct: 129 LEMREAFLDMDGFTLSGIITAC-GINVGLIRQLHALSVVTGLDSYVSVGNA-------LI 180

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
            +Y  +     A  +   +S     V  WN+++   ++ R    A  L+L+M  RG   D
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEV-SWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC-DTLSYARQLF 193
            +T   VL A   +     G   HA +  SG+  N  V + L+ +Y++C   +   R++F
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVF 299

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           DE+  P   D+V WNT+++ Y+   D     +   R    V  + D  SLV  +SAC+++
Sbjct: 300 DEISNP---DLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNM 356

Query: 254 GTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
            + S+G+Q  G+  +      R+ V      NA++  YS+ G+  DA  LF  M +    
Sbjct: 357 SSPSQGRQVHGLALKLDIPSNRISVN-----NALIAMYSKCGNLRDAKTLFDTMPEH--- 408

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            N V+++++IAGYAQ G G ++L +F++M   G  P  +T +S+L+ CA  G +  GK  
Sbjct: 409 -NTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGK-I 466

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           +   +K+   ++          + +ID+  +   +  A  + + I P +     W+ ++G
Sbjct: 467 YFNMMKQKFGIEPEAGH----FSCMIDLLGRAGKLSEAERLIETI-PFDPGFFFWSALLG 521

Query: 433 SYSQNGGANDALALFPQMFQQDKL 456
           +   +G    A+    ++ Q D L
Sbjct: 522 ACRIHGNVELAIKAANRLLQLDPL 545



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIP---FVANCLIDMYSRSGDIDTARVVFDNLK 524
           L  C     LR G+ +HA  +++     +P   +++N  + +YS+   +  AR VFD+  
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKS----FVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             NV S+ +L++ Y      + AH  FD+M +    PD V++  L+ A +  G      +
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQ 126

Query: 585 YFDSMSKEF 593
            F  M + F
Sbjct: 127 LFLEMREAF 135


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 278/778 (35%), Positives = 420/778 (53%), Gaps = 47/778 (6%)

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           L   P + L+  Y S  AP+  L  L R  P P   F  NAL+R      LP    RL  
Sbjct: 49  LDPAPATSLLLRYASLRAPTGHLLRLFRGFPRP-DRFLRNALLRS-----LPSLRPRLLF 102

Query: 125 QMMRRGWHPDEYTFPFVLKACGEL-------PSSRCGSSVHAVICSSGFDSNVFVCNALM 177
                   PD ++F F   +   L        SS    ++HA+  ++G+ ++ FV +AL 
Sbjct: 103 PC------PDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALA 156

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            +Y     + +AR++FD +  P   D V WNT++A  + S   E     FARM  D  V+
Sbjct: 157 KLYFVLSRVDHARKVFDTVPSP---DTVLWNTLLAGLSGSEAVES----FARMVCDGSVR 209

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D  +L + L A A +   + G+      E   + E   V        +++ YS+ G  E
Sbjct: 210 PDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHV-----LTGLISLYSKCGDVE 264

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A  LF  M     K ++V ++A+I+GY+  G    ++++F ++   GL PN  TLV+L+
Sbjct: 265 SARCLFDMME----KPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALI 320

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
              +  G  LL +  H + +K   + +        V  A+  ++ +   ++ AR  FD +
Sbjct: 321 PVHSPFGHDLLAQCLHGFVLKSGFTANSP------VSTAITTLHCRLNDMESARKAFDTM 374

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  +  +W  MI  Y+QNG    A+ALF QM + +  V+PN  T+S  L ACA+L AL
Sbjct: 375 PEKTME--SWNAMISGYAQNGLTEMAVALFEQMVKLN--VRPNPITISSTLSACAQLGAL 430

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G+ +H  +     E  + +V   LIDMY++ G I  AR +F+ +  +NVVSW +++ G
Sbjct: 431 SLGKWLHRIITEEDLEPNV-YVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAG 489

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           YG+HG G +A   +  M    L P   TFL +LYACSH G+V++G K F SM+ ++ I+ 
Sbjct: 490 YGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINP 549

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGELAANR 656
             EH  C+VDLLGRA +L EA ELI   P     P +W ALL  C +H + +L +LA+ +
Sbjct: 550 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQK 609

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           L EL+ E  G Y LLSN++ +  ++ + A +R   K   + K PG + ++       F  
Sbjct: 610 LFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMA 669

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
           GDR HPQS+ IY  L  L  ++   GY P+T  AL+DV++EEK  ++  HSEKLA+A+G+
Sbjct: 670 GDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGL 729

Query: 777 LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           L+T PGT IRI KNLR+C DCH+A  FIS +    I++RD++RFHHF++G C+C  YW
Sbjct: 730 LSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 287/886 (32%), Positives = 458/886 (51%), Gaps = 112/886 (12%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           L    +L ++  IH  +I   L  +      LI  Y    AP+ +LS+ +R+SP+  +V+
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAK-NVY 72

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            WN++IR   +      A   + ++      PD+YTFP V+KAC  L  +  G  V+  I
Sbjct: 73  IWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQI 132

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              GF+S+++V NAL+ MY+R   LS ARQ+FDEM    + D+VSWN++++ Y+  G  E
Sbjct: 133 LEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEM---PVRDLVSWNSLISGYSSHGYYE 189

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-----------------QCGM 264
             L ++  +     V  D  ++ + L A A+L    +G+                   G+
Sbjct: 190 EALEIYHELRNSWIVP-DSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGL 248

Query: 265 M---------EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
           +          +A++VF+ M V+D V++N M+ GY ++   E++  +F +   +  K ++
Sbjct: 249 LAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDI 307

Query: 316 VTWSAVIAG-----------------------------------YAQRGHGHEALDVFRQ 340
           +T ++V+                                     YA+ G    A DVF  
Sbjct: 308 LTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNS 367

Query: 341 MQ-------------------------------FCGLEPNVVTLVSLLSGCASVGALLLG 369
           M+                                   + + +T + L+S    +  L  G
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFG 427

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           K  H   IK  + +      DL V NALIDMYAKC  V  +  +F+++     D  TW  
Sbjct: 428 KGLHSNGIKSGIYI------DLSVSNALIDMYAKCGEVGDSLKIFNSMG--TLDTVTWNT 479

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I +  + G     L +  QM +++K+V P+  T    L  CA LAA R G++IH  +LR
Sbjct: 480 VISACVRFGDFATGLQVTTQM-RKNKVV-PDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
             YE  +  + N LI+MYS+ G ++++  VF+ + +R+VV+WT ++  YGM+G G+KA  
Sbjct: 538 FGYESELQ-IGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALE 596

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
           +F  M K G+ PD V F+ L+YACSHSG+V++GL  F+ M   + I    EHYAC+VDLL
Sbjct: 597 SFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLL 656

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
            R+ ++ +A E I+ MP+EP   IW ++L  CR   ++E  E  + R++EL  +  G   
Sbjct: 657 SRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSI 716

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           L SN YA   +W  V+ IR  ++   +KK PG SW++  +    F  GD + PQS+ I++
Sbjct: 717 LASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHK 776

Query: 730 ILAGLVQRIKAMGYVPQTSFALHDV-DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
            L  L   +   GY+P +     ++ ++EEK  L+  HSE+LA+A+G+L T PGTP+++ 
Sbjct: 777 SLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVM 836

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCH     IS I+  EI++RD+NRFH FK+G C+CK  W
Sbjct: 837 KNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/581 (41%), Positives = 354/581 (60%), Gaps = 20/581 (3%)

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L  C  LG   +G+    +  A  V        +V  N +V  Y++ G  +DA  +F +M
Sbjct: 94  LKECTRLGKVEQGR----IVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             +++    VTW+A+IAG++Q     +AL +F QM   G +PN  TL SLL    S   L
Sbjct: 150 PTKDM----VTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGL 205

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G + H + +K        +   + V +AL+DMYA+C  +D A++ FD +  K+    +
Sbjct: 206 DPGTQLHAFCLKY------GYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSE--VS 257

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  +I  +++ G    AL L  +M  Q K  +P  FT S  L ACA + AL  G+ +HA+
Sbjct: 258 WNALISGHARKGEGEHALHLLWKM--QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAH 315

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           ++++  + LI F+ N L+DMY+++G ID A+ VFD L + +VVSW +++TG   HGLG +
Sbjct: 316 MIKSGLK-LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
               F+QM + G+ P+ ++FL +L ACSHSG++D+GL YF+ M K++ +     HY   V
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFV 433

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DLLGR   LD A   I  MP+EPT  +W ALL  CR+H N+ELG  AA R  EL+    G
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSG 493

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
              LLSNIYA+AGRW+DVA++R +MK +GVKK+P CSWV+ +     F   D THP+ ++
Sbjct: 494 PRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKE 553

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           I      +  +IK +GYVP TS  L  VD +E+ + L  HSEKLALA+ +L T  G+PIR
Sbjct: 554 IRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIR 613

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           I KN+R+CGDCH+AI F+S +++ EII+RD+NRFH F++GS
Sbjct: 614 IKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 201/455 (44%), Gaps = 70/455 (15%)

Query: 35  PCIKITSLLLRQCKSLTQV---YLIHQQIIVQNLTHVPPSHLIAAYVSHN--APSPALSL 89
           P   + S LL++C  L +V    ++H  ++    +H   +HL+   +  N  A    L  
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVD---SHFLDNHLVLQNIIVNMYAKCGCLDD 141

Query: 90  LQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146
            +R+    P+   +  W ALI    +   P +A  LF QM+R G+ P+ +T   +LKA G
Sbjct: 142 ARRMFDEMPTK-DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASG 200

Query: 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS 206
                  G+ +HA     G+ S+V+V +AL+ MYARC  +  A+  FD M  P   + VS
Sbjct: 201 SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM--PTKSE-VS 257

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------ 260
           WN +++ +A+ G+ E  L L  +M      Q    +  + LSACAS+G   +GK      
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRK-NFQPTHFTYSSVLSACASIGALEQGKWVHAHM 316

Query: 261 --------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAF 300
                               + G +++AK+VF+R+   DVVSWN M+TG ++ G  ++  
Sbjct: 317 IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETL 376

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
             F++M +  ++ N +++  V+   +  G   E L  F  M+   +EP+V   VT V LL
Sbjct: 377 DRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLL 436

Query: 358 ------------------SGCASVGALLLGK-------ETHCYTIKRVLSVDGSHPDDLM 392
                                A+V   LLG        E   Y  +R   +D       M
Sbjct: 437 GRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRM 496

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           +++ +     + + V   R M      K +   +W
Sbjct: 497 LLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSW 531



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 17/267 (6%)

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           SQ+ G     AL   + Q+  LV P+    S  L  C RL  +  GR +HA+++ + +  
Sbjct: 64  SQSDGGTGLYAL--DLIQRGSLV-PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLD 120

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
               + N +++MY++ G +D AR +FD +  +++V+WT+L+ G+  +     A   F QM
Sbjct: 121 NHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM 180

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
            + G  P+  T   LL A      +D G +   +   ++G  +     + +VD+  R   
Sbjct: 181 LRLGFQPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGH 239

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLS 672
           +D A    +GMP + + + W AL++G   HA    GE A + L +++ +  +   +T  S
Sbjct: 240 MDAAQLAFDGMPTK-SEVSWNALISG---HARKGEGEHALHLLWKMQRKNFQPTHFTYSS 295

Query: 673 NIYANA-------GRWKDVARIRSLMK 692
            + A A       G+W     I+S +K
Sbjct: 296 VLSACASIGALEQGKWVHAHMIKSGLK 322


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/684 (37%), Positives = 398/684 (58%), Gaps = 34/684 (4%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           HA++  +    N    + L++  A   +  L+YAR+LF +M  P   D    NT++  YA
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNP---DPFICNTMIRGYA 87

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFE 273
           +S +    + L+  M  +  V  D  +    L+ACA LG    G++  C +++       
Sbjct: 88  RSQNPYEAVSLYYFMV-ERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG--- 143

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                D+   NA++  Y   GSF  A  +F     E+   +VVTW+ +I  +  +G   +
Sbjct: 144 ----SDLFVINALIQFYHNCGSFGCACDVF----DESTVRDVVTWNIMINAHLNKGLSEK 195

Query: 334 ALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           A D+  +M +   L P+ VT+VSL+  CA +G L  GK  H Y+  + L +D    ++L 
Sbjct: 196 AFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYS--KELGLD----ENLR 249

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V NA++DMY KC  ++ A+ +F+ I  + +DV +WT M+   +++G   +ALALF +M  
Sbjct: 250 VNNAILDMYCKCDDIESAQEVFNRI--REKDVLSWTSMLSGLAKSGYFQEALALFQKM-- 305

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSG 511
           Q   ++ +  TL   L ACA+  AL  G+ IH  +L +++E+    V    L+DMY++ G
Sbjct: 306 QLNKIELDEITLVGVLSACAQTGALDQGKYIH--LLIDKFEINCDLVLETALVDMYAKCG 363

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ID A  VF  ++ RNV +W +L+ G  MHG G+ A   FDQM  + L PD VTF+ LL 
Sbjct: 364 SIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLC 423

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSH+G+VD+GL  F +M  +F I  R EHY C+VDLL RA ++D+A+  IE MP++   
Sbjct: 424 ACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS 483

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
           ++W  LL  CR   + +L E    R++ELE +  G Y +LSN+YA   +W    ++R  M
Sbjct: 484 VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQM 543

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA-MGYVPQTSFA 750
           K+ G++K PGCSW++       F  GDR+H Q+++IY ++  + +R+    G+VP T+  
Sbjct: 544 KNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANV 603

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           L D+++EEK   LF HSEKLA+A G+++T  G+PIRI KNLR+C DCHS +   S + N 
Sbjct: 604 LFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNR 663

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EI+ RD +RFHHFKEGSC+C  +W
Sbjct: 664 EIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 161/539 (29%), Positives = 266/539 (49%), Gaps = 89/539 (16%)

Query: 33  TTPCIKITSL--LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAY-VSHNAP-SPA 86
           ++ C K+ S+  L   C S+++    H  ++  +L H P   S LI+   +SH+   + A
Sbjct: 5   SSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYA 64

Query: 87  LSLLQRI-SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
             L  ++ +P PF     N +IR   R + P  A  L+  M+ RG   D YT+PFVL AC
Sbjct: 65  RKLFTQMQNPDPFIC---NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
             L + + G   H  +  +GF S++FV NAL+  Y  C +   A  +FDE     + D+V
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDE---STVRDVV 178

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----- 260
           +WN ++ A+   G +E    L   MT    ++ D V++V+ + ACA LG   RGK     
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238

Query: 261 ---------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                +C  +E A++VF R++ KDV+SW +M++G ++ G F++A
Sbjct: 239 SKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEA 298

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
            ALF+KM+   ++L+ +T                                   LV +LS 
Sbjct: 299 LALFQKMQLNKIELDEIT-----------------------------------LVGVLSA 323

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA  GAL  GK  H    K  ++       DL++  AL+DMYAKC S+D+A  +F  +  
Sbjct: 324 CAQTGALDQGKYIHLLIDKFEINC------DLVLETALVDMYAKCGSIDLALQVFRRM-- 375

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           + R+V TW  +IG  + +G   DA++LF QM + DKL+ P+  T    L AC+    +  
Sbjct: 376 RVRNVFTWNALIGGLAMHGHGEDAISLFDQM-EHDKLM-PDDVTFIALLCACSHAGLVDE 433

Query: 480 GRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLM 535
           G  +    ++N+++ + P + +  C++D+  R+  +D A    +N+  + N V W +L+
Sbjct: 434 GLAMFQ-AMKNKFQ-IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 490


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/725 (35%), Positives = 399/725 (55%), Gaps = 25/725 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++     +    + +FR+F  M R     +  T   +L   G +   + G  +H ++ 
Sbjct: 212 WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVV 271

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFDS V VCN L+ MYA       A  +F +M      D++SWN+++A++   G +  
Sbjct: 272 KMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK---DLISWNSLMASFVNDGRSLD 328

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L L   M    K   + V+  +AL+AC +   + +G+    +     +F    +     
Sbjct: 329 ALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIG---- 383

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA+V+ Y +IG   ++  +  +M + +V    V W+A+I GYA+     +AL  F+ M+
Sbjct: 384 -NALVSMYGKIGEMSESRRVLLQMPRRDV----VAWNALIGGYAEDEDPDKALAAFQTMR 438

Query: 343 FCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             G+  N +T+VS+LS C   G LL  GK  H Y       V      D  V N+LI MY
Sbjct: 439 VEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI------VSAGFESDEHVKNSLITMY 492

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC  +  ++ +F+ +   NR++ TW  M+ + + +G   + L L  +M  +   V  + 
Sbjct: 493 AKCGDLSSSQDLFNGL--DNRNIITWNAMLAANAHHGHGEEVLKLVSKM--RSFGVSLDQ 548

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F+ S  L A A+LA L  G+Q+H   ++  +E    F+ N   DMYS+ G+I     +  
Sbjct: 549 FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEH-DSFIFNAAADMYSKCGEIGEVVKMLP 607

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
               R++ SW  L++  G HG  ++    F +M + G+ P  VTF+ LL ACSH G+VD+
Sbjct: 608 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 667

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           GL Y+D ++++FG+    EH  C++DLLGR+ RL EA   I  MPM+P  ++W +LL  C
Sbjct: 668 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 727

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           +IH N++ G  AA  L +LE E D  Y L SN++A  GRW+DV  +R  M    +KK+  
Sbjct: 728 KIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 787

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSWV+ K+  ++F +GDRTHPQ+ +IY  L  + + IK  GYV  TS AL D D+E+K  
Sbjct: 788 CSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEH 847

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L+ HSE+LALAY +++T  G+ +RI KNLRIC DCHS   F+S +I   I+LRD  RFH
Sbjct: 848 NLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFH 907

Query: 822 HFKEG 826
           HF+ G
Sbjct: 908 HFERG 912



 Score =  169 bits (427), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 159/669 (23%), Positives = 280/669 (41%), Gaps = 114/669 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVI 161
           WN ++   VR+ L       F +M   G  P  +    ++ ACG   S  R G  VH  +
Sbjct: 9   WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFV 68

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             SG  S+V+V  A++ +Y     +S +R++F+EM      ++VSW +++  Y+  G+ E
Sbjct: 69  AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDR---NVVSWTSLMVGYSDKGEPE 125

Query: 222 GGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQC------------------ 262
             + ++  M G+ V    + +SLV  +S+C  L   S G+Q                   
Sbjct: 126 EVIDIYKGMRGEGVGCNENSMSLV--ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENS 183

Query: 263 --------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                   G ++ A  +F++M  +D +SWN++   Y++ G  E++F +F  MR+ + ++N
Sbjct: 184 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVN 243

Query: 315 VVT---------------WSAVIAG--------------------YAQRGHGHEALDVFR 339
             T               W   I G                    YA  G   EA  VF+
Sbjct: 244 STTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFK 303

Query: 340 QMQ--------------------------FC-----GLEPNVVTLVSLLSGCASVGALLL 368
           QM                            C     G   N VT  S L+ C +      
Sbjct: 304 QMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEK 363

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G+  H   +     V G   + + + NAL+ MY K   +  +R +   +    RDV  W 
Sbjct: 364 GRILHGLVV-----VSGLFYNQI-IGNALVSMYGKIGEMSESRRVL--LQMPRRDVVAWN 415

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA-ALRFGRQIHAYV 487
            +IG Y+++   + ALA F  M  +   V  N  T+   L AC      L  G+ +HAY+
Sbjct: 416 ALIGGYAEDEDPDKALAAFQTMRVEG--VSSNYITVVSVLSACLLPGDLLERGKPLHAYI 473

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +   +E     V N LI MY++ GD+ +++ +F+ L  RN+++W +++     HG G++ 
Sbjct: 474 VSAGFES-DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEV 532

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
                +MR  G++ D  +F   L A +   ++++G +    ++ + G    +  +    D
Sbjct: 533 LKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEG-QQLHGLAVKLGFEHDSFIFNAAAD 591

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           +  +   + E V+++        P  W  L++    H   E      + +LE+   K G 
Sbjct: 592 MYSKCGEIGEVVKMLPPSVNRSLP-SWNILISALGRHGYFEEVCATFHEMLEM-GIKPGH 649

Query: 668 YTLLSNIYA 676
            T +S + A
Sbjct: 650 VTFVSLLTA 658



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 195/463 (42%), Gaps = 76/463 (16%)

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR-GKQC- 262
           VSWNT+++   + G    G+  F +M  D+ ++     + + ++AC   G+  R G Q  
Sbjct: 7   VSWNTMMSGIVRVGLYLEGMEFFRKMC-DLGIKPSSFVIASLVTACGRSGSMFREGVQVH 65

Query: 263 -------------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
                                    G++  ++KVFE M  ++VVSW +++ GYS  G  E
Sbjct: 66  GFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPE 125

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           +   ++K MR E V  N  + S VI+                    CGL  +        
Sbjct: 126 EVIDIYKGMRGEGVGCNENSMSLVISS-------------------CGLLKD-------- 158

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
               S+G  ++G+            V       L V N+LI M     +VD A  +FD +
Sbjct: 159 ---ESLGRQIIGQ-----------VVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQM 204

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
           +   RD  +W  +  +Y+QNG   ++  +F  M +    V  N+ T+S  L     +   
Sbjct: 205 S--ERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV--NSTTVSTLLSVLGHVDHQ 260

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           ++GR IH  V++  ++ ++  V N L+ MY+ +G    A +VF  +  ++++SW SLM  
Sbjct: 261 KWGRGIHGLVVKMGFDSVVC-VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMAS 319

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           +   G    A      M   G + + VTF   L AC      ++G +    +    G+  
Sbjct: 320 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFY 378

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
                  +V + G+   + E+  ++  MP     + W AL+ G
Sbjct: 379 NQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV-VAWNALIGG 420



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL-GKET 372
           N V+W+ +++G  + G   E ++ FR+M   G++P+   + SL++ C   G++   G + 
Sbjct: 5   NEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQV 64

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H +  K  L        D+ V  A++ +Y     V  +R +F+ +   +R+V +WT ++ 
Sbjct: 65  HGFVAKSGL------LSDVYVSTAILHLYGVYGLVSCSRKVFEEMP--DRNVVSWTSLMV 116

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            YS  G   + + ++  M  + + V  N  ++S  + +C  L     GRQI   V+++  
Sbjct: 117 GYSDKGEPEEVIDIYKGM--RGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGL 174

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E  +  V N LI M    G++D A  +FD + +R+ +SW S+   Y  +G  +++   F 
Sbjct: 175 ESKLA-VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS 233

Query: 553 QMRKEGLAPDGVTFLVLLYACSH 575
            MR+     +  T   LL    H
Sbjct: 234 LMRRFHDEVNSTTVSTLLSVLGH 256



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL-RFG 480
           R+  +W  M+    + G   + +  F +M   D  +KP++F ++  + AC R  ++ R G
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMC--DLGIKPSSFVIASLVTACGRSGSMFREG 61

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
            Q+H +V ++   +   +V+  ++ +Y   G +  +R VF+ +  RNVVSWTSLM GY  
Sbjct: 62  VQVHGFVAKSGL-LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
            G  ++    +  MR EG+  +  +  +++ +C        G +    + K  G+ ++  
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS-GLESKLA 179

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
               ++ +LG    +D A  + + M  E   I W
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMS-ERDTISW 212



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WNA++         +   +L  +M   G   D+++F   L A  +L     G  +H
Sbjct: 512 NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH 571

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQS 217
            +    GF+ + F+ NA   MY++C  +    +    M  P +   + SWN +++A  + 
Sbjct: 572 GLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVK----MLPPSVNRSLPSWNILISALGRH 627

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
           G  E     F  M  ++ ++   V+ V+ L+AC+  G   +G
Sbjct: 628 GYFEEVCATFHEML-EMGIKPGHVTFVSLLTACSHGGLVDKG 668


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/809 (32%), Positives = 403/809 (49%), Gaps = 107/809 (13%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
             +F ++  +G   D      VLK C  L     G  VHA +   GF  +V +  AL+ +
Sbjct: 116 LEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINL 175

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y +C  +  A Q+FDE   P   D + WNTIV A  +S   E  L L  RM        D
Sbjct: 176 YEKCLGIDRANQVFDE--TPLQEDFL-WNTIVMANLRSERWEDALELSRRMQSASAKATD 232

Query: 240 GVSLVNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFE 273
           G ++V  L AC  L   + GKQ                             +E A+ VF+
Sbjct: 233 G-TIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFD 291

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             +  ++ SWN++++ Y+  G    A+ LF++M   ++K +++TW+++++G+  +G    
Sbjct: 292 STEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYEN 351

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
            L   R +Q  G +P+  ++ S L     +G   LGKE H Y ++  L        D+ V
Sbjct: 352 VLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEY------DVYV 405

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKN-------------------------------- 421
             +L+DMY K   ++ A V+F     KN                                
Sbjct: 406 CTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGI 465

Query: 422 -RDVATWTVMIGSYSQNGGANDALAL---------------------------------- 446
             D+ TW  ++  YS +G + +ALA+                                  
Sbjct: 466 KADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQ 525

Query: 447 -FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
            F QM +++  VKPN+ T+S  L ACA  + L+ G +IH + +++ +   I ++A  LID
Sbjct: 526 FFSQMQEEN--VKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDI-YIATALID 582

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MYS+ G +  A  VF N+K++ +  W  +M GY ++G G++    FD M K G+ PD +T
Sbjct: 583 MYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAIT 642

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F  LL  C +SG+V  G KYFDSM  ++ I+   EHY+C+VDLLG+A  LDEA++ I  M
Sbjct: 643 FTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAM 702

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P +    IW A+L  CR+H ++++ E+AA  L  LE     +Y L+ NIY+   RW DV 
Sbjct: 703 PQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVE 762

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           R++  M   GVK     SW+Q ++    F    ++HP+  +IY  L  L+  IK +GYVP
Sbjct: 763 RLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVP 822

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T+    ++DD EK  +L  H+EKLA+ YG++    GTPIR+ KN RIC DCH+A  +IS
Sbjct: 823 DTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYIS 882

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +  N EI LRD  RFHHF  G C+C   W
Sbjct: 883 LARNREIFLRDGGRFHHFMNGECSCNDRW 911



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 147/299 (49%), Gaps = 21/299 (7%)

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGHEALDVFRQMQF 343
           +M+  Y   G FE A  +F          N + W++ +  +A   G  HE L+VF+++  
Sbjct: 69  SMMRNYLEFGDFESATKVFFV----GFARNYLLWNSFLEEFASFGGDSHEILEVFKELHD 124

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G++ +   L  +L  C ++  L LG E H   +KR   V      D+ +  ALI++Y K
Sbjct: 125 KGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQV------DVHLSCALINLYEK 178

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +D A  +FD   P   D   W  ++ +  ++    DAL L  +M  Q    K    T
Sbjct: 179 CLGIDRANQVFDE-TPLQEDF-LWNTIVMANLRSERWEDALELSRRM--QSASAKATDGT 234

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           +   L AC +L AL  G+QIH YV+R    +    + N ++ MYSR+  ++ AR VFD+ 
Sbjct: 235 IVKLLQACGKLRALNEGKQIHGYVIRFG-RVSNTSICNSIVSMYSRNNRLELARAVFDST 293

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  N+ SW S+++ Y ++G  + A   F +M    + PD +T+  LL     SG + QG
Sbjct: 294 EDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLL-----SGHLLQG 347



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 25/260 (9%)

Query: 73  LIAAYVSHNAPSPALSLLQRISP---SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           L++ Y        AL+++ RI     +P +V  W A+I    +     +A + F QM   
Sbjct: 475 LVSGYSMSGCSEEALAVINRIKSLGLTP-NVVSWTAMISGCCQNENYTDALQFFSQMQEE 533

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
              P+  T   +L+AC      + G  +H      GF  ++++  AL+ MY++   L  A
Sbjct: 534 NVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVA 593

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
            ++F  + +     +  WN ++  YA  G  E    LF  M     ++ D ++    LS 
Sbjct: 594 HEVFRNIKEK---TLPCWNCMMMGYAIYGHGEEVFTLFDNMC-KTGIRPDAITFTALLSG 649

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFK 304
           C         K  G++ +  K F+ MK    ++     ++ MV    + G  ++A     
Sbjct: 650 C---------KNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIH 700

Query: 305 KMRQENVKLNVVTWSAVIAG 324
            M Q   K +   W AV+A 
Sbjct: 701 AMPQ---KADASIWGAVLAA 717


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/519 (43%), Positives = 326/519 (62%), Gaps = 38/519 (7%)

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G++PN  TL +++  CAS+ +L  GK+ H Y IK           D++V  AL+ MYA+C
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKM------GFESDVVVQTALVHMYARC 58

Query: 405 KSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYS 435
            S++ A  +FD ++ ++                             RDV +WT +I  Y+
Sbjct: 59  GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYA 118

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG  +++L +F QM +    +K + F +   L ACA LAAL  GRQ HAYV+++ + + 
Sbjct: 119 QNGYGDESLNVFNQMRKTG--MKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD 176

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           I  V + L+DMY++SG ++ A  VFD + QRN VSW S++TG   HG G+ A   F+QM 
Sbjct: 177 I-VVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQML 235

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
           + G+ P+ ++F+ +L ACSH+G+V++G  YF+ M++ +GI     HY C++DLLGRA  L
Sbjct: 236 QAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCL 295

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           DEA   I GMP+EP   +W ALL  CRIH N EL +  A  LL +E +  G Y LLSNIY
Sbjct: 296 DEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIY 355

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A AG+W D A++R LMK  GV K+PG SW++ K     F  G+ +HPQ ++I+E L  L 
Sbjct: 356 AAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLS 415

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
           +++KA GYVP  +F L DV+D+EK   L  HSEKLA+A+GI+ T PGT IR+ KNLR+CG
Sbjct: 416 RKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCG 475

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH+ I FIS+    +I++RD+NRFHHFK+G C+C  YW
Sbjct: 476 DCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 180/336 (53%), Gaps = 45/336 (13%)

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAK 269
           V+ +  +L   + ACAS+ +  +GKQ                          CG +E+A 
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
            VF++M  +   +WNAM+TG+++    + A  LF +M + +V    V+W+AVIAGYAQ G
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDV----VSWTAVIAGYAQNG 121

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
           +G E+L+VF QM+  G++ +   + S+LS CA + AL LG++ H Y ++   ++      
Sbjct: 122 YGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL------ 175

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           D++V +AL+DMYAK  S++ A  +FD +  +N    +W  +I   +Q+G  NDA+ LF Q
Sbjct: 176 DIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE--VSWNSIITGCAQHGRGNDAVLLFEQ 233

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMY 507
           M Q    +KPN  +    L AC+    +  GR    + L  Q   ++P V++  C+ID+ 
Sbjct: 234 MLQAG--IKPNEISFVGVLSACSHTGLVNEGRGY--FNLMTQNYGIVPDVSHYTCMIDLL 289

Query: 508 SRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
            R+G +D A    + +  + +V  W +L+    +HG
Sbjct: 290 GRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 162/337 (48%), Gaps = 46/337 (13%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+ +G  P+++T   V+KAC  + S   G   H  I   GF+S+V V  AL+ MYARC +
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 186 LSYARQLFDEM----------------------------FQPGICDIVSWNTIVAAYAQS 217
           L  A  +FD+M                            ++    D+VSW  ++A YAQ+
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +  L +F +M     ++ D   + + LSACA L     G+Q         V +    
Sbjct: 121 GYGDESLNVFNQMR-KTGMKSDRFIMGSVLSACADLAALELGRQF-----HAYVVQSGFA 174

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+V  +A+V  Y++ GS EDA  +F KM Q     N V+W+++I G AQ G G++A+ +
Sbjct: 175 LDIVVGSALVDMYAKSGSMEDACQVFDKMPQR----NEVSWNSIITGCAQHGRGNDAVLL 230

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET-HCYTIKRVLSVDGSHPDDLMVINA 396
           F QM   G++PN ++ V +LS C+  G +  G+   +  T    +  D SH         
Sbjct: 231 FEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH------YTC 284

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           +ID+  +   +D A    + + P   DV+ W  ++G+
Sbjct: 285 MIDLLGRAGCLDEAENFINGM-PVEPDVSVWGALLGA 320



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 25/291 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  +  +     AL L   +S     V  W A+I    +    D +  +F QM + G  
Sbjct: 82  MITGHAQNRDMKKALKLFYEMSER--DVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMK 139

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D +    VL AC +L +   G   HA +  SGF  ++ V +AL+ MYA+  ++  A Q+
Sbjct: 140 SDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQV 199

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD+M Q    + VSWN+I+   AQ G     ++LF +M     ++ + +S V  LSAC+ 
Sbjct: 200 FDKMPQR---NEVSWNSIITGCAQHGRGNDAVLLFEQML-QAGIKPNEISFVGVLSACS- 254

Query: 253 LGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                     G++ E +  F  M      V DV  +  M+    R G  ++A      M 
Sbjct: 255 --------HTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMP 306

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
              V+ +V  W A++   A R HG+  L         G+E  +  +  LLS
Sbjct: 307 ---VEPDVSVWGALLG--ACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLS 352


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 269/737 (36%), Positives = 402/737 (54%), Gaps = 86/737 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG----ELPSSRCGSSVH 158
           +NAL+    R RLPD A  LF +M  R    D  ++  ++         LP +       
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSR----DLASYNALISGLSLRRQTLPDAA------ 100

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A + S  F  +V    +L+  Y R   L+ A +LF +M +    + VS+  ++       
Sbjct: 101 AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER---NHVSYTVLL------- 150

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
              GGL+                                     G + EA+++F+ M  +
Sbjct: 151 ---GGLL-----------------------------------DAGRVNEARRLFDEMPDR 172

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DVV+W AM++GY + G   +A ALF +M     K NVV+W+A+I+GYAQ G  + A  +F
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVNLARKLF 228

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M     E N V+  ++L G    G        H      + +    HP  +   NA++
Sbjct: 229 EVMP----ERNEVSWTAMLVGYIQAG--------HVEDAAELFNAMPEHP--VAACNAMM 274

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
             + +   VD A+ +F+ +    RD  TW+ MI +Y QN    +AL+ F +M  +   V+
Sbjct: 275 VGFGQRGMVDAAKTVFEKMC--ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG--VR 330

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  ++   L  CA LA L +GR++HA +LR  ++M + F  + LI MY + G++D A+ 
Sbjct: 331 PNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDV-FAVSALITMYIKCGNLDKAKR 389

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF   + +++V W S++TGY  HGLG++A   F  MR  G++PDG+T++  L ACS++G 
Sbjct: 390 VFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGK 449

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G + F+SM+    I   AEHY+C+VDLLGR+  ++EA +LI+ MP+EP  +IW AL+
Sbjct: 450 VKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR+H N E+ E AA +LLELE    G Y LLS+IY + GRW+D +++R  +    + K
Sbjct: 510 GACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNK 569

Query: 699 RPGCSWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            PGCSW++  +    F  GD   HP+   I  IL  L   +   GY    SF LHD+D+E
Sbjct: 570 SPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEE 629

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +K   L  HSE+ A+AYG+L    G PIR+ KNLR+CGDCHSAI  I+ I + EIILRD+
Sbjct: 630 QKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDA 689

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFHHFK+G C+C+ YW
Sbjct: 690 NRFHHFKDGFCSCRDYW 706



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 227/477 (47%), Gaps = 42/477 (8%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P SV  + +L+R  VR  L  +A RLF QM      P+     + +   G L + R  
Sbjct: 107 PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM------PERNHVSYTVLLGGLLDAGRVN 160

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            +    +     D +V    A+++ Y +   ++ AR LFDEM +    ++VSW  +++ Y
Sbjct: 161 EARR--LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR---NVVSWTAMISGY 215

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           AQ+G+      LF  M              N +S  A L  +    Q G +E+A ++F  
Sbjct: 216 AQNGEVNLARKLFEVMPER-----------NEVSWTAMLVGYI---QAGHVEDAAELFNA 261

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           M    V + NAM+ G+ + G  + A  +F+KM + +      TWSA+I  Y Q     EA
Sbjct: 262 MPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG----TWSAMIKAYEQNEFLMEA 317

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L  FR+M + G+ PN  +++S+L+ CA++  L  G+E H   ++    +      D+  +
Sbjct: 318 LSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM------DVFAV 371

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           +ALI MY KC ++D A+ +F    PK  D+  W  MI  Y+Q+G    AL +F  M    
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPK--DIVMWNSMITGYAQHGLGEQALGIFHDMRLAG 429

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             + P+  T   AL AC+    ++ GR+I   +  N          +C++D+  RSG ++
Sbjct: 430 --MSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 515 TARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            A  +  N+  + + V W +LM    MH   + A +A  ++ +  L P      VLL
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLE--LEPGNAGPYVLL 542



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 182/416 (43%), Gaps = 49/416 (11%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G +E A+  FE M ++   S+NA++ GY R    + A  LF++M       ++ +++A
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR----DLASYNA 84

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL-------------- 366
           +I+G + R       D    +      P+VV+  SLL G    G L              
Sbjct: 85  LISGLSLR--RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERN 142

Query: 367 ------LLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAP 419
                 LLG       +     +    PD D++   A++  Y +   +  AR +FD + P
Sbjct: 143 HVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM-P 201

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           K R+V +WT MI  Y+QNG  N A  LF  M ++++        +S   M    + A   
Sbjct: 202 K-RNVVSWTAMISGYAQNGEVNLARKLFEVMPERNE--------VSWTAMLVGYIQA--- 249

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G    A  L N          N ++  + + G +D A+ VF+ + +R+  +W++++  Y 
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISAR 598
            +    +A   F +M   G+ P+  + + +L  C+   ++D G +   +M +  F +   
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNGCRIHANVELGELA 653
           A   + ++ +  +   LD+A  +      EP  I+ W +++ G   H    LGE A
Sbjct: 370 A--VSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHG---LGEQA 418



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 42/210 (20%)

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N  I   +R+G+I+ AR  F+ +  R   S+ +L+ GY  + L D A   F +M    LA
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 561 -----------------------------PDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
                                        P  V+F  LL      G++   ++ F  M +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
              +S     Y  ++  L  A R++EA  L + MP +   + W A+L+G       + G 
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSG-----YCQAGR 189

Query: 652 LAANRLL--ELESEKDGSYTLLSNIYANAG 679
           +   R L  E+      S+T + + YA  G
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNG 219


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/737 (34%), Positives = 393/737 (53%), Gaps = 34/737 (4%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            +N LI    +    + A  LF +M   G  PD  T   ++ AC    +   G  +HA   
Sbjct: 340  YNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTT 399

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              GF SN  +  AL+ +YA+C  +  A   F    +  + ++V WN ++ AY    D   
Sbjct: 400  KLGFASNDKIEGALLNLYAKCSDIETALNYF---LETEVENVVLWNVMLVAYGLLDDLRN 456

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
               +F +M  + ++  +  +  + L  C  LG    G+Q               +K    
Sbjct: 457  SFRIFRQMQIE-EIVPNQYTYPSILKTCIRLGDLELGEQ----------IHSQIIKTSFQ 505

Query: 283  WNAMVTG-----YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             NA V       Y+++G  + A+ +  +   ++V    V+W+ +IAGY Q     +AL  
Sbjct: 506  LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV----VSWTTMIAGYTQYNFDDKALTT 561

Query: 338  FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            FRQM   G+  + V L + +S CA + AL  G++ H        S       DL   NAL
Sbjct: 562  FRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS------SDLPFQNAL 615

Query: 398  IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
            + +Y+KC +++ A + F+       D   W  ++  + Q+G   +AL +F +M ++   +
Sbjct: 616  VTLYSKCGNIEEAYLAFEQTEAG--DNIAWNALVSGFQQSGNNEEALRVFARMNREG--I 671

Query: 458  KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
              N FT   A+ A +  A ++ G+Q+HA + +  Y+     V N +I MY++ G I  A+
Sbjct: 672  DSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE-VCNAIISMYAKCGSISDAK 730

Query: 518  VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
              F  L  +N VSW +++  Y  HG G +A  +FDQM    + P+ VT + +L ACSH G
Sbjct: 731  KQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIG 790

Query: 578  MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +VD+G++YF+SM+ E+G++ + EHY C+VD+L RA  L  A + I  MP+EP  ++W  L
Sbjct: 791  LVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTL 850

Query: 638  LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
            L+ C +H N+E+GE AA+ LLELE E   +Y LLSN+YA   +W      R  MK  GVK
Sbjct: 851  LSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVK 910

Query: 698  KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
            K PG SW++ K    +F+VGD+ HP + +I+E    L +R   +GYV      L ++  E
Sbjct: 911  KEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQE 970

Query: 758  EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
            +K   +F HSEKLA+++G+L+     PI + KNLR+C DCH  I F+S + N EII+RD+
Sbjct: 971  QKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDA 1030

Query: 818  NRFHHFKEGSCTCKGYW 834
             RFHHF+ G+C+CK YW
Sbjct: 1031 YRFHHFEGGACSCKDYW 1047



 Score =  232 bits (591), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 175/625 (28%), Positives = 290/625 (46%), Gaps = 34/625 (5%)

Query: 27  KLFSVTTTPCIKITSLLLRQCK----SLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSH 80
           ++ +   TP     S +L  C+    +   V  IH +II Q L  + +  + LI  Y  +
Sbjct: 159 RMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRN 218

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
                A  +   +     S   W A+I    +      A RLF  M   G  P  Y F  
Sbjct: 219 GFVDRARRVFDGLYLKDHSS--WVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSS 276

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           VL AC ++ S   G  +H ++   GF S+ +VCNAL+++Y    +L  A  +F  M Q  
Sbjct: 277 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQR- 335

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             D V++NT++   +Q G  E  + LF RM  D  ++ D  +L + + AC+S GT   G+
Sbjct: 336 --DAVTYNTLINGLSQCGYGEKAMELFKRMQLD-GLEPDSNTLASLVVACSSDGTLFSGQ 392

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q              K++      A++  Y++    E A   F +   EN    VV W+ 
Sbjct: 393 QLHAYTTKLGFASNDKIE-----GALLNLYAKCSDIETALNYFLETEVEN----VVLWNV 443

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           ++  Y        +  +FRQMQ   + PN  T  S+L  C  +G L LG++ H   IK  
Sbjct: 444 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTS 503

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             ++        V + LIDMYAK   +D A  +    A K  DV +WT MI  Y+Q    
Sbjct: 504 FQLNA------YVCSVLIDMYAKLGKLDTAWDILIRFAGK--DVVSWTTMIAGYTQYNFD 555

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           + AL  F QM   D+ ++ +   L+ A+ ACA L AL+ G+QIHA    + +   +PF  
Sbjct: 556 DKALTTFRQML--DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF-Q 612

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N L+ +YS+ G+I+ A + F+  +  + ++W +L++G+   G  ++A   F +M +EG+ 
Sbjct: 613 NALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGID 672

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
            +  TF   + A S +  + QG +    ++K  G  +  E    I+ +  +   + +A +
Sbjct: 673 SNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAIISMYAKCGSISDAKK 731

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHA 645
               + M+   + W A++N    H 
Sbjct: 732 QFLELSMK-NEVSWNAMINAYSKHG 755



 Score =  222 bits (566), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 159/551 (28%), Positives = 268/551 (48%), Gaps = 27/551 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSV 157
           ++F WN +I+      L    F LF +M+     P+E TF  VL+AC G   +      +
Sbjct: 133 TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQI 192

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA I   G   +  VCN L+ +Y+R   +  AR++FD ++   + D  SW  +++  +++
Sbjct: 193 HARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLY---LKDHSSWVAMISGLSKN 249

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
                 + LF  M   + +     +  + LSAC  + +   G+Q   +     V +    
Sbjct: 250 ECEVEAIRLFCDMYV-LGIMPTPYAFSSVLSACKKIESLEIGEQLHGL-----VLKLGFS 303

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D    NA+V+ Y  +GS   A  +F  M Q     + VT++ +I G +Q G+G +A+++
Sbjct: 304 SDTYVCNALVSLYFHLGSLISAEHIFSNMSQR----DAVTYNTLINGLSQCGYGEKAMEL 359

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++MQ  GLEP+  TL SL+  C+S G L  G++ H YT K      G   +D  +  AL
Sbjct: 360 FKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL-----GFASND-KIEGAL 413

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +++YAKC  ++ A   F  +  +  +V  W VM+ +Y       ++  +F QM  Q + +
Sbjct: 414 LNLYAKCSDIETALNYF--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM--QIEEI 469

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            PN +T    L  C RL  L  G QIH+ +++  ++ L  +V + LIDMY++ G +DTA 
Sbjct: 470 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQ-LNAYVCSVLIDMYAKLGKLDTAW 528

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +      ++VVSWT+++ GY  +   DKA   F QM   G+  D V     + AC+   
Sbjct: 529 DILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 588

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            + +G +   + +   G S+       +V L  +   ++EA    E        I W AL
Sbjct: 589 ALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN-IAWNAL 646

Query: 638 LNGCRIHANVE 648
           ++G +   N E
Sbjct: 647 VSGFQQSGNNE 657



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 233/505 (46%), Gaps = 47/505 (9%)

Query: 130 GWHPDEYTFPFVLKACGELPSS-RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
           G  P+  T  ++L+ C +   S   G  +H+ I   GFD+N  +   L+  Y     L  
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           A ++FDEM +     I +WN ++   A    +     LF RM  +     +G +    L 
Sbjct: 122 ALKVFDEMPER---TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEG-TFSGVLE 177

Query: 249 ACASLGTWSRGKQCG--MMEE--AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           AC       RG      ++E+  A+ +++ +  K  +  N ++  YSR G  + A  +F 
Sbjct: 178 AC-------RGGSVAFDVVEQIHARIIYQGLG-KSTIVCNPLIDLYSRNGFVDRARRVFD 229

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            +  ++      +W A+I+G ++     EA+ +F  M   G+ P      S+LS C  + 
Sbjct: 230 GLYLKDHS----SWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           +L +G++ H   +K   S       D  V NAL+ +Y    S+  A  +F  ++   RD 
Sbjct: 286 SLEIGEQLHGLVLKLGFS------SDTYVCNALVSLYFHLGSLISAEHIFSNMS--QRDA 337

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            T+  +I   SQ G    A+ LF +M Q D L +P++ TL+  ++AC+    L  G+Q+H
Sbjct: 338 VTYNTLINGLSQCGYGEKAMELFKRM-QLDGL-EPDSNTLASLVVACSSDGTLFSGQQLH 395

Query: 485 AYVLRNQYEMLIPFVAN-----CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           AY  +      + F +N      L+++Y++  DI+TA   F   +  NVV W  ++  YG
Sbjct: 396 AYTTK------LGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYG 449

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           +      +   F QM+ E + P+  T+  +L  C   G ++ G +    + K    S + 
Sbjct: 450 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TSFQL 506

Query: 600 EHYAC--IVDLLGRANRLDEAVELI 622
             Y C  ++D+  +  +LD A +++
Sbjct: 507 NAYVCSVLIDMYAKLGKLDTAWDIL 531



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 25/304 (8%)

Query: 344 CGLEPNVVTLVSLLSGCASV-GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           CG+ PN  TL  LL GC    G+L  G++ H   +K  L  D    ++  +   L+D Y 
Sbjct: 61  CGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK--LGFD----NNACLSEKLLDFYL 114

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
               +D A  +FD +    R + TW  MI   +    +     LF +M  ++  V PN  
Sbjct: 115 FKGDLDGALKVFDEMPE--RTIFTWNKMIKELASRSLSGKVFCLFGRMVNEN--VTPNEG 170

Query: 463 TLSCALMACARLAALRFG--RQIHAYVLRNQYEML--IPFVANCLIDMYSRSGDIDTARV 518
           T S  L AC R  ++ F    QIHA ++   Y+ L     V N LID+YSR+G +D AR 
Sbjct: 171 TFSGVLEAC-RGGSVAFDVVEQIHARII---YQGLGKSTIVCNPLIDLYSRNGFVDRARR 226

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD L  ++  SW ++++G   +    +A   F  M   G+ P    F  +L AC     
Sbjct: 227 VFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIES 286

Query: 579 VDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           ++ G +    +  + G S  ++ Y C  +V L      L  A  +   M  +   + +  
Sbjct: 287 LEIG-EQLHGLVLKLGFS--SDTYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNT 342

Query: 637 LLNG 640
           L+NG
Sbjct: 343 LING 346


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/589 (41%), Positives = 352/589 (59%), Gaps = 21/589 (3%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A++AC        G+Q      A+ +  R +   V     +VT Y R G+ +DA  +  +
Sbjct: 48  AITACIERRALWEGRQV----HARMITARYR-PAVFLGTRLVTMYVRCGALDDARNVLDR 102

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +V    V+W+ +I+GY+Q     EALD+F +M   G  PN  TL ++L+ C+   +
Sbjct: 103 MPERSV----VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQS 158

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           +  GK+ H   +K       SH   + V ++L+DMYAK +++  AR +FD +    RDV 
Sbjct: 159 IYQGKQVHSLLVKTNFE---SH---MFVGSSLLDMYAKSENIQEARRVFDTLP--ERDVV 210

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           + T +I  Y+Q G   +AL LF Q++ +   ++ N  T +  + A + LA+L +G+Q+HA
Sbjct: 211 SCTAIISGYAQKGLDEEALDLFRQLYSEG--MQCNHVTFTTLVTALSGLASLDYGKQVHA 268

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            +LR +    +  + N LIDMYS+ G +  +R VFDN+ +R+VVSW +++ GYG HGLG 
Sbjct: 269 LILRKELPFFVA-LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGH 327

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +    F  + KE + PD VT L +L  CSH G+VD+GL  FD++ KE        HY CI
Sbjct: 328 EVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCI 386

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           +DLLGR+ RL++A+ LIE MP E TP IW +LL  CR+HANV +GEL A +LLE+E E  
Sbjct: 387 IDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENA 446

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y +LSNIYA AG WKDV ++R LM    V K PG SW+   +   TF   +R HP  +
Sbjct: 447 GNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKK 506

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
            I   +  +   IKA G+VP  S  LHDVDDE+K  +L  HSEKLA+ +G++ T PG  I
Sbjct: 507 DINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTI 566

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+ KNLRIC DCH+   F+S +   EI LRD NRFH    G+CTC  YW
Sbjct: 567 RVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 201/434 (46%), Gaps = 77/434 (17%)

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           + +   + AC E  +   G  VHA + ++ +   VF+   L+ MY RC  L  AR + D 
Sbjct: 43  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 102

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M +     +VSW T+++ Y+Q+      L LF +M     +  +  +L   L++C+   +
Sbjct: 103 MPERS---VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE-YTLATVLTSCSGPQS 158

Query: 256 WSRGKQCGMM--------------------------EEAKKVFERMKVKDVVSWNAMVTG 289
             +GKQ   +                          +EA++VF+ +  +DVVS  A+++G
Sbjct: 159 IYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISG 218

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G  E+A  LF+++  E ++ N VT++                              
Sbjct: 219 YAQKGLDEEALDLFRQLYSEGMQCNHVTFT------------------------------ 248

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             TLV+ LSG AS   L  GK+ H   +++ L      P  + + N+LIDMY+KC  +  
Sbjct: 249 --TLVTALSGLAS---LDYGKQVHALILRKEL------PFFVALQNSLIDMYSKCGKLLY 297

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +R +FD +    R V +W  M+  Y ++G  ++ ++LF  + ++   VKP++ TL   L 
Sbjct: 298 SRRVFDNML--ERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE---VKPDSVTLLAVLS 352

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            C+    +  G  I   V++ Q  +L      C+ID+  RSG ++ A  + +N+   +  
Sbjct: 353 GCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTP 412

Query: 530 S-WTSLMTGYGMHG 542
           S W SL+    +H 
Sbjct: 413 SIWGSLLGACRVHA 426



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 33/294 (11%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  YV   A   A ++L R+     SV  W  +I    +      A  LF++M+R G
Sbjct: 81  TRLVTMYVRCGALDDARNVLDRMPER--SVVSWTTMISGYSQTERHVEALDLFIKMLRAG 138

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P+EYT   VL +C    S   G  VH+++  + F+S++FV ++L+ MYA+ + +  AR
Sbjct: 139 CIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEAR 198

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD + +    D+VS   I++ YAQ G  E  L LF ++  +  +Q + V+    ++A 
Sbjct: 199 RVFDTLPER---DVVSCTAIISGYAQKGLDEEALDLFRQLYSE-GMQCNHVTFTTLVTAL 254

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           + L +   GKQ                          CG +  +++VF+ M  + VVSWN
Sbjct: 255 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 314

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           AM+ GY R G   +  +LFK + +E VK + VT  AV++G +  G   E LD+F
Sbjct: 315 AMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIF 367


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/589 (41%), Positives = 352/589 (59%), Gaps = 21/589 (3%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A++AC        G+Q      A+ +  R +   V     +VT Y R G+ +DA  +  +
Sbjct: 16  AITACIERRALWEGRQV----HARMITARYR-PAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +V    V+W+ +I+GY+Q     EALD+F +M   G  PN  TL ++L+ C+   +
Sbjct: 71  MPERSV----VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQS 126

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           +  GK+ H   +K       SH   + V ++L+DMYAK +++  AR +FD +    RDV 
Sbjct: 127 IYQGKQVHSLLVKTNFE---SH---MFVGSSLLDMYAKSENIQEARRVFDTLP--ERDVV 178

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           + T +I  Y+Q G   +AL LF Q++ +   ++ N  T +  + A + LA+L +G+Q+HA
Sbjct: 179 SCTAIISGYAQKGLDEEALDLFRQLYSEG--MQCNHVTFTTLVTALSGLASLDYGKQVHA 236

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            +LR +    +  + N LIDMYS+ G +  +R VFDN+ +R+VVSW +++ GYG HGLG 
Sbjct: 237 LILRKELPFFVA-LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGH 295

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +    F  + KE + PD VT L +L  CSH G+VD+GL  FD++ KE        HY CI
Sbjct: 296 EVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCI 354

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           +DLLGR+ RL++A+ LIE MP E TP IW +LL  CR+HANV +GEL A +LLE+E E  
Sbjct: 355 IDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENA 414

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y +LSNIYA AG WKDV ++R LM    V K PG SW+   +   TF   +R HP  +
Sbjct: 415 GNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKK 474

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
            I   +  +   IKA G+VP  S  LHDVDDE+K  +L  HSEKLA+ +G++ T PG  I
Sbjct: 475 DINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTI 534

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+ KNLRIC DCH+   F+S +   EI LRD NRFH    G+CTC  YW
Sbjct: 535 RVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 201/434 (46%), Gaps = 77/434 (17%)

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           + +   + AC E  +   G  VHA + ++ +   VF+   L+ MY RC  L  AR + D 
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M +     +VSW T+++ Y+Q+      L LF +M     +  +  +L   L++C+   +
Sbjct: 71  MPERS---VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE-YTLATVLTSCSGPQS 126

Query: 256 WSRGKQCGMM--------------------------EEAKKVFERMKVKDVVSWNAMVTG 289
             +GKQ   +                          +EA++VF+ +  +DVVS  A+++G
Sbjct: 127 IYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISG 186

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G  E+A  LF+++  E ++ N VT++                              
Sbjct: 187 YAQKGLDEEALDLFRQLYSEGMQCNHVTFT------------------------------ 216

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             TLV+ LSG AS   L  GK+ H   +++ L      P  + + N+LIDMY+KC  +  
Sbjct: 217 --TLVTALSGLAS---LDYGKQVHALILRKEL------PFFVALQNSLIDMYSKCGKLLY 265

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +R +FD +    R V +W  M+  Y ++G  ++ ++LF  + ++   VKP++ TL   L 
Sbjct: 266 SRRVFDNML--ERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE---VKPDSVTLLAVLS 320

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            C+    +  G  I   V++ Q  +L      C+ID+  RSG ++ A  + +N+   +  
Sbjct: 321 GCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTP 380

Query: 530 S-WTSLMTGYGMHG 542
           S W SL+    +H 
Sbjct: 381 SIWGSLLGACRVHA 394



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 33/294 (11%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  YV   A   A ++L R+     SV  W  +I    +      A  LF++M+R G
Sbjct: 49  TRLVTMYVRCGALDDARNVLDRMPER--SVVSWTTMISGYSQTERHVEALDLFIKMLRAG 106

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P+EYT   VL +C    S   G  VH+++  + F+S++FV ++L+ MYA+ + +  AR
Sbjct: 107 CIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEAR 166

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD + +    D+VS   I++ YAQ G  E  L LF ++  +  +Q + V+    ++A 
Sbjct: 167 RVFDTLPER---DVVSCTAIISGYAQKGLDEEALDLFRQLYSE-GMQCNHVTFTTLVTAL 222

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           + L +   GKQ                          CG +  +++VF+ M  + VVSWN
Sbjct: 223 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 282

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           AM+ GY R G   +  +LFK + +E VK + VT  AV++G +  G   E LD+F
Sbjct: 283 AMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIF 335


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/541 (43%), Positives = 331/541 (61%), Gaps = 16/541 (2%)

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           S + A  LF ++ Q ++    V ++ +  GYA+      A  +F Q+ F GL P+  T  
Sbjct: 70  SMQHAHHLFDQIPQPDI----VLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFP 125

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SLL  CAS  AL  G++ HC  IK  LS      +++ V   LI+MY  C  +D AR +F
Sbjct: 126 SLLKACASCKALEEGRQLHCLAIKLGLS------ENVYVCPTLINMYTACNEMDCARRVF 179

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D I      V T+  MI  Y++    N+AL+LF ++  Q + +KP   T+   L +CA L
Sbjct: 180 DKIWEPC--VVTYNAMITGYARGSRPNEALSLFREL--QARNLKPTDVTMLSVLSSCALL 235

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            AL  G+ +H YV +N +   +  V   LIDMY++ G +D A  VF+N+  R+  +W+++
Sbjct: 236 GALDLGKWMHEYVKKNGFNRFVK-VDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAM 294

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           +  Y +HG G KA   F +MRK G  PD +TFL LLYACSH+G+V++G +YF  M  ++G
Sbjct: 295 IMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYG 354

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           +    +HY C+VDLLGRA RL+EA E I G+P+ PTPI+W  LL+ C  H NVELG+   
Sbjct: 355 VIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVI 414

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            ++ EL+    G Y +LSN+ A AGRW+DV  +R LM   GV K PGCS V+       F
Sbjct: 415 EQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEF 474

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEHSEKLALA 773
           F GD  H  S K+++ L  LV+ +K +GYVP TS   H D++DEEK   L  HSEKLA+ 
Sbjct: 475 FSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAIT 534

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+L T PGT IR+ KNLR+CGDCHSA   IS+I + +IILRD  RFHHFK+G C+C+ Y
Sbjct: 535 FGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDY 594

Query: 834 W 834
           W
Sbjct: 595 W 595



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 149/579 (25%), Positives = 254/579 (43%), Gaps = 78/579 (13%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRIS------PS 96
           LL +C SL ++  + Q   ++   H   S ++  +++  + +P  + +Q         P 
Sbjct: 26  LLPKCTSLRELKQL-QAFAIKTHLHSDLS-VLTKFINFCSLNPTTTSMQHAHHLFDQIPQ 83

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           P  +  +N + R   R   P  AF LF Q++  G  PD+YTFP +LKAC    +   G  
Sbjct: 84  P-DIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQ 142

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H +    G   NV+VC  L+ MY  C+ +  AR++FD++++P    +V++N ++  YA+
Sbjct: 143 LHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPC---VVTYNAMITGYAR 199

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV-FERM 275
                  L LF  +     ++   V++++ LS+CA LG    GK   M E  KK  F R 
Sbjct: 200 GSRPNEALSLFRELQAR-NLKPTDVTMLSVLSSCALLGALDLGKW--MHEYVKKNGFNRF 256

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              D     A++  Y++ GS +DA  +F+ M   + +     WSA+I  YA  GHG +A+
Sbjct: 257 VKVDT----ALIDMYAKCGSLDDAVCVFENMAVRDTQ----AWSAMIMAYAIHGHGLKAV 308

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +F++M+  G EP+ +T + LL  C+  G +  G E + Y ++    V       +    
Sbjct: 309 SLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFE-YFYGMRDKYGVIPG----IKHYG 363

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            ++D+  +   ++ A   F    P       W  ++ +   +G       +  Q+F+ D 
Sbjct: 364 CMVDLLGRAGRLEEA-YEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDD 422

Query: 456 LVKPNAFTLSCALMACARLAALRFGR-QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
               +   LS     CAR      GR +   YV +   E  +  +  C            
Sbjct: 423 SHGGDYIILS---NLCARA-----GRWEDVNYVRKLMNERGVVKIPGC------------ 462

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPDGVTFLVLL 570
                  +++  NVV      +G G+H +  K H A D++ KE    G  P+  T LV  
Sbjct: 463 ------SSVEVNNVVH--EFFSGDGVHSVSTKLHQALDELVKELKLVGYVPN--TSLVF- 511

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
               H+ M D+         KE  +   +E  A    LL
Sbjct: 512 ----HADMEDE--------EKEVTLRYHSEKLAITFGLL 538


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/703 (36%), Positives = 398/703 (56%), Gaps = 36/703 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+ C +      G  VHA   + GF  ++ + N L+ MY +C  +  A  +FD M +  
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLER- 68

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  ++  Y Q G+A+G L L   M G   V+ +  +   +L AC +LG    G 
Sbjct: 69  --NVVSWTALMCGYLQEGNAKGSLALLCEM-GYSGVKPNEFTFSTSLKACGALGVVENGM 125

Query: 261 QCGMMEEAKKVFERMKVKDVVSW-----NAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
           Q             M VK    W     NA +  YS+ G    A  +F KM   N+    
Sbjct: 126 Q----------IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNL---- 171

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+A+IAG+   G+G ++L +F++MQ  G  P+  T  S L  C ++GA+  G + H  
Sbjct: 172 VSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHAS 231

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            I R   +   +    ++ +A++D+YAKC  +  A+ +FD I  KN  + +W+ +I  ++
Sbjct: 232 LITRGFPISIRN----IIASAIVDLYAKCGYLFEAQKVFDRIEQKN--LISWSALIQGFA 285

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           Q G   +A+ LF Q+  ++ +   + F LS  +   A LA +  G+Q+H Y+L+    + 
Sbjct: 286 QEGNLLEAMDLFRQL--RESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLD 343

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           I  VAN +IDMY + G  + A  +F  ++ RNVVSWT ++TGYG HGLG+KA   F++M+
Sbjct: 344 IS-VANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQ 402

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
            +G+  D V +L LL ACSHSG++ +  +YF  +     +    EHYAC+VD+LGRA +L
Sbjct: 403 LDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQL 462

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
            EA  LIE M ++P   IW  LL+ CR+H N+E+G      L  ++++   +Y ++SNIY
Sbjct: 463 KEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIY 522

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A AG WK+  R+R L+K  G+KK  G SWV+  +    F+ GD THP ++KI+E+L  + 
Sbjct: 523 AEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEME 582

Query: 736 QRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA---PGTPIRITKNL 791
           +R+K  +GY     FALHDV++E K + L  HSEKLA+   ++       G  IR+ KNL
Sbjct: 583 RRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNL 642

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+CGDCH  I  +S I+    ++RD+NRFH F++G C+C  YW
Sbjct: 643 RVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 233/507 (45%), Gaps = 86/507 (16%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           +  + LI  Y   +    A S+  R+     +V  W AL+   ++      +  L  +M 
Sbjct: 40  IMNNDLIDMYGKCSRVDLACSVFDRMLER--NVVSWTALMCGYLQEGNAKGSLALLCEMG 97

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
             G  P+E+TF   LKACG L     G  +H +   SGF+    V NA + MY++C  + 
Sbjct: 98  YSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIG 157

Query: 188 YARQLFDEM-FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
            A Q+F++M F+    ++VSWN ++A +   G+    L+LF RM G  +V  D  +  + 
Sbjct: 158 MAEQVFNKMPFR----NLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVP-DEFTFTST 212

Query: 247 LSACASLGTWSRGKQ----------------------------CGMMEEAKKVFERMKVK 278
           L AC +LG    G Q                            CG + EA+KVF+R++ K
Sbjct: 213 LKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK 272

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +++SW+A++ G+++ G+  +A  LF+++R+    ++    S ++  +A        L + 
Sbjct: 273 NLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFAD-------LALV 325

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            Q                            GK+ HCY +K    +      D+ V N++I
Sbjct: 326 EQ----------------------------GKQMHCYILKVPSGL------DISVANSII 351

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY KC   + A  +F  +  +N  V +WTVMI  Y ++G    A+ LF +M  Q   ++
Sbjct: 352 DMYLKCGLTEEAERLFSEMQVRN--VVSWTVMITGYGKHGLGEKAIHLFNRM--QLDGIE 407

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
            +       L AC+    +R  ++  + +  N    + P + +  C++D+  R+G +  A
Sbjct: 408 LDEVAYLALLSACSHSGLIRESQEYFSRLCNNH--QMKPNIEHYACMVDILGRAGQLKEA 465

Query: 517 RVVFDNLKQR-NVVSWTSLMTGYGMHG 542
           + + +N+K + N   W +L++   +HG
Sbjct: 466 KNLIENMKLKPNEGIWQTLLSACRVHG 492


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/700 (38%), Positives = 391/700 (55%), Gaps = 62/700 (8%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           +F  + KA  + P  +    +H +I       N  +   LM  YA C      R++FDEM
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
                 ++V +N ++ +Y  +   + GL++F  M      + D  +    L AC+     
Sbjct: 80  SDR---NVVFYNVMIRSYVNNHRYDDGLLVFREMVNG-GFRPDNYTYPCVLKACSC---- 131

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           S   + G++     +   +     V  N ++  Y + G   +A  +F +M    +  +VV
Sbjct: 132 SENLRYGLLIHGDVLKVGLDFNLFVG-NGLIAMYGKCGCLFEARRVFDEM----IWKDVV 186

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W++++AGYA      +AL++ R+M+  G +P+  T+ SL+   A+  +           
Sbjct: 187 SWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSS----------- 235

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            + VL V+                            +F  +  KN  + +W VMI  Y +
Sbjct: 236 -ENVLYVEK---------------------------IFVNLERKN--LISWNVMIRVYMK 265

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           N     A+ L+ QM  +   V+P+A T +  L AC  L+AL  GR+IH YV + +   L 
Sbjct: 266 NSLPTQAVDLYLQM--EKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKK---LC 320

Query: 497 P--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           P   + N LIDMY+R G +D A+ VFD +K R+V SWTSL++ YGM G G  A   F +M
Sbjct: 321 PNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEM 380

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
              G APD + F+ +L ACSHSG++D+G  YF  M+ ++ I+ R EHYAC+VDLLGRA R
Sbjct: 381 LNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGR 440

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           +DEA  +I+ MP+EP   +W  LL+ CR+  N+++G LAA+ LL+L  E+ G Y LLSNI
Sbjct: 441 VDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNI 500

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA AGRWK+V  IRS+MK   ++K PG S V+      TF  GD +HPQS++IYE L  L
Sbjct: 501 YAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVL 560

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
           V ++K +GYVP+T  ALHDV++E+K   L  HSEKLA+ + +L T     IRITKNLR+C
Sbjct: 561 VAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVC 619

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GDCH A   IS I+  EII+RD+NRFHHFK+G C+C  YW
Sbjct: 620 GDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 152/533 (28%), Positives = 253/533 (47%), Gaps = 69/533 (12%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L Q   +  +  +H  I   N +H  PS    L+ +Y +   P     +   +S    +V
Sbjct: 28  LDQNPDIKTLKKLHTMIFYLN-SHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDR--NV 84

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            ++N +IR  V     D+   +F +M+  G+ PD YT+P VLKAC    + R G  +H  
Sbjct: 85  VFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGD 144

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   G D N+FV N L+AMY +C  L  AR++FDEM      D+VSWN++VA YA +   
Sbjct: 145 VLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWK---DVVSWNSMVAGYAHNMRF 201

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           +  L +   M  D   + DG ++ + + A A+  + +       +   +K+F  ++ K++
Sbjct: 202 DDALEICREME-DYGQKPDGCTMASLMPAVANTSSEN-------VLYVEKIFVNLERKNL 253

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           +SWN M+  Y +      A  L+ +M +                                
Sbjct: 254 ISWNVMIRVYMKNSLPTQAVDLYLQMEK-------------------------------- 281

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
              C +EP+ +T  S+L  C  + ALLLG+  H Y  K+ L        +L++ N+LIDM
Sbjct: 282 ---CRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLC------PNLLLENSLIDM 332

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YA+C  +D A+ +FD +  K RDVA+WT +I +Y   G   +A+ALF +M    +   P+
Sbjct: 333 YARCGCLDDAKRVFDRM--KFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQ--APD 388

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARV 518
           +      L AC+    L  GR I+   + + Y  + P + +  CL+D+  R+G +D A  
Sbjct: 389 SIAFVAILSACSHSGLLDEGR-IYFKQMTDDYR-ITPRIEHYACLVDLLGRAGRVDEAYN 446

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +   +  + N   W +L++   +    D    A D + +  LAP+   + VLL
Sbjct: 447 IIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQ--LAPEQSGYYVLL 497


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/556 (41%), Positives = 350/556 (62%), Gaps = 16/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V  N ++  Y++ GS E+A  LF KM  +++    V+W+ +I+GY+Q G   EAL +F
Sbjct: 139 DLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDM----VSWTVLISGYSQSGQASEALALF 194

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M   G +PN  TL SLL    +  +   G++ H +++K    ++      + V ++L+
Sbjct: 195 PKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMN------VHVGSSLL 248

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYA+   +  A+V+F+++A KN  V +W  +I  +++ G     + LF QM +Q    +
Sbjct: 249 DMYARWAHMREAKVIFNSLAAKN--VVSWNALIAGHARKGEGEHVMRLFLQMLRQG--FE 304

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P  FT S    ACA   +L  G+ +HA+V+++  +  I ++ N LIDMY++SG I  A+ 
Sbjct: 305 PTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQP-IAYIGNTLIDMYAKSGSIKDAKK 363

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF  L ++++VSW S+++GY  HGLG +A   F+QM K  + P+ +TFL +L ACSHSG+
Sbjct: 364 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 423

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D+G  YF+ M K   I A+  H+  +VDLLGRA RL+EA + IE MP++PT  +W ALL
Sbjct: 424 LDEGQYYFELMKKH-KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR+H N++LG  AA ++ EL+    G + LLSNIYA+AGR  D A++R +MK +GVKK
Sbjct: 483 GSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 542

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P CSWV+ +     F   D +HP  ++I  +   +  +IK +GYVP TS  L  ++ ++
Sbjct: 543 EPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQD 602

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEKLALA+ +L T PG  IRI KN+RICGDCHSA  F S ++  EII+RD+N
Sbjct: 603 RELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTN 662

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHF  G C+C+ YW
Sbjct: 663 RFHHFLHGMCSCRDYW 678



 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 200/449 (44%), Gaps = 77/449 (17%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+   +  +L  C  L   + G ++HA I SS F+ ++ + N ++ MYA+C +L  A+ L
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD+M      D+VSW  +++ Y+QSG A   L LF +M   +  Q +  +L + L A  +
Sbjct: 163 FDKM---PTKDMVSWTVLISGYSQSGQASEALALFPKML-HLGFQPNEFTLSSLLKASGT 218

Query: 253 LGTWSRGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAM 286
             +   G+Q                             M EAK +F  +  K+VVSWNA+
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G++R G  E    LF                               L + RQ    G 
Sbjct: 279 IAGHARKGEGEHVMRLF-------------------------------LQMLRQ----GF 303

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           EP   T  S+ + CAS G+L  GK  H + IK      G  P    + N LIDMYAK  S
Sbjct: 304 EPTHFTYSSVFTACASSGSLEQGKWVHAHVIK-----SGGQP-IAYIGNTLIDMYAKSGS 357

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  A+ +F  +    +D+ +W  +I  Y+Q+G   +AL LF QM +    V+PN  T   
Sbjct: 358 IKDAKKVFRRLV--KQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK--VQPNEITFLS 413

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L AC+    L  G+     + +++ E  +      ++D+  R+G ++ A    + +  +
Sbjct: 414 VLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVT-VVDLLGRAGRLNEANKFIEEMPIK 472

Query: 527 NVVS-WTSLMTGYGMHGLGDKAHWAFDQM 554
              + W +L+    MH   D   +A +Q+
Sbjct: 473 PTAAVWGALLGSCRMHKNMDLGVYAAEQI 501



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 33/284 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI    +      A  LF +M+  G+ P+E+T   +LKA G  PS   G  +HA   
Sbjct: 174 WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSL 233

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D NV V ++L+ MYAR   +  A+ +F+ +      ++VSWN ++A +A+ G+ E 
Sbjct: 234 KYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL---AAKNVVSWNALIAGHARKGEGEH 290

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            + LF +M      +    +  +  +ACAS G+  +GK                      
Sbjct: 291 VMRLFLQMLRQ-GFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLI 349

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G +++AKKVF R+  +D+VSWN++++GY++ G   +A  LF++M +  V+ N +
Sbjct: 350 DMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEI 409

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
           T+ +V+   +  G   E    F  M+   +E  V   VT+V LL
Sbjct: 410 TFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLL 453



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 133/273 (48%), Gaps = 23/273 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNALI    R    ++  RLFLQM+R+G+ P  +T+  V  AC    S   G  VH
Sbjct: 271 NVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVH 330

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  SG     ++ N L+ MYA+  ++  A+++F  + +    DIVSWN+I++ YAQ G
Sbjct: 331 AHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ---DIVSWNSIISGYAQHG 387

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF +M    KVQ + ++ ++ L+AC+           G+++E +  FE MK  
Sbjct: 388 LGAEALQLFEQML-KAKVQPNEITFLSVLTACS---------HSGLLDEGQYYFELMKKH 437

Query: 279 DVVSWNA----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            + +  A    +V    R G   +A    ++M    +K     W A++   + R H +  
Sbjct: 438 KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEM---PIKPTAAVWGALLG--SCRMHKNMD 492

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGC-ASVGAL 366
           L V+   Q   L+P+      LLS   AS G L
Sbjct: 493 LGVYAAEQIFELDPHDSGPHVLLSNIYASAGRL 525


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 288/774 (37%), Positives = 437/774 (56%), Gaps = 38/774 (4%)

Query: 71   SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
            S L++A+  H     A  +   I+    +    N LI   V+    + A  +F+   R  
Sbjct: 309  SALVSAFARHGMLDEAKDIF--INLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGT-RDS 365

Query: 131  WHPDEYTFPFVLKACGE--LPSSRC--GSSVHAVICSSGF-DSNVFVCNALMAMYARCDT 185
            +  +  TF  +L A  E  +P      G  VH  I  +G  D  + + N L+ MYA+C  
Sbjct: 366  FVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGA 425

Query: 186  LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
            +  A ++F  +      D VSWNTI++   Q+G  EG +M +  M     +     + ++
Sbjct: 426  IDKASRVFRLLCAR---DRVSWNTIISVLDQNGFCEGAMMNYCMMRQGC-ISPSNFAAIS 481

Query: 246  ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
             LS+CASL   + G+Q         V   + +   VS NA+V  Y   G+  +++ +F  
Sbjct: 482  GLSSCASLRLLTAGQQV----HCDAVKWGLDLDTSVS-NALVKMYGDCGARSESWEIFNS 536

Query: 306  MRQENVKLNVVTWSAVIAGYAQRGHG--HEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            M + ++    V+W++++ G     H    E+++VF  M   GL PN VT V+LLS  + +
Sbjct: 537  MAEHDI----VSWNSIM-GVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPL 591

Query: 364  GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
              L LGK+ H   +K          +D  V NAL+  YAK   +D    +F +++ + RD
Sbjct: 592  SVLELGKQVHAVVLKH------GAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGR-RD 644

Query: 424  VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
              +W  MI  Y  NG   + +     M   ++++  +  T S  L ACA +AAL  G ++
Sbjct: 645  AVSWNSMISGYIYNGHLQETMDCVWLMMHSNQML--DCCTFSIVLNACASVAALERGMEM 702

Query: 484  HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
            HA+ +R+Q E  +  V + L+DMYS+ G ID A  VF+++ Q+N  SW S+++GY  HGL
Sbjct: 703  HAFGIRSQLESDV-VVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGL 761

Query: 544  GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
            G+KA   F++M++ G  PD VTF+ +L ACSH+G+VD+GL YF+ M ++ GI    EHY+
Sbjct: 762  GEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMM-EDHGILPHIEHYS 820

Query: 604  CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN---VELGELAANRLLEL 660
            C++DLLGRA +L +  E I  MPM+P  +IW  +L  CR   +   ++LG+ A+  LLEL
Sbjct: 821  CVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLEL 880

Query: 661  ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
            E +   +Y L SN YA  GRW+D A+ R+ M    +KK  G SWV   +G  TF  GDR+
Sbjct: 881  EPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRS 940

Query: 721  HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
            HP +++IYE L  L+Q+IK  GYVP T FAL+D+++E K +LL  HSEKLA+A+ +  ++
Sbjct: 941  HPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSS 1000

Query: 781  PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
               PIRI KNLR+CGDCH+A  +IS I+  +IILRDS RFHHF++G C+C  YW
Sbjct: 1001 SDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 154/606 (25%), Positives = 277/606 (45%), Gaps = 50/606 (8%)

Query: 56  IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALS----LLQRISPSPFSVFWWNALIRR 109
           +H +++ + LTH     +HL+  Y   +  + A      +L+R + S      W  L+  
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVS------WTCLVSG 131

Query: 110 AVRLRLPDNAFRLFLQMMRRGWH---PDEYTFPFVLKACGELPSSRCGSS--VHAVICSS 164
            V   + D AFR+F  M+  G     P  +TF  VL+AC +        +  VH ++  +
Sbjct: 132 YVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKT 191

Query: 165 GFDSNVFVCNALMAMYARCDT--LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + SN  VCNAL++MY  C       A+Q+FD      + D+++WN +++ YA+ G    
Sbjct: 192 IYASNTTVCNALISMYGNCSVGLPLQAQQVFD---TTPVRDLITWNALMSVYAKKGYVVS 248

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC--GMMEEA-KKVFERMKVKD 279
              LF  M  D       + L        SL T +    C  G++++   +V +     D
Sbjct: 249 TFTLFMAMLHD----DSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSD 304

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           +   +A+V+ ++R G  ++A  +F  +++     N VT + +I G  ++    EA+ +F 
Sbjct: 305 LYVGSALVSAFARHGMLDEAKDIFINLKER----NAVTLNGLIVGLVKQHCSEEAVGIFM 360

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVG----ALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
             +      N  T V LLS  A        L+ G+E H + ++  L +D      + + N
Sbjct: 361 GTRD-SFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGL-IDLK----IALSN 414

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            L++MYAKC ++D A  +F  +  ++R   +W  +I    QNG    A+  +  M Q   
Sbjct: 415 GLVNMYAKCGAIDKASRVFRLLCARDR--VSWNTIISVLDQNGFCEGAMMNYCMMRQ--G 470

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            + P+ F     L +CA L  L  G+Q+H   ++   + L   V+N L+ MY   G    
Sbjct: 471 CISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLD-LDTSVSNALVKMYGDCGARSE 529

Query: 516 ARVVFDNLKQRNVVSWTSLM-TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           +  +F+++ + ++VSW S+M      H    ++   F  M + GL P+ VTF+ LL A S
Sbjct: 530 SWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALS 589

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
              +++ G +    + K   I   A   A ++    ++  +D   +L   M      + W
Sbjct: 590 PLSVLELGKQVHAVVLKHGAIEDNAVDNA-LMSCYAKSGDMDSCEQLFSSMSGRRDAVSW 648

Query: 635 VALLNG 640
            ++++G
Sbjct: 649 NSMISG 654


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/733 (36%), Positives = 398/733 (54%), Gaps = 78/733 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NAL+    R RLPD A  LF +M  R           +      LP +       A + 
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAA------AALA 104

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           S  F  +V    +L+  Y R   L+ A +LF +M +    + VS+  ++          G
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER---NHVSYTVLL----------G 151

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
           GL+                                     G + EA+++F+ M  +DVV+
Sbjct: 152 GLL-----------------------------------DAGRVNEARRLFDEMPDRDVVA 176

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           W AM++GY + G   +A ALF +M     K NVV+W+A+I+GYAQ G  + A  +F  M 
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
               E N V+  ++L G    G        H      + +    HP  +   NA++  + 
Sbjct: 233 ----ERNEVSWTAMLVGYIQAG--------HVEDAAELFNAMPEHP--VAACNAMMVGFG 278

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +   VD A+ +F+ +    RD  TW+ MI +Y QN    +AL+ F +M  +   V+PN  
Sbjct: 279 QRGMVDAAKTVFEKMC--ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG--VRPNYP 334

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           ++   L  CA LA L +GR++HA +LR  ++M + F  + LI MY + G++D A+ VF  
Sbjct: 335 SVISILTVCAALAVLDYGREVHAAMLRCSFDMDV-FAVSALITMYIKCGNLDKAKRVFHT 393

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            + +++V W S++TGY  HGLG++A   F  MR  G++PDG+T++  L ACS++G V +G
Sbjct: 394 FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEG 453

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            + F+SM+    I   AEHY+C+VDLLGR+  ++EA +LI+ MP+EP  +IW AL+  CR
Sbjct: 454 REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACR 513

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H N E+ E AA +LLELE    G Y LLS+IY + GRW+D +++R  +    + K PGC
Sbjct: 514 MHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGC 573

Query: 703 SWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           SW++  +    F  GD   HP+   I  IL  L   +   GY    SF LHD+D+E+K  
Sbjct: 574 SWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSH 633

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+ A+AYG+L    G PIR+ KNLR+CGDCHSAI  I+ I + EIILRD+NRFH
Sbjct: 634 SLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFH 693

Query: 822 HFKEGSCTCKGYW 834
           HFK+G C+C+ YW
Sbjct: 694 HFKDGFCSCRDYW 706



 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 147/512 (28%), Positives = 240/512 (46%), Gaps = 55/512 (10%)

Query: 70  PSHLIAAYVSHNAPSPALSLLQRISPS----------PFSVFWWNALIRRAVRLRLPDNA 119
           PS  +A+Y   NA    LSL ++  P           P SV  + +L+R  VR  L  +A
Sbjct: 75  PSRDLASY---NALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADA 131

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            RLF QM      P+     + +   G L + R   +    +     D +V    A+++ 
Sbjct: 132 IRLFQQM------PERNHVSYTVLLGGLLDAGRVNEARR--LFDEMPDRDVVAWTAMLSG 183

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y +   ++ AR LFDEM +    ++VSW  +++ YAQ+G+      LF  M         
Sbjct: 184 YCQAGRITEARALFDEMPKR---NVVSWTAMISGYAQNGEVNLARKLFEVMPER------ 234

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                N +S  A L  +    Q G +E+A ++F  M    V + NAM+ G+ + G  + A
Sbjct: 235 -----NEVSWTAMLVGYI---QAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAA 286

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +F+KM + +      TWSA+I  Y Q     EAL  FR+M + G+ PN  +++S+L+ 
Sbjct: 287 KTVFEKMCERDDG----TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA++  L  G+E H   ++    +      D+  ++ALI MY KC ++D A+ +F    P
Sbjct: 343 CAALAVLDYGREVHAAMLRCSFDM------DVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           K  D+  W  MI  Y+Q+G    AL +F  M      + P+  T   AL AC+    ++ 
Sbjct: 397 K--DIVMWNSMITGYAQHGLGEQALGIFHDMRLAG--MSPDGITYIGALTACSYTGKVKE 452

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
           GR+I   +  N          +C++D+  RSG ++ A  +  N+  + + V W +LM   
Sbjct: 453 GREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGAC 512

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            MH   + A +A  ++ +  L P      VLL
Sbjct: 513 RMHRNAEIAEFAAKKLLE--LEPGNAGPYVLL 542



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 182/416 (43%), Gaps = 49/416 (11%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G +E A+  FE M ++   S+NA++ GY R    + A  LF++M       ++ +++A
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR----DLASYNA 84

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL-------------- 366
           +I+G + R       D    +      P+VV+  SLL G    G L              
Sbjct: 85  LISGLSLR--RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERN 142

Query: 367 ------LLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAP 419
                 LLG       +     +    PD D++   A++  Y +   +  AR +FD + P
Sbjct: 143 HVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM-P 201

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           K R+V +WT MI  Y+QNG  N A  LF  M ++++        +S   M    + A   
Sbjct: 202 K-RNVVSWTAMISGYAQNGEVNLARKLFEVMPERNE--------VSWTAMLVGYIQA--- 249

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G    A  L N          N ++  + + G +D A+ VF+ + +R+  +W++++  Y 
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISAR 598
            +    +A   F +M   G+ P+  + + +L  C+   ++D G +   +M +  F +   
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNGCRIHANVELGELA 653
           A   + ++ +  +   LD+A  +      EP  I+ W +++ G   H    LGE A
Sbjct: 370 A--VSALITMYIKCGNLDKAKRVFH--TFEPKDIVMWNSMITGYAQHG---LGEQA 418



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 42/210 (20%)

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N  I   +R+G+I+ AR  F+ +  R   S+ +L+ GY  + L D A   F +M    LA
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 561 -----------------------------PDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
                                        P  V+F  LL      G++   ++ F  M +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
              +S     Y  ++  L  A R++EA  L + MP +   + W A+L+G       + G 
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGY-----CQAGR 189

Query: 652 LAANRLL--ELESEKDGSYTLLSNIYANAG 679
           +   R L  E+      S+T + + YA  G
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNG 219


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/692 (37%), Positives = 381/692 (55%), Gaps = 82/692 (11%)

Query: 174 NALMAMYARC-----DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N L+ M  RC     DT +Y R LF ++ QP   +I  WNT++     +   +  +  + 
Sbjct: 46  NYLLNMILRCSFDFSDT-NYTRFLFHQIKQP---NIFLWNTMIRGLVSNDCFDDAIEFYG 101

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRG--------------------------KQC 262
            M  +  +  +  +    L ACA L     G                           +C
Sbjct: 102 LMRSEGFLP-NNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC 160

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +E+A KVF+ +  K+VVSW A+++GY  +G F +A  +F+++ + N            
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMN------------ 208

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                                  L P+  T+V +LS C  +G L  G+  H    K ++ 
Sbjct: 209 -----------------------LAPDSFTIVRVLSACTQLGDLNSGEWIH----KCIME 241

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +      ++ V  +L+DMYAKC +++ AR +FD +  K  D+ +W  MI  Y+ NG   +
Sbjct: 242 M--GMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK--DIVSWGAMIQGYALNGLPKE 297

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+ LF QM  Q + VKP+ +T+   L ACARL AL  G  +   V RN++ +  P +   
Sbjct: 298 AIDLFLQM--QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEF-LYNPVLGTA 354

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LID+Y++ G +  A  VF  +K+++ V W ++++G  M+G    +   F Q+ K G+ PD
Sbjct: 355 LIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPD 414

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
           G TF+ LL  C+H+G+VD+G +YF+SM + F ++   EHY C+VDLLGRA  LDEA +LI
Sbjct: 415 GNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLI 474

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MPME   I+W ALL  CRIH + +L ELA  +L+ELE    G+Y LLSNIY+   +W 
Sbjct: 475 RNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWD 534

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           + A++R  M    ++K PGCSW++       F VGD+ HP S+KIY  L  L +++K  G
Sbjct: 535 EAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAG 594

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP T F L D+++EEK   L  HSEKLA+A+G+++  P   IR+ KNLR+CGDCH AI 
Sbjct: 595 YVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIK 654

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS I   EI +RD+NRFH F+EGSC+C  YW
Sbjct: 655 LISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 226/486 (46%), Gaps = 82/486 (16%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN +IR  V     D+A   +  M   G+ P+ +TFPFVLKAC  L   + G  +H
Sbjct: 76  NIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++   GFD +VFV  +L+ +YA+C  L  A ++FD++      ++VSW  I++ Y   G
Sbjct: 136 TLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDK---NVVSWTAIISGYIGVG 192

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
                + +F R+  ++ +  D  ++V  LSAC  LG  + G+                  
Sbjct: 193 KFREAIDMFRRLL-EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVG 251

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG ME+A+ VF+ M  KD+VSW AM+ GY+  G  ++A  LF +M++ENVK
Sbjct: 252 TSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVK 311

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                              P+  T+V +LS CA +GAL LG+  
Sbjct: 312 -----------------------------------PDCYTVVGVLSACARLGALELGEWV 336

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                +     +       ++  ALID+YAKC S+  A  +F  +  K+R V  W  +I 
Sbjct: 337 SGLVDRNEFLYNP------VLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVV--WNAIIS 388

Query: 433 SYSQNGGANDALALFPQMFQQDKL-VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             + NG    +  LF Q+   +KL +KP+  T    L  C     +  GR+    + R  
Sbjct: 389 GLAMNGYVKISFGLFGQV---EKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR-- 443

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAH 548
           +  L P + +  C++D+  R+G +D A  +  N+  + N + W +L+    +H     A 
Sbjct: 444 FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAE 503

Query: 549 WAFDQM 554
            A  Q+
Sbjct: 504 LALKQL 509



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 27/265 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I+      LP  A  LFLQM R    PD YT   VL AC  L +   G  V  ++ 
Sbjct: 282 WGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD 341

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + F  N  +  AL+ +YA+C ++S A ++F  M +    D V WN I++  A +G  + 
Sbjct: 342 RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEK---DRVVWNAIISGLAMNGYVKI 398

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
              LF ++   + ++ DG + +  L  C            G+++E ++ F  M       
Sbjct: 399 SFGLFGQVE-KLGIKPDGNTFIGLLCGCT---------HAGLVDEGRRYFNSMYRFFSLT 448

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +  +  MV    R G  ++A  L + M  E    N + W A++   A R H    L  
Sbjct: 449 PSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEA---NAIVWGALLG--ACRIHRDTQLAE 503

Query: 338 FRQMQFCGLEP----NVVTLVSLLS 358
               Q   LEP    N V L ++ S
Sbjct: 504 LALKQLIELEPWNSGNYVLLSNIYS 528


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/765 (33%), Positives = 407/765 (53%), Gaps = 45/765 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  + ALI    +    D A  LF  M+  G  P+EYTF  +L AC      + GS VH
Sbjct: 160 NVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVH 219

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++   G  S VF+CNALM +Y +C  L    +LF+EM +    DI SWNT++++  +  
Sbjct: 220 GIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPER---DITSWNTVISSLVKEF 276

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             +     F  M     ++ D  SL   L+ACA      +G+Q                 
Sbjct: 277 KYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVS 336

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG   +   +FE M ++DV++W  M+T Y   G  + A  +F KM     K
Sbjct: 337 SSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMP----K 392

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            N ++++AV+AG ++   G  AL++F +M   G+E +  TL S+++ C  + +  + ++ 
Sbjct: 393 RNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQI 452

Query: 373 HCYTIK-RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
             + +K  +LS       +  +  AL+DMY +C  ++ A  +F   + +N   A  T MI
Sbjct: 453 QGFVMKFGILS-------NSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMI 505

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y++NG  N+A++LF     +  +V     + S  L  C  +     G+Q+H + L++ 
Sbjct: 506 CGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTS-ILSLCGSIGFHEMGKQMHCHALKSG 564

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             +    V N  + MYS+  ++D A  VF+ +  +++VSW  L+ G+ +H  GDKA   +
Sbjct: 565 L-ITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIW 623

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHS--GMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            +M K G+ PD +TF +++ A  H+   +VD     F SM  E  I    EHYA  + +L
Sbjct: 624 KKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVL 683

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
           GR   L+EA + I  MP+EP   +W ALLN CRI+ N  L +LAA  +L +E +   SY 
Sbjct: 684 GRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYI 743

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           L SN+Y+ +GRW    ++R  M+  G +K P  SW+  +    +F+  DR+HPQ + IY 
Sbjct: 744 LKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYS 803

Query: 730 ILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITK 789
            L  L+     +GYVP TSF L +V++ +K + LF HS KLA  +GIL T PG PI+I K
Sbjct: 804 GLEILILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVK 863

Query: 790 NLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           N+R+CGDCH+ + ++S++   +I+LRD++ FH F +G C+C  YW
Sbjct: 864 NVRLCGDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           +D+ + NALI  Y K   V  A  +F  ++  N  V ++T +I  +S++   ++A+ LF 
Sbjct: 128 EDIFLGNALISAYLKLGLVRDADKVFSGLSCPN--VVSYTALISGFSKSDWEDEAVELFF 185

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
            M   D  ++PN +T    L AC R    + G Q+H  V++      + F+ N L+ +Y 
Sbjct: 186 AML--DSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCV-FICNALMGLYC 242

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFL 567
           + G +D    +F+ + +R++ SW ++++        D+A   F  M+  +GL  D  +  
Sbjct: 243 KCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLS 302

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            LL AC+ S    +G +   +++ + G+ +     + ++    +    ++  +L E MP+
Sbjct: 303 TLLTACAGSVKPMKG-QQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPI 361

Query: 628 EPTPIIWVALLN 639
               I W  ++ 
Sbjct: 362 RDV-ITWTGMIT 372



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
             R +HA  L+ + ++   F+ N LI  Y + G +  A  VF  L   NVVS+T+L++G+
Sbjct: 115 LARAVHAQFLKLEEDI---FLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGF 171

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
                 D+A   F  M   G+ P+  TF+ +L AC  +     G       S+  GI  +
Sbjct: 172 SKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLG-------SQVHGIVVK 224

Query: 599 AEHYACI------VDLLGRANRLDEAVELIEGMP 626
               +C+      + L  +   LD  + L E MP
Sbjct: 225 LGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMP 258


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/605 (39%), Positives = 345/605 (57%), Gaps = 42/605 (6%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G   +A+ V + M  + VV W+A++  ++  G  E A+ L ++MR + V+ NV+TW+ ++
Sbjct: 69  GATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLV 128

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G  + G   +A+    +M   G  P+   +   LS    VG + +G++ H Y +K    
Sbjct: 129 SGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCR 188

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA------------IAPKNRD------- 423
           +D        V  ALIDMY KC   D    +FD             +A  +R+       
Sbjct: 189 LDAC------VATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEAL 242

Query: 424 --------------VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
                         V +WT ++    QNG   +A+ LF +M  Q + ++PN+ T+ C L 
Sbjct: 243 RLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREM--QSEGIEPNSVTIPCVLP 300

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           A A +AAL  GR  H + LR  +   I +V + L+DMY++ G +  AR++F+ +  RNVV
Sbjct: 301 AFANIAALMHGRSAHCFSLRKGFHHDI-YVGSALVDMYAKCGRVRDARMIFEAMPYRNVV 359

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW +++ GY MHG  + A   F  M+     PD VTF  +L ACS +G  ++G  YF+ M
Sbjct: 360 SWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEM 419

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
             + GIS R EHYAC+V LLGRA +LD+A ++I  MP EP   IW +LL  CR+H NV L
Sbjct: 420 QHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVL 479

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            E+AA  L +LE E  G+Y LLSNIYA+   W  V R+R +MK  G+KK  GCSW++ K 
Sbjct: 480 AEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKN 539

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
                  GD +HP    I E L  L   ++ +G+ P T + LHDV+++EK D+L  HSEK
Sbjct: 540 KVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEK 599

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A G+++T+ GTP+++ KNLRICGDCH A+ FIS     EI +RD+NRFHHFK+G C+
Sbjct: 600 LAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCS 659

Query: 830 CKGYW 834
           C  YW
Sbjct: 660 CADYW 664



 Score =  192 bits (488), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 154/527 (29%), Positives = 247/527 (46%), Gaps = 85/527 (16%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD    P  LK+C  L  +    ++HA    +G   + FV ++L+  Y R    + AR +
Sbjct: 21  PDPRLLPSALKSCSALRLA---RALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSV 77

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD------------------- 233
            D M       +V W+ ++AA+A  GDAEG   L  RM  D                   
Sbjct: 78  LDGMPHR---TVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRS 134

Query: 234 ----------VKVQGDG-----VSLVNALSACASLGTWSRGKQ----------------- 261
                     V++ G+G       +  ALSA   +G  + G+Q                 
Sbjct: 135 GRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVA 194

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG  +E  +VF+     DV S NA+V G SR     +A  LF++     ++
Sbjct: 195 TALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIE 254

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           LNVV+W++++A   Q G   EA+D+FR+MQ  G+EPN VT+  +L   A++ AL+ G+  
Sbjct: 255 LNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSA 314

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HC+++++     G H  D+ V +AL+DMYAKC  V  AR++F+A+  +N  V +W  MIG
Sbjct: 315 HCFSLRK-----GFH-HDIYVGSALVDMYAKCGRVRDARMIFEAMPYRN--VVSWNAMIG 366

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+ +G A +A+ LF  M  Q    KP+  T +C L AC++      GR   +Y    Q+
Sbjct: 367 GYAMHGEAENAVRLFRSM--QSSKEKPDLVTFTCVLGACSQAGWTEEGR---SYFNEMQH 421

Query: 493 EMLI-PFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAH 548
           +  I P + +  C++ +  R+G +D A  + + +  + +   W SL+    +HG    A 
Sbjct: 422 KHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAE 481

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            A + + +  L P+     VLL     S  +  G+     M K  G+
Sbjct: 482 VAAENLFQ--LEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGL 526



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 148/351 (42%), Gaps = 65/351 (18%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
           S LIAA+ SH     A  LL+R+       +V  WN L+    R     +A    ++M  
Sbjct: 90  SALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG 149

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD---- 184
            G+ PD       L A G++     G  +H  +  +G   +  V  AL+ MY +C     
Sbjct: 150 EGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADE 209

Query: 185 ---------------------------TLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQ 216
                                       +S A +LF E    GI  ++VSW +IVA   Q
Sbjct: 210 IVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQ 269

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------- 260
           +G     + LF  M  +  ++ + V++   L A A++     G+                
Sbjct: 270 NGRDLEAVDLFREMQSE-GIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIY 328

Query: 261 ----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                     +CG + +A+ +FE M  ++VVSWNAM+ GY+  G  E+A  LF+ M+   
Sbjct: 329 VGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSK 388

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNV---VTLVSLL 357
            K ++VT++ V+   +Q G   E    F +MQ   G+ P +     +V+LL
Sbjct: 389 EKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLL 439



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 130/299 (43%), Gaps = 26/299 (8%)

Query: 68  VPPSHLIAAYVSHNAP-SPALSLLQRISPS--PFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           V   + + A +S NA  S AL L +         +V  W +++   V+      A  LF 
Sbjct: 222 VASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFR 281

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
           +M   G  P+  T P VL A   + +   G S H      GF  +++V +AL+ MYA+C 
Sbjct: 282 EMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCG 341

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            +  AR +F+ M      ++VSWN ++  YA  G+AE  + LF  M    K + D V+  
Sbjct: 342 RVRDARMIFEAMPYR---NVVSWNAMIGGYAMHGEAENAVRLFRSMQSS-KEKPDLVTFT 397

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDA 299
             L AC+         Q G  EE +  F  M+ K  +S     +  MVT   R G  +DA
Sbjct: 398 CVLGACS---------QAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDA 448

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           + +  +M  E    +   W +++   + R HG+  L          LEP       LLS
Sbjct: 449 YDIINQMPFEP---DGCIWGSLLG--SCRVHGNVVLAEVAAENLFQLEPENAGNYVLLS 502



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 34/200 (17%)

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           FVA+ L+  Y R G    AR V D +  R VV W++L+  +  HG  + A    ++MR +
Sbjct: 56  FVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSD 115

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ P+ +T+  L+   + SG     +     M  E G    A   +C +  +G     D 
Sbjct: 116 GVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGE-GFLPDATGVSCALSAVGDVG--DV 172

Query: 618 AV-ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           AV E + G  ++           GCR+ A V                     T L ++Y 
Sbjct: 173 AVGEQLHGYVVKA----------GCRLDACVA--------------------TALIDMYG 202

Query: 677 NAGRWKDVARIRSLMKHTGV 696
             GR  ++ R+     H  V
Sbjct: 203 KCGRADEIVRVFDESSHMDV 222


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/553 (41%), Positives = 336/553 (60%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  YS +GS + A  +F K R    K  +  W+A+       GHG E L ++ +M   G
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTR----KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG 173

Query: 346 LEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +E +  T   +L  C     +   L  GKE H +  +R       +   + ++  L+DMY
Sbjct: 174 VESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRR------GYNSHVYIMTTLVDMY 227

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           A+   VD A  +F+ +  +N  V +W+ MI  Y++NG A +AL  F +M  + K   PN+
Sbjct: 228 ARFGCVDYASYVFNGMPVRN--VVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNS 285

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  GR IH Y+LR   + ++P V + L+ MY R G +D  + VFD
Sbjct: 286 VTMVSVLQACASLAALEQGRLIHGYILRRGLDSILP-VISALVTMYGRCGKLDVGQRVFD 344

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  R+VVSW SL++ YG+HG G KA   F++M   G +P  VTF+ +L ACSH G+V++
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G + F+SM ++ GI  + EHYAC+VDLLGRANRLDEA ++++ M  EP P +W +LL  C
Sbjct: 405 GKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSC 464

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A+ RL  LE +  G+Y LL++IYA A  W +V R++ L++H G++K PG
Sbjct: 465 RIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
             W++ +    +F   D  +P  ++I+  L  L + +K  GY+PQT   L++++ EEK  
Sbjct: 525 RCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKER 584

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLALA+G++ T+ G PIRITKNLR+C DCH    FIS  +  EI++RD NRFH
Sbjct: 585 IVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFH 644

Query: 822 HFKEGSCTCKGYW 834
            FK G C+C  YW
Sbjct: 645 RFKNGVCSCGDYW 657



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 168/365 (46%), Gaps = 48/365 (13%)

Query: 26  IKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSH 80
           +++ S  ++P  +   LL+  C    SL+    +H+ I+       P   + LI  Y   
Sbjct: 66  LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            +   A  +  +      +++ WNAL R        +    L+ +M R G   D +T+ +
Sbjct: 126 GSVDYARKVFDKTRKR--TIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTY 183

Query: 141 VLKACGELPSSRC-------GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           VLKAC    +S C       G  +HA +   G++S+V++   L+ MYAR   + YA  +F
Sbjct: 184 VLKAC---VASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-DGVSLVNALSACAS 252
           + M    + ++VSW+ ++A YA++G A   L  F  M  + K    + V++V+ L ACAS
Sbjct: 241 NGM---PVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACAS 297

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
           L    +G+                          +CG ++  ++VF+RM  +DVVSWN++
Sbjct: 298 LAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSL 357

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           ++ Y   G    A  +F++M         VT+ +V+   +  G   E   +F  M +  G
Sbjct: 358 ISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHG 417

Query: 346 LEPNV 350
           ++P V
Sbjct: 418 IKPQV 422



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 177/423 (41%), Gaps = 66/423 (15%)

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           ++ + +I    + G   +AL V  Q       P+  T   L+  C    +L  G   H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQES----SPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            +      D     D  +   LI MY+   SVD AR +FD    + R +  W  +  + +
Sbjct: 103 IL------DNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT--RKRTIYVWNALFRALT 154

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA----LRFGRQIHAYVLRNQ 491
             G   + L L+ +M +    V+ + FT +  L AC         L  G++IHA++ R  
Sbjct: 155 LAGHGEEVLGLYWKMNRIG--VESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRG 212

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           Y   + ++   L+DMY+R G +D A  VF+ +  RNVVSW++++  Y  +G   +A   F
Sbjct: 213 YNSHV-YIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271

Query: 552 DQMRKE--GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            +M  E    +P+ VT + +L AC+    ++QG +         G+ +     + +V + 
Sbjct: 272 REMMTETKDSSPNSVTMVSVLQACASLAALEQG-RLIHGYILRRGLDSILPVISALVTMY 330

Query: 610 GRANRLD-------------------------------EAVELIEGM---PMEPTPIIWV 635
           GR  +LD                               +A+++ E M      PTP+ +V
Sbjct: 331 GRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFV 390

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDG------SYTLLSNIYANAGRWKDVARIRS 689
           ++L  C     VE G+    RL E      G       Y  + ++   A R  + A++  
Sbjct: 391 SVLGACSHEGLVEEGK----RLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQ 446

Query: 690 LMK 692
            M+
Sbjct: 447 DMR 449


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/720 (36%), Positives = 398/720 (55%), Gaps = 28/720 (3%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + A  LF ++ R G   + +    +LK    + +      +HA  C  G D N FV  AL
Sbjct: 130 EEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTAL 189

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDV 234
           +  Y+ C  + +AR +FD +      D V+W  +V+ Y+++   E  L  F+  RMTG  
Sbjct: 190 IDAYSLCGAVCHARCVFDGIVGK---DAVTWTAMVSCYSENDIPEYALNTFSKMRMTG-- 244

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
             + +   L +AL A   L +   GK  G+   + K     +        A++  Y++ G
Sbjct: 245 -FKPNPFVLTSALKAAVCLSSALLGK--GIHGCSVKTLYDTEPH---VGGALLDMYAKCG 298

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             EDA A+F+ +  ++V    + WS +I+ YAQ     +A ++F +M    + PN  +L 
Sbjct: 299 DIEDAHAIFEMIPHDDV----ILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLS 354

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +L  CA++  L LG++ H   IK        +  +L V NAL+DMYAKC++++ +  +F
Sbjct: 355 GVLQACANIAFLELGEQIHNLAIKL------GYESELFVGNALMDMYAKCRNMENSLEIF 408

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
            ++   N    +W  +I  Y Q+G A DAL++F +M     L      T S  L ACA  
Sbjct: 409 SSLQDANE--VSWNTIIVGYCQSGFAEDALSVFHEMRAAHML--STQVTFSSVLRACANT 464

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           ++++   QIH+ + ++ +      V N LID Y++ G I  A  VF+++ + +VVSW S+
Sbjct: 465 SSIKHAVQIHSLIEKSTFNN-DTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSI 523

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++ Y +HG    A   FD+M K  +  + VTF+ LL  C  +G+V+QGL  F+SM  +  
Sbjct: 524 ISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHR 583

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I    EHY CIV LLGRA RL +A++ I  +P  P+P++W ALL+ C +H NV LG  AA
Sbjct: 584 IKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAA 643

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            ++L++E   + +Y LLSN+YA AG   +VA  R  M++ GVKK  G SWV+ K     F
Sbjct: 644 EKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAF 703

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
            VG   HP  + I  +L  L  +    GYVP  +  LHDVD+EEK  +L+ HSE+LALAY
Sbjct: 704 SVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAY 763

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G+  T PG PIRI KNLR C DCH+    IS I+  EII+RD NRFHHF+EG C+C  YW
Sbjct: 764 GLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 13/265 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W+ LI R  +    + AF +FL+MMR    P+E++   VL+AC  +     G  +H 
Sbjct: 315 VILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHN 374

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +    G++S +FV NALM MYA+C  +  + ++F  +      + VSWNTI+  Y QSG 
Sbjct: 375 LAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDA---NEVSWNTIIVGYCQSGF 431

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
           AE  L +F  M     +    V+  + L ACA+  +     Q   + E K  F      D
Sbjct: 432 AEDALSVFHEMRA-AHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIE-KSTFN----ND 485

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            +  N+++  Y++ G   DA  +F+ +    V+ +VV+W+++I+ YA  G    AL++F 
Sbjct: 486 TIVCNSLIDTYAKCGFIRDALKVFESI----VECDVVSWNSIISAYALHGRATNALELFD 541

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVG 364
           +M    ++ N VT VSLLS C S G
Sbjct: 542 RMNKSDIKANDVTFVSLLSVCGSTG 566



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 174/362 (48%), Gaps = 17/362 (4%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D    N ++  Y+++G    A  LF  M + N     V++  ++ GYA RG   EAL++F
Sbjct: 81  DTFCANVLLNFYAKLGPLATARRLFDGMPERNR----VSFVTLMQGYALRGEFEEALELF 136

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R++Q  G E N   L ++L    ++ A  L    H    K        H  +  V  ALI
Sbjct: 137 RRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKL------GHDRNAFVGTALI 190

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y+ C +V  AR +FD I  K  D  TWT M+  YS+N     AL  F +M       K
Sbjct: 191 DAYSLCGAVCHARCVFDGIVGK--DAVTWTAMVSCYSENDIPEYALNTFSKMRMTG--FK 246

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN F L+ AL A   L++   G+ IH   ++  Y+   P V   L+DMY++ GDI+ A  
Sbjct: 247 PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTE-PHVGGALLDMYAKCGDIEDAHA 305

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F+ +   +V+ W+ L++ Y      ++A   F +M +  + P+  +   +L AC++   
Sbjct: 306 IFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAF 365

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++ G +   +++ + G  +       ++D+  +   ++ ++E+   +  +   + W  ++
Sbjct: 366 LELG-EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSL-QDANEVSWNTII 423

Query: 639 NG 640
            G
Sbjct: 424 VG 425



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 227/529 (42%), Gaps = 88/529 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++       +P+ A   F +M   G+ P+ +     LKA   L S+  G  +H    
Sbjct: 217 WTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSV 276

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + +D+   V  AL+ MYA+C  +  A  +F+ +      D++ W+ +++ YAQS   E 
Sbjct: 277 KTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHD---DVILWSFLISRYAQSCQNEQ 333

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
              +F RM     V  +  SL   L ACA++     G+Q                     
Sbjct: 334 AFEMFLRMMRSFVVPNE-FSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALM 392

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                C  ME + ++F  ++  + VSWN ++ GY + G  EDA ++F +MR  ++    V
Sbjct: 393 DMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQV 452

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           T+S+V                                   L  CA+  ++    + H   
Sbjct: 453 TFSSV-----------------------------------LRACANTSSIKHAVQIHSLI 477

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K   +      +D +V N+LID YAKC  +  A  +F++I     DV +W  +I +Y+ 
Sbjct: 478 EKSTFN------NDTIVCNSLIDTYAKCGFIRDALKVFESIVEC--DVVSWNSIISAYAL 529

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G A +AL LF +M + D  +K N  T    L  C     +  G  +   ++ +    + 
Sbjct: 530 HGRATNALELFDRMNKSD--IKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHR--IK 585

Query: 497 PFVAN--CLIDMYSRSGDI-DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           P + +  C++ +  R+G + D  + + D     + + W +L++   +H       +A ++
Sbjct: 586 PSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEK 645

Query: 554 MRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSM-----SKEFGIS 596
           +    + P D  T+++L    + +G++D+   +  SM      KE G+S
Sbjct: 646 VLD--IEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLS 692



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 15/286 (5%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C + G    G+  H   ++R     G    D    N L++ YAK   +  AR +FD
Sbjct: 51  FLQRCIARGDARAGRAVHARVVQR----GGVAQLDTFCANVLLNFYAKLGPLATARRLFD 106

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  +NR   ++  ++  Y+  G   +AL LF ++ ++   V  N F L+  L     + 
Sbjct: 107 GMPERNR--VSFVTLMQGYALRGEFEEALELFRRLQREGHEV--NHFVLTTILKVLVTMD 162

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           A      IHA   +  ++    FV   LID YS  G +  AR VFD +  ++ V+WT+++
Sbjct: 163 APGLACGIHACACKLGHDR-NAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA--CSHSGMVDQGLKYFDSMSKEF 593
           + Y  + + + A   F +MR  G  P+       L A  C  S ++ +G+      S + 
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIH---GCSVKT 278

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
                      ++D+  +   +++A  + E +P +   I+W  L++
Sbjct: 279 LYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDV-ILWSFLIS 323



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           T++ + G  S+N  AN+AL           L K +++  +  L  C      R GR +HA
Sbjct: 10  TFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDARAGRAVHA 69

Query: 486 YVL-RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
            V+ R     L  F AN L++ Y++ G + TAR +FD + +RN VS+ +LM GY + G  
Sbjct: 70  RVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEF 129

Query: 545 DKAHWAFDQMRKEG 558
           ++A   F ++++EG
Sbjct: 130 EEALELFRRLQREG 143


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 396/736 (53%), Gaps = 27/736 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           VF +N L+R       P ++  +F  + +     P+  T+ F + A       R G  +H
Sbjct: 83  VFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIH 142

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 G DS + + + ++ MY +   +  AR++FD M +    D + WNT+++ Y ++ 
Sbjct: 143 GQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK---DTILWNTMISGYRKNE 199

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                + +F  +  +   + D  +L++ L A A L     G Q   +      +    V 
Sbjct: 200 MYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV- 258

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                   ++ YS+ G  +   ALF++ R    K ++V ++A+I GY   G    +L +F
Sbjct: 259 ----LTGFISLYSKCGKIKMGSALFREFR----KPDIVAYNAMIHGYTSNGETELSLSLF 310

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +++   G      TLVSL+      G L+L    H Y +K       S      V  AL 
Sbjct: 311 KELMLSGARLRSSTLVSLV---PVSGHLMLIYAIHGYCLKSNFLSHAS------VSTALT 361

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            +Y+K   ++ AR +FD    K+  + +W  MI  Y+QNG   DA++LF +M  Q     
Sbjct: 362 TVYSKLNEIESARKLFDESPEKS--LPSWNAMISGYTQNGLTEDAISLFREM--QKSEFS 417

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  T++C L ACA+L AL  G+ +H  V    +E  I +V+  LI MY++ G I  AR 
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSI-YVSTALIGMYAKCGSIAEARR 476

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD + ++N V+W ++++GYG+HG G +A   F +M   G+ P  VTFL +LYACSH+G+
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G + F+SM   +G     +HYAC+VD+LGRA  L  A++ IE M +EP   +W  LL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLL 596

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRIH +  L    + +L EL+ +  G + LLSNI++    +   A +R   K   + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG + ++  E    F  GD++HPQ ++IYE L  L  +++  GY P+T  ALHDV++EE
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +  ++  HSE+LA+A+G++ T PGT IRI KNLR+C DCH+    IS I    I++RD+N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDAN 776

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+G C+C  YW
Sbjct: 777 RFHHFKDGVCSCGDYW 792


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 288/851 (33%), Positives = 431/851 (50%), Gaps = 100/851 (11%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L   + L    + H  +I  N+       ++  YV     S A+ L  R+      V  W
Sbjct: 55  LPDARRLLLTDIAHPNVITHNV-------MLNGYVKLGRLSDAVELFGRMPAR--DVASW 105

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           N L+    + +    +   F+ M R G   P+ +TF + +K+CG L        +  ++ 
Sbjct: 106 NTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQ 165

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C------------------- 202
             G   +  V  AL+ M+ RC T+  A +LF  + +P I C                   
Sbjct: 166 KFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALE 225

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   D+VSWN +V+A +QSG     L +   M     V+ D  +  ++L+ACA L 
Sbjct: 226 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARLS 284

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
           +   GKQ        +V   +   D    +A+V  Y++ G F++A  +F  +       N
Sbjct: 285 SLRWGKQL-----HAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDR----N 335

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V W+ +IAG+ Q G   E++++F QM+   +  +   L +L+SGC S   L LG++ H 
Sbjct: 336 NVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS 395

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV-------------DV------------ 409
             +K            ++V N+LI MYAKC ++             D+            
Sbjct: 396 LCLK------SGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 410 ------ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
                 AR  FD ++ KN  V TW  M+G+Y Q+G   D L ++  M  + K V+P+  T
Sbjct: 450 VGNIAKAREFFDGMSTKN--VITWNAMLGAYIQHGAEEDGLRMYNVMLSE-KDVRPDWVT 506

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
                  CA L A + G QI    ++    +L   VAN +I MYS+ G I  AR VFD L
Sbjct: 507 YVTLFKGCADLGANKLGDQIIGRTVKVGL-ILDTSVANAVITMYSKCGRILEARKVFDFL 565

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
             +++VSW +++TGY  HG+G +A   FD + K G  PD ++++ +L  CSHSG+V +G 
Sbjct: 566 NVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGK 625

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YFD M +   IS   EH++C+VDLLGRA  L EA +LI+ MPM+PT  +W ALL+ C+I
Sbjct: 626 SYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKI 685

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N EL ELAA  + EL+S   GSY L++ IYA+AG+  D A+IR LM+  G+KK PG S
Sbjct: 686 HGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 745

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++       F   D +HPQ   I + L  L+++I  +GYV           D  + ++ 
Sbjct: 746 WMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRT---------DSPRSEI- 795

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+A+G+++     PI I KNLRICGDCH+ I  IS +   E ++RD+ RFHHF
Sbjct: 796 -HHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHF 854

Query: 824 KEGSCTCKGYW 834
             GSC+C  YW
Sbjct: 855 NGGSCSCGDYW 865



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 234/511 (45%), Gaps = 76/511 (14%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ-LFDEM 196
           F   L++CG   +     ++H  + + G  S VF+ N L+  Y  C  L  AR+ L  ++
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 197 FQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFA 228
             P +                             D+ SWNT+++ Y QS      L  F 
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            M        +  +   A+ +C +LG  S   Q                          C
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ A ++F R+K   +   N+M+ GY +    + A  LF  M +     +VV+W+ ++
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPER----DVVSWNMMV 242

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +  +Q G   EALD+   MQ  G+  +  T  S L+ CA + +L  GK+ H   I+ +  
Sbjct: 243 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPC 302

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +D        V +AL+++YAKC     A+ +F+++  +N     WTV+I  + Q+G   +
Sbjct: 303 IDP------YVASALVELYAKCGCFKEAKGVFNSLHDRNN--VAWTVLIAGFLQHGCFTE 354

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVAN 501
           ++ LF QM  + +L+  + F L+  +  C     L  GRQ+H+  L++ Q + ++  V+N
Sbjct: 355 SVELFNQM--RAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV--VSN 410

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI MY++  ++ +A  +F  + ++++VSWTS++T +   G   KA   FD M  + +  
Sbjct: 411 SLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV-- 468

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
             +T+  +L A    G  + GL+ ++ M  E
Sbjct: 469 --ITWNAMLGAYIQHGAEEDGLRMYNVMLSE 497



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 203/497 (40%), Gaps = 93/497 (18%)

Query: 29  FSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP---SHLIAAYVSHNAPSP 85
           ++ + T C +++SL  R  K L      H Q+I +NL  + P   S L+  Y        
Sbjct: 273 YTSSLTACARLSSL--RWGKQL------HAQVI-RNLPCIDPYVASALVELYAKCGCFKE 323

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +   +     +   W  LI   ++      +  LF QM       D++    ++  C
Sbjct: 324 AKGVFNSLHDR--NNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGC 381

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--- 202
                   G  +H++   SG    V V N+L++MYA+CD L  A  +F  M +  I    
Sbjct: 382 CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWT 441

Query: 203 -------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                                    ++++WN ++ AY Q G  E GL ++  M  +  V+
Sbjct: 442 SMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVR 501

Query: 238 GDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKV 271
            D V+ V     CA LG    G Q                          CG + EA+KV
Sbjct: 502 PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKV 561

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+ + VKD+VSWNAM+TGYS+ G  + A  +F  + +   K + +++ AV++G +  G  
Sbjct: 562 FDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLV 621

Query: 332 HEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
            E    F  M+    + P +     ++         LLG+  H    K ++      P  
Sbjct: 622 QEGKSYFDMMKRVHNISPGLEHFSCMVD--------LLGRAGHLTEAKDLIDEMPMKP-T 672

Query: 391 LMVINALIDMYAKCK-------SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
             V  AL+   + CK       +   A+ +F+  +P   D  ++ +M   Y+  G ++D+
Sbjct: 673 AEVWGALL---SACKIHGNNELAELAAKHVFELDSP---DSGSYMLMAKIYADAGKSDDS 726

Query: 444 LALFPQMFQQDKLVKPN 460
             +   M  +DK +K N
Sbjct: 727 AQIRKLM--RDKGIKKN 741


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/740 (36%), Positives = 406/740 (54%), Gaps = 35/740 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W++++   V+         +F QM+     PD  T   V +AC EL S R G SVH 
Sbjct: 166 VVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHG 225

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS-WNTIVAAYAQSG 218
            +     +SN  + N+L+ MY +   L  A +LF+ +  P  C + + W  +++ Y QSG
Sbjct: 226 YVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENV--P--CRMTAPWTPMISCYNQSG 281

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             +  L +FA+M  + K++ + V++V  L ACA LG    G+          +   M  +
Sbjct: 282 CFQEALNVFAKMQ-EFKMEPNQVTMVGVLCACARLGRVKEGRSV----HGFVIRRAMDPE 336

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                 A++  Y+  G+  D   +F+ ++++ +    ++W+ +I+ + + G   EAL +F
Sbjct: 337 LDFLGPALMELYADTGNLRDCHKVFETIKEKTI----LSWNTLISIFTRNGQPEEALLLF 392

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QMQ  GL P+  +L S LS C ++    LG + H Y IK      G+  D   V NALI
Sbjct: 393 VQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT-----GNFND--FVQNALI 445

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC  V  A  MF+ I  K + + TW  MI  +SQNG + +A+ LF QM+     VK
Sbjct: 446 DMYAKCGFVHSANKMFEKI--KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMN--CVK 501

Query: 459 PNAFTLSCALMACARLAALRFGRQIH----AYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
            +  T    + AC+ L  L  G+ +H     Y LR        ++   L DMYS+ G++ 
Sbjct: 502 MDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKD-----SYLDTALTDMYSKCGELQ 556

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A  VFD + +R++VSW+ ++ GYGMHG  +     F+QM   G+ P+ +TF+ +L ACS
Sbjct: 557 MAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACS 616

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H+G V++G  YF+SMS EFG+  + +H+AC+VDLL RA  L+ A ++I  +P      IW
Sbjct: 617 HAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIW 675

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALLNGCRIH  +++ +     LL++++   G YTLLSNIYA  G W    ++RS+MK  
Sbjct: 676 GALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSK 735

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PG S ++  +    F  GD +H Q++ IY  L      + A  Y  +   ++   
Sbjct: 736 GLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGT 795

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
               K + +  HSEKLA+A+GI+ T PGT +RI+KNLR+C DCHS     S I   EII+
Sbjct: 796 SKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIM 855

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD NRFH F+ GSC+C  YW
Sbjct: 856 RDLNRFHCFRNGSCSCNDYW 875



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/620 (28%), Positives = 309/620 (49%), Gaps = 33/620 (5%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L R+C + T +  +H  + +  L   PP  + LI +Y        +  +     P P S 
Sbjct: 7   LFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTF-PKPDS- 64

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHA 159
           F W  LI+  V     + A  L+ +M+ +       + FP VLKAC        G  VH 
Sbjct: 65  FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHG 124

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF+S+  V  +L+ MY     L  A + FD M    I D+V+W++IV  + Q+G 
Sbjct: 125 RVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTM---PIRDVVAWSSIVLNFVQNGQ 181

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
           A  GL +F++M  +  V+ D V++++   AC+ LG+   G+          V  R    +
Sbjct: 182 ASEGLDMFSQMISEA-VEPDSVTMLSVTEACSELGSLRLGRSV-----HGYVVRREIESN 235

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT-WSAVIAGYAQRGHGHEALDVF 338
               N+++  Y ++G    A  LF     ENV   +   W+ +I+ Y Q G   EAL+VF
Sbjct: 236 ASLNNSLIVMYGKLGDLYSAERLF-----ENVPCRMTAPWTPMISCYNQSGCFQEALNVF 290

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +MQ   +EPN VT+V +L  CA +G +  G+  H + I+R +      P+   +  AL+
Sbjct: 291 AKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMD-----PELDFLGPALM 345

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           ++YA   ++     +F+ I  K + + +W  +I  +++NG   +AL LF QM  Q + + 
Sbjct: 346 ELYADTGNLRDCHKVFETI--KEKTILSWNTLISIFTRNGQPEEALLLFVQM--QTQGLM 401

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P++++L+ +L AC  ++  + G QIH Y+++        FV N LIDMY++ G + +A  
Sbjct: 402 PDSYSLASSLSACGTISFSQLGAQIHGYIIKTGN--FNDFVQNALIDMYAKCGFVHSANK 459

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F+ +K++++V+W S++ G+  +G   +A   FDQM    +  D +TFL ++ ACSH G 
Sbjct: 460 MFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGY 519

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +++G K+       +G+   +     + D+  +   L  A  + + M  E + + W  ++
Sbjct: 520 LEKG-KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMI 577

Query: 639 NGCRIHANVELGELAANRLL 658
            G  +H  +       N++L
Sbjct: 578 AGYGMHGQINATISLFNQML 597



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 34/289 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN LI    R   P+ A  LF+QM  +G  PD Y+    L ACG +  S+ G+ +H
Sbjct: 368 TILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIH 427

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +G + N FV NAL+ MYA+C  +  A ++F+++ +     +V+WN+++  ++Q+G
Sbjct: 428 GYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEK---SLVTWNSMICGFSQNG 483

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
            +   + LF +M  +  V+ D ++ ++ + AC+ LG   +GK                  
Sbjct: 484 YSVEAITLFDQMYMNC-VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD 542

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG ++ A  VF+RM  + +VSW+ M+ GY   G      +LF +M    +K
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIK 602

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP---NVVTLVSLLS 358
            N +T+  +++  +  G   E    F  M   G+EP   +   +V LLS
Sbjct: 603 PNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLS 651


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/553 (41%), Positives = 340/553 (61%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  YS +GS + A  +F K R    K  +  W+A+       GHG E L ++ +M   G
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTR----KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG 173

Query: 346 LEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +E +  T   +L  C     +V  L+ GKE H +  +R  S   SH   + ++  L+DMY
Sbjct: 174 VESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYS---SH---VYIMTTLVDMY 227

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           A+   VD A  +F  +  +N  V +W+ MI  Y++NG A +AL  F +M ++ K   PN+
Sbjct: 228 ARFGCVDYASYVFGGMPVRN--VVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  G+ IH Y+LR   + ++P V + L+ MY R G ++  + VFD
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSILP-VISALVTMYGRCGKLEVGQRVFD 344

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  R+VVSW SL++ YG+HG G KA   F++M   G +P  VTF+ +L ACSH G+V++
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G + F++M ++ GI  + EHYAC+VDLLGRANRLDEA ++++ M  EP P +W +LL  C
Sbjct: 405 GKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSC 464

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A+ RL  LE +  G+Y LL++IYA A  W +V R++ L++H G++K PG
Sbjct: 465 RIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
             W++ +    +F   D  +P  ++I+  L  L + +K  GY+PQT   L++++ EEK  
Sbjct: 525 RCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKER 584

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLALA+G++ T+ G PIRITKNLR+C DCH    FIS  +  EI++RD NRFH
Sbjct: 585 IVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFH 644

Query: 822 HFKEGSCTCKGYW 834
            FK G C+C  YW
Sbjct: 645 RFKNGVCSCGDYW 657



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 167/365 (45%), Gaps = 48/365 (13%)

Query: 26  IKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSH 80
           I++ S  ++P  +   LL+  C    SL+    +H+ I+       P   + LI  Y   
Sbjct: 66  IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            +   A  +  +      +++ WNAL R        +    L+ +M R G   D +T+ +
Sbjct: 126 GSVDYARKVFDKTRKR--TIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTY 183

Query: 141 VLKACGELPSSRC-------GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           VLKAC    +S C       G  +HA +   G+ S+V++   L+ MYAR   + YA  +F
Sbjct: 184 VLKAC---VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-DGVSLVNALSACAS 252
             M    + ++VSW+ ++A YA++G A   L  F  M  + K    + V++V+ L ACAS
Sbjct: 241 GGM---PVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACAS 297

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
           L    +GK                          +CG +E  ++VF+RM  +DVVSWN++
Sbjct: 298 LAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSL 357

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           ++ Y   G  + A  +F++M         VT+ +V+   +  G   E   +F  M +  G
Sbjct: 358 ISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHG 417

Query: 346 LEPNV 350
           ++P +
Sbjct: 418 IKPQI 422



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 155/356 (43%), Gaps = 56/356 (15%)

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +D     D  +   LI MY+   SVD AR +FD    + R +  W  +  + +  G   +
Sbjct: 104 LDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT--RKRTIYVWNALFRALTLAGHGEE 161

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACA----RLAALRFGRQIHAYVLRNQYEMLIPF 498
            L L+ +M +    V+ + FT +  L AC      +  L  G++IHA++ R  Y   + +
Sbjct: 162 VLGLYWKMNRIG--VESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHV-Y 218

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE- 557
           +   L+DMY+R G +D A  VF  +  RNVVSW++++  Y  +G   +A   F +M +E 
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 278

Query: 558 -GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
              +P+ VT + +L AC+    ++QG K         G+ +     + +V + GR  +L+
Sbjct: 279 KDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLE 337

Query: 617 -------------------------------EAVELIEGM---PMEPTPIIWVALLNGCR 642
                                          +A+++ E M      PTP+ +V++L  C 
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACS 397

Query: 643 IHANVELGELAANRLLELESEKDG------SYTLLSNIYANAGRWKDVARIRSLMK 692
               VE G+    RL E      G       Y  + ++   A R  + A++   M+
Sbjct: 398 HEGLVEEGK----RLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMR 449



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 11/212 (5%)

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I S  + G    A+ +  Q         P+  T    ++ C   ++L    ++H ++L 
Sbjct: 52  LIQSLCKEGKLKQAIRVLSQE------SSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
           N  +   PF+A  LI MYS  G +D AR VFD  ++R +  W +L     + G G++   
Sbjct: 106 NGSDQ-DPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL---KYFDSMSKEFGISARAEHYACIV 606
            + +M + G+  D  T+  +L AC  S      L   K   +     G S+       +V
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLV 224

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           D+  R   +D A  +  GMP+    + W A++
Sbjct: 225 DMYARFGCVDYASYVFGGMPVRNV-VSWSAMI 255


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/553 (42%), Positives = 335/553 (60%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y  +GS + A  +F + R+  +      W+A+    A  G G E LD++ QM + G
Sbjct: 119 LINMYYELGSIDRARKVFDETRERTI----YVWNALFRALAMVGCGKELLDLYVQMNWIG 174

Query: 346 LEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  +  T   +L  C     SV  L  GKE H + ++        +  ++ V+  L+D+Y
Sbjct: 175 IPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRH------GYEANIHVMTTLLDVY 228

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK  SV  A  +F A+  KN    +W+ MI  +++N     AL LF  M  +     PN+
Sbjct: 229 AKFGSVSYANSVFCAMPTKN--FVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNS 286

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  G+ IH Y+LR   + ++P V N LI MY R G+I   + VFD
Sbjct: 287 VTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILP-VLNALITMYGRCGEILMGQRVFD 345

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           N+K R+VVSW SL++ YGMHG G KA   F+ M  +G +P  ++F+ +L ACSH+G+V++
Sbjct: 346 NMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEE 405

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G   F+SM  ++ I    EHYAC+VDLLGRANRLDEA++LIE M  EP P +W +LL  C
Sbjct: 406 GKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSC 465

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A+  L ELE    G+Y LL++IYA A  W +   +  L++  G++K PG
Sbjct: 466 RIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPG 525

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSW++ K    +F   D  +PQ ++I+ +L  L   +KA GYVPQT+  L+D+D+EEK  
Sbjct: 526 CSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKER 585

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLA+A+G++ T  G  IRI KNLR+C DCH+   FIS   N EI++RD NRFH
Sbjct: 586 IVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFH 645

Query: 822 HFKEGSCTCKGYW 834
           HFK+G C+C  YW
Sbjct: 646 HFKDGVCSCGDYW 658



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 199/419 (47%), Gaps = 34/419 (8%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           +P + TF  ++ +C +  S   G  VH  + SSGFD + F+   L+ MY    ++  AR+
Sbjct: 75  NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK 134

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FDE  +     I  WN +  A A  G  +  L L+ +M   + +  D  +    L AC 
Sbjct: 135 VFDETRER---TIYVWNALFRALAMVGCGKELLDLYVQMNW-IGIPSDRFTYTFVLKACV 190

Query: 252 ----SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
               S+    +GK     E    +       ++     ++  Y++ GS   A ++F  M 
Sbjct: 191 VSELSVSPLQKGK-----EIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMP 245

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE--PNVVTLVSLLSGCASVGA 365
            +    N V+WSA+IA +A+     +AL++F+ M     +  PN VT+V++L  CA + A
Sbjct: 246 TK----NFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAA 301

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK  H Y ++R L         L V+NALI MY +C  + + + +FD +  KNRDV 
Sbjct: 302 LEQGKLIHGYILRRGLD------SILPVLNALITMYGRCGEILMGQRVFDNM--KNRDVV 353

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  +I  Y  +G    A+ +F  M  Q     P+  +    L AC+    +  G+ +  
Sbjct: 354 SWNSLISIYGMHGFGKKAIQIFENMIHQGS--SPSYISFITVLGACSHAGLVEEGKILFE 411

Query: 486 YVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTGYGMH 541
            +L ++Y  + P + +  C++D+  R+  +D A +++ D   +     W SL+    +H
Sbjct: 412 SML-SKYR-IHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIH 468



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 135/277 (48%), Gaps = 17/277 (6%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSS--RCG 154
           +++ WNAL R    +        L++QM   G   D +T+ FVLKAC   EL  S  + G
Sbjct: 143 TIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKG 202

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +HA I   G+++N+ V   L+ +YA+  ++SYA  +F  M      + VSW+ ++A +
Sbjct: 203 KEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK---NFVSWSAMIACF 259

Query: 215 AQSGDAEGGLMLFARMTGDVKVQ-GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           A++      L LF  M  +      + V++VN L ACA L    +GK          +  
Sbjct: 260 AKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLI-----HGYILR 314

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
           R     +   NA++T Y R G       +F  M+  +V    V+W+++I+ Y   G G +
Sbjct: 315 RGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDV----VSWNSLISIYGMHGFGKK 370

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           A+ +F  M   G  P+ ++ +++L  C+  G +  GK
Sbjct: 371 AIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGK 407



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 26/217 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSSVHAV 160
           W+A+I    +  +P  A  LF  MM       P+  T   VL+AC  L +   G  +H  
Sbjct: 252 WSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGY 311

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I   G DS + V NAL+ MY RC  +   +++FD M      D+VSWN++++ Y   G  
Sbjct: 312 ILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNR---DVVSWNSLISIYGMHGFG 368

Query: 221 EGGLMLFARMTGDVKVQGDG---VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           +  + +F  M      QG     +S +  L AC+           G++EE K +FE M  
Sbjct: 369 KKAIQIFENMIH----QGSSPSYISFITVLGACS---------HAGLVEEGKILFESMLS 415

Query: 278 KDVV-----SWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           K  +      +  MV    R    ++A  L + M  E
Sbjct: 416 KYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFE 452



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P   T    + +CA+  +L  G  +H  ++ + ++   PF+A  LI+MY   G ID AR 
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQ-DPFLATKLINMYYELGSIDRARK 134

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD  ++R +  W +L     M G G +    + QM   G+  D  T+  +L AC  S +
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSEL 194

Query: 579 VDQGLKYFDSMSKEF---GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
               L+    +       G  A       ++D+  +   +  A  +   MP +   + W 
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK-NFVSWS 253

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKD--GSYTLLSNIYANAG 679
           A++  C     + +  L   +L+ LE+      S T+++ + A AG
Sbjct: 254 AMI-ACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAG 298


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/765 (33%), Positives = 406/765 (53%), Gaps = 45/765 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  + ALI    +    D A  LF  M+  G  P+EYTF  +L AC      + GS VH
Sbjct: 160 NVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVH 219

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++   G  S VF+CNALM +Y +C  L    +LF+EM +    DI SWNT++++  +  
Sbjct: 220 GIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPER---DITSWNTVISSLVKEF 276

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             +     F  M     ++ D  SL   L+ACA      +G+Q                 
Sbjct: 277 KYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVS 336

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG   +   +FE M ++DV++W  M+T Y   G  + A  +F KM     K
Sbjct: 337 SSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMP----K 392

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            N ++++AV+AG ++   G  AL++F +M   G+E +  TL S+++ C  + +  + ++ 
Sbjct: 393 RNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQI 452

Query: 373 HCYTIK-RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
             + +K  +LS       +  +  AL+DMY +C  ++ A  +F   + +N   A  T MI
Sbjct: 453 QGFVMKFGILS-------NSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMI 505

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y++NG  N+A++LF     +  +V     + S  L  C  +     G Q+H + L++ 
Sbjct: 506 CGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTS-ILSLCGSIGFHEMGMQMHCHALKSG 564

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             +    V N  + MYS+  ++D A  VF+ +  +++VSW  L+ G+ +H  GDKA   +
Sbjct: 565 L-ITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIW 623

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHS--GMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            +M K G+ PD +TF +++ A  H+   +VD     F SM  E  I    EHYA  + +L
Sbjct: 624 KKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVL 683

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
           GR   L+EA + I  MP+EP   +W ALLN CRI+ N  L +LAA  +L +E +   SY 
Sbjct: 684 GRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYI 743

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           L SN+Y+ +GRW    ++R  M+  G +K P  SW+  +    +F+  DR+HPQ + IY 
Sbjct: 744 LKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYS 803

Query: 730 ILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITK 789
            L  L+     +GYVP TSF L +V++ +K + LF HS KLA  +GIL T PG PI+I K
Sbjct: 804 GLEILILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVK 863

Query: 790 NLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           N+R+CGDCH+ + ++S++   +I+LRD++ FH F +G C+C  YW
Sbjct: 864 NVRLCGDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           +D+ + NALI  Y K   V  A  +F  ++  N  V ++T +I  +S++   ++A+ LF 
Sbjct: 128 EDIFLGNALISAYLKLGLVRDADKVFSGLSCPN--VVSYTALISGFSKSDWEDEAVELFF 185

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
            M   D  ++PN +T    L AC R    + G Q+H  V++      + F+ N L+ +Y 
Sbjct: 186 AML--DSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCV-FICNALMGLYC 242

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFL 567
           + G +D    +F+ + +R++ SW ++++        D+A   F  M+  +GL  D  +  
Sbjct: 243 KCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLS 302

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            LL AC+ S    +G +   +++ + G+ +     + ++    +    ++  +L E MP+
Sbjct: 303 TLLTACAGSVKPMKG-QQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPI 361

Query: 628 EPTPIIWVALLN 639
               I W  ++ 
Sbjct: 362 RDV-ITWTGMIT 372



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
             R +HA  L+ + ++   F+ N LI  Y + G +  A  VF  L   NVVS+T+L++G+
Sbjct: 115 LARAVHAQFLKLEEDI---FLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGF 171

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
                 D+A   F  M   G+ P+  TF+ +L AC  +     G       S+  GI  +
Sbjct: 172 SKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLG-------SQVHGIVVK 224

Query: 599 AEHYACI------VDLLGRANRLDEAVELIEGMP 626
               +C+      + L  +   LD  + L E MP
Sbjct: 225 LGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMP 258


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/720 (36%), Positives = 402/720 (55%), Gaps = 28/720 (3%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + A  LF ++ R G   + +    +LK    + +      +HA  C  G D N FV ++L
Sbjct: 132 EEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSL 191

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDV 234
           +  Y+ C  +S+AR +FD +      D V+W  +V+ Y+++   E  L  F+  RM G  
Sbjct: 192 IDAYSLCGAVSHARCVFDGIIWK---DAVTWTAMVSCYSENDIPEDALNTFSKMRMAG-- 246

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
             + +   L + L A   L +   GK  G+   A K     +        A++  Y++ G
Sbjct: 247 -AKPNPFVLTSVLKAAVCLSSAVLGK--GIHGCAVKTLCDTEPH---VGGALLDMYAKCG 300

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             EDA  +F+ +  ++V    + WS +I+ YAQ     +A ++F +M    + PN  +L 
Sbjct: 301 YIEDARTVFEIIPHDDV----ILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLS 356

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            +L  CA+V  L LG++ H   IK        +  +L V NAL+D+YAKC++++ +  +F
Sbjct: 357 GVLQACANVAFLDLGQQIHNLVIKL------GYESELFVGNALMDVYAKCRNMENSLEIF 410

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
            ++   N    +W  +I  Y Q+G A DAL++F +M  +   V     T S  L ACA  
Sbjct: 411 RSLRDANE--VSWNTIIVGYCQSGFAEDALSVFQEM--RAAHVLSTQVTFSSVLRACANT 466

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           A+++   QIH+ + ++ +      V N LID Y++ G I  A  VF+++ Q +VVSW ++
Sbjct: 467 ASIKHTVQIHSLIEKSTFNN-DTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAI 525

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++GY +HG    A   F++M K    P+ VTF+ LL  C  +G+V+QGL  F+SM+ +  
Sbjct: 526 ISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHR 585

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I    +HY CIV LLGRA RL++A++ I  +P  P+P++W ALL+ C +H NV LG+ +A
Sbjct: 586 IKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSA 645

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            ++LE+E + + +Y LLSN+YA AG    VA +R  M++ GVKK  G SWV+ K     F
Sbjct: 646 EKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAF 705

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
            VG   HP  + I  +L  L  +    GYVP  +  LHDVD+EEK  +L+ HSE+LALAY
Sbjct: 706 SVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAY 765

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G+  T PG PIRI KNLR C DCH+    IS I+  EI++RD NRFHHF EG C+C  YW
Sbjct: 766 GLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 230/501 (45%), Gaps = 32/501 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++       +P++A   F +M   G  P+ +    VLKA   L S+  G  +H    
Sbjct: 219 WTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAV 278

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  D+   V  AL+ MYA+C  +  AR +F+ +      D++ W+ +++ YAQS   E 
Sbjct: 279 KTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD---DVILWSFLISRYAQSYQNEQ 335

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              +F RM     V  +  SL   L ACA++     G+Q   +     V +     ++  
Sbjct: 336 AFEMFLRMMRSSVVPNE-FSLSGVLQACANVAFLDLGQQIHNL-----VIKLGYESELFV 389

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++  + E++  +F+ +R  N     V+W+ +I GY Q G   +AL VF++M+
Sbjct: 390 GNALMDVYAKCRNMENSLEIFRSLRDAN----EVSWNTIIVGYCQSGFAEDALSVFQEMR 445

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              +    VT  S+L  CA+  ++    + H    K   +      +D +V N+LID YA
Sbjct: 446 AAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFN------NDTIVCNSLIDTYA 499

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  A  +F++I     DV +W  +I  Y+ +G A DAL LF +M + D   KPN  
Sbjct: 500 KCGCIRDALKVFESII--QCDVVSWNAIISGYALHGRATDALELFNRMNKSD--TKPNDV 555

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFD 521
           T    L  C     +  G  +   +  +           C++ +  R+G ++ A + + D
Sbjct: 556 TFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGD 615

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVD 580
                + + W +L++   +H   + A   F   +   + P D  T+++L    + +G++D
Sbjct: 616 IPSTPSPMVWRALLSSCVVH--KNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILD 673

Query: 581 QGLKYFDSM-----SKEFGIS 596
           Q      SM      KE G+S
Sbjct: 674 QVALLRKSMRNIGVKKEVGLS 694



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 132/268 (49%), Gaps = 30/268 (11%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W+ LI R  +    + AF +FL+MMR    P+E++   VL+AC  +     G  +H 
Sbjct: 317 VILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHN 376

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           ++   G++S +FV NALM +YA+C  +  + ++F  +      + VSWNTI+  Y QSG 
Sbjct: 377 LVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDA---NEVSWNTIIVGYCQSGF 433

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
           AE  L +F  M     V    V+  + L ACA+  +     Q                  
Sbjct: 434 AEDALSVFQEMRA-AHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCN 492

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG + +A KVFE +   DVVSWNA+++GY+  G   DA  LF +M + + K 
Sbjct: 493 SLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKP 552

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           N VT+ A+++     G  ++ L +F  M
Sbjct: 553 NDVTFVALLSVCGSTGLVNQGLSLFNSM 580



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 172/362 (47%), Gaps = 17/362 (4%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D    N ++  Y+++G    A  LF  M + N+    V++  ++ GYA RG   EA  +F
Sbjct: 83  DTFCANVLLNLYAKLGPLAAARRLFDGMPERNM----VSFVTLVQGYALRGGFEEAAGLF 138

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R++Q  G E N   L ++L    ++ A  L    H    K        H  +  V ++LI
Sbjct: 139 RRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKL------GHDRNAFVGSSLI 192

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y+ C +V  AR +FD I  K  D  TWT M+  YS+N    DAL  F +M       K
Sbjct: 193 DAYSLCGAVSHARCVFDGIIWK--DAVTWTAMVSCYSENDIPEDALNTFSKMRMAG--AK 248

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN F L+  L A   L++   G+ IH   ++   +   P V   L+DMY++ G I+ AR 
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTE-PHVGGALLDMYAKCGYIEDART 307

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF+ +   +V+ W+ L++ Y      ++A   F +M +  + P+  +   +L AC++   
Sbjct: 308 VFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAF 367

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D G +  + + K  G  +       ++D+  +   ++ ++E+   +  +   + W  ++
Sbjct: 368 LDLGQQIHNLVIK-LGYESELFVGNALMDVYAKCRNMENSLEIFRSL-RDANEVSWNTII 425

Query: 639 NG 640
            G
Sbjct: 426 VG 427



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 131/291 (45%), Gaps = 25/291 (8%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL  C + G    G+  H   ++R     G    D    N L+++YAK   +  AR +FD
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQR----GGVAQLDTFCANVLLNLYAKLGPLAAARRLFD 108

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  +N  + ++  ++  Y+  GG  +A  LF ++ ++   V  N F L+  L     + 
Sbjct: 109 GMPERN--MVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEV--NHFVLTTILKVLVAMD 164

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           A      IHA   +  ++    FV + LID YS  G +  AR VFD +  ++ V+WT+++
Sbjct: 165 APGLTCCIHACACKLGHDR-NAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA--CSHSGMVDQGL-----KYFDS 588
           + Y  + + + A   F +MR  G  P+      +L A  C  S ++ +G+     K    
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
                G          ++D+  +   +++A  + E +P +   I+W  L++
Sbjct: 284 TEPHVG--------GALLDMYAKCGYIEDARTVFEIIPHDDV-ILWSFLIS 325



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 41/299 (13%)

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL-RNQYEM 494
           +N  AN AL           L K +++  +  L  C      R GR +HA V+ R     
Sbjct: 22  RNLAANAALQWLDDELASLALPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQ 81

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           L  F AN L+++Y++ G +  AR +FD + +RN+VS+ +L+ GY + G  ++A   F ++
Sbjct: 82  LDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRL 141

Query: 555 RKEG---------------LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           ++EG               +A D       ++AC+     D+      S+   + +    
Sbjct: 142 QREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAV 201

Query: 600 EHYACIVDLL---------------GRANRLDEAVELIEGMPM---EPTPIIWVALLNGC 641
            H  C+ D +                  +  ++A+     M M   +P P +  ++L   
Sbjct: 202 SHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAA 261

Query: 642 RIHANVELGE----LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
              ++  LG+     A   L + E    G+   L ++YA  G  +D   +  ++ H  V
Sbjct: 262 VCLSSAVLGKGIHGCAVKTLCDTEPHVGGA---LLDMYAKCGYIEDARTVFEIIPHDDV 317


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/556 (41%), Positives = 354/556 (63%), Gaps = 17/556 (3%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V  N ++  Y++ GS E+A  LF KM  +++    V+W+ +I+GY+Q G   EAL +F
Sbjct: 139 DLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDM----VSWTVLISGYSQSGQASEALALF 194

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M   G +PN  TL SLL    +  +   G++ H +++K    ++      + V ++L+
Sbjct: 195 PKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMN------VHVGSSLL 248

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYA+   +  A+V+F+++A KN  V +W  +I  +++ G     + LF QM +Q    +
Sbjct: 249 DMYARWAHMREAKVIFNSLAAKN--VVSWNALIAGHARKGEGEHVMRLFXQMLRQG--FE 304

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P  FT S +++ACA   +L  G+ +HA+V+++  +  I ++ N LIDMY++SG I  A+ 
Sbjct: 305 PTHFTYS-SVLACASSGSLEQGKWVHAHVIKSGGQP-IAYIGNTLIDMYAKSGSIKDAKK 362

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF  L ++++VSW S+++GY  HGLG +A   F+QM K  + P+ +TFL +L ACSHSG+
Sbjct: 363 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 422

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D+G  YF+ M K+  I A+  H+  +VDLLGRA RL+EA + IE MP++PT  +W ALL
Sbjct: 423 LDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR+H N++LG  AA ++ EL+    G + LLSNIYA+AGR  D A++R +MK +GVKK
Sbjct: 482 GACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 541

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P CSWV+ +     F   D +HP  ++I  +   +  +IK +GYVP TS  L  ++ ++
Sbjct: 542 EPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQD 601

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEKLALA+ +L T PG  IRI KN+RICGDCHSA  F S ++  EII+RD+N
Sbjct: 602 RELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTN 661

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHF  G C+C+ YW
Sbjct: 662 RFHHFLHGMCSCRDYW 677



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 201/449 (44%), Gaps = 78/449 (17%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+   +  +L  C  L   + G ++HA I SS F+ ++ + N ++ MYA+C +L  A+ L
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD+M      D+VSW  +++ Y+QSG A   L LF +M   +  Q +  +L + L A  +
Sbjct: 163 FDKM---PTKDMVSWTVLISGYSQSGQASEALALFPKML-HLGFQPNEFTLSSLLKASGT 218

Query: 253 LGTWSRGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAM 286
             +   G+Q                             M EAK +F  +  K+VVSWNA+
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G++R G  E    LF +M                                RQ    G 
Sbjct: 279 IAGHARKGEGEHVMRLFXQM-------------------------------LRQ----GF 303

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           EP   T  S+L+ CAS G+L  GK  H + IK      G  P    + N LIDMYAK  S
Sbjct: 304 EPTHFTYSSVLA-CASSGSLEQGKWVHAHVIK-----SGGQP-IAYIGNTLIDMYAKSGS 356

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  A+ +F  +    +D+ +W  +I  Y+Q+G   +AL LF QM +    V+PN  T   
Sbjct: 357 IKDAKKVFRRLV--KQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK--VQPNEITFLS 412

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L AC+    L  G+     + +++ E  +      ++D+  R+G ++ A    + +  +
Sbjct: 413 VLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVT-VVDLLGRAGRLNEANKFIEEMPIK 471

Query: 527 NVVS-WTSLMTGYGMHGLGDKAHWAFDQM 554
              + W +L+    MH   D   +A +Q+
Sbjct: 472 PTAAVWGALLGACRMHKNMDLGVYAAEQI 500



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 144/286 (50%), Gaps = 38/286 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI    +      A  LF +M+  G+ P+E+T   +LKA G  PS   G  +HA   
Sbjct: 174 WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSL 233

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D NV V ++L+ MYAR   +  A+ +F+ +      ++VSWN ++A +A+ G+ E 
Sbjct: 234 KYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL---AAKNVVSWNALIAGHARKGEGEH 290

Query: 223 GLMLFARMTGDVKVQGDGVS--LVNALSACASLGTWSRGK-------------------- 260
            + LF +M      QG   +    +++ ACAS G+  +GK                    
Sbjct: 291 VMRLFXQMLR----QGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNT 346

Query: 261 ------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                 + G +++AKKVF R+  +D+VSWN++++GY++ G   +A  LF++M +  V+ N
Sbjct: 347 LIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPN 406

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
            +T+ +V+   +  G   E    F  M+   +E  V   VT+V LL
Sbjct: 407 EITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLL 452



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 133/273 (48%), Gaps = 24/273 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNALI    R    ++  RLF QM+R+G+ P  +T+  VL AC    S   G  VH
Sbjct: 271 NVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVH 329

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  SG     ++ N L+ MYA+  ++  A+++F  + +    DIVSWN+I++ YAQ G
Sbjct: 330 AHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ---DIVSWNSIISGYAQHG 386

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF +M    KVQ + ++ ++ L+AC+           G+++E +  FE MK  
Sbjct: 387 LGAEALQLFEQML-KAKVQPNEITFLSVLTACS---------HSGLLDEGQYYFELMKKH 436

Query: 279 DVVSWNA----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            + +  A    +V    R G   +A    ++M    +K     W A++   A R H +  
Sbjct: 437 KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEM---PIKPTAAVWGALLG--ACRMHKNMD 491

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGC-ASVGAL 366
           L V+   Q   L+P+      LLS   AS G L
Sbjct: 492 LGVYAAEQIFELDPHDSGPHVLLSNIYASAGRL 524


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/667 (37%), Positives = 390/667 (58%), Gaps = 49/667 (7%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           D L YA  +F+ + +P   + + WN +   +A S D    L L+  M   + +  +  + 
Sbjct: 23  DGLPYAISVFETIPEP---NQLIWNIMFRGHALSSDPVSALKLYVVMIS-LGLLPNFFTF 78

Query: 244 VNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERMKV 277
              L +CA   T+  G+Q                           G +E+A+KVF+R   
Sbjct: 79  PFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSH 138

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +DVVS+ A++TGY+  G  E A    +KM  E    +VV+W+A+I+GYA+ G+  +AL++
Sbjct: 139 RDVVSYTALITGYASRGYIESA----QKMFDEIPIKDVVSWNAMISGYAETGNYKKALEL 194

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F++M    ++P+  T+ +++S CA  G++ LG++ H +        D     +L ++NAL
Sbjct: 195 FKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWI------NDHGFGSNLKIVNAL 248

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ID+Y+KC  V+ A  + + ++  N+DV +W  +IG Y+      +AL LF +M +  +  
Sbjct: 249 IDLYSKCGEVETACELLEGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 304

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN---CLIDMYSRSGDID 514
            PN  T+   L ACA L A+  GR IH Y+ +    +++   ++    LIDMY++ GDID
Sbjct: 305 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364

Query: 515 TARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            A  V D+    R++ +W +++ G+ MHG  + A   F +MRK G+ PD +TF+ LL AC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SHSGM+D G   F SM +++ I+ + EHY C++DLLG +    EA E+I  MPMEP  +I
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 484

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W +LL  C+IH N+ELGE  A +L+++E E  GSY LLSNIYA AG+W +V +IR+L+  
Sbjct: 485 WCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLND 544

Query: 694 TGVKKR-PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
            G+KK+ PGCS ++       F +GD+ HPQ+++IY +L  +   ++  G+VP TS  L 
Sbjct: 545 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 604

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           ++++E K   L  HSEKLA+A+G+++T PGT + I KNLR+C +CH A   IS I   EI
Sbjct: 605 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 664

Query: 813 ILRDSNR 819
           I RD  R
Sbjct: 665 IARDRTR 671



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 149/549 (27%), Positives = 255/549 (46%), Gaps = 107/549 (19%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A+S+ + I P P  + W N + R       P +A +L++ M+  G  P+ +TFPF+LK+C
Sbjct: 28  AISVFETI-PEPNQLIW-NIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSC 85

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD----------- 194
            +  + + G  +H  +   GFD +++V  +L++MYA+   L  A+++FD           
Sbjct: 86  AKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYT 145

Query: 195 ----------------EMF-QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                           +MF +  I D+VSWN +++ YA++G+ +  L LF  M     V+
Sbjct: 146 ALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM-KTNVK 204

Query: 238 GDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKV 271
            D  ++   +SACA  G+   G+Q                          CG +E A ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            E +  KDV+SWN ++ GY+ +  +++A  LF++M +                       
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS---------------------- 302

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
                        G  PN VT++S+L  CA +GA+ +G+  H Y  K++  V  ++   L
Sbjct: 303 -------------GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSL 349

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
               +LIDMYAKC  +D A  + D+ A  NR ++TW  MI  ++ +G AN A  +F +M 
Sbjct: 350 RT--SLIDMYAKCGDIDAAPQVSDSSA-FNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR 406

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSR 509
           +    ++P+  T    L AC+    L  GR I    +R  Y  + P + +  C+ID+   
Sbjct: 407 KNG--IEPDDITFVGLLSACSHSGMLDLGRNIFR-SMRQDYN-ITPKLEHYGCMIDLLGH 462

Query: 510 SGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVT 565
           SG    A  + + +  + + V W SL+    +HG   LG+   +A   ++ E   P    
Sbjct: 463 SGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGES--FAKKLIKIEPENPGSYV 520

Query: 566 FLVLLYACS 574
            L  +YA +
Sbjct: 521 LLSNIYATA 529



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 147/369 (39%), Gaps = 54/369 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y        A  LL+ +S     V  WN LI     + L   A  LF +M+R G  
Sbjct: 248 LIDLYSKCGEVETACELLEGLSNK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA------LMAMYARCDTL 186
           P++ T   +L AC  L +   G  +H  I        V V NA      L+ MYA+C  +
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKL--KGVVVTNASSLRTSLIDMYAKCGDI 363

Query: 187 SYARQLFD-EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
             A Q+ D   F   +    +WN ++  +A  G A     +F+RM  +  ++ D ++ V 
Sbjct: 364 DAAPQVSDSSAFNRSLS---TWNAMIFGFAMHGRANAAFDIFSRMRKN-GIEPDDITFVG 419

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFEDAF 300
            LSAC+           GM++  + +F  M+        +  +  M+      G F++A 
Sbjct: 420 LLSACS---------HSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAE 470

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            +   M  E    + V W +++   A + HG+  L      +   +EP       LLS  
Sbjct: 471 EMINTMPMEP---DGVIWCSLLK--ACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNI 525

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF-----D 415
            +      GK      I+ +L+  G           +      C S+++  V+      D
Sbjct: 526 YATA----GKWNEVXKIRTLLNDKG-----------MKKKVPGCSSIEIDSVVHEFIIGD 570

Query: 416 AIAPKNRDV 424
            + P+NR++
Sbjct: 571 KLHPQNREI 579


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/687 (36%), Positives = 388/687 (56%), Gaps = 47/687 (6%)

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
           A ++    L YAR++FD++ QP   ++ SWN ++ A A S D    +++F RM  D    
Sbjct: 181 AAFSSFSALDYARKVFDQIPQP---NLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFG 237

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            +  +    + A A    +  GK    M   K  F      DV   N+++  Y+  G  +
Sbjct: 238 PNKFTFPVLIKAVAERRCFLVGKAVHGMA-IKTSFG----DDVFVLNSLIHFYASCGHLD 292

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A+ +F+ +   N   ++V+W++++ G+ Q G+  +ALD+F +M+  G+ PN VT+VS++
Sbjct: 293 LAYLVFEMIEGNNK--DIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVM 350

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
           S CA    L LG++   Y  +  + ++      L V NA IDM+ KC  V++AR +FD +
Sbjct: 351 SACAKTMNLTLGRKVCDYIDRNEMMMN------LNVCNATIDMFVKCGEVEIARGLFDNM 404

Query: 418 APKN-----------------------------RDVATWTVMIGSYSQNGGANDALALFP 448
             ++                             +D+  W V+I  Y Q+G   +ALA+F 
Sbjct: 405 EKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFR 464

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           ++       +P+  TL   L ACA+L A+  G  IH Y+ + + + L   +A  LIDMYS
Sbjct: 465 ELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQ-LNRNLATSLIDMYS 523

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           +SGD++ A  VF ++  ++V  W++++ G  MHG G+ A   F  M++  + P+ VTF  
Sbjct: 524 KSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTN 583

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           LL ACSHSG+VD+G + FD M + +G+  + +HY+C+VD+LGRA  L+EA++ IEGMP+ 
Sbjct: 584 LLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLA 643

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           P+  +W ALL  C IH N+EL E A +RLLE+E    G+Y LLSN+YA  G W+ V+ +R
Sbjct: 644 PSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELR 703

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
             M+ +G+KK  GCS ++       F VGD  HP S+ IY  L  ++ R+++ GYV  T 
Sbjct: 704 QQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTL 763

Query: 749 FALHDVDDEE-KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
             L  V++EE K   L  HSEK+A+A+G++       IRI KNLR+C DCH+    +S +
Sbjct: 764 CMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKV 823

Query: 808 INHEIILRDSNRFHHFKEGSCTCKGYW 834
              +I+LRD  RFHHF  G C+C+ YW
Sbjct: 824 YGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 165/544 (30%), Positives = 275/544 (50%), Gaps = 59/544 (10%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLI--AAYVSHNAPSPALSLLQRISPSPF 98
           L +QC S  Q+  IH Q++  N  H P   S L   AA+ S +A   A  +  +I P P 
Sbjct: 145 LFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQI-PQP- 202

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSV 157
           +++ WN LIR       P  +  +F++M+    + P+++TFP ++KA  E      G +V
Sbjct: 203 NLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAV 262

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H +   + F  +VFV N+L+  YA C  L  A  +F EM +    DIVSWN++V  + Q 
Sbjct: 263 HGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF-EMIEGNNKDIVSWNSMVTGFVQG 321

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------- 260
           G  +  L LF RM  +  V  + V++V+ +SACA     + G+                 
Sbjct: 322 GYPDKALDLFERMRNE-GVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNV 380

Query: 261 ---------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                    +CG +E A+ +F+ M+ +DVVSW  ++ GY+++     A  +F  M ++++
Sbjct: 381 CNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDI 440

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLSGCASVGALLLG 369
                 W+ +I+GY Q G   EAL +FR++Q    G  P+ VTL+S LS CA +GA+ +G
Sbjct: 441 P----AWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           +  H Y  K  + ++ +      +  +LIDMY+K   V+ A  +F +I   N+DV  W+ 
Sbjct: 497 EWIHGYIKKERIQLNRN------LATSLIDMYSKSGDVEKAIEVFHSIG--NKDVFVWSA 548

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI   + +G    A+ LF  M  Q+  VKPN+ T +  L AC+    +  G+++   + R
Sbjct: 549 MIAGLAMHGRGEAAIELFLDM--QETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMER 606

Query: 490 NQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHG---L 543
                ++P   +  C++D+  R+G ++ A    + +      S W +L+    +HG   L
Sbjct: 607 --VYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLEL 664

Query: 544 GDKA 547
            +KA
Sbjct: 665 AEKA 668


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 261/692 (37%), Positives = 391/692 (56%), Gaps = 46/692 (6%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+  G +PD   FP VLK+C  +   R G SVH  I   G   +++ CNALM MY++  +
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 186 LSYA--RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           L     ++  D     GI +       +   + S D      L  R+ G +   GD   +
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPRE----IGKCSNSHDLP--CELDERVAG-IDQNGDLNQM 113

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
            N L    +                KKVF+  K  DV S     + Y  +GS    F + 
Sbjct: 114 SNILYQVNTY---------------KKVFDEGKTSDVYSKKEKESYY--LGSLRKVFEMM 156

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            K        ++V+W+ VI+G AQ G   +AL + R+M    L P+  TL S+L   A  
Sbjct: 157 PKR-------DIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA-RVMFDAIAPKNR 422
             LL GKE H Y I+        +  D+ + ++LIDMYAKC  VD + RV +  + P++ 
Sbjct: 210 VNLLKGKEIHGYAIR------NGYDADVFIGSSLIDMYAKCTRVDDSCRVFY--MLPQH- 260

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           D  +W  +I    QNG  ++ L  F QM      +KPN  + S  + ACA L  L  G+Q
Sbjct: 261 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPACAHLTTLHLGKQ 318

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +H Y++R++++  + F+A+ L+DMY++ G+I TAR +FD ++  ++VSWT+++ GY +HG
Sbjct: 319 LHGYIIRSRFDGNV-FIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHG 377

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
               A   F +M  EG+ P+ V F+ +L ACSH+G+VD+  KYF+SM++++ I    EHY
Sbjct: 378 HAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHY 437

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           A + DLLGR  RL+EA E I  M +EPT  +W  LL  CR+H N+EL E  + +L  ++ 
Sbjct: 438 AAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDP 497

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           +  G+Y LLSNIY+ AGRWKD  ++R  M+  G+KK+P CSW++ K     F  GD++HP
Sbjct: 498 QNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 557

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
              +I E L  L+++++  GYV  T+  LHDV++E+K  LL  HSE+LA+ +GI++T  G
Sbjct: 558 YYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAG 617

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           T IR+TKNLR+C DCH+A  FIS I+  EI+ 
Sbjct: 618 TTIRVTKNLRVCVDCHTATKFISKIVGREIVF 649



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 201/453 (44%), Gaps = 62/453 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +  + ++A  +  +M      PD +T   VL    E  +   G  +H    
Sbjct: 164 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 223

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+D++VF+ ++L+ MYA+C  +  + ++F  + Q    D +SWN+I+A   Q+G  + 
Sbjct: 224 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH---DGISWNSIIAGCVQNGMFDE 280

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
           GL  F +M    K++ + VS  + + ACA L T   GKQ                     
Sbjct: 281 GLKFFQQML-IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALV 339

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                CG +  A+ +F++M++ D+VSW AM+ GY+  G   DA +LFK+M  E VK N V
Sbjct: 340 DMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYV 399

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
            + AV+   +  G   EA   F  M Q   + P +    ++      VG L   +E + +
Sbjct: 400 AFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL---EEAYEF 456

Query: 376 TIKRVLSVDGSHPDDLMV---INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                +   GS    L+    ++  I++  K     V++ +F  + P+N  +  + ++  
Sbjct: 457 ISDMHIEPTGSVWSTLLAACRVHKNIELAEK-----VSKKLF-TVDPQN--IGAYVLLSN 508

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ- 491
            YS  G   DA  L   M  +    KP          AC   + +    ++HA+V  ++ 
Sbjct: 509 IYSAAGRWKDARKLRIAMRDKGMKKKP----------AC---SWIEIKNKVHAFVAGDKS 555

Query: 492 --YEMLIPFVANCLIDMYSRSGDI-DTARVVFD 521
             Y   I      L++   R G + DT  V+ D
Sbjct: 556 HPYYDRINEALKVLLEQMEREGYVLDTTEVLHD 588


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/698 (36%), Positives = 396/698 (56%), Gaps = 29/698 (4%)

Query: 145 CGELPSSRCGSS-------VHAVICSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           CG L  S   S        +HA + + G    N ++   L A YA C  + YA+ +FD++
Sbjct: 25  CGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQI 84

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
               + +   WN+++  YA +      L L+ +M      + D  +    L AC  L   
Sbjct: 85  V---LKNSFLWNSMIRGYACNNSPSRALFLYLKML-HFGQKPDNFTYPFVLKACGDLLLR 140

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
             G++   +     + E     DV   N++++ Y + G  E A  +F +M    +  ++ 
Sbjct: 141 EMGRKVHALVVVGGLEE-----DVYVGNSILSMYFKFGDVEAARVVFDRM----LVRDLT 191

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+ +++G+ + G    A +VF  M+  G   +  TL++LLS C  V  L +GKE H Y 
Sbjct: 192 SWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           ++   + +     +  ++N++IDMY  C+SV  AR +F+ +  K  DV +W  +I  Y +
Sbjct: 252 VR---NGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVK--DVVSWNSLISGYEK 306

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G A  AL LF +M     +  P+  T+   L AC +++ALR G  + +YV++  Y + +
Sbjct: 307 CGDAFQALELFGRMVVVGAV--PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNV 364

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             V   LI MY+  G +  A  VFD + ++N+ + T ++TG+G+HG G +A   F +M  
Sbjct: 365 -VVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLG 423

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
           +G+ PD   F  +L ACSHSG+VD+G + F  M++++ +  R  HY+C+VDLLGRA  LD
Sbjct: 424 KGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLD 483

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           EA  +IE M ++P   +W ALL+ CR+H NV+L  ++A +L EL  +    Y  LSNIYA
Sbjct: 484 EAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYA 543

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
              RW+DV  +R+L+    ++K P  S+V+  +    FFVGD +H QS  IY  L  L +
Sbjct: 544 AERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNE 603

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           ++K  GY P TS  L+DV++E K  +L++HSE+LALA+ ++ T PGT IRITKNLR+CGD
Sbjct: 604 QLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGD 663

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CH+ I  IS + N EII+RD  RFHHF++G C+C GYW
Sbjct: 664 CHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 168/577 (29%), Positives = 277/577 (48%), Gaps = 90/577 (15%)

Query: 30  SVTTTPCIKITSLL--LRQCKSLTQVYLIHQQII----VQNLTHVPPSHLIAAYVSHNAP 83
           S +T   ++  +LL  L   KSLTQ   +H  +     ++  T++  + L A Y      
Sbjct: 16  STSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLA-TKLAACYAVCGHM 74

Query: 84  SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
             A  +  +I     + F WN++IR       P  A  L+L+M+  G  PD +T+PFVLK
Sbjct: 75  PYAQHIFDQIVLK--NSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLK 132

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           ACG+L     G  VHA++   G + +V+V N++++MY +   +  AR +FD M    + D
Sbjct: 133 ACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRML---VRD 189

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-- 261
           + SWNT+++ + ++G+A G   +F  M  D  V GD  +L+  LSAC  +     GK+  
Sbjct: 190 LTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFV-GDRTTLLALLSACGDVMDLKVGKEIH 248

Query: 262 ---------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                      C  +  A+K+FE ++VKDVVSWN++++GY + G
Sbjct: 249 GYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCG 308

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
              DAF                                +AL++F +M   G  P+ VT++
Sbjct: 309 ---DAF--------------------------------QALELFGRMVVVGAVPDEVTVI 333

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L+ C  + AL LG     Y +KR   V      +++V  ALI MYA C S+  A  +F
Sbjct: 334 SVLAACNQISALRLGATVQSYVVKRGYVV------NVVVGTALIGMYANCGSLVCACRVF 387

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +  KN  +   TVM+  +  +G   +A+++F +M    K V P+    +  L AC+  
Sbjct: 388 DEMPEKN--LPACTVMVTGFGIHGRGREAISIFYEML--GKGVTPDEGIFTAVLSACSHS 443

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTS 533
             +  G++I   + R+      P   +CL+D+  R+G +D A  V +N+K + N   WT+
Sbjct: 444 GLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTA 503

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           L++   +H     A  +  ++ +  L PDGV+  V L
Sbjct: 504 LLSACRLHRNVKLAVISAQKLFE--LNPDGVSGYVCL 538


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/677 (38%), Positives = 386/677 (57%), Gaps = 37/677 (5%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           D NVF  NA++A YA+      A QLFD++ +P   D+VS+NT+++AYA  G+    L L
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEP---DLVSYNTLISAYADCGETAPALGL 127

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN-A 285
           F+ M  ++ +  DG +L   ++AC            G++ +   V         VS N A
Sbjct: 128 FSGMR-EMGLDMDGFTLSAVITACCD--------DVGLIGQLHSVAVSSGFDSYVSVNNA 178

Query: 286 MVTGYSRIGSFEDAFALFKKM---RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           ++T Y + G  +DA  +F  M   R E      V+W+++I  Y Q   G +AL +F++M 
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDE------VSWNSMIVAYGQHQEGSKALGLFQEMV 232

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             GL  ++ TL S+L+    +  L  G + H   IK      G H +   V + LID+Y+
Sbjct: 233 RRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-----GFHQNS-HVGSGLIDLYS 286

Query: 403 KCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG-ANDALALFPQMFQQDKLVKPN 460
           KC   +   R +F+ I     D+  W  M+  YSQN     DAL  F QM  Q    +PN
Sbjct: 287 KCGGGMSDCRKVFEEITEP--DLVLWNTMVSGYSQNEEFLEDALECFRQM--QGIGYRPN 342

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             +  C + AC+ L++   G+QIH+  L++        V N LI MYS+ G++  AR +F
Sbjct: 343 DCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF 402

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D + + N VS  S++ GY  HG+  ++   F  M +  +AP  +TF+ +L AC+H+G V+
Sbjct: 403 DRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVE 462

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G  YF+ M ++F I   AEHY+C++DLLGRA +L EA  LI  MP  P  I W +LL  
Sbjct: 463 EGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGA 522

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR H N+EL   AAN++L+LE      Y +LSN+YA+AGRW++VA +R  M+  GVKK+P
Sbjct: 523 CRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKP 582

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++ K+    F   D +HP  ++IYE L  +  ++K  GYVP   +AL   D    G
Sbjct: 583 GCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGG 642

Query: 761 D---LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +    L  HSEKLA+A+G+++T  G P+ + KNLRICGDCH+AI FIS I   EI +RD+
Sbjct: 643 EKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 818 NRFHHFKEGSCTCKGYW 834
           +RFH FKEG C+C  YW
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 230/554 (41%), Gaps = 89/554 (16%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           LL  +C  L       Q I   N+     + +IAAY   + P  A  L  +I P P  + 
Sbjct: 51  LLYSKCGRLAWARKAFQDISDPNVFSF--NAIIAAYAKESRPLIAHQLFDQI-PEP-DLV 106

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            +N LI           A  LF  M   G   D +T   V+ AC +         +H+V 
Sbjct: 107 SYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVA 164

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            SSGFDS V V NAL+  Y +   L  A+++F  M   GI D VSWN+++ AY Q  +  
Sbjct: 165 VSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM--GGIRDEVSWNSMIVAYGQHQEGS 222

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
             L LF  M     +  D  +L + L+A   L   S G Q                    
Sbjct: 223 KALGLFQEMV-RRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGL 281

Query: 262 ------C-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF-EDAFALFKKMRQENVKL 313
                 C G M + +KVFE +   D+V WN MV+GYS+   F EDA   F          
Sbjct: 282 IDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECF---------- 331

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                    RQMQ  G  PN  + V ++S C+++ +   GK+ H
Sbjct: 332 -------------------------RQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K  +       + + V NALI MY+KC ++  AR +FD +A  N    +   MI  
Sbjct: 367 SLALKSDIP-----SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHN--TVSLNSMIAG 419

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+Q+G   ++L LF  M ++   + P + T    L ACA    +  G   +  +++ ++ 
Sbjct: 420 YAQHGIEMESLHLFQWMLERQ--IAPTSITFISVLSACAHTGRVEEGWN-YFNMMKEKFN 476

Query: 494 MLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKA 547
            + P   +  C+ID+  R+G +  A  +   +      + W SL+     HG   L  KA
Sbjct: 477 -IEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKA 535

Query: 548 HWAFDQMRKEGLAP 561
                Q+     AP
Sbjct: 536 ANQVLQLEPSNAAP 549


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/698 (37%), Positives = 398/698 (57%), Gaps = 44/698 (6%)

Query: 151 SRCGSSVHAVICSSGFD----SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS 206
           S+CGS  +A    + FD     NVF  N L+  YA+   +  ARQ+FDE+ QP   DIVS
Sbjct: 55  SKCGSLHNA---QTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQP---DIVS 108

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           +NT++AAYA  G+    L LFA +  +++   DG +L   + AC       R   C ++ 
Sbjct: 109 YNTLIAAYADRGECRPALRLFAEVR-ELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVV 167

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
                +  +        NA++  YSR G   +A  +F++M  E    + V+W+A+I    
Sbjct: 168 CGYDCYASVN-------NAVLACYSRKGFLNEARRVFREM-GEGGGRDEVSWNAMIVACG 219

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q   G EA+++FR+M   GL+ ++ T+ S+L+    V  L+ G + H   IK      G 
Sbjct: 220 QHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIK-----SGF 274

Query: 387 HPDDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNRDVATWTVMIGSYSQ-NGGANDA 443
           H +   V + LID+Y+KC    V+  +V  +  AP   D+  W  MI  +SQ    + D 
Sbjct: 275 HGNS-HVGSGLIDLYSKCAGGMVECRKVFEEIAAP---DLVLWNTMISGFSQYEDLSEDG 330

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF----V 499
           +  F +M  Q     P+  +  C   AC+ L++   G+Q+HA  +++     IP+    V
Sbjct: 331 IWCFREM--QHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSD----IPYNRVSV 384

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N L+ MYS+ G++  AR VFD + + N+VS  S++ GY  HG+  ++   F+ M ++ +
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDI 444

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
           AP+ +TF+ +L AC H+G V++G KYF+ M + F I   AEHY+C++DLLGRA +L EA 
Sbjct: 445 APNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAE 504

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +IE MP  P  I W  LL  CR H NVEL   AAN  L+LE      Y +LSN+YA+A 
Sbjct: 505 RIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAA 564

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           RW++ A ++ LM+  GVKK+PGCSW++  +    F   D +HP  ++I+  +  +++++K
Sbjct: 565 RWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMK 624

Query: 740 AMGYVPQTSFAL---HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
             GYVP   +AL    +V+ +EK   L  HSEKLA+A+G+++T    PI + KNLRICGD
Sbjct: 625 QAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGD 684

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CH+AI  IS I   EI +RD++RFH FKEG C+C  YW
Sbjct: 685 CHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 143/558 (25%), Positives = 234/558 (41%), Gaps = 93/558 (16%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNLTHVPP----SHLIAAYVSHNAPSPALSLLQRISPS 96
           +LL  +C SL      H      +LT  P     + LI AY  H+    A  +   I P 
Sbjct: 51  TLLYSKCGSL------HNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEI-PQ 103

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           P  +  +N LI           A RLF ++    +  D +T   V+ ACG+         
Sbjct: 104 P-DIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGD--DVGLVRQ 160

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  +   G+D    V NA++A Y+R   L+ AR++F EM + G  D VSWN ++ A  Q
Sbjct: 161 LHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQ 220

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
             +    + LF  M     ++ D  ++ + L+A   +     G Q               
Sbjct: 221 HREGLEAVELFREMVRR-GLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSH 279

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                        G M E +KVFE +   D+V WN M++G+S+   +ED           
Sbjct: 280 VGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQ---YEDL---------- 326

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
                                  + +  FR+MQ  G  P+  + V + S C+++ +  +G
Sbjct: 327 ---------------------SEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVG 365

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           K+ H   IK  +       + + V NAL+ MY+KC +V  AR +FD +   N  + +   
Sbjct: 366 KQVHALAIKSDIPY-----NRVSVNNALVAMYSKCGNVHDARRVFDTMPEHN--MVSLNS 418

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI  Y+Q+G   ++L LF  M Q+D  + PN  T    L AC     +  G Q +  +++
Sbjct: 419 MIAGYAQHGVEVESLRLFELMLQKD--IAPNTITFIAVLSACVHTGKVEEG-QKYFNMMK 475

Query: 490 NQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---L 543
            ++  + P   +  C+ID+  R+G +  A  + + +      + W +L+     HG   L
Sbjct: 476 ERFR-IEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVEL 534

Query: 544 GDKAHWAFDQMRKEGLAP 561
             KA   F Q+     AP
Sbjct: 535 AVKAANEFLQLEPYNAAP 552



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 29/290 (10%)

Query: 103 WNALIRRAVRLR-LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WN +I    +   L ++    F +M   G+HPD+ +F  V  AC  L S   G  VHA+ 
Sbjct: 313 WNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALA 372

Query: 162 CSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             S    N V V NAL+AMY++C  +  AR++FD M +    ++VS N+++A YAQ G  
Sbjct: 373 IKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEH---NMVSLNSMIAGYAQHGVE 429

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-- 278
              L LF  M     +  + ++ +  LSAC            G +EE +K F  MK +  
Sbjct: 430 VESLRLFELMLQK-DIAPNTITFIAVLSACV---------HTGKVEEGQKYFNMMKERFR 479

Query: 279 ---DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              +   ++ M+    R G  ++A  + + M         + W+ ++   A R HG+  L
Sbjct: 480 IEPEAEHYSCMIDLLGRAGKLKEAERIIETM---PFNPGSIEWATLLG--ACRKHGNVEL 534

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            V    +F  LEP       +LS   +  A    +     T+KR++   G
Sbjct: 535 AVKAANEFLQLEPYNAAPYVMLSNMYASAA----RWEEAATVKRLMRERG 580



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 46/330 (13%)

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
           C     + T  +LL  C +   L+ GK  H    K ++      P    + N    +Y+K
Sbjct: 3   CTFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLI------PPSTYLSNHFTLLYSK 56

Query: 404 CKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSY 434
           C S+  A+  FD     N                              D+ ++  +I +Y
Sbjct: 57  CGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAY 116

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +  G    AL LF ++  ++     + FTLS  ++AC     L   RQ+H +V+   Y+ 
Sbjct: 117 ADRGECRPALRLFAEV--RELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDC 172

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAF 551
               V N ++  YSR G ++ AR VF  + +   R+ VSW +++   G H  G +A   F
Sbjct: 173 YAS-VNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELF 231

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M + GL  D  T   +L A +    +  G+++   M K  G    +   + ++DL  +
Sbjct: 232 REMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKS-GFHGNSHVGSGLIDLYSK 290

Query: 612 -ANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            A  + E  ++ E +   P  ++W  +++G
Sbjct: 291 CAGGMVECRKVFEEIAA-PDLVLWNTMISG 319


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 285/777 (36%), Positives = 434/777 (55%), Gaps = 45/777 (5%)

Query: 71   SHLIAAYVSHNAPSPA----LSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM 126
            S L++A+  H     A    LSL Q+      +    N LI   VR    + A ++F+  
Sbjct: 314  SALVSAFARHGLTDEAKDIFLSLKQK------NAVTLNGLIVGLVRQDFSEEAVKIFVGT 367

Query: 127  MRRGWHPDEYTFPFVLKACGELPSS----RCGSSVHAVICSSGF-DSNVFVCNALMAMYA 181
             R     +  T+  +L A  E   S    R G  VH  +  +G  D  + V N L+ MYA
Sbjct: 368  -RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYA 426

Query: 182  RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
            +C  +  A ++F  M      D +SWNTI++A  Q+G+ E  +M ++ M     +     
Sbjct: 427  KCGAIESASKIFQLMEAT---DRISWNTIISALDQNGNCEEAVMHYSLMRQSC-ISPSNF 482

Query: 242  SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
            +L+++LS+CA L   + G+Q         V   + +   VS N +V  Y   G+  D + 
Sbjct: 483  ALISSLSSCAGLKLLTAGQQV----HCDAVKWGLDLDTSVS-NVLVKMYGECGAMSDYWK 537

Query: 302  LFKKMRQENVKLNVVTWSAVIAGYAQRGHG-HEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            +F  M + +     V+W+ ++   A       E + VF  M   GL PN VT ++LL+  
Sbjct: 538  VFNSMAEHDE----VSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAAL 593

Query: 361  ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
            + +  L LGK+ H   +K  +       +D +V NALI  YAK   +     +F  ++ +
Sbjct: 594  SPLSVLELGKQVHAAVMKHGVM------EDNVVDNALISCYAKSGDMGSCEHLFTNMSDR 647

Query: 421  NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
             RD  +W  MI  Y  NG   +A+     M    +++  +  T S  L ACA +AAL  G
Sbjct: 648  -RDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIM--DCCTFSIILNACASVAALERG 704

Query: 481  RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             ++HA+ +R+  E  +  V + L+DMYS+ G +D A  +F+++ QRN  SW S+++GY  
Sbjct: 705  MELHAFGIRSHLESDV-VVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYAR 763

Query: 541  HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
            HGLG KA   F++M +   +PD VTF+ +L ACSH+G+V++GL+YF+ M  + GI  + E
Sbjct: 764  HGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMM-PDHGILPQIE 822

Query: 601  HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH---ANVELGELAANRL 657
            HY+C++DLLGRA ++D+  E I+ MP+EP  +IW  +L  CR     +N++LG  A+  L
Sbjct: 823  HYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVL 882

Query: 658  LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
            LE+E +   +Y L SN +A  G W+D A+ R+ M+    KK  G SWV   +G  TF  G
Sbjct: 883  LEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAG 942

Query: 718  DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
            DR+HP +++IYE L  L+Q I+  GYVP T +AL+D+++E K +LL  HSEKLA+A+ +L
Sbjct: 943  DRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAF-VL 1001

Query: 778  TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            T +   PIRI KNLR+CGDCH A  +IS +I+ +IILRDS RFHHFK+G C+C  YW
Sbjct: 1002 TRSSSGPIRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 155/621 (24%), Positives = 287/621 (46%), Gaps = 38/621 (6%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LLR+         +H ++I + L H     +HL+ +Y      + A  +   + P   +V
Sbjct: 70  LLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEM-PERNAV 128

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRR---GWHPDEYTFPFVLKACGELPSSRCGSSV 157
            W   L+   V   + + AFR+F  M+R    G  P  +TF  +L+AC +    R G +V
Sbjct: 129 SW-TCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAV 187

Query: 158 --HAVICSSGFDSNVFVCNALMAMYARCDTLS--YARQLFDEMFQPGICDIVSWNTIVAA 213
             H ++  + + SN  VCNAL++MY  C       A+++FD      I D+++WN +++ 
Sbjct: 188 QVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFD---GTPIRDLITWNALMSV 244

Query: 214 YAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
           YA+ GD      LF  M  GD ++Q       +   +  +  + S G    + +    V 
Sbjct: 245 YAKKGDVASTFTLFKDMQRGDSRIQLRPTE--HTFGSLITAASLSSGSSAVLDQVLVWVL 302

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           +     D+   +A+V+ ++R G  ++A  +F  ++Q+    N VT + +I G  ++    
Sbjct: 303 KSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQK----NAVTLNGLIVGLVRQDFSE 358

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHP 388
           EA+ +F   +   ++ N  T V LLS  A    S   L +G+  H + ++  L+      
Sbjct: 359 EAVKIFVGTRNT-VDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLT-----D 412

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
             + V N L++MYAKC +++ A  +F  +   +R   +W  +I +  QNG   +A+  + 
Sbjct: 413 LKIAVSNGLVNMYAKCGAIESASKIFQLMEATDR--ISWNTIISALDQNGNCEEAVMHYS 470

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
            M Q    + P+ F L  +L +CA L  L  G+Q+H   ++   + L   V+N L+ MY 
Sbjct: 471 LMRQ--SCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLD-LDTSVSNVLVKMYG 527

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG-DKAHWAFDQMRKEGLAPDGVTFL 567
             G +     VF+++ + + VSW ++M           +    F+ M + GL P+ VTF+
Sbjct: 528 ECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFI 587

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            LL A S   +++ G +   ++ K  G+         ++    ++  +     L   M  
Sbjct: 588 NLLAALSPLSVLELGKQVHAAVMKH-GVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSD 646

Query: 628 EPTPIIWVALLNGCRIHANVE 648
               I W ++++G   + N++
Sbjct: 647 RRDAISWNSMISGYIYNGNLQ 667


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 355/569 (62%), Gaps = 24/569 (4%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL-----------NVVTWSAVIAGYAQ 327
           D+   NA++  Y++  +    F +F K  +  +             +VV+W+ VIAG+AQ
Sbjct: 144 DLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQ 203

Query: 328 RGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
            G   EALD+ R+M   G L+P+  TL S+L   A    +  GKE H Y ++     DG 
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN--GFDG- 260

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
              D+ + ++LIDMYAKC  ++ +   F  I P+ +D  +W  +I    QNG  +  L  
Sbjct: 261 ---DVFIGSSLIDMYAKCNRLECSLRAF-YILPR-KDAISWNSIIAGCVQNGEFDRGLGF 315

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F +M +++  VKP A + S  + ACA L AL  GRQ+H  ++R  ++    F+A+ L+DM
Sbjct: 316 FRRMLKEN--VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD-NEFIASSLVDM 372

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y++ G+I  AR VFD + +R++V+WT+++ G  MHG    A   F+ M ++G+ P  V F
Sbjct: 373 YAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAF 432

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           + +L ACSH+G+VD+G +YF+SM ++FGI+   EHYA + DLLGRA RL+EA + I  M 
Sbjct: 433 MAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMR 492

Query: 627 -MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
            ++PT  +W  LL  CR H +VEL E   ++LL ++SE  G+Y L+SNIY+ A RWKD A
Sbjct: 493 GVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAA 552

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           R+R  M+  G+KK P CSW++      TF  GD++HP   KI + L  L+++++  GYV 
Sbjct: 553 RLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVI 612

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T+  LHDVD+E K +LL  HSE+LA+AYGI++T  GT IR+ KN+R+C DCH+AI FI+
Sbjct: 613 DTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFIT 672

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I+  EI +RD++RFHHFK GSC+C  YW
Sbjct: 673 KIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 147/625 (23%), Positives = 257/625 (41%), Gaps = 141/625 (22%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+++I+      L   +F  F  M      P+ + FP +LKA   L   +   S+HA   
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C-----------DIVSWNTI 210
             G DS++++ NAL+  YA+         +F +  + GI C           D+VSWNT+
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------- 261
           +A +AQ+G     L +   M  + K++ D  +L + L   A     ++GK+         
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNG 257

Query: 262 -----------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
                            C  +E + + F  +  KD +SWN+++ G  + G F+     F+
Sbjct: 258 FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR 317

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M +ENVK   V++S+VI                                     CA + 
Sbjct: 318 RMLKENVKPMAVSFSSVIP-----------------------------------ACAHLT 342

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           AL LG++ H   ++  L  D    D+  + ++L+DMYAKC ++ +AR +FD I    RD+
Sbjct: 343 ALSLGRQLHGCIVR--LGFD----DNEFIASSLVDMYAKCGNIKMARYVFDRI--DKRDM 394

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             WT +I   + +G A DA++LF  M +    V+P        L AC+    +  G +  
Sbjct: 395 VAWTAIIMGCAMHGHALDAVSLFENMLEDG--VRPCYVAFMAVLTACSHAGLVDEGWRYF 452

Query: 485 AYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
             + R+    + P + +   + D+  R+G ++ A     N++                  
Sbjct: 453 NSMERDF--GIAPGLEHYAAVADLLGRAGRLEEAYDFISNMR------------------ 492

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH- 601
                          G+ P G  + +LL AC     V+   K  D +     +S  +E+ 
Sbjct: 493 ---------------GVQPTGSVWSILLAACRAHKSVELAEKVLDKL-----LSVDSENM 532

Query: 602 --YACIVDLLGRANRLDEAVEL---IEGMPMEPTPII-WVALLN-------GCRIHANVE 648
             Y  + ++   A R  +A  L   +    ++ TP   W+ + N       G + H   +
Sbjct: 533 GAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYD 592

Query: 649 LGELAANRLLELESEKDGSYTLLSN 673
               A + LLE + EK+G Y + +N
Sbjct: 593 KINKALDVLLE-QMEKEG-YVIDTN 615



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 199/457 (43%), Gaps = 62/457 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V  WN +I    +  +   A  +  +M + G   PD +T   +L    E      G  +H
Sbjct: 191 VVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIH 250

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                +GFD +VF+ ++L+ MYA+C+ L  + + F  + +    D +SWN+I+A   Q+G
Sbjct: 251 GYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK---DAISWNSIIAGCVQNG 307

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
           + + GL  F RM  +  V+   VS  + + ACA L   S G+Q                 
Sbjct: 308 EFDRGLGFFRRMLKE-NVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIA 366

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG ++ A+ VF+R+  +D+V+W A++ G +  G   DA +LF+ M ++ V+
Sbjct: 367 SSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVR 426

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALL--LG 369
              V + AV+   +  G   E    F  M+   G+ P        L   A+V  LL   G
Sbjct: 427 PCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPG-------LEHYAAVADLLGRAG 479

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA-IAPKNRDVATWT 428
           +    Y    + ++ G  P    V + L+      KSV++A  + D  ++  + ++  + 
Sbjct: 480 RLEEAYDF--ISNMRGVQPTG-SVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYV 536

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           +M   YS      DA  L   M ++     P          AC   + +  G Q+H ++ 
Sbjct: 537 LMSNIYSAAQRWKDAARLRIHMRKKGLKKTP----------AC---SWIEVGNQVHTFMA 583

Query: 489 RNQ---YEMLIPFVANCLIDMYSRSGD-IDTARVVFD 521
            ++   Y   I    + L++   + G  IDT +V+ D
Sbjct: 584 GDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHD 620


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 270/708 (38%), Positives = 395/708 (55%), Gaps = 76/708 (10%)

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           ++ Y R   +  AR++FD    P    I SWN +V+AY +S      L+LF +M      
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRT-IASWNAMVSAYFESHKPRDALLLFDQMP----- 79

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           Q + VS    +S            + GM+ +A+KVF+ M  ++VVSW +MV GY + G  
Sbjct: 80  QRNTVSFNGMISGYV---------KNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMV 130

Query: 297 EDAFALFKKMRQENV---------------------------KLNVVTWSAVIAGYAQRG 329
           E+A  LF +M + NV                           + +VV  + +I GY Q G
Sbjct: 131 EEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVG 190

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG---------------------ALLL 368
              EA ++F +M+      NV T  +++SG A  G                     A+L+
Sbjct: 191 RLDEARELFDEMKV----RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLM 246

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVI-NALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           G  T    +K    +  + P   +V  N +I  +     +  AR+MF+ +  K RD  TW
Sbjct: 247 GY-TQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGM--KERDEGTW 303

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             MI  + + G   +AL LF +M  Q + V  N  ++   L  CA LA+L  GRQ+HA +
Sbjct: 304 NAMIKVFERKGLDLEALGLFARM--QREGVALNFPSMISVLSVCASLASLDHGRQVHARL 361

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +R++++  + +VA+ LI MY + GD+  A+ +F+    ++VV W S++TGY  HGLG++A
Sbjct: 362 VRSEFDQDL-YVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEA 420

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F  M   G+ PD VTF+ +L ACS+SG V +G + F++M   + +    EHYAC+VD
Sbjct: 421 LNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVD 480

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LLGRA R+DEA+EL+E MPMEP  I+W ALL  CR H  ++L E+A  +L +LE +  G 
Sbjct: 481 LLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGP 540

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD-RTHPQSQK 726
           Y LLS++YA  GRW+DV  +R  +    V K PGCSW++ ++    F  GD ++HP+   
Sbjct: 541 YVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHM 599

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           I ++L  L   ++  GY P  SF LHDVD+EEK   L  HSE+LA+AYG+L    G PIR
Sbjct: 600 ITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIR 659

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + KNLR+CGDCHSAI  I+ +   EIILRD+NRFHHFK+GSC+CK +W
Sbjct: 660 VMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 235/504 (46%), Gaps = 54/504 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I+ YV +   + A  +   + P   +V  W +++R  V+  + + A +LF +M RR   
Sbjct: 89  MISGYVKNGMVADARKVFD-VMPER-NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRN-- 144

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD----SNVFVCNALMAMYARCDTLSY 188
                  + +   G L  SR   +         FD     +V V   ++  Y +   L  
Sbjct: 145 ----VVSWTVMIGGLLKESRIDDA------KKLFDMIPEKDVVVVTNMIGGYCQVGRLDE 194

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR+LFDEM    + ++ +W T+V+ YA++G  +    LF  M              N +S
Sbjct: 195 ARELFDEM---KVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER-----------NEVS 240

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
             A L  ++   Q G M+EA ++FE M VK +V+ N M+  +   G    A  +F+ M++
Sbjct: 241 WTAMLMGYT---QSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKE 297

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +      TW+A+I  + ++G   EAL +F +MQ  G+  N  +++S+LS CAS+ +L  
Sbjct: 298 RDEG----TWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDH 353

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G++ H   ++           DL V + LI MY KC  +  A+ +F+    K  DV  W 
Sbjct: 354 GRQVHARLVR------SEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK--DVVMWN 405

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-HAYV 487
            MI  YSQ+G   +AL +F  M      V+P+  T    L AC+    ++ G +I  A  
Sbjct: 406 SMITGYSQHGLGEEALNVFHDMCSSG--VQPDEVTFIGVLSACSYSGKVKEGFEIFEAMK 463

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDK 546
              Q E  I   A C++D+  R+G +D A  + + +  + + + W +L+     H   D 
Sbjct: 464 CTYQVEPGIEHYA-CMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDL 522

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL 570
           A  A +++ K  L P      VLL
Sbjct: 523 AEVAVEKLAK--LEPKNAGPYVLL 544



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 170/369 (46%), Gaps = 56/369 (15%)

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--KDVVSWNAMVTGYSRIGSFEDAF 300
           +V A S C++    SR  + G +  A+KVF+   +  + + SWNAMV+ Y       DA 
Sbjct: 13  MVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDAL 72

Query: 301 ALFKKMRQENV---------------------------KLNVVTWSAVIAGYAQRGHGHE 333
            LF +M Q N                            + NVV+W++++ GY Q G   E
Sbjct: 73  LLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEE 132

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A  +F +M       NVV+   ++ G        L KE+     K++   D     D++V
Sbjct: 133 AEKLFWEMP----RRNVVSWTVMIGG--------LLKESRIDDAKKLF--DMIPEKDVVV 178

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           +  +I  Y +   +D AR +FD +  K R+V TWT M+  Y++NG  + A  LF  M ++
Sbjct: 179 VTNMIGGYCQVGRLDEARELFDEM--KVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER 236

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
                 N  + +  LM        + GR   A+ L     +      N +I  +  +G++
Sbjct: 237 ------NEVSWTAMLMGYT-----QSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEM 285

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             AR++F+ +K+R+  +W +++  +   GL  +A   F +M++EG+A +  + + +L  C
Sbjct: 286 HRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVC 345

Query: 574 SHSGMVDQG 582
           +    +D G
Sbjct: 346 ASLASLDHG 354



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 116/261 (44%), Gaps = 23/261 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I+   R  L   A  LF +M R G   +  +   VL  C  L S   G  VHA + 
Sbjct: 303 WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLV 362

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S FD +++V + L+ MY +C  L  A+ +F+        D+V WN+++  Y+Q G  E 
Sbjct: 363 RSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFL---FKDVVMWNSMITGYSQHGLGEE 419

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M     VQ D V+ +  LSAC+           G ++E  ++FE MK    V 
Sbjct: 420 ALNVFHDMCSS-GVQPDEVTFIGVLSACS---------YSGKVKEGFEIFEAMKCTYQVE 469

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  MV    R G  ++A  L +KM  E    + + W A++   A R H    L  
Sbjct: 470 PGIEHYACMVDLLGRAGRVDEAMELVEKMPMEP---DAIVWGALLG--ACRNHMKLDLAE 524

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +   LEP       LLS
Sbjct: 525 VAVEKLAKLEPKNAGPYVLLS 545


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/686 (36%), Positives = 390/686 (56%), Gaps = 69/686 (10%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           ARQLFD + QP   D  + +T+++A    G +   + +++ +  +  ++ D    + A  
Sbjct: 117 ARQLFDNIPQP---DPTTCSTLISALTTHGLSNEAIKIYSSLQ-ERGIKPDMPVFLAAAK 172

Query: 249 ACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           ACA  G   R K+       CG+M             DV   NA++  Y +    E A  
Sbjct: 173 ACAVSGDALRVKEVHDDATRCGVMS------------DVFVGNALIHAYGKCKCVEGARR 220

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  +    V  +VV+W+++ + Y + G   + +DVFR+M + G++PN +T+ S+L  CA
Sbjct: 221 VFDDL----VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACA 276

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP-- 419
            +  L  GKE H + ++  + V+      L V +AL+ +YAKC SV  AR++FD +    
Sbjct: 277 ELKDLKSGKEIHGFAVRHGMVVN------LFVCSALVSLYAKCLSVREARMVFDLMPHRD 330

Query: 420 ------------KNR-------------------DVATWTVMIGSYSQNGGANDALALFP 448
                       KN+                   D ATW  +IG   +NG + +A+ +F 
Sbjct: 331 VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR 390

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M  Q    KPN  T+S  L AC+    LR G++IH YV R  +++        L+ MY+
Sbjct: 391 KM--QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFR-HWKVGDLTSTTALLYMYA 447

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + GD++ +R VFD +++++VV+W +++    MHG G +A + FD+M    + P+ VTF  
Sbjct: 448 KCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTG 507

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L  CSHS +V++G++ F+SM ++  +   A HY+C+VD+  RA RL+EA + I+GMPME
Sbjct: 508 VLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME 567

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           PT   W ALL  CR++ NVEL +++A +L E+E    G+Y  L NI   A  W + +++R
Sbjct: 568 PTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVR 627

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
            LMK  G+ K PGCSW+Q      TF VGD+++ +S KIY  L  LV+++K  GY P T 
Sbjct: 628 ILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTD 687

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
           + L D+D EEK + L  HSEKLA+A+GIL     + IR+ KNLRICGDCH+AI ++S ++
Sbjct: 688 YVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVV 747

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
              I++RDS RFHHFK G+C+CK  W
Sbjct: 748 GVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/527 (29%), Positives = 254/527 (48%), Gaps = 59/527 (11%)

Query: 24  TNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHL----IAAYVS 79
            N+ +F+ T+ P +K   L      +  +  L  + ++  +L    PSHL    I   ++
Sbjct: 56  NNLIVFAKTSFPVLKRFEL-----SNGAEFLLSTEAMVPPSLPTNIPSHLGLRLIRVALN 110

Query: 80  HNAPSPALSLLQRI-SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTF 138
               + A  L   I  P P +    + LI       L + A +++  +  RG  PD   F
Sbjct: 111 VGDFNRARQLFDNIPQPDPTTC---STLISALTTHGLSNEAIKIYSSLQERGIKPDMPVF 167

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
               KAC     +     VH      G  S+VFV NAL+  Y +C  +  AR++FD++  
Sbjct: 168 LAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLV- 226

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
             + D+VSW ++ + Y + G    G+ +F  M G   V+ + +++ + L ACA L     
Sbjct: 227 --VRDVVSWTSLSSCYVKCGFPRKGMDVFREM-GWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 259 GKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           GK+                          C  + EA+ VF+ M  +DVVSWN ++T Y +
Sbjct: 284 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
              +E  F+LF KM ++ V+ +  TW+AVI G  + G   EA+++FR+MQ  G +PN +T
Sbjct: 344 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 403

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           + S+L  C+    L +GKE HCY  +           DL    AL+ MYAKC  ++++R 
Sbjct: 404 ISSILPACSFSENLRMGKEIHCYVFRH------WKVGDLTSTTALLYMYAKCGDLNLSRN 457

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD +  + +DV  W  MI + + +G   +AL LF +M      V+PN+ T +  L  C+
Sbjct: 458 VFDMM--RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR--VQPNSVTFTGVLSGCS 513

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN---CLIDMYSRSGDIDTA 516
               +  G QI   + R+    L+   AN   C++D+YSR+G ++ A
Sbjct: 514 HSRLVEEGVQIFNSMGRDH---LVEPDANHYSCVVDIYSRAGRLNEA 557



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LI +    GD + AR +FDN+ Q +  + ++L++    HGL ++A   +  +++ G+ PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 563 GVTFLVLLYACSHSG 577
              FL    AC+ SG
Sbjct: 164 MPVFLAAAKACAVSG 178


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 399/713 (55%), Gaps = 62/713 (8%)

Query: 157 VHAVICSSGFD-SNVFVCNALMAMYARCDTLSYARQLFDEMFQPG--ICDIVSWNTIVAA 213
           VHA I  S  D S   +   +++  A   +L YA  +F+ + +P   +C     N  +  
Sbjct: 42  VHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLC-----NRFLRE 96

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
            ++S + E  L+++ RM    + QG   D  S    L A + + +   G +   +  AK 
Sbjct: 97  LSRSEEPEKTLLVYERM----RTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLA-AKL 151

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
            F+     D      +V  Y+  G   +A  +F KM   +V    VTWS +I GY Q G 
Sbjct: 152 GFD----SDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDV----VTWSIMIDGYCQSGL 203

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
            ++AL +F +M+   +EP+ + L ++LS C   G L  GK  H + ++  + VD      
Sbjct: 204 FNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPH---- 259

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKN----------------------------- 421
             + +AL+ MYA C S+D+A  +F+ + PKN                             
Sbjct: 260 --LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVK 317

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           +D+  W+ MI  Y+++    +AL LF +M  Q   +KP+  T+   + ACA L AL   +
Sbjct: 318 KDLVCWSAMISGYAESDSPQEALNLFNEM--QSLGIKPDQVTMLSVITACAHLGALDQAK 375

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            IH +V +N +   +P + N LI+MY++ G ++ AR +FD + ++NV+SWT +++ + MH
Sbjct: 376 WIHLFVDKNGFGGALP-INNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMH 434

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G    A   F QM  E + P+G+TF+ +LYACSH+G+V++G K F SM  E  I+ +  H
Sbjct: 435 GDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVH 494

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           Y C+VDL GRAN L EA+EL+E MP+ P  IIW +L+  CR+H  +ELGE AA RLLEL+
Sbjct: 495 YGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELD 554

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            + DG++  LSNIYA A RW+DV ++R LMKH G+ K  GCS  +       F V DR+H
Sbjct: 555 PDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSH 614

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
             + +IYE L  +V ++K +GY P T   L D+++EEK +++  HSEKLAL YG++    
Sbjct: 615 KHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGT 674

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G+ IRI KNLR+C DCH+ I   S +   EI++RD  RFHH+K+G C+CK YW
Sbjct: 675 GSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 193/590 (32%), Positives = 301/590 (51%), Gaps = 60/590 (10%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP----ALSLLQRISPSPFS 99
           L    SLT +  +H QI+   L     S L+   +S  A S     ALS+   I P P  
Sbjct: 30  LSSATSLTHLKQVHAQILRSKLDR-STSLLVKLVISSCALSSSLDYALSVFNLI-PKP-E 86

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
               N  +R   R   P+    ++ +M  +G   D ++FP +LKA   + S   G  +H 
Sbjct: 87  THLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHG 146

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +    GFDS+ FV   L+ MYA C  ++ AR +FD+MF     D+V+W+ ++  Y QSG 
Sbjct: 147 LAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHR---DVVTWSIMIDGYCQSGL 203

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------- 260
               L+LF  M  +  V+ D + L   LSAC   G  S GK                   
Sbjct: 204 FNDALLLFEEMK-NYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG M+ A  +FE+M  K++V+  AMVTGYS++G  E+A ++F +M    VK 
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM----VKK 318

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           ++V WSA+I+GYA+     EAL++F +MQ  G++P+ VT++S+++ CA +GAL   K  H
Sbjct: 319 DLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIH 378

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            +  K      G+ P    + NALI+MYAKC S++ AR +FD +  KN  V +WT MI +
Sbjct: 379 LFVDKN--GFGGALP----INNALIEMYAKCGSLERARRIFDKMPRKN--VISWTCMISA 430

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           ++ +G A  AL  F QM  +D+ ++PN  T    L AC+    +  GR+I  Y + N++ 
Sbjct: 431 FAMHGDAGSALRFFHQM--EDENIEPNGITFVGVLYACSHAGLVEEGRKIF-YSMINEHN 487

Query: 494 MLIPFVA-NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           +    V   C++D++ R+  +  A  + + +    NV+ W SLM    +HG  +   +A 
Sbjct: 488 ITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAA 547

Query: 552 DQMRKEGLAPDGV-TFLVLLYACSHS----GMVDQGLKYFDSMSKEFGIS 596
            ++ +     DG   FL  +YA +      G V + +K+   +SKE G S
Sbjct: 548 KRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKH-KGISKERGCS 596



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 163/367 (44%), Gaps = 59/367 (16%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCK---SLTQVYLIHQQIIVQNLTHVP--PSHLIAA 76
           LF  +K ++V   P   + S +L  C    +L+   +IH  I+  N+   P   S L+  
Sbjct: 210 LFEEMKNYNVE--PDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTM 267

Query: 77  YVSHNAPSPALSLLQRISPSPF--------------------SVF---------WWNALI 107
           Y S  +   AL+L ++++P                       SVF          W+A+I
Sbjct: 268 YASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMI 327

Query: 108 RRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD 167
                   P  A  LF +M   G  PD+ T   V+ AC  L +      +H  +  +GF 
Sbjct: 328 SGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFG 387

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
             + + NAL+ MYA+C +L  AR++FD+M +    +++SW  +++A+A  GDA   L  F
Sbjct: 388 GALPINNALIEMYAKCGSLERARRIFDKMPRK---NVISWTCMISAFAMHGDAGSALRFF 444

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF-----ERMKVKDVVS 282
            +M  D  ++ +G++ V  L AC+           G++EE +K+F     E       V 
Sbjct: 445 HQME-DENIEPNGITFVGVLYACS---------HAGLVEEGRKIFYSMINEHNITPKHVH 494

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +  MV  + R     +A  L + M    +  NV+ W +++A  A R HG   L  F   +
Sbjct: 495 YGCMVDLFGRANLLREALELVEAM---PLAPNVIIWGSLMA--ACRVHGEIELGEFAAKR 549

Query: 343 FCGLEPN 349
              L+P+
Sbjct: 550 LLELDPD 556



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           TL  AL +   L  L+   Q+HA +LR++ +     +   +I   + S  +D A  VF+ 
Sbjct: 25  TLFSALSSATSLTHLK---QVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNL 81

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +         +         +K    +++MR +GLA D  +F  LL A S    + +G
Sbjct: 82  IPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEG 141

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           L+    ++ + G  +       +V +     R+ EA  + + M      + W  +++G
Sbjct: 142 LE-IHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKM-FHRDVVTWSIMIDG 197


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/738 (34%), Positives = 397/738 (53%), Gaps = 70/738 (9%)

Query: 152 RCGSSVHAVICSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------- 202
           R   +VH +I  +   +   F+ N L+  YA+   L+ AR++FDEM  P +         
Sbjct: 29  RVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSA 88

Query: 203 --------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
                               D VS+N ++  ++ +G     + L+  +  +  V+   ++
Sbjct: 89  LAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRIT 148

Query: 243 LVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMK 276
           L   +   ++L   + G                           + G++ +A++VF+ M+
Sbjct: 149 LSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEME 208

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            K VV +N ++TG  R    EDA  LF+ M    V  + +TW+ ++ G  Q G   EALD
Sbjct: 209 AKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           VFR+M+  G+  +  T  S+L+ C ++ A   GK+ H Y I R       + D++ V +A
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAY-ITRTW-----YEDNVFVGSA 318

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY+KC+S+ +A  +F  +  +N  + +WT MI  Y QN  + +A+  F +M Q D  
Sbjct: 319 LVDMYSKCRSIRLAEAVFRRMTCRN--IISWTAMIVGYGQNACSEEAVRAFSEM-QMDG- 374

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP+ FTL   + +CA LA+L  G Q H   L +     I  V+N L+ +Y + G I+ A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT-VSNALVTLYGKCGSIEDA 433

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +FD +   + VSWT+L+TGY   G   +    F++M   GL PDGVTF+ +L ACS +
Sbjct: 434 HRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRA 493

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++G  YFDSM K+  I    +HY C++DL  R+ R  EA E I+ MP  P    W  
Sbjct: 494 GLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ CR+  N+E+G+ AA  LLE + +   SY LL +++A  G+W +VA +R  M+   V
Sbjct: 554 LLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PGCSW++ K     F   D++HP S +IYE L  L  ++   GY P  S  LHDV D
Sbjct: 614 KKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVAD 673

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
            +K  ++  HSEKLA+A+G++      PIRI KNLR+C DCH+A  FIS I   +I++RD
Sbjct: 674 ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRD 733

Query: 817 SNRFHHFKEGSCTCKGYW 834
           + RFH F +G+C+C  +W
Sbjct: 734 AVRFHKFSDGTCSCGDFW 751



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 141/560 (25%), Positives = 235/560 (41%), Gaps = 87/560 (15%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLP 116
           +I++     PP+ L+   ++  A S  L+  +R+    P P ++F  NAL+      RL 
Sbjct: 37  LILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDP-NLFTRNALLSALAHSRLV 95

Query: 117 DNAFRLFLQMMRR--------------------------------GWHPDEYTFPFVLKA 144
            +  RLF  M  R                                   P   T   ++  
Sbjct: 96  PDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMV 155

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-- 202
              L     G SVH  +   GF +  FV + L+ MYA+   +  AR++F EM    +   
Sbjct: 156 ASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 203 --------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
                                     D ++W T+V    Q+G     L +F RM  +  V
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE-GV 274

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGS 295
             D  +  + L+AC +L     GKQ            R   +D V   +A+V  YS+  S
Sbjct: 275 GIDQYTFGSILTACGALAASEEGKQI------HAYITRTWYEDNVFVGSALVDMYSKCRS 328

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A A+F++M   N+    ++W+A+I GY Q     EA+  F +MQ  G++P+  TL S
Sbjct: 329 IRLAEAVFRRMTCRNI----ISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           ++S CA++ +L  G + HC      L++       + V NAL+ +Y KC S++ A  +FD
Sbjct: 385 VISSCANLASLEEGAQFHC------LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFD 438

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            ++    D  +WT ++  Y+Q G A + + LF +M      +KP+  T    L AC+R  
Sbjct: 439 EMS--FHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNG--LKPDGVTFIGVLSACSRAG 494

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSL 534
            +  G      + ++   + I     C+ID+YSRSG    A      +    +   W +L
Sbjct: 495 LVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 535 MTGYGMHGLGDKAHWAFDQM 554
           ++   + G  +   WA + +
Sbjct: 555 LSSCRLRGNMEIGKWAAENL 574



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 201/477 (42%), Gaps = 76/477 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++    +  L   A  +F +M   G   D+YTF  +L ACG L +S  G  +HA I 
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYIT 305

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
            + ++ NVFV +AL+ MY++C ++  A  +F  M     C +I+SW  ++  Y Q+  +E
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM----TCRNIISWTAMIVGYGQNACSE 361

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             +  F+ M  D  ++ D  +L + +S+CA+L +   G Q   +     +   + V    
Sbjct: 362 EAVRAFSEMQMD-GIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS--- 417

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA+VT Y + GS EDA  LF +M       + V+W+A++ GYAQ G   E +D+F +M
Sbjct: 418 --NALVTLYGKCGSIEDAHRLFDEMSFH----DQVSWTALVTGYAQFGKAKETIDLFEKM 471

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              GL+P+ VT + +LS C+  G +  G                                
Sbjct: 472 LVNGLKPDGVTFIGVLSACSRAGLVEKG-------------------------------- 499

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
             C   D  +   D +   +     +T MI  YS++G   +A     QM        P+A
Sbjct: 500 --CDYFDSMQKDHDIVPIDDH----YTCMIDLYSRSGRFKEAEEFIKQMPHS-----PDA 548

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F  +  L +C     +  G+     +L    +    +V  C   M++  G       +  
Sbjct: 549 FGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC--SMHAAKGQWTEVAHLRR 606

Query: 522 NLKQRNV-----VSWTSLMTGYGMHGLGDKAH-----------WAFDQMRKEGLAPD 562
            ++ R V      SW        +    D++H           W   +M +EG  PD
Sbjct: 607 GMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPD 663


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 277/838 (33%), Positives = 434/838 (51%), Gaps = 53/838 (6%)

Query: 32  TTTPC-IKITSL--LLRQCKSLTQVYL---IHQQII-VQNLTHVPPSHLIAAYVSHNAPS 84
           T T C I++  L  LLR     T + L   +H  I+ +   TH+  + +IAAY+      
Sbjct: 96  TNTDCLIEVDDLFNLLRLSVKYTDIDLARALHASILKLGEDTHLGNA-VIAAYIKLGLVV 154

Query: 85  PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
            A  +   +S +P  V  ++ALI    +L     A +LF +M   G  P+EY+F  +L A
Sbjct: 155 DAYEVFMGMS-TP-DVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTA 212

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C        G  VHA+    G+   VFV NAL+ +Y +C  L +A  LFDEM Q    DI
Sbjct: 213 CIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQR---DI 269

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--- 261
            SWNT++++  +    E  L LF  +  +   + D  +L   L+ACA      +G++   
Sbjct: 270 ASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHA 329

Query: 262 -----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
                                  CG +     +FERM V+D+++W  M+T Y   G  + 
Sbjct: 330 YAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDL 389

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  +F KM ++N     V+++A++ G+ +   G +AL++F +M   G E    TL  +++
Sbjct: 390 AVDMFNKMPEKNS----VSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVIN 445

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C  +  L + ++ H + IK     +        +  ALIDM +KC  +D A  MF +++
Sbjct: 446 ACGLLLKLEISRQIHGFIIKFGFRSNAC------IEAALIDMCSKCGRMDDADRMFQSLS 499

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
               +    T MI  Y++NG   +A+ LF +  Q +  +  +    +  L  C  L    
Sbjct: 500 TDGGNSIIQTSMICGYARNGLPEEAICLFYRC-QSEGTMVLDEVAFTSILGVCGTLGFHE 558

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            G+QIH   L+  +   +  V N +I MYS+  +ID A   F+ +   +VVSW  L+ G 
Sbjct: 559 VGKQIHCQALKTGFHAELG-VGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQ 617

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL--YACSHSGMVDQGLKYFDSMSKEFGIS 596
            +H  GD+A   +  M K G+ PD +TF++++  Y  + S ++D+    F SM     + 
Sbjct: 618 LLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLE 677

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
             +EHYA +V +LG    L+EA ELI  MP +P   +W ALL+GCR+HAN  +G+  A  
Sbjct: 678 PTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKH 737

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           ++ +E     +Y L+SN+YA +GRW     +R  M+  G++K P  SWV  K+   TF+ 
Sbjct: 738 IIGMEPRDPSTYVLVSNLYAASGRWHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYA 797

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
            D++HPQS  IY  L  L+ +    GY P  SF L +V++++K D LF HS KLA  YG+
Sbjct: 798 RDKSHPQSNDIYSGLDILILKCLKAGYEPDMSFVLQEVEEQQKKDFLFYHSAKLAATYGL 857

Query: 777 LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           L T PG PIR+ KN+ +C DCH+ + + +++   EII RD++ FH F  G C+CKGYW
Sbjct: 858 LKTRPGEPIRVVKNILLCRDCHTFLKYATVVTQREIIFRDASGFHCFSNGQCSCKGYW 915


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 341/553 (61%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  +S + + ++A  +F K R    K  +  W+A+    A  G G++ L+++ +M   G
Sbjct: 110 LINMFSELDTVDNARKVFDKTR----KRTIYVWNALFRALALAGRGNDVLELYPRMNMMG 165

Query: 346 LEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  +  T   LL  C +    V  L  GKE H + ++      G+H   + V+  L+DMY
Sbjct: 166 VSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGY---GAH---VHVMTTLMDMY 219

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           A+   V  A  +FD +  KN  V +W+ MI  Y++NG   +AL LF +M        PN+
Sbjct: 220 ARFGCVSYASAVFDEMPVKN--VVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA  AAL  G+ IHAY+LR   + ++P V + LI MY+R G +++ +++FD
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILP-VISALITMYARCGKLESGQLIFD 336

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            + +++VV W SL++ YG+HG G KA   F++M   G +P  ++F+ +L ACSH+G+V++
Sbjct: 337 RMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEE 396

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G K F+SM KE GI    EHYAC+VDLLGRANRLDEA ++IE + +EP P +W +LL  C
Sbjct: 397 GKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGAC 456

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH +VEL E A+ RL +LE    G+Y LL++IYA A  W +V R++ L+    ++K PG
Sbjct: 457 RIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPG 516

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW++ +    +F   D  +PQ ++++ +L  L   +K  GY PQT   L+D+D EEK  
Sbjct: 517 RSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKER 576

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLA+A+G++ T+ G  IRITKNLR+C DCHS   FIS   + EI++RD NRFH
Sbjct: 577 IVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFH 636

Query: 822 HFKEGSCTCKGYW 834
           HFK+G C+C  YW
Sbjct: 637 HFKDGVCSCGDYW 649



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 133/534 (24%), Positives = 226/534 (42%), Gaps = 87/534 (16%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSV---FWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           L   Y +H  PS       ++S S FS       N+     ++        +  L ++  
Sbjct: 4   LRTPYSTHYPPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLSH 63

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
             +P + T   ++ +     S      VH ++   GFD + F+   L+ M++  DT+  A
Sbjct: 64  ESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNA 123

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R++FD+  +     I  WN +  A A +G     L L+ RM   + V  D  +    L A
Sbjct: 124 RKVFDKTRKR---TIYVWNALFRALALAGRGNDVLELYPRMNM-MGVSSDRFTYTYLLKA 179

Query: 250 CAS----LGTWSRGKQC--------------------------GMMEEAKKVFERMKVKD 279
           C +    +    +GK+                           G +  A  VF+ M VK+
Sbjct: 180 CVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKN 239

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VVSW+AM+  Y++ G   +A  LF++M      LN                 H+++    
Sbjct: 240 VVSWSAMIACYAKNGKPYEALELFREM-----MLNT----------------HDSV---- 274

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                   PN VT+VS+L  CA+  AL  GK  H Y ++R L         L VI+ALI 
Sbjct: 275 --------PNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLD------SILPVISALIT 320

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYA+C  ++  +++FD +  K  DV  W  +I SY  +G    A+ +F +M   D    P
Sbjct: 321 MYARCGKLESGQLIFDRMHKK--DVVLWNSLISSYGLHGYGRKAIKIFEEMI--DHGFSP 376

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTAR 517
           +  +    L AC+    +  G+++   +++     + P V +  C++D+  R+  +D A 
Sbjct: 377 SHISFISVLGACSHTGLVEEGKKLFESMVKEH--GIQPSVEHYACMVDLLGRANRLDEAA 434

Query: 518 VVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            + ++L+ +     W SL+    +H   + A  A  ++ K  L P      VLL
Sbjct: 435 KIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFK--LEPTNAGNYVLL 486



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 22/239 (9%)

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           + V+   F+   P N   +    +I S  + G    AL L            P   T   
Sbjct: 24  LSVSSFSFNPSTPPN---SNNNHLIQSLCKQGNLKQALYLLSHE------SNPTQQTCEL 74

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            +++ AR  +L     +H  ++   ++   PF+A  LI+M+S    +D AR VFD  ++R
Sbjct: 75  LILSAARRNSLSDALDVHQLLVDGGFDQ-DPFLATKLINMFSELDTVDNARKVFDKTRKR 133

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
            +  W +L     + G G+     + +M   G++ D  T+  LL AC    +  + L  F
Sbjct: 134 TIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKAC----VASECLVSF 189

Query: 587 DSMSKEF-------GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
               KE        G  A       ++D+  R   +  A  + + MP++   + W A++
Sbjct: 190 LQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNV-VSWSAMI 247


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/675 (38%), Positives = 390/675 (57%), Gaps = 32/675 (4%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           D NVF  N L++ YA+   +  A QLFDEM QP   D VS+NT++AAYA+ GD +    L
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQP---DSVSYNTLIAAYARRGDTQPAFQL 127

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNA 285
           F  M  +  +  DG +L   ++AC        G   G++ +   +     +   VS  NA
Sbjct: 128 FLEMR-EAFLDMDGFTLSGIITAC--------GINVGLIRQLHALSVVTGLDSYVSVGNA 178

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++T YS+ G  ++A  +F  + ++    + V+W++++  Y Q   G +AL+++ +M   G
Sbjct: 179 LITSYSKNGFLKEARRIFHWLSEDR---DEVSWNSMVVAYMQHREGSKALELYLEMTVRG 235

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L  ++ TL S+L+   +V  LL G + H   IK      G H +   V + LID+Y+KC 
Sbjct: 236 LIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIK-----SGYHQNS-HVGSGLIDLYSKCG 289

Query: 406 SVDV-ARVMFDAIAPKNRDVATWTVMIGSYS-QNGGANDALALFPQMFQQDKLVKPNAFT 463
              +  R +FD I+  N D+  W  MI  YS     +++AL  F Q+  Q    +P+  +
Sbjct: 290 GCMLDCRKVFDEIS--NPDLVLWNTMISGYSLYEDLSDEALECFRQL--QGVGHRPDDCS 345

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L C + AC+ +++   GRQ+H   L+         V N LI MYS+ G++  A+ +FD +
Sbjct: 346 LVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTM 405

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            + N VS+ S++ GY  HG+G ++   F +M +    P  +TF+ +L AC+H+G V+ G 
Sbjct: 406 PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGK 465

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YF+ M ++FGI   A H++C++DLLGRA +L EA  LIE +P +P    W ALL  CRI
Sbjct: 466 IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRI 525

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H NVEL   AANRLL+L+      Y +L+NIY++ GR +D A +R LM+  GVKK+PGCS
Sbjct: 526 HGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCS 585

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD----EEK 759
           W++       F   D  HP  +KI E L  ++++IK +GY P+   A    DD     E+
Sbjct: 586 WIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREE 645

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
              L  HSEKLA+++G+++T  G PI + KNLRIC DCH+AI +IS ++  EI +RDS+R
Sbjct: 646 ELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHR 705

Query: 820 FHHFKEGSCTCKGYW 834
           FH FK+G C+C GYW
Sbjct: 706 FHCFKDGQCSCGGYW 720



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 147/562 (26%), Positives = 245/562 (43%), Gaps = 92/562 (16%)

Query: 14  KTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHL 73
           +T  +L+ L+  IK F  T+T       LL  +C+ L+    +       N+     + L
Sbjct: 25  RTGKSLHALY--IKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV--FSFNTL 80

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           I+AY   +    A  L   + P P SV  +N LI    R      AF+LFL+M       
Sbjct: 81  ISAYAKESYVEVAHQLFDEM-PQPDSV-SYNTLIAAYARRGDTQPAFQLFLEMREAFLDM 138

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D +T   ++ ACG   +      +HA+   +G DS V V NAL+  Y++   L  AR++F
Sbjct: 139 DGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIF 196

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSAC 250
             + +    D VSWN++V AY Q  +    L L+  MT    V+G   D  +L + L+A 
Sbjct: 197 HWLSEDR--DEVSWNSMVVAYMQHREGSKALELYLEMT----VRGLIVDIFTLASVLTAF 250

Query: 251 ASLGTWSRGKQ--------------------------C-GMMEEAKKVFERMKVKDVVSW 283
            ++     G Q                          C G M + +KVF+ +   D+V W
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N M++GYS      D                                  EAL+ FRQ+Q 
Sbjct: 311 NTMISGYSLYEDLSD----------------------------------EALECFRQLQG 336

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G  P+  +LV ++S C+++ +   G++ H   +K  +       + + V NALI MY+K
Sbjct: 337 VGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIP-----SNRISVNNALIAMYSK 391

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C ++  A+ +FD +   N    ++  MI  Y+Q+G    +L LF +M + D    P   T
Sbjct: 392 CGNLRDAKTLFDTMPEHN--TVSYNSMIAGYAQHGMGFQSLHLFQRMLEMD--FTPTNIT 447

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFD 521
               L ACA    +  G+ I+  +++ ++  + P   +  C+ID+  R+G +  A  + +
Sbjct: 448 FISVLAACAHTGRVEDGK-IYFNMMKQKFG-IEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 522 NLK-QRNVVSWTSLMTGYGMHG 542
            +        W++L+    +HG
Sbjct: 506 TIPFDPGFFXWSALLGACRIHG 527



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 213/445 (47%), Gaps = 33/445 (7%)

Query: 17  LTLNHLFTNIKLFSVT--TTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLI 74
           L +   F ++  F+++   T C  I   L+RQ  +L+ V  +   + V N        LI
Sbjct: 129 LEMREAFLDMDGFTLSGIITAC-GINVGLIRQLHALSVVTGLDSYVSVGNA-------LI 180

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
            +Y  +     A  +   +S     V  WN+++   ++ R    A  L+L+M  RG   D
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEV-SWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC-DTLSYARQLF 193
            +T   VL A   +     G   HA +  SG+  N  V + L+ +Y++C   +   R++F
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVF 299

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGD-AEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           DE+  P   D+V WNT+++ Y+   D ++  L  F ++ G V  + D  SLV  +SAC++
Sbjct: 300 DEISNP---DLVLWNTMISGYSLYEDLSDEALECFRQLQG-VGHRPDDCSLVCVISACSN 355

Query: 253 LGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           + + S+G+Q  G+  +      R+ V      NA++  YS+ G+  DA  LF  M +   
Sbjct: 356 MSSPSQGRQVHGLALKLDIPSNRISVN-----NALIAMYSKCGNLRDAKTLFDTMPEH-- 408

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             N V+++++IAGYAQ G G ++L +F++M      P  +T +S+L+ CA  G +  GK 
Sbjct: 409 --NTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGK- 465

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            +   +K+   ++          + +ID+  +   +  A  + + I P +     W+ ++
Sbjct: 466 IYFNMMKQKFGIEPEAGH----FSCMIDLLGRAGKLSEAERLIETI-PFDPGFFXWSALL 520

Query: 432 GSYSQNGGANDALALFPQMFQQDKL 456
           G+   +G    A+    ++ Q D L
Sbjct: 521 GACRIHGNVELAIKAANRLLQLDPL 545



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIP---FVANCLIDMYSRSGDIDTARVVFDNLK 524
           L  C     LR G+ +HA  +++     +P   +++N  + +YS+   +  AR VFD+  
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKS----FVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             NV S+ +L++ Y      + AH  FD+M +    PD V++  L+ A +  G      +
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQ 126

Query: 585 YFDSMSKEF 593
            F  M + F
Sbjct: 127 LFLEMREAF 135


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/649 (37%), Positives = 377/649 (58%), Gaps = 21/649 (3%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           LSYA +LF     P      S+N ++ ++ ++G  E  L LF  M  D  V  D  ++ N
Sbjct: 118 LSYAIRLFRLGPHPPR-SARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVAN 176

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            + +C+ +   S G+  G+   A   F+R  + D    N+++  Y+  G    A  LF  
Sbjct: 177 TVKSCSRMCDLSVGR--GVQAYA---FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHT 231

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           ++ + V    + W+A+IAGY + G   E +++F+ M       + VTL+S+ + C  +G 
Sbjct: 232 VQVKGV----IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGD 287

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
             LG+    Y  ++ +    +      +  AL+DMYAKC  +D AR +FD +   +RDV 
Sbjct: 288 ANLGQWIAEYAEEKGMLRSRN------LATALVDMYAKCGELDKARRLFDRM--HSRDVV 339

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W+ MI  Y+Q+    +ALA+F +M  Q   V PN  T+   L ACA L AL  G+ +H+
Sbjct: 340 AWSAMISGYTQSDRCREALAIFNEM--QGTEVNPNDVTMVSVLSACAVLGALETGKWVHS 397

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y+ R    + +  +   L+D Y++ G I  A   F+++  RN  +WT+L+ G   +G   
Sbjct: 398 YIRRKDLPLTV-ILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSR 456

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F  M +  + P  VTF+ +L ACSH  +V++G ++F SM++++GI  R EHY C+
Sbjct: 457 EALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCM 516

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA  +DEA + I  MP+EP  ++W ALL+ C +H NVE+GE A  +++ L+    
Sbjct: 517 VDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHS 576

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y LLSN YA+ G+WK+ A +R  MK  GV+K PGCS ++ +     FF  D  HPQ  
Sbjct: 577 GNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLT 636

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +IYE +  +++ IK +GY+P T+ A  DVD+ EK   +  HSEKLA+A+G++ + PG  I
Sbjct: 637 EIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATI 696

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R++KNLR+C DCHSA   IS + N EII+RD NRFHHFK+G C+C  YW
Sbjct: 697 RLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 233/483 (48%), Gaps = 82/483 (16%)

Query: 90  LQRISP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGE 147
           L R+ P  P S   +N LIR  +R   P++A  LF++M+      PD++T    +K+C  
Sbjct: 124 LFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSR 183

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           +     G  V A     GF  + FV N+L+ MYA C  +  A  LF  +   G   +++W
Sbjct: 184 MCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKG---VIAW 240

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC-----ASLGTW------ 256
           N ++A Y ++GD +  + +F  M  +V+   D V+L++  +AC     A+LG W      
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGML-EVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAE 299

Query: 257 ------SRG---------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
                 SR           +CG +++A+++F+RM  +DVV+W+AM++GY++     +A A
Sbjct: 300 EKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALA 359

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F +M+   V                                    PN VT+VS+LS CA
Sbjct: 360 IFNEMQGTEVN-----------------------------------PNDVTMVSVLSACA 384

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +GAL  GK  H Y  ++ L      P  +++  AL+D YAKC  +  A   F+++  +N
Sbjct: 385 VLGALETGKWVHSYIRRKDL------PLTVILGTALVDFYAKCGCIKDAVKAFESMPVRN 438

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
               TWT +I   + NG + +AL LF  M + +  ++P   T    L+AC+    +  GR
Sbjct: 439 --TWTWTALIKGMASNGRSREALELFSSMLEAN--IEPTDVTFIGVLLACSHGCLVEEGR 494

Query: 482 QIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
           + H   +   Y  + P + +  C++D+  R+G ID A     N+  + N V W +L++  
Sbjct: 495 R-HFTSMTQDYG-ICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSAC 552

Query: 539 GMH 541
            +H
Sbjct: 553 TVH 555


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/687 (38%), Positives = 398/687 (57%), Gaps = 28/687 (4%)

Query: 152  RCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
            R G  VHA +  SG  D+ + + NAL+ MY +C  +  A  +F  M      D VSWN++
Sbjct: 472  RKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK---DTVSWNSM 528

Query: 211  VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
            ++    +   E  +  F  M  +  V  +  S+++ LS+C+SLG  + G+Q        +
Sbjct: 529  ISGLDHNERFEEAVSCFHTMKRNGMVPSN-FSVISTLSSCSSLGWLTLGRQI-----HGE 582

Query: 271  VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RG 329
             F+     DV   NA++T Y+   S  +   +F +M +     + V+W++ I   A+   
Sbjct: 583  GFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPE----YDQVSWNSFIGALAKYEA 638

Query: 330  HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
               +AL  F +M   G  PN VT +++L+  +S   L LG + H   +K       S  D
Sbjct: 639  SVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKY------SVAD 692

Query: 390  DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            D  + NAL+  Y KC+ ++   ++F  ++ + RD  +W  MI  Y  +G  + A+ L   
Sbjct: 693  DNAIENALLAFYGKCEQMEDCEIIFSRMSER-RDEVSWNSMISGYLHSGILHKAMDLVWP 751

Query: 450  MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
            M Q+ +  K + FT +  L ACA +A L  G ++HA  +R   E  +  V + L+DMY++
Sbjct: 752  MMQRGQ--KLDGFTFATVLSACASVATLERGMEVHACAVRACLESDV-VVGSALVDMYAK 808

Query: 510  SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
             G ID A   F+ +  RN+ SW S+++GY  HG G KA   F +M++ G +PD VTF+ +
Sbjct: 809  CGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGV 868

Query: 570  LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
            L ACSH G+VD+G K+F SM + +G+S R EH++C+VDLLGRA  + +  + I+ MPM+P
Sbjct: 869  LSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDP 928

Query: 630  TPIIWVALLNG-CRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
              +IW  +L   CR +  N ELG+ AA  L+ELE +   +Y LLSN++A  G W+DV   
Sbjct: 929  NILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEA 988

Query: 688  RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
            R  M+   VKK  GCSWV  K+G   F  GD+THP+ +KIYE L  L+ +I+  GYVP+T
Sbjct: 989  RLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPET 1048

Query: 748  SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
             +AL+D++ E K +LL  HSEKLA+A+ +LT     PIRI KNLR+CGDCH+A  +IS I
Sbjct: 1049 KYALYDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKI 1107

Query: 808  INHEIILRDSNRFHHFKEGSCTCKGYW 834
            +  +IILRDSNRFHHF  G C+C  YW
Sbjct: 1108 VGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/552 (26%), Positives = 270/552 (48%), Gaps = 39/552 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS--RCGSSVHAV 160
           W+ LI    + R+PD A  LF  ++  G  P+ +     L+AC +  S+  + G  +HA 
Sbjct: 209 WSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAF 268

Query: 161 ICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           IC     S++ + N LM+MY+ C  ++  A ++FDE+      + V+WN+I++ Y + GD
Sbjct: 269 ICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEI---KFRNSVTWNSIISVYCRRGD 325

Query: 220 AEGGLMLFARMTGDVKVQGDGVSL---VNALSACASLGTWSRGKQCG--MMEEAKKVFER 274
           A     LF+ M      Q +GV L    N  + C+ +        CG  ++E+     E+
Sbjct: 326 AVSAFKLFSVM------QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEK 379

Query: 275 MK-VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
              ++D+   +A+V G++R G  + A  +FK+M       N VT + ++ G A++  G E
Sbjct: 380 SGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDR----NAVTMNGLMVGLARQHQGEE 435

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK----ETHCYTIKRVLSVDGSHPD 389
           A  VF++M+   +E N  +LV LLS       L  GK    E H Y  +  L VD     
Sbjct: 436 AAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGL-VDAR--- 490

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            + + NAL++MY KC ++D A  +F  +  K  D  +W  MI     N    +A++ F  
Sbjct: 491 -ISIGNALVNMYGKCTAIDNACSVFQLMPSK--DTVSWNSMISGLDHNERFEEAVSCFHT 547

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M +++ +V P+ F++   L +C+ L  L  GRQIH    +   ++ +  V+N L+ +Y+ 
Sbjct: 548 M-KRNGMV-PSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVS-VSNALLTLYAE 604

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD-KAHWAFDQMRKEGLAPDGVTFLV 568
           +  I+  + VF  + + + VSW S +     +     +A   F +M + G  P+ VTF+ 
Sbjct: 605 TDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFIN 664

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L A S   ++  G +   ++  ++ ++        ++   G+  ++++   +   M   
Sbjct: 665 ILAAVSSFSVLGLGHQ-IHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSER 723

Query: 629 PTPIIWVALLNG 640
              + W ++++G
Sbjct: 724 RDEVSWNSMISG 735



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 214/467 (45%), Gaps = 30/467 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y    A   A S+ Q + PS  +V W N++I         + A   F  M R G  
Sbjct: 497 LVNMYGKCTAIDNACSVFQ-LMPSKDTVSW-NSMISGLDHNERFEEAVSCFHTMKRNGMV 554

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P  ++    L +C  L     G  +H      G D +V V NAL+ +YA  D+++  +++
Sbjct: 555 PSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKV 614

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQ-SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           F   FQ    D VSWN+ + A A+        L  F  M      + + V+ +N L+A +
Sbjct: 615 F---FQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMM-QAGWRPNRVTFINILAAVS 670

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           S      G Q   +     + +     D    NA++  Y +    ED   +F +M +   
Sbjct: 671 SFSVLGLGHQIHAL-----ILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSE--- 722

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           + + V+W+++I+GY   G  H+A+D+   M   G + +  T  ++LS CASV  L  G E
Sbjct: 723 RRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGME 782

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   ++  L        D++V +AL+DMYAKC  +D A   F+ +  +N  + +W  MI
Sbjct: 783 VHACAVRACLE------SDVVVGSALVDMYAKCGKIDYASRFFELMPVRN--IYSWNSMI 834

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+++G    AL +F +M Q  +   P+  T    L AC+ +  +  G + H   +   
Sbjct: 835 SGYARHGHGQKALKIFTRMKQHGQ--SPDHVTFVGVLSACSHVGLVDEGYK-HFKSMGEV 891

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLM 535
           Y  L P + +  C++D+  R+GD+         +    N++ W +++
Sbjct: 892 YG-LSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVL 937



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 146/550 (26%), Positives = 261/550 (47%), Gaps = 53/550 (9%)

Query: 115 LPDNAFRLFLQMMRRGWHPDEYTF----PFVLKACGELPSS----RCGSSV------HAV 160
            P+ A  LF++++ +  +   YTF     F      +L S     +  SS+      H  
Sbjct: 108 FPEMASHLFMRLLNK--YNSTYTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQ 165

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +  +GF  +VF CN L+ +Y R   L  AR+LFDEM Q    ++VSW+ +++ Y Q+   
Sbjct: 166 LYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQK---NLVSWSCLISGYTQNRMP 222

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           +    LF  +     +  +  ++ +AL AC   G  S G + GM   A  + +   V D+
Sbjct: 223 DEACSLFKGVISS-GLLPNHFAVGSALRACQQCG--STGIKLGMQIHA-FICKLPCVSDM 278

Query: 281 VSWNAMVTGYSRI-GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           +  N +++ YS   GS +DA  +F +++      N VTW+++I+ Y +RG    A  +F 
Sbjct: 279 ILSNVLMSMYSDCSGSIDDAHRVFDEIKFR----NSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 340 QMQFCGLE----PNVVTLVSLLSGCASV---GALLLGKETHCYTIKRVLSVDGSHPDDLM 392
            MQ  G+E    PN  TL SL++   S+   G +LL  E     I++          DL 
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLL--EQMLTRIEK-----SGFLRDLY 387

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V +AL++ +A+   +D A+++F  +  +N  V    +M+G   Q+ G  +A  +F +M  
Sbjct: 388 VGSALVNGFARYGLMDCAKMIFKQMYDRNA-VTMNGLMVGLARQHQG-EEAAKVFKEM-- 443

Query: 453 QDKLVKPNAFTLSCALMACARLAAL----RFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
              LV+ N+ +L   L      + L    R G+++HAY+ R+        + N L++MY 
Sbjct: 444 -KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYG 502

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           +   ID A  VF  +  ++ VSW S+++G   +   ++A   F  M++ G+ P   + + 
Sbjct: 503 KCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVIS 562

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
            L +CS  G +  G +      K +G+         ++ L    + ++E  ++   MP E
Sbjct: 563 TLSSCSSLGWLTLGRQIHGEGFK-WGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-E 620

Query: 629 PTPIIWVALL 638
              + W + +
Sbjct: 621 YDQVSWNSFI 630



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 117/264 (44%), Gaps = 13/264 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   +   +   A  L   MM+RG   D +TF  VL AC  + +   G  VHA   
Sbjct: 729 WNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAV 788

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  +S+V V +AL+ MYA+C  + YA + F+ M    + +I SWN++++ YA+ G  + 
Sbjct: 789 RACLESDVVVGSALVDMYAKCGKIDYASRFFELM---PVRNIYSWNSMISGYARHGHGQK 845

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDVV 281
            L +F RM    +   D V+ V  LSAC+ +G    G K    M E   +  R++     
Sbjct: 846 ALKIFTRMKQHGQ-SPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIE----- 899

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            ++ MV    R G  +      K M  +    N++ W  V+    +    +  L      
Sbjct: 900 HFSCMVDLLGRAGDVKKIEDFIKTMPMDP---NILIWRTVLGACCRANGRNTELGQRAAK 956

Query: 342 QFCGLEPNVVTLVSLLSGCASVGA 365
               LEP       LLS   + G 
Sbjct: 957 MLIELEPQNAVNYVLLSNMHAAGG 980


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/746 (35%), Positives = 398/746 (53%), Gaps = 85/746 (11%)

Query: 108 RRA-VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           RRA ++   P  AF L+  M+      D YT+P +++AC    S      VH  +   GF
Sbjct: 185 RRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGF 244

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           DS+V+V N L+  ++ C  ++ A ++F+E     + D VSWN+I+A Y + G+ E     
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNE---SSVLDSVSWNSILAGYIEIGNVE----- 296

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
                                                   EAK ++ +M  + +++ N+M
Sbjct: 297 ----------------------------------------EAKHIYHQMPERSIIASNSM 316

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           +  +   G   +A  LF +M ++    ++VTWSA+IA + Q     EA+  F  M   G+
Sbjct: 317 IVLFGMRGLVVEACKLFDEMLEK----DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 372

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIK--------------------------RV 380
             + V  VS LS CA++  + +GK  H  ++K                          R 
Sbjct: 373 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARK 432

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L  D ++  DL+  N++I  Y KC  VD A+ +FD++  K  DV +W+ MI  Y+QN   
Sbjct: 433 L-FDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK--DVVSWSSMISGYAQNDLF 489

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           ++ LALF +M  Q    KP+  TL   + ACARLAAL  G+ +HAY+ RN   + +  + 
Sbjct: 490 DETLALFQEM--QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINV-ILG 546

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
             LIDMY + G ++TA  VF  + ++ + +W +L+ G  M+GL + +   F  M+K  + 
Sbjct: 547 TTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVT 606

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           P+ +TF+ +L AC H G+VD+G  +F SM  +  I    +HY C+VDLLGRA +L EA E
Sbjct: 607 PNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEE 666

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           L+  MPM P    W ALL  C+ H + E+G     +L+EL+ + DG + LLSNIYA+ G+
Sbjct: 667 LLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGK 726

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W DV  IR +M    V K PGCS ++       F  GD+THP    I ++L  +  ++K 
Sbjct: 727 WDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKL 786

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GY P  +  L DVD+EEK   LF HSEKLA+A+G++  +P TPIRI KNLRIC DCH+A
Sbjct: 787 EGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTA 846

Query: 801 ITFISMIINHEIILRDSNRFHHFKEG 826
              IS     +I++RD +RFHHF++G
Sbjct: 847 AKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 44/366 (12%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ALI    +  + + A R F+ M + G   DE      L AC  L     G  +H++  
Sbjct: 344 WSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSL 403

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------------------- 202
             G +S + + NAL+ MY++C  +  AR+LFDE +   +                     
Sbjct: 404 KIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKA 463

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   D+VSW+++++ YAQ+   +  L LF  M      + D  +LV+ +SACA L 
Sbjct: 464 IFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMS-GFKPDETTLVSVISACARLA 522

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
              +GK      +   +       +V+    ++  Y + G  E A  +F  M ++ +   
Sbjct: 523 ALEQGKWVHAYIKRNGL-----TINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS-- 575

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
             TW+A+I G A  G    +LD+F  M+ C + PN +T + +L  C  +G +  G+  H 
Sbjct: 576 --TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH-HF 632

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           Y++      D     ++     ++D+  +   +  A  + + + P   DVATW  ++G+ 
Sbjct: 633 YSMIH----DHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM-PMTPDVATWGALLGAC 687

Query: 435 SQNGGA 440
            ++G +
Sbjct: 688 KKHGDS 693



 Score = 92.8 bits (229), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 49/372 (13%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I+ Y+  N    A ++   +      V  W+++I    +  L D    LF +M   G+ 
Sbjct: 448 MISGYLKCNLVDNAKAIFDSMPEK--DVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK 505

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE T   V+ AC  L +   G  VHA I  +G   NV +   L+ MY +C  +  A ++
Sbjct: 506 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 565

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M + GI    +WN ++   A +G  E  L +F+ M     V  + ++ +  L AC  
Sbjct: 566 FYGMIEKGIS---TWNALILGLAMNGLVESSLDMFSNMK-KCHVTPNEITFMGVLGAC-- 619

Query: 253 LGTWSRGKQCGMMEEAKKVFERM----KVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                  +  G+++E +  F  M    K++ +V  +  MV    R G  ++A  L  +M 
Sbjct: 620 -------RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP 672

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC-ASVGAL 366
              +  +V TW A++    + G       V R++    L+P+      LLS   AS G  
Sbjct: 673 ---MTPDVATWGALLGACKKHGDSEMGRRVGRKL--IELQPDHDGFHVLLSNIYASKGKW 727

Query: 367 -----LLGKETHCYTIK--------------RVLSVDGSHPDDLMVINALIDMYAKCK-- 405
                + G  T    +K                L+ D +HPD   + + L++M  K K  
Sbjct: 728 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLE 787

Query: 406 --SVDVARVMFD 415
             + D+  V+ D
Sbjct: 788 GYTPDINEVLLD 799


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/725 (35%), Positives = 403/725 (55%), Gaps = 42/725 (5%)

Query: 125 QMMRRGWHPDEY---TFPFVLKACGELPSS-------RCGSSVHA-VICSSGFDSNVFVC 173
           QM+ R     E+    +P     CG L  S       + G  +HA +I  S  ++N ++ 
Sbjct: 39  QMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLN 98

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
             L A YA C  +S A  +FD +    + +   WN ++  YA +G     L+L+  M   
Sbjct: 99  TKLAAFYAGCGLMSQAEVIFDGIV---LKNSFLWNFMIRGYASNGLPMKSLVLYREMLC- 154

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV----KDVVSWNAMVTG 289
              + D  +    L AC  L          ++E  ++V   + V     D+   N+++  
Sbjct: 155 FGQRADNFTYPFVLKACGDLL---------LVEIGRRVHSEVVVCGLESDIYVGNSLLAM 205

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y++ G    A  +F +M + ++     +W+ +I+GYA+      A  VF  M   GL  +
Sbjct: 206 YAKFGDMGTARMVFDRMAERDL----TSWNTMISGYAKNADSGTAFLVFDLMGKAGLFAD 261

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             TL+ LLS CA + A+  GK  H Y ++  +   G++  +    N+LI+MY  C  +  
Sbjct: 262 CTTLLGLLSACADLKAVKEGKVIHGYAVRNSI---GNY--NKFFTNSLIEMYCNCNCMVD 316

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +F+ +  + +D  +W  MI  Y++NG A ++L LF +M        P+  T    L 
Sbjct: 317 ARRLFERV--RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS--GPDQVTFIAVLG 372

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC ++AALR+G  IH+Y+++  ++     V   L+DMYS+ G +  +R VFD +  +++V
Sbjct: 373 ACDQIAALRYGMSIHSYLVKKGFDA-NTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLV 431

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW++++ GYG+HG G +A    D M+   + PD   F  +L ACSH+G+V +G + F  M
Sbjct: 432 SWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKM 491

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
            KE+ +     HY+C+VDLLGRA  LDEA  +I  M ++PT  IW ALL   R+H N++L
Sbjct: 492 EKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKL 551

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            E++A ++ ++  +   SY  LSNIYA   RW DV R+R++++  G+KK PGCS+++   
Sbjct: 552 AEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDN 611

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F VGD++H Q++ IY  L  L Q++K  GY P TS   +DV++E K  +L++HSE+
Sbjct: 612 MVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSER 671

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A+ ++ T PGT IRITKNLR+CGDCH+    IS +   EII+RD +RFHHF +G C+
Sbjct: 672 LAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCS 731

Query: 830 CKGYW 834
           C  YW
Sbjct: 732 CGDYW 736



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 253/528 (47%), Gaps = 88/528 (16%)

Query: 48  KSLTQVYLIHQQII----VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           KS  Q   +H  +I    ++N T++  + L A Y      S A  +   I     + F W
Sbjct: 73  KSFKQGQQLHAHMISFSILENNTYLN-TKLAAFYAGCGLMSQAEVIFDGIVLK--NSFLW 129

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           N +IR      LP  +  L+ +M+  G   D +T+PFVLKACG+L     G  VH+ +  
Sbjct: 130 NFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVV 189

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
            G +S+++V N+L+AMYA+   +  AR +FD M +    D+ SWNT+++ YA++ D+   
Sbjct: 190 CGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAER---DLTSWNTMISGYAKNADSGTA 246

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------------- 260
            ++F  M G   +  D  +L+  LSACA L     GK                       
Sbjct: 247 FLVFDLM-GKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLI 305

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                C  M +A+++FER++ KD VSWN+M+ GY+R G   DAF        E+++L   
Sbjct: 306 EMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNG---DAF--------ESLRL--- 351

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
                                FR+M   G  P+ VT +++L  C  + AL  G   H Y 
Sbjct: 352 ---------------------FRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K+          + +V  AL+DMY+KC S+  +R +FD +  K+  + +W+ M+  Y  
Sbjct: 391 VKKGFDA------NTIVGTALVDMYSKCGSLACSRRVFDEMPDKS--LVSWSAMVAGYGL 442

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G   +A+++   M  +   V P+    +  L AC+    +  G++I  Y +  +Y  + 
Sbjct: 443 HGRGREAISILDGM--KANSVIPDNGVFTSILSACSHAGLVVEGKEIF-YKMEKEYN-VK 498

Query: 497 PFVA--NCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           P ++  +C++D+  R+G +D A V+   ++ +     W +L+T   +H
Sbjct: 499 PALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 31/327 (9%)

Query: 43  LLRQCKSLTQVY---LIHQQII---VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           LL  C  L  V    +IH   +   + N      + LI  Y + N    A  L +R+   
Sbjct: 268 LLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWK 327

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
                 WN++I    R      + RLF +M   G  PD+ TF  VL AC ++ + R G S
Sbjct: 328 --DTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMS 385

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H+ +   GFD+N  V  AL+ MY++C +L+ +R++FDEM       +VSW+ +VA Y  
Sbjct: 386 IHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDK---SLVSWSAMVAGYGL 442

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G     + +   M  +  +  +GV   + LSAC+           G++ E K++F +M+
Sbjct: 443 HGRGREAISILDGMKANSVIPDNGV-FTSILSACS---------HAGLVVEGKEIFYKME 492

Query: 277 ----VKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
               VK  +S ++ MV    R G  ++A+ + + M    +K     W+A++   A R H 
Sbjct: 493 KEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTME---IKPTSDIWAALLT--ASRLHK 547

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLS 358
           +  L      +   + P VV+    LS
Sbjct: 548 NIKLAEISAQKVFDMNPKVVSSYICLS 574


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 351/609 (57%), Gaps = 46/609 (7%)

Query: 263 GMMEEAKKVFERMK--VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-VKLNVVTWS 319
           G    A+ +F+ M    + VV W+A+V  ++  G  E A+ L ++MR++  V+ NV+TW+
Sbjct: 66  GTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWN 125

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
            +++G  + G   +A+     M   GL  P+   +   LS    VG + +G++ H Y +K
Sbjct: 126 GLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVK 185

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKC-KSVDVARVMFDA-----------IAPKNRD--- 423
                D        V+ ALIDMY KC ++ +V RV  ++           IA  +R+   
Sbjct: 186 AGCRADAC------VVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQV 239

Query: 424 ------------------VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
                             V +WT ++    QNG   +A+  F +M  Q +  +PN+ T+ 
Sbjct: 240 CEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREM--QAQGTEPNSVTIP 297

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
           C L A A +AAL  GR  H + LR  +   + +V++ L+DMY++ G +  AR++FD +  
Sbjct: 298 CVLPAFANVAALMHGRSAHCFALRKGFLHDV-YVSSALVDMYAKCGRVKDARIIFDTMVS 356

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           RNVVSW +++ GY M+G    A W F  M K    PD VTF  LL AC+ +G+ ++G  Y
Sbjct: 357 RNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHY 416

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F  M  E+G+S R EHYAC+V LLGRA +LDEA +LI  MP EP   IW +LL  CR+H 
Sbjct: 417 FKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHG 476

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           NV+L E+AA +L  LE E  G+Y LLSNIYA+   W  V R+R +MK  G+KK  GCSW+
Sbjct: 477 NVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWI 536

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + K        GD +HP    I E +  L  +++ +G+VP T F LHDV+++EK D+L  
Sbjct: 537 EIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAV 596

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A G+++T+PGT +R+ KNLRICGDCH A+ FIS     EI +RD+NRFHHF  
Sbjct: 597 HSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSG 656

Query: 826 GSCTCKGYW 834
           G C+C  +W
Sbjct: 657 GKCSCGDFW 665



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 245/528 (46%), Gaps = 83/528 (15%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD +  P   K+C  LP +R   ++HAV   SG   + FV ++L+  Y R  T   AR L
Sbjct: 18  PDPHLLPTAFKSCPTLPLAR---ALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF------------------------- 227
           FD M +P    +V W+ +VAA+A  GDAEG   L                          
Sbjct: 75  FDGMPRPQR-TVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNR 133

Query: 228 -----------ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
                      A M G+  ++ D   +  ALSA   +G  S G+Q               
Sbjct: 134 SGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADAC 193

Query: 262 -----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                      CG   E  +VF+     DV S NA++ G SR     +A  LFK+     
Sbjct: 194 VVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRG 253

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           V+LNVV+W++++A   Q G   EA++ FR+MQ  G EPN VT+  +L   A+V AL+ G+
Sbjct: 254 VELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGR 313

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             HC+ +++          D+ V +AL+DMYAKC  V  AR++FD +   +R+V +W  M
Sbjct: 314 SAHCFALRK------GFLHDVYVSSALVDMYAKCGRVKDARIIFDTMV--SRNVVSWNAM 365

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           IG Y+  G A +A+ +F  M +  +  KP+  T +C L AC +      GR  +   + N
Sbjct: 366 IGGYAMYGEAVNAVWMFHSMLKCKQ--KPDMVTFTCLLAACTQAGLTEEGRH-YFKEMHN 422

Query: 491 QYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
           +Y  + P + +  C++ +  R+G +D A  +  ++  + +   W SL+    +HG  D A
Sbjct: 423 EYG-VSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
             A +++    L P+     VLL     S  +   +     M K+ G+
Sbjct: 482 EVAAEKLFH--LEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGL 527



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 117/266 (43%), Gaps = 23/266 (8%)

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V  W +++   V+      A   F +M  +G  P+  T P VL A   + +   G S 
Sbjct: 256 LNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSA 315

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H      GF  +V+V +AL+ MYA+C  +  AR +FD M      ++VSWN ++  YA  
Sbjct: 316 HCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSR---NVVSWNAMIGGYAMY 372

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G+A   + +F  M    K + D V+    L+AC          Q G+ EE +  F+ M  
Sbjct: 373 GEAVNAVWMFHSML-KCKQKPDMVTFTCLLAACT---------QAGLTEEGRHYFKEMHN 422

Query: 278 KDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           +  VS     +  MVT   R G  ++A+ L   M  E    +   W +++   + R HG+
Sbjct: 423 EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEP---DAYIWGSLLG--SCRVHGN 477

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLS 358
             L      +   LEP       LLS
Sbjct: 478 VDLAEVAAEKLFHLEPENAGNYVLLS 503



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 114/511 (22%), Positives = 187/511 (36%), Gaps = 91/511 (17%)

Query: 28  LFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSP 85
           L  V+  P   +     + C +L     +H    V  L   P   S L+ AY+       
Sbjct: 11  LRHVSFPPDPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGN 70

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG--------WH----- 132
           A +L   +     +V  W+AL+         + A+RL  +M R G        W+     
Sbjct: 71  ARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSG 130

Query: 133 ------------------------PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
                                   PD       L A G++     G  +H     +G  +
Sbjct: 131 LNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRA 190

Query: 169 NVFVCNALMAMYARC----------DTLSY---------------------ARQLFDEMF 197
           +  V  AL+ MY +C          D  S+                     A +LF E  
Sbjct: 191 DACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFV 250

Query: 198 QPGI-CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
             G+  ++VSW +IVA   Q+G     +  F  M      + + V++   L A A++   
Sbjct: 251 DRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVTIPCVLPAFANVAAL 309

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
             G+        K         DV   +A+V  Y++ G  +DA  +F  M    V  NVV
Sbjct: 310 MHGRSAHCFALRKGFLH-----DVYVSSALVDMYAKCGRVKDARIIFDTM----VSRNVV 360

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+A+I GYA  G    A+ +F  M  C  +P++VT   LL+ C   G    G+    + 
Sbjct: 361 SWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGR----HY 416

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA--PKNRDVATWTVMIGSY 434
            K + +  G  P  +     ++ +  +   +D A   +D I+  P   D   W  ++GS 
Sbjct: 417 FKEMHNEYGVSP-RMEHYACMVTLLGRAGKLDEA---YDLISDMPFEPDAYIWGSLLGSC 472

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
             +G  + A     ++F  +     N   LS
Sbjct: 473 RVHGNVDLAEVAAEKLFHLEPENAGNYVLLS 503



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 7/155 (4%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+   L  A  +C  L      R +HA V         PFVA+ L+  Y R G    AR 
Sbjct: 18  PDPHLLPTAFKSCPTLP---LARALHA-VAEVSGLARDPFVASSLLHAYLRLGTTGNARA 73

Query: 519 VFDNL--KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDGVTFLVLLYACSH 575
           +FD +   QR VV W++L+  +   G  + A    ++MR++ G+ P+ +T+  L+   + 
Sbjct: 74  LFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNR 133

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           SG     +    +M  E  +   A   +C +  +G
Sbjct: 134 SGRARDAVVALATMHGEGLLRPDATGVSCALSAVG 168


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/747 (35%), Positives = 397/747 (53%), Gaps = 70/747 (9%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           +K C  L +SR    +H  I  +      F+ N ++  YA   +  YAR++FD + QP +
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 202 C----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
                                        D V+WN ++  Y+ SG     +  +  M  D
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD 129

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEE 267
                  V+L+  L   +S G  S GKQ                           G + +
Sbjct: 130 FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISD 189

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           AKKVF  +  ++ V +N ++ G    G  EDA  LF+ M +++V     +WSA+I G AQ
Sbjct: 190 AKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSV-----SWSAMIKGLAQ 244

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G   EA++ FR+M+  GL+ +     S+L  C  +GA+  G++ H   I+  L      
Sbjct: 245 NGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQ----- 299

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
            D + V +ALIDMY KCK +  A+ +FD +  KN  V +WT M+  Y Q G A +A+ +F
Sbjct: 300 -DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN--VVSWTAMVVGYGQTGRAGEAVKIF 356

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
             M  Q   + P+ +TL  A+ ACA +++L  G Q H   +       I  V+N L+ +Y
Sbjct: 357 LDM--QRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYIT-VSNSLVTLY 413

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
            + GDID +  +F+ +  R+ VSWT++++ Y   G   +A   FD+M + GL PDGVT  
Sbjct: 414 GKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLT 473

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            ++ ACS +G+V++G +YF+ M  E+GI     HY+C++DL  R+ R++EA+  I GMP 
Sbjct: 474 GVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPF 533

Query: 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
            P  I W  LL+ CR   N+E+G+ AA  L+EL+      YTLLS+IYA+ G+W  VA++
Sbjct: 534 RPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQL 593

Query: 688 RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
           R  MK   V+K PG SW++ K    +F   D + P S +IY  L  L Q+I   GY P T
Sbjct: 594 RRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDT 653

Query: 748 SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
           SF  HDV++  K  +L  HSE+LA+A+G++    G PIR+ KNLR+C DCH+A   IS +
Sbjct: 654 SFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSV 713

Query: 808 INHEIILRDSNRFHHFKEGSCTCKGYW 834
              EI++RD+ RFH FK+G+C+C  +W
Sbjct: 714 TGREILVRDAVRFHRFKDGTCSCGDFW 740


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/686 (36%), Positives = 390/686 (56%), Gaps = 69/686 (10%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           ARQLFD + QP   D  + +T+++A    G +   + +++ +  +  ++ D    + A  
Sbjct: 31  ARQLFDNIPQP---DPTTCSTLISALTTHGLSNEAIKIYSSLQ-ERGIKPDMPVFLAAAK 86

Query: 249 ACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           ACA  G   R K+       CG+M             DV   NA++  Y +    E A  
Sbjct: 87  ACAVSGDALRVKEVHDDATRCGVMS------------DVFVGNALIHAYGKCKCVEGARR 134

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  +    V  +VV+W+++ + Y + G   + +DVFR+M + G++PN +T+ S+L  CA
Sbjct: 135 VFDDL----VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACA 190

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP-- 419
            +  L  GKE H + ++  + V+      L V +AL+ +YAKC SV  AR++FD +    
Sbjct: 191 ELKDLKSGKEIHGFAVRHGMVVN------LFVCSALVSLYAKCLSVREARMVFDLMPHRD 244

Query: 420 ------------KNR-------------------DVATWTVMIGSYSQNGGANDALALFP 448
                       KN+                   D ATW  +IG   +NG + +A+ +F 
Sbjct: 245 VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR 304

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M  Q    KPN  T+S  L AC+    LR G++IH YV R  +++        L+ MY+
Sbjct: 305 KM--QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFR-HWKVGDLTSTTALLYMYA 361

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + GD++ +R VFD +++++VV+W +++    MHG G +A + FD+M    + P+ VTF  
Sbjct: 362 KCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTG 421

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L  CSHS +V++G++ F+SM ++  +   A HY+C+VD+  RA RL+EA + I+GMPME
Sbjct: 422 VLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME 481

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           PT   W ALL  CR++ NVEL +++A +L E+E    G+Y  L NI   A  W + +++R
Sbjct: 482 PTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVR 541

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
            LMK  G+ K PGCSW+Q      TF VGD+++ +S KIY  L  LV+++K  GY P T 
Sbjct: 542 ILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTD 601

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
           + L D+D EEK + L  HSEKLA+A+GIL     + IR+ KNLRICGDCH+AI ++S ++
Sbjct: 602 YVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVV 661

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
              I++RDS RFHHFK G+C+CK  W
Sbjct: 662 GVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 224/453 (49%), Gaps = 47/453 (10%)

Query: 115 LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           L + A +++  +  RG  PD   F    KAC     +     VH      G  S+VFV N
Sbjct: 58  LSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGN 117

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           AL+  Y +C  +  AR++FD++    + D+VSW ++ + Y + G    G+ +F  M G  
Sbjct: 118 ALIHAYGKCKCVEGARRVFDDLV---VRDVVSWTSLSSCYVKCGFPRKGMDVFREM-GWS 173

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEA 268
            V+ + +++ + L ACA L     GK+                          C  + EA
Sbjct: 174 GVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREA 233

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           + VF+ M  +DVVSWN ++T Y +   +E  F+LF KM ++ V+ +  TW+AVI G  + 
Sbjct: 234 RMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMEN 293

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   EA+++FR+MQ  G +PN +T+ S+L  C+    L +GKE HCY  +          
Sbjct: 294 GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRH------WKV 347

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            DL    AL+ MYAKC  ++++R +FD +  + +DV  W  MI + + +G   +AL LF 
Sbjct: 348 GDLTSTTALLYMYAKCGDLNLSRNVFDMM--RRKDVVAWNTMIIANAMHGNGKEALFLFD 405

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN---CLID 505
           +M      V+PN+ T +  L  C+    +  G QI   + R+    L+   AN   C++D
Sbjct: 406 KMLLSR--VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDH---LVEPDANHYSCVVD 460

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTG 537
           +YSR+G ++ A      +      S W +L+  
Sbjct: 461 IYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 493



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 38/292 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W +L    V+   P     +F +M   G  P+  T   +L AC EL   + G  +H 
Sbjct: 144 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 203

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G   N+FVC+AL+++YA+C ++  AR +FD M      D+VSWN ++ AY ++ +
Sbjct: 204 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR---DVVSWNGVLTAYFKNKE 260

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
            E G  LF +M+ D  V+ D  +    +  C   G      +                  
Sbjct: 261 YEKGFSLFLKMSRD-GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITIS 319

Query: 262 -----CGMMEEAKK-------VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                C   E  +        VF   KV D+ S  A++  Y++ G    +  +F  MR++
Sbjct: 320 SILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRK 379

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
               +VV W+ +I   A  G+G EAL +F +M    ++PN VT   +LSGC+
Sbjct: 380 ----DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCS 427



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LI +    GD + AR +FDN+ Q +  + ++L++    HGL ++A   +  +++ G+ PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 563 GVTFLVLLYACSHSG 577
              FL    AC+ SG
Sbjct: 78  MPVFLAAAKACAVSG 92


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/554 (41%), Positives = 344/554 (62%), Gaps = 23/554 (4%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y++      A  +F +MR+ NV    V+W+A+I+GY+QRG   EAL +F QM    
Sbjct: 51  LIILYTKCECLGCARHVFDEMRERNV----VSWTAMISGYSQRGFASEALHLFVQMLRSD 106

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            EPN  T  ++LS C       LG++ H +  KR      ++ + + V ++L+DMYAK  
Sbjct: 107 TEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKR------NYENHIFVGSSLLDMYAKAG 160

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +  AR +F+ +    RDV + T +I  Y+Q G   +AL LF ++  Q + +  N  T +
Sbjct: 161 RIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEALELFCRL--QREGMSSNYVTYA 216

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPF---VANCLIDMYSRSGDIDTARVVFDN 522
             L A + LAAL  G+Q+H++VLR +    +PF   + N LIDMYS+ G+++ AR +F+N
Sbjct: 217 SLLTALSGLAALDHGKQVHSHVLRCE----LPFYVVLQNSLIDMYSKCGNLNYARKIFNN 272

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQ 581
           +  R V+SW +++ GY  HG G +    F  MR+E  + PD VTFL +L  CSH G+ D+
Sbjct: 273 MPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDK 332

Query: 582 GLKYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           GL+ FD M +    I A  EHY C++DLLGRA R++EA ELI+ MP EPT  IW +LL  
Sbjct: 333 GLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGA 392

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR+H+N  +GE    RLLE+E E  G+Y +LSN+YA+AGRW+DV  +R LM    V K P
Sbjct: 393 CRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEP 452

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           G SW++  +   TF+  DR+HP+ ++++  +  L+ + K  GYVP  S  L+DVD+E+K 
Sbjct: 453 GRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKE 512

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            +L  HSEKLALA+G+++T+ G P+R+ KNLRIC DCH+   F+S +   ++ +RD NRF
Sbjct: 513 KILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRF 572

Query: 821 HHFKEGSCTCKGYW 834
           HH   G C+C  YW
Sbjct: 573 HHVAGGICSCGDYW 586



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 198/433 (45%), Gaps = 78/433 (18%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           +  +L  C    + R G  VHA +  + +   V++   L+ +Y +C+ L  AR +FDEM 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +    ++VSW  +++ Y+Q G A   L LF +M      + +  +    LS+C     + 
Sbjct: 73  ER---NVVSWTAMISGYSQRGFASEALHLFVQMLRS-DTEPNEFTFATVLSSCTGFSGFE 128

Query: 258 RGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+Q                           G + EA+ VFE +  +DVVS  A+++GY+
Sbjct: 129 LGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 188

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           ++G  E+A  LF ++++E +  N VT++                                
Sbjct: 189 QLGLDEEALELFCRLQREGMSSNYVTYA-------------------------------- 216

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
              SLL+  + + AL  GK+ H + ++  L      P  +++ N+LIDMY+KC +++ AR
Sbjct: 217 ---SLLTALSGLAALDHGKQVHSHVLRCEL------PFYVVLQNSLIDMYSKCGNLNYAR 267

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F+ +    R V +W  M+  YS++G   + + LF  M +++K VKP++ T    L  C
Sbjct: 268 KIFNNMPV--RTVISWNAMLVGYSKHGKGIEVVKLFKLMREENK-VKPDSVTFLAVLSGC 324

Query: 472 ARLAALRFGRQIHAYVLR--NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNV 528
           +       G ++   ++   ++ E  I     C+ID+  R+G ++ A  +   +  +   
Sbjct: 325 SHGGLEDKGLEMFDEMMNGGDEIEAGIEHYG-CVIDLLGRAGRVEEAFELIKKMPFEPTA 383

Query: 529 VSWTSLMTGYGMH 541
             W SL+    +H
Sbjct: 384 AIWGSLLGACRVH 396



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 44/349 (12%)

Query: 35  PCIKIT--SLLLRQC---KSLTQVYLIHQQIIVQNLTHVPP----SHLIAAYVSHNAPSP 85
           P IK    ++LL +C   +++ +   +H  +I     ++PP    + LI  Y        
Sbjct: 6   PEIKFDGYNMLLNECVNKRAVREGQRVHAHMI--KTCYLPPVYLSTRLIILYTKCECLGC 63

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +   +     +V  W A+I    +      A  LF+QM+R    P+E+TF  VL +C
Sbjct: 64  ARHVFDEMRER--NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSC 121

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
                   G  +H+ I    +++++FV ++L+ MYA+   +  AR +F+ + +    D+V
Sbjct: 122 TGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPER---DVV 178

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---- 261
           S   I++ YAQ G  E  L LF R+  +  +  + V+  + L+A + L     GKQ    
Sbjct: 179 SCTAIISGYAQLGLDEEALELFCRLQRE-GMSSNYVTYASLLTALSGLAALDHGKQVHSH 237

Query: 262 ----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                 CG +  A+K+F  M V+ V+SWNAM+ GYS+ G   + 
Sbjct: 238 VLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEV 297

Query: 300 FALFKKMRQEN-VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
             LFK MR+EN VK + VT+ AV++G +  G   + L++F +M   G E
Sbjct: 298 VKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDE 346



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 152/350 (43%), Gaps = 21/350 (6%)

Query: 21  HLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQIIVQNL-THV-PPSHLIA 75
           HLF  +++    T P     + +L  C   +   L   IH  I  +N   H+   S L+ 
Sbjct: 97  HLF--VQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLD 154

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
            Y        A  + + +      V    A+I    +L L + A  LF ++ R G   + 
Sbjct: 155 MYAKAGRIHEARGVFECLPER--DVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNY 212

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
            T+  +L A   L +   G  VH+ +        V + N+L+ MY++C  L+YAR++F+ 
Sbjct: 213 VTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNN 272

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M    +  ++SWN ++  Y++ G     + LF  M  + KV+ D V+ +  LS C+  G 
Sbjct: 273 M---PVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGL 329

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
             +G +  M +E     + ++   +  +  ++    R G  E+AF L KKM  E      
Sbjct: 330 EDKGLE--MFDEMMNGGDEIEA-GIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPT---A 383

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP-NVVTLVSLLSGCASVG 364
             W +++   A R H +  +  F   +   +EP N    V L +  AS G
Sbjct: 384 AIWGSLLG--ACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAG 431



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 104/201 (51%), Gaps = 16/201 (7%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLKQR 526
           L  C    A+R G+++HA++++  Y  L P +++  LI +Y++   +  AR VFD +++R
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCY--LPPVYLSTRLIILYTKCECLGCARHVFDEMRER 74

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NVVSWT++++GY   G   +A   F QM +    P+  TF  +L +C+     + G +  
Sbjct: 75  NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134

Query: 587 DSMSKEFGISARAEHY----ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             + K        E++    + ++D+  +A R+ EA  + E +P E   +   A+++G  
Sbjct: 135 SHIFKR-----NYENHIFVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG-- 186

Query: 643 IHANVELGELAANRLLELESE 663
            +A + L E A      L+ E
Sbjct: 187 -YAQLGLDEEALELFCRLQRE 206


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/716 (34%), Positives = 388/716 (54%), Gaps = 95/716 (13%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            R  +Q++ R   P   T+  +++ C +  +   G  VH  I +SGF   + + N ++ M
Sbjct: 72  LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGM 131

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           YA+C +L  AR++FDEM +  +C   SWN +V  YA+ G                     
Sbjct: 132 YAKCGSLVDARKVFDEMPERDVC---SWNVMVNGYAEVG--------------------- 167

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                   ++EEA+ +F+ M  +D  SW AMVTGY +    E+A
Sbjct: 168 ------------------------LLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEA 203

Query: 300 FALFKKM-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
             L+  M R  N K                                   PN+ T+ S ++
Sbjct: 204 LVLYSLMQRVPNSK-----------------------------------PNIFTVSSAVA 228

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
             A++  +  GKE H + ++  L        D ++ ++L+DMY KC  +D AR +FD I 
Sbjct: 229 AAAAIKCIRRGKEIHGHIVRAGLD------SDEVLWSSLMDMYGKCGCIDEARNIFDKII 282

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
             ++DV +WT MI  Y ++    +  +LF ++       +PN +T S  L ACA L    
Sbjct: 283 --DKDVVSWTSMIDRYFKSSRWREGFSLFSELIGS--CERPNEYTFSGVLNACADLTTEE 338

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            GRQ+H Y+ R  ++    F ++ LIDMY++ G+I++AR V D   + ++VS TSL+ GY
Sbjct: 339 LGRQVHGYMTRVGFDPY-SFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGY 397

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
             +G  D+A   FD + K G  PD VTF+ +L AC+H+G+V++GL++F S++++  ++  
Sbjct: 398 AQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHT 457

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
           ++HY C+VDLL R+ R ++   ++  MPM+P+  +W ++L GC  + N++L E AA  L 
Sbjct: 458 SDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELF 517

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           ++E E   +Y  ++NIYA AG+W++  ++R  M+  G+ K+PG SW + K     F   D
Sbjct: 518 KIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAAD 577

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
            +HP   +I E L  L +++K  GYVP TS  LHDV+DE+K + L  HSEKLA+A+ IL+
Sbjct: 578 TSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILS 637

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           T  GT I++ KNLR C DCHSAI FIS I   +I +RDS RFH F+ G C+C+ YW
Sbjct: 638 TEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 16/267 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W ++I R  +       F LF +++     P+EYTF  VL AC +L +   G  VH 
Sbjct: 286 VVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHG 345

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GFD   F  ++L+ MY +C  +  AR + D   +P   D+VS  +++  YAQ+G 
Sbjct: 346 YMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKP---DLVSLTSLIGGYAQNGK 402

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F  +      + D V+ VN LSAC   G   +G     +E    + E+  +  
Sbjct: 403 PDEALKYFDLLLKS-GTKPDHVTFVNVLSACTHAGLVEKG-----LEFFYSITEKHDLTH 456

Query: 280 VVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
               +  +V   +R G FE   ++  +M  +  K     W++V+ G +  G+   A +  
Sbjct: 457 TSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKF---LWASVLGGCSTYGNIDLAEEAA 513

Query: 339 RQMQFCGLEP-NVVTLVSLLSGCASVG 364
           +++    +EP N VT V++ +  A+ G
Sbjct: 514 QEL--FKIEPENPVTYVTMANIYAAAG 538


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 270/732 (36%), Positives = 408/732 (55%), Gaps = 23/732 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   +R  L   + R F  M R     +  T   +L  CG + + + G  +H+++ 
Sbjct: 200 WNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVL 259

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G++SNV   N L+ MY+       A  +F  M +    D++SWN+++A YAQ G+   
Sbjct: 260 KFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEK---DMISWNSMMACYAQDGNCLD 316

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L L A M   ++   + V+  +AL+AC+     + GK    +     V      ++V+ 
Sbjct: 317 ALKLLATMF-YMRRGANYVTFTSALAACSDPEFATEGKILHAL-----VIHVGLHENVIV 370

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA+VT Y++ G   +A  +F+ M     K + VTW+A+I G+A      EAL  F+ M+
Sbjct: 371 GNALVTLYAKSGLMIEAKKVFQTMP----KRDGVTWNALIGGHADSEEPDEALKAFKLMR 426

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+  N +T+ ++L  C +   LL     H   I   + + G   D+  V N+LI MYA
Sbjct: 427 EEGVPINYITISNVLGACLAPNDLL----EHGMPIHAFIILTGFQSDEY-VQNSLITMYA 481

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  ++ +  +FD +  KN   + W  M+ + + +G   +AL    +M +    V  + F
Sbjct: 482 KCGDLNSSNNIFDRLTSKN--ASAWNAMMAANAHHGHMEEALKFLLEMRRAG--VNVDEF 537

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           + S  L A A+LA L  G+Q+H   ++   +   PFVA+  +DMY + G+ID    +   
Sbjct: 538 SFSECLAAAAKLAILEEGQQLHGLAVKLGCDS-NPFVASATMDMYGKCGEIDDVLRIIPR 596

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
              R+ +SW  L + +  HG  +KA   F +M   G+ PD VTF+ LL ACSH GMV++G
Sbjct: 597 PINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEG 656

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L Y+DSM KEFGI A+  H  CI+DLLGR+ R  EA   I+ MP+ PT  +W +LL  C+
Sbjct: 657 LAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACK 716

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            H N+ELG  A   LL+L+   D +Y L SNI A  G+W+DV +IR  M    +KK+P C
Sbjct: 717 THGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPAC 776

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWV+ K   + F +GD +HPQ+ +IY  L  L + IK  GY+P  S+AL D D+E+K   
Sbjct: 777 SWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHN 836

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L+ HSE+LALAYG++++  G+ ++I KNLR+CGDCHS   F S I+  +I+LRD  RFH 
Sbjct: 837 LWNHSERLALAYGLISSPEGSTLKIFKNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQ 896

Query: 823 FKEGSCTCKGYW 834
           F  G C+C  YW
Sbjct: 897 FSGGQCSCTDYW 908



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 158/636 (24%), Positives = 299/636 (47%), Gaps = 35/636 (5%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  Y ++   + A+ + Q +     +V  W AL+   V    P     ++ +M   G
Sbjct: 69  TSLVHLYGNYGLAADAMKVFQEMIYK--NVVSWTALMVAYVDYGEPSMVMNIYRRMRSEG 126

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              ++ T   V+  C  L +   G  V   +   G ++NV V N+L++M+    ++  A 
Sbjct: 127 MSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEAC 186

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            +F  M +    D +SWN+++AAY ++G  +  L  F+ M   V  + +  +L   L+ C
Sbjct: 187 YVFSGMDEH---DTISWNSMIAAYIRNGLCKESLRCFSWMF-RVHKEINSTTLSTMLAGC 242

Query: 251 ASLGT--WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
            S+    W RG    +++            +V + N ++T YS  G  EDA  +F+ M  
Sbjct: 243 GSVDNLKWGRGIHSLVLKFGWN-------SNVCASNTLITMYSDAGRCEDAELVFQGM-- 293

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             V+ ++++W++++A YAQ G+  +AL +   M +     N VT  S L+ C+       
Sbjct: 294 --VEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATE 351

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK  H   I   L       ++++V NAL+ +YAK   +  A+ +F  + PK RD  TW 
Sbjct: 352 GKILHALVIHVGLH------ENVIVGNALVTLYAKSGLMIEAKKVFQTM-PK-RDGVTWN 403

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC-ARLAALRFGRQIHAYV 487
            +IG ++ +   ++AL  F  M ++   V  N  T+S  L AC A    L  G  IHA++
Sbjct: 404 ALIGGHADSEEPDEALKAFKLMREEG--VPINYITISNVLGACLAPNDLLEHGMPIHAFI 461

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +   ++    +V N LI MY++ GD++++  +FD L  +N  +W ++M     HG  ++A
Sbjct: 462 ILTGFQS-DEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEA 520

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
                +MR+ G+  D  +F   L A +   ++++G +    ++ + G  +     +  +D
Sbjct: 521 LKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEG-QQLHGLAVKLGCDSNPFVASATMD 579

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           + G+   +D+ + +I   P+  + + W  L +    H   E  +   + ++ L  + D  
Sbjct: 580 MYGKCGEIDDVLRIIP-RPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHV 638

Query: 668 --YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
              +LLS         + +A   S++K  G+  + G
Sbjct: 639 TFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIG 674



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 213/457 (46%), Gaps = 27/457 (5%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC-GSSVHAVICSSGFDSNVFVCNALM 177
           + R F +M   G  P       ++ AC         G  VH  I   G  S+VFV  +L+
Sbjct: 13  SMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGTSLV 72

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            +Y      + A ++F EM      ++VSW  ++ AY   G+    + ++ RM  +    
Sbjct: 73  HLYGNYGLAADAMKVFQEMIYK---NVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSC 129

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D  ++ + +S C SL     G Q         V +     +V   N++++ +   GS E
Sbjct: 130 NDN-TMSSVISTCVSLENELLGYQV-----LGHVIKYGLETNVSVANSLISMFGYFGSVE 183

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           +A  +F  M +     + ++W+++IA Y + G   E+L  F  M     E N  TL ++L
Sbjct: 184 EACYVFSGMDEH----DTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTML 239

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
           +GC SV  L  G+  H   +K   +       ++   N LI MY+     + A ++F  +
Sbjct: 240 AGCGSVDNLKWGRGIHSLVLKFGWN------SNVCASNTLITMYSDAGRCEDAELVFQGM 293

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  D+ +W  M+  Y+Q+G   DAL L   MF   +    N  T + AL AC+     
Sbjct: 294 VEK--DMISWNSMMACYAQDGNCLDALKLLATMFYMRR--GANYVTFTSALAACSDPEFA 349

Query: 478 RFGRQIHAYVLR-NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
             G+ +HA V+    +E +I  V N L+ +Y++SG +  A+ VF  + +R+ V+W +L+ 
Sbjct: 350 TEGKILHALVIHVGLHENVI--VGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIG 407

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           G+      D+A  AF  MR+EG+  + +T   +L AC
Sbjct: 408 GHADSEEPDEALKAFKLMREEGVPINYITISNVLGAC 444



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 206/442 (46%), Gaps = 33/442 (7%)

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
           ++ + ++G     +  F  M  D  V+  G+++ + ++AC     W       M+ E  +
Sbjct: 1   MSGFVRAGSYRESMRFFNEMR-DFGVKPSGIAVASLVTACER-SEW-------MLIEGVQ 51

Query: 271 VFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           V   +     + DV    ++V  Y   G   DA  +F    QE +  NVV+W+A++  Y 
Sbjct: 52  VHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVF----QEMIYKNVVSWTALMVAYV 107

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
             G     ++++R+M+  G+  N  T+ S++S C S+   LLG +   + IK  L  + S
Sbjct: 108 DYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVS 167

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
                 V N+LI M+    SV+ A  +F  +     D  +W  MI +Y +NG   ++L  
Sbjct: 168 ------VANSLISMFGYFGSVEEACYVFSGM--DEHDTISWNSMIAAYIRNGLCKESLRC 219

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F  MF+  K +  N+ TLS  L  C  +  L++GR IH+ VL+  +   +   +N LI M
Sbjct: 220 FSWMFRVHKEI--NSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVC-ASNTLITM 276

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           YS +G  + A +VF  + +++++SW S+M  Y   G    A      M       + VTF
Sbjct: 277 YSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTF 336

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
              L ACS      +G K   ++    G+         +V L  ++  + EA ++ + MP
Sbjct: 337 TSALAACSDPEFATEG-KILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMP 395

Query: 627 MEPTPIIWVALLNGCRIHANVE 648
            +   + W AL+ G   HA+ E
Sbjct: 396 -KRDGVTWNALIGG---HADSE 413


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/692 (36%), Positives = 394/692 (56%), Gaps = 32/692 (4%)

Query: 151 SRCGSSVHAVICSSGFDS--NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
           S+CGS +H    S       NVF  N L+  YA+   +  AR++FDE+ QP   DIVS+N
Sbjct: 55  SKCGS-LHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQP---DIVSYN 110

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEA 268
           T++AAYA  G+    L LF  +  ++++  DG +L   ++AC       R   C ++   
Sbjct: 111 TLIAAYADRGECGPTLRLFEEVR-ELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCG 169

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
              +  +        NA++  YSR G   +A  +F++M  E    + V+W+A+I    Q 
Sbjct: 170 HDCYASVN-------NAVLACYSRKGFLSEARRVFREM-GEGGGRDEVSWNAMIVACGQH 221

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
             G EA+ +FR+M   GL+ ++ T+ S+L+    V  L+ G++ H   IK      G H 
Sbjct: 222 REGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIK-----SGFHG 276

Query: 389 DDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNRDVATWTVMIGSYS-QNGGANDALA 445
           +   V + LID+Y+KC    V+  +V  +  AP   D+  W  MI  +S     + D L 
Sbjct: 277 NS-HVGSGLIDLYSKCAGSMVECRKVFEEITAP---DLVLWNTMISGFSLYEDLSEDGLW 332

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
            F +M  Q    +P+  +  C   AC+ L++   G+Q+HA  +++        V N L+ 
Sbjct: 333 CFREM--QRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVA 390

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MYS+ G++  AR VFD + + N VS  S++ GY  HG+  ++   F+ M ++ +AP+ +T
Sbjct: 391 MYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSIT 450

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F+ +L AC H+G V++G KYF+ M + F I   AEHY+C++DLLGRA +L EA  +IE M
Sbjct: 451 FIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P  P  I W  LL  CR H NVEL   AAN  L LE      Y +LSN+YA+A RW++ A
Sbjct: 511 PFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAA 570

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
            ++ LM+  GVKK+PGCSW++  +    F   D +HP  ++I+  +  +++++K  GYVP
Sbjct: 571 TVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVP 630

Query: 746 QTSFAL---HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
              +AL    +V+ +E+   L  HSEKLA+A+G+++T  G PI + KNLRICGDCH+A+ 
Sbjct: 631 DIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVK 690

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS +   EI +RD++RFH FKEG C+C+ YW
Sbjct: 691 LISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 172/357 (48%), Gaps = 31/357 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    + R    A  LF +M+RRG   D +T   VL A   +     G   H ++ 
Sbjct: 211 WNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMI 270

Query: 163 SSGFDSNVFVCNALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD-A 220
            SGF  N  V + L+ +Y++C  ++   R++F+E+  P   D+V WNT+++ ++   D +
Sbjct: 271 KSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAP---DLVLWNTMISGFSLYEDLS 327

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV-FERMKVKD 279
           E GL  F  M  +   + D  S V   SAC++L + S GKQ   +     V + R+ V  
Sbjct: 328 EDGLWCFREMQRN-GFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVN- 385

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               NA+V  YS+ G+  DA  +F  M +     N V+ +++IAGYAQ G   E+L +F 
Sbjct: 386 ----NALVAMYSKCGNVHDARRVFDTMPEH----NTVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVDGSHPDDLMVINALI 398
            M    + PN +T +++LS C   G +  G++      +R  +  +  H       + +I
Sbjct: 438 LMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEH------YSCMI 491

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-------GANDALALFP 448
           D+  +   +  A  + + + P N     W  ++G+  ++G        AN+ L L P
Sbjct: 492 DLLGRAGKLKEAERIIETM-PFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEP 547



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 29/290 (10%)

Query: 103 WNALIRR-AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WN +I   ++   L ++    F +M R G+ PD+ +F  V  AC  L S   G  VHA+ 
Sbjct: 313 WNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALA 372

Query: 162 CSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             S    N V V NAL+AMY++C  +  AR++FD M +    + VS N+++A YAQ G  
Sbjct: 373 IKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEH---NTVSLNSMIAGYAQHGVE 429

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-- 278
              L LF  M  +  +  + ++ +  LSAC            G +EE +K F  MK +  
Sbjct: 430 VESLRLFELML-EKDIAPNSITFIAVLSACV---------HTGKVEEGQKYFNMMKERFC 479

Query: 279 ---DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              +   ++ M+    R G  ++A  + + M         + W+ ++   A R HG+  L
Sbjct: 480 IEPEAEHYSCMIDLLGRAGKLKEAERIIETM---PFNPGSIEWATLLG--ACRKHGNVEL 534

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            V    +F  LEP       +LS   +  A    +     T+KR++   G
Sbjct: 535 AVKAANEFLRLEPYNAAPYVMLSNMYASAA----RWEEAATVKRLMRERG 580



 Score = 46.2 bits (108), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIP---FVANCLIDMYSRSGDIDTARVVFDNLK 524
           L AC     L  G+ +HA   ++    LIP   +++N    +YS+ G +  A+  F   +
Sbjct: 16  LKACIAQRDLITGKILHALYFKS----LIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQ 71

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             NV S+ +L+  Y  H L   A   FD++ +    PD V++  L+ A +  G     L+
Sbjct: 72  YPNVFSYNTLINAYAKHSLIHIARRVFDEIPQ----PDIVSYNTLIAAYADRGECGPTLR 127

Query: 585 YFDSMSK 591
            F+ + +
Sbjct: 128 LFEEVRE 134


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/677 (38%), Positives = 385/677 (56%), Gaps = 37/677 (5%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           D NVF  NA++A YA+      A QLFD++ +P   D+VS+NT+++AYA  G+    L L
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEP---DLVSYNTLISAYADCGETAPALGL 127

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN-A 285
           F+ M  ++ +  D  +L   ++AC            G++ +   V         VS N A
Sbjct: 128 FSGMR-EMGLDMDXFTLSAVITACCD--------DVGLIGQLHSVAVSSGFDSYVSVNNA 178

Query: 286 MVTGYSRIGSFEDAFALFKKM---RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           ++T Y + G  +DA  +F  M   R E      V+W+++I  Y Q   G +AL +F++M 
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDE------VSWNSMIVAYGQHQEGSKALGLFQEMV 232

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             GL  ++ TL S+L+    +  L  G + H   IK      G H +   V + LID+Y+
Sbjct: 233 RRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-----GFHQNS-HVGSGLIDLYS 286

Query: 403 KCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG-ANDALALFPQMFQQDKLVKPN 460
           KC   +   R +F+ I     D+  W  M+  YSQN     DAL  F QM  Q    +PN
Sbjct: 287 KCGGGMSDCRKVFEEITEP--DLVLWNTMVSGYSQNEEFLEDALECFRQM--QGIGYRPN 342

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             +  C + AC+ L++   G+QIH+  L++        V N LI MYS+ G++  AR +F
Sbjct: 343 DCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF 402

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D + + N VS  S++ GY  HG+  ++   F  M +  +AP  +TF+ +L AC+H+G V+
Sbjct: 403 DRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVE 462

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G  YF+ M ++F I   AEHY+C++DLLGRA +L EA  LI  MP  P  I W +LL  
Sbjct: 463 EGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGA 522

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR H N+EL   AAN++L+LE      Y +LSN+YA+AGRW++VA +R  M+  GVKK+P
Sbjct: 523 CRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKP 582

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++ K+    F   D +HP  ++IYE L  +  ++K  GYVP   +AL   D    G
Sbjct: 583 GCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGG 642

Query: 761 D---LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           +    L  HSEKLA+A+G+++T  G P+ + KNLRICGDCH+AI FIS I   EI +RD+
Sbjct: 643 EKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 818 NRFHHFKEGSCTCKGYW 834
           +RFH FKEG C+C  YW
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 230/554 (41%), Gaps = 89/554 (16%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           LL  +C  L       Q I   N+     + +IAAY   + P  A  L  +I P P  + 
Sbjct: 51  LLYSKCGRLAWARKAFQDISDPNVFSF--NAIIAAYAKESRPLIAHQLFDQI-PEP-DLV 106

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            +N LI           A  LF  M   G   D +T   V+ AC +         +H+V 
Sbjct: 107 SYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVA 164

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            SSGFDS V V NAL+  Y +   L  A+++F  M   GI D VSWN+++ AY Q  +  
Sbjct: 165 VSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM--GGIRDEVSWNSMIVAYGQHQEGS 222

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
             L LF  M     +  D  +L + L+A   L   S G Q                    
Sbjct: 223 KALGLFQEMV-RRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGL 281

Query: 262 ------C-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF-EDAFALFKKMRQENVKL 313
                 C G M + +KVFE +   D+V WN MV+GYS+   F EDA   F          
Sbjct: 282 IDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECF---------- 331

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                    RQMQ  G  PN  + V ++S C+++ +   GK+ H
Sbjct: 332 -------------------------RQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K  +       + + V NALI MY+KC ++  AR +FD +A  N    +   MI  
Sbjct: 367 SLALKSDIP-----SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHN--TVSLNSMIAG 419

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+Q+G   ++L LF  M ++   + P + T    L ACA    +  G   +  +++ ++ 
Sbjct: 420 YAQHGIEMESLHLFQWMLERQ--IAPTSITFISVLSACAHTGRVEEGWN-YFNMMKEKFN 476

Query: 494 MLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKA 547
            + P   +  C+ID+  R+G +  A  +   +      + W SL+     HG   L  KA
Sbjct: 477 -IEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKA 535

Query: 548 HWAFDQMRKEGLAP 561
                Q+     AP
Sbjct: 536 ANQVLQLEPSNAAP 549


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 266/790 (33%), Positives = 411/790 (52%), Gaps = 87/790 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WN L+    +     +A   F+ M R G   P+ +TF   +K+CG L        +  ++
Sbjct: 129 WNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLL 188

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C------------------ 202
              GF  +  V   ++ M+ RC  + +A + F ++ +P + C                  
Sbjct: 189 TKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHAL 248

Query: 203 ---------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
                    D+VSWN +V+A +QSG A   L +   M  +  V+ D  +  ++L+ACA L
Sbjct: 249 ELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMH-NRGVRLDSTTYTSSLTACAKL 307

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
            +   GKQ        +V   +   D    +AMV  Y++ G F++A  +F  +R  N   
Sbjct: 308 SSLGWGKQL-----HAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNT-- 360

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V+W+ +I G+ Q G   E+L++F QM+   +  +   L +++SGC++   + L ++ H
Sbjct: 361 --VSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLH 418

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------ 421
                  LS+   H   +++ N+LI MYAKC ++  A  +F ++  ++            
Sbjct: 419 S------LSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYS 472

Query: 422 -----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
                            R+V TW  M+G+Y Q+G   D L ++  M  + K V P+  T 
Sbjct: 473 QVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTE-KDVIPDWVTY 531

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
                 CA + A + G QI  + ++    +L   V N +I MYS+ G I  AR +FD L 
Sbjct: 532 VTLFRGCADMGANKLGDQITGHTVKVGL-ILDTSVMNAVITMYSKCGRISEARKIFDFLS 590

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           ++++VSW +++TGY  HG+G +A   FD M K+G  PD ++++ +L +CSHSG+V +G  
Sbjct: 591 RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKF 650

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YFD + ++  +S   EH++C+VDLL RA  L EA  LI+ MPM+PT  +W ALL+ C+ H
Sbjct: 651 YFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTH 710

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N EL ELAA  L +L+S   G Y LL+ IYA+AG+  D A++R LM+  G+KK PG SW
Sbjct: 711 GNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSW 770

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           ++ K     F   D +HPQ   I E L  L+++I  +GYV   S                
Sbjct: 771 MEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRTESLRSE-----------I 819

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLA+A+GI+      PI I KNLRICGDCH+ I  IS +   E ++RD+ RFHHFK
Sbjct: 820 HHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFK 879

Query: 825 EGSCTCKGYW 834
            GSC+C  YW
Sbjct: 880 GGSCSCGDYW 889



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 244/532 (45%), Gaps = 55/532 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++A Y        AL L + +      V  WN ++    +      A  + + M  RG  
Sbjct: 234 MLAGYAKSYGVDHALELFESMPER--DVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D  T+   L AC +L S   G  +HA +  S    + +V +A++ +YA+C     AR++
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRV 351

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  +      + VSW  ++  + Q G     L LF +M  ++ +  D  +L   +S C++
Sbjct: 352 FSSLRDR---NTVSWTVLIGGFLQYGCFSESLELFNQMRAEL-MTVDQFALATIISGCSN 407

Query: 253 LGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
                  +Q                          CG ++ A+ +F  M+ +D+VSW  M
Sbjct: 408 RMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGM 467

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           +T YS++G+   A   F  M       NV+TW+A++  Y Q G   + L ++  M     
Sbjct: 468 LTAYSQVGNIGKAREFFDGMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKD 523

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           + P+ VT V+L  GCA +GA  LG +   +T+K  L +D S      V+NA+I MY+KC 
Sbjct: 524 VIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTS------VMNAVITMYSKCG 577

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +  AR +FD ++ K  D+ +W  MI  YSQ+G    A+ +F  M +  K  KP+  +  
Sbjct: 578 RISEARKIFDFLSRK--DLVSWNAMITGYSQHGMGKQAIEIFDDMLK--KGAKPDYISYV 633

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDTARVVFDNL 523
             L +C+    ++ G+     + R+    + P +   +C++D+ +R+G++  A+ + D +
Sbjct: 634 AVLSSCSHSGLVQEGKFYFDMLKRDHN--VSPGLEHFSCMVDLLARAGNLIEAKNLIDEM 691

Query: 524 KQRNVVS-WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYA 572
             +     W +L++    HG  + A  A   +     +PD  G   L  +YA
Sbjct: 692 PMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLD-SPDSGGYMLLAKIYA 742



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 233/504 (46%), Gaps = 75/504 (14%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF-DEMFQPG 200
           L++CG   +     ++H  + S G  S VF+ N L+  Y  C  L  AR L   ++ +P 
Sbjct: 35  LRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEP- 93

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++++ N ++  YA+                                            
Sbjct: 94  --NVITHNIMMNGYAK-------------------------------------------- 107

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL-NVVTWS 319
             G + +A+++F RM  +DV SWN +++GY + G F DA   F  MR+    L N  T+ 
Sbjct: 108 -LGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFG 166

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLE--PNVVT-LVSLLSGCASVGALLLGKETHCYT 376
             +      G    AL +   +   G +  P+V T +V +   C +V           + 
Sbjct: 167 CAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVD----------FA 216

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K+   ++   P  +   N+++  YAK   VD A  +F+++    RDV +W +M+ + SQ
Sbjct: 217 SKQFSQIE--RP-TVFCRNSMLAGYAKSYGVDHALELFESMP--ERDVVSWNMMVSALSQ 271

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G A +AL++   M   ++ V+ ++ T + +L ACA+L++L +G+Q+HA V+R+    + 
Sbjct: 272 SGRAREALSVAVDM--HNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS-LPCID 328

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           P+VA+ ++++Y++ G    AR VF +L+ RN VSWT L+ G+  +G   ++   F+QMR 
Sbjct: 329 PYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRA 388

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGL-KYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
           E +  D      ++  CS+   +D  L +   S+S + G +        ++ +  +   L
Sbjct: 389 ELMTVDQFALATIISGCSNR--MDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNL 446

Query: 616 DEAVELIEGMPMEPTPIIWVALLN 639
             A  +   M  E   + W  +L 
Sbjct: 447 QNAESIFSSME-ERDIVSWTGMLT 469


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/725 (36%), Positives = 406/725 (56%), Gaps = 28/725 (3%)

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA--VICSSGFDSNV 170
           LRL     + FL       HP E+T   +LK   +  + + G  +HA  +I +     N+
Sbjct: 4   LRLLAPTHKPFLLKSSTVGHPLEHTIQ-LLKVSADTKNLKFGKMIHAHLIITNQATKDNI 62

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
              N+L+ +YA+CD +  AR LFD M +    ++VSW  ++A Y  +G     L LF  M
Sbjct: 63  VQVNSLINLYAKCDQIMVARILFDGMRKR---NVVSWGALMAGYFHNGLVLEVLRLFKTM 119

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTG 289
                ++ +       +S+C+  G    G QC G   ++  VF +  VK     NA++  
Sbjct: 120 ISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQY-VK-----NALICM 173

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YSR    + A +++     E   L+V +++ +I G  + G+  EAL+V  +M    +  +
Sbjct: 174 YSRRSDVKGAMSVW----YEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWD 229

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            VT V+    C+ +  L LG + HC    R+      +  D  V +A+IDMY KC ++  
Sbjct: 230 NVTYVTAFGLCSHLKDLRLGLQVHC----RMFRTGAEY--DSFVSSAIIDMYGKCGNILN 283

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +F+ +  KN  V +WT ++ +YSQNG   +AL  FP+M + D L+ PN +T +  L 
Sbjct: 284 ARKVFNRLQTKN--VVSWTAILAAYSQNGCFEEALNFFPEM-EVDGLL-PNEYTFAVLLN 339

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           +CA ++AL  G+ +H  + ++ +E  I  V N LI+MYS+SG I+ A  VF  +  R+ +
Sbjct: 340 SCAGISALGHGKLLHTRIKKSGFEDHI-IVGNALINMYSKSGSIEAAHKVFLEMICRDSI 398

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +W++++ G   HGLG +A   F +M      P  VTF+ +L AC+H G V +G  Y + +
Sbjct: 399 TWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQL 458

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
            K+ GI    EHY CIV LL +A RLDEA   ++  P++   + W  LL+ C +H N  L
Sbjct: 459 MKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGL 518

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
           G+  A  +L+++    G+Y LLSN+YA A RW  V +IR LM+   VKK PG SW++ + 
Sbjct: 519 GKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRN 578

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F    +THP+S +IYE +  L+  I+ MGYVP  +   HDV+DE+K + +  HSEK
Sbjct: 579 SIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEK 638

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+AYG++ T  G PIR+ KNLR+C DCHSA+  IS + N  II+RD+NRFH F +G C+
Sbjct: 639 LAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCS 698

Query: 830 CKGYW 834
           C  YW
Sbjct: 699 CADYW 703


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/549 (41%), Positives = 338/549 (61%), Gaps = 16/549 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V  N ++  Y++ GS E+A  +F+KM Q +     VTW+ +I+GY+Q     +AL  F
Sbjct: 94  DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF----VTWTTLISGYSQHDRPCDALLFF 149

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM   G  PN  TL S++   A+      G + H + +K           ++ V +AL+
Sbjct: 150 NQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK------CGFDSNVHVGSALL 203

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D+Y +   +D A+++FDA+  +N DV +W  +I  +++  G   AL LF  M +     +
Sbjct: 204 DLYTRYGLMDDAQLVFDALESRN-DV-SWNALIAGHARRSGTEKALELFQGMLRDG--FR 259

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F+ +    AC+    L  G+ +HAY++++  E L+ F  N L+DMY++SG I  AR 
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG-EKLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD L +R+VVSW SL+T Y  HG G +A W F++MR+ G+ P+ ++FL +L ACSHSG+
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D+G  Y++ M K+ GI   A HY  +VDLLGRA  L+ A+  IE MP+EPT  IW ALL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           N CR+H N ELG  AA  + EL+ +  G + +L NIYA+ GRW D AR+R  MK +GVKK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P CSWV+ +     F   D  HPQ ++I      ++ +IK +GYVP TS  +  VD +E
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEK+ALA+ +L T PG+ I I KN+R+CGDCH+AI   S ++  EII+RD+N
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 819 RFHHFKEGS 827
           RFHHFK+ S
Sbjct: 618 RFHHFKDAS 626



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 40/354 (11%)

Query: 38  KITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQR 92
           +  + LL++C   K L Q  ++H  I+     H  V  + L+  Y    +   A  + ++
Sbjct: 61  RFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEK 120

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           +    F    W  LI    +   P +A   F QM+R G+ P+E+T   V+KA        
Sbjct: 121 MPQRDFVT--WTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           CG  +H      GFDSNV V +AL+ +Y R   +  A+ +FD +      + VSWN ++A
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR---NDVSWNALIA 235

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------ 260
            +A+    E  L LF  M  D   +    S  +   AC+S G   +GK            
Sbjct: 236 GHARRSGTEKALELFQGMLRD-GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 294

Query: 261 --------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                         + G + +A+K+F+R+  +DVVSWN+++T Y++ G  ++A   F++M
Sbjct: 295 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEM 354

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
           R+  ++ N +++ +V+   +  G   E    +  M+  G+ P     VT+V LL
Sbjct: 355 RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLL 408


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/708 (37%), Positives = 396/708 (55%), Gaps = 37/708 (5%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           T   VLK C           VH      G + +VFV  AL+ +Y++C  +  AR LFD M
Sbjct: 185 TLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWM 244

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            +    D+V WN ++  Y Q G  +    LF+       ++ D  S+   L+ C   GT 
Sbjct: 245 RER---DVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS-GLRPDEFSVQLILNGCLWAGT- 299

Query: 257 SRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                   +E  K+V   + VK     DV   N++V  YS++G    A  +F  M+    
Sbjct: 300 ------DDLELGKQV-HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH--- 349

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL--VSLLSGCASVGALLL- 368
            L++++W+++I+  AQ     E++++F  +   GL+P+  TL  ++L +   + G L+L 
Sbjct: 350 -LDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLL 408

Query: 369 --GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             GK+ H + IK           DL V + ++DMY KC  +  A ++F+ I+  + DVA 
Sbjct: 409 DQGKQIHAHAIK------AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD-DVA- 460

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT MI     NG  + AL ++ +M Q    V P+ +T +  + A + + AL  GRQ+HA 
Sbjct: 461 WTSMISGCVDNGNEDQALRIYHRMRQSR--VMPDEYTFATLIKASSCVTALEQGRQLHAN 518

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           V++    +  PFV   L+DMY++ G+I+ A  +F  +  RN+  W +++ G   HG  ++
Sbjct: 519 VIKLDC-VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 577

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F  M+  G+ PD V+F+ +L ACSH+G+  +  +Y  SM  ++GI    EHY+C+V
Sbjct: 578 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 637

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           D LGRA  + EA ++IE MP + +  I  ALL  CRI  +VE G+  A RL  LE     
Sbjct: 638 DALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSA 697

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
           +Y LLSNIYA A RW DV   R +MK   VKK PG SW+  K     F V DR+HPQ+  
Sbjct: 698 AYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADI 757

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           IY+ +  +++ I+  GYVP T F L DV+DEEK   L+ HSEKLA+AYG+++T   T IR
Sbjct: 758 IYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIR 817

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + KNLR+CGDCH+AI +IS +   EI+LRD+NRFHHF++G C+C  YW
Sbjct: 818 VIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 157/520 (30%), Positives = 256/520 (49%), Gaps = 64/520 (12%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G   HA I  SG   + F+ N L+ MY++C +LS ARQ+FD   +    D+V+WN I+ A
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPER---DLVTWNAILGA 152

Query: 214 YAQS-----GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT-WSRGKQCGMMEE 267
           YA S     G+A+ GL LF  +   +      ++L   L  C + G  W           
Sbjct: 153 YAASVDSNDGNAQEGLHLFRLLRASLG-STTRMTLAPVLKLCLNSGCLW----------- 200

Query: 268 AKKVFERMKVKDVVSWNAMVTG-----YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           A +      +K  + W+  V+G     YS+ G   DA  LF  MR+     +VV W+ ++
Sbjct: 201 AAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER----DVVLWNMML 256

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC--ASVGALLLGKETHCYTIKRV 380
            GY Q G   EA  +F +    GL P+  ++  +L+GC  A    L LGK+ H   +K  
Sbjct: 257 KGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSG 316

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L  D S      V N+L++MY+K      AR +F+ +  K+ D+ +W  MI S +Q+   
Sbjct: 317 LDSDVS------VANSLVNMYSKMGCAYFAREVFNDM--KHLDLISWNSMISSCAQSSLE 368

Query: 441 NDALALFPQMFQQDKLVKPNAF-----TLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            +++ LF  +  +   +KP+ F     TL+ A  AC  L  L  G+QIHA+ ++  ++  
Sbjct: 369 EESVNLFIDLLHEG--LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 426

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  V + ++DMY + GD+  A +VF+ +   + V+WTS+++G   +G  D+A   + +MR
Sbjct: 427 L-HVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 485

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKY------FDSMSKEF-GISARAEHYACIVDL 608
           +  + PD  TF  L+ A S    ++QG +        D +S  F G S        +VD+
Sbjct: 486 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTS--------LVDM 537

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
             +   +++A  L + M +     +W A+L G   H N E
Sbjct: 538 YAKCGNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGNAE 576



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 200/459 (43%), Gaps = 86/459 (18%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSV 157
           V  WN +++  V+L L   AF+LF +  R G  PDE++   +L  C          G  V
Sbjct: 249 VVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQV 308

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H +   SG DS+V V N+L+ MY++     +AR++F++M      D++SWN+++++ AQS
Sbjct: 309 HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH---LDLISWNSMISSCAQS 365

Query: 218 GDAEGGLMLFARMTGDVKVQGD-----GVSLVNALSACASLGTWSRGKQ----------- 261
              E  + LF  +  +  ++ D      ++L  A  AC  L    +GKQ           
Sbjct: 366 SLEEESVNLFIDLLHE-GLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 424

Query: 262 ---------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                          CG M  A  VF  +   D V+W +M++G    G+ + A  ++ +M
Sbjct: 425 SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 484

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
           RQ  V                                    P+  T  +L+   + V AL
Sbjct: 485 RQSRVM-----------------------------------PDEYTFATLIKASSCVTAL 509

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G++ H   IK           D  V  +L+DMYAKC +++ A  +F  +  +N  +A 
Sbjct: 510 EQGRQLHANVIKL------DCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN--IAL 561

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  M+   +Q+G A +A+ LF  M  +   ++P+  +    L AC+  A L      + +
Sbjct: 562 WNAMLVGLAQHGNAEEAVNLFKSM--KSHGIEPDRVSFIGILSACSH-AGLTSEAYEYLH 618

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNL 523
            + N Y  + P + +  CL+D   R+G +  A  V + +
Sbjct: 619 SMPNDYG-IEPEIEHYSCLVDALGRAGLVQEADKVIETM 656



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 23/333 (6%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL    S   LLLGK TH   +     V GS  D  +  N L+ MY+KC S+  AR +FD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIV-----VSGSAGDHFLS-NNLLTMYSKCGSLSSARQVFD 136

Query: 416 AIAPKNRDVATWTVMIGSY-----SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
              P+ RD+ TW  ++G+Y     S +G A + L LF  +  +  L      TL+  L  
Sbjct: 137 T-TPE-RDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLL--RASLGSTTRMTLAPVLKL 192

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           C     L     +H Y ++   E  + FV+  L+++YS+ G +  AR++FD +++R+VV 
Sbjct: 193 CLNSGCLWAAEGVHGYAIKIGLEWDV-FVSGALVNIYSKCGRMRDARLLFDWMRERDVVL 251

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL-KYFDSM 589
           W  ++ GY   GL  +A   F +  + GL PD  +  ++L  C  +G  D  L K    +
Sbjct: 252 WNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGI 311

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
           + + G+ +       +V++  +      A E+   M      I W ++++ C   A   L
Sbjct: 312 AVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISSC---AQSSL 367

Query: 650 GELAANRLLEL--ESEKDGSYTLLSNIYANAGR 680
            E + N  ++L  E  K   +TL S   A A +
Sbjct: 368 EEESVNLFIDLLHEGLKPDHFTLASITLATAAK 400



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 31/218 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W ++I   V     D A R++ +M +    PDEYTF  ++KA   + +   G  +HA + 
Sbjct: 461 WTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI 520

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                S+ FV  +L+ MYA+C  +  A +LF +M    + +I  WN ++   AQ G+AE 
Sbjct: 521 KLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM---NVRNIALWNAMLVGLAQHGNAEE 577

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
            + LF  M     ++ D VS +  LSAC+  G  S   +                     
Sbjct: 578 AVNLFKSMKSH-GIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 636

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
                  G+++EA KV E M  K   S N  + G  RI
Sbjct: 637 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRI 674


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/748 (35%), Positives = 403/748 (53%), Gaps = 44/748 (5%)

Query: 99   SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
            ++F WN  +   +       A   F  ++R     D  T   +L A         G  +H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 159  AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            A++  S F   V V N+LM MY++   +  A + F  +  P + D++SWNT++++YAQ+ 
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPEL-DLISWNTMISSYAQNN 974

Query: 219  DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT---WSRGKQ-------CGMMEEA 268
                 +  F  +  D  ++ D  +L + L AC++      ++ G Q       CG+    
Sbjct: 975  LEMEAICTFRDLLRD-GLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI---- 1029

Query: 269  KKVFERMKVKDVVSWNAMVTGYSRIGSFEDA-FALFKKMRQENVKLNVVTWSAVIAGYAQ 327
                    + D     A++  YS+ G  ++A F L  K        ++ +W+A++ GY +
Sbjct: 1030 --------INDSFVSTALIDLYSKGGKMDEAEFLLHGKY-----DFDLASWNAIMFGYIK 1076

Query: 328  RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                 +AL+ F  M   G+  + +TL + +     +  L  GK+   Y IK   +     
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFN----- 1131

Query: 388  PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             +DL V + ++DMY KC  +  A  +F  I+    D   WT MI  Y +NG  + AL+++
Sbjct: 1132 -NDLWVSSGVLDMYIKCGDMPNALELFGEIS--RPDEVAWTTMISGYIENGDEDHALSVY 1188

Query: 448  PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
              M  +   V+P+ +T +  + A + L AL  G+QIHA V++  Y  L  FV   L+DMY
Sbjct: 1189 HLM--RVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS-LDHFVGTSLVDMY 1245

Query: 508  SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
             + G +  A  VF  +  R VV W +++ G   HG  D+A   F  M+  G+ PD VTF+
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFI 1305

Query: 568  VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
             +L ACSHSG+  +  KYFD+M K +GI+   EHY+C+VD LGRA R+ EA  +I  MP 
Sbjct: 1306 GVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPF 1365

Query: 628  EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
            + +  ++ ALL  CR   + E  +  A++LL L+     +Y LLSNIYA + +W DV   
Sbjct: 1366 KASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDA 1425

Query: 688  RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG-YVPQ 746
            R++MK   VKK PG SW+  K     F V DR+HPQ+  IYE +  L++RI+  G YVP 
Sbjct: 1426 RNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPD 1485

Query: 747  TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
            T F L DV++EEK   L+ HSEKLA+A+G+++T P   IR+ KNLR+CGDCHSAI  IS 
Sbjct: 1486 TDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISK 1545

Query: 807  IINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +   EI+LRD+NRFHHF+ G+C+C  YW
Sbjct: 1546 LTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 153/602 (25%), Positives = 254/602 (42%), Gaps = 93/602 (15%)

Query: 152  RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
            + G   HA I +SG   + ++ N L+ MY++C +L  ARQ+FD   +    D+V+WN+I+
Sbjct: 628  KLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFD---KSSDRDLVTWNSIL 684

Query: 212  AAYAQSGDAE-----GGLMLFA----------RMT-----------GDVK----VQGDGV 241
            AAYAQ  D+       G  LF           R+T           G V+    V G  V
Sbjct: 685  AAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV 744

Query: 242  SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA-- 299
             +   L    S    +   + G++ +A+ +F++M  +D V WN M+  Y    SF+D   
Sbjct: 745  KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE-NSFQDEAL 803

Query: 300  --FALF--------------------------KKMRQENVKL------------NVVTWS 319
              F+ F                          +K   E VK             N+  W+
Sbjct: 804  RFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 320  AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
              +  +   G    A+D F+ +    +  + VTLV +LS       L LG++ H   IK 
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK- 922

Query: 380  VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
                  S    + V N+L++MY+K   V  A   F  I     D+ +W  MI SY+QN  
Sbjct: 923  -----SSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPELDLISWNTMISSYAQNNL 975

Query: 440  ANDALALFPQMFQQDKLVKPNAFTLSCALMACA---RLAALRFGRQIHAYVLRNQYEMLI 496
              +A+  F  + +    +KP+ FTL+  L AC+          G Q+H Y ++    +  
Sbjct: 976  EMEAICTFRDLLRDG--LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI-IND 1032

Query: 497  PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             FV+  LID+YS+ G +D A  +       ++ SW ++M GY       KA   F  M +
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 557  EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
             G+  D +T    + A      + QG K   + + + G +      + ++D+  +   + 
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQG-KQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 617  EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
             A+EL  G    P  + W  +++G  I    E   L+   L+ +   +   YT  + I A
Sbjct: 1152 NALELF-GEISRPDEVAWTTMISGY-IENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 677  NA 678
            ++
Sbjct: 1210 SS 1211



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 139/551 (25%), Positives = 249/551 (45%), Gaps = 58/551 (10%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN +++  V     D A R F    R G+ PD                    S++H VI 
Sbjct: 786  WNVMLKAYVENSFQDEALRFFSAFHRSGFFPD-------------------FSNLHCVI- 825

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              G +S+V       A   +    +YA ++F   F  G  +I +WN  +  +  +G    
Sbjct: 826  -GGVNSDVSNNRKRHAEQVK----AYAMKMFP--FDQG-SNIFAWNKKLTEFLHAGQIVA 877

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +  F  +     +  D V+LV  LSA         G+Q   +     V +      V  
Sbjct: 878  AIDCFKTLLRST-IGHDSVTLVIILSAAVGADDLDLGEQIHAL-----VIKSSFAPVVPV 931

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             N+++  YS+ G    A    +K    + +L++++W+ +I+ YAQ     EA+  FR + 
Sbjct: 932  SNSLMNMYSKAGVVYAA----EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLL 987

Query: 343  FCGLEPNVVTLVSLLSGCASVGA---LLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
              GL+P+  TL S+L  C++        LG + H Y IK  +       +D  V  ALID
Sbjct: 988  RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI------INDSFVSTALID 1041

Query: 400  MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            +Y+K   +D A  +       + D+A+W  ++  Y ++  +  AL  F  M +    +  
Sbjct: 1042 LYSKGGKMDEAEFLLH--GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG--IPI 1097

Query: 460  NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            +  TL+ A+ A   L  L+ G+QI AY ++  +   + +V++ ++DMY + GD+  A  +
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL-WVSSGVLDMYIKCGDMPNALEL 1156

Query: 520  FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
            F  + + + V+WT++++GY  +G  D A   +  MR  G+ PD  TF  L+ A S    +
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 580  DQGLKYFDSMSKEFGISARAEHY--ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +QG +   ++ K   +    +H+    +VD+  +   + +A  +   M +    + W A+
Sbjct: 1217 EQGKQIHANVVK---LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKV-VFWNAM 1272

Query: 638  LNGCRIHANVE 648
            L G   H +V+
Sbjct: 1273 LLGLAQHGHVD 1283



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 35/298 (11%)

Query: 98   FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            F +  WNA++   ++      A   F  M   G   DE T    +KA G L + + G  +
Sbjct: 1062 FDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQI 1121

Query: 158  HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
             A     GF+++++V + ++ MY +C  +  A +LF E+ +P   D V+W T+++ Y ++
Sbjct: 1122 QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRP---DEVAWTTMISGYIEN 1178

Query: 218  GDAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------- 261
            GD +  L ++   R++G   VQ D  +    + A + L    +GKQ              
Sbjct: 1179 GDEDHALSVYHLMRVSG---VQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDH 1235

Query: 262  ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                        CG +++A +VF +M V+ VV WNAM+ G ++ G  ++A  LF+ M+  
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 310  NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGAL 366
             ++ + VT+  V++  +  G   EA   F  M +  G+ P +     L+      G +
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 16/202 (7%)

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L LGK  H   +       G  PD  +  N LI MY+KC S+  AR +FD     +RD+ 
Sbjct: 627 LKLGKRAHARIV-----TSGDLPDRYLT-NNLITMYSKCGSLCSARQVFDK--SSDRDLV 678

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG----- 480
           TW  ++ +Y+Q   A+ +     + F+   L++   F+++   +A      L  G     
Sbjct: 679 TWNSILAAYAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             +H Y ++  +E+ + FV+  L+++Y + G +  AR++FD + +R+ V W  ++  Y  
Sbjct: 737 ETVHGYAVKIGFELDL-FVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795

Query: 541 HGLGDKAHWAFDQMRKEGLAPD 562
           +   D+A   F    + G  PD
Sbjct: 796 NSFQDEALRFFSAFHRSGFFPD 817


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/748 (35%), Positives = 403/748 (53%), Gaps = 44/748 (5%)

Query: 99   SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
            ++F WN  +   +       A   F  ++R     D  T   +L A         G  +H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 159  AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            A++  S F   V V N+LM MY++   +  A + F  +  P + D++SWNT++++YAQ+ 
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPEL-DLISWNTMISSYAQNN 974

Query: 219  DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT---WSRGKQ-------CGMMEEA 268
                 +  F  +  D  ++ D  +L + L AC++      ++ G Q       CG+    
Sbjct: 975  LEMEAICTFRDLLRD-GLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI---- 1029

Query: 269  KKVFERMKVKDVVSWNAMVTGYSRIGSFEDA-FALFKKMRQENVKLNVVTWSAVIAGYAQ 327
                    + D     A++  YS+ G  ++A F L  K        ++ +W+A++ GY +
Sbjct: 1030 --------INDSFVSTALIDLYSKGGKMDEAEFLLHGKY-----DFDLASWNAIMFGYIK 1076

Query: 328  RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                 +AL+ F  M   G+  + +TL + +     +  L  GK+   Y IK   +     
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFN----- 1131

Query: 388  PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             +DL V + ++DMY KC  +  A  +F  I+    D   WT MI  Y +NG  + AL+++
Sbjct: 1132 -NDLWVSSGVLDMYIKCGDMPNALELFGEIS--RPDEVAWTTMISGYIENGDEDHALSVY 1188

Query: 448  PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
              M  +   V+P+ +T +  + A + L AL  G+QIHA V++  Y  L  FV   L+DMY
Sbjct: 1189 HLM--RVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS-LDHFVGTSLVDMY 1245

Query: 508  SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
             + G +  A  VF  +  R VV W +++ G   HG  D+A   F  M+  G+ PD VTF+
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFI 1305

Query: 568  VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
             +L ACSHSG+  +  KYFD+M K +GI+   EHY+C+VD LGRA R+ EA  +I  MP 
Sbjct: 1306 GVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPF 1365

Query: 628  EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
            + +  ++ ALL  CR   + E  +  A++LL L+     +Y LLSNIYA + +W DV   
Sbjct: 1366 KASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDA 1425

Query: 688  RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG-YVPQ 746
            R++MK   VKK PG SW+  K     F V DR+HPQ+  IYE +  L++RI+  G YVP 
Sbjct: 1426 RNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPD 1485

Query: 747  TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
            T F L DV++EEK   L+ HSEKLA+A+G+++T P   IR+ KNLR+CGDCHSAI  IS 
Sbjct: 1486 TDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISK 1545

Query: 807  IINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +   EI+LRD+NRFHHF+ G+C+C  YW
Sbjct: 1546 LTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 153/602 (25%), Positives = 254/602 (42%), Gaps = 93/602 (15%)

Query: 152  RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
            + G   HA I +SG   + ++ N L+ MY++C +L  ARQ+FD   +    D+V+WN+I+
Sbjct: 628  KLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFD---KSSDRDLVTWNSIL 684

Query: 212  AAYAQSGDAE-----GGLMLFA----------RMT-----------GDVK----VQGDGV 241
            AAYAQ  D+       G  LF           R+T           G V+    V G  V
Sbjct: 685  AAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV 744

Query: 242  SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA-- 299
             +   L    S    +   + G++ +A+ +F++M  +D V WN M+  Y    SF+D   
Sbjct: 745  KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE-NSFQDEAL 803

Query: 300  --FALF--------------------------KKMRQENVKL------------NVVTWS 319
              F+ F                          +K   E VK             N+  W+
Sbjct: 804  RFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 320  AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
              +  +   G    A+D F+ +    +  + VTLV +LS       L LG++ H   IK 
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK- 922

Query: 380  VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
                  S    + V N+L++MY+K   V  A   F  I     D+ +W  MI SY+QN  
Sbjct: 923  -----SSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPELDLISWNTMISSYAQNNL 975

Query: 440  ANDALALFPQMFQQDKLVKPNAFTLSCALMACA---RLAALRFGRQIHAYVLRNQYEMLI 496
              +A+  F  + +    +KP+ FTL+  L AC+          G Q+H Y ++    +  
Sbjct: 976  EMEAICTFRDLLRDG--LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI-IND 1032

Query: 497  PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             FV+  LID+YS+ G +D A  +       ++ SW ++M GY       KA   F  M +
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 557  EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
             G+  D +T    + A      + QG K   + + + G +      + ++D+  +   + 
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQG-KQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 617  EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
             A+EL  G    P  + W  +++G  I    E   L+   L+ +   +   YT  + I A
Sbjct: 1152 NALELF-GEISRPDEVAWTTMISGY-IENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 677  NA 678
            ++
Sbjct: 1210 SS 1211



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 139/551 (25%), Positives = 249/551 (45%), Gaps = 58/551 (10%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN +++  V     D A R F    R G+ PD                    S++H VI 
Sbjct: 786  WNVMLKAYVENSFQDEALRFFSAFHRSGFXPD-------------------FSNLHCVI- 825

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              G +S+V       A   +    +YA ++F   F  G  +I +WN  +  +  +G    
Sbjct: 826  -GGVNSDVSNNRKRHAEQVK----AYAMKMFP--FDQG-SNIFAWNKKLTEFLHAGQIVA 877

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +  F  +     +  D V+LV  LSA         G+Q   +     V +      V  
Sbjct: 878  AIDCFKTLLRST-IGHDSVTLVIILSAAVGADDLDLGEQIHAL-----VIKSSFAPVVPV 931

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             N+++  YS+ G    A    +K    + +L++++W+ +I+ YAQ     EA+  FR + 
Sbjct: 932  SNSLMNMYSKAGVVYAA----EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLL 987

Query: 343  FCGLEPNVVTLVSLLSGCASVGA---LLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
              GL+P+  TL S+L  C++        LG + H Y IK  +       +D  V  ALID
Sbjct: 988  RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI------INDSFVSTALID 1041

Query: 400  MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            +Y+K   +D A  +       + D+A+W  ++  Y ++  +  AL  F  M +    +  
Sbjct: 1042 LYSKGGKMDEAEFLLH--GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG--IPI 1097

Query: 460  NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            +  TL+ A+ A   L  L+ G+QI AY ++  +   + +V++ ++DMY + GD+  A  +
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL-WVSSGVLDMYIKCGDMPNALEL 1156

Query: 520  FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
            F  + + + V+WT++++GY  +G  D A   +  MR  G+ PD  TF  L+ A S    +
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 580  DQGLKYFDSMSKEFGISARAEHY--ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +QG +   ++ K   +    +H+    +VD+  +   + +A  +   M +    + W A+
Sbjct: 1217 EQGKQIHANVVK---LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKV-VFWNAM 1272

Query: 638  LNGCRIHANVE 648
            L G   H +V+
Sbjct: 1273 LLGLAQHGHVD 1283



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 35/298 (11%)

Query: 98   FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            F +  WNA++   ++      A   F  M   G   DE T    +KA G L + + G  +
Sbjct: 1062 FDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQI 1121

Query: 158  HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
             A     GF+++++V + ++ MY +C  +  A +LF E+ +P   D V+W T+++ Y ++
Sbjct: 1122 QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRP---DEVAWTTMISGYIEN 1178

Query: 218  GDAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------- 261
            GD +  L ++   R++G   VQ D  +    + A + L    +GKQ              
Sbjct: 1179 GDEDHALSVYHLMRVSG---VQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDH 1235

Query: 262  ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                        CG +++A +VF +M V+ VV WNAM+ G ++ G  ++A  LF+ M+  
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 310  NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGAL 366
             ++ + VT+  V++  +  G   EA   F  M +  G+ P +     L+      G +
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 16/202 (7%)

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L LGK  H   +       G  PD  +  N LI MY+KC S+  AR +FD     +RD+ 
Sbjct: 627 LKLGKRAHARIV-----TSGDLPDRYLT-NNLITMYSKCGSLCSARQVFDK--SSDRDLV 678

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG----- 480
           TW  ++ +Y+Q   A+ +     + F+   L++   F+++   +A      L  G     
Sbjct: 679 TWNSILAAYAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             +H Y ++  +E+ + FV+  L+++Y + G +  AR++FD + +R+ V W  ++  Y  
Sbjct: 737 ETVHGYAVKIGFELDL-FVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795

Query: 541 HGLGDKAHWAFDQMRKEGLAPD 562
           +   D+A   F    + G  PD
Sbjct: 796 NSFQDEALRFFSAFHRSGFXPD 817


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/756 (34%), Positives = 399/756 (52%), Gaps = 77/756 (10%)

Query: 138 FPFVLKAC---GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
           +   +K C   G    SR    +H  I  +      F+ N ++  YA   + +YAR++FD
Sbjct: 6   YSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFD 65

Query: 195 EMFQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLML 226
            + QP +                             D V+WN ++  Y+ SG     +  
Sbjct: 66  RIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------------- 261
           +  M  D       V+L+  L   +S G  S GKQ                         
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 262 -CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
             G + +AKKVF  +  ++ V +N+++ G    G  EDA  LF+ M +++V     +W+A
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV-----SWAA 240

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I G AQ G   EA++ FR+M+  GL+ +     S+L  C  +GA+  GK+ H   I+  
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT- 299

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                +  D + V +ALIDMY KCK +  A+ +FD +  KN  V +WT M+  Y Q G A
Sbjct: 300 -----NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN--VVSWTAMVVGYGQTGRA 352

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV- 499
            +A+ +F  M  Q   + P+ +TL  A+ ACA +++L  G Q H   + +    LI +V 
Sbjct: 353 EEAVKIFLDM--QRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG---LIHYVT 407

Query: 500 -ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
            +N L+ +Y + GDID +  +F+ +  R+ VSWT++++ Y   G   +    FD+M + G
Sbjct: 408 VSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHG 467

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           L PDGVT   ++ ACS +G+V++G +YF  M+ E+GI     HY+C++DL  R+ RL+EA
Sbjct: 468 LKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEA 527

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
           +  I GMP  P  I W  LL+ CR   N+E+G+ AA  L+EL+      YTLLS+IYA+ 
Sbjct: 528 MRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASK 587

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           G+W  VA++R  M+   VKK PG SW++ K    +F   D + P   +IY  L  L  +I
Sbjct: 588 GKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKI 647

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
              GY P TSF  HDV++  K  +L  HSE+LA+A+G++    G PIR+ KNLR+C DCH
Sbjct: 648 IDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCH 707

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +A   IS +   EI++RD+ RFH FK+G+C+C  +W
Sbjct: 708 NATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 225/531 (42%), Gaps = 112/531 (21%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WN LI       L   A + +  MMR    +    T   +LK          G  +H  +
Sbjct: 106 WNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQV 165

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFD--------------------------- 194
              GF+S + V + L+ MYA    +S A+++F                            
Sbjct: 166 IKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDAL 225

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACA 251
           ++F+    D VSW  ++   AQ+G A+  +  F  M    KVQG   D     + L AC 
Sbjct: 226 QLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM----KVQGLKMDQYPFGSVLPACG 281

Query: 252 SLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNA 285
            LG  + GKQ                          C  +  AK VF+RMK K+VVSW A
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           MV GY + G  E+A                                   + +F  MQ  G
Sbjct: 342 MVVGYGQTGRAEEA-----------------------------------VKIFLDMQRSG 366

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           ++P+  TL   +S CA+V +L  G + H   I   L         + V N+L+ +Y KC 
Sbjct: 367 IDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGL------IHYVTVSNSLVTLYGKCG 420

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +D +  +F+ +    RD  +WT M+ +Y+Q G A + + LF +M Q    +KP+  TL+
Sbjct: 421 DIDDSTRLFNEM--NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHG--LKPDGVTLT 476

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNL 523
             + AC+R   +  G Q +  ++ ++Y  ++P + +  C+ID++SRSG ++ A    + +
Sbjct: 477 GVISACSRAGLVEKG-QRYFKLMTSEYG-IVPSIGHYSCMIDLFSRSGRLEEAMRFINGM 534

Query: 524 K-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYA 572
               + + WT+L++     G  +   WA + + + +   P G T L  +YA
Sbjct: 535 PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA 585



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 175/385 (45%), Gaps = 70/385 (18%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           AL L + +     S   W A+I+   +  L   A   F +M  +G   D+Y F  VL AC
Sbjct: 224 ALQLFRGMEKDSVS---WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPAC 280

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
           G L +   G  +HA I  + F  +++V +AL+ MY +C  L YA+ +FD M Q    ++V
Sbjct: 281 GGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK---NVV 337

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---- 261
           SW  +V  Y Q+G AE  + +F  M     +  D  +L  A+SACA++ +   G Q    
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRS-GIDPDHYTLGQAISACANVSSLEEGSQFHGK 396

Query: 262 ----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                 CG ++++ ++F  M V+D VSW AMV+ Y++ G   + 
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVET 456

Query: 300 FALFKKMRQENVKLNVVTWSAVI-----AGYAQRGH----------------GHEA--LD 336
             LF KM Q  +K + VT + VI     AG  ++G                 GH +  +D
Sbjct: 457 IQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMID 516

Query: 337 VFRQ-------MQFCG---LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           +F +       M+F       P+ +   +LLS C + G L +GK    +  + ++ +D  
Sbjct: 517 LFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGK----WAAESLIELDPH 572

Query: 387 HPDDLMVINALIDMYAKCKSVDVAR 411
           HP    +++++     K  SV   R
Sbjct: 573 HPAGYTLLSSIYASKGKWDSVAQLR 597


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/734 (35%), Positives = 397/734 (54%), Gaps = 26/734 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA+I       +    F + L  MR G   PD  T   ++  C        GS +H++ 
Sbjct: 214 WNAMISMYSHEEVYSKCF-IVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLC 272

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            SSG   +V + NAL+ MY+    L  A  LF  M +    D++SWNT++++Y QS    
Sbjct: 273 VSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRR---DVISWNTMISSYVQSNSCV 329

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L    ++    +   + ++  +AL AC+S      G+    M     + +R     ++
Sbjct: 330 EALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAM-----ILQRSLQNVLL 384

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             N+++T YS+  S ED   +F+ M       +VV+ + +  GYA       A+ VF  M
Sbjct: 385 IGNSLLTMYSKCNSMEDTERVFESMPC----YDVVSCNVLTGGYAALEDVANAMRVFSWM 440

Query: 342 QFCGLEPNVVTLVSLLSGCASVGAL-LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +  G++PN +T+++L   C S+G L   G   H Y  +  L        D  + N+LI M
Sbjct: 441 RGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGL------LSDEYITNSLITM 494

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YA C  ++ +  +F  I   N+ V +W  +I +  ++G   +A+ LF  M  Q    K +
Sbjct: 495 YATCGDLESSTGIFSRI--NNKSVISWNAIIAANVRHGRGEEAIKLF--MDSQHAGNKLD 550

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            F L+  L + A LA+L  G Q+H   ++N  +     V N  +DMY + G +D      
Sbjct: 551 RFCLAECLSSSANLASLEEGMQLHGLSVKNGLD-CDSHVVNATMDMYGKCGKMDCMLKTL 609

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
            +   R    W +L++GY  +G   +A   F  M   G  PD VTF+ LL ACSH+G++D
Sbjct: 610 PDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLID 669

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G+ Y++SM+  FG+S   +H  CIVDLLGR  +  EA + I+ MP+ P  +IW +LL+ 
Sbjct: 670 KGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSS 729

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            R H N+++G  AA  LLEL+   D +Y LLSN+YA   RW DV ++RS MK   + KRP
Sbjct: 730 SRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRP 789

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
            CSW++ K   +TF +GDR+H  ++KIY  L  ++ +++ +GYV  TS ALHD D+E+K 
Sbjct: 790 ACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSALHDTDEEQKE 849

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             L+ HSEKLALAYG+L    G+ IRI KNLR+C DCH     +SM+ + EI+LRD  RF
Sbjct: 850 HNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHREIVLRDPYRF 909

Query: 821 HHFKEGSCTCKGYW 834
           H FK GSC+C  +W
Sbjct: 910 HQFKHGSCSCSDFW 923



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 226/486 (46%), Gaps = 27/486 (5%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSS 151
           P   S  W+ A +    R  L   AF L   M  R      +    ++ AC   G    +
Sbjct: 2   PHRTSSSWYTA-VSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
            CG+++HA+   +G   NV++  AL+ +Y     +  A++LF EM Q    ++VSW  I+
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQR---NVVSWTAIM 117

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
            A + +G  E  L+ + RM  +  V  +  +L   +S C +L     G Q         +
Sbjct: 118 VALSSNGCMEEALVAYRRMRKE-GVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGL 176

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
              + V      N+++T +  +   +DA  LF +M + +     ++W+A+I+ Y+     
Sbjct: 177 LTHVSVA-----NSLITMFGNLRRVQDAERLFDRMEERDR----ISWNAMISMYSHEEVY 227

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            +   V   M+   ++P+V TL SL+S CAS   + LG   H   +   L         +
Sbjct: 228 SKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHC------SV 281

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            +INAL++MY+    +D A  +F  ++   RDV +W  MI SY Q+    +AL    Q+ 
Sbjct: 282 PLINALVNMYSTAGKLDEAESLFRNMS--RRDVISWNTMISSYVQSNSCVEALETLGQLL 339

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           Q D+   PN+ T S AL AC+   AL  GR IHA +L+   + ++  + N L+ MYS+  
Sbjct: 340 QTDE-GPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVL-LIGNSLLTMYSKCN 397

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ++    VF+++   +VVS   L  GY        A   F  MR  G+ P+ +T + L  
Sbjct: 398 SMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQG 457

Query: 572 ACSHSG 577
            C   G
Sbjct: 458 TCKSLG 463



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 44/344 (12%)

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SW   V+G +R G    AF L + MR+ +V L+    ++++     RG        +++ 
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRG--------WQEG 59

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             CG   + +T  + L G   +G  LL    H Y         GS     +V+NA     
Sbjct: 60  AACGAAIHALTHRAGLMGNVYIGTALL----HLY---------GSRG---LVLNA----- 98

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
                    R+ ++      R+V +WT ++ + S NG   +AL  + +M ++  +   NA
Sbjct: 99  --------QRLFWEM---PQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANA 147

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
                +L  C  L     G Q+ A+V+ +     +  VAN LI M+     +  A  +FD
Sbjct: 148 LATVVSL--CGALEDEVAGLQVTAHVVVSGLLTHVS-VANSLITMFGNLRRVQDAERLFD 204

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +++R+ +SW ++++ Y    +  K       MR   + PD  T   L+  C+ S +V  
Sbjct: 205 RMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVAL 264

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           G     S+    G+         +V++   A +LDEA  L   M
Sbjct: 265 G-SGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNM 307



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 50  LTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRR 109
           +TQ  L+  + I  +L        I  Y +      +  +  RI+    SV  WNA+I  
Sbjct: 476 VTQTGLLSDEYITNSL--------ITMYATCGDLESSTGIFSRINNK--SVISWNAIIAA 525

Query: 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
            VR    + A +LF+     G   D +     L +   L S   G  +H +   +G D +
Sbjct: 526 NVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCD 585

Query: 170 VFVCNALMAMYARCDTLS-YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
             V NA M MY +C  +    + L D   +P  C    WNT+++ YA+ G  +     F 
Sbjct: 586 SHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQC----WNTLISGYARYGYFKEAEDTFK 641

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMV 287
            M   V  + D V+ V  LSAC+  G   +G     M+    +     V   +     +V
Sbjct: 642 HMVS-VGQKPDYVTFVALLSACSHAGLIDKG-----MDYYNSMAPTFGVSPGIKHCVCIV 695

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               R+G F +A     +M    V  N + W ++++        H+ LD+ R+
Sbjct: 696 DLLGRLGKFAEAEKFIDEMP---VLPNDLIWRSLLSS----SRTHKNLDIGRK 741



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 14/225 (6%)

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA---AL 477
           +R  ++W   +   ++ G  + A  L   M ++D  V  + F L+  + AC         
Sbjct: 3   HRTSSSWYTAVSGCARCGLESTAFTLLRVMRERD--VPLSGFALASLVTACEHRGWQEGA 60

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G  IHA   R    M   ++   L+ +Y   G +  A+ +F  + QRNVVSWT++M  
Sbjct: 61  ACGAAIHALTHRAGL-MGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVA 119

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
              +G  ++A  A+ +MRKEG+  +      ++  C        GL+    ++    +S 
Sbjct: 120 LSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQ----VTAHVVVSG 175

Query: 598 RAEHYAC---IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
              H +    ++ + G   R+ +A  L + M  E   I W A+++
Sbjct: 176 LLTHVSVANSLITMFGNLRRVQDAERLFDRME-ERDRISWNAMIS 219


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/685 (37%), Positives = 393/685 (57%), Gaps = 38/685 (5%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYA--RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +HA +  +G   + F  + ++A  +     +L YAR +F ++  P      + N+I+   
Sbjct: 7   IHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNP---TSYTCNSIIRGC 63

Query: 215 AQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
                 +  L+ +  M     VQG   D  +  +   +C +    S GKQ       K  
Sbjct: 64  TDKNLHQEALLFYQEMM----VQGLIPDRYTFPSLFKSCRN---SSEGKQI-HCHSTKLG 115

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F      D  + N ++  YS  G    A  +F KM  + V    V+W+ +I  +AQ    
Sbjct: 116 F----ASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTV----VSWATMIGVHAQWDQP 167

Query: 332 HEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
           +EA+ +F R M+   ++PN VTLV++L+ CA    L + K  H Y  +      G H   
Sbjct: 168 NEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGF---GRH--- 221

Query: 391 LMVINA-LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            +V+N  L+D+Y KC  V +AR +FD    KN  + +W +MI  + ++    +AL LF +
Sbjct: 222 -VVLNTVLMDVYCKCGCVQLARDLFDKAQEKN--LFSWNIMINGHVEDSNYEEALLLFRE 278

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M  Q K +K +  T++  L+AC  L AL  G+ +HAY+ + + ++ +  +   L+DMY++
Sbjct: 279 M--QTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVA-LGTALVDMYAK 335

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G I+TA  VF  + +++V++WT+L+ G  M G  + A   FD+M  +G+ PD +TF+ +
Sbjct: 336 CGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGV 395

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L ACSH+G VD+G+ +F+SMS  +GI    EHY  +VD+LGRA R+ EA ELI+ MPM P
Sbjct: 396 LAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAP 455

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
              +   LL  CRIH N+E  E AA +LLE++    G+Y LLSNIY ++ +W++  R R 
Sbjct: 456 DQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRE 515

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           LM   G++K PGCS ++       F  GD +H QS +I E+L  ++ ++K  GYVP  S 
Sbjct: 516 LMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSE 575

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
            L D+ +EEK   L  HSEKLA+A+G+L+T+ GTPIR+ KNLRIC DCHSA   IS + N
Sbjct: 576 VLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYN 635

Query: 810 HEIILRDSNRFHHFKEGSCTCKGYW 834
            EII+RD NRFHHFK+G+C+C+G+W
Sbjct: 636 REIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/506 (28%), Positives = 231/506 (45%), Gaps = 87/506 (17%)

Query: 50  LTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSP---ALSLLQRISPSPFSVFWWNA 105
           ++Q+  IH Q++   L   P  +  I A+ S         A  +  +I P+P S +  N+
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQI-PNPTS-YTCNS 58

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +IR      L   A   + +MM +G  PD YTFP + K+C    +S  G  +H      G
Sbjct: 59  IIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLG 115

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           F S+ +  N LM MY+ C  L  AR++FD+M       +VSW T++  +AQ       + 
Sbjct: 116 FASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDK---TVVSWATMIGVHAQWDQPNEAVR 172

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------------- 260
           LF RM     V+ + V+LVN L+ACA     +  K                         
Sbjct: 173 LFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVY 232

Query: 261 -QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
            +CG ++ A+ +F++ + K++ SWN M+ G+    ++E+A  LF++M+ +          
Sbjct: 233 CKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTK---------- 282

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
                                    G++ + VT+ SLL  C  +GAL LGK  H Y  K+
Sbjct: 283 -------------------------GIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQ 317

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            + V      D+ +  AL+DMYAKC S++ A  +F  +  K  DV TWT +I   +  G 
Sbjct: 318 RIDV------DVALGTALVDMYAKCGSIETAIQVFHEMPEK--DVMTWTALILGLAMCGQ 369

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           A +AL  F +M    K VKP+A T    L AC+    +  G   H   + + Y  + P +
Sbjct: 370 AENALQYFDEM--HIKGVKPDAITFVGVLAACSHAGFVDEGIS-HFNSMSDTYG-IQPTI 425

Query: 500 ANC--LIDMYSRSGDIDTARVVFDNL 523
            +   L+D+  R+G I  A  +  ++
Sbjct: 426 EHYGGLVDILGRAGRIAEAEELIKSM 451


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/523 (42%), Positives = 333/523 (63%), Gaps = 13/523 (2%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           +VV+W+ VIAG AQ G   EAL++ ++M    L P+  TL S+L        +  GKE H
Sbjct: 163 DVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIH 222

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y I+           D+ + ++LIDMYAKC  V+++   F  ++  NRD  +W  +I  
Sbjct: 223 GYAIRHGFD------KDVFIGSSLIDMYAKCTQVELSVCAFHLLS--NRDAISWNSIIAG 274

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
             QNG  +  L  F +M ++   VKP   + S  + ACA L AL  G+Q+HAY++R  ++
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEK--VKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFD 332

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAF 551
               F+A+ L+DMY++ G+I  AR +F+ ++   R++VSWT+++ G  MHG    A   F
Sbjct: 333 D-NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLF 391

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           ++M  +G+ P  V F+ +L ACSH+G+VD+G KYF+SM ++FG++   EHYA + DLLGR
Sbjct: 392 EEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGR 451

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A RL+EA + I  M  EPT  +W  LL  CR H N+EL E   N++L ++    G++ ++
Sbjct: 452 AGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIM 511

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNIY+ A RW+D A++R  M+ TG+KK P CSW++      TF  GD++HP   KI E L
Sbjct: 512 SNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEAL 571

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L+++++  GYV  T+  LHDVD+E K DLL  HSE+LA+A+GI++T  GT IR+ KN+
Sbjct: 572 NILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNI 631

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCH+AI F++ I+  EII+RD++RFHHFK GSC+C  YW
Sbjct: 632 RVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 195/463 (42%), Gaps = 100/463 (21%)

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD----- 184
           G  PD + FP +L+A           S+HA +   GF  +++  NALM MY++       
Sbjct: 71  GISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSP 130

Query: 185 -----------------TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
                             +   R+LFD M    + D+VSWNT++A  AQ+G  E  L + 
Sbjct: 131 LHEFPQARHNHNNKYSVKIDSVRKLFDRM---PVRDVVSWNTVIAGNAQNGMYEEALNMV 187

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------------- 261
             M G   ++ D  +L + L         ++GK+                          
Sbjct: 188 KEM-GKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAK 246

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           C  +E +   F  +  +D +SWN+++ G  + G F+     F++M +E VK         
Sbjct: 247 CTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVK--------- 297

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
                                     P  V+  S++  CA + AL LGK+ H Y I+  L
Sbjct: 298 --------------------------PMQVSFSSVIPACAHLTALNLGKQLHAYIIR--L 329

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             D    D+  + ++L+DMYAKC ++ +AR +F+ I   +RD+ +WT +I   + +G A 
Sbjct: 330 GFD----DNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHAL 385

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           DA++LF +M      VKP        L AC+    +  G +    + R+    + P + +
Sbjct: 386 DAVSLFEEMLVDG--VKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDF--GVAPGLEH 441

Query: 502 --CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
              + D+  R+G ++ A     N+ +    S W++L+     H
Sbjct: 442 YAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAH 484



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 160/354 (45%), Gaps = 35/354 (9%)

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           + W  +I  YA  G    +L  F  ++  G+ P+     SLL          L +  H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCK----------------------SVDVARVM 413
            I+      G H D L   NAL++MY+K                         +D  R +
Sbjct: 102 VIRL-----GFHFD-LYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKL 155

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +    RDV +W  +I   +QNG   +AL +  +M +++  ++P++FTLS  L     
Sbjct: 156 FDRMPV--RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKEN--LRPDSFTLSSILPIFTE 211

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
            A +  G++IH Y +R+ ++  + F+ + LIDMY++   ++ +   F  L  R+ +SW S
Sbjct: 212 HANVTKGKEIHGYAIRHGFDKDV-FIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNS 270

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ G   +G  D+    F +M KE + P  V+F  ++ AC+H   ++ G K   +     
Sbjct: 271 IIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLG-KQLHAYIIRL 329

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCRIHAN 646
           G        + ++D+  +   +  A  +   + M +   + W A++ GC +H +
Sbjct: 330 GFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGH 383



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 32/271 (11%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN +I    +  + + A  +  +M +    PD +T   +L    E  +   G  +H 
Sbjct: 164 VVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHG 223

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                GFD +VF+ ++L+ MYA+C  +  +   F  +      D +SWN+I+A   Q+G 
Sbjct: 224 YAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR---DAISWNSIIAGCVQNGR 280

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
            + GL  F RM  + KV+   VS  + + ACA L   + GKQ                  
Sbjct: 281 FDQGLGFFRRMLKE-KVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIAS 339

Query: 262 --------CGMMEEAKKVFERMKV--KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                   CG ++ A+ +F ++++  +D+VSW A++ G +  G   DA +LF++M  + V
Sbjct: 340 SLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGV 399

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           K   V + AV+   +  G   E    F  MQ
Sbjct: 400 KPCYVAFMAVLTACSHAGLVDEGWKYFNSMQ 430



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 25/235 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I   V+    D     F +M++    P + +F  V+ AC  L +   G  +HA I 
Sbjct: 268 WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYII 327

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--DIVSWNTIVAAYAQSGDA 220
             GFD N F+ ++L+ MYA+C  +  AR +F+++    +C  D+VSW  I+   A  G A
Sbjct: 328 RLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKI---EMCDRDMVSWTAIIMGCAMHGHA 384

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK---- 276
              + LF  M  D  V+   V+ +  L+AC+           G+++E  K F  M+    
Sbjct: 385 LDAVSLFEEMLVD-GVKPCYVAFMAVLTACS---------HAGLVDEGWKYFNSMQRDFG 434

Query: 277 -VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
               +  + A+     R G  E+A+     M +E        WS ++A  A R H
Sbjct: 435 VAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTG---SVWSTLLA--ACRAH 484


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/646 (39%), Positives = 377/646 (58%), Gaps = 45/646 (6%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N +++ +A    +S AR  FD   +    D VSWN ++AAY ++G  E    LF     +
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEK---DAVSWNGMLAAYVRNGRVEEARGLF-----N 186

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            + + D +S    +S            Q G M EA+++F+RM  +DVVSWN MV+GY+R 
Sbjct: 187 SRTEWDVISWNALMSGYV---------QWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 237

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   +A  LF      +V     TW+AV++GYAQ G   EA  VF  M     E N V+ 
Sbjct: 238 GDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSW 289

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            ++++  A +   ++ +    + +    +V           N ++  YA+   ++ A+ +
Sbjct: 290 NAMVA--AYIQRRMMDEAKELFNMMPCRNVAS--------WNTMLTGYAQAGMLEEAKAV 339

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +  K  D  +W  M+ +YSQ G + + L LF +M +  + V  +AF  +C L  CA 
Sbjct: 340 FDTMPQK--DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF--ACVLSTCAD 395

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +AAL  G Q+H  ++R  Y +   FV N L+ MY + G+++ AR  F+ +++R+VVSW +
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGC-FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNT 454

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ GY  HG G +A   FD MR     PD +T + +L ACSHSG+V++G+ YF SM  +F
Sbjct: 455 MIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 514

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           G++A+ EHY C++DLLGRA RL EA +L++ MP EP   +W ALL   RIH N ELG  A
Sbjct: 515 GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 574

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A ++ ELE E  G Y LLSNIYA++G+W+D  ++R +M+  GVKK PG SW++ +    T
Sbjct: 575 AEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHT 634

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  GD  HP+ +KIY  L  L  R+K  GYV  T   LHDV++EEK  +L  HSEKLA+A
Sbjct: 635 FSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVA 694

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
           YGIL   PG PIR+ KNLR+CGDCH+A  F + I   E++L+ S R
Sbjct: 695 YGILNIPPGRPIRVIKNLRVCGDCHNA--FKAWI---ELMLKVSGR 735



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 211/437 (48%), Gaps = 60/437 (13%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD--------- 219
           +V   NALM+ Y +   +S AR+LFD M  PG  D+VSWN +V+ YA+ GD         
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRM--PGR-DVVSWNIMVSGYARRGDMVEARRLFD 248

Query: 220 -----------------AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
                            A+ G++  AR   D   + + VS  NA+ A           Q 
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW-NAMVAAYI--------QR 299

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
            MM+EAK++F  M  ++V SWN M+TGY++ G  E+A A+F  M Q+    + V+W+A++
Sbjct: 300 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAML 355

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A Y+Q G   E L +F +M  CG   N      +LS CA + AL  G + H   I+    
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V         V NAL+ MY KC +++ AR  F+ +  + RDV +W  MI  Y+++G   +
Sbjct: 416 V------GCFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKE 467

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVAN 501
           AL +F  M  +    KP+  TL   L AC+    +  G   + Y + + + +   P    
Sbjct: 468 ALEIFDMM--RTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHHDFGVTAKPEHYT 524

Query: 502 CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           C+ID+  R+G +  A  +  ++  + +   W +L+    +H   +    A +++ +  L 
Sbjct: 525 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LE 582

Query: 561 PDGVTFLVLL---YACS 574
           P+     VLL   YA S
Sbjct: 583 PENAGMYVLLSNIYASS 599



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 23/261 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +    +   +LF++M R G   +   F  VL  C ++ +  CG  +H  + 
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 410

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G+    FV NAL+AMY +C  +  AR  F+EM +    D+VSWNT++A YA+ G  + 
Sbjct: 411 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER---DVVSWNTMIAGYARHGFGKE 467

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M      + D ++LV  L+AC+           G++E+    F  M     V+
Sbjct: 468 ALEIFDMMR-TTSTKPDDITLVGVLAACS---------HSGLVEKGISYFYSMHHDFGVT 517

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  M+    R G   +A  L K M  E    +   W A++   A R H +  L  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP---DSTMWGALLG--ASRIHRNPELGR 572

Query: 338 FRQMQFCGLEPNVVTLVSLLS 358
               +   LEP    +  LLS
Sbjct: 573 SAAEKIFELEPENAGMYVLLS 593



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 197/470 (41%), Gaps = 71/470 (15%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM-RQENVKLNVVTWS 319
           + G + +A+++F  M  +   ++NAM+ GYS  G    A +LF+ + R +N   N +  +
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI-- 377
             ++       G     +F +M       + VT   ++S  A+ G + L +  H + +  
Sbjct: 110 LAVSSSLADARG-----LFDEMPV----RDSVTYNVMISSHANHGLVSLAR--HYFDLAP 158

Query: 378 -KRVLSVDG-------------------SHPD-DLMVINALIDMYAKCKSVDVARVMFDA 416
            K  +S +G                   S  + D++  NAL+  Y +   +  AR +FD 
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +    RDV +W +M+  Y++ G   +A  LF      D     + FT +  +   A+   
Sbjct: 219 M--PGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPVRDVFTWTAVVSGYAQNGM 270

Query: 477 LRFGRQI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           L   R++  A   RN          N ++  Y +   +D A+ +F+ +  RNV SW +++
Sbjct: 271 LEEARRVFDAMPERNAVSW------NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TGY   G+ ++A   FD M ++    D V++  +L A S  G  ++ L+ F  M +  G 
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGR-CGE 379

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG----- 650
                 +AC++        L+  ++L          +I      GC +  N  L      
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQL-------HGRLIRAGYGVGCFV-GNALLAMYFKC 431

Query: 651 ---ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
              E A N   E+E     S+  +   YA  G  K+   I  +M+ T  K
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 55/230 (23%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEM---------------FQPGIC--------- 202
           + N    NA++A Y +   +  A++LF+ M                Q G+          
Sbjct: 283 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 203 ----DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               D VSW  ++AAY+Q G +E  L LF  M G      +  +    LS CA +     
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM-GRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 259 GKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           G Q                          CG ME+A+  FE M+ +DVVSWN M+ GY+R
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            G  ++A  +F  MR  + K + +T   V+A  +  G   + +  F  M 
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 511


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/808 (33%), Positives = 438/808 (54%), Gaps = 43/808 (5%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           LL++C   ++L +   IH   +  NL     +  +H+++ Y   ++P  A +    +   
Sbjct: 49  LLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQR 108

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
             +++ W  L+             R   +M + G  PD  TF   L +CG+  S R G  
Sbjct: 109 --NLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIR 166

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H ++  S  + +  V NAL+ MY +C +LS+A+++F +M +    +++SW+ +  A+A 
Sbjct: 167 IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR--NVISWSIMAGAHAL 224

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---QCGMMEEAKKVFE 273
            G+    L  F R    + ++    ++V  LSAC+S      G+    C  +      FE
Sbjct: 225 HGNVWEALRHF-RFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSG----FE 279

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                +++  NA++T Y R G+ E+A  +F  M  +    +VV+W+ +++ Y     G +
Sbjct: 280 ----SELLVANAVMTMYGRCGAVEEARKVFDAM--DEALRDVVSWNIMLSAYVHNDRGKD 333

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A+ ++++MQ   L  + VT VSLLS C+S   + LG+  H    K++  V+     +++V
Sbjct: 334 AIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLH----KQI--VNDELEKNVIV 384

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            NAL+ MYAKC S   AR +FD +  + R + +WT +I +Y +     +A  LF QM + 
Sbjct: 385 GNALVSMYAKCGSHTEARAVFDKM--EQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 442

Query: 454 DK-----LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +K      VKP+A      L ACA ++AL  G+ +               V   ++++Y 
Sbjct: 443 EKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSS-DKAVGTAVVNLYG 501

Query: 509 RSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
           + G+I+  R +FD +  R +V  W +++  Y   G   +A   F +M  EG+ PD  +F+
Sbjct: 502 KCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFV 561

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEF-GISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
            +L ACSH+G+ DQG  YF SM+ E+  ++   +H+ C+ DLLGR  RL EA E +E +P
Sbjct: 562 SILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLP 621

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
           ++P  + W +LL  CR H +++  +  AN+LL LE      Y  LSNIYA   +W  VA+
Sbjct: 622 VKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAK 681

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R  M   GVKK  G S ++  +    F  GD  HP++++I E LA L  ++K  GYVP 
Sbjct: 682 VRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPD 741

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           T   LH VD++EK  LLF HSE+LA+A G+++T  GTP+R+TKNLR+C DCH+A   IS 
Sbjct: 742 TKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISK 801

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I   +I++RD  RFH FK+G C+C+ YW
Sbjct: 802 IAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP---FVANCLIDMYSR 509
           + + V+    T +  L  CAR  AL  GR+IH+  +++    L+P    + N ++ MY+ 
Sbjct: 35  EKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHN---LLPGNLILGNHIVSMYAH 91

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
                 A+  FD L+QRN+ SWT L+  + + G   +   A ++MR++G+ PD VTF+  
Sbjct: 92  CDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITA 151

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L +C     +  G++    M  +  +    +    ++++  +   L  A  +   M    
Sbjct: 152 LGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR 210

Query: 630 TPIIWVALLNGCRIHANV--ELGELAANRLLELESEKDGSYTLLS 672
             I W  +     +H NV   L       LL +++ K    T+LS
Sbjct: 211 NVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILS 255


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/649 (37%), Positives = 384/649 (59%), Gaps = 25/649 (3%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           ++YA + F E+ +P   DI+ WN I+  Y Q    +  + ++  M    +V  +  + + 
Sbjct: 35  VNYAHKAFREVSEP---DILLWNAIIKGYTQKNIVDAPIRMYMDMQIS-QVHPNCFTFLY 90

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            L AC        GKQ        + F+     +V   N++V+ Y++ G    A  +F K
Sbjct: 91  VLKACGGTSVEGIGKQI-----HGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDK 145

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           +    V    V+W+++I+GY Q G   EAL+VF++M+ C ++P+ + LVS+++   +V  
Sbjct: 146 LHDRTV----VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVED 201

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK  H    K  L  +   PD   ++ +L  MYAK   V+VAR  F+ +   N  + 
Sbjct: 202 LGQGKSIHGLVTKLGLEFE---PD---IVISLTTMYAKRGLVEVARFFFNRMEKPN--LI 253

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  MI  Y+ NG   +A+ LF +M  ++  ++ ++ T+  A++A A++ +L   R +  
Sbjct: 254 LWNAMISGYANNGYGEEAIKLFREMITKN--IRVDSITMRSAVLASAQVGSLELARWLDG 311

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y+ +++Y     FV   LIDMY++ G I  AR VFD +  ++VV W+ ++ GYG+HG G 
Sbjct: 312 YISKSEYRD-DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 370

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   +++M++ G+ P+  TF+ LL AC +SG+V +G + F  M  + GI    +HY+C+
Sbjct: 371 EAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCV 429

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA  L++A + I  MP++P   +W ALL+ C+IH  V LGE+AA +L  L+    
Sbjct: 430 VDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNT 489

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G Y  LSN+YA+A  W  VA +R +M   G+ K  G S ++      TF VGDR+HP+S+
Sbjct: 490 GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSK 549

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +I+E L  L +R+KA GYVP     LHD++ EE  + L  HSE+LA+AYGI++TAPGT +
Sbjct: 550 EIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTL 609

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RITKNLR C +CHSAI  IS +++ EII+RD+ RFHHFK+G C+C  +W
Sbjct: 610 RITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 222/475 (46%), Gaps = 89/475 (18%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +  WNA+I+   +  + D   R+++ M     HP+ +TF +VLKACG       G  +H 
Sbjct: 50  ILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHG 109

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                GF SNVFV N+L++MYA+   +SYAR +FD++       +VSW +I++ Y Q+GD
Sbjct: 110 QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR---TVVSWTSIISGYVQNGD 166

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------------- 262
               L +F  M     V+ D ++LV+ ++A  ++    +GK                   
Sbjct: 167 PMEALNVFKEMR-QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI 225

Query: 263 ---------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                    G++E A+  F RM+  +++ WNAM++GY+  G  E+A  LF++M  +N+++
Sbjct: 226 SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRV 285

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + +T  + +   AQ                                   VG+L L +   
Sbjct: 286 DSITMRSAVLASAQ-----------------------------------VGSLELARWLD 310

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y  K        + DD  V   LIDMYAKC S+ +AR +FD +A K  DV  W+VMI  
Sbjct: 311 GYISK------SEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADK--DVVLWSVMIMG 362

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI------HAYV 487
           Y  +G   +A+ L+ +M Q    V PN  T    L AC     ++ G ++      H   
Sbjct: 363 YGLHGHGQEAICLYNEMKQAG--VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 420

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
             +Q+        +C++D+  R+G ++ A     ++  +  VS W +L++   +H
Sbjct: 421 PHHQH-------YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 468



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 145/332 (43%), Gaps = 41/332 (12%)

Query: 45  RQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           +Q    T  Y     + VQN        L++ Y      S A  +  ++     +V  W 
Sbjct: 105 KQIHGQTFKYGFGSNVFVQN-------SLVSMYAKFGQISYARIVFDKLHDR--TVVSWT 155

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ++I   V+   P  A  +F +M +    PD      V+ A   +     G S+H ++   
Sbjct: 156 SIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKL 215

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G +    +  +L  MYA+   +  AR  F+ M +P   +++ WN +++ YA +G  E  +
Sbjct: 216 GLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKP---NLILWNAMISGYANNGYGEEAI 272

Query: 225 MLFARM-TGDVKVQGDGVSLVNALSACASLGT-----WSRG------------------- 259
            LF  M T +++V  D +++ +A+ A A +G+     W  G                   
Sbjct: 273 KLFREMITKNIRV--DSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 330

Query: 260 --KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG +  A+ VF+R+  KDVV W+ M+ GY   G  ++A  L+ +M+Q  V  N  T
Sbjct: 331 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 390

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           +  ++      G   E  ++F  M   G+EP+
Sbjct: 391 FIGLLTACKNSGLVKEGWELFHLMPDHGIEPH 422


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/649 (37%), Positives = 384/649 (59%), Gaps = 25/649 (3%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           ++YA + F E+ +P   DI+ WN I+  Y Q    +  + ++  M    +V  +  + + 
Sbjct: 50  VNYAHKAFREVSEP---DILLWNAIIKGYTQKNIVDAPIRMYMDMQIS-QVHPNCFTFLY 105

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            L AC        GKQ        + F+     +V   N++V+ Y++ G    A  +F K
Sbjct: 106 VLKACGGTSVEGIGKQI-----HGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDK 160

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           +    V    V+W+++I+GY Q G   EAL+VF++M+ C ++P+ + LVS+++   +V  
Sbjct: 161 LHDRTV----VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVED 216

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  GK  H    K  L  +   PD   ++ +L  MYAK   V+VAR  F+ +   N  + 
Sbjct: 217 LGQGKSIHGLVTKLGLEFE---PD---IVISLTTMYAKRGLVEVARFFFNRMEKPN--LI 268

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  MI  Y+ NG   +A+ LF +M  ++  ++ ++ T+  A++A A++ +L   R +  
Sbjct: 269 LWNAMISGYANNGYGEEAIKLFREMITKN--IRVDSITMRSAVLASAQVGSLELARWLDG 326

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y+ +++Y     FV   LIDMY++ G I  AR VFD +  ++VV W+ ++ GYG+HG G 
Sbjct: 327 YISKSEYRD-DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 385

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   +++M++ G+ P+  TF+ LL AC +SG+V +G + F  M  + GI    +HY+C+
Sbjct: 386 EAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCV 444

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA  L++A + I  MP++P   +W ALL+ C+IH  V LGE+AA +L  L+    
Sbjct: 445 VDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNT 504

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G Y  LSN+YA+A  W  VA +R +M   G+ K  G S ++      TF VGDR+HP+S+
Sbjct: 505 GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSK 564

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +I+E L  L +R+KA GYVP     LHD++ EE  + L  HSE+LA+AYGI++TAPGT +
Sbjct: 565 EIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTL 624

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RITKNLR C +CHSAI  IS +++ EII+RD+ RFHHFK+G C+C  +W
Sbjct: 625 RITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 222/475 (46%), Gaps = 89/475 (18%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +  WNA+I+   +  + D   R+++ M     HP+ +TF +VLKACG       G  +H 
Sbjct: 65  ILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHG 124

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                GF SNVFV N+L++MYA+   +SYAR +FD++       +VSW +I++ Y Q+GD
Sbjct: 125 QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR---TVVSWTSIISGYVQNGD 181

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------------- 262
               L +F  M     V+ D ++LV+ ++A  ++    +GK                   
Sbjct: 182 PMEALNVFKEMR-QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI 240

Query: 263 ---------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                    G++E A+  F RM+  +++ WNAM++GY+  G  E+A  LF++M  +N+++
Sbjct: 241 SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRV 300

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + +T  + +   AQ                                   VG+L L +   
Sbjct: 301 DSITMRSAVLASAQ-----------------------------------VGSLELARWLD 325

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y  K        + DD  V   LIDMYAKC S+ +AR +FD +A K  DV  W+VMI  
Sbjct: 326 GYISK------SEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADK--DVVLWSVMIMG 377

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI------HAYV 487
           Y  +G   +A+ L+ +M Q    V PN  T    L AC     ++ G ++      H   
Sbjct: 378 YGLHGHGQEAICLYNEMKQAG--VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 435

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
             +Q+        +C++D+  R+G ++ A     ++  +  VS W +L++   +H
Sbjct: 436 PHHQH-------YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 483



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 145/332 (43%), Gaps = 41/332 (12%)

Query: 45  RQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           +Q    T  Y     + VQN        L++ Y      S A  +  ++     +V  W 
Sbjct: 120 KQIHGQTFKYGFGSNVFVQN-------SLVSMYAKFGQISYARIVFDKLHDR--TVVSWT 170

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ++I   V+   P  A  +F +M +    PD      V+ A   +     G S+H ++   
Sbjct: 171 SIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKL 230

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G +    +  +L  MYA+   +  AR  F+ M +P   +++ WN +++ YA +G  E  +
Sbjct: 231 GLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKP---NLILWNAMISGYANNGYGEEAI 287

Query: 225 MLFARM-TGDVKVQGDGVSLVNALSACASLGT-----WSRG------------------- 259
            LF  M T +++V  D +++ +A+ A A +G+     W  G                   
Sbjct: 288 KLFREMITKNIRV--DSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 345

Query: 260 --KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG +  A+ VF+R+  KDVV W+ M+ GY   G  ++A  L+ +M+Q  V  N  T
Sbjct: 346 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 405

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           +  ++      G   E  ++F  M   G+EP+
Sbjct: 406 FIGLLTACKNSGLVKEGWELFHLMPDHGIEPH 437


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 274/773 (35%), Positives = 430/773 (55%), Gaps = 37/773 (4%)

Query: 71   SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR- 129
            S L++ +    +   A ++ Q++S    +V   N LI   VR +  + A  LF++M    
Sbjct: 323  SALVSGFAKAGSIGYAKNIFQKMSYR--NVVSLNGLIIGLVRQKRGEEAVELFMEMKDSV 380

Query: 130  GWHPDEYTFPFVLKACGEL----PSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCD 184
              +P+ Y    +L A  E        R GS VHA +  SG  ++ + + N L+ MYA+C 
Sbjct: 381  ELNPNSYMI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 185  TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
             ++ A  +F  M      D V+WN+++    Q+      +  F  M    ++     +++
Sbjct: 439  AINDACVVFRLMDNK---DSVTWNSMITGLDQNKQFLEAVKTFQEMR-RTELYPSNFTMI 494

Query: 245  NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
            +ALS+CASLG  S G+Q  +  E  K+   +   DV   NA++  Y   G  ++    F 
Sbjct: 495  SALSSCASLGWISVGEQ--LHCEGLKLGLDL---DVSVSNALLALYGECGYVKECQKAFS 549

Query: 305  KMRQENVKLNVVTWSAVIAGYAQRGHGH-EALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
             M    +  + V+W+++I   A       EA++ F  M   G +PN VT +++L+  +S+
Sbjct: 550  LM----LDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSL 605

Query: 364  GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
                LGK+ H   +KR ++ D +      + NAL+  Y KC  +     +F  ++ + +D
Sbjct: 606  SLHELGKQIHALVLKRNVAADTA------IENALLACYGKCGDMGYCENIFSRMSDR-QD 658

Query: 424  VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
              +W  MI  Y  N     A+ +   M Q+ +  + + FT +  L ACA +A L  G ++
Sbjct: 659  EVSWNSMISGYIHNELLPKAMDMVWFMMQKGQ--RLDGFTFATVLSACATVATLERGMEV 716

Query: 484  HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
            H   +R   E  I  + + L+DMY++ G ID A   F+ +  RN+ SW S+++GY  HG 
Sbjct: 717  HGCSVRACLESDI-VIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGH 775

Query: 544  GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
            G K+   F QM+ +G  PD VTF+ +L ACSH+G+V++G  +FDSMS+ +G++ R EH++
Sbjct: 776  GTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFS 835

Query: 604  CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CRIHA-NVELGELAANRLLELE 661
            C+VDLLGR   L++  + +  MP++P  +IW  +L   CR +  N  LG  AA  LLE+E
Sbjct: 836  CMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEME 895

Query: 662  SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
                 +Y LLSN+YA+ G+W DVA+ R  M+   VKK  GCSWV  K+G   F  GD++H
Sbjct: 896  PTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSH 955

Query: 722  PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
            P+   IYE L  L  +++  GY+P+T FAL+D++ E K +LL  HSEK+A+A+ +LT   
Sbjct: 956  PEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPS 1014

Query: 782  GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              PIRI KNLR+CGDCHSA  +IS I+  +I+LRDSNRFHHF+ G C+C  +W
Sbjct: 1015 KMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 146/560 (26%), Positives = 269/560 (48%), Gaps = 55/560 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS--RCGSSVHAV 160
           W+ LI    R R+P+ A  LF +M+  G+ P+ Y F  V++AC E      + G  +H +
Sbjct: 142 WSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGL 201

Query: 161 ICSSGFDSNVFVCNALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +  + + ++V   N L++MY      + YAR+ FD ++     ++VS N++++ Y Q GD
Sbjct: 202 MSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPR---NLVSLNSMISVYCQRGD 258

Query: 220 AEGGLMLFARMTGDVKVQGDGV--------SLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           A     +F+ M  +  V GDG+        SL++A  + A+ G         ++E+    
Sbjct: 259 AVSAFDIFSTMQKE--VMGDGLKPNEYTFGSLISATCSLANSGLV-------LLEQLLTR 309

Query: 272 FERMK-VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
            E+   + D+   +A+V+G+++ GS   A  +F+KM       NVV+ + +I G  ++  
Sbjct: 310 VEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYR----NVVSLNGLIIGLVRQKR 365

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK----ETHCYTIKRVLSVDGS 386
           G EA+++F +M+   +E N  + + +L+       L  GK    E H + I+      G 
Sbjct: 366 GEEAVELFMEMK-DSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIR-----SGL 419

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
               + + N LI+MYAKC +++ A V+F  +   N+D  TW  MI    QN    +A+  
Sbjct: 420 LNAQIAIGNGLINMYAKCGAINDACVVFRLM--DNKDSVTWNSMITGLDQNKQFLEAVKT 477

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F +M + +  + P+ FT+  AL +CA L  +  G Q+H   L+   ++ +  V+N L+ +
Sbjct: 478 FQEMRRTE--LYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVS-VSNALLAL 534

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD------KAHWAFDQMRKEGLA 560
           Y   G +   +  F  +   + VSW SL+       L D      +A  +F  M + G  
Sbjct: 535 YGECGYVKECQKAFSLMLDYDHVSWNSLIG-----ALADSEPSMLEAVESFLVMMRAGWD 589

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           P+ VTF+ +L A S   + + G K   ++  +  ++A       ++   G+   +     
Sbjct: 590 PNRVTFITILAAVSSLSLHELG-KQIHALVLKRNVAADTAIENALLACYGKCGDMGYCEN 648

Query: 621 LIEGMPMEPTPIIWVALLNG 640
           +   M      + W ++++G
Sbjct: 649 IFSRMSDRQDEVSWNSMISG 668



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 218/448 (48%), Gaps = 43/448 (9%)

Query: 153 CGS----SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
           CGS     +H  +  +GF +++F+CN L+ +YAR   L   R++FDEM    + ++VSW+
Sbjct: 87  CGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEM---PLRNLVSWS 143

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV--SLVNALSACASLGTWSRGKQCGMME 266
            +++ Y ++        LF +M  D  +       S++ A   C   G     +  G+M 
Sbjct: 144 CLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMS 203

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
           + +       V DV + N +++ Y   +G  + A   F  +       N+V+ +++I+ Y
Sbjct: 204 KTQ------YVNDVTASNVLISMYGNALGMVDYARRAFDSIWPR----NLVSLNSMISVY 253

Query: 326 AQRGHGHEALDVFRQMQF----CGLEPNVVTLVSLLSGCASV---GALLLGKETHCYTIK 378
            QRG    A D+F  MQ      GL+PN  T  SL+S   S+   G +LL +      + 
Sbjct: 254 CQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQ-----LLT 308

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
           RV      H  DL V +AL+  +AK  S+  A+ +F  ++ +N  V+   ++IG   Q  
Sbjct: 309 RVEKSGFLH--DLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNV-VSLNGLIIGLVRQKR 365

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL----RFGRQIHAYVLRNQYEM 494
           G  +A+ LF +M    +L  PN++ +   L A      L    R G ++HA+++R+    
Sbjct: 366 G-EEAVELFMEMKDSVEL-NPNSYMI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLN 421

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
               + N LI+MY++ G I+ A VVF  +  ++ V+W S++TG   +    +A   F +M
Sbjct: 422 AQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEM 481

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           R+  L P   T +  L +C+  G +  G
Sbjct: 482 RRTELYPSNFTMISALSSCASLGWISVG 509



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 3/106 (2%)

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
             ++H  + +N +   + F+ N LI++Y+R GD+ + R VFD +  RN+VSW+ L++GY 
Sbjct: 92  AEELHLQLFKNGFVNDL-FLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
            + + ++A   F +M  +G  P+   F  ++ AC   G  + GLK+
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECG--EYGLKF 194


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/673 (38%), Positives = 385/673 (57%), Gaps = 28/673 (4%)

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G+  N F+CN L+ +Y +CD    A  +F  +      ++ SW  ++AA+A++ D +   
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSK---NVFSWTMMLAAFAENRDFDRCW 61

Query: 225 MLFARMTGDVKVQGD-GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW 283
           + F  M       G+ G+S+   LSAC      + G+   +      + E   V+     
Sbjct: 62  LFFRGMLLQGINPGEVGISIF--LSACTDAREITIGRSIQLAILGTGIEEESIVQ----- 114

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
            A+V+ Y ++G   DA ++F +M   +V    V WSA++A YA+ GH  EAL +FRQM  
Sbjct: 115 TALVSLYGKLGHCTDAASVFLRMSHRDV----VAWSAMVAAYARNGHPREALGLFRQMDL 170

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ PN VTLVS L  CAS+G L  G   H    +RV    G     ++V  AL+++Y K
Sbjct: 171 DGVAPNKVTLVSGLDACASLGDLRSGALMH----QRV-EAQGIQSG-VVVGTALVNLYGK 224

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  ++ A   F  I  KN  V  W+ +  +Y++N    DA+ +  +M  +   + PN+ T
Sbjct: 225 CGRIEAAAEAFGQIVEKN--VVAWSAISAAYARNDRNRDAIRVLHRMDLEG--LAPNSTT 280

Query: 464 LSCALMACARLAALRFGRQIHA--YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
               L ACA +AAL+ GR+IH   +VL    E  + +V   L++MYS+ G++  A  +FD
Sbjct: 281 FVSVLDACAAIAALKQGRRIHERIHVLGGGLESDV-YVLTALVNMYSKCGNLALAGNMFD 339

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +   ++V W SL+     HG  +KA   F++MR EGL P  +TF  +L+ACSH+GM+DQ
Sbjct: 340 KIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQ 399

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G K+F S   + GI   AEH+ C+VDLLGRA  + ++ +L+  MP EP P+ W+A L  C
Sbjct: 400 GRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGAC 459

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R + N++    AA  L +L+  K   Y LLSN+YA AGRW DVAR+R  M+     K  G
Sbjct: 460 RTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAG 519

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW++ K+    F  GD  HP+  +I+  L  L + +KA GYVP T   LHDV  E K  
Sbjct: 520 RSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKET 579

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLA+A+ +LTT  G+PIR+ KNLR+C DCH+A  FIS ++N EI++RD NRFH
Sbjct: 580 MVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFH 639

Query: 822 HFKEGSCTCKGYW 834
            F+ G+C+C  YW
Sbjct: 640 RFQNGACSCGDYW 652



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/483 (28%), Positives = 227/483 (46%), Gaps = 24/483 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y   +    AL++   I     +VF W  ++      R  D  +  F  M+ +G +
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSK--NVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGIN 73

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P E      L AC +      G S+   I  +G +    V  AL+++Y +    + A  +
Sbjct: 74  PGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASV 133

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M      D+V+W+ +VAAYA++G     L LF +M  D  V  + V+LV+ L ACAS
Sbjct: 134 FLRMSHR---DVVAWSAMVAAYARNGHPREALGLFRQMDLD-GVAPNKVTLVSGLDACAS 189

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           LG    G       EA+ +        VV   A+V  Y + G  E A   F ++    V+
Sbjct: 190 LGDLRSGALMHQRVEAQGI-----QSGVVVGTALVNLYGKCGRIEAAAEAFGQI----VE 240

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            NVV WSA+ A YA+     +A+ V  +M   GL PN  T VS+L  CA++ AL  G+  
Sbjct: 241 KNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRI 300

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H    +R+  + G    D+ V+ AL++MY+KC ++ +A  MFD IA  + D+  W  +I 
Sbjct: 301 H----ERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA--HLDLVLWNSLIA 354

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           + +Q+G    AL LF +M  +   ++P   T +  L AC+    L  GR+     + +  
Sbjct: 355 TNAQHGQTEKALELFERMRLEG--LQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHG 412

Query: 493 EMLIPFVANCLIDMYSRSGDI-DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
                    C++D+  R+G I D+  ++     + + V+W + +     +   D A WA 
Sbjct: 413 IFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAA 472

Query: 552 DQM 554
           + +
Sbjct: 473 ENL 475


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 280/849 (32%), Positives = 431/849 (50%), Gaps = 96/849 (11%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L   + L +  +    +I  N+       ++  Y    + S A  L  R+      V  W
Sbjct: 55  LSDARRLLRADIKEPNVITHNI-------MMNGYAKQGSLSDAEELFDRMPRR--DVASW 105

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           N L+    + R   +    F+ M R G   P+ +TF  V+K+CG L        +  +  
Sbjct: 106 NTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFW 165

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C------------------- 202
              F  +  V  AL+ M+ RC  + +A +LF ++ +P I C                   
Sbjct: 166 KFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 225

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   D+VSWN ++AA +QSG     L L   M     V+ D  +  ++L+ACA L 
Sbjct: 226 YFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK-GVRLDSTTYTSSLTACARLF 284

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
           +   GKQ        KV   +   D    +A++  Y++ GSF++A  +F  ++  N    
Sbjct: 285 SLGWGKQL-----HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS--- 336

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V+W+ +I G  Q     +++++F QM+   +  +   L +L+SGC +   L LG++ H 
Sbjct: 337 -VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHS 395

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------- 421
             +K        H   ++V N+LI +YAKC  +  A  +F +++ ++             
Sbjct: 396 LCLK------SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 422 ----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
                           R+  TW  M+G+Y Q+G   D L ++  M  Q K V P+  T  
Sbjct: 450 IGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ-KDVTPDWVTYV 508

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
                CA + A + G QI  + ++    + +  VAN  I MYS+ G I  A+ +FD L  
Sbjct: 509 TLFRGCADIGANKLGDQIIGHTVKAGLILNVS-VANAAITMYSKCGRISEAQKLFDLLNG 567

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           ++VVSW +++TGY  HG+G +A   FD M  +G  PD ++++ +L  CSHSG+V +G  Y
Sbjct: 568 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 627

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           FD M++  GIS   EH++C+VDLLGRA  L EA +LI+ MPM+PT  +W ALL+ C+IH 
Sbjct: 628 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N EL ELAA  + EL+S   GSY LL+ IY++AG+  D A++R LM+  G+KK PG SW+
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 747

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + +     F   D +HPQ   I   L  L+++I  +GYV   S          + ++   
Sbjct: 748 EVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTES---------PRSEI--H 796

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+GI++     PI I KNLRICGDCH+ I  IS + + E ++RD  RFHHFK 
Sbjct: 797 HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKS 856

Query: 826 GSCTCKGYW 834
           GSC+C  YW
Sbjct: 857 GSCSCGDYW 865



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 156/615 (25%), Positives = 279/615 (45%), Gaps = 82/615 (13%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD-EMFQPG 200
           L++CG   +     ++H  + + G  S VF+ N L+  Y  C  LS AR+L   ++ +P 
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 201 IC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           +                             D+ SWNT+++ Y Q+     GL  F  M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMME 266
                 +  +    + +C +LG      Q                          CG ++
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
            A ++F +++   +   N+M+ GY+++   + A   F+ M +     +VV+W+ +IA  +
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER----DVVSWNMMIAALS 246

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q G   EAL +  +M   G+  +  T  S L+ CA + +L  GK+ H   I+ +  +D  
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP- 305

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
                 V +ALI++YAKC S   A+ +F+++  ++R+  +WTV+IG   Q    + ++ L
Sbjct: 306 -----YVASALIELYAKCGSFKEAKRVFNSL--QDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F QM  + +L+  + F L+  +  C     L  GRQ+H+  L++ +   I  V+N LI +
Sbjct: 359 FNQM--RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAI-VVSNSLISL 415

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y++ GD+  A  VF ++ +R++VSWTS++T Y   G   KA   FD M       + +T+
Sbjct: 416 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAITW 471

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR--ANRLDEAVELIEG 624
             +L A    G  + GLK + +M  +  ++     Y  +        AN+L +    I G
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ---IIG 528

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELA-ANRLLELESEKD-GSYTLLSNIYANAGRWK 682
             ++   I+ V++ N   I    + G ++ A +L +L + KD  S+  +   Y+  G  K
Sbjct: 529 HTVKAGLILNVSVANAA-ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGK 587

Query: 683 DVARIRSLMKHTGVK 697
             A+    M   G K
Sbjct: 588 QAAKTFDDMLSKGAK 602


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/562 (41%), Positives = 357/562 (63%), Gaps = 24/562 (4%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA---L 335
           D+V  N+++  Y++ GS E A  +F +M  ++V    VTW+++I GY+Q G+   A   L
Sbjct: 125 DLVIKNSILFMYAKCGSLEIARQVFDEMCVKDV----VTWTSMITGYSQDGYASSATTAL 180

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH--CYTIKRVLSVDGSHPDDLMV 393
            +F +M   GL PN   L SL+  C  +G+ + GK+ H  C+             +++ V
Sbjct: 181 VLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKY--------GFQENVFV 232

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            ++L+DMYA+C  +  +R++FD +  KN    +W  +I  +++ G   +AL LF +M  Q
Sbjct: 233 GSSLVDMYARCGELRESRLVFDELESKNE--VSWNALISGFARKGEGEEALGLFVKM--Q 288

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
            +      FT S  L + +   +L  G+ +HA+++++  + L+ +V N L+ MY++SG+I
Sbjct: 289 REGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG-KKLVGYVGNTLLHMYAKSGNI 347

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYA 572
             A+ VFD L + +VVS  S++ GY  HGLG +A   F++M     + P+ +TFL +L A
Sbjct: 348 CDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTA 407

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSH+G++D+GL YF+ M K++G+  +  HY  +VDL GRA  LD+A   IE MP+EP   
Sbjct: 408 CSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNAT 466

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           IW ALL   ++H N E+G  AA ++LEL+    G++TLLSNIYA+AG+WKDVA++R  MK
Sbjct: 467 IWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMK 526

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
            +G+KK P CSWV+ +     F   D +HPQ  K+YE+   L Q+IK +GYVP TS    
Sbjct: 527 DSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHV 586

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
            VD +EK   L  HSEKLALA+ +L T PG+ IRI KN+R+CGDCHSAI ++S+++  EI
Sbjct: 587 FVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREI 646

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           I+RD+NRFHHF++GSC+C+ YW
Sbjct: 647 IVRDTNRFHHFRDGSCSCRDYW 668



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/494 (26%), Positives = 224/494 (45%), Gaps = 93/494 (18%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD   +  +LK C  L   + G  VH  + +S F +++ + N+++ MYA+C +L  ARQ+
Sbjct: 89  PDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQV 148

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSG---DAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           FDEM    + D+V+W +++  Y+Q G    A   L+LF  M  D  ++ +  +L + +  
Sbjct: 149 FDEMC---VKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRD-GLRPNEFALSSLVKC 204

Query: 250 CASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSW 283
           C  LG+   GKQ                          CG + E++ VF+ ++ K+ VSW
Sbjct: 205 CGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSW 264

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+++G++R G  E+A  LF KM++E       T+SA                       
Sbjct: 265 NALISGFARKGEGEEALGLFVKMQREGFGATEFTYSA----------------------- 301

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
                       LL   ++ G+L  GK  H + +K    + G       V N L+ MYAK
Sbjct: 302 ------------LLCSSSTTGSLEQGKWLHAHMMKSGKKLVG------YVGNTLLHMYAK 343

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
             ++  A+ +FD +     DV +   M+  Y+Q+G   +A+ LF +M    + ++PN  T
Sbjct: 344 SGNICDAKKVFDRLV--KVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVE-IEPNDIT 400

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFD 521
               L AC+    L  G  ++ + L  +Y  L P +++   ++D++ R+G +D A+   +
Sbjct: 401 FLSVLTACSHAGLLDEG--LYYFELMKKYG-LEPKLSHYTTVVDLFGRAGLLDQAKSFIE 457

Query: 522 NLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ-MRKEGLAPDGVTFLVLLYACS----- 574
            +  + N   W +L+    MH   +   +A  + +  +   P   T L  +YA +     
Sbjct: 458 EMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKD 517

Query: 575 ----HSGMVDQGLK 584
                  M D GLK
Sbjct: 518 VAKVRKEMKDSGLK 531



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 177/360 (49%), Gaps = 32/360 (8%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A  LFL+M+R G  P+E+    ++K CG L S   G  +H      GF  NVFV ++L+ 
Sbjct: 179 ALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVD 238

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYARC  L  +R +FDE+      + VSWN +++ +A+ G+ E  L LF +M    + +G
Sbjct: 239 MYARCGELRESRLVFDELESK---NEVSWNALISGFARKGEGEEALGLFVKM----QREG 291

Query: 239 DGVSLVN---ALSACASLGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            G +       L + ++ G+  +GK     MM+  KK+   +        N ++  Y++ 
Sbjct: 292 FGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVG-------NTLLHMYAKS 344

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVT 352
           G+  DA  +F ++    VK++VV+ ++++ GYAQ G G EA+++F +M  +  +EPN +T
Sbjct: 345 GNICDAKKVFDRL----VKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDIT 400

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
            +S+L+ C+  G L  G        K  L    SH         ++D++ +   +D A+ 
Sbjct: 401 FLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSH------YTTVVDLFGRAGLLDQAKS 454

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
             + + P   +   W  ++G+   +           ++ + D    P A TL   + A A
Sbjct: 455 FIEEM-PIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFY-PGAHTLLSNIYASA 512



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 126/267 (47%), Gaps = 22/267 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNALI    R    + A  LF++M R G+   E+T+  +L +     S   G  +HA + 
Sbjct: 264 WNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMM 323

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SG     +V N L+ MYA+   +  A+++FD + +    D+VS N+++  YAQ G  + 
Sbjct: 324 KSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVK---VDVVSCNSMLIGYAQHGLGKE 380

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV----K 278
            + LF  M   V+++ + ++ ++ L+AC+           G+++E    FE MK      
Sbjct: 381 AVELFEEMMLWVEIEPNDITFLSVLTACS---------HAGLLDEGLYYFELMKKYGLEP 431

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            +  +  +V  + R G  + A +  ++M    ++ N   W A++   A + H +  +  +
Sbjct: 432 KLSHYTTVVDLFGRAGLLDQAKSFIEEMP---IEPNATIWGALLG--ASKMHKNTEMGAY 486

Query: 339 RQMQFCGLEPNVVTLVSLLSGC-ASVG 364
              +   L+P      +LLS   AS G
Sbjct: 487 AAQKVLELDPFYPGAHTLLSNIYASAG 513


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/585 (40%), Positives = 341/585 (58%), Gaps = 72/585 (12%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +V SWN+++   +R G   +A   F  MR+                              
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRK------------------------------ 69

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
                  L+PN  T    +  C+++  L  G++ H   +     + G  P DL V +AL+
Sbjct: 70  -----LSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQAL-----IFGFEP-DLFVSSALV 118

Query: 399 DMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVATWTV 429
           DMY+KC  +  AR +FD I+ +N                             RDV +W  
Sbjct: 119 DMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNS 178

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I  Y+QNG + +++ +F +M  +D  +  NA TLS  L+ACA   + R G+ IH  V++
Sbjct: 179 IIAVYAQNGMSTESMEIFHRMV-KDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIK 237

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
              E  + FV   +IDMY + G ++ AR  FD ++++NV SW++++ GYGMHG   +A  
Sbjct: 238 MGLESNV-FVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALE 296

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            F +M   G+ P+ +TF+ +L ACSH+G++++G  +F +MS EF +    EHY C+VDLL
Sbjct: 297 VFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLL 356

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
           GRA  L EA +LI+GM + P  ++W ALL  CR+H NV+LGE++A +L EL+ +  G Y 
Sbjct: 357 GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYV 416

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           LLSNIYA+AGRW+DV R+R LMK++G+ K PG S V  K     F VGDR HPQ +KIYE
Sbjct: 417 LLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYE 476

Query: 730 ILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITK 789
            L  L  +++ +GYVP  +  LHDV  EEK  +L  HSEKLA+A+GI+ T PGT I I K
Sbjct: 477 YLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIK 536

Query: 790 NLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           NLR+CGDCH+AI FIS I++ EI++RDS RFHHF++G C+C  YW
Sbjct: 537 NLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 199/462 (43%), Gaps = 72/462 (15%)

Query: 62  VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR 121
           + N T V  +     Y    + +P L+ L        +VF WN++I    R      A R
Sbjct: 3   ISNSTSVVITFSWKIYRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALR 62

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
            F  M +    P+  TFP  +K+C  L     G   H      GF+ ++FV +AL+ MY+
Sbjct: 63  AFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYS 122

Query: 182 RCDTLSYARQLFDEMFQPGIC----------------------------DIVSWNTIVAA 213
           +C  L  AR LFDE+    I                             D++SWN+I+A 
Sbjct: 123 KCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAV 182

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------- 260
           YAQ+G +   + +F RM  D ++  + V+L   L ACA  G+   GK             
Sbjct: 183 YAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES 242

Query: 261 -------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                        +CG +E A+K F+RM+ K+V SW+AMV GY   G  ++A  +F +M 
Sbjct: 243 NVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMN 302

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGAL 366
              VK N +T+ +V+A  +  G   E    F+ M     +EP V        GC      
Sbjct: 303 MAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY-----GCM---VD 354

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV----ARVMFDAIAPKNR 422
           LLG+  +      ++      P D +V  AL+      K+VD+    AR +F+ + PKN 
Sbjct: 355 LLGRAGYLKEAFDLIKGMKLRP-DFVVWGALLGACRMHKNVDLGEISARKLFE-LDPKN- 411

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
               + V++ +   + G  + +     + +   LVKP  F+L
Sbjct: 412 --CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSL 451


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 279/849 (32%), Positives = 431/849 (50%), Gaps = 96/849 (11%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L   + L +  +    +I  N+       ++  Y    + S A  L  R+      V  W
Sbjct: 55  LSDARRLLRADIKEPNVITHNI-------MMNGYAKQGSLSDAEELFDRMPRR--DVASW 105

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           N L+    + R   +    F+ M R G   P+ +TF  V+K+CG L        +  +  
Sbjct: 106 NTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFW 165

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C------------------- 202
              F  +  V  AL+ M+ RC  + +A +LF ++ +P I C                   
Sbjct: 166 KFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 225

Query: 203 --------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
                   D+VSWN ++AA +QSG     L L   M     V+ D  +  ++L+ACA L 
Sbjct: 226 YFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK-GVRLDSTTYTSSLTACARLF 284

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
           +   GKQ        KV   +   D    +A++  Y++ GSF++A  +F  ++  N    
Sbjct: 285 SLGWGKQL-----HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS--- 336

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            V+W+ +I G  Q     +++++F QM+   +  +   L +L+SGC +   L LG++ H 
Sbjct: 337 -VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHS 395

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------- 421
             +K        H   ++V N+LI +YAKC  +  A  +F +++ ++             
Sbjct: 396 LCLK------SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 422 ----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
                           R+  TW  M+G+Y Q+G   D L ++  M  Q K V P+  T  
Sbjct: 450 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ-KDVTPDWVTYV 508

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
                CA + A + G QI  + ++    + +  VAN  I MYS+ G I  A+ +FD L  
Sbjct: 509 TLFRGCADIGANKLGDQIIGHTVKAGLILNVS-VANAAITMYSKCGRISEAQKLFDLLNG 567

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           ++VVSW +++TGY  HG+G +A   FD M  +G  PD ++++ +L  CSHSG+V +G  Y
Sbjct: 568 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 627

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           FD M++  GIS   EH++C+VDLLGRA  L EA +LI+ MPM+PT  +W ALL+ C+IH 
Sbjct: 628 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N EL ELAA  + EL+S   GSY LL+ IY++AG+  D A++R LM+  G+KK PG SW+
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 747

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + +     F   D +HPQ   I   +  L+++I  +GYV   S          + ++   
Sbjct: 748 EVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTES---------PRSEI--H 796

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+GI++     PI I KNLRICGDCH+ I  IS + + E ++RD  RFHHFK 
Sbjct: 797 HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKS 856

Query: 826 GSCTCKGYW 834
           GSC+C  YW
Sbjct: 857 GSCSCGDYW 865



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 156/615 (25%), Positives = 279/615 (45%), Gaps = 82/615 (13%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD-EMFQPG 200
           L++CG   +     ++H  + + G  S VF+ N L+  Y  C  LS AR+L   ++ +P 
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70

Query: 201 IC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           +                             D+ SWNT+++ Y Q+     GL  F  M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMME 266
                 +  +    + +C +LG      Q                          CG ++
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
            A ++F +++   +   N+M+ GY+++   + A   F+ M +     +VV+W+ +IA  +
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER----DVVSWNMMIAALS 246

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q G   EAL +  +M   G+  +  T  S L+ CA + +L  GK+ H   I+ +  +D  
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP- 305

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
                 V +ALI++YAKC S   A+ +F+++  ++R+  +WTV+IG   Q    + ++ L
Sbjct: 306 -----YVASALIELYAKCGSFKEAKRVFNSL--QDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F QM  + +L+  + F L+  +  C     L  GRQ+H+  L++ +   I  V+N LI +
Sbjct: 359 FNQM--RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAI-VVSNSLISL 415

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y++ GD+  A  VF ++ +R++VSWTS++T Y   G   KA   FD M       + +T+
Sbjct: 416 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITW 471

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR--ANRLDEAVELIEG 624
             +L A    G  + GLK + +M  +  ++     Y  +        AN+L +    I G
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ---IIG 528

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELA-ANRLLELESEKD-GSYTLLSNIYANAGRWK 682
             ++   I+ V++ N   I    + G ++ A +L +L + KD  S+  +   Y+  G  K
Sbjct: 529 HTVKAGLILNVSVANAA-ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGK 587

Query: 683 DVARIRSLMKHTGVK 697
             A+    M   G K
Sbjct: 588 QAAKTFDDMLSKGAK 602


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/680 (37%), Positives = 395/680 (58%), Gaps = 38/680 (5%)

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           GF  ++ + N L+ MY +C  L  A  +FD M +    ++VSW  ++  + Q+G+    L
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKR---NVVSWTALMCGHIQNGNPLESL 58

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----CGMMEEAKKVFERMKVKDV 280
           +LF++M G   V+ +  +    L AC  L     G+Q    C      K  F+ + V   
Sbjct: 59  LLFSKM-GLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDIC-----VKTGFDMVNVVG- 111

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              N+++  YS+ G   +A  +F+ M   N+    ++W+A+IAGY   G   +AL +F++
Sbjct: 112 ---NSIIDMYSKCGRINEAACMFEVMPVRNL----ISWNAMIAGYTVAGFCEKALVLFQK 164

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR--VLSVDGSHPDDLMVINALI 398
           MQ  G   +  T  S L  C+ +GA+  G + H + I    + SV+ +      V  ALI
Sbjct: 165 MQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTA------VAGALI 218

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D+Y KC  + +AR +F  I  K+  V +WT +I  Y+Q G   +++ LF Q+  ++  ++
Sbjct: 219 DLYVKCGKLFMARRVFSHIEEKH--VISWTALILGYAQEGNLAESMELFRQL--RESSIQ 274

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            + F LS  +   A  A ++ G+Q+HA+ ++    + I  V N ++DMY + G I+ A  
Sbjct: 275 VDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDIS-VCNSILDMYLKCGMINEAER 333

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F  +  RNV+SWT ++TGYG HGLG +A   FD+M+ +   PD VT+L +L  CSHSG+
Sbjct: 334 LFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGL 393

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G +YF  +    GI AR EHYAC+VDLLGRA RL EA  L++ MP+E    IW  LL
Sbjct: 394 VEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLL 453

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           + CR+H ++ELG+     LL L+SE   +Y ++SNIYA+AG WK+  RIR L+K   +KK
Sbjct: 454 SACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKK 513

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK-AMGYVPQTSFALHDVDDE 757
             G SWV+  +    F+ GD THP ++KI+EIL  + +R+K  +GYV    +ALHDV++E
Sbjct: 514 EAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEE 573

Query: 758 EKGDLLFEHSEKLALAYGILTTA---PGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
            K D L  HSEKLA+   ++          IR+ KNLR+CGDCH  I  +S I+    ++
Sbjct: 574 SKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVV 633

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD+NRFH F++G C+C+ YW
Sbjct: 634 RDANRFHRFEDGLCSCRDYW 653



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 226/477 (47%), Gaps = 86/477 (18%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   ++   P  +  LF +M   G  P+++TF   LKACG L     G  +H
Sbjct: 37  NVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIH 96

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +   +GFD    V N+++ MY++C  ++ A  +F+ M  P + +++SWN ++A Y  +G
Sbjct: 97  DICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVM--P-VRNLISWNAMIAGYTVAG 153

Query: 219 DAEGGLMLFARMTGDVKVQG--DGVSLVNALSACASLGTWSRGKQ--------------- 261
             E  L+LF +M    +V G  D  +  + L AC+ LG    G Q               
Sbjct: 154 FCEKALVLFQKMQ---EVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVN 210

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG +  A++VF  ++ K V+SW A++ GY++ G+  ++  LF+++R+
Sbjct: 211 TAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRE 270

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +++++    S+++  +A           F  +Q                          
Sbjct: 271 SSIQVDGFILSSMMGVFAD----------FALVQ-------------------------Q 295

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK+ H + IK    VD S      V N+++DMY KC  ++ A  +F  +  +N  V +WT
Sbjct: 296 GKQMHAFAIKVPSGVDIS------VCNSILDMYLKCGMINEAERLFSEMPARN--VISWT 347

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           VMI  Y ++G   +A+ LF +M Q D   +P+  T    L+ C+    +  G++  + + 
Sbjct: 348 VMITGYGKHGLGKEAIRLFDEM-QLDS-TEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLC 405

Query: 489 RNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
              Y  +   V +  C++D+  R+G +  A+ + D++  + NV  W +L++   +HG
Sbjct: 406 --SYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHG 460


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/584 (41%), Positives = 342/584 (58%), Gaps = 47/584 (8%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA---LDVFRQMQ 342
           MV  Y+  G  + A  +F ++   +  L    ++++I  Y + G        L+ + +M 
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLL----YNSIIRAYTRHGXXXXXXXXLEAYARMH 173

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           F GL  +  TL  +L  CA +  + +G+  H   ++  + ++G    D  V  +LIDMY 
Sbjct: 174 FLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR--VGLEG----DFYVGASLIDMYV 227

Query: 403 KCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGS 433
           KC  +  AR +FD +  ++                             R++ +WT MI  
Sbjct: 228 KCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 287

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+QNG A  AL LF +M Q    +KPN  T+   L ACA+ AAL  GR+IH +   N   
Sbjct: 288 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFA--NGIG 345

Query: 494 M-LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHGLGDKAHWA 550
           + L   V   L  MY++   +  AR  FD + Q  +N+++W +++T Y  HG G +A   
Sbjct: 346 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 405

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F+ M + G+ PD VTF+ LL  CSHSG++D GL +F+ M     +  R EHYAC+VDLLG
Sbjct: 406 FENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLG 465

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA RL EA ELI  MPM+  P +W ALL  CR H N+E+ ELAA RL  LE +  G+Y L
Sbjct: 466 RAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVL 525

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSN+YA AG W++V ++R+L+K+ G+KK PGCSW++    +  F   D++HPQ+++IY+ 
Sbjct: 526 LSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKF 585

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L ++IK  GY+P TSF LHD+ +EEK   L  HSEKLA+A+G+L T PG  +R+TKN
Sbjct: 586 LEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKN 645

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LRICGDCH+A  FIS I   EII+RD NRFH FK+GSC+C  YW
Sbjct: 646 LRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 215/459 (46%), Gaps = 59/459 (12%)

Query: 120 FRLFLQ-MMRRGWHPDEYT--FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
            R+ LQ +++   HP  Y   F F+ +        + G   HA I   G   N F+   +
Sbjct: 63  LRILLQPILQHFPHPSSYAPIFQFLTRH----NFIKLGQQAHAQIVLHGLQPNAFLAAKM 118

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG---LMLFARMTGD 233
           +AMYA    L  A  +FD +  P     + +N+I+ AY + G        L  +ARM   
Sbjct: 119 VAMYASSGDLDSAVVVFDRIDNP---SSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHF- 174

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMMEE 267
           + + GD  +L   L +CA L     G+                          +CG++ +
Sbjct: 175 LGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGD 234

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A+K+F++M V+D+ SWNA++ GY + G    A  LF++M       N+V+W+A+I+GY Q
Sbjct: 235 ARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHR----NIVSWTAMISGYTQ 290

Query: 328 RGHGHEALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            G   +AL +F +M   G  ++PN VT+VS+L  CA   AL  G+  H +     L ++ 
Sbjct: 291 NGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNS 350

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
           S      V  AL  MYAKC S+  AR  FD IA   +++  W  MI +Y+ +G   +A++
Sbjct: 351 S------VQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVS 404

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CL 503
           +F  M +    V+P+A T    L  C+    +  G  ++ +        + P V +  C+
Sbjct: 405 IFENMLRAG--VQPDAVTFMGLLSGCSHSGLIDAG--LNHFNDMGTIHSVEPRVEHYACV 460

Query: 504 IDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           +D+  R+G +  A+ +   +  Q     W +L+     H
Sbjct: 461 VDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSH 499



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 43/347 (12%)

Query: 57  HQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR-- 112
           H QI++  L       + ++A Y S      A+ +  RI  +P S+ + N++IR   R  
Sbjct: 100 HAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRID-NPSSLLY-NSIIRAYTRHG 157

Query: 113 -LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF 171
                      + +M   G   D +T PFVLK+C +L     G  VH      G + + +
Sbjct: 158 XXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFY 217

Query: 172 VCNALMAMYARCDTLSYARQLFDEMF------------------QPGICD---------- 203
           V  +L+ MY +C  +  AR+LFD+M                   + G+ +          
Sbjct: 218 VGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRN 277

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQC 262
           IVSW  +++ Y Q+G AE  L LF  M  D  +++ + V++V+ L ACA      RG++ 
Sbjct: 278 IVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRI 337

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                   +     V+      A+   Y++  S  +A   F  + Q     N++ W+ +I
Sbjct: 338 HDFANGIGLHLNSSVQ-----TALAGMYAKCYSLVEARCCFDMIAQNGK--NLIAWNTMI 390

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
             YA  G G EA+ +F  M   G++P+ VT + LLSGC+  G +  G
Sbjct: 391 TAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 437



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 11/232 (4%)

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
           ++ G+Q HA ++ +  +    F+A  ++ MY+ SGD+D+A VVFD +   + + + S++ 
Sbjct: 93  IKLGQQAHAQIVLHGLQP-NAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIR 151

Query: 537 GYGMHGLGDKAHW---AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
            Y  HG          A+ +M   GL  D  T   +L +C+    V  G +         
Sbjct: 152 AYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG-RCVHGQGLRV 210

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           G+       A ++D+  +   + +A +L + M +      W AL+ G      + + E  
Sbjct: 211 GLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMA-SWNALIAGYMKEGEIGVAEDL 269

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
             R   +E     S+T + + Y   G  +    +   M   G + +P  +WV
Sbjct: 270 FER---MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKP--NWV 316


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 386/693 (55%), Gaps = 45/693 (6%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF- 227
           N+F  NAL++  A    L     LF  M Q    D VS+N ++A ++  G     + L+ 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQR---DTVSYNAVIAGFSGGGAHARAVRLYH 127

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------------- 261
             +     V+   +++   + A ++LG  + G+Q                          
Sbjct: 128 TLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAK 187

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
            G++ +AK+VF+ M  K+VV +N M+TG  R    E+A  LF+ M   +     +TW+ +
Sbjct: 188 MGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDC----ITWTTM 243

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           + G+ Q G   +AL+ FR+M+F G+  +  T  S+L+ C ++ AL  GK+ H Y I+   
Sbjct: 244 VTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT-- 301

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
                + D++ V +AL+DMY+KC+S+  A   F  ++ KN  + +WT +I  Y QNG + 
Sbjct: 302 ----HYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKN--IISWTALIVGYGQNGCSE 355

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A+ +F +M Q+D  + P+ FTL   + +CA LA+L  G Q H   L +     I  V+N
Sbjct: 356 EAVRVFSEM-QRDG-IDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYIT-VSN 412

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L+ +Y + G I+ A  +FD +   + VSWT+L+TGY   G   +    F++M  + + P
Sbjct: 413 ALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKP 472

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           DGVTF+ +L ACS +G V++G  YF SM K+ GI    +HY C++DL  R+ RL EA E 
Sbjct: 473 DGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEF 532

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           I+ MPM P  I W  LL+ CR+  ++E+G+ AA  LLE++ +   SY LL +++A  G W
Sbjct: 533 IKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNW 592

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
             VA++R  M+   VKK PGCSW++ K     F   D++HP S+ IYE L  L  ++   
Sbjct: 593 NQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEE 652

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GY P  S  LHDV D +K  ++  HSEKLA+A+G++      PIRI KNLR+C DCH+A 
Sbjct: 653 GYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNAT 712

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             IS I   +I++RD+ RFH F  G C+C  +W
Sbjct: 713 KLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 209/410 (50%), Gaps = 44/410 (10%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G    A++VF+     ++ ++NA+++  +     +D  +LF  M Q     + V+++A
Sbjct: 53  KAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQR----DTVSYNA 108

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTI- 377
           VIAG++  G    A+ ++  +   G  + P+ +T+ +++   +++G   LG++ HC  + 
Sbjct: 109 VIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILR 168

Query: 378 --------------------------KRVL-SVDGSHPDDLMVINALIDMYAKCKSVDVA 410
                                     KRV   +DG    ++++ N +I    +CK V+ A
Sbjct: 169 LGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGK---NVVMYNTMITGLLRCKMVEEA 225

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           R +F+ +   +RD  TWT M+  ++QNG  + AL  F +M  Q   +  + +T    L A
Sbjct: 226 RRLFEVMT--DRDCITWTTMVTGFTQNGLESQALNFFRRMRFQG--IAIDQYTFGSILTA 281

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           C  L+AL  G+QIHAY++R  Y+  + FV + L+DMYS+   I  A   F  +  +N++S
Sbjct: 282 CGALSALEQGKQIHAYIIRTHYDDNV-FVGSALVDMYSKCRSIKPAETAFRRMSCKNIIS 340

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WT+L+ GYG +G  ++A   F +M+++G+ PD  T   ++ +C++   +++G + F  ++
Sbjct: 341 WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLA 399

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              G+         +V L G+   +++A  L + M      + W AL+ G
Sbjct: 400 LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ-VSWTALVTG 448



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 139/589 (23%), Positives = 238/589 (40%), Gaps = 144/589 (24%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLP 116
           +I++ L H PP+HL+   ++    +   +  +R+   +P P ++F +NAL+      RL 
Sbjct: 30  VILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHP-NLFTYNALLSTLAHARLL 88

Query: 117 DNAFRLFLQMMRR---------------GWH------------------PDEYTFPFVLK 143
           D+   LF  M +R               G H                  P   T   ++ 
Sbjct: 89  DDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVM 148

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC- 202
           A   L     G   H  I   GF  N FV + L+ MYA+   +  A+++FDEM    +  
Sbjct: 149 AASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVM 208

Query: 203 ---------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
                                      D ++W T+V  + Q+G     L  F RM    +
Sbjct: 209 YNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM----R 264

Query: 236 VQG---DGVSLVNALSACASLGTWSRGKQ--------------------------CGMME 266
            QG   D  +  + L+AC +L    +GKQ                          C  ++
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIK 324

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
            A+  F RM  K+++SW A++ GY + G  E+A  +F +M+++                 
Sbjct: 325 PAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD----------------- 367

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
                             G++P+  TL S++S CA++ +L  G + HC  +   L     
Sbjct: 368 ------------------GIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM---- 405

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
               + V NAL+ +Y KC S++ A  +FD +     D  +WT ++  Y+Q G A + + L
Sbjct: 406 --HYITVSNALVTLYGKCGSIEDAHRLFDEML--FHDQVSWTALVTGYAQFGRAKETIDL 461

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F +M  +D  VKP+  T    L AC+R   +  G      + ++   + I     C+ID+
Sbjct: 462 FEKMLAKD--VKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDL 519

Query: 507 YSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           YSRSG +  A      +    + + W +L++   + G  +   WA + +
Sbjct: 520 YSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENL 568



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 160/348 (45%), Gaps = 73/348 (20%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++    +  L   A   F +M  +G   D+YTF  +L ACG L +   G  +HA I 
Sbjct: 240 WTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYII 299

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + +D NVFV +AL+ MY++C ++  A   F  M      +I+SW  ++  Y Q+G +E 
Sbjct: 300 RTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM---SCKNIISWTALIVGYGQNGCSEE 356

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
            + +F+ M  D  +  D  +L + +S+CA+L +   G Q                     
Sbjct: 357 AVRVFSEMQRD-GIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALV 415

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                CG +E+A ++F+ M   D VSW A+VTGY++ G  ++   LF+KM  ++VK + V
Sbjct: 416 TLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGV 475

Query: 317 TWSAVI-----AGYAQRG----------HG---------------------HEALDVFRQ 340
           T+  V+     AG+ ++G          HG                      EA +  +Q
Sbjct: 476 TFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQ 535

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           M    + P+ +   +LLS C   G + +G+    +  + +L +D  +P
Sbjct: 536 MP---MHPDAIGWGTLLSACRLRGDMEIGQ----WAAENLLEIDPQNP 576


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/669 (37%), Positives = 381/669 (56%), Gaps = 64/669 (9%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +VF  NA+++ Y++   +   R +FD+M    + D VS+NT++A ++ +G +   L  F 
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQM---SVHDAVSYNTVIAGFSGNGCSSQALEFFV 144

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
           RM  +   +    + V+ L AC+ L    RGKQ      A  + E      V  WNA+  
Sbjct: 145 RMQEE-GFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGE-----SVFVWNALTN 198

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y++ G+ + A  LF +M    V  NVV+W+++I+GY Q G       +F +MQ  GL P
Sbjct: 199 MYAKCGALDQARWLFDRM----VNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMP 254

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           + VT                                         I+ ++  Y +C  +D
Sbjct: 255 DQVT-----------------------------------------ISNILSAYFQCGYID 273

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A   F  I  K +D   WT M+   +QNG   DAL LF +M  ++  V+P+ FT+S  +
Sbjct: 274 EACKTFREI--KEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLEN--VRPDNFTISSVV 329

Query: 469 MACARLAALRFGRQIH--AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            +CARLA+L  G+ +H  A +    +++L   V++ L+DMYS+ G+   A +VF  +  R
Sbjct: 330 SSCARLASLCQGQAVHGKAVIFGVDHDLL---VSSALVDMYSKCGETADAWIVFKRMLTR 386

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NV+SW S++ GY  +G   +A   +++M  E L PD +TF+ +L AC H+G+V++G  YF
Sbjct: 387 NVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYF 446

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
            S+SK  G++   +HY+C+++LLGRA  +D+AV+LI+ M  EP  +IW  LL+ CRI+ +
Sbjct: 447 YSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCD 506

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           V  GE+AA  L EL+    G Y +LSNIYA  GRWKDVA +RSLMK+  +KK    SW++
Sbjct: 507 VNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIE 566

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
                  F   DRTH ++++IYE L  L+++++  G+ P T+  LHDV +EEK D +  H
Sbjct: 567 IDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYH 626

Query: 767 SEKLALAYGILTTAPG-TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           SEKLALA+ ++    G TPIRI KN+R+CGDCH  + F+S II   IILRD NRFHHF E
Sbjct: 627 SEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIE 686

Query: 826 GSCTCKGYW 834
           G C+CK  W
Sbjct: 687 GRCSCKDSW 695



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 204/420 (48%), Gaps = 61/420 (14%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A   F++M   G+   +YT   VL AC +L   + G  +H  I ++    +VFV NAL  
Sbjct: 139 ALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTN 198

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA+C  L  AR LFD M      ++VSWN++++ Y Q+G  E    LF  M     +  
Sbjct: 199 MYAKCGALDQARWLFDRMVNK---NVVSWNSMISGYLQNGQPETCTKLFCEMQSS-GLMP 254

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D V++ N LSA           QCG ++EA K F  +K KD V W  M+ G ++ G  ED
Sbjct: 255 DQVTISNILSAYF---------QCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEED 305

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF++M  ENV+                                   P+  T+ S++S
Sbjct: 306 ALLLFREMLLENVR-----------------------------------PDNFTISSVVS 330

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA + +L  G+  H   +  +  VD     DL+V +AL+DMY+KC     A ++F  + 
Sbjct: 331 SCARLASLCQGQAVHGKAV--IFGVD----HDLLVSSALVDMYSKCGETADAWIVFKRML 384

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            +N  V +W  MI  Y+QNG   +ALAL+ +M  ++  +KP+  T    L AC     + 
Sbjct: 385 TRN--VISWNSMILGYAQNGKDLEALALYEEMLHEN--LKPDNITFVGVLSACMHAGLVE 440

Query: 479 FGRQIHAYVLRNQYEMLIPFVA-NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMT 536
            G Q + Y +   + M   F   +C+I++  R+G +D A  +  ++  + N + W++L++
Sbjct: 441 RG-QGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 32/235 (13%)

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            P D  + N L+ +YAK  ++  AR +FD ++   RDV +W  M+ +YS++G   D  A+
Sbjct: 54  QPTDTFLQNRLLHLYAKSGNLSDARDLFDKMS--RRDVFSWNAMLSAYSKSGNVEDLRAV 111

Query: 447 FPQMFQQDKL-----------------------------VKPNAFTLSCALMACARLAAL 477
           F QM   D +                              +   +T    L AC++L  +
Sbjct: 112 FDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDI 171

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           + G+QIH  ++       + FV N L +MY++ G +D AR +FD +  +NVVSW S+++G
Sbjct: 172 KRGKQIHGRIVATSLGESV-FVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISG 230

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           Y  +G  +     F +M+  GL PD VT   +L A    G +D+  K F  + ++
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEK 285



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 73/324 (22%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SVF WNAL     +    D A  LF +M+ +    +  ++  ++    +       + + 
Sbjct: 189 SVFVWNALTNMYAKCGALDQARWLFDRMVNK----NVVSWNSMISGYLQNGQPETCTKLF 244

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             + SSG   +    + +++ Y +C  +  A + F E+ +    D V W T++   AQ+G
Sbjct: 245 CEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEK---DKVCWTTMMVGCAQNG 301

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             E  L+LF  M  +  V+ D  ++ + +S+CA L +  +G+                  
Sbjct: 302 KEEDALLLFREMLLE-NVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVS 360

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG   +A  VF+RM  ++V+SWN+M+ GY++ G   +A AL+++M  EN+K
Sbjct: 361 SALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLK 420

Query: 313 LNVVTWSAVI-----AGYAQRGHGH-------------------------------EALD 336
            + +T+  V+     AG  +RG G+                               +A+D
Sbjct: 421 PDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVD 480

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGC 360
           + + M F   EPN +   +LLS C
Sbjct: 481 LIKSMTF---EPNCLIWSTLLSVC 501



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 70/133 (52%), Gaps = 4/133 (3%)

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N+ + +  L+ C R   +   +++  ++  + Y+    F+ N L+ +Y++SG++  AR +
Sbjct: 21  NSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDL 80

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD + +R+V SW ++++ Y   G  +     FDQM       D V++  ++   S +G  
Sbjct: 81  FDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS----VHDAVSYNTVIAGFSGNGCS 136

Query: 580 DQGLKYFDSMSKE 592
            Q L++F  M +E
Sbjct: 137 SQALEFFVRMQEE 149


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 269/772 (34%), Positives = 409/772 (52%), Gaps = 31/772 (4%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + +I+ +V     S A  L   +     +V  W  L+    R    D AF+LF QM 
Sbjct: 80  VSTNTMISGHVKTGDVSSARDLFDAMPDR--TVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 128 RRG--WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF--VCNALMAMYARC 183
           R      PD  TF  +L  C +         VHA     GFD+N F  V N L+  Y   
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV 197

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             L  A  LF+E+ +    D V++NT++  Y + G     + LF +M        D  + 
Sbjct: 198 RRLDLACVLFEEIPEK---DSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSD-FTF 253

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
              L A   L  ++ G+Q   +      F R    D    N ++  YS+     +   LF
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALS-VTTGFSR----DASVGNQILDFYSKHDRVLETRMLF 308

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            +M +    L+ V+++ VI+ Y+Q      +L  FR+MQ  G +       ++LS  A++
Sbjct: 309 DEMPE----LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
            +L +G++ HC  +  + + D      L V N+L+DMYAKC+  + A ++F ++    R 
Sbjct: 365 SSLQMGRQLHCQAL--LATADSI----LHVGNSLVDMYAKCEMFEEAELIFKSLP--QRT 416

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
             +WT +I  Y Q G     L LF +M   +  ++ +  T +  L A A  A+L  G+Q+
Sbjct: 417 TVSWTALISGYVQKGLHGAGLKLFTKMRGSN--LRADQSTFATVLKASASFASLLLGKQL 474

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           HA+++R+   +   F  + L+DMY++ G I  A  VF+ +  RN VSW +L++ +  +G 
Sbjct: 475 HAFIIRSG-NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGD 533

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G+ A  AF +M + GL PD V+ L +L ACSH G V+QG +YF +MS  +GI+ + +HYA
Sbjct: 534 GEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYA 593

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C++DLLGR  R  EA +L++ MP EP  I+W ++LN CRIH N  L E AA +L  +E  
Sbjct: 594 CMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKL 653

Query: 664 KDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           +D + Y  +SNIYA AG W+ V  ++  M+  G+KK P  SWV+       F   D+THP
Sbjct: 654 RDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHP 713

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
              +I   +  L   I+  GY P TS  + DVD++ K + L  HSE+LA+A+ +++T  G
Sbjct: 714 NGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEG 773

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PI + KNLR C DCH+AI  IS I+  EI +RD++RFHHF EG C+C  YW
Sbjct: 774 CPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 178/382 (46%), Gaps = 21/382 (5%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A+KV++ M  K+ VS N M++G+ + G    A  LF  M        VVTW+ ++
Sbjct: 62  GQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDR----TVVTWTILM 117

Query: 323 AGYAQRGHGHEALDVFRQM---QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
             YA+  H  EA  +FRQM     C L P+ VT  +LL GC          + H + +K 
Sbjct: 118 GWYARNSHFDEAFKLFRQMCRSSSCTL-PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVK- 175

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L  D ++P  L V N L+  Y + + +D+A V+F+ I  K  D  T+  +I  Y ++G 
Sbjct: 176 -LGFD-TNP-FLTVSNVLLKSYCEVRRLDLACVLFEEIPEK--DSVTFNTLITGYEKDGL 230

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +++ LF +M Q     +P+ FT S  L A   L     G+Q+HA  +   +      V
Sbjct: 231 YTESIHLFLKMRQSGH--QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDAS-V 287

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N ++D YS+   +   R++FD + + + VS+  +++ Y      + +   F +M+  G 
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA-CIVDLLGRANRLDEA 618
                 F  +L   ++   +  G +           +    H    +VD+  +    +EA
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQL--HCQALLATADSILHVGNSLVDMYAKCEMFEEA 405

Query: 619 VELIEGMPMEPTPIIWVALLNG 640
             + + +P + T + W AL++G
Sbjct: 406 ELIFKSLP-QRTTVSWTALISG 426


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 265/767 (34%), Positives = 411/767 (53%), Gaps = 36/767 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRI--SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +I+ YV     S  L++ +RI       +V  W  +I    +     +AF+LF +M R G
Sbjct: 80  IISGYVK----SGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSG 135

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD  T+  +L  C +L  ++     HA I   G   N  VCN L+  Y +   L  AR
Sbjct: 136 SQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSAR 195

Query: 191 QLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           +LF EM     C  D VS+N ++  YA +G  E  + LF  M  ++  +    +    +S
Sbjct: 196 RLFLEM-----CGWDSVSFNVMITGYANNGLNEEAIELFVEMQ-NLGFKPSDFTFAAVIS 249

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           A   L   + G+Q         V +   +++V   NA +  YS+     +   LF +M +
Sbjct: 250 ASVGLDDTAFGQQIHGF-----VVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPE 304

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
               L+ V+++ +I  YA  G   E++D+F+++QF   +       ++LS  AS   L +
Sbjct: 305 ----LDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQM 360

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G++ H   +     V  + PD   V N+L+DMYAKC   + A  +F  +   +R    WT
Sbjct: 361 GRQLHAQVV-----VSMADPD-FRVSNSLVDMYAKCGKFEEADRIF--LRLSSRSTVPWT 412

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI +  Q G   + L LF +M + +  V  +  T +C L A A LA++  G+Q+H+ V+
Sbjct: 413 AMISANVQRGLHENGLKLFYEMRRAN--VSADQATFACVLKASANLASILLGKQLHSCVI 470

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           R+ +  +  +    L+DMY+    I  A   F+ + +RNVV+W +L++ Y  +G G    
Sbjct: 471 RSGF--MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTL 528

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
            +F++M   G  PD V+FL +L ACSH  +V++GLKYF+ MS  + ++ + EHY  +VD 
Sbjct: 529 KSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDA 588

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS- 667
           L R+ R DEA +L+  MP EP  I+W ++LN CRIH N  L   AA +L  ++  +D + 
Sbjct: 589 LCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAP 648

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y  +SNI+A AG+W  V +++  M+  GV+K P  SWV+ K     F   D  HPQ  +I
Sbjct: 649 YVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEI 708

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
              +  L ++++  GY P  S A  +VD E K D L  HSE+LA+A+ ++ T  G+PI +
Sbjct: 709 LRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILV 768

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR C DCH+AI  IS I+  EI +RDSNRFHHF++GSC+C  YW
Sbjct: 769 MKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 5/179 (2%)

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           I+ +I  Y K  ++ VAR +FD      R V  WT MIG+YS++    DA  LF +M + 
Sbjct: 77  IDIIISGYVKSGNLTVARRIFDDT--DERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRS 134

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
               +P+  T    L  C  L   +   Q HA +++  +  L   V N L+D Y ++G +
Sbjct: 135 GS--QPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHH-LNHRVCNTLLDSYFKTGGL 191

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           D+AR +F  +   + VS+  ++TGY  +GL ++A   F +M+  G  P   TF  ++ A
Sbjct: 192 DSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISA 250



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+   A  L +Q      F  + +I  Y +SG++  AR +FD+  +R VV+WT+++  Y 
Sbjct: 57  GQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYS 116

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
                  A   F +M + G  PD VT++ LL  C+    ++   + + + ++   +    
Sbjct: 117 KSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCND---LEVAKELYQAHAQIVKLGHHL 173

Query: 600 EHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
            H  C  ++D   +   LD A  L   M    + + +  ++ G   +AN  L E A    
Sbjct: 174 NHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDS-VSFNVMITG---YANNGLNEEAIELF 229

Query: 658 LELESE--KDGSYTLLSNIYANAG 679
           +E+++   K   +T  + I A+ G
Sbjct: 230 VEMQNLGFKPSDFTFAAVISASVG 253


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 272/773 (35%), Positives = 423/773 (54%), Gaps = 47/773 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+AAY     P PA  LL  + P   +V  +N LI    R  L   +     +  R G  
Sbjct: 49  LLAAYCRLGGPLPARRLLDEM-PRRNAV-SFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D +++   L AC      R G +VHA+    G  S VFV N+L++MY++C  +  AR++
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACA 251
           FD   +    D VSWN++V+ Y ++G  E  + +FA M  G + +  +  +L + +  C+
Sbjct: 167 FDVAEER---DDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGL--NSFALGSVIKCCS 221

Query: 252 SLGTWSRGKQCGMMEEAKKV----FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                  G+  G M+ A+ V     +     DV   +AM+  Y++ G+  +A ALF+ ++
Sbjct: 222 -------GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 308 QENVKLNVVTWSAVIAGYAQ------RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           + NV    V ++ +IAG+ +      +    EAL ++ ++Q  G++P   T  S+L  C 
Sbjct: 275 EPNV----VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACN 330

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
             G L  GK+ H   IK          +D  + +ALID+Y     ++     F + +PK+
Sbjct: 331 LAGYLEFGKQIHGQVIKYTFQ------EDDFIGSALIDLYFNSGCMEDGFRCFRS-SPKH 383

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
            D+ TWT M+    QN     AL+LF +       +KP+ FT+S  + ACA LA  R G 
Sbjct: 384 -DIVTWTAMVSGCVQNELHEKALSLFHESLGAG--LKPDLFTISSVMNACASLAVARAGE 440

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           QI  +  ++ ++     + N  + MY+RSGD+D A   F  ++  +VVSW+++++ +  H
Sbjct: 441 QIQCFATKSGFDRFT-VMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQH 499

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G    A   FD+M    + P+ +TFL +L ACSH G+VD+GL+Y+++M+K++G+S   +H
Sbjct: 500 GCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKH 559

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
             C+VDLLGRA RL +A   I        P+IW +LL  CRIH ++E G+L ANR++ELE
Sbjct: 560 CTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELE 619

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
                SY +L N+Y +AG     ++ R LMK  GVKK PG SW++ K G  +F  GD++H
Sbjct: 620 PTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSH 679

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P+S  IY  L  ++ RI+ +           ++   E+ +L+  HSEKLA+A G++    
Sbjct: 680 PESSAIYTKLEEMLSRIEKLATTDT------EISKREQ-NLMNCHSEKLAVALGMIHLPQ 732

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             PIR+ KNLR+C DCHS +  IS   N EIILRD  RFHHF++GSC+C  YW
Sbjct: 733 SAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCADYW 785


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 284/816 (34%), Positives = 433/816 (53%), Gaps = 42/816 (5%)

Query: 29  FSVTTTPCIKITSL--LLRQC---KSLTQVYLIHQQIIVQN--LTHVPPSHLIAAYVSHN 81
           +S +  PC+   +   +LR+C           IH  I+ +   L     + L+ AYV   
Sbjct: 39  WSDSVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAG 98

Query: 82  APSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV 141
               AL+L   + P   +V +       A +     +   L+ ++ R G   + + F   
Sbjct: 99  FDKDALNLFDEM-PERNNVSYVTLTQGYACQ-----DPVGLYSRLHREGHELNPHVFTSF 152

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LK    L  +     +H+ I   G+DSN FV  AL+  Y+ C ++  AR +F+ +     
Sbjct: 153 LKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCK-- 210

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            DIV W  IV+ Y ++G  E  L L +RM  D     +  +   AL A   LG +   K 
Sbjct: 211 -DIVVWAGIVSCYVENGCFEDSLQLLSRMGMD-GFMPNNYTFDTALKASIGLGAFHFAKS 268

Query: 262 C--GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
               +++   ++  R+ V        ++  Y+++G   DAF +F +M     K +VV WS
Sbjct: 269 VHGQILKTCYELDPRVGV-------GLLQLYTQLGDMSDAFKVFNEMP----KNDVVPWS 317

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
            +IA + Q G  ++A+D+F +M+   + PN  TL S+L+GCA      LG++ H   +K 
Sbjct: 318 FMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKV 377

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
              +D      + V NALID+YAKC+ +D A  +F  ++ KN  V +W  +I  Y   G 
Sbjct: 378 GFDLD------VYVSNALIDVYAKCEKMDTAVKLFAELSSKN--VVSWNTVIVGYENLGE 429

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
              AL +F +  +    V     T S AL ACA LA++  G Q+H   ++      +  V
Sbjct: 430 GGKALNMFREALRNQ--VSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVA-V 486

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           +N LIDMY++ GDI  A+ VF+ ++  +V SW +L++GY  HGLG +A   FD M+    
Sbjct: 487 SNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDC 546

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+G+TFL +L  CS++G++DQG   F+SM  + GI    EHY C+V L GR+ +LD+A+
Sbjct: 547 KPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAM 606

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LIEG+P EP+ +IW A+L+      N E    +A  +L++  + + +Y LLSN+YA A 
Sbjct: 607 NLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAK 666

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           +W +VA IR  MK  GVKK PG SW++ +     F VG   HP  + I  +L  L  +  
Sbjct: 667 QWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKAT 726

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKNLRICGDCH 798
             GYVP  +  L D+DDEEK   L+ HSE+LALAYG++   +    I I KNLRIC DCH
Sbjct: 727 RAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCH 786

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           SA+  IS I+  ++++RD NRFHHF  G C+C  +W
Sbjct: 787 SAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 394/725 (54%), Gaps = 37/725 (5%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS--------SGFDSN 169
           +A  LF  M+R G  PD  T   VL     LP +  G++   +I S            SN
Sbjct: 119 DAVSLFRDMLREGVAPDRVTVATVLN----LPPASGGTAAAIIIASLHPFALKLGLLHSN 174

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
           V VCN L+  Y +   L+ AR++F EM      D V++N ++   ++ G     L LFA 
Sbjct: 175 VVVCNTLLDAYCKHGLLAAARRVFQEMPHR---DSVTYNAMMMGCSKEGSHAEALDLFAA 231

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
           M     +     +    L+    +G    G+Q         +  R    +V   N+++  
Sbjct: 232 MRRK-GLAATRFTFSTVLTVATGVGDLCLGRQ------VHGLVARATSSNVFVNNSLLDF 284

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YS+    ++     KK+  E ++ + V+++ +IAGYA        L +FR+MQ    +  
Sbjct: 285 YSKCDCLDE----MKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQ 340

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            +   SLLS   SV  + +GK+ H   +   LS +       +V NALIDMY+KC  +D 
Sbjct: 341 ALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSED------LVGNALIDMYSKCGMLDA 394

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A+  F  I   ++   +WT MI    QNG   +AL LF  M +    + P+  T S  + 
Sbjct: 395 AKTNF--INKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAG--LSPDRATFSSTIK 450

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           A + LA +  GRQ+H+Y++R+ + M   F  + L+DMY++ G +D A   FD + +RN +
Sbjct: 451 ASSNLAMIGLGRQLHSYLIRSGH-MSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSI 509

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW ++++ Y  +G    A   F+ M   G  PD VTFL +L ACSH+G+ ++ +KYF+ M
Sbjct: 510 SWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELM 569

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
             E+GIS   EHY+C++D LGR  R D+  E++  MP E  PIIW ++L+ CR H N +L
Sbjct: 570 EYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDL 629

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
             +AA +L  + S     Y +LSNI+A AG+W+D A ++ +M+  G++K  G SWV+ K 
Sbjct: 630 ARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKH 689

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
              +F   D+T+P   +I + L  L + +   GY P TS  L  VDD+ K + L  HSE+
Sbjct: 690 KVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSER 749

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A+ ++ T PGTPIR+ KNL  C DCHSAI  +S I+N +II+RDS+RFHHFK+G C+
Sbjct: 750 LAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCS 809

Query: 830 CKGYW 834
           C  YW
Sbjct: 810 CGDYW 814



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 144/519 (27%), Positives = 236/519 (45%), Gaps = 41/519 (7%)

Query: 55  LIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLR 114
           L+H  ++V N        L+ AY  H   + A  + Q + P   SV  +NA++    +  
Sbjct: 170 LLHSNVVVCNT-------LLDAYCKHGLLAAARRVFQEM-PHRDSV-TYNAMMMGCSKEG 220

Query: 115 LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174
               A  LF  M R+G     +TF  VL     +     G  VH ++ +    SNVFV N
Sbjct: 221 SHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLV-ARATSSNVFVNN 279

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           +L+  Y++CD L   ++LF EM +    D VS+N ++A YA +  A   L LF  M   +
Sbjct: 280 SLLDFYSKCDCLDEMKKLFHEMIER---DNVSYNVMIAGYAWNRCASIVLRLFREMQS-L 335

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                 +   + LS   S+     GKQ      A+ V   +  +D+V  NA++  YS+ G
Sbjct: 336 SFDRQALPYASLLSVAGSVPHIGIGKQI----HAQLVLLGLSSEDLVG-NALIDMYSKCG 390

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             + A   F     +N K   V+W+A+I G  Q G   EAL +F  M+  GL P+  T  
Sbjct: 391 MLDAAKTNFI---NKNDKTG-VSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFS 446

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S +   +++  + LG++ H Y I+        H   +   +AL+DMY KC  +D A   F
Sbjct: 447 STIKASSNLAMIGLGRQLHSYLIR------SGHMSSVFSGSALLDMYTKCGCLDEALQTF 500

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +  +N    +W  +I +Y+  G A +A+ +F  M       KP++ T    L AC+  
Sbjct: 501 DEMPERNS--ISWNAVISAYAHYGQAKNAIKMFEGMLCYG--FKPDSVTFLSVLSACSHN 556

Query: 475 AALRFGRQIHAYVLRNQYEMLI-PFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVS 530
                  +   Y    +YE  I P+  +  C+ID   R G  D  + +   +  + + + 
Sbjct: 557 G---LAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPII 613

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           W+S++     HG  D A  A +++   G + D   +++L
Sbjct: 614 WSSILHSCRTHGNQDLARVAAEKLFSMG-STDATPYVIL 651



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 28/296 (9%)

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +M   G +P    L  LL    S G L            R L     H ++   +N ++ 
Sbjct: 24  RMVKTGFDPATYRLNLLLHSLISSGRLAQA---------RALFDQMPHRNNAFSLNRMLS 74

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG--ANDALALFPQMFQQDKLV 457
            Y++   +  A  +F +  P  RD  TWTVMIG+++   G  A+DA++LF  M ++   V
Sbjct: 75  GYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREG--V 132

Query: 458 KPNAFTLSCALM---ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
            P+  T++  L    A    AA      +H + L+         V N L+D Y + G + 
Sbjct: 133 APDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLA 192

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR VF  +  R+ V++ ++M G    G   +A   F  MR++GLA    TF  +L   +
Sbjct: 193 AARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVAT 252

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIV-----DLLGRANRLDEAVELIEGM 625
             G +  G +         G+ ARA      V     D   + + LDE  +L   M
Sbjct: 253 GVGDLCLGRQV-------HGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEM 301


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/772 (33%), Positives = 401/772 (51%), Gaps = 85/772 (11%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P+P ++ W  A+I      +L      LF +M       +  T   VL+ACG++ +    
Sbjct: 195 PNPEALLWNEAIILNLQSEKL-QKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAA 253

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC------------ 202
             +H  +   G DS+V +CN L++MY++   L  AR++FD M                  
Sbjct: 254 KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 313

Query: 203 --------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
                               DIV+WN +++ +   G  E  L +  RM G+   + +  S
Sbjct: 314 GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSS 372

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
           + + L A + LG  + GK     E    V       DV    +++  Y +  S   A A+
Sbjct: 373 MTSVLQAISELGFLNMGK-----ETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F  M+  N+      W+++++GY+ +G   +AL +  QM+  G++P++VT   ++SG A 
Sbjct: 428 FDNMKNRNI----FAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAM 483

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
            G    GKE                   L V++       + KS+         + P   
Sbjct: 484 WGC---GKEA------------------LAVLH-------QTKSL--------GLTP--- 504

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           +V +WT +I   SQ G   D+L  F QM Q+   V PN+ +++C L ACA L+ L+ G++
Sbjct: 505 NVVSWTALISGSSQAGNNRDSLKFFAQMQQEG--VMPNSASITCLLRACASLSLLQKGKE 562

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           IH   +RN +   + FVA  LIDMYS+S  +  A  VF  ++ + + SW  ++ G+ + G
Sbjct: 563 IHCLSIRNGFIEDV-FVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG 621

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
           LG +A   F++M+K G+ PD +TF  LL AC +SG++ +G KYFDSM  ++ I  R EHY
Sbjct: 622 LGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHY 681

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
            C+VDLLGRA  LDEA +LI  MP++P   IW ALL  CRIH N++  E AA  L +LE 
Sbjct: 682 CCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEP 741

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
               +Y L+ N+Y+   RW+D+  +R LM   GV+ R   SW+Q  +    F   ++ HP
Sbjct: 742 NNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHP 801

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
            + KIY  L  LV  +K +GYVP  +    ++D+ EK  +L  H+EKLA+ YG++    G
Sbjct: 802 DAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAG 861

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PIR+ KN RIC DCHSA  +IS++   E+ LRD  RFHHF+EG C+C  +W
Sbjct: 862 EPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 156/604 (25%), Positives = 276/604 (45%), Gaps = 87/604 (14%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSH-NAPSPALSLLQRISPSPFSVFWWN 104
           SLT V ++H Q+I       P +   +LI++Y+   +  S A+     +   P +   WN
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGL---PRNYLKWN 101

Query: 105 ALIRR----AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           + +      A  L +      +F ++  +G   D   +   LK C  +     G  +H  
Sbjct: 102 SFVEEFKSSAGSLHI---VLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGC 158

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   GFD +V++  ALM  Y RC  L  A Q+F EM  P   + + WN  +    QS   
Sbjct: 159 LIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNP---EALLWNEAIILNLQSEKL 215

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------------------ 262
           + G+ LF +M     ++ +  ++V  L AC  +G  +  KQ                   
Sbjct: 216 QKGVELFRKMQFSF-LKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 274

Query: 263 --------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                   G +E A++VF+ M+ ++  SWN+M++ Y+ +G   DA++LF ++   ++K +
Sbjct: 275 LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 334

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           +VTW+ +++G+   G+  E L++ ++MQ  G +PN  ++ S+L   + +G L +GKETH 
Sbjct: 335 IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHG 394

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           Y ++           D+ V  +LIDMY K  S+  A+ +FD +  KNR++  W  ++  Y
Sbjct: 395 YVLRNGFDC------DVYVGTSLIDMYVKNHSLTSAQAVFDNM--KNRNIFAWNSLVSGY 446

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           S  G   DAL L  QM ++   +KP+  T +  +   A       G++  A + + +   
Sbjct: 447 SFKGMFEDALRLLNQMEKEG--IKPDLVTWNGMISGYAMWGC---GKEALAVLHQTKSLG 501

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           L P                             NVVSWT+L++G    G    +   F QM
Sbjct: 502 LTP-----------------------------NVVSWTALISGSSQAGNNRDSLKFFAQM 532

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           ++EG+ P+  +   LL AC+   ++ +G K    +S   G          ++D+  +++ 
Sbjct: 533 QQEGVMPNSASITCLLRACASLSLLQKG-KEIHCLSIRNGFIEDVFVATALIDMYSKSSS 591

Query: 615 LDEA 618
           L  A
Sbjct: 592 LKNA 595


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 375/660 (56%), Gaps = 22/660 (3%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L A  A    L YA  LF    +P +     +N ++ A+  +G  E  L LF  M     
Sbjct: 56  LEAAAASPTLLPYAVSLFRLGPRPPL-STPCYNVLMRAFLHAGHPEDALHLFIEMLHAAS 114

Query: 236 V-QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
               D  +   AL +C+ +     G+  G+   A K   R  V D    ++++  Y+  G
Sbjct: 115 ACPADQHTAACALKSCSRMCALDVGR--GVQAYAVK---RGLVADRFVLSSLIHMYASCG 169

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
               A  +F    +  V    V W+A++A Y + G   E +++F+ M   G+  + VTLV
Sbjct: 170 DVAAARLVFDAAEESGV----VMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLV 225

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+++ C  +G   LGK    +  +  L+ +        ++ AL+DMYAKC  +  AR +F
Sbjct: 226 SVVTACGRIGDAKLGKWVAGHVDEEGLARNPK------LVTALMDMYAKCGEIGKARRLF 279

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +  ++RDV  W+ MI  Y+Q     +AL LF +M  Q   V+PN  T+   L ACA L
Sbjct: 280 DGM--QSRDVVAWSAMISGYTQADQCREALGLFSEM--QLARVEPNDVTMVSVLSACAVL 335

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            AL  G+ +H+YV R +   L   +   L+D Y++ G ID A   F+++  +N  +WT+L
Sbjct: 336 GALETGKWVHSYVRRKRLS-LTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTAL 394

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + G   +G G +A   F  MR+ G+ P  VTF+ +L ACSHS +V++G ++FDSM++++G
Sbjct: 395 IKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYG 454

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I  R EHY C+VDLLGRA  +DEA + I  MP+EP  +IW ALL+ C +H NV +GE A 
Sbjct: 455 IKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            +++ L     G Y LLSNIYA+AG+WKD A +R  MK  G++K PGCS ++       F
Sbjct: 515 KQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEF 574

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
           F  D  HP+ ++IY+ +  ++ RIK  GYVP T+    +V++ EK   +  HSEKLA+A+
Sbjct: 575 FAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAF 634

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G++   PG  IR++KNLR+C DCHSA   IS + + EI++RD N FHHFK+G+C+C  YW
Sbjct: 635 GLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/511 (29%), Positives = 243/511 (47%), Gaps = 85/511 (16%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-- 128
           S L AA  S      A+SL +     P S   +N L+R  +    P++A  LF++M+   
Sbjct: 54  SLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAA 113

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
                D++T    LK+C  + +   G  V A     G  ++ FV ++L+ MYA C  ++ 
Sbjct: 114 SACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAA 173

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR +FD   + G   +V WN IVAAY ++GD    + +F  M  +V V  D V+LV+ ++
Sbjct: 174 ARLVFDAAEESG---VVMWNAIVAAYLKNGDWMEVVEMFKGML-EVGVAFDEVTLVSVVT 229

Query: 249 AC-----ASLGTWSRG---------------------KQCGMMEEAKKVFERMKVKDVVS 282
           AC     A LG W  G                      +CG + +A+++F+ M+ +DVV+
Sbjct: 230 ACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVA 289

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           W+AM++GY++     +A  LF +M+   V                               
Sbjct: 290 WSAMISGYTQADQCREALGLFSEMQLARV------------------------------- 318

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
               EPN VT+VS+LS CA +GAL  GK  H Y  ++ LS+        ++  AL+D YA
Sbjct: 319 ----EPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSL------TTILGTALVDFYA 368

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +D A   F+++  KN    TWT +I   + NG   +AL LF  M  ++  ++P   
Sbjct: 369 KCGCIDDAVEAFESMPVKNS--WTWTALIKGMATNGRGREALELFSSM--REAGIEPTDV 424

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           T    LMAC+    +  GR+ H   +   Y  + P V +  C++D+  R+G +D A    
Sbjct: 425 TFIGVLMACSHSCLVEEGRR-HFDSMARDYG-IKPRVEHYGCMVDLLGRAGLVDEAYQFI 482

Query: 521 DNLK-QRNVVSWTSLMTGYGMH---GLGDKA 547
             +  + N V W +L++   +H   G+G++A
Sbjct: 483 RTMPIEPNAVIWRALLSSCAVHRNVGIGEEA 513



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 166/363 (45%), Gaps = 32/363 (8%)

Query: 10  LLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLL-LRQCKSL--------TQVYLIHQQI 60
            L +  P    HLF  + L + +  P  + T+   L+ C  +         Q Y + + +
Sbjct: 93  FLHAGHPEDALHLFIEM-LHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151

Query: 61  IVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPD--N 118
           +         S LI  Y S    + A  +      S   V  WNA++  A  L+  D   
Sbjct: 152 VADRFVL---SSLIHMYASCGDVAAARLVFDAAEES--GVVMWNAIV--AAYLKNGDWME 204

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
              +F  M+  G   DE T   V+ ACG +  ++ G  V   +   G   N  +  ALM 
Sbjct: 205 VVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMD 264

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA+C  +  AR+LFD M      D+V+W+ +++ Y Q+      L LF+ M    +V+ 
Sbjct: 265 MYAKCGEIGKARRLFDGMQSR---DVVAWSAMISGYTQADQCREALGLFSEMQ-LARVEP 320

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           + V++V+ LSACA LG    GK        K    R+ +  ++   A+V  Y++ G  +D
Sbjct: 321 NDVTMVSVLSACAVLGALETGKWVHSYVRRK----RLSLTTILG-TALVDFYAKCGCIDD 375

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A   F+ M  +    N  TW+A+I G A  G G EAL++F  M+  G+EP  VT + +L 
Sbjct: 376 AVEAFESMPVK----NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLM 431

Query: 359 GCA 361
            C+
Sbjct: 432 ACS 434


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/725 (35%), Positives = 392/725 (54%), Gaps = 56/725 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD--TLSYARQLFDEMFQ 198
           ++K C  +   +    +H+    +G  SN  V   ++A   + +   + YAR +FD M  
Sbjct: 25  LIKTCKSMAQLK---QIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTM-- 79

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
           PG    V WN ++  Y++ G     + ++  M  +  V  D  +    L       T   
Sbjct: 80  PGPNHFV-WNNMIKGYSRVGCPNSAVSMYCEML-ERGVMPDEYTYPFLLKRF----TRDT 133

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
             +CG  E    + +     +V   NA++  YS  G    A  +F +    + K +VVTW
Sbjct: 134 AVKCGR-ELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDR----SSKGDVVTW 188

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           + +I+GY +     E++ +F +M+   + P+ +TLVS+LS C+ +  L +GK  H Y   
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV-- 246

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN----------------- 421
           + L ++       ++ NALIDMYA C  +D A  +FD +  ++                 
Sbjct: 247 KDLKIEPVR----VLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQV 302

Query: 422 ------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
                       RD  +WT MI  Y Q     + L+LF +M  Q   +KP+ FT+   L 
Sbjct: 303 GLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM--QAANIKPDEFTMVSILT 360

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           ACA L AL  G  I AY+ +N+ + +  FV N LIDMY   G+++ A  +F+ +  R+ +
Sbjct: 361 ACAHLGALELGEWIKAYIDKNEIK-IDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKI 419

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SWT+++ G  ++G G++A   F QM K  + PD VT + +L AC+HSGMVD+G K+F  M
Sbjct: 420 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARM 479

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
           + + GI     HY C+VDLLGRA  L EA E+I+ MP++P  I+W +LL  CR+H + E+
Sbjct: 480 TTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEM 539

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            E+AA ++LELE E    Y LL NIYA   RW+ +  +R LM   G+KK PGCS ++   
Sbjct: 540 AEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNG 599

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F  GD+ HPQS++IY  L  +   +K  GY P TS    D+ +EEK   ++ HSEK
Sbjct: 600 SVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEK 659

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A+G++++ PG  IRI KNLR+C DCH     +S + N E+I+RD  RFHHF+ GSC+
Sbjct: 660 LAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCS 719

Query: 830 CKGYW 834
           CK YW
Sbjct: 720 CKDYW 724



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 182/575 (31%), Positives = 290/575 (50%), Gaps = 59/575 (10%)

Query: 28  LFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSP 85
           L S+  TP +     L++ CKS+ Q+  IH Q I   L   P  P+ +IA    H     
Sbjct: 14  LPSLPQTPPLS----LIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDM 69

Query: 86  ALS-LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
             + ++    P P + F WN +I+   R+  P++A  ++ +M+ RG  PDEYT+PF+LK 
Sbjct: 70  EYARMVFDTMPGP-NHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR 128

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
                + +CG  +H  I   GF SNVFV NAL+ +Y+    +S AR +FD   +    D+
Sbjct: 129 FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKG---DV 185

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--- 261
           V+WN +++ Y +S   +  + LF  M   ++V    ++LV+ LSAC+ L   + GK+   
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEME-RMRVLPSSITLVSVLSACSKLKDLNVGKRVHR 244

Query: 262 -----------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
                                  CG M+ A  +F+ MK +DV+SW A+VTG++ +G    
Sbjct: 245 YVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGL 304

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A   F KM +     + V+W+A+I GY Q     E L +FR+MQ   ++P+  T+VS+L+
Sbjct: 305 ARNYFDKMPER----DFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILT 360

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA +GAL LG+    Y  K  + +D        V NALIDMY  C +V+ A  +F+A+ 
Sbjct: 361 ACAHLGALELGEWIKAYIDKNEIKIDS------FVGNALIDMYFNCGNVEKAIRIFNAMP 414

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
             +RD  +WT +I   + NG   +AL +F QM +    + P+  T    L AC     + 
Sbjct: 415 --HRDKISWTAVIFGLAINGYGEEALDMFSQMLKAS--ITPDEVTCIGVLCACTHSGMVD 470

Query: 479 FGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLM 535
            G++  A +       + P VA+  C++D+  R+G +  A  V  N+  + N + W SL+
Sbjct: 471 KGKKFFARMTTQH--GIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
               +H   + A  A  Q+ +  L P+     VLL
Sbjct: 529 GACRVHRDEEMAEMAAQQILE--LEPENGAVYVLL 561


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/745 (35%), Positives = 414/745 (55%), Gaps = 33/745 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +++ W  L+             R   +M + G  PD  TF   L +CG+  S R G  +H
Sbjct: 22  NLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIH 81

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++  S  + +  V NAL+ MY +C +LS+A+++F +M +    +++SW+ +  A+A  G
Sbjct: 82  QMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR--NVISWSIMAGAHALHG 139

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE--AKKVFERMK 276
           +    L  F R    + ++    ++V  LSAC+S      G+   M+    A   FE   
Sbjct: 140 NVWEALRHF-RFMLLLGIKATKSAMVTILSACSSPALVQDGR---MIHSCIALSGFE--- 192

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             +++  NA++T Y R G+ E+A  +F  M  +    +VV+W+ +++ Y     G +A+ 
Sbjct: 193 -SELLVANAVMTMYGRCGAVEEARKVFDAM--DEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           ++++MQ   L P+ VT VSLLS C+S   + LG+  H    K++  V+     +++V NA
Sbjct: 250 LYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLH----KQI--VNDELEKNVIVGNA 300

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK- 455
           L+ MYAKC S   AR +FD +  + R + +WT +I +Y +     +A  LF QM + +K 
Sbjct: 301 LVSMYAKCGSHTEARAVFDKM--EQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKN 358

Query: 456 ----LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
                VKP+A      L ACA ++AL  G+ +               V   ++++Y + G
Sbjct: 359 GSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSS-DKAVGTAVVNLYGKCG 417

Query: 512 DIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +I+ AR +FD +  R +V  W +++  Y   G   +A   F +M  EG+ PD  +F+ +L
Sbjct: 418 EIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSIL 477

Query: 571 YACSHSGMVDQGLKYFDSMSKEF-GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
            ACSH+G+ DQG  YF SM+ E+  ++   +H+ C+ DLLGR  RL EA E +E +P++P
Sbjct: 478 LACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKP 537

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
             + W +LL  CR H +++  +  AN+LL LE      Y  LSNIYA   +W  VA++R 
Sbjct: 538 DAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRK 597

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
            M   GVKK  G S ++  +    F  GD  HP++++I E LA L  ++K  GYVP T  
Sbjct: 598 FMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKM 657

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
            LH VD++EK  LLF HSE+LA+A G+++T  GTP+R+TKNLR+C DCH+A   IS I  
Sbjct: 658 VLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAG 717

Query: 810 HEIILRDSNRFHHFKEGSCTCKGYW 834
            +I++RD  RFH FK+G C+C+ YW
Sbjct: 718 RKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 239/467 (51%), Gaps = 32/467 (6%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA CD+   A+  FD + Q    ++ SW  +VAA+A SG ++  L    RM  D  V+ 
Sbjct: 1   MYAHCDSPGDAKAAFDALEQR---NLYSWTGLVAAFAISGQSKETLRALERMRQD-GVRP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D V+ + AL +C    +   G +   M     V  R+++   VS NA++  Y + GS   
Sbjct: 57  DAVTFITALGSCGDPESLRDGIRIHQM----VVDSRLEIDPKVS-NALLNMYKKCGSLSH 111

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  +F KM +     NV++WS +   +A  G+  EAL  FR M   G++     +V++LS
Sbjct: 112 AKRVFAKMERTR---NVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILS 168

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C+S   +  G+  H       +++ G    +L+V NA++ MY +C +V+ AR +FDA+ 
Sbjct: 169 ACSSPALVQDGRMIHS-----CIALSG-FESELLVANAVMTMYGRCGAVEEARKVFDAMD 222

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
              RDV +W +M+ +Y  N    DA+ L+ +M      ++P+  T    L AC+    + 
Sbjct: 223 EALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM-----QLRPDKVTYVSLLSACSSAEDVG 277

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            GR +H  ++ ++ E  +  V N L+ MY++ G    AR VFD ++QR+++SWT++++ Y
Sbjct: 278 LGRVLHKQIVNDELEKNV-IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAY 336

Query: 539 GMHGLGDKAHWAFDQM---RKEG----LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
               L  +A   F QM    K G    + PD + F+ +L AC+    ++QG K     + 
Sbjct: 337 VRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAA 395

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
             G+S+       +V+L G+   ++EA  + + +   P   +W A++
Sbjct: 396 SCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMI 442



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 184/411 (44%), Gaps = 48/411 (11%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYA C S   A+  FDA+  + R++ +WT ++ +++ +G + + L    +M Q    V+P
Sbjct: 1   MYAHCDSPGDAKAAFDAL--EQRNLYSWTGLVAAFAISGQSKETLRALERMRQDG--VRP 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +A T   AL +C    +LR G +IH  V+ ++ E + P V+N L++MY + G +  A+ V
Sbjct: 57  DAVTFITALGSCGDPESLRDGIRIHQMVVDSRLE-IDPKVSNALLNMYKKCGSLSHAKRV 115

Query: 520 FDNLKQ-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           F  +++ RNV+SW+ +   + +HG   +A   F  M   G+       + +L ACS   +
Sbjct: 116 FAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPAL 175

Query: 579 VDQG--------LKYFDS-------MSKEFGISARAEHYACIVDLLGRA----------- 612
           V  G        L  F+S       +   +G     E    + D +  A           
Sbjct: 176 VQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 235

Query: 613 ------NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
                 +R  +A++L + M + P  + +V+LL+ C    +V LG +   +++  E EK+ 
Sbjct: 236 STYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 667 SY-TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG-TATFFVGDRTHPQS 724
                L ++YA  G   +   +   M     ++R   SW            V +  H   
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKM-----EQRSIISWTTIISAYVRRRLVAEACHLFQ 350

Query: 725 QKIYEILAGLVQRIK--AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           Q +     G  QR+K  A+ +V   + A  DV   E+G ++ E +    L+
Sbjct: 351 QMLELEKNGSSQRVKPDALAFVTILN-ACADVSALEQGKMVSEQAASCGLS 400


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/749 (35%), Positives = 423/749 (56%), Gaps = 33/749 (4%)

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQ-MMRRGWHPDEYTFPFVLKACGELPSS 151
           I  +  ++  WNAL+  A     P     LF   ++  G   DE T   VL  C  L  S
Sbjct: 129 IPDAARNIVSWNALM--AALSGDPRRGLELFRDCLVAVGGMVDEATLVTVLPMCAALGWS 186

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G +VH +   SG+D+   V NAL+ MYA+C  L+ A + F     P    +VSWN ++
Sbjct: 187 ETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAF-----PEAPSVVSWNVML 241

Query: 212 AAYAQSGDAEG--GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
            AY ++ +A    GL+   ++     V  D +++++ L AC+     SR ++      A 
Sbjct: 242 GAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLREL----HAF 297

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
            V   +        NA+V  Y R G    A  +F  +R++ V     +W+ +I+ +AQ+ 
Sbjct: 298 TVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVS----SWNTLISAHAQQN 353

Query: 330 HGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
               A+++F QM   CGL+P+  ++ SLL  CA    LL  K TH + ++  L       
Sbjct: 354 TA-AAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLE------ 406

Query: 389 DDLMVINALIDMYAKCKSVD-VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
            D ++  +L+  Y +C   + +ARV+FDA+  K      W  MI  YSQNG   ++L LF
Sbjct: 407 RDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGE--VLWIAMISGYSQNGLPGESLQLF 464

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
            +M Q  +    +  + + ALMAC+ L+++R G+++H + L+       PF+++ LIDMY
Sbjct: 465 REM-QSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKADL-CDDPFLSSSLIDMY 522

Query: 508 SRSGDIDTARVVFDNLKQRNV-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           S+ G ++ AR  FD LK R+  VSWT+++TGY ++GLG +A   + +MR+EG+ PD  T+
Sbjct: 523 SKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTY 582

Query: 567 LVLLYACSHSGMVDQGLKYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           L LL AC H+GM+++GL++FD M +    I  + EHY+C++ +L RA R  +AV L+  M
Sbjct: 583 LGLLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEM 642

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P EP   I  ++L+ C IH   ELG   A RLLELE +K   Y L SN+YA + RW D+ 
Sbjct: 643 PQEPDAKILSSVLSACHIHGEAELGSDVAERLLELEPDKAEHYVLASNMYAGSRRWDDMR 702

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           ++R +++  G+ K PGCSW+       +F  G+  HP+ +++  +   L +RI+ +GYVP
Sbjct: 703 KVRKMLRDAGIAKEPGCSWIDVAGKVYSFVAGENPHPEMEQVRGMWRSLEERIREIGYVP 762

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T+  LH++++EEK + L+ HSEK A+ +G+L TA    +R+ KN+R+C DCH+A   IS
Sbjct: 763 DTTVVLHELEEEEKVEALWWHSEKQAVTFGLLRTATPATVRVFKNIRMCKDCHNAARLIS 822

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +   +I++RD  RFHHF+ G C+C  YW
Sbjct: 823 KVTGRDIVVRDKKRFHHFRGGICSCGDYW 851



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 167/616 (27%), Positives = 271/616 (43%), Gaps = 88/616 (14%)

Query: 130 GWHPDEYTFPFVLKACG--ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           G  PD +T P   ++CG   + ++  G  VHA+    G   + FV N+L++MY RC  + 
Sbjct: 61  GIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVE 120

Query: 188 YARQLFDEMFQPGICD----IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
            A ++F      GI D    IVSWN ++AA   SGD   GL LF      V    D  +L
Sbjct: 121 DAEKVFG-----GIPDAARNIVSWNALMAAL--SGDPRRGLELFRDCLVAVGGMVDEATL 173

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
           V  L  CA+LG WS   +      AK  ++          NA+V  Y++ G   DA   F
Sbjct: 174 VTVLPMCAALG-WSETGRAVHGLAAKSGWD----APARVGNALVDMYAKCGELADAERAF 228

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF---CGLEPNVVTLVSLLSGC 360
            +        +VV+W+ ++  Y +      A  + R MQ      +  + +T++S+L  C
Sbjct: 229 PE------APSVVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPAC 282

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           +    L   +E H +T++R L           V NAL+  Y +C  +  A  +F  I  +
Sbjct: 283 SGPTELSRLRELHAFTVRRGLDAASDK-----VPNALVAAYGRCGRLLHADRVFTDI--R 335

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            + V++W  +I +++Q   A  A+ LF QM     L KP+ F++   LMACA    L   
Sbjct: 336 RKTVSSWNTLISAHAQQNTAA-AIELFIQMTNACGL-KPDGFSIGSLLMACADPKHLLHV 393

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID-TARVVFDNLKQRNVVSWTSLMTGYG 539
           +  H ++LRN  E      A+ L+  Y R    +  ARV+FD ++++  V W ++++GY 
Sbjct: 394 KATHGFILRNGLERDTVIRAS-LLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYS 452

Query: 540 MHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYACSH----------------------- 575
            +GL  ++   F +M+  EG     ++    L ACS                        
Sbjct: 453 QNGLPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDP 512

Query: 576 ------------SGMVDQGLKYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
                        G V+    +FD + +++  +S  A      V+ LGR     EAVEL 
Sbjct: 513 FLSSSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGR-----EAVELY 567

Query: 623 EGM---PMEPTPIIWVALLNGCRIHANVELG----ELAANRLLELESEKDGSYTLLSNIY 675
             M    MEP    ++ LL  C     +E G    +   N   ++E + +  Y+ +  + 
Sbjct: 568 GKMRREGMEPDEFTYLGLLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLE-HYSCVIGML 626

Query: 676 ANAGRWKDVARIRSLM 691
           + AGR+ D   + + M
Sbjct: 627 SRAGRFADAVALMAEM 642



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 121/275 (44%), Gaps = 15/275 (5%)

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA--RLAALRFGRQIH 484
           W  ++  +S+ G   DALAL P +    + + P+ FTL  A  +C   R+ A   GRQ+H
Sbjct: 32  WNALLADHSRAGRHADALALLPPLLAASEGIAPDRFTLPPAARSCGFLRVGAAAAGRQVH 91

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHG 542
           A   +       PFV N L+ MY R G ++ A  VF  +    RN+VSW +LM    + G
Sbjct: 92  ALAAKLGLPG-DPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMA--ALSG 148

Query: 543 LGDKAHWAF-DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
              +    F D +   G   D  T + +L  C+  G  + G +    ++ + G  A A  
Sbjct: 149 DPRRGLELFRDCLVAVGGMVDEATLVTVLPMCAALGWSETG-RAVHGLAAKSGWDAPARV 207

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC--RIHANVELGELAANRLLE 659
              +VD+  +   L +A       P  P+ + W  +L        A    G L   ++ E
Sbjct: 208 GNALVDMYAKCGELADAE---RAFPEAPSVVSWNVMLGAYTRNREAGAAFGLLRDMQIKE 264

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             S      T+LS + A +G   +++R+R L   T
Sbjct: 265 HGSVPADEITVLSVLPACSGP-TELSRLRELHAFT 298


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 272/773 (35%), Positives = 423/773 (54%), Gaps = 47/773 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+AAY     P PA  LL  + P   +V  +N LI    R  L   +     +  R G  
Sbjct: 49  LLAAYCRLGGPLPARRLLDEM-PRRNAV-SFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D +++   L AC      R G +VHA+    G  S VFV N+L++MY++C  +  AR++
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACA 251
           FD   +    D VSWN++V+ Y ++G  E  + +FA M  G + +  +  +L + +  C+
Sbjct: 167 FDVAEER---DDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGL--NSFALGSVIKCCS 221

Query: 252 SLGTWSRGKQCGMMEEAKKV----FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                  G+  G M+ A+ V     +     DV   +AM+  Y++ G+  +A ALF+ ++
Sbjct: 222 -------GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 308 QENVKLNVVTWSAVIAGYAQ------RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           + NV    V ++ +IAG+ +      +    EAL ++ ++Q  G++P   T  S+L  C 
Sbjct: 275 EPNV----VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACN 330

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
             G L  GK+ H   IK          +D  + +ALID+Y     ++     F + +PK+
Sbjct: 331 LAGYLEFGKQIHGQVIKYTFQ------EDDFIGSALIDLYFNSGCMEDGFRCFRS-SPKH 383

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
            D+ TWT M+    QN     AL+LF +       +KP+ FT+S  + ACA LA  R G 
Sbjct: 384 -DIVTWTAMVSGCVQNELHEKALSLFHESLGAG--LKPDLFTISSVMNACASLAVARAGE 440

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           QI  +  ++ ++     + N  + MY+RSGD+D A   F  ++  +VVSW+++++ +  H
Sbjct: 441 QIQCFATKSGFDRFT-VMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQH 499

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G    A   FD+M    + P+ +TFL +L ACSH G+VD+GL+Y+++M+K++G+S   +H
Sbjct: 500 GCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKH 559

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
             C+VDLLGRA RL +A   I        P+IW +LL  CRIH ++E G+L ANR++ELE
Sbjct: 560 CTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELE 619

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
                SY +L N+Y +AG     ++ R LMK  GVKK PG SW++ K G  +F  GD++H
Sbjct: 620 PTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSH 679

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P+S  IY  L  ++ RI+ +           ++   E+ +L+  HSEKLA+A G++    
Sbjct: 680 PESSAIYTKLEEMLSRIEKLATTDT------EISKREQ-NLMNCHSEKLAVALGMIHLPQ 732

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             PIR+ KNLR+C DCHS +  IS   N EIILRD  RFHHF++GSC+C  YW
Sbjct: 733 SAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCADYW 785


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/688 (36%), Positives = 387/688 (56%), Gaps = 29/688 (4%)

Query: 151 SRCGSSVHAVICSSGFDSNV--FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
           SR G + HA I  +  D+ +  F+ N L+ MY++ D  + A+ L      P    +V+W 
Sbjct: 22  SRLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLS--LTPNR-SVVTWT 77

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEA 268
            ++A   Q+G     L  F+ M  D  +Q +  +   A  A  SL +   GKQ   +   
Sbjct: 78  ALIAGSVQNGRFTSALFHFSNMRRD-SIQPNDFTFPCAFKASGSLRSPLVGKQVHAL--- 133

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
               +  ++ DV    +    YS+ G  E+A  +F +M + N+     TW+A ++     
Sbjct: 134 --AVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNI----ATWNAYLSNSVLE 187

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   +AL  F + +  G EPN++T  + L+ CA    L LG++ H + ++     D S  
Sbjct: 188 GRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVS-- 245

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
               V N LID Y KC  V  + ++F  I+  N DV +W  MI SY QN     A  +F 
Sbjct: 246 ----VANGLIDFYGKCHQVGCSEIIFSGISKPN-DV-SWCSMIVSYVQNDEEEKACLVFL 299

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +  ++   ++P  F +S  L ACA L+ L  G+ +H   ++      I FV + L+DMY 
Sbjct: 300 RARKEG--IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNI-FVGSALVDMYG 356

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR--KEGLAPDGVTF 566
           + G I+ A   FD + +RN+V+W +++ GY   G  D A   FD+M      +AP+ VTF
Sbjct: 357 KCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTF 416

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           + +L ACS +G V+ G++ F+SM   +GI   AEHYAC+VDLLGRA  +++A + I+ MP
Sbjct: 417 VCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMP 476

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
           + PT  +W ALL   ++    ELG++AA+ L EL+    G++ LLSN++A AGRW++   
Sbjct: 477 IRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATL 536

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R  MK  G+KK  GCSW+        F   D +H ++ +I  +LA L   ++A GY+P 
Sbjct: 537 VRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPD 596

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           TSFAL D+++EEK   ++ HSEK+ALA+G+++   G PIRITKNLRICGDCHSAI FIS 
Sbjct: 597 TSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISG 656

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I+  EII+RD+N FH F++  C+C+ YW
Sbjct: 657 IVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 240/523 (45%), Gaps = 35/523 (6%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPS----HLIAAYVSHNAPSPALSLLQRIS 94
           + S +  QC  L +    H QII + L +  PS    HL+  Y   + P+ A  LL  ++
Sbjct: 13  VESAVSTQCSRLGRA--AHAQII-KTLDNPLPSFIYNHLVNMYSKLDRPNSA-QLLLSLT 68

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P+  SV  W ALI  +V+     +A   F  M R    P+++TFP   KA G L S   G
Sbjct: 69  PNR-SVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VHA+   +G  S+VFV  +   MY++      AR++FDEM +    +I +WN  ++  
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER---NIATWNAYLSNS 184

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
              G  +  L  F     +   + + ++    L+ACA       G+Q         V + 
Sbjct: 185 VLEGRYDDALTAFIEFRHE-GWEPNLITFCAFLNACAGASYLRLGRQLHGF-----VLQS 238

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV   N ++  Y +      +  +F  +     K N V+W ++I  Y Q     +A
Sbjct: 239 GFEADVSVANGLIDFYGKCHQVGCSEIIFSGIS----KPNDVSWCSMIVSYVQNDEEEKA 294

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             VF + +  G+EP    + S+LS CA +  L +GK  H   +K  +        ++ V 
Sbjct: 295 CLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVV------GNIFVG 348

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           +AL+DMY KC S++ A   FD +  +N  + TW  MIG Y+  G A+ A+ LF +M    
Sbjct: 349 SALVDMYGKCGSIEDAERAFDEMPERN--LVTWNAMIGGYAHQGQADMAVTLFDEMTCGS 406

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
             V PN  T  C L AC+R  ++  G +I    +R +Y  + P   +  C++D+  R+G 
Sbjct: 407 HRVAPNYVTFVCVLSACSRAGSVNVGMEIFES-MRGRYG-IEPGAEHYACVVDLLGRAGM 464

Query: 513 IDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHWAFDQM 554
           ++ A      +  R  VS W +L+    M G  +    A D +
Sbjct: 465 VEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNL 507


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/670 (36%), Positives = 388/670 (57%), Gaps = 42/670 (6%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           D N+   N L++ Y +   +  AR++FD M +    ++VSW  +V  Y  +G  +    L
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPER---NVVSWTALVKGYVHNGKVDVAESL 132

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F +M    KV    V L+  L             Q G +++A K++E +  KD ++  +M
Sbjct: 133 FWKMPEKNKVSWT-VMLIGFL-------------QDGRIDDACKLYEMIPDKDNIARTSM 178

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G  + G  ++A  +F +M + +V    +TW+ ++ GY Q     +A  +F  M     
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMP---- 230

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           E   V+  S+L G    G +   +E        +  V    P  ++  NA+I    +   
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEE--------LFEVMPVKP--VIACNAMISGLGQKGE 280

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  AR +FD++  K R+ A+W  +I  + +NG   +AL LF  +  Q + V+P   TL  
Sbjct: 281 IAKARRVFDSM--KERNDASWQTVIKIHERNGFELEALDLF--ILMQKQGVRPTFPTLIS 336

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L  CA LA+L  G+Q+HA ++R Q+++ + +VA+ L+ MY + G++  ++++FD    +
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDVDV-YVASVLMTMYIKCGELVKSKLIFDRFPSK 395

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKY 585
           +++ W S+++GY  HGLG++A   F +M   G   P+ VTF+  L ACS++GMV++GLK 
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKI 455

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           ++SM   FG+     HYAC+VD+LGRA R +EA+E+I+ M +EP   +W +LL  CR H+
Sbjct: 456 YESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHS 515

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
            +++ E  A +L+E+E E  G+Y LLSN+YA+ GRW DVA +R LMK   V+K PGCSW 
Sbjct: 516 QLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWT 575

Query: 706 QGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           + +     F  G   +HP+ + I +IL  L   ++  GY P  S+ALHDVD+EEK + L 
Sbjct: 576 EVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLK 635

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSE+LA+AY +L  + G PIR+ KNLR+C DCH+AI  IS +   EIILRD+NRFHHF+
Sbjct: 636 YHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFR 695

Query: 825 EGSCTCKGYW 834
            G C+CK YW
Sbjct: 696 NGECSCKDYW 705



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 174/413 (42%), Gaps = 87/413 (21%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICD---IVSWNTIVAAYAQSGDAEGGLMLFARM 230
           N  +   +R   +  AR+LFD       CD   I SWN++VA Y            FA +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDS------CDSKSISSWNSMVAGY------------FANL 62

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
                                            M  +A+K+F+ M  ++++SWN +V+GY
Sbjct: 63  ---------------------------------MPRDARKLFDEMPDRNIISWNGLVSGY 89

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
            + G  ++A  +F  M +     NVV+W+A++ GY   G    A  +F +M     E N 
Sbjct: 90  MKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDVAESLFWKMP----EKNK 141

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDV 409
           V+   +L G    G +    +  C   + +       PD D +   ++I    K   VD 
Sbjct: 142 VSWTVMLIGFLQDGRI----DDACKLYEMI-------PDKDNIARTSMIHGLCKEGRVDE 190

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +FD ++   R V TWT M+  Y QN   +DA  +F  M        P    +S   M
Sbjct: 191 AREIFDEMS--ERSVITWTTMVTGYGQNNRVDDARKIFDVM--------PEKTEVSWTSM 240

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
               +  ++ GR   A  L     +      N +I    + G+I  AR VFD++K+RN  
Sbjct: 241 L---MGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           SW +++  +  +G   +A   F  M+K+G+ P   T + +L  C+    +  G
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 23/268 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I+   R      A  LF+ M ++G  P   T   +L  C  L S   G  VHA + 
Sbjct: 299 WQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLV 358

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              FD +V+V + LM MY +C  L  ++ +FD        DI+ WN+I++ YA  G  E 
Sbjct: 359 RCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK---DIIMWNSIISGYASHGLGEE 415

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VK 278
            L +F  M      + + V+ V  LSAC+           GM+EE  K++E M+    VK
Sbjct: 416 ALKVFCEMPLSGSTKPNEVTFVATLSACS---------YAGMVEEGLKIYESMESVFGVK 466

Query: 279 DVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            + + +  MV    R G F +A  +   M    V+ +   W +++   A R H    +  
Sbjct: 467 PITAHYACMVDMLGRAGRFNEAMEMIDSM---TVEPDAAVWGSLLG--ACRTHSQLDVAE 521

Query: 338 FRQMQFCGLEP-NVVTLVSLLSGCASVG 364
           F   +   +EP N  T + L +  AS G
Sbjct: 522 FCAKKLIEIEPENSGTYILLSNMYASQG 549



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 487 VLRNQYEMLIPF-VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           +LR  Y   IP   AN  I   SR G I  AR +FD+   +++ SW S++ GY  + +  
Sbjct: 6   LLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPR 65

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
            A   FD+M    +    +++  L+     +G +D+  K FD M +   +S     +  +
Sbjct: 66  DARKLFDEMPDRNI----ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVS-----WTAL 116

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           V       ++D A  L   MP E   + W  +L G      ++     A +L E+  +KD
Sbjct: 117 VKGYVHNGKVDVAESLFWKMP-EKNKVSWTVMLIGFLQDGRID----DACKLYEMIPDKD 171

Query: 666 G 666
            
Sbjct: 172 N 172


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 325/521 (62%), Gaps = 11/521 (2%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N+ TW+ +I GYA+  +   AL+++RQM    +EP+  T   LL   A +  +  G++ H
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVH 163

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              I+            + V N L+ MYA C   + A  +F+ +A   R++ TW  +I  
Sbjct: 164 SIAIRNGFE------SLVFVQNTLVHMYAACGHAESAHKLFELMA--ERNLVTWNSVING 215

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+ NG  N+AL LF +M  +   V+P+ FT+   L ACA L AL  GR+ H Y+++   +
Sbjct: 216 YALNGRPNEALTLFREMGLRG--VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 273

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +    N L+D+Y++ G I  A  VFD +++++VVSWTSL+ G  ++G G +A   F +
Sbjct: 274 GNL-HAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE 332

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           + ++GL P  +TF+ +LYACSH GMVD+G  YF  M +E+GI  + EHY C+VDLLGRA 
Sbjct: 333 LERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAG 392

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            + +A E I+ MPM+P  ++W  LL  C IH ++ LGE+A  +LL+LE +  G Y LLSN
Sbjct: 393 LVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSN 452

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA+  RW DV ++R  M   GVKK PG S V+ +     F +GDR+HPQ+++IY  LA 
Sbjct: 453 LYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAE 512

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           + + +K  GYVP  S  L D+++EEK   L  HSEK+A+A+ ++ TA G PIR+ KNLR+
Sbjct: 513 ITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRV 572

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH AI  IS + + EI++RD +RFHHFK+G C+CK YW
Sbjct: 573 CADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 218/441 (49%), Gaps = 40/441 (9%)

Query: 14  KTPLTLNHLFTNIKLFSVTTTPCIKI-TSLLLRQCKSL----TQVYLIHQQIIVQNLTHV 68
           + PL   H       F+++T+ C +   S +L++C +L           +QI   ++ H 
Sbjct: 8   RQPLIPTHSPRKHFSFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHG 67

Query: 69  PP-------SHLIAAYVSHNAP-SPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120
            P        +LI   +S  +P S A  +  +I  +P ++F WN +IR       P  A 
Sbjct: 68  VPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQ-NP-NIFTWNTMIRGYAESENPMPAL 125

Query: 121 RLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMY 180
            L+ QM      PD +T+PF+LKA  +L   R G  VH++   +GF+S VFV N L+ MY
Sbjct: 126 ELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMY 185

Query: 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240
           A C     A +LF+ M +    ++V+WN+++  YA +G     L LF  M G   V+ DG
Sbjct: 186 AACGHAESAHKLFELMAER---NLVTWNSVINGYALNGRPNEALTLFREM-GLRGVEPDG 241

Query: 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---DVVSWNAMVTGYSRIGSFE 297
            ++V+ LSACA LG  + G++  +          +KV    ++ + NA++  Y++ GS  
Sbjct: 242 FTMVSLLSACAELGALALGRRAHVY--------MVKVGLDGNLHAGNALLDLYAKCGSIR 293

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A  +F +M +++V    V+W+++I G A  G G EAL++F++++  GL P+ +T V +L
Sbjct: 294 QAHKVFDEMEEKSV----VSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVL 349

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C+  G +  G +      KR+    G  P  +     ++D+  +   V  A      +
Sbjct: 350 YACSHCGMVDEGFD----YFKRMKEEYGIVP-KIEHYGCMVDLLGRAGLVKQAHEFIQNM 404

Query: 418 APKNRDVATWTVMIGSYSQNG 438
            P   +   W  ++G+ + +G
Sbjct: 405 -PMQPNAVVWRTLLGACTIHG 424



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 47/269 (17%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI-DMYSRSGDIDTARVVFDNLKQR 526
           L++CA  +  +F RQIHA+ +R+   +  P +   LI  + S    +  A  +F  ++  
Sbjct: 46  LLSCAS-SKFKF-RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNP 103

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-----------H 575
           N+ +W +++ GY        A   + QM    + PD  T+  LL A +           H
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVH 163

Query: 576 SGMVDQGLKYF----DSMSKEFGISARAEHYACIVDLLGRAN---------------RLD 616
           S  +  G +      +++   +     AE    + +L+   N               R +
Sbjct: 164 SIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPN 223

Query: 617 EAVELIEGMPM---EPTPIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSY-- 668
           EA+ L   M +   EP     V+LL+ C      ELG LA  R   +   K   DG+   
Sbjct: 224 EALTLFREMGLRGVEPDGFTMVSLLSAC-----AELGALALGRRAHVYMVKVGLDGNLHA 278

Query: 669 -TLLSNIYANAGRWKDVARIRSLMKHTGV 696
              L ++YA  G  +   ++   M+   V
Sbjct: 279 GNALLDLYAKCGSIRQAHKVFDEMEEKSV 307


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 275/750 (36%), Positives = 404/750 (53%), Gaps = 39/750 (5%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQIIVQ--NLTHVPPSHLIAA 76
           L    K+    T P       +++ C  L  V L   +H +I      L     S LI  
Sbjct: 132 LLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKF 191

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           Y  +     A  L  R+ PS   V W N ++   V+    DNA  +F++M R   +P+  
Sbjct: 192 YSENGCIHDARYLFDRM-PSKDGVLW-NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSV 249

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TF  VL  C        GS +H ++ SSG + +  V N L+AMYA+C  L  AR+LFD M
Sbjct: 250 TFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMM 309

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            +    D+V+WN +++ Y Q+G  +    LF  M    +++ D ++  + L   +   T 
Sbjct: 310 PKT---DLVTWNGMISGYVQNGFMDEASCLFHEMI-SARMKPDSITFSSFLPLLSEGATL 365

Query: 257 SRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
            +GK+  C ++     +       DV   +A++  Y +    E A    +K+  +   ++
Sbjct: 366 RQGKEIHCYIIRNGVSL-------DVFLKSALIDIYFKCRDVEMA----RKIFDQRTPVD 414

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           +V  +A+I+GY   G  + AL++FR +    +  N VTL S+L  CA + AL LGKE H 
Sbjct: 415 IVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHG 474

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           + +K        H     V +A++DMYAKC  +D+A   F  I+ K  D   W  MI S 
Sbjct: 475 HILKN------GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK--DAVCWNSMITSC 526

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           SQNG   +A+ LF QM       K +  ++S AL ACA L AL +G++IHA+++R  +  
Sbjct: 527 SQNGKPEEAIDLFRQMGMAG--TKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRS 584

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            + F  + LIDMYS+ G++D A  VFD ++++N VSW S++  YG HG    +   F  M
Sbjct: 585 DL-FAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGM 643

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
             +G+ PD VTFL ++ AC H+G VD+G+ YF  M++E GI AR EHYAC+VDL GRA R
Sbjct: 644 LGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGR 703

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L+EA  +I  MP  P   +W  LL  CR+H NVEL E+A+  L +L+ +  G Y LLSN+
Sbjct: 704 LNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNV 763

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           +ANAG+W+ V +IRSLMK  GV+K PGCSW+     T  F   DR+HPQS +IY +L  L
Sbjct: 764 HANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNL 823

Query: 735 VQRIKAMGYVPQTSFALH----DVDDEEKG 760
              ++  GYVPQ    +H     +   EKG
Sbjct: 824 FLELRKEGYVPQLYLPMHPQTMGLQSSEKG 853



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 182/681 (26%), Positives = 302/681 (44%), Gaps = 134/681 (19%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +L+ C     L+Q    H Q++V  + +  +  + L+  YV   A   A ++  ++    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR--- 108

Query: 98  FSVFW----WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
               W    WN +IR    +   D A   + +M+  G  PD+YTFP+V+KACG L S   
Sbjct: 109 ---LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVAL 165

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VH  I   GF+ +VFV ++L+  Y+    +  AR LFD M      D V WN ++  
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK---DGVLWNVMLNG 222

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------ 261
           Y ++GD +    +F  M    +   + V+    LS CAS    + G Q            
Sbjct: 223 YVKNGDWDNATGVFMEMR-RTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEM 281

Query: 262 --------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                         CG + +A+++F+ M   D+V+WN M++GY + G  ++A  LF +M 
Sbjct: 282 DSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMI 341

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
              +K                                   P+ +T  S L   +    L 
Sbjct: 342 SARMK-----------------------------------PDSITFSSFLPLLSEGATLR 366

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            GKE HCY I+  +S+      D+ + +ALID+Y KC+ V++AR +FD   P   D+   
Sbjct: 367 QGKEIHCYIIRNGVSL------DVFLKSALIDIYFKCRDVEMARKIFDQRTPV--DIVVC 418

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T MI  Y  NG  N+AL +F  + Q+   ++ N+ TL+  L ACA LAAL  G+++H ++
Sbjct: 419 TAMISGYVLNGMNNNALEIFRWLLQER--MRANSVTLASVLPACAGLAALTLGKELHGHI 476

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           L+N +     +V + ++DMY++ G +D A   F  +  ++ V W S++T    +G  ++A
Sbjct: 477 LKNGHGGSC-YVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEA 535

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYAC---------------------------------- 573
              F QM   G   D V+    L AC                                  
Sbjct: 536 IDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDM 595

Query: 574 -SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM---PMEP 629
            S  G +D   + FD+M ++  +S     +  I+   G   RL +++ L  GM    ++P
Sbjct: 596 YSKCGNLDLACRVFDTMEEKNEVS-----WNSIIAAYGNHGRLKDSLNLFHGMLGDGIQP 650

Query: 630 TPIIWVALLNGCRIHANVELG 650
             + ++A+++ C     V+ G
Sbjct: 651 DHVTFLAIISACGHAGQVDEG 671


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 56/713 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H++I + G   +V     L+A YA     + +  +F  +  P   ++  WN+I+ A   
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPS-NNVYLWNSIIRALTH 92

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +G     L L++  T  +++Q D  +  + ++ACA L  +   K         +V +   
Sbjct: 93  NGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMAKSI-----HDRVLDMGF 146

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             D+   NA++  Y R    + A  +F++M   +V    V+W+++I+GY   G+ +EAL+
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDV----VSWNSLISGYNANGYWNEALE 202

Query: 337 VFRQ-----MQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
           ++ Q     M+     +P+++T+ S+L  C  +G L  GK  H Y I         +  D
Sbjct: 203 IYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT------SGYECD 256

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
               N LI+MYAKC ++  ++ +F  +  K +D  +W  MI  Y QNG   D+L +F  M
Sbjct: 257 TTASNILINMYAKCGNLLASQEVFSGM--KCKDSVSWNSMINVYIQNGKMGDSLKVFENM 314

Query: 451 FQQDKL-----------------------------VKPNAFTLSCALMACARLAALRFGR 481
             +D +                             V P+  T+   L  C+ LAA R G+
Sbjct: 315 KARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGK 374

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           +IH  + +   E  +P V N LI+MYS+ G +  +  VF  +K ++VV+WT+L++  GM+
Sbjct: 375 EIHGCIFKLGLESDVP-VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMY 433

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G G KA  AF +M   G+ PD V F+ +++ACSHSG+V++GL YF  M K++ I  R EH
Sbjct: 434 GEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 493

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YAC+VDLL R+  LD+A + I  MP++P   IW ALL+ CR+  + E+ E  + R++EL 
Sbjct: 494 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELN 553

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            +  G Y L+SNIYA  G+W  V  IR  +K  G+KK PGCSW++ +     F  G +  
Sbjct: 554 PDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFF 613

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
            Q +++ ++L  L   +   GY+    F LHD+D++EK D+L  HSE+LA+A+G+L T P
Sbjct: 614 EQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKP 673

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GTP+++ KNLR+C DCH+   +IS I+  E+++RD+NRFH FK+G+C+C  YW
Sbjct: 674 GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 156/565 (27%), Positives = 267/565 (47%), Gaps = 62/565 (10%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           L    + TQ++ +H  II   L H  +  + LIA Y     P+ + S+ +  SPS  +V+
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSN-NVY 81

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            WN++IR      L   A  L+ +  R    PD YTFP V+ AC  L       S+H  +
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 141

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              GF S++++ NAL+ MY R + L  AR++F+EM    + D+VSWN++++ Y  +G   
Sbjct: 142 LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM---PLRDVVSWNSLISGYNANGYWN 198

Query: 222 GGL-------MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
             L        LF  M    K   D +++ + L AC  LG    GK              
Sbjct: 199 EALEIYYQSIKLFMEMVNQFK--PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECD 256

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       +CG +  +++VF  MK KD VSWN+M+  Y + G   D+  +F+ M+ 
Sbjct: 257 TTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKA 316

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                +++TW+ +IA        +  L +  +M+  G+ P++ T++S+L  C+ + A   
Sbjct: 317 R----DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 372

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GKE H    K  L        D+ V N LI+MY+KC S+  +  +F  +  K +DV TWT
Sbjct: 373 GKEIHGCIFKLGLE------SDVPVGNVLIEMYSKCGSLRNSFQVFKLM--KTKDVVTWT 424

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I +    G    A+  F +M  +   + P+       + AC+    +  G   + + +
Sbjct: 425 ALISACGMYGEGKKAVRAFGEM--EAAGIVPDHVAFVAIIFACSHSGLVEEGLN-YFHRM 481

Query: 489 RNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGD 545
           +  Y+ + P + +  C++D+ SRS  +D A     ++  +   S W +L++   M G  +
Sbjct: 482 KKDYK-IEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 540

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLL 570
            A    +++ +  L PD   + VL+
Sbjct: 541 IAERVSERIIE--LNPDDTGYYVLV 563


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 393/681 (57%), Gaps = 29/681 (4%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           + +HA++  S    N+F   +L A YAR   L  A            C I +WN ++AA 
Sbjct: 32  TRLHALLVVSS-SQNLF--PSLAAAYARVGALDAAESTLAASPSSRSC-IPAWNALLAAR 87

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           +++G     L +F  +    +   D  +   AL+ACA LG     +   +     + F  
Sbjct: 88  SRAGSPGAALRVFRALPSSAR--PDSTTFTLALTACARLGDLDAAEAVRV-----RAFAA 140

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
              +DV   +A++  YSR G+  DA  +F  M +++     V WS ++AG+   G   EA
Sbjct: 141 GYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDH----VAWSTMVAGFVSAGRPVEA 196

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L ++ +M+  G+  + V +V ++  C   G   +G   H   ++  + +D      +++ 
Sbjct: 197 LGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMD------VVIA 250

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L+DMYAK    DVAR +F  +  +N    +W  +I  ++QNG A++AL LF +M    
Sbjct: 251 TSLVDMYAKNGHFDVARQVFRMMPYRN--AVSWNALISGFAQNGHADEALDLFREMSTSG 308

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDI 513
             ++P++  L  AL+ACA +  L+ G+ IH ++LR  +++ ++      ++DMYS+ G +
Sbjct: 309 --LQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCIL---GTAVLDMYSKCGSL 363

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           ++AR +F+ L  R++V W +++   G HG G  A   F ++ + G+ PD  TF  LL A 
Sbjct: 364 ESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL 423

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SHSG+V++G  +FD M  EFGI    +H  C+VDLL R+  ++EA E++  M  EPT  I
Sbjct: 424 SHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPI 483

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           WVALL+GC  +  +ELGE  A ++LE + E  G   L+SN+YA A +W  V  IR LMK 
Sbjct: 484 WVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKD 543

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
           +G KK PG S ++       F + D++HPQ Q+I ++++ L   ++ MGYVP+T F  HD
Sbjct: 544 SGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHD 603

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           +D++ K  LL  HSE+LA+A+G+L T+PGT + I KNLR+CGDCH AI +IS I++ EI+
Sbjct: 604 LDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIV 663

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD+ RFHHFK+G+C+C  YW
Sbjct: 664 VRDAKRFHHFKDGACSCGDYW 684



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 248/488 (50%), Gaps = 37/488 (7%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           +H  ++V +  ++ PS L AAY    A   A S L     S   +  WNAL+    R   
Sbjct: 34  LHALLVVSSSQNLFPS-LAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGS 92

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P  A R+F + +     PD  TF   L AC  L       +V     ++G+  +VFVC+A
Sbjct: 93  PGAALRVF-RALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSA 151

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+ +Y+RC  +  A ++FD M +    D V+W+T+VA +  +G     L +++RM  +  
Sbjct: 152 LLHVYSRCGAMGDAIRVFDGMPRK---DHVAWSTMVAGFVSAGRPVEALGMYSRMR-EHG 207

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           V  D V +V  + AC    T +   + G     + +   M++ DVV   ++V  Y++ G 
Sbjct: 208 VAEDEVVMVGVIQAC----TLTGNTRMGASVHGRFLRHGMRM-DVVIATSLVDMYAKNGH 262

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
           F+ A  +F+ M       N V+W+A+I+G+AQ GH  EALD+FR+M   GL+P+   LVS
Sbjct: 263 FDVARQVFRMMPYR----NAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVS 318

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  CA VG L LGK  H + ++R+           ++  A++DMY+KC S++ AR +F+
Sbjct: 319 ALLACADVGFLKLGKSIHGFILRRL-------EFQCILGTAVLDMYSKCGSLESARKLFN 371

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            ++  +RD+  W  MI     +G  +DALALF ++ +    +KP+  T +  L A +   
Sbjct: 372 KLS--SRDLVLWNAMIACCGTHGCGHDALALFQELNETG--IKPDHATFASLLSALSHSG 427

Query: 476 ALR-----FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
            +      F R I  + +    +  +     C++D+ +RSG ++ A  +  ++     + 
Sbjct: 428 LVEEGKFWFDRMITEFGIEPTEKHCV-----CVVDLLARSGLVEEANEMLASMHTEPTIP 482

Query: 531 -WTSLMTG 537
            W +L++G
Sbjct: 483 IWVALLSG 490


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 277/780 (35%), Positives = 414/780 (53%), Gaps = 42/780 (5%)

Query: 57  HQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLP 116
           H+ I   NL       +++AY S +   PA   L   SP   +  W   +   A   R  
Sbjct: 71  HKNIFSLNL-------ILSAY-SSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTS 122

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACG-ELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           D A  LF  M+  G  PD  T   VL   G  +PS      +H      G D++VFVCN 
Sbjct: 123 D-ALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS------LHPFAIKFGLDTHVFVCNT 175

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+  Y +   L+ AR++F EM      D V++N ++   ++ G     L LFA M     
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDK---DAVTYNAMMMGCSKEGLHTQALQLFAAMR-RAG 231

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           +     +  + L+  A +     G Q   +     V     V +V   N+++  YS+   
Sbjct: 232 IPATHFTFSSILTVAAGMAHLLLGHQVHAL-----VLRSTSVLNVFVNNSLLDFYSKCDC 286

Query: 296 FEDAFALFKKM-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
            +D   LF +M  ++NV  NV+     IA YA        L +FR+MQ  G +  V+   
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVI-----IAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           ++LS   S+  + +GK+ H       L + G   +DL+  NALIDMY+KC  +D A+  F
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQ-----LVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNF 395

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
              + K+    +WT +I  Y QNG   +AL LF  M +    ++P+  T S  + A + L
Sbjct: 396 SNRSEKS--AISWTALITGYVQNGQHEEALQLFSDMRRAG--LRPDRATFSSIIKASSSL 451

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           A +  GRQ+H+Y++R+ Y+  + F  + L+DMY++ G +D A   FD + +RN +SW ++
Sbjct: 452 AMIGLGRQLHSYLIRSGYKSSV-FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 510

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++ Y  +G    A   F+ M   G  PD VTFL +L ACSH+G+ D+ +KYF  M  ++ 
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYS 570

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           IS   EHYAC++D LGR     +  +++  MP +  PIIW ++L+ CRIH N EL  +AA
Sbjct: 571 ISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAA 630

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
           ++L  +E      Y +LSNIYA AG+W+D A ++ +M+  GV+K  G SWV+ K+   +F
Sbjct: 631 DKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSF 690

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
              D T P   +I + L  L + +   GY P  + ALH VD E K + L  HSE+LA+A+
Sbjct: 691 ASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAF 750

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            ++ T  GTPIRI KNL  C DCH+ I  IS I+N +II+RDS RFHHFK+G C+C  YW
Sbjct: 751 ALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/772 (34%), Positives = 397/772 (51%), Gaps = 80/772 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I+AY +      A  L    +P   S+ W ++L+    +        R F QM   G  
Sbjct: 74  MISAYANLGNLVEARKLFNE-TPIKNSITW-SSLVSGYCKNGCEVEGLRQFSQMWSDGQK 131

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P +YT   VL+AC  L     G  +H        ++N+FV   L+ MY++C  L  A  L
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  +  P   + V W  ++  YAQ+G++   +  F  M     ++ +  +  + L+AC S
Sbjct: 192 FFSL--PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQ-GMESNHFTFPSILTACTS 248

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN----------AMVTGYSRIGSFEDAFAL 302
           +  ++ G+Q               V   + W+          A+V  Y++ G    A  +
Sbjct: 249 ISAYAFGRQ---------------VHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMI 293

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
              M  ++V    V W+++I G    G+  EAL +F +M    +  +  T  S+L   AS
Sbjct: 294 LDTMEIDDV----VCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLAS 349

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
              L +G+  H  TIK       +      V NAL+DMYAK  ++  A  +F+ I  K  
Sbjct: 350 CKNLKIGESVHSLTIKTGFDACKT------VSNALVDMYAKQGNLSCALDVFNKILDK-- 401

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           DV +WT ++  Y  NG    AL LF  M  +   V  + F ++C   ACA L  + FGRQ
Sbjct: 402 DVISWTSLVTGYVHNGFHEKALQLFCDM--RTARVDLDQFVVACVFSACAELTVIEFGRQ 459

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +HA  +++    L+    N LI MY++ G ++ A  VFD+++ RNV+SWT+++ GY  +G
Sbjct: 460 VHANFIKSSAGSLLS-AENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNG 518

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
           L                                   V+ G  YF+SM K +GI   ++HY
Sbjct: 519 L-----------------------------------VETGQSYFESMEKVYGIKPASDHY 543

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           AC++DLLGRA +++EA  L+  M +EP   IW +LL+ CR+H N+ELGE A   L++LE 
Sbjct: 544 ACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEP 603

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
                Y LLSN+++ AGRW+D A IR  MK  G+ K PG SW++ K    TF   DR+HP
Sbjct: 604 SNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHP 663

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
            + +IY  +  ++  IK  G+VP  +FAL D+D+E K   L  HSEKLA+A+G+LT A G
Sbjct: 664 LAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKG 723

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            PIRI KNLR+CGDCHSA+ +IS I    IILRD N FHHF EG C+C  +W
Sbjct: 724 APIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 202/378 (53%), Gaps = 16/378 (4%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++EA+K+F++M  +D  +WN M++ Y+ +G+  +A  LF     E    N +TWS+++
Sbjct: 51  GRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLF----NETPIKNSITWSSLV 106

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +GY + G   E L  F QM   G +P+  TL S+L  C+++  L  GK  HCY IK  L 
Sbjct: 107 SGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLE 166

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  ++ V   L+DMY+KCK +  A  +F ++ P  ++   WT M+  Y+QNG +  
Sbjct: 167 A------NIFVATGLVDMYSKCKCLLEAEYLFFSL-PDRKNYVQWTAMLTGYAQNGESLK 219

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+  F +M  Q   ++ N FT    L AC  ++A  FGRQ+H  ++ + +   + +V + 
Sbjct: 220 AIQCFKEMRNQG--MESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV-YVQSA 276

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+DMY++ GD+ +AR++ D ++  +VV W S++ G   HG  ++A   F +M    +  D
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
             T+  +L + +    +  G +   S++ + G  A       +VD+  +   L  A+++ 
Sbjct: 337 DFTYPSVLKSLASCKNLKIG-ESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVF 395

Query: 623 EGMPMEPTPIIWVALLNG 640
             + ++   I W +L+ G
Sbjct: 396 NKI-LDKDVISWTSLVTG 412


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/568 (41%), Positives = 347/568 (61%), Gaps = 30/568 (5%)

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A+ +F++M  +D+ SWN M+TGY R    + A ALF++M + ++    V+W+A+++GYAQ
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI----VSWNAMLSGYAQ 69

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G   EA ++F +M       N ++   LL+     G +           KR+     S 
Sbjct: 70  NGFVDEAREIFYKMPL----KNGISWNGLLAAYVQNGRI--------EDAKRLFE---SK 114

Query: 388 PD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            D  L+  N L+  + + +     R +FD +    RD  +W+ MI  YSQNG + +AL  
Sbjct: 115 MDWTLVSWNCLMGGFVRKR-----RNLFDNMP--QRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F +M  Q    + N  + +CAL  C+ +AAL  GRQ+H  +++  Y+    +V N L+ M
Sbjct: 168 FVEM--QRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGW-YVGNALLAM 224

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y + G ID AR  F  + +++VVSW +++ GY  HG G++A   F+ M+  G+ PD  T 
Sbjct: 225 YCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATM 284

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           + +L ACSH+G+VDQG +YF SM++++GI+A+  HY C+VDLLGRA +L+EA  L++ MP
Sbjct: 285 VSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMP 344

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
            EP    W ALL   RIH N ELGE AA  + E+E    G Y LLS +YA +GRW D  +
Sbjct: 345 FEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGK 404

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R  M++ GVKK PG SW++ +    TF VGD +HP + KIY  L  +  ++K  GY+  
Sbjct: 405 MRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISS 464

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           T+   HDV++EEK  +L  HSEKLA+AYGIL    G PIR+ KNLR+C DCH+AI +IS 
Sbjct: 465 TNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISK 524

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I+   IILRD++RFH+F+ GSC+C+ +W
Sbjct: 525 IVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 192/386 (49%), Gaps = 42/386 (10%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + ++F  N ++  Y R   L  AR LF+ M +    DIVSWN +++ YAQ+G  +    +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPER---DIVSWNAMLSGYAQNGFVDEAREI 79

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F +M        +G+S    L+A           Q G +E+AK++FE      +VSWN +
Sbjct: 80  FYKMP-----LKNGISWNGLLAAYV---------QNGRIEDAKRLFESKMDWTLVSWNCL 125

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G+ R         LF  M Q     + ++WSA+IAGY+Q G   EAL  F +MQ    
Sbjct: 126 MGGFVR-----KRRNLFDNMPQR----DSISWSAMIAGYSQNGCSEEALHFFVEMQRDCE 176

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
             N  +    LS C+++ AL LG++ HC  +K        +     V NAL+ MY KC S
Sbjct: 177 RLNRSSFTCALSTCSNIAALELGRQLHCRLVK------AGYQTGWYVGNALLAMYCKCGS 230

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +D AR  F  I  K  DV +W  MI  Y+++G   +AL +F  M  +   ++P+  T+  
Sbjct: 231 IDEARDAFQEILEK--DVVSWNTMIHGYARHGFGEEALTVFELM--KTTGIRPDDATMVS 286

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA-NCLIDMYSRSGDIDTARVVFDNLK- 524
            L AC+    +  G + + Y +   Y +    V   C++D+  R+G ++ A+ +  N+  
Sbjct: 287 VLAACSHAGLVDQGSE-YFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPF 345

Query: 525 QRNVVSWTSLMTGYGMHG---LGDKA 547
           + +  +W +L+    +HG   LG+KA
Sbjct: 346 EPDAATWGALLGASRIHGNTELGEKA 371



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 172/372 (46%), Gaps = 46/372 (12%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM-MRRGW 131
           ++  YV +     A +L +R+      +  WNA++    +    D A  +F +M ++ G 
Sbjct: 32  MLTGYVRNRDLKTARALFERMPER--DIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGI 89

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             +     +V    G +  ++        +  S  D  +   N LM  + R       R 
Sbjct: 90  SWNGLLAAYVQN--GRIEDAK-------RLFESKMDWTLVSWNCLMGGFVR-----KRRN 135

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LFD M Q    D +SW+ ++A Y+Q+G +E  L  F  M  D + + +  S   ALS C+
Sbjct: 136 LFDNMPQR---DSISWSAMIAGYSQNGCSEEALHFFVEMQRDCE-RLNRSSFTCALSTCS 191

Query: 252 SLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSW---NAMVTGYSRIGSFEDAFALFKKM 306
           ++     G+Q  C +++   +            W   NA++  Y + GS ++A   F   
Sbjct: 192 NIAALELGRQLHCRLVKAGYQT----------GWYVGNALLAMYCKCGSIDEARDAF--- 238

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            QE ++ +VV+W+ +I GYA+ G G EAL VF  M+  G+ P+  T+VS+L+ C+  G +
Sbjct: 239 -QEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLV 297

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G E + Y++ R   +       L+    ++D+  +   ++ A+ +   + P   D AT
Sbjct: 298 DQGSE-YFYSMNRDYGITAK----LVHYTCMVDLLGRAGQLEEAQNLMKNM-PFEPDAAT 351

Query: 427 WTVMIGSYSQNG 438
           W  ++G+   +G
Sbjct: 352 WGALLGASRIHG 363



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           +I  Y R+   D AR +FD + +R++ SW  ++TGY  +     A   F++M +     D
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPER----D 56

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            V++  +L   + +G VD+  + F  M  + GIS     +  ++    +  R+++A  L 
Sbjct: 57  IVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGIS-----WNGLLAAYVQNGRIEDAKRLF 111

Query: 623 EGMPMEPTPIIWVALLNG 640
           E   M+ T + W  L+ G
Sbjct: 112 ES-KMDWTLVSWNCLMGG 128


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/744 (34%), Positives = 409/744 (54%), Gaps = 40/744 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  WN++I           AF +F +M + G   D  TF  +L AC    + + G  V 
Sbjct: 225 SVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVR 284

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  + F+ ++FV  AL+ MYARC +   A Q+F  M Q    ++++W+ I+ A+A  G
Sbjct: 285 ESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQT---NLITWSAIITAFADHG 341

Query: 219 DAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
                L  F  M   G +  +   +SL+N  +  + L   SR            +     
Sbjct: 342 HCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR---------IHLLITEHG 392

Query: 277 VKDVVSW-NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           + D  +  NA+V  Y R  S +DA  +F ++   N+    ++W+++I  Y Q     +AL
Sbjct: 393 LDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNL----ISWNSMIGIYVQCERHDDAL 448

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV-----LSVDGSHPDD 390
            +FR MQ  G++P+ V  +++L  C ++G       +H  T K V      S  G  P  
Sbjct: 449 QLFRTMQQQGIQPDRVNFMTILGAC-TIG-------SHGRTRKLVHQCVEESGLGGSP-- 498

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
            +V  +L++MYAK   +DVA V+   +    + +  W V+I  Y+ +G + +AL  + ++
Sbjct: 499 -LVQTSLVNMYAKAGELDVAEVILQEM--DEQQITAWNVLINGYALHGRSREALEAYQKL 555

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
             Q + +  +  T    L AC    +L  G+ IH+  +    +  +  V N L +MYS+ 
Sbjct: 556 --QLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDV-IVKNALTNMYSKC 612

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G ++ AR +FD++  R+ VSW  ++  Y  HG  ++      +M +EG+  +G+TF+ +L
Sbjct: 613 GSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVL 672

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            +CSH+G++ +G +YF S+  + GI  + EHY C+VDLLGRA +L EA + I  MP+EP 
Sbjct: 673 SSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPG 732

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
            + W +LL  CR+  +++ G+LAA +LLEL+     +  +LSNIY+  G WK+ A++R  
Sbjct: 733 IVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRA 792

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           M    VKK PG S +Q K     F V D +HP++ +IY+ +  L   ++  GYVP T   
Sbjct: 793 MASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMV 852

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHDVD+E+K  LL  HSEKLA+A+G+++T   + + I KNLR+C DCH+A  FIS I   
Sbjct: 853 LHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGR 912

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EI++RD++RFHHF++GSC+CK YW
Sbjct: 913 EIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 170/667 (25%), Positives = 290/667 (43%), Gaps = 111/667 (16%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN +I      +    A  LF  M+  G  P+  T   VL +CG     R G  VH
Sbjct: 22  NVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVH 81

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A+    GF  N  V  AL+ MY +C TL  A+ +F+EM +    ++V+WN ++  Y+  G
Sbjct: 82  ALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEK---NVVTWNAMLGVYSLQG 138

Query: 219 DA-EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------- 260
              +  + LF RM  +  V+ + ++ +N L++        +GK                 
Sbjct: 139 CCWKLAVELFTRMLLE-GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFV 197

Query: 261 ---------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                    +CG + +A+KVF+ M  + V +WN+M++ YS      +AF +F++M+QE  
Sbjct: 198 NTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGE 257

Query: 312 KLNVVTW-----------------------------------SAVIAGYAQRGHGHEALD 336
           + + VT+                                   +A+I  YA+     +A  
Sbjct: 258 RCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQ 317

Query: 337 VFRQM-------------------------------QFCGLEPNVVTLVSLLSGCASVGA 365
           VF +M                               Q  G+ PN VT +SLL+G  +   
Sbjct: 318 VFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG 377

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L      H      +L  +    D   + NAL+++Y +C+S D AR +FD +   N  + 
Sbjct: 378 LEELSRIH------LLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPN--LI 429

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  MIG Y Q    +DAL LF  M QQ   ++P+       L AC   +  R  + +H 
Sbjct: 430 SWNSMIGIYVQCERHDDALQLFRTMQQQG--IQPDRVNFMTILGACTIGSHGRTRKLVHQ 487

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            V  +      P V   L++MY+++G++D A V+   + ++ + +W  L+ GY +HG   
Sbjct: 488 CVEESGLGG-SPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSR 546

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A  A+ +++ E +  D VTF+ +L AC+ S  + +G K   S + E G+ +       +
Sbjct: 547 EALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNAL 605

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
            ++  +   ++ A  + + MP+  + + W  +L     H   E   L   R +E E  K 
Sbjct: 606 TNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESE-EVLKLIRKMEQEGVKL 663

Query: 666 GSYTLLS 672
              T +S
Sbjct: 664 NGITFVS 670



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 203/411 (49%), Gaps = 23/411 (5%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           YSR GS  DA A F K+R  NV    V+W+ +I+ Y+      EAL +F  M   G+ PN
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNV----VSWNVMISAYSSYKSFQEALALFHAMLLEGVAPN 57

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            +TLV++L+ C S   L  G   H  +++R          + +V  AL++MY KC ++  
Sbjct: 58  AITLVAVLNSCGSFRELRDGILVHALSLER------GFFQNTLVATALLNMYGKCGTLLD 111

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGA-NDALALFPQMFQQDKLVKPNAFTLSCAL 468
           A+ +F+ +A KN  V TW  M+G YS  G     A+ LF +M  +   VK N  T    L
Sbjct: 112 AQSVFEEMAEKN--VVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG--VKANVITFLNVL 167

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            +     ALR G+ IH+ V  +++ + + FV   L++ Y++ G +  AR VFD +  R+V
Sbjct: 168 NSVVDPDALRKGKFIHSCVRESEHSLDV-FVNTALVNTYTKCGSLTDARKVFDGMPCRSV 226

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
            +W S+++ Y +     +A + F +M++EG   D VTFL +L AC +   +  G    +S
Sbjct: 227 GTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRES 286

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           +S E            ++ +  R    ++A ++  G   +   I W A++     H +  
Sbjct: 287 IS-ETSFELDLFVGTALITMYARCRSPEDAAQVF-GRMKQTNLITWSAIITAFADHGHC- 343

Query: 649 LGE-LAANRLLELESEKDGSYTLLS--NIYANAGRWKDVARIRSLMKHTGV 696
            GE L   R+++ E       T +S  N +      ++++RI  L+   G+
Sbjct: 344 -GEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MYSR G +  A   F  ++ RNVVSW  +++ Y  +    +A   F  M  EG+AP+ +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
            + +L +C     +  G+    ++S E G          ++++ G+   L +A  + E M
Sbjct: 61  LVAVLNSCGSFRELRDGI-LVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 626 PMEPTPIIWVAL-----LNGCRIHANVEL 649
             E   + W A+     L GC     VEL
Sbjct: 120 A-EKNVVTWNAMLGVYSLQGCCWKLAVEL 147


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/690 (36%), Positives = 380/690 (55%), Gaps = 41/690 (5%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +HA++   G   N F+ N  + +Y++C  L Y  +LFD+M Q    ++VSW +I+  
Sbjct: 94  GKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQR---NMVSWTSIITG 150

Query: 214 YAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGM 264
           +A +   +  L  F   R+ G++  Q    +L + L AC SLG    G Q       CG 
Sbjct: 151 FAHNSRFQEALSSFCQMRIEGEIATQ---FALSSVLQACTSLGAIQFGTQVHCLVVKCGF 207

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
             E   +F    + D+         YS+ G   DA   F++M  ++     V W+++I G
Sbjct: 208 GCE---LFVGSNLTDM---------YSKCGELSDACKAFEEMPCKDA----VLWTSMIDG 251

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           + + G   +AL  + +M    +  +   L S LS C+++ A   GK  H   +K     +
Sbjct: 252 FVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYE 311

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                   + NAL DMY+K   +  A  +F  I      + + T +I  Y +      AL
Sbjct: 312 ------TFIGNALTDMYSKSGDMVSASNVFQ-IHSDCISIVSLTAIIDGYVEMDQIEKAL 364

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
           + F  +  + + ++PN FT +  + ACA  A L  G Q+H  V++  ++   PFV++ L+
Sbjct: 365 STFVDL--RRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKR-DPFVSSTLV 421

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           DMY + G  D +  +FD ++  + ++W +L+  +  HGLG  A   F+ M   GL P+ V
Sbjct: 422 DMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAV 481

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF+ LL  CSH+GMV+ GL YF SM K +G+  + EHY+C++DLLGRA +L EA + I  
Sbjct: 482 TFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINN 541

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MP EP    W + L  C+IH ++E  + AA++L++LE E  G++ LLSNIYA   +W+DV
Sbjct: 542 MPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDV 601

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744
             +R ++K   + K PG SWV  +  T  F V D +HPQ ++IYE L  L+ +IK +GYV
Sbjct: 602 QSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYV 661

Query: 745 PQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFI 804
           PQT   L D+DD  K  LL  HSE++A+A+ +LT   G PI + KNLR+C DCHSA+ FI
Sbjct: 662 PQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFI 721

Query: 805 SMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           S +    II+RD +RFHHF  GSC+C  YW
Sbjct: 722 SKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 231/509 (45%), Gaps = 43/509 (8%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +H +  Y         + L  ++S    ++  W ++I           A   F QM   G
Sbjct: 114 NHFLNLYSKCGELDYTIKLFDKMSQR--NMVSWTSIITGFAHNSRFQEALSSFCQMRIEG 171

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
               ++    VL+AC  L + + G+ VH ++   GF   +FV + L  MY++C  LS A 
Sbjct: 172 EIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDAC 231

Query: 191 QLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           + F+EM  P  C D V W +++  + ++GD +  L  + +M  D  V  D   L + LSA
Sbjct: 232 KAFEEM--P--CKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTD-DVFIDQHVLCSTLSA 286

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           C++L   S GK        K  FE     +    NA+   YS+ G    A  +F+     
Sbjct: 287 CSALKASSFGKSL-HATILKLGFEY----ETFIGNALTDMYSKSGDMVSASNVFQIHSD- 340

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
              +++V+ +A+I GY +     +AL  F  ++  G+EPN  T  SL+  CA+   L  G
Sbjct: 341 --CISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHG 398

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
            + H   +K       +   D  V + L+DMY KC   D +  +FD I  +N D   W  
Sbjct: 399 SQLHGQVVKF------NFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEI--ENPDEIAWNT 450

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG-------RQ 482
           ++G +SQ+G   +A+  F  M  +   +KPNA T    L  C+    +  G        +
Sbjct: 451 LVGVFSQHGLGRNAIETFNGMIHRG--LKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEK 508

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           I+  V + ++        +C+ID+  R+G +  A    +N+  + NV  W S +    +H
Sbjct: 509 IYGVVPKEEH-------YSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIH 561

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G  ++A +A D++ K  L P+     VLL
Sbjct: 562 GDMERAKFAADKLMK--LEPENSGAHVLL 588



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 7/180 (3%)

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVF 520
           T++  +   AR   L  G+Q+HA ++R      +P  F++N  +++YS+ G++D    +F
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGG---CLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D + QRN+VSWTS++TG+  +    +A  +F QMR EG          +L AC+  G + 
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G +    +  + G        + + D+  +   L +A +  E MP +   ++W ++++G
Sbjct: 194 FGTQ-VHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDA-VLWTSMIDG 251


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/662 (39%), Positives = 380/662 (57%), Gaps = 28/662 (4%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           +++ Y++   +   R+ FDEM    + DIVSWN ++AAY  + D +   + F  M     
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEM---PVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGI 57

Query: 236 VQGD-GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
             G+ G+S+   LSAC      + G+   +      + E   V+      A+V+ Y ++G
Sbjct: 58  NPGEVGISIF--LSACTDAREITIGRSIQLAILGTGIEEESIVQ-----TALVSMYGKLG 110

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
              DA ++F +M   +V    V WSA++A YA+ GH  EAL +FRQM   G+ PN VTLV
Sbjct: 111 HCTDAASVFLRMSHRDV----VAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLV 166

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S L  CAS+G L  G   H    +RV    G     ++V  AL+++Y KC  ++ A   F
Sbjct: 167 SGLDACASLGDLRSGALMH----QRV-EAQGIQ-SGVVVGTALVNLYGKCGRIEAAVEAF 220

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             I  KN  V  W+ +  +Y++N    DA+ +  +M   + LV PN+ T    L ACA +
Sbjct: 221 GQIVEKN--VVAWSAISAAYARNDRNRDAIRVLHRM-DLEGLV-PNSTTFVSVLDACAAI 276

Query: 475 AALRFGRQIH--AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
           AAL+ GR+IH    VL    E  + +V   L++MYS+ G++  A  +FD +   ++V W 
Sbjct: 277 AALKQGRRIHERTQVLGGGLESDV-YVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWN 335

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           SL+     HG  +KA   F++MR EGL P  +TF  +L+ACSH+GM+DQG K+F S   +
Sbjct: 336 SLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGD 395

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
            GI   AEH+ C+VDLLGRA  + ++ +L+  MP EP P+ W+A L  CR + N++    
Sbjct: 396 HGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIW 455

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
           AA  L +L+  K   Y LLSN+YA AGRW DVAR+R  M+     K  G SW++ K+   
Sbjct: 456 AAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVH 515

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F  GD  HP+  +I+  L  L + +K  GYVP T   LHDV  E K  ++  HSEKLA+
Sbjct: 516 EFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAM 575

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           A+ +LTT  G+PIR+ KNLR+C DCH+A  FIS ++N EI++RD NRFH F+ G+C+C  
Sbjct: 576 AFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGD 635

Query: 833 YW 834
           YW
Sbjct: 636 YW 637



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 156/316 (49%), Gaps = 20/316 (6%)

Query: 56  IHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           I ++ IVQ       + L++ Y      + A S+  R+S     V  W+A++    R   
Sbjct: 92  IEEESIVQ-------TALVSMYGKLGHCTDAASVFLRMSHR--DVVAWSAMVAAYARNGH 142

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P  A  LF QM   G  P++ T    L AC  L   R G+ +H  + + G  S V V  A
Sbjct: 143 PREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTA 202

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+ +Y +C  +  A + F ++ +    ++V+W+ I AAYA++      + +  RM  +  
Sbjct: 203 LVNLYGKCGRIEAAVEAFGQIVEK---NVVAWSAISAAYARNDRNRDAIRVLHRMDLEGL 259

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           V  +  + V+ L ACA++    +G++   + E  +V       DV    A+V  YS+ G+
Sbjct: 260 VP-NSTTFVSVLDACAAIAALKQGRR---IHERTQVLGGGLESDVYVLTALVNMYSKCGN 315

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A  +F K+      L++V W+++IA  AQ G   +AL++F +M+  GL+P ++T  S
Sbjct: 316 LALAGDMFDKI----AHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTS 371

Query: 356 LLSGCASVGALLLGKE 371
           +L  C+  G L  G++
Sbjct: 372 VLFACSHAGMLDQGRK 387


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 277/780 (35%), Positives = 414/780 (53%), Gaps = 42/780 (5%)

Query: 57  HQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLP 116
           H+ I   NL       +++AY S +   PA   L   SP   +  W   +   A   R  
Sbjct: 71  HKNIFSLNL-------ILSAY-SSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTS 122

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACG-ELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           D A  LF  M+  G  PD  T   VL   G  +PS      +H      G D++VFVCN 
Sbjct: 123 D-ALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS------LHPFAIKFGLDTHVFVCNT 175

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+  Y +   L+ AR++F EM      D V++N ++   ++ G     L LFA M     
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDK---DAVTYNAMMMGCSKEGLHTQALQLFAAMR-RAG 231

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           +     +  + L+  A +     G Q   +     V     V +V   N+++  YS+   
Sbjct: 232 IPATHFTFSSILTVAAGMAHLLLGHQVHAL-----VLRSTSVLNVFVNNSLLDFYSKCDC 286

Query: 296 FEDAFALFKKM-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
            +D   LF +M  ++NV  NV+     IA YA        L +FR+MQ  G +  V+   
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVI-----IAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           ++LS   S+  + +GK+ H       L + G   +DL+  NALIDMY+KC  +D A+  F
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQ-----LVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNF 395

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
              + K+    +WT +I  Y QNG   +AL LF  M +    ++P+  T S  + A + L
Sbjct: 396 SNRSEKS--AISWTALITGYVQNGQHEEALQLFSDMRRAG--LRPDRATFSSIIKASSSL 451

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           A +  GRQ+H+Y++R+ Y+  + F  + L+DMY++ G +D A   FD + +RN +SW ++
Sbjct: 452 AMIGLGRQLHSYLIRSGYKSSV-FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 510

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           ++ Y  +G    A   F+ M   G  PD VTFL +L ACSH+G+ D+ +KYF  M  ++ 
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYS 570

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           IS   EHYAC++D LGR     +  +++  MP +  PIIW ++L+ CRIH N EL  +AA
Sbjct: 571 ISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAA 630

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
           ++L  +E      Y +LSNIYA AG+W+D A ++ +M+  GV+K  G SWV+ K+   +F
Sbjct: 631 DKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSF 690

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
              D T P   +I + L  L + +   GY P  + ALH VD E K + L  HSE+LA+A+
Sbjct: 691 ASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAF 750

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            ++ T  GTPIRI KNL  C DCH+ I  IS I+N +II+RDS RFHHFK+G C+C  YW
Sbjct: 751 ALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/792 (32%), Positives = 431/792 (54%), Gaps = 44/792 (5%)

Query: 56  IHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH +II + L    +  + L+  Y S  +     S+  R+  S  SV  W  +I    + 
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQS--SVLLWTTMIAGCSQN 238

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
              +    +F +M   G   +E T+  +++ C  L + + G  + A I  S F S+  + 
Sbjct: 239 GQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLA 298

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
            +L+++Y +C  L  A+ L + M+Q    D+V+WN +V A AQ+GD    + L  RM  D
Sbjct: 299 TSLISLYGQCGILDRAKGLLEHMYQR---DVVAWNAMVTACAQNGDNWEAIHLLRRM--D 353

Query: 234 VKVQG-DGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNA 285
           ++  G + V+ ++ L ACA+L   S+G++       CG+++           ++V   N+
Sbjct: 354 MEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQ-----------REVAVGNS 402

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++T Y + G  E A ++F+ M +++     V+W+AVI          +AL++F  M+  G
Sbjct: 403 VITMYGKCGQTEAAMSVFEAMPRKDD----VSWNAVINASVGNSKFQDALELFHGMELEG 458

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L  N  TL+SLL  C  +  L L ++ H          + +      V N++++MYA+C 
Sbjct: 459 LRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNST-----AVGNSVVNMYARCG 513

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQ--NGGANDALALFPQMFQQDKLVKPNAFT 463
           S+  A+  FD++  K   +  W++++ +Y+Q  +G    A   F +M  + + +KP   T
Sbjct: 514 SLLDAKKAFDSLEEKG--LVAWSIILAAYAQSKDGPGRRAFKFFQEM--EAEGIKPGEVT 569

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
              AL ACA +A L  GR +H     + +      + N +I+MY + G    A++VFD +
Sbjct: 570 FVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQM 629

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            ++ ++SW SL+  Y  +G   +A  +  +M  +G  PD  T + +LY  SH+G++++G+
Sbjct: 630 PEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGV 689

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCR 642
           ++F S  ++ G+   +    C+VDLL R   LD A ELI   P  +   I W+ LL  C+
Sbjct: 690 EHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACK 749

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
            + + + G   A R+ ELE +  GS+ +L+N+YA+ GRW D +RIR +M+   VKK PGC
Sbjct: 750 SYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGC 809

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++       F  G+  HP+ ++I E L  L  R++  GYVP T+  +HDV++ +K ++
Sbjct: 810 SWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEI 869

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSE+LA+ +G+++T PG  IR+ KNLR+C DCH+A   IS ++  EI++RDS+RFHH
Sbjct: 870 LSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHH 929

Query: 823 FKEGSCTCKGYW 834
           FK G C+C  +W
Sbjct: 930 FKHGQCSCGDFW 941



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 227/478 (47%), Gaps = 23/478 (4%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S  +VF W  ++    +      A  LF +M   G  PD+  F   L AC        G 
Sbjct: 19  SAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGR 78

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +H+ +  SG  SN+ + N+L+ MY +C  +  A ++FD M    + D+VSW  ++A YA
Sbjct: 79  QIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML---LRDVVSWTAMLAVYA 135

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           Q+G     L   +RM  +  V+ + V+ V  +  CA L     G++        ++    
Sbjct: 136 QNGCWSQALECLSRMDAE-GVKPNQVTFVTIVDVCAKLRLLDLGRKI-----HHRIINEG 189

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              D +  NA+V  Y   GSF+D  ++F +M Q +V L    W+ +IAG +Q G   E L
Sbjct: 190 LEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLL----WTTMIAGCSQNGQYEEGL 245

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            VFR+M   G++ N VT +S++  C ++ A+  G+        R+L  +       ++  
Sbjct: 246 LVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGE----MIDARIL--ESPFCSSTLLAT 299

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +LI +Y +C  +D A+ + + +    RDV  W  M+ + +QNG   +A+ L  +M  +  
Sbjct: 300 SLISLYGQCGILDRAKGLLEHM--YQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEG- 356

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
               N  T    L ACA L AL  GR+IHA VL          V N +I MY + G  + 
Sbjct: 357 -FGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEA 415

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           A  VF+ + +++ VSW +++     +     A   F  M  EGL  +  T L LL AC
Sbjct: 416 AMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEAC 473



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 177/354 (50%), Gaps = 21/354 (5%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y +     DA  +F  +  +NV     +W+ ++A Y+Q GH  EAL++F +MQ+ G  P+
Sbjct: 2   YGKCARVTDALMVFDGISAKNV----FSWTMMMAAYSQNGHYREALELFTRMQWEGTRPD 57

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            V  V  L  CA+ G L  G++ H   +   L+       ++++ N+L++MY KC+ V  
Sbjct: 58  KVVFVIALDACAASGELDHGRQIHSSVVGSGLT------SNIIISNSLVNMYGKCQDVPC 111

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A  +FD +    RDV +WT M+  Y+QNG  + AL    +M  +   VKPN  T    + 
Sbjct: 112 AEKVFDGMLL--RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEG--VKPNQVTFVTIVD 167

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
            CA+L  L  GR+IH  ++    E L P   + N L+ MY   G  D  + VF  + Q +
Sbjct: 168 VCAKLRLLDLGRKIHHRIIN---EGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSS 224

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           V+ WT+++ G   +G  ++    F +M  EG+  + VT++ ++  C +   V +G +  D
Sbjct: 225 VLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEG-EMID 283

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           +   E    +       ++ L G+   LD A  L+E M  +   + W A++  C
Sbjct: 284 ARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTAC 336



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY KC  V  A ++FD I+ KN  V +WT+M+ +YSQNG   +AL LF +M  Q +  +P
Sbjct: 1   MYGKCARVTDALMVFDGISAKN--VFSWTMMMAAYSQNGHYREALELFTRM--QWEGTRP 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +      AL ACA    L  GRQIH+ V+ +     I  ++N L++MY +  D+  A  V
Sbjct: 57  DKVVFVIALDACAASGELDHGRQIHSSVVGSGLTSNI-IISNSLVNMYGKCQDVPCAEKV 115

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +  R+VVSWT+++  Y  +G   +A     +M  EG+ P+ VTF+ ++  C+   ++
Sbjct: 116 FDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLL 175

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           D G K    +  E G+         +V + G     D+   +   M  + + ++W  ++ 
Sbjct: 176 DLGRKIHHRIINE-GLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIA 233

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           GC  +   E G L   R ++LE  K    T +S +
Sbjct: 234 GCSQNGQYEEG-LLVFRKMDLEGVKANEVTYMSMV 267


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 285/852 (33%), Positives = 427/852 (50%), Gaps = 102/852 (11%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L   + L  + + H  +I  N+       ++  Y      S A+ L  R+      V  W
Sbjct: 55  LSDARRLLLMDIAHPNVITHNV-------MLNGYAKLGRLSDAVELFGRMPAR--DVASW 105

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           N L+    + R    +   FL M R G  W P+ +T    +K+CG L        + A++
Sbjct: 106 NTLMSGYFQSRQYLVSLETFLSMHRSGDSW-PNAFTLACAMKSCGALGWHSLALQLLAMV 164

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C------------------ 202
                  +  V  AL+ M+ RC  +  A +LF  + +P + C                  
Sbjct: 165 QKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHAL 224

Query: 203 ---------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
                    D+VSWN +V+A +QSG     L +   M     V+ D  +  ++L+ACA L
Sbjct: 225 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARL 283

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
            +   GKQ        +V   +   D    +A+V  Y++ G F++A  +F  +   N   
Sbjct: 284 SSLRWGKQL-----HAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNN-- 336

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V W+ +I+G+ Q G   E++++F QM+   +  +   L +L+SGC S   L LG++ H
Sbjct: 337 --VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS--------------------------- 406
              +K            ++V N+LI MYAKC +                           
Sbjct: 395 SLCLK------SGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYS 448

Query: 407 ----VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
               V  AR  FD ++ KN  V TW  M+G+Y Q+G   D L ++  M  ++  V+P+  
Sbjct: 449 QVGNVAKAREFFDGMSEKN--VITWNAMLGAYIQHGAEEDGLRMYKVMLSEE-YVRPDWV 505

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T       CA L A + G QI    ++    ++   VAN +I MYS+ G I  AR VFD 
Sbjct: 506 TYVTLFKGCADLGANKLGDQIIGRTVKVGL-IIDTSVANAVITMYSKCGRILEARKVFDF 564

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L  +++VSW +++TGY  HG+G +A   FD + K G  PD ++++ +L  CSHSG+V +G
Sbjct: 565 LNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             YFD M +   IS   EH++C+VDLLGRA  L EA +LI+ MPM+PT  +W ALL+ C+
Sbjct: 625 KFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACK 684

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH N EL ELAA  + EL+S   GSY L++ IYA+AG+  D A+IR LM+  G+KK PG 
Sbjct: 685 IHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGY 744

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++       F   D +HPQ   I + L  L+++I  +GYV           D  + ++
Sbjct: 745 SWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRT---------DSTRSEI 795

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
              HSEKLA+A+G++T     PI I KNLRICGDCH+ I  IS +   E ++RD+ RFHH
Sbjct: 796 --HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHH 853

Query: 823 FKEGSCTCKGYW 834
           F  GSC+C  YW
Sbjct: 854 FNGGSCSCGDYW 865



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 234/511 (45%), Gaps = 76/511 (14%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ-LFDEM 196
           F   L++CG   +     ++H  + + G  S VF+ N L+  Y  C  LS AR+ L  ++
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 197 FQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFA 228
             P +                             D+ SWNT+++ Y QS      L  F 
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            M        +  +L  A+ +C +LG  S   Q                          C
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ A ++F R+K   +   N+M+ GY +    + A  LF  M +     +VV+W+ ++
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER----DVVSWNMMV 242

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +  +Q G   EALD+   MQ  G+  +  T  S L+ CA + +L  GK+ H   I+ +  
Sbjct: 243 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPH 302

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +D        V +AL+++YAK      A+ +F+++  +N     WTV+I  + Q G   +
Sbjct: 303 IDP------YVASALVELYAKSGCFKEAKGVFNSLHDRNN--VAWTVLISGFLQYGCFTE 354

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVAN 501
           ++ LF QM  + +L+  + F L+  +  C     L  GRQ+H+  L++ Q + ++  V+N
Sbjct: 355 SVELFNQM--RAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV--VSN 410

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI MY++  ++ +A  +F  + ++++VSWTS++T Y   G   KA   FD M ++ +  
Sbjct: 411 SLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV-- 468

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
             +T+  +L A    G  + GL+ +  M  E
Sbjct: 469 --ITWNAMLGAYIQHGAEEDGLRMYKVMLSE 497



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 93/497 (18%)

Query: 29  FSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP---SHLIAAYVSHNAPSP 85
           ++ + T C +++SL  R  K L      H Q+I +NL H+ P   S L+  Y        
Sbjct: 273 YTSSLTACARLSSL--RWGKQL------HAQVI-RNLPHIDPYVASALVELYAKSGCFKE 323

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +   +     +   W  LI   ++      +  LF QM       D++    ++  C
Sbjct: 324 AKGVFNSLHDR--NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--- 202
                   G  +H++   SG    V V N+L++MYA+CD L  A  +F  M +  I    
Sbjct: 382 CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWT 441

Query: 203 -------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                                    ++++WN ++ AY Q G  E GL ++  M  +  V+
Sbjct: 442 SMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVR 501

Query: 238 GDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKV 271
            D V+ V     CA LG    G Q                          CG + EA+KV
Sbjct: 502 PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKV 561

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+ + VKD+VSWNAM+TGYS+ G  + A  +F  + +   K + +++ AV++G +  G  
Sbjct: 562 FDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLV 621

Query: 332 HEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
            E    F  M+    + P +     ++         LLG+  H    K ++  D      
Sbjct: 622 QEGKFYFDMMKRAHNISPGLEHFSCMVD--------LLGRAGHLTEAKDLID-DMPMKPT 672

Query: 391 LMVINALIDMYAKCK-------SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
             V  AL+   + CK       +   A+ +F+  +P   D  ++ +M   Y+  G ++D+
Sbjct: 673 AEVWGALL---SACKIHGNNELAELAAKHVFELDSP---DSGSYMLMAKIYADAGKSDDS 726

Query: 444 LALFPQMFQQDKLVKPN 460
             +   M  +DK +K N
Sbjct: 727 AQIRKLM--RDKGIKKN 741


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 285/852 (33%), Positives = 427/852 (50%), Gaps = 102/852 (11%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L   + L  + + H  +I  N+       ++  Y      S A+ L  R+      V  W
Sbjct: 75  LSDARRLLLMDIAHPNVITHNV-------MLNGYAKLGRLSDAVELFGRMPAR--DVASW 125

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           N L+    + R    +   FL M R G  W P+ +T    +K+CG L        + A++
Sbjct: 126 NTLMSGYFQSRQYLVSLETFLSMHRSGDSW-PNAFTLACAMKSCGALGWHSLALQLLAMV 184

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C------------------ 202
                  +  V  AL+ M+ RC  +  A +LF  + +P + C                  
Sbjct: 185 QKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHAL 244

Query: 203 ---------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
                    D+VSWN +V+A +QSG     L +   M     V+ D  +  ++L+ACA L
Sbjct: 245 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARL 303

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
            +   GKQ        +V   +   D    +A+V  Y++ G F++A  +F  +   N   
Sbjct: 304 SSLRWGKQL-----HAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNN-- 356

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V W+ +I+G+ Q G   E++++F QM+   +  +   L +L+SGC S   L LG++ H
Sbjct: 357 --VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 414

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS--------------------------- 406
              +K            ++V N+LI MYAKC +                           
Sbjct: 415 SLCLK------SGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYS 468

Query: 407 ----VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
               V  AR  FD ++ KN  V TW  M+G+Y Q+G   D L ++  M  ++  V+P+  
Sbjct: 469 QVGNVAKAREFFDGMSEKN--VITWNAMLGAYIQHGAEEDGLRMYKVMLSEE-YVRPDWV 525

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T       CA L A + G QI    ++    ++   VAN +I MYS+ G I  AR VFD 
Sbjct: 526 TYVTLFKGCADLGANKLGDQIIGRTVKVGL-IIDTSVANAVITMYSKCGRILEARKVFDF 584

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L  +++VSW +++TGY  HG+G +A   FD + K G  PD ++++ +L  CSHSG+V +G
Sbjct: 585 LNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEG 644

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             YFD M +   IS   EH++C+VDLLGRA  L EA +LI+ MPM+PT  +W ALL+ C+
Sbjct: 645 KFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACK 704

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH N EL ELAA  + EL+S   GSY L++ IYA+AG+  D A+IR LM+  G+KK PG 
Sbjct: 705 IHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGY 764

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++       F   D +HPQ   I + L  L+++I  +GYV           D  + ++
Sbjct: 765 SWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRT---------DSTRSEI 815

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
              HSEKLA+A+G++T     PI I KNLRICGDCH+ I  IS +   E ++RD+ RFHH
Sbjct: 816 --HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHH 873

Query: 823 FKEGSCTCKGYW 834
           F  GSC+C  YW
Sbjct: 874 FNGGSCSCGDYW 885



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 234/511 (45%), Gaps = 76/511 (14%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ-LFDEM 196
           F   L++CG   +     ++H  + + G  S VF+ N L+  Y  C  LS AR+ L  ++
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 197 FQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFA 228
             P +                             D+ SWNT+++ Y QS      L  F 
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            M        +  +L  A+ +C +LG  S   Q                          C
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ A ++F R+K   +   N+M+ GY +    + A  LF  M +     +VV+W+ ++
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER----DVVSWNMMV 262

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +  +Q G   EALD+   MQ  G+  +  T  S L+ CA + +L  GK+ H   I+ +  
Sbjct: 263 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPH 322

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +D        V +AL+++YAK      A+ +F+++  +N     WTV+I  + Q G   +
Sbjct: 323 IDP------YVASALVELYAKSGCFKEAKGVFNSLHDRNN--VAWTVLISGFLQYGCFTE 374

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVAN 501
           ++ LF QM  + +L+  + F L+  +  C     L  GRQ+H+  L++ Q + ++  V+N
Sbjct: 375 SVELFNQM--RAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV--VSN 430

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI MY++  ++ +A  +F  + ++++VSWTS++T Y   G   KA   FD M ++ +  
Sbjct: 431 SLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV-- 488

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
             +T+  +L A    G  + GL+ +  M  E
Sbjct: 489 --ITWNAMLGAYIQHGAEEDGLRMYKVMLSE 517



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 93/497 (18%)

Query: 29  FSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP---SHLIAAYVSHNAPSP 85
           ++ + T C +++SL  R  K L      H Q+I +NL H+ P   S L+  Y        
Sbjct: 293 YTSSLTACARLSSL--RWGKQL------HAQVI-RNLPHIDPYVASALVELYAKSGCFKE 343

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +   +     +   W  LI   ++      +  LF QM       D++    ++  C
Sbjct: 344 AKGVFNSLHDR--NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--- 202
                   G  +H++   SG    V V N+L++MYA+CD L  A  +F  M +  I    
Sbjct: 402 CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWT 461

Query: 203 -------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
                                    ++++WN ++ AY Q G  E GL ++  M  +  V+
Sbjct: 462 SMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVR 521

Query: 238 GDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKV 271
            D V+ V     CA LG    G Q                          CG + EA+KV
Sbjct: 522 PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKV 581

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+ + VKD+VSWNAM+TGYS+ G  + A  +F  + +   K + +++ AV++G +  G  
Sbjct: 582 FDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLV 641

Query: 332 HEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
            E    F  M+    + P +     ++         LLG+  H    K ++  D      
Sbjct: 642 QEGKFYFDMMKRAHNISPGLEHFSCMVD--------LLGRAGHLTEAKDLID-DMPMKPT 692

Query: 391 LMVINALIDMYAKCK-------SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
             V  AL+   + CK       +   A+ +F+  +P   D  ++ +M   Y+  G ++D+
Sbjct: 693 AEVWGALL---SACKIHGNNELAELAAKHVFELDSP---DSGSYMLMAKIYADAGKSDDS 746

Query: 444 LALFPQMFQQDKLVKPN 460
             +   M  +DK +K N
Sbjct: 747 AQIRKLM--RDKGIKKN 761


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/694 (37%), Positives = 390/694 (56%), Gaps = 62/694 (8%)

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC 202
           K   + P  +   +VH+ + +  F  N  +   LM  YA       AR +FD + +    
Sbjct: 40  KVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPER--- 96

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           +++ +N ++ +Y  +   +  L++F  M        D  +    L AC+       G Q 
Sbjct: 97  NVIFYNVMIRSYMNNHLYDDALLVFRDMVSG-GFSPDHYTYPCVLKACSCSDNLRIGLQL 155

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                   VF+     ++   N ++  Y + G   +A  +  +M+ ++V    V+W++++
Sbjct: 156 -----HGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDV----VSWNSMV 206

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           AGYAQ     +ALD+ R+M     +P+  T+ SLL    +  +            + VL 
Sbjct: 207 AGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSS------------ENVLY 254

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V+       M +N                        + + + +W VMI  Y +N     
Sbjct: 255 VEE------MFMNL-----------------------EKKSLVSWNVMISVYMKNSMPGK 285

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP--FVA 500
           ++ L+ QM + +  V+P+A T +  L AC  L+AL  GR+IH YV R +   L P   + 
Sbjct: 286 SVDLYLQMGKCE--VEPDAITCASVLRACGDLSALLLGRRIHEYVERKK---LCPNMLLE 340

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LIDMY+R G ++ A+ VFD +K R+V SWTSL++ YGM G G  A   F +M+  G +
Sbjct: 341 NSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQS 400

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD + F+ +L ACSHSG++++G  YF  M+ ++ I+   EH+AC+VDLLGR+ R+DEA  
Sbjct: 401 PDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYN 460

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           +I+ MPM+P   +W ALL+ CR+++N+++G LAA++LL+L  E+ G Y LLSNIYA AGR
Sbjct: 461 IIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGR 520

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W +V  IRSLMK   ++K PG S V+      TF  GD  HPQS++IYE L+ LV ++K 
Sbjct: 521 WTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKE 580

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
           +GYVP+T  ALHDV++E+K   L  HSEKLA+ + IL T   +PIRITKNLR+CGDCH A
Sbjct: 581 LGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCHIA 639

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
              IS I+  EI++RD+NRFHHFK+G C+C  YW
Sbjct: 640 AKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 164/570 (28%), Positives = 276/570 (48%), Gaps = 79/570 (13%)

Query: 16  PLT-----LNHLFTNIKLFSVTTTPCIKITSLL---LRQCKSLTQVYLIHQQIIVQNLT- 66
           PLT     L  L ++I+   V+    + +  LL   L Q   +  +  +H ++   NL+ 
Sbjct: 6   PLTHQFPKLQALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVF--NLSF 63

Query: 67  HVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
           H  PS    L+ AY +   P  A ++   I     +V ++N +IR  +   L D+A  +F
Sbjct: 64  HENPSLGIKLMRAYAARGEPGLARNVFDVIPER--NVIFYNVMIRSYMNNHLYDDALLVF 121

Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
             M+  G+ PD YT+P VLKAC    + R G  +H  +   G D N+FV N L+A+Y +C
Sbjct: 122 RDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKC 181

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             L  AR + DEM      D+VSWN++VA YAQ+   +  L +   M G V+ + D  ++
Sbjct: 182 GCLPEARCVLDEMQSK---DVVSWNSMVAGYAQNMQFDDALDICREMDG-VRQKPDACTM 237

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
            + L A     T +  +    +EE   +F  ++ K +VSWN M                 
Sbjct: 238 ASLLPAV----TNTSSENVLYVEE---MFMNLEKKSLVSWNVM----------------- 273

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
                             I+ Y +     +++D++ QM  C +EP+ +T  S+L  C  +
Sbjct: 274 ------------------ISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDL 315

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
            ALLLG+  H Y  ++ L        ++++ N+LIDMYA+C  ++ A+ +FD +  K RD
Sbjct: 316 SALLLGRRIHEYVERKKLC------PNMLLENSLIDMYARCGCLEDAKRVFDRM--KFRD 367

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           VA+WT +I +Y   G   +A+ALF +M  Q+    P++      L AC+    L  G+  
Sbjct: 368 VASWTSLISAYGMTGQGYNAVALFTEM--QNSGQSPDSIAFVAILSACSHSGLLNEGK-F 424

Query: 484 HAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGM 540
           +   + + Y+ + P + +  CL+D+  RSG +D A  +   +  + N   W +L++   +
Sbjct: 425 YFKQMTDDYK-ITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRV 483

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +   D    A D++ +  LAP+   + VLL
Sbjct: 484 YSNMDIGILAADKLLQ--LAPEESGYYVLL 511


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/690 (37%), Positives = 387/690 (56%), Gaps = 65/690 (9%)

Query: 149 PSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           P ++    +H+ ++       N  +   LM  YA C    Y R +FDE+      ++V +
Sbjct: 49  PDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDK---NVVFF 105

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGM 264
           N ++ +Y  +G  +  L++F  M      QG   D  +    L AC+  G    G Q   
Sbjct: 106 NVMIRSYVNNGLYQDALLVFKTMAN----QGFYPDNYTYPCVLKACSVSGNLWVGLQI-- 159

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                 V +     ++   N +V+ Y +    + A  +  +M   ++    V+W++++AG
Sbjct: 160 ---HGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDM----VSWNSMVAG 212

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           YAQ G  ++AL + R+M+   L+P+  T+ SLL    +         T C          
Sbjct: 213 YAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN---------TSC---------- 253

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
               D+++ +    DM+ K K                + + +W VMI  Y  N   N+A+
Sbjct: 254 ----DNVLYVK---DMFVKLKE---------------KSLISWNVMIAVYVNNAMPNEAV 291

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            L+ QM  Q   V+P+A ++S  L AC  L+A   GR+IH YV R +    +  + N LI
Sbjct: 292 DLYLQM--QVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNL-LLENALI 348

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           DMY++ G +  AR VFD +  R+VVSWTS+++ YGM G G  A   F +MR  G  PD +
Sbjct: 349 DMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWI 408

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
            F+ +L ACSH+G+VD+G   F+ M+ E+GI+   EHY C+VDLLGRA ++DEA  L   
Sbjct: 409 AFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQ 467

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MPMEP   +W +LL+ CR+++++ +  LAA+ L +L  E+ G Y LLSNIYA AGRW+DV
Sbjct: 468 MPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDV 527

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744
             +RS+M   G+KK PG S V+  +   TF  GD++H QS++IY+ L  LV R+K +GY+
Sbjct: 528 ETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYM 587

Query: 745 PQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFI 804
           P+T  ALHDV++E+K   L  HSEKLA+ + IL T PG+ IRITKN+R+CGDCH A   I
Sbjct: 588 PETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLI 647

Query: 805 SMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           S I   EII+RD++RFHHF++G C+C  YW
Sbjct: 648 SKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 170/576 (29%), Positives = 273/576 (47%), Gaps = 82/576 (14%)

Query: 14  KTPLTLNHLFT---NIKLFSVTT-TPCI--KITSLLLRQCKSLTQV-------YLIHQQI 60
           KT  +L+  F+     K FS+TT  P +  K T+L    C  +  V         +H +I
Sbjct: 2   KTISSLSRQFSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKI 61

Query: 61  IVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPD 117
           ++    H  PS    L+ AY +   P     +   I+    +V ++N +IR  V   L  
Sbjct: 62  LIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDK--NVVFFNVMIRSYVNNGLYQ 119

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
           +A  +F  M  +G++PD YT+P VLKAC    +   G  +H  +   G D N+++ N L+
Sbjct: 120 DALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLV 179

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
           +MY +C  L  AR++ DEM  PG  D+VSWN++VA YAQ+G     L L   M  D+K++
Sbjct: 180 SMYGKCKWLDAARRVLDEM--PGR-DMVSWNSMVAGYAQNGRFNDALKLCREME-DLKLK 235

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
            D  ++ + L A  +         C  +   K +F ++K K ++SWN M+  Y       
Sbjct: 236 PDAGTMGSLLPAVTN-------TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPN 288

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           +A  L+ +M                                   Q  G+EP+ V++ S+L
Sbjct: 289 EAVDLYLQM-----------------------------------QVHGVEPDAVSISSVL 313

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C  + A +LG+  H Y  ++ L        +L++ NALIDMYAKC  +  AR +FD +
Sbjct: 314 PACGDLSAAVLGRRIHEYVERKKLR------PNLLLENALIDMYAKCGCLKEARAVFDQM 367

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               RDV +WT MI +Y  +G   DA+ALF +M  +D    P+       L AC+    +
Sbjct: 368 M--FRDVVSWTSMISAYGMSGQGKDAVALFKKM--RDSGFTPDWIAFVSVLAACSHAGLV 423

Query: 478 RFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSL 534
             GR  + + L  +Y  + P +   NC++D+  R+G ID A  +   +  + N   W SL
Sbjct: 424 DEGR--YCFNLMAEYG-ITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSL 480

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           ++   ++   + A  A D + +  LAP+   + VLL
Sbjct: 481 LSACRVYSSMNIALLAADHLFQ--LAPEQSGYYVLL 514


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 275/778 (35%), Positives = 427/778 (54%), Gaps = 44/778 (5%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + L+  Y   +A + A S+   +      +  W A+     R      A RLF + +
Sbjct: 85  VVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETL 144

Query: 128 RRGWHPDEYTFPFVLKAC--GELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCD 184
             G  P+ +T     +AC   EL     G +V  ++   GF  ++V V  AL+ M+A+  
Sbjct: 145 EEGLLPNAFTLCAATQACFASEL-FHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNG 203

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            L   R++FD +F+     +V W  ++  YAQSG ++  + LF  M  +   Q D  +L 
Sbjct: 204 DLVAMRRVFDGLFER---TVVVWTLLITRYAQSGYSDEAVELFLDMLEN-GFQPDQYTLS 259

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRI---GSFEDAF 300
           + LSAC  LG++  G+Q         +  R+ ++ D      +V  Y++     S  +A 
Sbjct: 260 SMLSACTELGSFRLGQQL------HSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAR 313

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRG-HGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
            +F +M     K NV+ W+A+++GY QRG   ++ + +F +M   G+ PN +T  S+L  
Sbjct: 314 EVFNRMP----KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKA 369

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI-NALIDMYAKCKSVDVARVMFDAIA 418
           CA++G    G++ H + +K  L+       DL V+ NAL+ MYA+  S++ AR  FD + 
Sbjct: 370 CANLGDQDSGRQIHTHCVKSNLA-------DLNVVGNALVSMYAESGSIEEARHAFDQLY 422

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-VKPNAFTLSCALMACARLAAL 477
            KN          G+   +G +N       Q +Q +++ +  + FT    + A A +  L
Sbjct: 423 EKN-----MVSFSGNLDGDGRSNTY-----QDYQIERMELGISTFTFGSLISAAASVGML 472

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G+++HA  L+  +      + N L+ MYSR G +  A  VFD +   NV+SWTS+++G
Sbjct: 473 TKGQRLHALSLKAGFGS-DRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISG 531

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
              HG   +A   F  M   G+ P+ VT++ +L ACSH+G+V +G ++F  M K  G+  
Sbjct: 532 LAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIP 591

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
           R EHYAC+VDLLGR+  +++A++ I  MP +   ++W  LL  C+ H N+++GE+AAN +
Sbjct: 592 RMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHV 651

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           ++LE +    Y LLSN+YA AG W  VARIRSLM+   + K  G SW+        F  G
Sbjct: 652 IQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAG 711

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D +HPQ+++IY  L  L++ IK MGYVP TS  LHD+ DE K   L +HSEK+A+A+G++
Sbjct: 712 DTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLI 771

Query: 778 TTAPGT-PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +    T PIRI KNLR+C DCHSA+ ++S     EIILRDSNRFH  K+G C+C  YW
Sbjct: 772 SCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 153/558 (27%), Positives = 263/558 (47%), Gaps = 53/558 (9%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H +   S  +++  V N+L+ +Y++C  ++ AR +FD M   G+ D+VSW  + +  +++
Sbjct: 72  HLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGM-PVGLRDLVSWTAMASCLSRN 130

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC--ASLGTWSRGKQCGMMEEAKKVFE-R 274
           G     L LF   T +  +  +  +L  A  AC  + L   + G   G+      VF+  
Sbjct: 131 GAEAEALRLFGE-TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGL------VFKLG 183

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               DV    A++  +++ G       +F  + +      VV W+ +I  YAQ G+  EA
Sbjct: 184 FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFER----TVVVWTLLITRYAQSGYSDEA 239

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           +++F  M   G +P+  TL S+LS C  +G+  LG++ H   ++  L  D        V 
Sbjct: 240 VELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSC------VS 293

Query: 395 NALIDMYAKC---KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA-NDALALFPQM 450
             L+DMYAK    +S+  AR +F+ + PK+ +V  WT ++  Y Q G   N  + LF +M
Sbjct: 294 CGLVDMYAKSHNGQSLHNAREVFNRM-PKH-NVMAWTALLSGYVQRGSQDNQVMILFCKM 351

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
             +   ++PN  T S  L ACA L     GRQIH + +++    L   V N L+ MY+ S
Sbjct: 352 LNEG--IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADL-NVVGNALVSMYAES 408

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G I+ AR  FD L ++N+VS++       + G G    +   Q+ +  L     TF  L+
Sbjct: 409 GSIEEARHAFDQLYEKNMVSFSG-----NLDGDGRSNTYQDYQIERMELGISTFTFGSLI 463

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            A +  GM+ +G +   ++S + G  +       +V +  R   L +A ++ + M  +  
Sbjct: 464 SAAASVGMLTKGQR-LHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMN-DHN 521

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESE--------KDGSYTLLSNIYANAGRWK 682
            I W ++++G   H         A R LEL  +         D +Y  + +  ++AG  K
Sbjct: 522 VISWTSMISGLAKHG-------YAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVK 574

Query: 683 D-VARIRSLMKHTGVKKR 699
           +     R + KH G+  R
Sbjct: 575 EGKEHFRMMQKHHGLIPR 592


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/594 (39%), Positives = 365/594 (61%), Gaps = 24/594 (4%)

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           SLV A+S+C S+        C  +    +V + +   D    + +V+ Y ++G  EDA  
Sbjct: 67  SLVFAISSCTSVS------YCSAIH--ARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQR 118

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGC 360
           LF +M  +++    V+W+++++G + RG+    L+ F +M+   G +PN VTL+S++S C
Sbjct: 119 LFDEMPNKDL----VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 174

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A +GAL  GK  H   +K  +S          V+N+LI+MY K   +D A  +F+ +   
Sbjct: 175 ADMGALDEGKSLHGVVVKLGMSGKAK------VVNSLINMYGKLGFLDAASQLFEEMPV- 227

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            R + +W  M+  ++ NG A   + LF  M +    + P+  T+   L AC      R  
Sbjct: 228 -RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG--INPDQATMVALLRACTDTGLGRQA 284

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             IHAY+ R  +   I  +A  L+++Y++ G ++ +  +F+ +K R+ ++WT+++ GY +
Sbjct: 285 ESIHAYIHRCGFNADI-IIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAV 343

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           H  G +A   FD M KEG+  D VTF  LL ACSHSG+V++G KYF+ MS+ + +  R +
Sbjct: 344 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 403

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HY+C+VDLLGR+ RL++A ELI+ MPMEP+  +W ALL  CR++ NVELG+  A +LL L
Sbjct: 404 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 463

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           +     +Y +LSNIY+ AG W+D +++R+LMK   + + PGCS+++       F VGD+ 
Sbjct: 464 DPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 523

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP+S +I+  L  L+++I+  G  P+T F LHD+D+E K D++ +HSEKLA+A+G+L T 
Sbjct: 524 HPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTG 583

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            G P+ ITKNLRICGDCHS   F S++    II+RDS RFHHF +G C+C+ YW
Sbjct: 584 SGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 195/389 (50%), Gaps = 43/389 (11%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           +  F + +C  +  S C S++HA +  S   S+ F+ + L++MY +      A++LFDEM
Sbjct: 67  SLVFAISSCTSV--SYC-SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
                 D+VSWN++++  +  G     L  F RM  +   Q + V+L++ +SACA +G  
Sbjct: 124 PNK---DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGAL 180

Query: 257 SRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
             GK       + GM  +AK V            N+++  Y ++G  + A  LF++M   
Sbjct: 181 DEGKSLHGVVVKLGMSGKAKVV------------NSLINMYGKLGFLDAASQLFEEMPVR 228

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
               ++V+W++++  +   G+  + +D+F  M+  G+ P+  T+V+LL  C   G     
Sbjct: 229 ----SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 284

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           +  H Y  +   +       D+++  AL+++YAK   ++ +  +F+ I  K+RD   WT 
Sbjct: 285 ESIHAYIHRCGFNA------DIIIATALLNLYAKLGRLNASEDIFEEI--KDRDRIAWTA 336

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           M+  Y+ +    +A+ LF  M ++   V+ +  T +  L AC+    +  G++   + + 
Sbjct: 337 MLAGYAVHACGREAIKLFDLMVKEG--VEVDHVTFTHLLSACSHSGLVEEGKKY--FEIM 392

Query: 490 NQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
           ++   + P + +  C++D+  RSG ++ A
Sbjct: 393 SEVYRVEPRLDHYSCMVDLLGRSGRLEDA 421



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 210/521 (40%), Gaps = 73/521 (14%)

Query: 14  KTPLTLNHLFT------NIKLFSVTTTPCIKITSLL------LRQCKSLTQVYLIHQQII 61
           K P  L   F       N  LF ++  P  ++ S++      +  C S++    IH ++I
Sbjct: 32  KYPFLLCKFFISKRRICNANLFQLS--PPFQVYSIVQSLVFAISSCTSVSYCSAIHARVI 89

Query: 62  VQNLTHVPP---SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDN 118
            ++L +        L++ Y        A  L   + P+   +  WN+L+           
Sbjct: 90  -KSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM-PNK-DLVSWNSLMSGLSGRGYLGA 146

Query: 119 AFRLFLQM-MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
               F +M    G  P+E T   V+ AC ++ +   G S+H V+   G      V N+L+
Sbjct: 147 CLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLI 206

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            MY +   L  A QLF+EM    +  +VSWN++V  +  +G AE G+ LF  M     + 
Sbjct: 207 NMYGKLGFLDAASQLFEEM---PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMK-RAGIN 262

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSF 296
            D  ++V  L AC   G    G+Q    E       R     D++   A++  Y+++G  
Sbjct: 263 PDQATMVALLRACTDTGL---GRQA---ESIHAYIHRCGFNADIIIATALLNLYAKLGRL 316

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
             +  +F++++      + + W+A++AGYA    G EA+ +F  M   G+E + VT   L
Sbjct: 317 NASEDIFEEIKDR----DRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHL 372

Query: 357 LSGCASVGALLLGKE-----THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
           LS C+  G +  GK+     +  Y ++  L       D L     L D Y   KS+    
Sbjct: 373 LSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM---- 428

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC----- 466
                  P       W  ++G+    G       +  Q+   D     N   LS      
Sbjct: 429 -------PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 481

Query: 467 ----------ALMACARL------AALRFGRQIHAYVLRNQ 491
                     ALM   RL      + +  G +IH +V+ +Q
Sbjct: 482 GLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQ 522


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/558 (41%), Positives = 345/558 (61%), Gaps = 14/558 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D  S +A++  Y+      DA   F ++   N     V  +A+ +GY +    + +L +F
Sbjct: 124 DPFSASALLHMYNHCSRPIDARKAFDEIPSPNP----VIITAMASGYVRNNLVYPSLALF 179

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R++   G    V    +L++  AS      G  +  + +     +DG    D  V+N ++
Sbjct: 180 RKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDG----DAGVVNTML 235

Query: 399 DMYAKCKSVDV--ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           D YAK    D+  AR +FD +    +DV +W  MI  Y+QNG + DAL L+ +M      
Sbjct: 236 DAYAKGGRRDLGAARKVFDTM---EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGS 292

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +K NA TLS  L+ACA    ++ G+ IH  V+R   E  + +V   ++DMYS+ G ++ A
Sbjct: 293 IKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENV-YVGTSVVDMYSKCGRVEMA 351

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R  F  +K++N++SW++++TGYGMHG G +A   F++M + G  P+ +TF+ +L ACSH+
Sbjct: 352 RKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHA 411

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G++D+G  ++++M K FGI    EHY C+VDLLGRA  LDEA  LI+ M ++P   IW A
Sbjct: 412 GLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGA 471

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ CRIH NVEL E++A RL EL++   G Y LLSNIYA AG WKDV R+R L+K  G+
Sbjct: 472 LLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGI 531

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           +K PG S V+ K  T  F+VGD++HPQ ++IY  L  L+++++  GYVP T   LHD+D+
Sbjct: 532 EKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDE 591

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EEK   L  HSEKLA+A+ ++ + PG+ I + KNLR+C DCH+AI  I+ I   EII+RD
Sbjct: 592 EEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRD 651

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHFK+GSC+C  YW
Sbjct: 652 LQRFHHFKDGSCSCGDYW 669



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 139/290 (47%), Gaps = 41/290 (14%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVLKACGELPSSR 152
           PSP  V    A+    VR  L   +  LF +++  G     DE        A   +P   
Sbjct: 152 PSPNPVII-TAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCG 210

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCD--TLSYARQLFDEMFQPGICDIVSWNTI 210
             SS+HA++  +G D +  V N ++  YA+     L  AR++FD M +    D+VSWN++
Sbjct: 211 ITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK----DVVSWNSM 266

Query: 211 VAAYAQSGDAEGGLMLFARM---TGDVKVQGDGVSLVNALSACASLGTWSRGK------- 260
           +A YAQ+G +   L L+ +M   +G +K   + V+L   L ACA  GT   GK       
Sbjct: 267 IALYAQNGMSADALGLYRKMLNVSGSIKC--NAVTLSAILLACAHAGTIQTGKCIHNQVV 324

Query: 261 -------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
                              +CG +E A+K F+++K K+++SW+AM+TGY   G  ++A  
Sbjct: 325 RMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALD 384

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNV 350
           +F +M +     N +T+ +V+A  +  G   +    +  M +  G+EP V
Sbjct: 385 IFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGV 434



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 108/231 (46%), Gaps = 23/231 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMR--RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           V  WN++I    +  +  +A  L+ +M+        +  T   +L AC    + + G  +
Sbjct: 260 VVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCI 319

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   G + NV+V  +++ MY++C  +  AR+ F ++ +    +I+SW+ ++  Y   
Sbjct: 320 HNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEK---NILSWSAMITGYGMH 376

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +  L +F  M    +   + ++ ++ L+AC+           G++++ +  +  MK 
Sbjct: 377 GHGQEALDIFNEMCRSGQ-NPNYITFISVLAACS---------HAGLLDKGRYWYNAMKK 426

Query: 278 K-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           +      V  +  MV    R G  ++A+ L K+M+   VK +   W A+++
Sbjct: 427 RFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMK---VKPDAAIWGALLS 474


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/676 (37%), Positives = 389/676 (57%), Gaps = 34/676 (5%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + NVF  NAL+A YA+   +  A  LFD++ QP   D+VS+NT++ AYA  GD    L L
Sbjct: 71  EPNVFSFNALIAAYAKESLIHVAHHLFDQIPQP---DLVSFNTLINAYADRGDTLSALSL 127

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNA 285
           F  M  ++ +  DG +    ++AC +          G++ +   +         VS  N+
Sbjct: 128 FGEMR-EMGLVMDGFTFSGVITACCN--------HVGLIRQLHSLAFSSGFDSYVSVKNS 178

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++T YS+ G  E+A  +F  M +E V+ + V+W+++I  Y Q   G +AL ++R M   G
Sbjct: 179 LLTYYSKNGILEEAEMVFNGMGEE-VR-DEVSWNSMIVAYGQHKRGLKALALYRDMVHRG 236

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            E ++ TL S+L+  + V  L  G + H   IK   +       +  V + LIDMYAKC 
Sbjct: 237 FEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFN------KNRHVGSGLIDMYAKCG 290

Query: 406 S-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN-DALALFPQMFQQDKLVKPNAFT 463
           + +  +R +F+ I     D+  W  MI  YSQN   + +AL  F QM  Q     P+  +
Sbjct: 291 AGMSESRKVFEEIC--GSDLVVWNTMISGYSQNKELSVEALECFRQM--QRAGYWPDDCS 346

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
             CA+ AC+ L++   G+Q HA  ++++       V N L+ MYS+ G++  AR +F  +
Sbjct: 347 FVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRM 406

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            Q N V+  S++ GY  HG+G ++   F+QM    +AP  +T + +L AC+H+G V++G 
Sbjct: 407 PQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGK 466

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           KYF+ M   FGI   AEHY+C++DLLGRA +L EA  LI+ MP  P    W ALL  CR 
Sbjct: 467 KYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRK 526

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           + N+EL E AAN+ L+LE      Y +L+++Y+ A +W++ ARIR LM+  G++K+PGCS
Sbjct: 527 YGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCS 586

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD-- 761
           W++  +    F   D +HP+ ++I+  L  +  ++K  GYVP   +A   V D+E G+  
Sbjct: 587 WIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAF--VKDDETGEQE 644

Query: 762 ---LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
              +L  HSEKLA+A+G+L T  G P+ + KNLRICGDCH+AI F+S I   +I +RD+ 
Sbjct: 645 KEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAY 704

Query: 819 RFHHFKEGSCTCKGYW 834
           RFH F++G C+C  YW
Sbjct: 705 RFHCFEDGRCSCGDYW 720



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 151/559 (27%), Positives = 237/559 (42%), Gaps = 98/559 (17%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTHVPP----SHLIAAYVSHNAPSPALSLLQRISPSP 97
           LL  +C  LT  +    Q      TH P     + LIAAY   +    A  L  +I P P
Sbjct: 51  LLYSKCNLLTTAHHAFNQ------THEPNVFSFNALIAAYAKESLIHVAHHLFDQI-PQP 103

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG--S 155
             +  +N LI          +A  LF +M   G   D +TF  V+ AC     +  G   
Sbjct: 104 -DLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITAC----CNHVGLIR 158

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +H++  SSGFDS V V N+L+  Y++   L  A  +F+ M +  + D VSWN+++ AY 
Sbjct: 159 QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEE-VRDEVSWNSMIVAYG 217

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------- 261
           Q       L L+  M      + D  +L + L+  + +   S G Q              
Sbjct: 218 QHKRGLKALALYRDMV-HRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNR 276

Query: 262 ------------CGM-MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       CG  M E++KVFE +   D+V WN M++GYS                 
Sbjct: 277 HVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYS----------------- 319

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           +N +L+V                 EAL+ FRQMQ  G  P+  + V  +S C+++ +   
Sbjct: 320 QNKELSV-----------------EALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQ 362

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK+ H   +K  +       + + V NAL+ MY+KC ++  AR +F  +   N    T  
Sbjct: 363 GKQFHALAMKSEIP-----SNQISVNNALVTMYSKCGNLQDARKLFQRMPQHN--TVTLN 415

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I  Y+Q+G   ++L LF QM      + P + TL   L ACA    +  G++   + +
Sbjct: 416 SIIAGYAQHGIGTESLNLFEQMLAAS--IAPTSITLVSILSACAHTGRVEEGKKY--FNM 471

Query: 489 RNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG---YGMHG 542
                 + P   +  C+ID+  R+G +  A  + D +       +W +L+     YG   
Sbjct: 472 MKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNME 531

Query: 543 LGDKAHWAFDQMRKEGLAP 561
           L +KA   F Q+      P
Sbjct: 532 LAEKAANQFLQLEPTNAVP 550



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 143/330 (43%), Gaps = 45/330 (13%)

Query: 103 WNALIR-RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WN +I   +    L   A   F QM R G+ PD+ +F   + AC  L S   G   HA+ 
Sbjct: 311 WNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALA 370

Query: 162 CSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             S   SN + V NAL+ MY++C  L  AR+LF  M Q    + V+ N+I+A YAQ G  
Sbjct: 371 MKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQH---NTVTLNSIIAGYAQHGIG 427

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK---- 276
              L LF +M     +    ++LV+ LSACA           G +EE KK F  MK    
Sbjct: 428 TESLNLFEQMLA-ASIAPTSITLVSILSACA---------HTGRVEEGKKYFNMMKDIFG 477

Query: 277 -VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              +   ++ M+    R G   +A  L   M           W+A++   A R +G+  L
Sbjct: 478 IEPEAEHYSCMIDLLGRAGKLSEAERLIDTM---PFSPGSAAWAALLG--ACRKYGNMEL 532

Query: 336 DVFRQMQFCGLEPN----VVTLVSLLSG------CASVGALL----LGKETHCYTI---K 378
                 QF  LEP      + L S+ S        A +  L+    + K+  C  I   K
Sbjct: 533 AEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNK 592

Query: 379 RV---LSVDGSHPDDLMVINALIDMYAKCK 405
           RV   ++ D SHP    +   L +M+ K K
Sbjct: 593 RVHVFVAEDNSHPRIKEIHMYLDEMFVKMK 622


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/719 (34%), Positives = 393/719 (54%), Gaps = 57/719 (7%)

Query: 156  SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            ++HA+   +G    +   N L+ +YA+ + +++A++LFDE+ Q    +  +W  +++ +A
Sbjct: 310  TLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQR---NTQTWTILISGFA 366

Query: 216  QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------- 260
            ++G +E    LF  M        +  +L + L  C+       GK               
Sbjct: 367  RAGSSEMVFNLFREMQAKGACP-NQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDV 425

Query: 261  -----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       +C + E A+++FE M   DVVSWN M+  Y R G  E +  +F+++  +
Sbjct: 426  VLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYK 485

Query: 310  NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
            +V    V+W+ ++ G  Q G+   AL+    M  CG E + VT    L   +S+  + LG
Sbjct: 486  DV----VSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELG 541

Query: 370  KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF-----DAIAPKNRDV 424
            ++ H   +K     DG       + ++L++MY KC  +D A ++      D +   N  V
Sbjct: 542  RQLHGMVLKFGFDSDG------FIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARV 595

Query: 425  A---------TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +         +W  M+  Y  NG   D L  F  M ++  LV  +  T++  + ACA   
Sbjct: 596  SYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRE--LVVVDIRTVTTIISACANAG 653

Query: 476  ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
             L FGR +HAYV +  +  +  +V + LIDMYS+SG +D A +VF    + N+V WTS++
Sbjct: 654  ILEFGRHVHAYVQKIGHR-IDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMI 712

Query: 536  TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            +GY +HG G  A   F++M  +G+ P+ VTFL +L ACSH+G++++G +YF  M   + I
Sbjct: 713  SGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCI 772

Query: 596  SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
            +   EH   +VDL GRA  L +    I    +     +W + L+ CR+H NVE+G+  + 
Sbjct: 773  NPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSE 832

Query: 656  RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
             LL++     G+Y LLSN+ A+  RW + AR+RSLM   GVKK+PG SW+Q K+   TF 
Sbjct: 833  MLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFV 892

Query: 716  VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
            +GDR+HPQ  +IY  L  L+ R+K +GY       + DV++E+   L+  HSEKLA+ +G
Sbjct: 893  MGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFG 952

Query: 776  ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I+ TA  TPIRI KNLRIC DCH+ I + S +++ EII+RD +RFHHFK GSC+C  YW
Sbjct: 953  IINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 248/562 (44%), Gaps = 70/562 (12%)

Query: 69  PPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
           P +HL+  Y   N  + A  L   I         W  LI    R    +  F LF +M  
Sbjct: 326 PANHLLTLYAKSNNMAHAQKLFDEIPQRNTQT--WTILISGFARAGSSEMVFNLFREMQA 383

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
           +G  P++YT   VLK C    + + G  VHA +  +G D +V + N+++ +Y +C    Y
Sbjct: 384 KGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEY 443

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM------TGDVKVQG---- 238
           A +LF+ M +    D+VSWN ++ AY ++GD E  L +F R+      + +  V G    
Sbjct: 444 AERLFELMNEG---DVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQC 500

Query: 239 --------------------DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                                 V+   AL   +SL     G+Q   M     V +     
Sbjct: 501 GYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGM-----VLKFGFDS 555

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKK-----MRQENVKLN-------VVTWSAVIAGYA 326
           D    +++V  Y + G  + A  + +      +R+ N +++       +V+W ++++GY 
Sbjct: 556 DGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYV 615

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
             G   + L  FR M    +  ++ T+ +++S CA+ G L  G+  H Y  K        
Sbjct: 616 WNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKI------G 669

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
           H  D  V ++LIDMY+K  S+D A ++F      N  +  WT MI  Y+ +G    A+ L
Sbjct: 670 HRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPN--IVMWTSMISGYALHGQGMHAIGL 727

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC--LI 504
           F +M  Q   + PN  T    L AC+    +  G + +  ++++ Y  + P V +C  ++
Sbjct: 728 FEEMLNQG--IIPNEVTFLGVLNACSHAGLIEEGCR-YFRMMKDAY-CINPGVEHCTSMV 783

Query: 505 DMYSRSGDI-DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-D 562
           D+Y R+G +  T   +F N        W S ++   +H   +   W  + + +  +AP D
Sbjct: 784 DLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQ--VAPSD 841

Query: 563 GVTFLVLLYACSHSGMVDQGLK 584
              +++L   C+ +   D+  +
Sbjct: 842 PGAYVLLSNMCASNHRWDEAAR 863


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/755 (34%), Positives = 404/755 (53%), Gaps = 93/755 (12%)

Query: 150 SSRCGSSVHAVICSSGF----DSNVFVCNALMAMYARCDTL--SYARQLFDEMFQPGICD 203
           S R  + +HAV+ +SG      S   + N+L+  +   D L   YA  LFD M     C 
Sbjct: 11  SVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRM----PCS 66

Query: 204 IVSWNTIV-AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-- 260
              ++T + A +  S   E  L+L+ RM     V  D  +       CA      RG+  
Sbjct: 67  TFLFDTALRACFRASSGPESPLILYRRMR-RTGVCTDAFTFHFLFKCCA------RGRAH 119

Query: 261 --------------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVT 288
                                           + G+  +A++ F+ + VKD V+W  +++
Sbjct: 120 VLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVIS 179

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
           G +++G  +DA+ L +     +   NV++W+ +I+GY++ G   EA+D F  M   G+EP
Sbjct: 180 GLAKLGLLDDAWCLLR----HSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEP 235

Query: 349 NVVTLVSLLSGCASVGALLLGKETH------------------------CYTIKRVLSV- 383
           + VT++ LLS CA +  L+ G+  H                        C  I R   V 
Sbjct: 236 DEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVF 295

Query: 384 ----DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
                G  P      NA+ID Y K   VDVAR +FD +  ++RD+ T+  +I  Y   G 
Sbjct: 296 DALGRGRRPQSW---NAMIDGYCKLGHVDVARYLFDQM--EDRDLVTFNSLITGYIHGGR 350

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +AL LF QM + D  ++ + FT+   L ACA L AL  GR +HA + +   E+ I ++
Sbjct: 351 LREALLLFMQMRRHD--LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDI-YL 407

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
              L+DMY + G ++ A +VF  +  R+V +W++++ G   +G+G  A   F  M+ +G 
Sbjct: 408 GTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGF 467

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ VT++ +L ACSHS ++D+G  YF+ M     I    EHY C++DLLGR+  LDEA+
Sbjct: 468 QPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAM 527

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           +L+  MPM+P  +IW ++L+ CR+H +  L   AA  LL+LE ++D  Y  L NIY ++ 
Sbjct: 528 DLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSR 587

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           +W+D ++IR LM+  GVKK  G S +        F V DRTHPQ  +I  ++  + +R+K
Sbjct: 588 QWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLK 647

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
           ++GY P TS    DVD+EEK   L  HSEK+A+A+G+++ AP  P+ I KNLR+C DCHS
Sbjct: 648 SVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHS 707

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI  IS I N EII+RD +RFHHF++G+C+C  +W
Sbjct: 708 AIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 167/591 (28%), Positives = 267/591 (45%), Gaps = 87/591 (14%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPS--HLIAAYVSHNAPSPALSL---LQRISPSPFSVFW 102
           +S+ Q   +H  ++       PPS  HL+ + V+   P+  L L   L      P S F 
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFL 69

Query: 103 WNALIRRAVRLRL-PDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSVHA 159
           ++  +R   R    P++   L+ +M R G   D +TF F+ K C  G      C   +HA
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLC-QMLHA 128

Query: 160 VICSSGFDSNV-FVCNALMAMYARCDTLSYARQLFDE---------------MFQPGICD 203
               +   S V  V N ++ MY        AR+ FD+               + + G+ D
Sbjct: 129 ACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLD 188

Query: 204 -------------IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
                        ++SW  +++ Y+++G A   +  F  M  D  ++ D V+++  LSAC
Sbjct: 189 DAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSD-GIEPDEVTVIGLLSAC 247

Query: 251 ASL----------------GTWSRGK----------QCGMMEEAKKVFERM-KVKDVVSW 283
           A L                G    GK          +CG +  A +VF+ + + +   SW
Sbjct: 248 AQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSW 307

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NAM+ GY ++G  + A  LF +M       ++VT++++I GY   G   EAL +F QM+ 
Sbjct: 308 NAMIDGYCKLGHVDVARYLFDQMEDR----DLVTFNSLITGYIHGGRLREALLLFMQMRR 363

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             L  +  T+VSLL+ CAS+GAL  G+  H    +R++ V      D+ +  AL+DMY K
Sbjct: 364 HDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEV------DIYLGTALLDMYLK 417

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V+ A ++F A++   RDV TW+ MI   + NG    AL  F   + +    +PN+ T
Sbjct: 418 CGRVEEASLVFQAMSV--RDVHTWSAMIAGLAFNGMGKAALEYF--FWMKVDGFQPNSVT 473

Query: 464 LSCALMACARLAALRFGRQI--HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
               L AC+    L  GR       +L N   ++  +   C+ID+  RSG +D A  +  
Sbjct: 474 YIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHY--GCMIDLLGRSGLLDEAMDLVR 531

Query: 522 NLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            +  Q N V W S+++   +H   + A  A + + K  L PD     V LY
Sbjct: 532 TMPMQPNAVIWASILSACRVHKDANLARNAAEHLLK--LEPDEDAVYVQLY 580


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 406/734 (55%), Gaps = 27/734 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I    +   P  AF L+ +M R G  PD  TF  +L    +  + +    +H+ I 
Sbjct: 111 WTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHII 170

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GF +++ V N+L+  Y +   L  A QLF EM      D VS+N ++  Y + G  E 
Sbjct: 171 RFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEM---PTKDSVSFNVMITGYTKYGFREE 227

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVV 281
            L LF +M  ++  Q  G +    L           G+Q  G+  +   V+      D+ 
Sbjct: 228 ALKLFMQMR-NMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVW------DIF 280

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA++  YS+     D   L K +  E  +L+ V+++ +I GYA  G   ++ D+F+++
Sbjct: 281 VANALLDFYSK----HDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRL 336

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           Q    +       ++LS  A    L +G++TH        +V  +   ++ V NAL+DMY
Sbjct: 337 QGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQ------AVVTTAVSEVQVGNALVDMY 390

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC+  + A  +F  +A +N     WT +I  Y Q G   +AL +F +M +++  V  + 
Sbjct: 391 AKCEKFEDANRIFANLAYRNS--VPWTAIISIYVQKGFHEEALKMFKEMNREN--VHGDQ 446

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T +  L A A LA++  G+Q+H+ V+R      + F  + L+DMY+  G +  A  VF 
Sbjct: 447 ATFASTLKASANLASVSLGKQLHSSVIRLGLLSSV-FSGSVLVDMYANCGSMKDAIEVFK 505

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  RN+V W +L++ Y  +G  +    +F  M + GL PD V+FL +L ACSH G+V++
Sbjct: 506 EMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEK 565

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
            L YF+SM++ + +  R +HYA ++D+L R+ R +EA  LI  MP EP  ++W ++LN C
Sbjct: 566 ALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSC 625

Query: 642 RIHANVELGELAANRLLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           RIH N +L + AA++L ++++ +D + Y  +SNIYA AG+W++ A+++  M+  GVKK  
Sbjct: 626 RIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVT 685

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
             SWV+       F   DRTHPQ+++I   +  LV+ +   GY P TS  L +VD+E K 
Sbjct: 686 AYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKI 745

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           + L  HSE+LA+A+ ++ T  G+PI I KNLR C DCH+AI  IS I+  EI +RDS+RF
Sbjct: 746 ESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRF 805

Query: 821 HHFKEGSCTCKGYW 834
           HHF++GSC+C  YW
Sbjct: 806 HHFRDGSCSCGDYW 819



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 157/310 (50%), Gaps = 15/310 (4%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +   + +A+++F+ M  ++  S N MV+GY +  +   A  LF+ M       N V+W+ 
Sbjct: 58  RANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESM----FSRNEVSWTI 113

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I GY+Q     EA +++ +M   G++P+ +T  +LLSG      L    + H + I+  
Sbjct: 114 MIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFG 173

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
            S        L+V N+L+D Y K   +D+A  +F  +  K  D  ++ VMI  Y++ G  
Sbjct: 174 FSA------SLIVFNSLVDSYCKTCCLDIASQLFSEMPTK--DSVSFNVMITGYTKYGFR 225

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL LF QM   D   +P+ FT +  L        + FG+QIH   ++  Y   I FVA
Sbjct: 226 EEALKLFMQMRNMD--FQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDI-FVA 282

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N L+D YS+   ID A+ +FD + + + VS+  ++TGY  +G  +K+   F +++     
Sbjct: 283 NALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFD 342

Query: 561 PDGVTFLVLL 570
                F  +L
Sbjct: 343 RKNFPFATML 352



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N ++  Y +S ++  AR +F+++  RN VSWT ++ GY  +    +A   + +M + G+ 
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD +TF  LL     +  + + L+    + + FG SA    +  +VD   +   LD A +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIR-FGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 621 LIEGMPMEPT 630
           L   MP + +
Sbjct: 200 LFSEMPTKDS 209


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 284/881 (32%), Positives = 445/881 (50%), Gaps = 104/881 (11%)

Query: 18  TLNHLFTNIKLFSVTTTPCIKITSLL----LRQCKSLTQVYLIHQQIIVQNLTHVPPSHL 73
           TL+    N+ L SV       + + L    L   ++L +  +    +I  N+       +
Sbjct: 46  TLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNI-------M 98

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH- 132
           +  Y    + S A+ L  R+      V  WN ++    +     NA  +F+ M + G   
Sbjct: 99  MNGYAKLGSLSDAVELFGRMPTR--DVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSL 156

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS--NVFVCNALMAMYARCDTLSYAR 190
           P+ +TF  V+K+CG L        +  ++  S FDS  +  V  AL+ M  RC  + +A 
Sbjct: 157 PNAFTFGCVMKSCGALGWHEVALQLLGLL--SKFDSQDDPDVQTALVDMLVRCGAMDFAS 214

Query: 191 QLFDEMFQPGIC----------------------------DIVSWNTIVAAYAQSGDAEG 222
           + F  +  P I                             D+VSWN +++A ++SG    
Sbjct: 215 KQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVRE 274

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +   M G   V+ D  +  ++L+ACA L +   GKQ  +     +V   +   D   
Sbjct: 275 ALDMVVDMHGK-GVRPDSTTYTSSLTACARLSSLEWGKQLHV-----QVIRNLPHIDPYV 328

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            +AMV  Y++ G F++A  +F  +R  N     V+W+ +I G+ Q G   E++++F QM+
Sbjct: 329 ASAMVELYAKCGCFKEAKRVFSSLRDRNS----VSWTVLIGGFLQYGCFSESVELFNQMR 384

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              +  +   L +L+SGC +   + LG + H   +K        H   ++V N+LI MYA
Sbjct: 385 AELMAVDQFALATLISGCCNTMDICLGSQLHSLCLK------SGHTRAVVVSNSLISMYA 438

Query: 403 KCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGS 433
           KC ++  A ++F+ +A ++                             R+V TW  M+G+
Sbjct: 439 KCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGA 498

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y Q+G   D L ++  M  + K V P+  T       CA + A + G QI  + ++    
Sbjct: 499 YIQHGAEEDGLKMYSDMLTE-KDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGL- 556

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           +L   V N +I MYS+ G I  AR  FD L ++++VSW +++TGY  HG+G +A   FD 
Sbjct: 557 ILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDD 616

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           +  +G  PD ++++ +L  CSHSG+V++G  YFD M ++  IS   EH++C+VDLLGRA 
Sbjct: 617 ILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAG 676

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            L EA  LI+ MPM+PT  +W ALL+ C+ H N +L ELAA  L +L+S   G Y LL+ 
Sbjct: 677 HLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAK 736

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA+AG+  D A++R LM+  G+KK PG SW++       F   D +HPQ   I E L  
Sbjct: 737 MYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDE 796

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           L+++I  +GYV   S          + ++   HSEKLA+A+GI++     PI I KNLRI
Sbjct: 797 LMEKIAHLGYVRTES---------PRSEI--HHSEKLAVAFGIMSLPAWMPIHIMKNLRI 845

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH+ I  IS + + E ++RD  RFHHFK GSC+C  YW
Sbjct: 846 CDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 242/514 (47%), Gaps = 90/514 (17%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF-DEMFQPG 200
           L++CG   +     ++H+ + + G  S VF+ N L+  Y  C  LS AR L  DE+ +P 
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 201 IC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFA--RM 230
           +                             D+ SWNTI++ Y QSG     L +F   R 
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 231 TGDVKVQGDGVSLVNALS------ACASLGTWSRGKQ----------------------- 261
           TGD        SL NA +      +C +LG      Q                       
Sbjct: 152 TGD--------SLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDM 203

Query: 262 ---CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
              CG M+ A K F R+K   ++  N+M+ GY++    + A  +FK M +     +VV+W
Sbjct: 204 LVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPER----DVVSW 259

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           + VI+  ++ G   EALD+   M   G+ P+  T  S L+ CA + +L  GK+ H   I+
Sbjct: 260 NMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIR 319

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            +  +D        V +A++++YAKC     A+ +F ++  ++R+  +WTV+IG + Q G
Sbjct: 320 NLPHIDP------YVASAMVELYAKCGCFKEAKRVFSSL--RDRNSVSWTVLIGGFLQYG 371

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
             ++++ LF QM  + +L+  + F L+  +  C     +  G Q+H+  L++ +   +  
Sbjct: 372 CFSESVELFNQM--RAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAV-V 428

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V+N LI MY++ G++  A ++F+ + +R++VSWT ++T Y   G   KA   FD M    
Sbjct: 429 VSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRN 488

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +    +T+  +L A    G  + GLK +  M  E
Sbjct: 489 V----ITWNAMLGAYIQHGAEEDGLKMYSDMLTE 518


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/642 (36%), Positives = 367/642 (57%), Gaps = 29/642 (4%)

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGV--SLVNALSACASLGTWSRGKQC 262
           SW   +   A  GD    + LF RM   D       V  SL  AL +CA+LG  + G   
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS-------FEDAFALFKKMRQ---ENVK 312
             +      F      D  + NA++  Y ++ +        + +  + + +R+   E  +
Sbjct: 81  HALALRSGAF-----ADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPE 135

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            +VV+W+ ++ G A+ G   EAL + R+M   G +P+  TL S+L   A    +  G E 
Sbjct: 136 KDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMEL 195

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H +  +     +G H DD+ V ++LIDMYA C   D +  +FD +    RD   W  M+ 
Sbjct: 196 HGFATR-----NGFH-DDVFVGSSLIDMYANCTRTDYSVKVFDNLPV--RDAILWNSMLA 247

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             +QNG  ++AL LF +M      +KP   T S  + AC  LA+L  G+Q+HAYV+R  +
Sbjct: 248 GCAQNGSVDEALGLFRRMLHSG--IKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGF 305

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           +  + F+++ LIDMY + G++  AR +FD ++  ++VSWT+++ G+ +HG   +A   FD
Sbjct: 306 DGNV-FISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFD 364

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M    L P+ +TFL +L ACSH+G+VD+G KYF+SMS  +GI    EH+A + D LGR 
Sbjct: 365 RMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRP 424

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            +L+EA   I GM ++PT  +W  LL  C++H N  L E  A ++ +LE    GS+ +LS
Sbjct: 425 GKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILS 484

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N Y+++GRW + A +R  M+  G++K P CSW++ K     F   D++HP  ++I + L 
Sbjct: 485 NTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALN 544

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
              +++   GYVP T     D+++E+K  +L  HSEKLA+ +GI++T PGT IR+ KNLR
Sbjct: 545 VFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLR 604

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +C DCH+   FIS I+  EI++RD+NRFHHFK+G C+C  +W
Sbjct: 605 VCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 209/488 (42%), Gaps = 102/488 (20%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE------YTFPFVLKACGELPSSRCGSS 156
           W   IR A       +A  LFL+M  R   P         + P  LK+C  L     G+S
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRM--RASDPAAACSSVLTSLPGALKSCAALGLRALGAS 79

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCD--------------TLSYARQLFDEMFQPGIC 202
           +HA+   SG  ++ F  NAL+ +Y +                 L   R++FDEM +    
Sbjct: 80  LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEK--- 136

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ- 261
           D+VSWNT+V   A+SG     L L   M  D   + D  +L + L   A      RG + 
Sbjct: 137 DVVSWNTLVLGCAESGRHGEALGLVREMWRD-GCKPDSFTLSSVLPIFAEGADVRRGMEL 195

Query: 262 -------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
                                    C   + + KVF+ + V+D + WN+M+ G ++ GS 
Sbjct: 196 HGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSV 255

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           ++A  LF++M    +K                                   P  VT  SL
Sbjct: 256 DEALGLFRRMLHSGIK-----------------------------------PMPVTFSSL 280

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           +  C ++ +LLLGK+ H Y I+      G    ++ + ++LIDMY KC +V +AR +FD 
Sbjct: 281 IPACGNLASLLLGKQLHAYVIR------GGFDGNVFISSSLIDMYCKCGNVSIARRIFDR 334

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           I  ++ D+ +WT MI  ++ +G A +AL LF +M   +  +KPN  T    L AC+    
Sbjct: 335 I--QSPDIVSWTAMIMGHALHGPAREALVLFDRMELGN--LKPNHITFLAVLTACSHAGL 390

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTS 533
           +  G +   +   + +  ++P + +   L D   R G ++ A      +K +   S W++
Sbjct: 391 VDKGWKY--FNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWST 448

Query: 534 LMTGYGMH 541
           L+    +H
Sbjct: 449 LLRACKVH 456



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 201/467 (43%), Gaps = 67/467 (14%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN L+           A  L  +M R G  PD +T   VL    E    R G  +H 
Sbjct: 138 VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               +GF  +VFV ++L+ MYA C    Y+ ++FD +    + D + WN+++A  AQ+G 
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNL---PVRDAILWNSMLAGCAQNGS 254

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
            +  L LF RM     ++   V+  + + AC +L +   GKQ                  
Sbjct: 255 VDEALGLFRRMLHS-GIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISS 313

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG +  A+++F+R++  D+VSW AM+ G++  G   +A  LF +M   N+K 
Sbjct: 314 SLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKP 373

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           N +T+ AV+   +  G   +    F  M    G+ P++    +L       G L   +E 
Sbjct: 374 NHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKL---EEA 430

Query: 373 HCY----TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           + +     IK   SV  +      ++ A         + +VA+ +FD + P  R + +  
Sbjct: 431 YNFISGMKIKPTASVWST------LLRACKVHKNTVLAEEVAKKIFD-LEP--RSMGSHI 481

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           ++  +YS +G  N+A  L   M ++    +P          AC   + +    + H +V 
Sbjct: 482 ILSNTYSSSGRWNEAAHLRKSMRKKGMQKEP----------AC---SWIEVKNKQHVFVA 528

Query: 489 RNQ----YEMLIPFVANCLIDMYSRSGDIDTARVVFDNL--KQRNVV 529
            ++    YE +I  + N   +   R G +     VF ++  +Q+N V
Sbjct: 529 HDKSHPWYERIIDAL-NVFSEQMVRQGYVPNTDDVFQDIEEEQKNSV 574


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 272/734 (37%), Positives = 395/734 (53%), Gaps = 80/734 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NALI    R  LPD A  LF +M                      PS   GS       
Sbjct: 51  YNALIAGYFRNHLPDAALGLFHRM----------------------PSRDLGSY------ 82

Query: 163 SSGFDSNVFVCNALMA-MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                      NAL+A +  R  TL  A      +  P    +VS+ +++  Y + G   
Sbjct: 83  -----------NALIAGLSLRRHTLPDAAAALASIPLPP--SVVSFTSLLRGYVRHGLLA 129

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + LF +M              N ++    LG +      G + EA+K+F+ M  KDVV
Sbjct: 130 DAIRLFHQMPER-----------NHVTYTVLLGGF---LDAGRVNEARKLFDEMPDKDVV 175

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           +  AM++GY + G   +A ALF +M     K NVV+W+A+I+GYAQ G    A  +F  M
Sbjct: 176 ARTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGKVILARKLFEVM 231

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
                + N V+  ++L G    G        H    + + +    HP  +   NA++  +
Sbjct: 232 P----DRNEVSWTAMLVGYIQAG--------HVEDAEDLFNAMPDHP--VAACNAMMVGF 277

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            +   VD A+ MF+ +    RD  TW+ MI  Y QN    +AL+ F +M  +   ++PN 
Sbjct: 278 GQHGMVDAAKAMFERMCA--RDDGTWSAMIKVYEQNEFLMEALSTFREMLCRG--IRPNY 333

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            +    L  CA LA   +GR++HA +LR  ++  + F  + LI MY + G++D A+ VF+
Sbjct: 334 TSFISILTVCAALATADYGRELHAAMLRCSFDTDV-FAVSALITMYIKCGNLDKAKRVFN 392

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
             + ++VV W S++TGY  HGLG++A   FD +R   +APDG+T++ +L ACS++G V +
Sbjct: 393 MFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKE 452

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G + F+SM     I   A HY+C+VDLLGRA  +DEA++LI  MP+EP  IIW AL+  C
Sbjct: 453 GREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGAC 512

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H N E+ E+AA +LLELE    G Y LLS+IY + GRW+D + +R  +    + K PG
Sbjct: 513 RMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPG 572

Query: 702 CSWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           CSW++  +    F  GD  +HP+   I  +L  L   +   GY    SF LHDVD+E+K 
Sbjct: 573 CSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKA 632

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             L  HSE+ A+AYG+L    G PIR+ KNLR+CGDCHSAI  I+ I + EIILRD+NRF
Sbjct: 633 QSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRF 692

Query: 821 HHFKEGSCTCKGYW 834
           HHFK+G C+C+ YW
Sbjct: 693 HHFKDGLCSCRDYW 706



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 242/516 (46%), Gaps = 53/516 (10%)

Query: 65  LTHVPPSHLIAAYVS---------HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           L H  PS  + +Y +         H  P  A +L     P P SV  + +L+R  VR  L
Sbjct: 70  LFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALAS--IPLPPSVVSFTSLLRGYVRHGL 127

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
             +A RLF QM  R    +  T+  +L   G L + R   +    +     D +V    A
Sbjct: 128 LADAIRLFHQMPER----NHVTYTVLLG--GFLDAGRVNEARK--LFDEMPDKDVVARTA 179

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           +++ Y +   ++ AR LFDEM +    ++VSW  +++ YAQ+G      ++ AR   +V 
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKR---NVVSWTAMISGYAQNGK-----VILARKLFEVM 231

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
              + VS    L             Q G +E+A+ +F  M    V + NAM+ G+ + G 
Sbjct: 232 PDRNEVSWTAMLVGYI---------QAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGM 282

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            + A A+F++M   +      TWSA+I  Y Q     EAL  FR+M   G+ PN  + +S
Sbjct: 283 VDAAKAMFERMCARDDG----TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFIS 338

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           +L+ CA++     G+E H   ++       S   D+  ++ALI MY KC ++D A+ +F+
Sbjct: 339 ILTVCAALATADYGRELHAAMLR------CSFDTDVFAVSALITMYIKCGNLDKAKRVFN 392

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
              PK  DV  W  MI  Y+Q+G   +AL +F  +  +   + P+  T    L AC+   
Sbjct: 393 MFEPK--DVVMWNSMITGYAQHGLGEEALGIFDDL--RLARMAPDGITYIGVLTACSYTG 448

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSL 534
            ++ GR+I   +  N    L     +C++D+  R+G +D A  + +N+  + + + W +L
Sbjct: 449 KVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGAL 508

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           M    MH   + A  A  ++ +  L P      VLL
Sbjct: 509 MGACRMHKNAEIAEVAAKKLLE--LEPGSAGPYVLL 542



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 32/308 (10%)

Query: 63  QNLTHVPPSHLIAA-------YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
           ++L +  P H +AA       +  H     A ++ +R+         W+A+I+   +   
Sbjct: 256 EDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGT--WSAMIKVYEQNEF 313

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
              A   F +M+ RG  P+  +F  +L  C  L ++  G  +HA +    FD++VF  +A
Sbjct: 314 LMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSA 373

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+ MY +C  L  A+++F+ MF+P   D+V WN+++  YAQ G  E  L +F  +    +
Sbjct: 374 LITMYIKCGNLDKAKRVFN-MFEPK--DVVMWNSMITGYAQHGLGEEALGIFDDLRL-AR 429

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGY 290
           +  DG++ +  L+AC+           G ++E +++F  M +   +      ++ MV   
Sbjct: 430 MAPDGITYIGVLTACS---------YTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLL 480

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
            R G  ++A  L   M    V+ + + W A++   A R H +  +      +   LEP  
Sbjct: 481 GRAGLVDEALDLINNM---PVEPDAIIWGALMG--ACRMHKNAEIAEVAAKKLLELEPGS 535

Query: 351 VTLVSLLS 358
                LLS
Sbjct: 536 AGPYVLLS 543



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 178/421 (42%), Gaps = 59/421 (14%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G +E A+  F+ M ++   S+NA++ GY R    + A  LF +M   ++     +++A
Sbjct: 29  RAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLG----SYNA 84

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL-------------- 366
           +IAG + R   H   D    +    L P+VV+  SLL G    G L              
Sbjct: 85  LIAGLSLR--RHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERN 142

Query: 367 ------LLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAP 419
                 LLG       +     +    PD D++   A++  Y +   +  AR +FD + P
Sbjct: 143 HVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEM-P 201

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           K R+V +WT MI  Y+QNG    A  LF  M        P+   +S   M    + A   
Sbjct: 202 K-RNVVSWTAMISGYAQNGKVILARKLFEVM--------PDRNEVSWTAMLVGYIQA--- 249

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G    A  L N          N ++  + + G +D A+ +F+ +  R+  +W++++  Y 
Sbjct: 250 GHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYE 309

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM------SKEF 593
            +    +A   F +M   G+ P+  +F+ +L  C+     D G +   +M      +  F
Sbjct: 310 QNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVF 369

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNGCRIHANVELGEL 652
            +SA       ++ +  +   LD+A  +      EP  ++ W +++ G   H    LGE 
Sbjct: 370 AVSA-------LITMYIKCGNLDKAKRVFN--MFEPKDVVMWNSMITGYAQHG---LGEE 417

Query: 653 A 653
           A
Sbjct: 418 A 418



 Score = 44.7 bits (104), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 42/212 (19%)

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           AN  I    R+G+I+ AR  FD +  R   S+ +L+ GY  + L D A   F +M    L
Sbjct: 20  ANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDL 79

Query: 560 A-----------------------------PDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
                                         P  V+F  LL      G++   ++ F  M 
Sbjct: 80  GSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMP 139

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           +   ++     Y  ++     A R++EA +L + MP +   +   A+L+G       + G
Sbjct: 140 ERNHVT-----YTVLLGGFLDAGRVNEARKLFDEMP-DKDVVARTAMLSG-----YCQAG 188

Query: 651 ELAANRLL--ELESEKDGSYTLLSNIYANAGR 680
            +   R L  E+      S+T + + YA  G+
Sbjct: 189 RITEARALFDEMPKRNVVSWTAMISGYAQNGK 220


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/752 (34%), Positives = 414/752 (55%), Gaps = 33/752 (4%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           AL L   ++ +    F WN +I+      L   A + + +M+  G   D +T+PFV+K+ 
Sbjct: 83  ALQLFDEMNKA--DAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSV 140

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
             + S   G  +HA++   GF S+V+VCN+L+++Y +      A ++F+EM +    DIV
Sbjct: 141 AGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPER---DIV 197

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           SWN++++ Y   GD    LMLF  M      + D  S ++AL AC+ + +   GK+    
Sbjct: 198 SWNSMISGYLALGDGFSSLMLFKEML-KCGFKPDRFSTMSALGACSHVYSPKMGKEI--- 253

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                V  R++  DV+   +++  YS+ G    A  +F  M Q N+    V W+ +I  Y
Sbjct: 254 -HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNI----VAWNVMIGCY 308

Query: 326 AQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           A+ G   +A   F++M +  GL+P+V+T ++LL       A+L G+  H Y ++R     
Sbjct: 309 ARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRR----- 359

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
           G  P  +++  ALIDMY +C  +  A V+FD +A KN  V +W  +I +Y QNG    AL
Sbjct: 360 GFLPH-MVLETALIDMYGECGQLKSAEVIFDRMAEKN--VISWNSIIAAYVQNGKNYSAL 416

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF +++  D  + P++ T++  L A A   +L  GR+IHAY+++++Y      + N L+
Sbjct: 417 ELFQELW--DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRY-WSNTIILNSLV 473

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            MY+  GD++ AR  F+++  ++VVSW S++  Y +HG G  + W F +M    + P+  
Sbjct: 474 HMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKS 533

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF  LL ACS SGMVD+G +YF+SM +E+GI    EHY C++DL+GR      A   +E 
Sbjct: 534 TFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEE 593

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MP  PT  IW +LLN  R H ++ + E AA ++ ++E +  G Y LL N+YA AGRW+DV
Sbjct: 594 MPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDV 653

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG-- 742
            RI+ LM+  G+ +    S V+ K  +  F  GDR+H  + KIYE+L  +V R+      
Sbjct: 654 NRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVL-DVVSRMVGEEDI 712

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YV   S    +   + + +    HS +LA  +G+++T  G  + +  N RIC  CH  + 
Sbjct: 713 YVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLE 772

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             S +   EI++ DS  FHHF  G C+C  YW
Sbjct: 773 KASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 171/391 (43%), Gaps = 91/391 (23%)

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW----- 318
           +ME+A ++F+ M   D   WN M+ G++  G + +A   + +M    VK +  T+     
Sbjct: 79  LMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIK 138

Query: 319 ------------------------------SAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
                                         +++I+ Y + G   +A  VF +M     E 
Sbjct: 139 SVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP----ER 194

Query: 349 NVVTLVSLLSG-----------------------------------CASVGALLLGKETH 373
           ++V+  S++SG                                   C+ V +  +GKE H
Sbjct: 195 DIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH 254

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           C+ ++  +        D+MV+ +++DMY+K   V  A  +F+ +  +N  +  W VMIG 
Sbjct: 255 CHAVRSRIET-----GDVMVMTSILDMYSKYGEVSYAERIFNGMIQRN--IVAWNVMIGC 307

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y++NG   DA   F +M +Q+ L +P+  T    L A A L     GR IH Y +R  + 
Sbjct: 308 YARNGRVTDAFLCFQKMSEQNGL-QPDVITSINLLPASAILE----GRTIHGYAMRRGF- 361

Query: 494 MLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             +P   +   LIDMY   G + +A V+FD + ++NV+SW S++  Y  +G    A   F
Sbjct: 362 --LPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELF 419

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            ++    L PD  T   +L A + S  + +G
Sbjct: 420 QELWDSSLVPDSTTIASILPAYAESLSLSEG 450


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/594 (39%), Positives = 365/594 (61%), Gaps = 24/594 (4%)

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           SLV A+S+C S+        C  +    +V + +   D    + +V+ Y ++G  EDA  
Sbjct: 124 SLVFAISSCTSV------SYCSAIH--ARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQR 175

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGC 360
           LF +M  +++    V+W+++++G + RG+    L+ F +M+   G +PN VTL+S++S C
Sbjct: 176 LFDEMPNKDL----VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 231

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A +GAL  GK  H   +K  +S          V+N+LI+MY K   +D A  +F+ +   
Sbjct: 232 ADMGALDEGKSLHGVVVKLGMSGKAK------VVNSLINMYGKLGFLDAASQLFEEMPV- 284

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            R + +W  M+  ++ NG A   + LF  M +    + P+  T+   L AC      R  
Sbjct: 285 -RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG--INPDQATMVALLRACTDTGLGRQA 341

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             IHAY+ R  +   I  +A  L+++Y++ G ++ +  +F+ +K R+ ++WT+++ GY +
Sbjct: 342 ESIHAYIHRCGFNADI-IIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAV 400

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           H  G +A   FD M KEG+  D VTF  LL ACSHSG+V++G KYF+ MS+ + +  R +
Sbjct: 401 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 460

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HY+C+VDLLGR+ RL++A ELI+ MPMEP+  +W ALL  CR++ NVELG+  A +LL L
Sbjct: 461 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 520

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           +     +Y +LSNIY+ AG W+D +++R+LMK   + + PGCS+++       F VGD+ 
Sbjct: 521 DPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 580

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP+S +I+  L  L+++I+  G  P+T F LHD+D+E K D++ +HSEKLA+A+G+L T 
Sbjct: 581 HPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTG 640

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            G P+ ITKNLRICGDCHS   F S++    II+RDS RFHHF +G C+C+ YW
Sbjct: 641 SGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 194/386 (50%), Gaps = 43/386 (11%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           F + +C  +  S C S++HA +  S   S+ F+ + L++MY +      A++LFDEM   
Sbjct: 127 FAISSCTSV--SYC-SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D+VSWN++++  +  G     L  F RM  +   Q + V+L++ +SACA +G    G
Sbjct: 184 ---DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 240

Query: 260 K-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           K       + GM  +AK V            N+++  Y ++G  + A  LF++M      
Sbjct: 241 KSLHGVVVKLGMSGKAKVV------------NSLINMYGKLGFLDAASQLFEEMPVR--- 285

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            ++V+W++++  +   G+  + +D+F  M+  G+ P+  T+V+LL  C   G     +  
Sbjct: 286 -SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 344

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H Y  +   +       D+++  AL+++YAK   ++ +  +F+ I  K+RD   WT M+ 
Sbjct: 345 HAYIHRCGFNA------DIIIATALLNLYAKLGRLNASEDIFEEI--KDRDRIAWTAMLA 396

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+ +    +A+ LF  M ++   V+ +  T +  L AC+    +  G++   + + ++ 
Sbjct: 397 GYAVHACGREAIKLFDLMVKEG--VEVDHVTFTHLLSACSHSGLVEEGKKY--FEIMSEV 452

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTA 516
             + P + +  C++D+  RSG ++ A
Sbjct: 453 YRVEPRLDHYSCMVDLLGRSGRLEDA 478



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 203/497 (40%), Gaps = 64/497 (12%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP---SHLIAAYVSHNA 82
           I ++S+  +    I+S     C S++    IH ++I ++L +        L++ Y     
Sbjct: 116 IVVYSIVQSLVFAISS-----CTSVSYCSAIHARVI-KSLNYSDGFIGDRLVSMYFKLGY 169

Query: 83  PSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM-MRRGWHPDEYTFPFV 141
              A  L   + P+   +  WN+L+               F +M    G  P+E T   V
Sbjct: 170 DEDAQRLFDEM-PNK-DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSV 227

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           + AC ++ +   G S+H V+   G      V N+L+ MY +   L  A QLF+EM    +
Sbjct: 228 VSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM---PV 284

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
             +VSWN++V  +  +G AE G+ LF  M     +  D  ++V  L AC   G    G+Q
Sbjct: 285 RSLVSWNSMVVIHNHNGYAEKGMDLFNLMK-RAGINPDQATMVALLRACTDTGL---GRQ 340

Query: 262 CGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
               E       R     D++   A++  Y+++G    +  +F++++      + + W+A
Sbjct: 341 A---ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR----DRIAWTA 393

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE-----THCY 375
           ++AGYA    G EA+ +F  M   G+E + VT   LLS C+  G +  GK+     +  Y
Sbjct: 394 MLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVY 453

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            ++  L       D L     L D Y   KS+           P       W  ++G+  
Sbjct: 454 RVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-----------PMEPSSGVWGALLGACR 502

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSC---------------ALMACARL------ 474
             G       +  Q+   D     N   LS                ALM   RL      
Sbjct: 503 VYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGC 562

Query: 475 AALRFGRQIHAYVLRNQ 491
           + +  G +IH +V+ +Q
Sbjct: 563 SFIEHGNKIHRFVVGDQ 579


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/779 (34%), Positives = 402/779 (51%), Gaps = 96/779 (12%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS--NVFVCNALMAMYARCDTLSYARQ 191
           D +     L+ C     +R G +VH  +   G     ++F  N L+ MY +   L+ AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD--------------VKVQ 237
           LFD M +    ++VS+ T+V A+AQ GD E    LF R+  +              + + 
Sbjct: 118 LFDRMPER---NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 238 GDGVSLVNALSACASLGTWSRGKQ---------------CGMMEEAKKVFERMKVKDVVS 282
            D   L   + +CA    W  G                 C ++ +A+ VF  +  KD V 
Sbjct: 175 MDAAGLAGGVHSCA----WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVV 230

Query: 283 WNAMVTGYSRIGSFEDAFALFKK--------MRQ-------------------------- 308
           W AMV+ YS     E+AF   +          RQ                          
Sbjct: 231 WTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYA 290

Query: 309 -----ENVKL--------NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
                ++ +L        +V+  S +I+ YAQ     +A ++F ++    + PN  +L S
Sbjct: 291 KCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSS 350

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           +L  C ++  L  GK+ H + IK        H  DL V NAL+D YAKC  +D +  +F 
Sbjct: 351 VLQACTNMVQLDFGKQIHNHAIKI------GHESDLFVGNALMDFYAKCNDMDSSLKIFS 404

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
           ++   N    +W  ++  +SQ+G   +AL++F +M  Q   +     T S  L ACA  A
Sbjct: 405 SLRDANE--VSWNTIVVGFSQSGLGEEALSVFCEM--QAAQMPCTQVTYSSVLRACASTA 460

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           ++R   QIH  + ++ +      + N LID Y++ G I  A  VF +L +R+++SW +++
Sbjct: 461 SIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAII 519

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           +GY +HG    A   FD+M K  +  + +TF+ LL  C  +G+V+ GL  FDSM  + GI
Sbjct: 520 SGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGI 579

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
               EHY CIV LLGRA RL++A++ I  +P  P+ ++W ALL+ C IH NV LG  +A 
Sbjct: 580 KPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAE 639

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           ++LE+E + + +Y LLSN+YA AG    VA +R  M++ GV+K PG SWV+ K     F 
Sbjct: 640 KILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFS 699

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
           VG   HP  + I  +L  L  +    GY+P  +  LHDVD E+K  +L+ HSE+LALAYG
Sbjct: 700 VGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYG 759

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++ T PG PIRI KNLR C DCH+A T IS I+  EII+RD NRFHHF++G C+C  YW
Sbjct: 760 LVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 162/362 (44%), Gaps = 70/362 (19%)

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +I R  +    + AF LFL++MR    P+EY+   VL+AC  +     G  +H      G
Sbjct: 316 MISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 375

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            +S++FV NALM  YA+C+ +  + ++F  +      + VSWNTIV  ++QSG  E  L 
Sbjct: 376 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDA---NEVSWNTIVVGFSQSGLGEEALS 432

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------------ 261
           +F  M    ++    V+  + L ACAS  +     Q                        
Sbjct: 433 VFCEMQA-AQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTY 491

Query: 262 --CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             CG + +A KVF+ +  +D++SWNA+++GY+  G   DA  LF +M + NV+ N +T+ 
Sbjct: 492 AKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFV 551

Query: 320 AVIAGYAQRG---HGHEALDVFR---------------------------QMQFCG---L 346
           A+++     G   HG    D  R                            +QF G    
Sbjct: 552 ALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPS 611

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            P+ +   +LLS C     + LG+    ++ +++L ++   P D      L +MYA   S
Sbjct: 612 APSAMVWRALLSSCIIHKNVALGR----FSAEKILEIE---PQDETTYVLLSNMYAAAGS 664

Query: 407 VD 408
           +D
Sbjct: 665 LD 666



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 44/322 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++    +  L + A  +F +M        + T+  VL+AC    S R    +H  I 
Sbjct: 414 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE 473

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S F+++  + N+L+  YA+C  +  A ++F  + +    DI+SWN I++ YA  G A  
Sbjct: 474 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMER---DIISWNAIISGYALHGQAAD 530

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L LF RM     V+ + ++ V  LS C S          G++     +F+ M++   + 
Sbjct: 531 ALELFDRMNKS-NVESNDITFVALLSVCCST---------GLVNHGLSLFDSMRIDHGIK 580

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  +V    R G   DA      +       + + W A+++      H + AL  
Sbjct: 581 PSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAP---SAMVWRALLSSCII--HKNVALGR 635

Query: 338 FRQMQFCGLEPNVVTLVSLLSGC-ASVGAL----LLGKETHCYTIKRV-----LSVDGS- 386
           F   +   +EP   T   LLS   A+ G+L    LL K      +++V     + + G  
Sbjct: 636 FSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEI 695

Query: 387 ---------HPDDLMVINALID 399
                    HP D+ VINA+++
Sbjct: 696 HAFSVGSVDHP-DMRVINAMLE 716


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 382/678 (56%), Gaps = 24/678 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +   G D + ++ N ++         +Y+ ++ D+  +P   +I  +NT++     
Sbjct: 29  IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEP---NIFLFNTMIRGLVL 85

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +   +  + ++  M  +  +  D  +    L ACA +     G +   +     V +   
Sbjct: 86  NDCFQESIEIYHSMRKE-GLSPDSFTFPFVLKACARVLDSELGVKMHSL-----VVKAGC 139

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             D     +++  Y++ G  ++AF +F  +  +N      +W+A I+GY   G   EA+D
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNF----ASWTATISGYVGVGKCREAID 195

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +FR++   GL P+  +LV +LS C   G L  G+    Y        +     ++ V  A
Sbjct: 196 MFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI------TENGMVRNVFVATA 249

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+D Y KC +++ AR +FD +  KN  + +W+ MI  Y+ NG   +AL LF +M  +   
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKN--IVSWSSMIQGYASNGLPKEALDLFFKMLNEG-- 305

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP+ + +   L +CARL AL  G      +  N++ +    +   LIDMY++ G +D A
Sbjct: 306 LKPDCYAMVGVLCSCARLGALELGDWASNLINGNEF-LDNSVLGTALIDMYAKCGRMDRA 364

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF  +++++ V W + ++G  M G    A   F QM K G+ PD  TF+ LL AC+H+
Sbjct: 365 WEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHA 424

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++G +YF+SM   F ++   EHY C+VDLLGRA  LDEA +LI+ MPME   I+W A
Sbjct: 425 GLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGA 484

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL GCR+H + +L E+   +L+ LE    G+Y LLSNIYA + +W++ A+IRS+M   GV
Sbjct: 485 LLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGV 544

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PG SW++       F VGD +HP S+KIY  L  L + +KA GYVP T   L D+++
Sbjct: 545 KKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEE 604

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EEK   +  HSEKLA+A+G+++TAP   I + KNLR+CGDCH AI  IS I   EII+RD
Sbjct: 605 EEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRD 664

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFH F +G C+CK YW
Sbjct: 665 NNRFHCFTDGLCSCKDYW 682



 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 226/450 (50%), Gaps = 36/450 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F +N +IR  V       +  ++  M + G  PD +TFPFVLKAC  +  S  G  +H
Sbjct: 72  NIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMH 131

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++  +G +++ FV  +L+ +Y +C  +  A ++FD++      +  SW   ++ Y   G
Sbjct: 132 SLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK---NFASWTATISGYVGVG 188

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                + +F R+  ++ ++ D  SLV  LSAC   G    G+        + + E   V+
Sbjct: 189 KCREAIDMFRRLL-EMGLRPDSFSLVEVLSACKRTGDLRSGEWID-----EYITENGMVR 242

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +V    A+V  Y + G+ E A ++F  M ++N+    V+WS++I GYA  G   EALD+F
Sbjct: 243 NVFVATALVDFYGKCGNMERARSVFDGMLEKNI----VSWSSMIQGYASNGLPKEALDLF 298

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDLMVINAL 397
            +M   GL+P+   +V +L  CA +GAL LG             ++G+   D+ ++  AL
Sbjct: 299 FKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNL-------INGNEFLDNSVLGTAL 351

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMYAKC  +D A  +F  +  K+R V  W   I   + +G   DAL LF QM  +   +
Sbjct: 352 IDMYAKCGRMDRAWEVFRGMRKKDRVV--WNAAISGLAMSGHVKDALGLFGQM--EKSGI 407

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE---MLIPFVAN--CLIDMYSRSGD 512
           KP+  T    L AC     +  GR+       N  E    L P + +  C++D+  R+G 
Sbjct: 408 KPDRNTFVGLLCACTHAGLVEEGRRYF-----NSMECVFTLTPEIEHYGCMVDLLGRAGC 462

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           +D A  +  ++  + N + W +L+ G  +H
Sbjct: 463 LDEAHQLIKSMPMEANAIVWGALLGGCRLH 492


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/669 (37%), Positives = 384/669 (57%), Gaps = 41/669 (6%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + NV   N L++ Y +   +  AR +F+ M +    ++VSW  +V  Y Q G       L
Sbjct: 76  ERNVVSWNGLVSGYIKNRMIVEARNVFELMPER---NVVSWTAMVKGYMQEGMVGEAESL 132

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F RM              N +S     G        G +++A+K+++ M VKDVV+   M
Sbjct: 133 FWRMPER-----------NEVSWTVMFGGLIDD---GRIDKARKLYDMMPVKDVVASTNM 178

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G  R G  ++A  +F +MR+ NV    VTW+ +I GY Q       +DV R++     
Sbjct: 179 IGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNR----VDVARKLFEVMP 230

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           E   V+  S+L G    G +   +E           V    P  ++  NA+I  + +   
Sbjct: 231 EKTEVSWTSMLLGYTLSGRIEDAEE--------FFEVMPMKP--VIACNAMIVGFGEVGE 280

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  AR +FD +  ++RD ATW  MI +Y + G   +AL LF QM +Q   V+P+  +L  
Sbjct: 281 ISKARRVFDLM--EDRDNATWRGMIKAYERKGFELEALDLFAQMQKQG--VRPSFPSLIS 336

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L  CA LA+L++GRQ+HA+++R Q++  + +VA+ L+ MY + G++  A++VFD    +
Sbjct: 337 ILSVCATLASLQYGRQVHAHLVRCQFDDDV-YVASVLMTMYVKCGELVKAKLVFDRFSSK 395

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           +++ W S+++GY  HGLG++A   F +M   G  P+ VT + +L ACS++G +++GL+ F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           +SM  +F ++   EHY+C VD+LGRA ++D+A+ELIE M ++P   +W ALL  C+ H+ 
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSR 515

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           ++L E+AA +L E E +  G+Y LLS+I A+  +W DVA +R  M+   V K PGCSW++
Sbjct: 516 LDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIE 575

Query: 707 GKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
             +    F  G  + HP+   I  +L      ++  GY P  S  LHDVD+EEK D L  
Sbjct: 576 VGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSR 635

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+AYG+L    G PIR+ KNLR+CGDCH+AI  IS +   EIILRD+NRFHHF  
Sbjct: 636 HSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNN 695

Query: 826 GSCTCKGYW 834
           G C+C+ YW
Sbjct: 696 GECSCRDYW 704



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 21/227 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I+   R      A  LF QM ++G  P   +   +L  C  L S + G  VHA + 
Sbjct: 299 WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLV 358

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              FD +V+V + LM MY +C  L  A+ +FD        DI+ WN+I++ YA  G  E 
Sbjct: 359 RCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK---DIIMWNSIISGYASHGLGEE 415

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M        + V+L+  L+AC+           G +EE  ++FE M+ K  V+
Sbjct: 416 ALKIFHEMPSS-GTMPNKVTLIAILTACS---------YAGKLEEGLEIFESMESKFCVT 465

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                ++  V    R G  + A  L + M    +K +   W A++  
Sbjct: 466 PTVEHYSCTVDMLGRAGQVDKAMELIESM---TIKPDATVWGALLGA 509



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 33/259 (12%)

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I   ++   ++ AR  FD++  K   + +W  ++  Y  NG   +A  LF +M +++ +V
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKA--IGSWNSIVSGYFSNGLPKEARQLFDEMSERN-VV 80

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML-----IPFVANCLIDMYSRSGD 512
             N             ++     R I     RN +E++     + + A  ++  Y + G 
Sbjct: 81  SWNGL-----------VSGYIKNRMI--VEARNVFELMPERNVVSWTA--MVKGYMQEGM 125

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           +  A  +F  + +RN VSWT +  G    G  DKA   +D M       D V    ++  
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMP----VKDVVASTNMIGG 181

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
               G VD+    FD M +   ++     +  ++    + NR+D A +L E MP E T +
Sbjct: 182 LCREGRVDEARLIFDEMRERNVVT-----WTTMITGYRQNNRVDVARKLFEVMP-EKTEV 235

Query: 633 IWVALLNGCRIHANVELGE 651
            W ++L G  +   +E  E
Sbjct: 236 SWTSMLLGYTLSGRIEDAE 254



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 104/261 (39%), Gaps = 63/261 (24%)

Query: 487 VLRNQYEMLIPFVANCLIDM--YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
           +LR  Y  L     NC  ++   SR G I+ AR  FD+L+ + + SW S+++GY  +GL 
Sbjct: 7   ILRRTY--LTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLP 64

Query: 545 DKAHWAFDQMRKEG-------------------------LAPDG--VTFLVLLYACSHSG 577
            +A   FD+M +                           L P+   V++  ++      G
Sbjct: 65  KEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEG 124

Query: 578 MVDQGLKYFDSMSKEFGIS-----------ARAEHYACIVDL---------------LGR 611
           MV +    F  M +   +S            R +    + D+               L R
Sbjct: 125 MVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCR 184

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK-DGSYTL 670
             R+DEA  + + M  E   + W  ++ G R +  V++    A +L E+  EK + S+T 
Sbjct: 185 EGRVDEARLIFDEM-RERNVVTWTTMITGYRQNNRVDV----ARKLFEVMPEKTEVSWTS 239

Query: 671 LSNIYANAGRWKDVARIRSLM 691
           +   Y  +GR +D      +M
Sbjct: 240 MLLGYTLSGRIEDAEEFFEVM 260


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/717 (36%), Positives = 397/717 (55%), Gaps = 31/717 (4%)

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           L+ ++ R G   + + F   LK    L  +     +H+ I   G+DSN FV  AL+  Y+
Sbjct: 133 LYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYS 192

Query: 182 RCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQG 238
            C ++  AR +F+ +    +C DIV W  IV+ Y ++G  E  L L +  RM G      
Sbjct: 193 VCGSVDSARTVFEGI----LCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAG---FMP 245

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           +  +   AL A   LG +   K         ++ +   V D      ++  Y+++G   D
Sbjct: 246 NNYTFDTALKASIGLGAFDFAKGV-----HGQILKTCYVLDPRVGVGLLQLYTQLGDMSD 300

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           AF +F +M     K +VV WS +IA + Q G  +EA+D+F +M+   + PN  TL S+L+
Sbjct: 301 AFKVFNEMP----KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILN 356

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
           GCA      LG++ H   +K    +D      + V NALID+YAKC+ +D A  +F  ++
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLD------IYVSNALIDVYAKCEKMDTAVKLFAELS 410

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            KN    +W  +I  Y   G    A ++F +  +    V     T S AL ACA LA++ 
Sbjct: 411 SKNE--VSWNTVIVGYENLGEGGKAFSMFREALRNQ--VSVTEVTFSSALGACASLASMD 466

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            G Q+H   ++      +  V+N LIDMY++ GDI  A+ VF+ ++  +V SW +L++GY
Sbjct: 467 LGVQVHGLAIKTNNAKKVA-VSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGY 525

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
             HGLG +A    D M+     P+G+TFL +L  CS++G++DQG + F+SM ++ GI   
Sbjct: 526 STHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPC 585

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHY C+V LLGR+ +LD+A++LIEG+P EP+ +IW A+L+      N E    +A  +L
Sbjct: 586 LEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEIL 645

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           ++  + + +Y L+SN+YA A +W +VA IR  MK  GVKK PG SW++ +     F VG 
Sbjct: 646 KINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGL 705

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
             HP  + I  +L  L  +    GYVP  +  L D+DDEEK   L+ HSE+LALAYG++ 
Sbjct: 706 SDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVR 765

Query: 779 TAPG-TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                  I I KNLRIC DCHSA+  IS I+  ++++RD NRFHHF  G C+C  +W
Sbjct: 766 MPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 218/467 (46%), Gaps = 28/467 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI AY    +   A ++ + I      V  W  ++   V     +++ +L   M   G+ 
Sbjct: 187 LINAYSVCGSVDSARTVFEGILCKDIVV--WAGIVSCYVENGYFEDSLKLLSCMRMAGFM 244

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ YTF   LKA   L +      VH  I  + +  +  V   L+ +Y +   +S A ++
Sbjct: 245 PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKV 304

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F+EM +    D+V W+ ++A + Q+G     + LF RM  +  V  +  +L + L+ CA 
Sbjct: 305 FNEMPKN---DVVPWSFMIARFCQNGFCNEAVDLFIRMR-EAFVVPNEFTLSSILNGCAI 360

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                 GK  G+ E+   +  ++    D+   NA++  Y++    + A  LF ++  +  
Sbjct: 361 ------GKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK-- 412

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             N V+W+ VI GY   G G +A  +FR+     +    VT  S L  CAS+ ++ LG +
Sbjct: 413 --NEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQ 470

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   IK       ++   + V N+LIDMYAKC  +  A+ +F+ +  +  DVA+W  +I
Sbjct: 471 VHGLAIKT------NNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM--ETIDVASWNALI 522

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             YS +G    AL +   M  +D+  KPN  T    L  C+    +  G++    ++R+ 
Sbjct: 523 SGYSTHGLGRQALRILDIM--KDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDH 580

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG 537
                     C++ +  RSG +D A  + + +  + +V+ W ++++ 
Sbjct: 581 GIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSA 627



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 165/336 (49%), Gaps = 20/336 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ +I R  +    + A  LF++M      P+E+T   +L  C     S  G  +H ++ 
Sbjct: 316 WSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GFD +++V NAL+ +YA+C+ +  A +LF E+      + VSWNT++  Y   G+   
Sbjct: 376 KVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK---NEVSWNTVIVGYENLGEGGK 432

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              +F R     +V    V+  +AL ACASL +   G Q   +       +    K V  
Sbjct: 433 AFSMF-REALRNQVSVTEVTFSSALGACASLASMDLGVQVHGL-----AIKTNNAKKVAV 486

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N+++  Y++ G  + A ++F +M      ++V +W+A+I+GY+  G G +AL +   M+
Sbjct: 487 SNSLIDMYAKCGDIKFAQSVFNEMET----IDVASWNALISGYSTHGLGRQALRILDIMK 542

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
               +PN +T + +LSGC++ G +  G+E  C+  + ++   G  P  L     ++ +  
Sbjct: 543 DRDCKPNGLTFLGVLSGCSNAGLIDQGQE--CF--ESMIRDHGIEP-CLEHYTCMVRLLG 597

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMI-GSYSQN 437
           +   +D A  + + I P    V  W  M+  S +QN
Sbjct: 598 RSGQLDKAMKLIEGI-PYEPSVMIWRAMLSASMNQN 632



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 15/226 (6%)

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           ++L  C      +  K  HC  +K+   +D      L   N L++ Y K      A  +F
Sbjct: 54  AMLRRCIQKNDPISAKAIHCDILKKGSCLD------LFATNILLNAYVKAGFDKDALNLF 107

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D +  +N       V   + +Q     D + L+ ++ ++   + P+ FT    L     L
Sbjct: 108 DEMPERN------NVSFVTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLF--VSL 159

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
                   +H+ +++  Y+    FV   LI+ YS  G +D+AR VF+ +  +++V W  +
Sbjct: 160 DKAEICPWLHSPIVKLGYDS-NAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGI 218

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           ++ Y  +G  + +      MR  G  P+  TF   L A    G  D
Sbjct: 219 VSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFD 264


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/668 (37%), Positives = 383/668 (57%), Gaps = 41/668 (6%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + N+   N L++ Y +   +  AR +F+ M +    ++VSW  +V  Y Q G      +L
Sbjct: 76  ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPER---NVVSWTAMVKGYVQEGMVVEAELL 132

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F RM              N +S     G    G   G +++A+K+++ M  KDVV+   M
Sbjct: 133 FWRMPER-----------NEVSWTVMFGGLIDG---GRIDDARKLYDMMPGKDVVASTNM 178

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G  R G  ++A  +F +MR+ NV    +TW+ +I GY Q    ++ +DV R++     
Sbjct: 179 IGGLCREGRVDEAREIFDEMRERNV----ITWTTMITGYGQ----NKRVDVARKLFEVMP 230

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           E   V+  S+L G    G +   +E           V    P  ++  NA+I    +   
Sbjct: 231 EKTEVSWTSMLLGYTLSGRIEDAEE--------FFEVMPMKP--VIACNAMIVALGEVGE 280

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  AR +FD +  ++RD ATW  MI +Y + G   +AL LF QM +Q   V+P+  +L  
Sbjct: 281 IVKARRVFDQM--EDRDNATWRGMIKAYERKGFELEALELFAQMQRQG--VRPSFPSLIS 336

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L  CA LA+L++GRQ+HA+++R Q++  + +VA+ L+ MY + G++  A++VFD    +
Sbjct: 337 ILSVCATLASLQYGRQVHAHLVRCQFDGDV-YVASVLMTMYVKCGELVKAKLVFDRFPSK 395

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           +++ W S+++GY  HGLG++A   F +M   G  P+ VT + +L ACS+ G +++GL+ F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIF 455

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           +SM  +F ++   EHY+C VD+LGRA ++D+A+ELI  M ++P   +W ALL  C+ H+ 
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSR 515

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           ++L E+AA +L E+E E  G Y LLS+I A+  +W DVA +R  M+   V K PGCSW++
Sbjct: 516 LDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIE 575

Query: 707 GKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
             +    F  G  R HP+   I  +L      ++  GY P  S  LHDVD+EEK D L  
Sbjct: 576 VGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSR 635

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+AYG+L    G PIR+ KNLR+CGDCH+AI  IS +   EIILRD+NRFHHF  
Sbjct: 636 HSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNN 695

Query: 826 GSCTCKGY 833
           G C+C+ Y
Sbjct: 696 GECSCRDY 703



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 48/342 (14%)

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           SR  + G + EA+K F+ ++ K + SWN++V+GY   G   +A  +F +M +     N+V
Sbjct: 25  SRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPER----NIV 80

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG------- 369
           +W+ +++GY +     EA +VF  M     E NVV+  +++ G    G ++         
Sbjct: 81  SWNGLVSGYIKNRMIEEARNVFEIMP----ERNVVSWTAMVKGYVQEGMVVEAELLFWRM 136

Query: 370 --KETHCYTIKRVLSVDGSHPDDLMVINALI---DMYAK-------CKS--VDVARVMFD 415
             +    +T+     +DG   DD   +  ++   D+ A        C+   VD AR +FD
Sbjct: 137 PERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFD 196

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN---AFTLSCALMACA 472
            +  + R+V TWT MI  Y QN   + A  LF  M ++ ++   +    +TLS       
Sbjct: 197 EM--RERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLS------- 247

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
                  GR   A        M      N +I      G+I  AR VFD ++ R+  +W 
Sbjct: 248 -------GRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWR 300

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            ++  Y   G   +A   F QM+++G+ P   + + +L  C+
Sbjct: 301 GMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCA 342



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 25/229 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  +I+   R      A  LF QM R+G  P   +   +L  C  L S + G  VHA + 
Sbjct: 299 WRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLV 358

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              FD +V+V + LM MY +C  L  A+ +FD        DI+ WN+I++ YA  G  E 
Sbjct: 359 RCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSK---DIIMWNSIISGYASHGLGEE 415

Query: 223 GLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
            L +F  M  +G +    + V+L+  L+AC S G        G +EE  ++FE M+ K  
Sbjct: 416 ALKVFHEMPLSGTMP---NKVTLIAILTAC-SYG--------GKLEEGLEIFESMESKFC 463

Query: 281 VS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           V+     ++  V    R G  + A  L   M    +K +   W A++  
Sbjct: 464 VTPTVEHYSCTVDMLGRAGKVDKAMELINSM---TIKPDATVWGALLGA 509



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           I   SR G I+ AR  FD+L+ + + SW S+++GY  +GL  +A   FD+M +  +    
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI---- 79

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           V++  L+     + M+++    F+ M +   +S     +  +V    +   + EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYVQEGMVVEAELLFW 134

Query: 624 GMPMEPTPIIWVALLNG 640
            MP E   + W  +  G
Sbjct: 135 RMP-ERNEVSWTVMFGG 150


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/665 (36%), Positives = 385/665 (57%), Gaps = 35/665 (5%)

Query: 176 LMAMYARCDTLSYARQLFDEM-FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           +   Y +  +L  A + F+ + F+    ++ SWNTI+A+++++      L LF RM  + 
Sbjct: 53  IFGAYIQLGSLHVASKAFNHITFE----NLHSWNTILASHSKNKCFYDVLQLFKRMLKEG 108

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTG 289
           K+  D  +LV A+ AC  L  +          +  K+F  + +K     D     A++  
Sbjct: 109 KLV-DSFNLVFAVKACFGLSLF----------QGAKLFHSLAIKLRLEGDPYVAPALMNV 157

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+ +GS E+A  +F+++  +N     V W  +I G+          ++F +M+  G E +
Sbjct: 158 YTELGSLEEAHKVFEEVPLKNS----VIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELD 213

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
              +  L+  C +V A   GK  H   IK+   +D     +  +  +L+DMY KC  +D 
Sbjct: 214 PFVVEGLIQACGNVYAGKEGKTFHGLCIKKNF-ID----SNFFLQTSLVDMYMKCGFLDF 268

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A  +F+ I+   RDV  W+ +I  +++NG A +++++F QM      V PN+ T +  ++
Sbjct: 269 ALKLFEEIS--YRDVVVWSAIIAGFARNGRALESISMFRQMLADS--VTPNSVTFASIVL 324

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC+ L +L+ GR +H Y++RN  E+ +    +  IDMY++ G I TA  VF  + ++NV 
Sbjct: 325 ACSSLGSLKQGRSVHGYMIRNGVELDVKNYTS-FIDMYAKCGCIVTAYRVFCQIPEKNVF 383

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW++++ G+GMHGL  +A   F +MR     P+ VTF+ +L ACSHSG +++G  +F SM
Sbjct: 384 SWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSM 443

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
           S+++GI+   EHYAC+VDLLGRA ++DEA+  I  MP EP    W ALL  CRIH   EL
Sbjct: 444 SRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAEL 503

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
            E  A +LL LES++ G Y +LSNIYA+ G W+ V + R  M   G+ K  G + ++ +E
Sbjct: 504 AEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEE 563

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F   DR   ++ +I  +   L +R++ +GYVP   F LHDVDDE K ++L  HSEK
Sbjct: 564 KLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEK 623

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+ +G+L +  G PIRITKN+R+CGDCH+A  FIS+I   +II+RD  RFHH ++G C+
Sbjct: 624 LAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCS 683

Query: 830 CKGYW 834
           C  YW
Sbjct: 684 CGDYW 688



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 225/529 (42%), Gaps = 81/529 (15%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L R  K+L   + ++ QI+V  L  + +    +  AY+   +   A      I+    ++
Sbjct: 21  LFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFE--NL 78

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
             WN ++    + +   +  +LF +M++ G   D +   F +KAC  L   +     H++
Sbjct: 79  HSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSL 138

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
                 + + +V  ALM +Y    +L  A ++F+E+    + + V W  ++  +    + 
Sbjct: 139 AIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEV---PLKNSVIWGVMIKGHLNFSEE 195

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------------- 260
            G   LF+RM      + D   +   + AC ++     GK                    
Sbjct: 196 FGVFELFSRMRRS-GFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQT 254

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG ++ A K+FE +  +DVV W+A++ G++R G   ++ ++F++M  ++V  
Sbjct: 255 SLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTP 314

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N VT+++++                                     C+S+G+L  G+  H
Sbjct: 315 NSVTFASIVL-----------------------------------ACSSLGSLKQGRSVH 339

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y I+  + +D  +        + IDMYAKC  +  A  +F  I  KN  V +W+ MI  
Sbjct: 340 GYMIRNGVELDVKN------YTSFIDMYAKCGCIVTAYRVFCQIPEKN--VFSWSTMING 391

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           +  +G   +AL LF +M   ++L  PN+ T    L AC+    +  G      + R+   
Sbjct: 392 FGMHGLCAEALNLFYEMRSVNQL--PNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGI 449

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMH 541
             +     C++D+  R+G ID A    +N+  +    +W +L+    +H
Sbjct: 450 TPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIH 498


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 352/575 (61%), Gaps = 16/575 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG + +A+KVF+ M  +D+ SWN MV GY+ +G  E+A  LF +M +++      +W+A
Sbjct: 132 KCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS----YSWTA 187

Query: 321 VIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           ++ GY ++    EAL ++  MQ      PN+ T+   ++  A+V  +  GKE H + ++ 
Sbjct: 188 MVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA 247

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L        D ++ ++L+DMY KC  +D AR +FD I  K  DV +WT MI  Y ++  
Sbjct: 248 GLD------SDEVLWSSLMDMYGKCGCIDEARNIFDKIVEK--DVVSWTSMIDRYFKSSR 299

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +  +LF ++    +  +PN +T +  L ACA L     G+Q+H Y+ R  ++    F 
Sbjct: 300 WREGFSLFSELVGSCE--RPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPY-SFA 356

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           ++ L+DMY++ G+I++A+ V D   + ++VSWTSL+ G   +G  D+A   FD + K G 
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGT 416

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD VTF+ +L AC+H+G+V++GL++F S++++  +S  ++HY C+VDLL R+ R ++  
Sbjct: 417 KPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLK 476

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I  MPM+P+  +W ++L GC  + N++L E AA  L ++E E   +Y  ++NIYA AG
Sbjct: 477 SVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAG 536

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           +W++  ++R  M+  GV KRPG SW + K     F   D +HP   +I E L  L +++K
Sbjct: 537 KWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMK 596

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVP TS  LHDV+DE+K + L  HSEKLA+A+ IL+T  GT I++ KNLR C DCH 
Sbjct: 597 EEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHG 656

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI FIS I   +I +RDS RFH F+ G C+C  YW
Sbjct: 657 AIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 227/507 (44%), Gaps = 48/507 (9%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            R  +Q++ R   P   T+  +++ C +  +   G  VH  I +SGF   + + N L+ M
Sbjct: 70  LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRM 129

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--------- 230
           YA+C +L  AR++FDEM    +C   SWN +V  YA+ G  E    LF  M         
Sbjct: 130 YAKCGSLVDARKVFDEMPNRDLC---SWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWT 186

Query: 231 ---TGDVKVQGDGVSLV-------------NALSACASLGTWSRGKQCGMMEEAKKVFER 274
              TG VK      +LV             N  +   ++   +  K     +E      R
Sbjct: 187 AMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVR 246

Query: 275 MKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             +  D V W++++  Y + G  ++A  +F K+    V+ +VV+W+++I  Y +     E
Sbjct: 247 AGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI----VEKDVVSWTSMIDRYFKSSRWRE 302

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
              +F ++      PN  T   +L+ CA +    LGK+ H Y + RV    G  P     
Sbjct: 303 GFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGY-MTRV----GFDPYSF-A 356

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            ++L+DMY KC +++ A+ + D   PK  D+ +WT +IG  +QNG  ++AL  F  + + 
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDG-CPKP-DLVSWTSLIGGCAQNGQPDEALKYFDLLLKS 414

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
               KP+  T    L AC     +  G +    +              CL+D+ +RSG  
Sbjct: 415 G--TKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472

Query: 514 DTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VTFLVLLY 571
           +  + V   +  + +   W S++ G   +G  D A  A  ++ K  + P+  VT++ +  
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYVTMAN 530

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISAR 598
             + +G  ++  K    M +E G++ R
Sbjct: 531 IYAAAGKWEEEGKMRKRM-QEIGVTKR 556



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 156/325 (48%), Gaps = 41/325 (12%)

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           +P   T  +L+  C+   AL  GK+ H +     +   G  P  +++ N L+ MYAKC S
Sbjct: 82  KPPASTYCNLIQVCSQTRALEEGKKVHEH-----IRTSGFVPG-IVIWNRLLRMYAKCGS 135

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL---------- 456
           +  AR +FD +   NRD+ +W VM+  Y++ G   +A  LF +M ++D            
Sbjct: 136 LVDARKVFDEMP--NRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYV 193

Query: 457 --------------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
                                +PN FT+S A+ A A +  +R G++IH +++R   +   
Sbjct: 194 KKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDS-D 252

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             + + L+DMY + G ID AR +FD + +++VVSWTS++  Y       +    F ++  
Sbjct: 253 EVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVG 312

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
               P+  TF  +L AC+     + G +    M++  G    +   + +VD+  +   ++
Sbjct: 313 SCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR-VGFDPYSFASSSLVDMYTKCGNIE 371

Query: 617 EAVELIEGMPMEPTPIIWVALLNGC 641
            A  +++G P +P  + W +L+ GC
Sbjct: 372 SAKHVVDGCP-KPDLVSWTSLIGGC 395



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 187/424 (44%), Gaps = 31/424 (7%)

Query: 35  PCIKITSLLLR---QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQ 91
           P I I + LLR   +C SL     +  ++  ++L     + ++  Y        A  L  
Sbjct: 118 PGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDL--CSWNVMVNGYAEVGLLEEARKLFD 175

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPS 150
            ++      + W A++   V+   P+ A  L+  M R     P+ +T    + A   +  
Sbjct: 176 EMTEK--DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKC 233

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
            R G  +H  I  +G DS+  + ++LM MY +C  +  AR +FD++ +    D+VSW ++
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEK---DVVSWTSM 290

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAK 269
           +  Y +S     G  LF+ + G  + + +  +    L+ACA L T   GKQ  G M   +
Sbjct: 291 IDRYFKSSRWREGFSLFSELVGSCE-RPNEYTFAGVLNACADLTTEELGKQVHGYM--TR 347

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
             F+          +++V  Y++ G+ E A    K +     K ++V+W+++I G AQ G
Sbjct: 348 VGFDPYSFAS----SSLVDMYTKCGNIESA----KHVVDGCPKPDLVSWTSLIGGCAQNG 399

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE-THCYTIKRVLSVDGSHP 388
              EAL  F  +   G +P+ VT V++LS C   G +  G E  +  T K  LS    H 
Sbjct: 400 QPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDH- 458

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
                   L+D+ A+    +  + +   + P       W  ++G  S  G  + A     
Sbjct: 459 -----YTCLVDLLARSGRFEQLKSVISEM-PMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 512

Query: 449 QMFQ 452
           ++F+
Sbjct: 513 ELFK 516



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 16/267 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W ++I R  +       F LF +++     P+EYTF  VL AC +L +   G  VH 
Sbjct: 284 VVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHG 343

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GFD   F  ++L+ MY +C  +  A+ + D   +P   D+VSW +++   AQ+G 
Sbjct: 344 YMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKP---DLVSWTSLIGGCAQNGQ 400

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F  +      + D V+ VN LSAC   G   +G     +E    + E+ ++  
Sbjct: 401 PDEALKYFDLLLKS-GTKPDHVTFVNVLSACTHAGLVEKG-----LEFFYSITEKHRLSH 454

Query: 280 VVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
               +  +V   +R G FE   ++  +M  +  K     W++V+ G +  G+   A +  
Sbjct: 455 TSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKF---LWASVLGGCSTYGNIDLAEEAA 511

Query: 339 RQMQFCGLEP-NVVTLVSLLSGCASVG 364
           +++    +EP N VT V++ +  A+ G
Sbjct: 512 QEL--FKIEPENPVTYVTMANIYAAAG 536


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/739 (36%), Positives = 410/739 (55%), Gaps = 36/739 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSVHAV 160
           W A+     R      A  L  +M+  G  P+ +T      AC  GEL  S  G+ +   
Sbjct: 114 WTAMAFCLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFA 173

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I +  + ++V V  AL+ M+AR   L  AR++F+ + +     +V W  ++  Y Q G A
Sbjct: 174 IKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVER---TVVVWTLMITRYVQGGCA 230

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              + LF  M  D   + DG ++ + +SACA  G+   G+Q   +     V     V D 
Sbjct: 231 GKAVELFLGMLED-GFEPDGYTMSSMVSACAEQGSAGLGQQLHSL-----VLRLGLVSDT 284

Query: 281 VSWNAMVTGYSRIG---SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGHEALD 336
                +V  Y+++    S E A  +FK+M   NV    ++W+A+I+GY Q  G  + A++
Sbjct: 285 CVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNV----MSWTALISGYVQCGGQENNAVE 340

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +  +M    +EPN +T  SLL  CA++     G++ H   +K  +       +  +V NA
Sbjct: 341 LLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIG------NVNVVGNA 394

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+ MYA+   ++ AR  FD +  +N  + + +  IG   + G +N + +   Q+   D  
Sbjct: 395 LVSMYAESGCMEEARKAFDQLYERN--LLSTSSDIG---ETGRSNASWS--SQIESMD-- 445

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V  + FT +  L A A +     G+Q+HA  ++  +E     ++N L+ MYSR G +D A
Sbjct: 446 VGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFES-DKGISNSLVSMYSRCGYLDDA 504

Query: 517 RVVFDNLKQ-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
              FD ++   NV+SWTS+++    HG  ++A   F  M   G+ P+ VT++ +L ACSH
Sbjct: 505 CRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSH 564

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+V +G +YF SM K+  +  R EHYAC+VDLL R+  + EA+E I  MP +   ++W 
Sbjct: 565 VGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWK 624

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            LL  CR + N+E+GE+AA  +++LE +    Y LLSN+YA+ G W +VARIRSLM+H  
Sbjct: 625 TLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRN 684

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           + K  G SW+        F  GD +HP++Q+IY  LA L++ IK +GYVP TS  LHD+ 
Sbjct: 685 LSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMS 744

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           D+ K   L +HSEK+A+A+G++TT P  PIRI KNLR+C DCHSAI +IS     EIILR
Sbjct: 745 DKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILR 804

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           DSNRFH  K+G C+C  YW
Sbjct: 805 DSNRFHRMKDGKCSCGEYW 823



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 231/489 (47%), Gaps = 35/489 (7%)

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            D++  V N+L+ MY++C  +  AR++FD M   G+ D+VSW  +     ++G  +  L+
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGM--RGLRDLVSWTAMAFCLTRNGAEQEALV 132

Query: 226 LFARMTGDVKVQGDGVSLVNALSAC--ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW 283
           L   M  +  ++ +  +L  A  AC    L   S G   G       +       DV   
Sbjct: 133 LLGEML-ESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGF-----AIKTGFWGTDVSVG 186

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
            A++  ++R G    A  +F  +    V+  VV W+ +I  Y Q G   +A+++F  M  
Sbjct: 187 CALIDMFARNGDLVAARKVFNGL----VERTVVVWTLMITRYVQGGCAGKAVELFLGMLE 242

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G EP+  T+ S++S CA  G+  LG++ H   ++  L        D  V   L+DMY K
Sbjct: 243 DGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGL------VSDTCVSCGLVDMYTK 296

Query: 404 C---KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG-ANDALALFPQMFQQDKLVKP 459
               +S++ AR +F  +   N  V +WT +I  Y Q GG  N+A+ L  +M  +   ++P
Sbjct: 297 LQMEQSMECARKVFKRMPTHN--VMSWTALISGYVQCGGQENNAVELLCEMLNES--IEP 352

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N  T S  L ACA L+    GRQIHA V++      +  V N L+ MY+ SG ++ AR  
Sbjct: 353 NHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGN-VNVVGNALVSMYAESGCMEEARKA 411

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD L +RN++S +S +   G       A W+  Q+    +     TF  LL A +  G+ 
Sbjct: 412 FDQLYERNLLSTSSDIGETGR----SNASWS-SQIESMDVGVSTFTFASLLSAAATVGLP 466

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +G +   ++S + G  +       +V +  R   LD+A    + M  +   I W ++++
Sbjct: 467 TKG-QQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIIS 525

Query: 640 GCRIHANVE 648
               H + E
Sbjct: 526 ALAKHGHAE 534



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/513 (26%), Positives = 242/513 (47%), Gaps = 48/513 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  +I R V+      A  LFL M+  G+ PD YT   ++ AC E  S+  G  +H
Sbjct: 213 TVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLH 272

Query: 159 AVICSSGFDSNVFVCNALMAMYARC---DTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           +++   G  S+  V   L+ MY +     ++  AR++F  M      +++SW  +++ Y 
Sbjct: 273 SLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH---NVMSWTALISGYV 329

Query: 216 QSGDAE-GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           Q G  E   + L   M  +  ++ + ++  + L ACA+L     G+Q      A+ +   
Sbjct: 330 QCGGQENNAVELLCEMLNE-SIEPNHLTYSSLLKACANLSDQDSGRQI----HARVMKTS 384

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           +   +VV  NA+V+ Y+  G  E+A   F ++ +     N+++ S+ I G   R +   +
Sbjct: 385 IGNVNVVG-NALVSMYAESGCMEEARKAFDQLYER----NLLSTSSDI-GETGRSNASWS 438

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
                Q++   +  +  T  SLLS  A+VG    G++ H  +IK     D        + 
Sbjct: 439 ----SQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKG------IS 488

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           N+L+ MY++C  +D A   FD +   + +V +WT +I + +++G A  AL+LF  M    
Sbjct: 489 NSLVSMYSRCGYLDDACRAFDEM-EDDHNVISWTSIISALAKHGHAERALSLFHDMILSG 547

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
             VKPN  T    L AC+ +  ++ G++    + ++    LIP + +  C++D+ +RSG 
Sbjct: 548 --VKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHR--LIPRMEHYACMVDLLARSGL 603

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTG---YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           +  A    + +  + + + W +L+     Y    +G+ A      +  +  AP     L 
Sbjct: 604 VQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAP--YVLLS 661

Query: 569 LLYACSHSGMVDQ-----GLKYFDSMSKEFGIS 596
            LYA  H G+ D+      L    ++SKE G+S
Sbjct: 662 NLYA--HGGLWDEVARIRSLMRHRNLSKETGLS 692



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 137/277 (49%), Gaps = 14/277 (5%)

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG+  H    +R+L  +    D L V N+L+ MY+KC  V  AR +FD +    RD+ +W
Sbjct: 61  LGRALH----RRLLGTEVLDADAL-VANSLLTMYSKCGHVRAARRVFDGMRGL-RDLVSW 114

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-FGRQIHAY 486
           T M    ++NG   +AL L  +M +    ++PNAFTL  A  AC      R  G  +  +
Sbjct: 115 TAMAFCLTRNGAEQEALVLLGEMLESG--LRPNAFTLCAAAHACFPGELFRSSGGTVLGF 172

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
            ++  +      V   LIDM++R+GD+  AR VF+ L +R VV WT ++T Y   G   K
Sbjct: 173 AIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGK 232

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F  M ++G  PDG T   ++ AC+  G    G +   S+    G+ +       +V
Sbjct: 233 AVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLG-QQLHSLVLRLGLVSDTCVSCGLV 291

Query: 607 DL---LGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           D+   L     ++ A ++ + MP     + W AL++G
Sbjct: 292 DMYTKLQMEQSMECARKVFKRMPTHNV-MSWTALISG 327



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 16/208 (7%)

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-RNVVSWTSLMTG 537
            GR +H  +L  +       VAN L+ MYS+ G +  AR VFD ++  R++VSWT++   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
              +G   +A     +M + GL P+  T     +AC    +           + + G   
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWG 180

Query: 598 RAEHYAC-IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN-----GCRIHA-NVELG 650
                 C ++D+  R   L  A ++  G+ +E T ++W  ++      GC   A  + LG
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGL-VERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANA 678
                 +LE   E DG YT+ S + A A
Sbjct: 240 ------MLEDGFEPDG-YTMSSMVSACA 260


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/673 (37%), Positives = 382/673 (56%), Gaps = 25/673 (3%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +F WN L+    ++     +  LF +M   G   D YTF  VLK        R    VH 
Sbjct: 123 IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHG 182

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF S   V N+L+A Y +C  +  AR LFDE+      D+VSWN++++    +G 
Sbjct: 183 YVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDR---DVVSWNSMISGCTMNGF 239

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
           +  GL  F +M  ++ V  D  +LVN L ACA++G  + G+        K  F       
Sbjct: 240 SRNGLEFFIQML-NLGVDVDSATLVNVLVACANVGNLTLGRALHAYG-VKAGFS----GG 293

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V+  N ++  YS+ G+   A  +F KM +  +    V+W+++IA + + G  +EA+ +F 
Sbjct: 294 VMFNNTLLDMYSKCGNLNGANEVFVKMGETTI----VSWTSIIAAHVREGLHYEAIGLFD 349

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +MQ  GL P++  + S++  CA   +L  G+E H +  K  +        +L V NAL++
Sbjct: 350 EMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMG------SNLPVSNALMN 403

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAKC S++ A ++F  +  KN  + +W  MIG YSQN   N+AL LF  M +Q   +KP
Sbjct: 404 MYAKCGSMEEANLIFSQLPVKN--IVSWNTMIGGYSQNSLPNEALQLFLDMQKQ---LKP 458

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +  T++C L ACA LAAL  GR+IH ++LR  Y   +  VA  L+DMY + G +  A+ +
Sbjct: 459 DDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL-HVACALVDMYVKCGLLVLAQQL 517

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD + +++++ WT ++ GYGMHG G +A   F++MR  G+ P+  +F  +LYAC+HSG++
Sbjct: 518 FDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLL 577

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +G K FDSM  E  I  + EHYAC+VDLL R+  L  A + IE MP++P   IW ALL+
Sbjct: 578 KEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLS 637

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
           GCRIH +VEL E  A  + ELE E    Y LL+N+YA A +W++V +I+  +   G+K  
Sbjct: 638 GCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKND 697

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
            GCSW++ +     FF GD +HPQ++ I  +L  L  ++   GY  +  +AL + DD  K
Sbjct: 698 QGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGGYSNKIKYALINADDRLK 757

Query: 760 GDLLFEHSEKLAL 772
             LL  HSEKLA+
Sbjct: 758 EVLLCAHSEKLAM 770



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 153/547 (27%), Positives = 275/547 (50%), Gaps = 39/547 (7%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           NA I +   +    NA +L  +  R     +  T+  VL+ C EL S   G  VH++I S
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISS 85

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           +G   +  +   L+ MY  C  L   R++FD +       I  WN +++ YA+ G+    
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILND---KIFLWNLLMSEYAKIGNYRES 142

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW 283
           + LF +M  ++ ++GD  +    L   A+            + E K+V   +      S+
Sbjct: 143 VGLFEKMQ-ELGIRGDSYTFTCVLKGFAA---------SAKVRECKRVHGYVLKLGFGSY 192

Query: 284 NAMVT----GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           NA+V      Y + G  E A  LF ++       +VV+W+++I+G    G     L+ F 
Sbjct: 193 NAVVNSLIAAYFKCGEVESARILFDELSDR----DVVSWNSMISGCTMNGFSRNGLEFFI 248

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           QM   G++ +  TLV++L  CA+VG L LG+  H Y +K   S        +M  N L+D
Sbjct: 249 QMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFS------GGVMFNNTLLD 302

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+KC +++ A  +F  +      + +WT +I ++ + G   +A+ LF +M  Q K ++P
Sbjct: 303 MYSKCGNLNGANEVF--VKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEM--QSKGLRP 358

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           + + ++  + ACA   +L  GR++H ++ +N     +P V+N L++MY++ G ++ A ++
Sbjct: 359 DIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLP-VSNALMNMYAKCGSMEEANLI 417

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  L  +N+VSW +++ GY  + L ++A   F  M+K+ L PD VT   +L AC+    +
Sbjct: 418 FSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAAL 476

Query: 580 DQGLKYFDSMSKEFGISARAEHYAC-IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++G +    + ++   S    H AC +VD+  +   L  A +L + +P +   I+W  ++
Sbjct: 477 EKGREIHGHILRKGYFSDL--HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMI 533

Query: 639 NGCRIHA 645
            G  +H 
Sbjct: 534 AGYGMHG 540


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 274/739 (37%), Positives = 420/739 (56%), Gaps = 33/739 (4%)

Query: 104  NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS----SRCGSSVHA 159
            N L+    R    + A ++F +M +     +  ++  +L A  E  +     R G  VHA
Sbjct: 320  NGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHA 378

Query: 160  VICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  +   D  + + NAL+ +YA+C+ +  AR +F  M      D VSWN+I++    + 
Sbjct: 379  YLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSK---DTVSWNSIISGLDHNE 435

Query: 219  DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
              E  +  F  M  +  V     S+++ LS+CASLG    G+Q  +  E  K    +   
Sbjct: 436  RFEEAVACFHTMRRNGMVPSK-FSVISTLSSCASLGWIMLGQQ--IHGEGIKCGLDL--- 489

Query: 279  DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA-QRGHGHEALDV 337
            DV   NA++T Y+     E+   +F  M +     + V+W++ I   A       +A+  
Sbjct: 490  DVSVSNALLTLYAETDCMEEYQKVFFLMPE----YDQVSWNSFIGALATSEASVLQAIKY 545

Query: 338  FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            F +M   G +PN VT +++LS  +S+  L LG++ H   +K       S  DD  + N L
Sbjct: 546  FLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKH------SVADDNAIENTL 599

Query: 398  IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
            +  Y KC+ ++   ++F  ++ + RD  +W  MI  Y  NG  + A+ L   M Q+ +  
Sbjct: 600  LAFYGKCEQMEDCEIIFSRMSER-RDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQ-- 656

Query: 458  KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            + + FTL+  L ACA +A L  G ++HA  +R   E  +  V + L+DMY++ G ID A 
Sbjct: 657  RLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEV-VVGSALVDMYAKCGKIDYAS 715

Query: 518  VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
              F+ +  RN+ SW S+++GY  HG G KA   F QM++ G  PD VTF+ +L ACSH G
Sbjct: 716  RFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVG 775

Query: 578  MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +VD+G ++F SM + + ++ R EH++C+VDLLGRA  + +  E I+ MPM P  +IW  +
Sbjct: 776  LVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTI 835

Query: 638  LNG-CRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            L   CR ++ N ELG  AA  L+ELE     +Y LLSN++A  G+W+DV   R  M++  
Sbjct: 836  LGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAE 895

Query: 696  VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
            VKK  GCSWV  K+G   F  GD+THP+ +KIY+ L  ++ +++ +GYVP+T +AL+D++
Sbjct: 896  VKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLE 955

Query: 756  DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
             E K +LL  HSEKLA+A+ +LT     PIRI KNLR+CGDCH+A  +IS I+N +IILR
Sbjct: 956  LENKEELLSYHSEKLAIAF-VLTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILR 1014

Query: 816  DSNRFHHFKEGSCTCKGYW 834
            DSNRFHHF  G C+C+ YW
Sbjct: 1015 DSNRFHHFDGGICSCQDYW 1033



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 240/479 (50%), Gaps = 38/479 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS--RCGSSVHAV 160
           W+ L+    +  +PD A  LF  ++  G  P+ Y     L+AC EL  +  + G  +H +
Sbjct: 108 WSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGL 167

Query: 161 ICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           I  S + S++ + N LM+MY+ C  ++  AR++F+E+    +    SWN+I++ Y + GD
Sbjct: 168 ISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEI---KMKTSASWNSIISVYCRRGD 224

Query: 220 AEGGLMLFARMTGDVKVQGDGVSL---VNALSACASLGTWSRGKQCG--MMEEAKKVFER 274
           A     LF+ M      Q +   L    N  + C+ +        CG  ++E+     E+
Sbjct: 225 AISAFKLFSSM------QREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEK 278

Query: 275 MK-VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
              VKD+   +A+V+G++R G  + A  +F++M       N VT + ++ G A++  G E
Sbjct: 279 SSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDR----NAVTMNGLMVGLARQHQGEE 334

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK----ETHCYTIKRVLSVDGSHPD 389
           A  +F++M+   +E N  +   LLS       L  GK    E H Y I+  L VD     
Sbjct: 335 AAKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNAL-VDVW--- 389

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            +++ NAL+++YAKC ++D AR +F  +  K  D  +W  +I     N    +A+A F  
Sbjct: 390 -ILIGNALVNLYAKCNAIDNARSIFQLMPSK--DTVSWNSIISGLDHNERFEEAVACFHT 446

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M +++ +V P+ F++   L +CA L  +  G+QIH   ++   ++ +  V+N L+ +Y+ 
Sbjct: 447 M-RRNGMV-PSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVS-VSNALLTLYAE 503

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD-KAHWAFDQMRKEGLAPDGVTFL 567
           +  ++  + VF  + + + VSW S +           +A   F +M + G  P+ VTF+
Sbjct: 504 TDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFI 562



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 213/460 (46%), Gaps = 79/460 (17%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  I  +G  S+VF CN L+ ++ R   L  A++LFDEM Q    ++VSW+ +V+ YAQ
Sbjct: 61  LHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQK---NLVSWSCLVSGYAQ 117

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG---------------------- 254
           +G  +   MLF R      +  +  ++ +AL AC  LG                      
Sbjct: 118 NGMPDEACMLF-RGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASD 176

Query: 255 ------TWSRGKQCGM-MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                   S    C   +++A++VFE +K+K   SWN++++ Y R G    AF LF  M+
Sbjct: 177 MVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQ 236

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS-GCASVGAL 366
           +E  +LN                                 PN  T  SL++  C+ V   
Sbjct: 237 REATELNC-------------------------------RPNEYTFCSLVTVACSLVDCG 265

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
           L   E     I++      S   DL V +AL+  +A+   +D A+++F+ +  +N  V  
Sbjct: 266 LTLLEQMLARIEK-----SSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNA-VTM 319

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL----RFGRQ 482
             +M+G   Q+ G  +A  +F +M     LV+ NA + +  L A    + L    R G++
Sbjct: 320 NGLMVGLARQHQG-EEAAKIFKEM---KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQE 375

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +HAY++RN    +   + N L+++Y++   ID AR +F  +  ++ VSW S+++G   + 
Sbjct: 376 VHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNE 435

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
             ++A   F  MR+ G+ P   + +  L +C+  G +  G
Sbjct: 436 RFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLG 475



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 215/467 (46%), Gaps = 30/467 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y   NA   A S+ Q + PS  +V W N++I         + A   F  M R G  
Sbjct: 396 LVNLYAKCNAIDNARSIFQ-LMPSKDTVSW-NSIISGLDHNERFEEAVACFHTMRRNGMV 453

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P +++    L +C  L     G  +H      G D +V V NAL+ +YA  D +   +++
Sbjct: 454 PSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKV 513

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQS-GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           F  M +    D VSWN+ + A A S       +  F  M      + + V+ +N LSA +
Sbjct: 514 FFLMPEY---DQVSWNSFIGALATSEASVLQAIKYFLEMM-QAGWKPNRVTFINILSAVS 569

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           SL     G+Q   +     + +     D    N ++  Y +    ED   +F +M +   
Sbjct: 570 SLSLLELGRQIHAL-----ILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSE--- 621

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           + + V+W+A+I+GY   G  H+A+ +   M   G   +  TL ++LS CASV  L  G E
Sbjct: 622 RRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGME 681

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   I+  L        +++V +AL+DMYAKC  +D A   F+ +  +N  + +W  MI
Sbjct: 682 VHACAIRACLEA------EVVVGSALVDMYAKCGKIDYASRFFELMPVRN--IYSWNSMI 733

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+++G    AL LF QM Q  +L  P+  T    L AC+ +  +  G + H   +   
Sbjct: 734 SGYARHGHGGKALKLFTQMKQHGQL--PDHVTFVGVLSACSHVGLVDEGFE-HFKSMGEV 790

Query: 492 YEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLM 535
           YE L P + +  C++D+  R+GD+         +    N + W +++
Sbjct: 791 YE-LAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTIL 836



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 191/386 (49%), Gaps = 34/386 (8%)

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           ++++     DV   N +V  + R G+   A  LF +M Q+N+    V+WS +++GYAQ G
Sbjct: 64  QIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNL----VSWSCLVSGYAQNG 119

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA--LLLGKETHCYTIKRVLSVDGSH 387
              EA  +FR +   GL PN   + S L  C  +G   L LG E H    K        +
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISK------SPY 173

Query: 388 PDDLMVINALIDMYAKCK-SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
             D+++ N L+ MY+ C  S+D AR +F+ I  K +  A+W  +I  Y + G A  A  L
Sbjct: 174 ASDMVLSNVLMSMYSHCSASIDDARRVFEEI--KMKTSASWNSIISVYCRRGDAISAFKL 231

Query: 447 FPQMFQQDKLV--KPNAF------TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
           F  M ++   +  +PN +      T++C+L+ C     L    Q+ A + ++ +   + +
Sbjct: 232 FSSMQREATELNCRPNEYTFCSLVTVACSLVDC----GLTLLEQMLARIEKSSFVKDL-Y 286

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V + L+  ++R G ID+A+++F+ +  RN V+   LM G      G++A   F +M K+ 
Sbjct: 287 VGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDL 345

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI----VDLLGRANR 614
           +  +  ++ VLL A +    + +G +    +      +A  + +  I    V+L  + N 
Sbjct: 346 VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNA 405

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNG 640
           +D A  + + MP + T + W ++++G
Sbjct: 406 IDNARSIFQLMPSKDT-VSWNSIISG 430



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 15/265 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   +   +   A  L   MM++G   D++T   VL AC  + +   G  VHA   
Sbjct: 628 WNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAI 687

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  ++ V V +AL+ MYA+C  + YA + F+ M    + +I SWN++++ YA+ G    
Sbjct: 688 RACLEAEVVVGSALVDMYAKCGKIDYASRFFELM---PVRNIYSWNSMISGYARHGHGGK 744

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDVV 281
            L LF +M    ++  D V+ V  LSAC+ +G    G +    M E  ++  R++     
Sbjct: 745 ALKLFTQMKQHGQLP-DHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIE----- 798

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            ++ MV    R G  +      K M    +  N + W  ++    +    +  L      
Sbjct: 799 HFSCMVDLLGRAGDVKKLEEFIKTMP---MNPNALIWRTILGACCRANSRNTELGRRAAK 855

Query: 342 QFCGLEP-NVVTLVSLLSGCASVGA 365
               LEP N V  V LLS   + G 
Sbjct: 856 MLIELEPLNAVNYV-LLSNMHAAGG 879


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/700 (36%), Positives = 390/700 (55%), Gaps = 50/700 (7%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG--- 223
           D N+F  NAL++  A    L    +LF  M Q    D VS+N ++A ++ +G        
Sbjct: 73  DPNLFTRNALLSALAHARLLPDMDRLFASMPQR---DAVSYNALIAGFSGAGAPARAAGA 129

Query: 224 ---LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------------------ 262
              L+    +    +V+   +++   + A ++LG  + G+Q                   
Sbjct: 130 YRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSP 189

Query: 263 --------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                   G++ +AK+VF+ M VK+VV +N M+TG  R    E+A  +F+ M    V  +
Sbjct: 190 LVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAM----VDRD 245

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            +TW+ ++ G  Q G   EALDVFR+M+  G+  +  T  S+L+ C ++ A   GK+ H 
Sbjct: 246 SITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 305

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           YTI+ +   DG    ++ V +AL+DMY+KC+S+ +A  +F  +  KN  + +WT MI  Y
Sbjct: 306 YTIRTLY--DG----NIFVGSALVDMYSKCRSIRLAEAVFRRMTCKN--IISWTAMIVGY 357

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
            QNG   +A+ +F +M  Q   +KPN FTL   + +CA LA+L  G Q H   L +    
Sbjct: 358 GQNGCGEEAVRVFSEM--QTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRP 415

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            I  V++ L+ +Y + G I+ A  +FD +   + VS+T+L++GY   G   +    F++M
Sbjct: 416 YIT-VSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKM 474

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
             +G+ P+GVTF+ +L ACS SG+V++G  YF SM ++ GI    +HY C++DL  R+ R
Sbjct: 475 LLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGR 534

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L EA E I  MP  P  I W  LL+ CR+  ++E+G+ AA  LL+ + +   SY LL ++
Sbjct: 535 LKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSM 594

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           +A+ G W +VA +R  M+   VKK PGCSW++ K     F   D++HP S  IYE L  L
Sbjct: 595 HASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWL 654

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
             ++   GY P  S  LHDV D EK  +L  HSEKLA+A+G++      PIR+ KNLR+C
Sbjct: 655 NSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVC 714

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCH+A  FIS I   +I++RD+ RFH F  G C+C  +W
Sbjct: 715 VDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 141/593 (23%), Positives = 236/593 (39%), Gaps = 143/593 (24%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLP 116
           ++++ L H PP++++   ++  A S  L L +R+    P P ++F  NAL+      RL 
Sbjct: 34  LVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDP-NLFTRNALLSALAHARLL 92

Query: 117 DNAFRLFLQMMRRGW--------------------------------------HPDEYTF 138
            +  RLF  M +R                                         P   T 
Sbjct: 93  PDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITM 152

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
             ++ A   L     G  VH  I   GF +  F  + L+ MYA+   +  A+++FDEM  
Sbjct: 153 SGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVV 212

Query: 199 PGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARM 230
             +                             D ++W T+V    Q+G     L +F RM
Sbjct: 213 KNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRM 272

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGM 264
             +  V  D  +  + L+AC +L     GKQ                          C  
Sbjct: 273 RAE-GVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRS 331

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +  A+ VF RM  K+++SW AM+ GY + G  E+A  +F +M+ + +K            
Sbjct: 332 IRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIK------------ 379

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
                                  PN  TL S++S CA++ +L  G + HC  +     V 
Sbjct: 380 -----------------------PNDFTLGSVISSCANLASLEEGAQFHCMAL-----VS 411

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
           G  P  + V +AL+ +Y KC S++ A  +FD +     D  ++T ++  Y+Q G A + +
Sbjct: 412 GLRP-YITVSSALVTLYGKCGSIEDAHRLFDEM--PFHDQVSYTALVSGYAQFGKAKETI 468

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF +M    K VKPN  T    L AC+R   +  G      + ++   +L+     C+I
Sbjct: 469 DLFEKMLL--KGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMI 526

Query: 505 DMYSRSGDIDTARVVFDNLKQ-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           D+YSRSG +  A      + +  + + W +L++   + G  +   WA + + K
Sbjct: 527 DLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLK 579



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 205/477 (42%), Gaps = 76/477 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++    +  L   A  +F +M   G   D+YTF  +L ACG L +S  G  +HA   
Sbjct: 249 WTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTI 308

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
            + +D N+FV +AL+ MY++C ++  A  +F  M     C +I+SW  ++  Y Q+G  E
Sbjct: 309 RTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRM----TCKNIISWTAMIVGYGQNGCGE 364

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             + +F+ M  D  ++ +  +L + +S+CA+L +   G Q   M     +   + V    
Sbjct: 365 EAVRVFSEMQTD-GIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVS--- 420

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             +A+VT Y + GS EDA  LF +M       + V+++A+++GYAQ G   E +D+F +M
Sbjct: 421 --SALVTLYGKCGSIEDAHRLFDEMPFH----DQVSYTALVSGYAQFGKAKETIDLFEKM 474

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G++PN VT + +LS C+  G +    E  C                          Y
Sbjct: 475 LLKGVKPNGVTFIGVLSACSRSGLV----EKGCS-------------------------Y 505

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
                 D   V+ D           +T MI  YS++G   +A     QM +      P+A
Sbjct: 506 FHSMQQDHGIVLLD---------DHYTCMIDLYSRSGRLKEAEEFIRQMPRC-----PDA 551

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
              +  L AC     +  G+     +L+   +    +V  C   M++  G+     ++  
Sbjct: 552 IGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLC--SMHASKGEWSEVALLRR 609

Query: 522 NLKQRNV-----VSWTSLMTGYGMHGLGDKAH-----------WAFDQMRKEGLAPD 562
            ++ R V      SW        +    D++H           W   +M +EG  PD
Sbjct: 610 GMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPD 666


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/709 (36%), Positives = 396/709 (55%), Gaps = 38/709 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+A     S R G  +H  I   GF S+  + N L+ MY +C  L  A ++F  M    
Sbjct: 10  LLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDR- 68

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  ++  + + GDA G L L   M    +   +  +L  +L AC  +G  +   
Sbjct: 69  --NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTA--- 123

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
             G+      V    +  DVV+ +++V  YS+ G   DA  +F       +   + TW+A
Sbjct: 124 -AGVGIHGLCVRAGYQEHDVVA-SSLVLVYSKGGRIGDARRVFDGA---GLGSGIATWNA 178

Query: 321 VIAGYAQRGHGHEALDVFRQMQF--CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +++GYA  GHG +AL VFR+M+      +P+  T  SLL  C+ +GA   G + H     
Sbjct: 179 MVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHA---- 234

Query: 379 RVLSVDG-SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
             ++  G S   + ++  AL+DMY KC+ + VA  +F+ +  KN  V  WT ++  ++Q 
Sbjct: 235 -AMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKN--VIQWTAVVVGHAQE 291

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   +AL LF + ++     +P++  LS  +   A  A +  GRQ+H Y +++     + 
Sbjct: 292 GQVTEALELFRRFWRSG--ARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVS 349

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
              N ++DMY + G  D A  +F  ++  NVVSWT+++ G G HGLG +A   F++MR  
Sbjct: 350 -AGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAG 408

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ PD VT+L LL ACSH+G+VD+  +YF  + ++  +  +AEHYAC+VDLLGRA  L E
Sbjct: 409 GVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELRE 468

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A +LI  MPMEPT  +W  LL+ CR+H +V +G  A + LL ++ +   +Y  LSN+ A 
Sbjct: 469 ARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAE 528

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKEGTATFFVG----DRTHPQSQKIYEILA 732
           AG W++  ++R  M+  G+KK+ GCSWV+ GKE    FF G    + THPQ+  I  +L 
Sbjct: 529 AGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKE--VHFFYGGGGEEETHPQAGDIRRVLR 586

Query: 733 GLVQRIKA-MGY-VPQTSFALHDVDDEEKGDLLFEHSEKLA-----LAYGILTTAPGTPI 785
            +  R++  +GY      FALHDVD+E + + L  HSE+LA     L  G+     G PI
Sbjct: 587 DMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGHGEPI 646

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+ KNLR+CGDCH     +S ++   +++RD+NRFH F+ GSC+CK YW
Sbjct: 647 RVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 695



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 208/447 (46%), Gaps = 24/447 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSV 157
           +V  W AL+   +R        RL  +M       P+EYT    LKAC  +  +  G  +
Sbjct: 69  NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGI 128

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQ 216
           H +   +G+  +  V ++L+ +Y++   +  AR++FD     G+   I +WN +V+ YA 
Sbjct: 129 HGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFD---GAGLGSGIATWNAMVSGYAH 185

Query: 217 SGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           +G     L++F  M   + + Q D  +  + L AC+ LG    G Q   +  A       
Sbjct: 186 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQ---VHAAMTASGFS 242

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              + +   A+V  Y +      A  +F+++ ++NV    + W+AV+ G+AQ G   EAL
Sbjct: 243 TASNAILAGALVDMYVKCRRLPVAMQVFERLERKNV----IQWTAVVVGHAQEGQVTEAL 298

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           ++FR+    G  P+   L S++   A    +  G++ HCY IK     D S        N
Sbjct: 299 ELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVS------AGN 352

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +++DMY KC   D A  MF  +   N  V +WT M+    ++G   +A+ALF +M  +  
Sbjct: 353 SIVDMYLKCGLPDEAERMFREMRAPN--VVSWTTMVNGLGKHGLGREAVALFEEM--RAG 408

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            V+P+  T    L AC+    +   R+  + + R++          C++D+  R+G++  
Sbjct: 409 GVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELRE 468

Query: 516 ARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           AR +   +     V  W +L++   +H
Sbjct: 469 ARDLIRTMPMEPTVGVWQTLLSACRVH 495


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/741 (35%), Positives = 404/741 (54%), Gaps = 81/741 (10%)

Query: 155 SSVHAVICSS-GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           ++VHA+I  +    S  ++ N L+  YA    L +AR++FD M  PG  ++V+ N++++A
Sbjct: 30  AAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAM--PGR-NLVTGNSLLSA 86

Query: 214 YAQSGDAEGGLMLF--------------------------------ARMTGDVKVQGDGV 241
            A++G       LF                                A +  +  V+   +
Sbjct: 87  LARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRI 146

Query: 242 SLVNALSACASLGTWSRGKQC--------------------------GMMEEAKKVFERM 275
           ++   +   ++LG  + G+Q                           G + +A++VF+ M
Sbjct: 147 TMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           + K+VV  N M+TG  R     +A ALF+ + + +     +TW+ ++ G  Q G   EAL
Sbjct: 207 EGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDS----ITWTTMVTGLTQNGLESEAL 262

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           DVFR+M+  G+  +  T  S+L+ C ++ AL  GK+ H Y  +        + D++ V +
Sbjct: 263 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTC------YEDNVFVGS 316

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           AL+DMY+KC+SV +A  +F  +  KN  + +WT MI  Y QNG   +A+ +F +M Q+D 
Sbjct: 317 ALVDMYSKCRSVRLAEAVFRRMMWKN--IISWTAMIVGYGQNGCGEEAVRVFSEM-QRDG 373

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV--ANCLIDMYSRSGDI 513
            +KP+ FTL   + +CA LA+L  G Q H   L +    L P+V  +N L+ +Y + G I
Sbjct: 374 -IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG---LRPYVTVSNALVTLYGKCGSI 429

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           + A  +FD +   + VSWT+L+ GY   G   +    F++M  +G+ PDGVTF+ +L AC
Sbjct: 430 EDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSAC 489

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           S SG+VD+G  YF SM ++  I    +HY C++DL  R+  L +A E I+ MP  P    
Sbjct: 490 SRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFG 549

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W  LL+ CR+  ++E+G+ AA  LL+L+ +   SY LL +++A+ G W DVA++R  M+ 
Sbjct: 550 WATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRD 609

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             VKK PGCSW++ K     F   D++HP S+ IYE L  L  ++   GY P  S  LHD
Sbjct: 610 RQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHD 669

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           V D EK  +L  HSEKLA+A+G++   P  PIRI KNLR+C DCH+A  FIS I   +I+
Sbjct: 670 VADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDIL 729

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD+ RFH F  G C+C  +W
Sbjct: 730 VRDAVRFHKFSNGICSCGDFW 750



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 143/601 (23%), Positives = 239/601 (39%), Gaps = 138/601 (22%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI--SPSPFSVFWWNALIRRAVRLRLPD 117
           +I++ L H  P++L+   ++  A S  L   +R+  +    ++   N+L+    R  L  
Sbjct: 35  LILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVR 94

Query: 118 NAFRLFLQMMRR---------------------------------GWHPDEYTFPFVLKA 144
           +  RLF  + +R                                 G  P   T   V+  
Sbjct: 95  DMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMV 154

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-- 202
              L     G  VH  I   GF +  F  + L+ MYA+   +  AR++FDEM    +   
Sbjct: 155 ASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMC 214

Query: 203 --------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
                                     D ++W T+V    Q+G     L +F RM  +  V
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE-GV 273

Query: 237 QGDGVSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKK 270
             D  +  + L+AC +L     GKQ                          C  +  A+ 
Sbjct: 274 GIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEA 333

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           VF RM  K+++SW AM+ GY + G  E+A  +F +M+++                     
Sbjct: 334 VFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRD--------------------- 372

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
                         G++P+  TL S++S CA++ +L  G + HC  +     V G  P  
Sbjct: 373 --------------GIKPDDFTLGSVISSCANLASLEEGAQFHCLAL-----VSGLRP-Y 412

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           + V NAL+ +Y KC S++ A  +FD ++    D  +WT ++  Y+Q G A + + LF +M
Sbjct: 413 VTVSNALVTLYGKCGSIEDAHRLFDEMS--FHDQVSWTALVMGYAQFGKAKETIDLFEKM 470

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
               K VKP+  T    L AC+R   +  GR     + ++   + +     C+ID+YSRS
Sbjct: 471 LS--KGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRS 528

Query: 511 GDIDTARVVFDNLKQ-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           G +  A      + +  +   W +L++   + G  +   WA + + K  L P      VL
Sbjct: 529 GWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLK--LDPQNPASYVL 586

Query: 570 L 570
           L
Sbjct: 587 L 587


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/697 (36%), Positives = 387/697 (55%), Gaps = 27/697 (3%)

Query: 141 VLKACGELPSSRCGSSVHA--VICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           +LK   +  + + G ++HA   I +  + DS V   N+L+ +Y +CD +S AR+LFD M 
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +    ++VSW+ ++A Y Q+G+      LF +M     +  +   +  A+S+C S   + 
Sbjct: 85  RR---NVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDS-QMYV 140

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GKQC        +     VK     NA++  YS+      A  +   +   ++      
Sbjct: 141 EGKQCHGYALKSGLEFHQYVK-----NALIQLYSKCSDVGAAIQILYTVPGNDI----FC 191

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           ++ V+ G  Q  H  EA+DV + +   G+E N  T V++   CAS+  + LGK+ H   +
Sbjct: 192 YNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQML 251

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K  +  D      + + +++IDMY KC +V   R  FD +  ++R+V +WT +I +Y QN
Sbjct: 252 KSDIDCD------VYIGSSIIDMYGKCGNVLSGRTFFDRL--QSRNVVSWTSIIAAYFQN 303

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
               +AL LF +M  +   + PN +T++    + A L+AL  G Q+HA   ++  +  + 
Sbjct: 304 EFFEEALNLFSKM--EIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNV- 360

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            V N LI MY +SGDI  A+ VF N+   N+++W +++TG+  HGLG +A   F  M   
Sbjct: 361 MVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMAT 420

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G  P+ VTF+ ++ AC+H  +VD+G  YF+ + K+F I    EHY CIV LL R+ RLDE
Sbjct: 421 GERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDE 480

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A   +    +    + W  LLN C +H + + G   A  LL+LE    G+Y LLSN++A 
Sbjct: 481 AENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHAR 540

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
             RW  V  IR LM+   VKK PG SW++ +     F   D  HP++  IYE +  L+ +
Sbjct: 541 VRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSK 600

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           I+ +GYVP     LHD++DE+K D L  HSEKLA+AYG++ T  G PI + KNLR+C DC
Sbjct: 601 IRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDC 660

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+AI  IS + N  I++RD+NRFHHF+ G C+C  YW
Sbjct: 661 HTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 157/357 (43%), Gaps = 28/357 (7%)

Query: 7   VFPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCK--SLTQVYLIHQQIIVQN 64
           VF L K    +  +++F N  + +   + C     +  +QC   +L      HQ +    
Sbjct: 107 VFELFKKM--VVKDNIFPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYV---- 160

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
                 + LI  Y   +    A+ +L  +  +   +F +N ++   ++      A  +  
Sbjct: 161 -----KNALIQLYSKCSDVGAAIQILYTVPGN--DIFCYNLVVNGLLQHTHMAEAVDVLK 213

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
            ++  G   +  T+  + + C  L     G  VHA +  S  D +V++ ++++ MY +C 
Sbjct: 214 LIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCG 273

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            +   R  FD +      ++VSW +I+AAY Q+   E  L LF++M  D  +  +  ++ 
Sbjct: 274 NVLSGRTFFDRLQSR---NVVSWTSIIAAYFQNEFFEEALNLFSKMEIDC-IPPNEYTMA 329

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
              ++ A L     G Q     E   +       +V+  NA++  Y + G    A ++F 
Sbjct: 330 VLFNSAAGLSALCLGDQLHARAEKSGL-----KGNVMVGNALIIMYFKSGDILAAQSVFS 384

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
            M       N++TW+A+I G++  G G EAL +F+ M   G  PN VT + ++  CA
Sbjct: 385 NM----TCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACA 437


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 385/678 (56%), Gaps = 24/678 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +     D + ++ N ++       + +Y++ +F ++ +P   +I  WNT++     
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEP---NIFLWNTMIRGLVS 91

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
               +  + L+  M G      +  ++   L ACA       G +   +   K  ++   
Sbjct: 92  KDCFDDAIHLYGSMRGG-GFLPNNFTIPFVLKACARKLDVRLGLKIHSLL-VKAGYDH-- 147

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV    ++++ Y +  +F+DA  +F  +  +NV    V+W+A+I GY   GH  EA+ 
Sbjct: 148 --DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV----VSWTAIITGYISSGHFREAIG 201

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F+++   GL+P+  +LV +L+ CA +G    G+      I R +S D     ++ V  +
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGE-----WIDRYIS-DSGMGRNVFVATS 255

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY KC +++ A ++F A+  K  D+ +W+ MI  Y+ NG    AL LF QM  Q + 
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEK--DIVSWSTMIQGYAFNGLPQQALDLFFQM--QSEN 311

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP+ +T+   L ACA L AL  G    + + RN++ +  P +   LIDMYS+ G +  A
Sbjct: 312 LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF-LSNPVLGTALIDMYSKCGSVTQA 370

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +F  +K+++ V W ++M G  M+G        F  + K G+ PD  TF+ LL  C+H 
Sbjct: 371 WEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHG 430

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G V++G ++F++M + F ++   EHY C+VDLLGRA  L+EA +LI  MPM+P  ++W A
Sbjct: 431 GFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGA 490

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL GC++H +  L E    +L+ELE    G+Y  LSNIY+   RW++  +IRS MK   +
Sbjct: 491 LLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQI 550

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           +K   CSW++       F VGD++H  S+KIY  L  L + +KA+G+VP T F L D+++
Sbjct: 551 QKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEE 610

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EEK   L  HSEKLA+A+G++ + P   IR+ KNLR+CGDCH AI  IS I   EII+RD
Sbjct: 611 EEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRD 670

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFH F +GSC+C+ YW
Sbjct: 671 TNRFHTFIDGSCSCRDYW 688



 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 221/472 (46%), Gaps = 80/472 (16%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN +IR  V     D+A  L+  M   G+ P+ +T PFVLKAC      R G  +H
Sbjct: 78  NIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIH 137

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++  +G+D +VFV  +L+++Y +CD    A ++FD++      ++VSW  I+  Y  SG
Sbjct: 138 SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK---NVVSWTAIITGYISSG 194

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
                +  F ++  ++ ++ D  SLV  L+ACA LG  + G+                  
Sbjct: 195 HFREAIGAFKKLL-EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA 253

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG +E A  +F  M  KD+VSW+ M+ GY+  G  + A  LF +M+ EN+K
Sbjct: 254 TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLK 313

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                              P+  T+V +LS CA++GAL LG   
Sbjct: 314 -----------------------------------PDCYTMVGVLSACATLGALDLGIWA 338

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                +       S+P   ++  ALIDMY+KC SV  A  +F A+  K+R V  W  M+ 
Sbjct: 339 SSLMDRNEFL---SNP---VLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVV--WNAMMV 390

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             S NG A    +LF  + +    ++P+  T    L  C     +  GRQ    + R   
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHG--IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKR--V 446

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMH 541
             L P + +  C++D+  R+G ++ A  + +N+  + N V W +L+ G  +H
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 385/678 (56%), Gaps = 24/678 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +     D + ++ N ++       + +Y++ +F ++ +P   +I  WNT++     
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEP---NIFLWNTMIRGLVS 91

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
               +  + L+  M G      +  ++   L ACA       G +   +   K  ++   
Sbjct: 92  KDCFDDAIHLYGSMRGG-GFLPNNFTIPFVLKACARKLDVRLGLKIHSLL-VKAGYDH-- 147

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV    ++++ Y +  +F+DA  +F  +  +NV    V+W+A+I GY   GH  EA+ 
Sbjct: 148 --DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV----VSWTAIITGYISSGHFREAIG 201

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F+++   GL+P+  +LV +L+ CA +G    G+      I R +S D     ++ V  +
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGE-----WIDRYIS-DSGMGRNVFVATS 255

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY KC +++ A ++F A+  K  D+ +W+ MI  Y+ NG    AL LF QM  Q + 
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEK--DIVSWSTMIQGYAFNGLPQQALDLFFQM--QSEN 311

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP+ +T+   L ACA L AL  G    + + RN++ +  P +   LIDMYS+ G +  A
Sbjct: 312 LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF-LSNPVLGTALIDMYSKCGSVTQA 370

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +F  +K+++ V W ++M G  M+G        F  + K G+ PD  TF+ LL  C+H 
Sbjct: 371 WEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHG 430

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G V++G ++F++M + F ++   EHY C+VDLLGRA  L+EA +LI  MPM+P  ++W A
Sbjct: 431 GFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGA 490

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL GC++H +  L E    +L+ELE    G+Y  LSNIY+   RW++  +IRS MK   +
Sbjct: 491 LLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQI 550

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           +K   CSW++       F VGD++H  S+KIY  L  L + +KA+G+VP T F L D+++
Sbjct: 551 QKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEE 610

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EEK   L  HSEKLA+A+G++ + P   IR+ KNLR+CGDCH AI  IS I   EII+RD
Sbjct: 611 EEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRD 670

Query: 817 SNRFHHFKEGSCTCKGYW 834
           +NRFH F +GSC+C+ YW
Sbjct: 671 TNRFHTFIDGSCSCRDYW 688



 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 221/472 (46%), Gaps = 80/472 (16%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN +IR  V     D+A  L+  M   G+ P+ +T PFVLKAC      R G  +H
Sbjct: 78  NIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIH 137

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++  +G+D +VFV  +L+++Y +CD    A ++FD++      ++VSW  I+  Y  SG
Sbjct: 138 SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK---NVVSWTAIITGYISSG 194

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
                +  F ++  ++ ++ D  SLV  L+ACA LG  + G+                  
Sbjct: 195 HFREAIGAFKKLL-EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA 253

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG +E A  +F  M  KD+VSW+ M+ GY+  G  + A  LF +M+ EN+K
Sbjct: 254 TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLK 313

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                              P+  T+V +LS CA++GAL LG   
Sbjct: 314 -----------------------------------PDCYTMVGVLSACATLGALDLGIWA 338

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                +       S+P   ++  ALIDMY+KC SV  A  +F A+  K+R V  W  M+ 
Sbjct: 339 SSLMDRNEFL---SNP---VLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVV--WNAMMV 390

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             S NG A    +LF  + +    ++P+  T    L  C     +  GRQ    + R   
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHG--IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKR--V 446

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMH 541
             L P + +  C++D+  R+G ++ A  + +N+  + N V W +L+ G  +H
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/741 (34%), Positives = 406/741 (54%), Gaps = 40/741 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I    +  L + +FR F  M       +  T   +L  CG +   + G  VH +  
Sbjct: 229 WNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAV 288

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +SN+ +CN L+++Y+       A  +F  M +    D++SWN+++A Y Q G    
Sbjct: 289 KYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPER---DLISWNSMLACYVQDGRCLC 345

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------QCGMMEEAKKVFERM 275
            L +FA M   +K + + V+  +AL+AC     ++ GK         G+ +E        
Sbjct: 346 ALKVFAEMLW-MKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDE-------- 396

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
               ++  N ++T Y +     +A  +F++M     KL+ VTW+A+I G+A     +EA+
Sbjct: 397 ----LIIGNTLITFYGKCHKMAEAKKVFQRMP----KLDKVTWNALIGGFANNAELNEAV 448

Query: 336 DVFRQMQFCGLEP-NVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMV 393
             F+ M+       + +T+V++L  C +   L+  G   H +T+     +D        V
Sbjct: 449 AAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQH------V 502

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            ++LI MYAKC  +  +  +FD +  K   V  W  +I + ++ G   +AL L  +M  +
Sbjct: 503 QSSLITMYAKCGDLHSSSYIFDQLVFKTSSV--WNAIIAANARYGFGEEALKLVVRM--R 558

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              ++ + F  S AL   A LA L  G+Q+H   ++  +E L  F+ N  +DMY + G++
Sbjct: 559 SAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFE-LDHFIINAAMDMYGKCGEL 617

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D A  +      R+ +SW +L++    HG   KA   F  M K G+ P+ V+F+ LL AC
Sbjct: 618 DDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSAC 677

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH G+VD+GL Y+ SM+  +GI    EH  C++DLLGR+ RL EA   I  MP+ P  ++
Sbjct: 678 SHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLV 737

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W +LL  CRI+ N++LG  AA  LLEL+   D +Y L SN++A  GRW+DV  +R  M  
Sbjct: 738 WRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGA 797

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             ++K+P  SWV+ K   + F +GD+THPQ ++I   L GL++ +   GYVP TS++L D
Sbjct: 798 HKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTSYSLQD 857

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
            D+E+K   ++ HSE++ALA+G++    G+ +RI KNLR+CGDCHS   F+S ++  +I+
Sbjct: 858 TDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIV 917

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRD  RFHHF  G+C+C  YW
Sbjct: 918 LRDPYRFHHFTNGNCSCSDYW 938



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 143/655 (21%), Positives = 268/655 (40%), Gaps = 116/655 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP-SSRCGSSVHAVI 161
           WN ++   VR+     A   F  +   G  P  +    ++ AC +    ++ G   H   
Sbjct: 26  WNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIASLVTACNKSSIMAKEGFQFHGFA 85

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
              G   +VFV  + +  YA    +S A+++F+EM      ++VSW +++ +Y+ +G  +
Sbjct: 86  IKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDR---NVVSWTSLMVSYSDNGSKK 142

Query: 222 GGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQ------------------- 261
             +  + RM  + +    + ++LV  +S+C  L     G Q                   
Sbjct: 143 EVINTYKRMRHEGICCNENNIALV--ISSCGFLMDIILGHQLLGHALKFGLETKVSAANS 200

Query: 262 -------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                  CG + EA  +F  M  +D +SWN++++  ++    E++F  F  MR  + ++N
Sbjct: 201 LIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEIN 260

Query: 315 VVT---------------WSAVIAG--------------------YAQRGHGHEALDVFR 339
             T               W   + G                    Y+  G   +A  +FR
Sbjct: 261 YTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFR 320

Query: 340 QMQ--------------------FCGL-----------EPNVVTLVSLLSGCASVGALLL 368
           +M                      C L           E N VT  S L+ C        
Sbjct: 321 RMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTN 380

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK  H + +  VL +     D+L++ N LI  Y KC  +  A+ +F  + PK  D  TW 
Sbjct: 381 GKILHGFVV--VLGLQ----DELIIGNTLITFYGKCHKMAEAKKVFQRM-PK-LDKVTWN 432

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL-RFGRQIHAYV 487
            +IG ++ N   N+A+A F ++ ++      +  T+   L +C     L ++G  IHA+ 
Sbjct: 433 ALIGGFANNAELNEAVAAF-KLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHT 491

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +   ++ L   V + LI MY++ GD+ ++  +FD L  +    W +++     +G G++A
Sbjct: 492 VVTGFD-LDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEA 550

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA--CI 605
                +MR  G+  D   F   L   +   M+++G +   S  K   +    +H+     
Sbjct: 551 LKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIK---LGFELDHFIINAA 607

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           +D+ G+   LD+A+ ++   P + + + W  L++    H      +   + +L+L
Sbjct: 608 MDMYGKCGELDDALRILP-QPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKL 661



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/516 (23%), Positives = 229/516 (44%), Gaps = 42/516 (8%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY++   ++YA+ +FD M +    +  SWN +++ Y + G     ++ F  + G + ++ 
Sbjct: 1   MYSKFGRINYAQLVFDRMSER---NEASWNHMMSGYVRVGSYVEAVLFFRDICG-IGIKP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTGYSRI 293
            G  + + ++AC          +  +M +    F    +K     DV    + V  Y+  
Sbjct: 57  SGFMIASLVTAC---------NKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASY 107

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   +A  +F +M   NV    V+W++++  Y+  G   E ++ +++M+  G+  N   +
Sbjct: 108 GIVSNAQKMFNEMPDRNV----VSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNI 163

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
             ++S C  +  ++LG +   + +K  L    S        N+LI M+  C  ++ A  +
Sbjct: 164 ALVISSCGFLMDIILGHQLLGHALKFGLETKVS------AANSLIFMFGGCGDINEACSI 217

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP--NAFTLSCALMAC 471
           F+ +    RD  +W  +I + +QN    ++   F  M    +LV    N  TLS  L  C
Sbjct: 218 FNEM--NERDTISWNSIISANAQNTLHEESFRYFHWM----RLVHEEINYTTLSILLSIC 271

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
             +  L++G+ +H   ++   E  I  + N L+ +YS +G    A ++F  + +R+++SW
Sbjct: 272 GSVDYLKWGKGVHGLAVKYGLESNIC-LCNTLLSVYSDAGRSKDAELIFRRMPERDLISW 330

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            S++  Y   G    A   F +M       + VTF   L AC        G K       
Sbjct: 331 NSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNG-KILHGFVV 389

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
             G+         ++   G+ +++ EA ++ + MP +   + W AL+ G     N EL E
Sbjct: 390 VLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMP-KLDKVTWNALIGG--FANNAELNE 446

Query: 652 -LAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
            +AA +L+   S     Y  + NI  +    +D+ +
Sbjct: 447 AVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIK 482


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/721 (35%), Positives = 397/721 (55%), Gaps = 30/721 (4%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + A  LF ++   G   +++    +LK    + ++     VH+     G D N FV + L
Sbjct: 144 EAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGL 203

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           +  Y+ C  +S A  +F+ + +    D V W  +V+ Y+++   E    +F++M    +V
Sbjct: 204 IDAYSLCSLVSDAEHVFNGIVRK---DAVVWTAMVSCYSENDCPENAFRVFSKM----RV 256

Query: 237 QG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            G   +  +L + L A   L +   GK  G+   A K     +        A++  Y++ 
Sbjct: 257 SGCKPNPFALTSVLKAAVCLPSVVLGK--GIHGCAIKTLNDTEPH---VGGALLDMYAKC 311

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  +DA   F+ +  ++V    +  S +I+ YAQ     +A ++F ++    + PN  +L
Sbjct: 312 GDIKDARLAFEMIPYDDV----ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 367

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L  C ++  L  GK+ H + IK        H  DL V NAL+D YAKC  +D +  +
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKI------GHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F ++   N    +W  ++  +SQ+G   +AL++F +M  Q   +     T S  L ACA 
Sbjct: 422 FSSLRDANE--VSWNTIVVGFSQSGLGEEALSVFCEM--QAAQMPCTQVTYSSVLRACAS 477

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
            A++R   QIH  + ++ +      + N LID Y++ G I  A  VF +L +R+++SW +
Sbjct: 478 TASIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNA 536

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++GY +HG    A   FD+M K  +  + +TF+ LL  CS +G+V+ GL  FDSM  + 
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDH 596

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    EHY CIV LLGRA RL++A++ I  +P  P+ ++W ALL+ C IH NV LG  +
Sbjct: 597 GIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS 656

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A ++LE+E + + +Y LLSN+YA AG    VA +R  M++ GV+K PG SWV+ K     
Sbjct: 657 AEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHA 716

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F VG   HP  + I  +L  L  +    GY+P  +  LHDVD E+K  +L+ HSE+LALA
Sbjct: 717 FSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALA 776

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           YG++ T PG PIRI KNLR C DCH+A T IS I+  EII+RD NRFHHF++G C+C  Y
Sbjct: 777 YGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDY 836

Query: 834 W 834
           W
Sbjct: 837 W 837



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 248/543 (45%), Gaps = 86/543 (15%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS--NVFVCNALMAMYARCDTLSYARQ 191
           D +     L+ C     +R G +VH  +   G     ++F  N L+ MY +   L+ AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD--------------VKVQ 237
           LFD M +    ++VS+ T+V A+AQ GD E    LF R+  +              + + 
Sbjct: 118 LFDRMPER---NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 238 GDGVSLVNALSACASLGTWSRGKQ---------------CGMMEEAKKVFERMKVKDVVS 282
            D   L   + +CA    W  G                 C ++ +A+ VF  +  KD V 
Sbjct: 175 MDAAGLAGGVHSCA----WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVV 230

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           W AMV+ YS     E+AF +F KMR                                   
Sbjct: 231 WTAMVSCYSENDCPENAFRVFSKMR----------------------------------- 255

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G +PN   L S+L     + +++LGK  H   IK   +++ + P    V  AL+DMYA
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIK---TLNDTEPH---VGGALLDMYA 309

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  AR+ F+ I P + DV   + MI  Y+Q+     A  LF ++ +   L  PN +
Sbjct: 310 KCGDIKDARLAFEMI-PYD-DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVL--PNEY 365

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           +LS  L AC  +  L FG+QIH + ++  +E  + FV N L+D Y++  D+D++  +F +
Sbjct: 366 SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDL-FVGNALMDFYAKCNDMDSSLKIFSS 424

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L+  N VSW +++ G+   GLG++A   F +M+   +    VT+  +L AC+ +  +   
Sbjct: 425 LRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            +   S+ K    +        ++D   +   + +A+++ + + ME   I W A+++G  
Sbjct: 485 GQIHCSIEKS-TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYA 542

Query: 643 IHA 645
           +H 
Sbjct: 543 LHG 545



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 222/481 (46%), Gaps = 27/481 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++        P+NAFR+F +M   G  P+ +    VLKA   LPS   G  +H    
Sbjct: 231 WTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAI 290

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  D+   V  AL+ MYA+C  +  AR  F EM      D++  + +++ YAQS   E 
Sbjct: 291 KTLNDTEPHVGGALLDMYAKCGDIKDARLAF-EMIPYD--DVILLSFMISRYAQSNQNEQ 347

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF R+     V  +  SL + L AC ++     GKQ  +   A K+       D+  
Sbjct: 348 AFELFLRLMRS-SVLPNEYSLSSVLQACTNMVQLDFGKQ--IHNHAIKIGHE---SDLFV 401

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++    + +  +F  +R      N V+W+ ++ G++Q G G EAL VF +MQ
Sbjct: 402 GNALMDFYAKCNDMDSSLKIFSSLRDA----NEVSWNTIVVGFSQSGLGEEALSVFCEMQ 457

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              +    VT  S+L  CAS  ++    + HC   K   +      +D ++ N+LID YA
Sbjct: 458 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN------NDTVIGNSLIDTYA 511

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  A  +F  +    RD+ +W  +I  Y+ +G A DAL LF +M + +  V+ N  
Sbjct: 512 KCGYIRDALKVFQHLM--ERDIISWNAIISGYALHGQAADALELFDRMNKSN--VESNDI 567

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFD 521
           T    L  C+    +  G  +   +  +           C++ +  R+G ++ A + + D
Sbjct: 568 TFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGD 627

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVD 580
                + + W +L++   +H   + A   F   +   + P D  T+++L    + +G +D
Sbjct: 628 IPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLD 685

Query: 581 Q 581
           Q
Sbjct: 686 Q 686



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 192/422 (45%), Gaps = 28/422 (6%)

Query: 249 ACASL--GTWSRGKQCGMMEEAKKVFERMKVK--DVVSWNAMVTGYSRIGSFEDAFALFK 304
           ACA    G  +RG   G       V  R  V   D+   N ++  Y ++G    A  LF 
Sbjct: 61  ACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFD 120

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M + N+    V++  ++  +AQRG    A  +FR++++ G E N   L ++L    ++ 
Sbjct: 121 RMPERNM----VSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           A  L    H    K        H  +  V + LID Y+ C  V  A  +F+ I  K  D 
Sbjct: 177 AAGLAGGVHSCAWKL------GHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRK--DA 228

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             WT M+  YS+N    +A  +F +M  +    KPN F L+  L A   L ++  G+ IH
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKM--RVSGCKPNPFALTSVLKAAVCLPSVVLGKGIH 286

Query: 485 AYVLR--NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
              ++  N  E   P V   L+DMY++ GDI  AR+ F+ +   +V+  + +++ Y    
Sbjct: 287 GCAIKTLNDTE---PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSN 343

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
             ++A   F ++ +  + P+  +   +L AC++   +D G K   + + + G  +     
Sbjct: 344 QNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVG 402

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
             ++D   + N +D ++++   +  +   + W  ++ G    +   LGE A +   E+++
Sbjct: 403 NALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNTIVVG---FSQSGLGEEALSVFCEMQA 458

Query: 663 EK 664
            +
Sbjct: 459 AQ 460



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCA--LMACARLAALRFGRQIHAYVLR-NQYEMLIPFV 499
           +LA+ P +        P   + +CA  L  C      R GR +H +V+R      L  F 
Sbjct: 47  SLAILPSV--------PGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFC 98

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           AN L++MY + G + +AR +FD + +RN+VS+ +L+  +   G  + A   F ++R EG
Sbjct: 99  ANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEG 157


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/686 (36%), Positives = 396/686 (57%), Gaps = 38/686 (5%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           +VH  +  SGF S  F+ + L+  Y +C +L+ AR+LFDE+       IV+WN++++++ 
Sbjct: 22  AVHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARKLFDELPSR---HIVTWNSMISSHI 77

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
             G ++  +  +  M  +  V  D  +      A + LG    G++         V   +
Sbjct: 78  SHGKSKEAVEFYGNMLME-GVLPDAYTFSAISKAFSQLGLIRHGQRA----HGLAVVLGL 132

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           +V D    +A+V  Y++     DA  +F+++ +++V    V ++A+I GYAQ G   EAL
Sbjct: 133 EVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDV----VLFTALIVGYAQHGLDGEAL 188

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL-SVDGSHPDDLMVI 394
            +F  M   G++PN  TL  +L  C ++G L+ G+  H   +K  L SV  S        
Sbjct: 189 KIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQT------ 242

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L+ MY++C  ++ +  +F+ +   N+   TWT  +    QNG    A+++F +M +  
Sbjct: 243 -SLLTMYSRCNMIEDSIKVFNQLDYANQ--VTWTSFVVGLVQNGREEVAVSIFREMIRCS 299

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-----NQYEMLIPFVANCLIDMYSR 509
             + PN FTLS  L AC+ LA L  G QIHA  ++     N+Y          LI++Y +
Sbjct: 300 --ISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKY------AGAALINLYGK 351

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G++D AR VFD L + +VV+  S++  Y  +G G +A   F++++  GL P+GVTF+ +
Sbjct: 352 CGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISI 411

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L AC+++G+V++G + F S+     I    +H+ C++DLLGR+ RL+EA  LIE +   P
Sbjct: 412 LLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NP 470

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
             ++W  LLN C+IH  VE+ E   +++LEL     G++ LL+N+YA+AG+W  V  ++S
Sbjct: 471 DVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKS 530

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
            ++   +KK P  SWV       TF  GD +HP+S +I+E+L GL++++K +GY P T F
Sbjct: 531 TIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRF 590

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKNLRICGDCHSAITFISMII 808
            L D+D+E+K   L+ HSEKLA+AY +  T    T IRI KNLR+CGDCHS I F+S++ 
Sbjct: 591 VLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLT 650

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
             +II RDS RFHHFK G C+CK YW
Sbjct: 651 GRDIIARDSKRFHHFKGGLCSCKDYW 676



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 258/535 (48%), Gaps = 34/535 (6%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSH-LIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
             KSLT +  +H  +I    ++    H LI  Y+   + + A  L   + PS   +  WN
Sbjct: 13  HTKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCGSLAEARKLFDEL-PSR-HIVTWN 70

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ++I   +       A   +  M+  G  PD YTF  + KA  +L   R G   H +    
Sbjct: 71  SMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVL 130

Query: 165 GFDS-NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           G +  + FV +AL+ MYA+ D +  A  +F  + +    D+V +  ++  YAQ G     
Sbjct: 131 GLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEK---DVVLFTALIVGYAQHGLDGEA 187

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVS 282
           L +F  M  +  V+ +  +L   L  C +LG    G+   G++   K   E +    V S
Sbjct: 188 LKIFEDMV-NRGVKPNEYTLACILINCGNLGDLVNGQLIHGLV--VKSGLESV----VAS 240

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             +++T YSR    ED+  +F ++       N VTW++ + G  Q G    A+ +FR+M 
Sbjct: 241 QTSLLTMYSRCNMIEDSIKVFNQLDYA----NQVTWTSFVVGLVQNGREEVAVSIFREMI 296

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            C + PN  TL S+L  C+S+  L +G++ H  T+K  L +DG+         ALI++Y 
Sbjct: 297 RCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMK--LGLDGNKYAG----AALINLYG 350

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC ++D AR +FD +     DV     MI +Y+QNG  ++AL LF ++  ++  + PN  
Sbjct: 351 KCGNMDKARSVFDVLTE--LDVVAINSMIYAYAQNGFGHEALELFERL--KNMGLVPNGV 406

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T    L+AC     +  G QI A +  N    L      C+ID+  RS  ++ A ++ + 
Sbjct: 407 TFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEE 466

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVL--LYACS 574
           ++  +VV W +L+    +HG  + A     ++ +  LAP DG T ++L  LYA +
Sbjct: 467 VRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKILE--LAPGDGGTHILLTNLYASA 519


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 276/804 (34%), Positives = 424/804 (52%), Gaps = 38/804 (4%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPF-S 99
           LLR C +L  V  +H  I   + T      + L+AAY      +P L   + I   P  +
Sbjct: 8   LLRSCTALPHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAP-LHAARLIDEMPRRN 66

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVH 158
              +N LI    R  LP  A   F +     G   D +T+   L AC      R G +VH
Sbjct: 67  AVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVH 126

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A+    G  + VF+ N+L +MYA C  +  AR++FD   +    D VSWN++++ Y ++G
Sbjct: 127 AMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEH---DDVSWNSLLSGYVRAG 183

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK--VFERMK 276
             E  L +F+ M     +  +  +L + +  CAS     R      + EA    V +   
Sbjct: 184 AREETLKVFSLMCHH-GLGWNSFALGSIIKCCASGSDVGR-----HIAEAVHGCVVKAGL 237

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ------RGH 330
             D+   +AM+  Y++ G+  +A ALFK +   NV    + ++A+IAG+ +      +  
Sbjct: 238 DADLFLASAMIDMYAKRGALTNAVALFKSVPDPNV----IVFNAMIAGFCRDEAAVGKEV 293

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
             EAL ++ +MQ  G++P+  T  S+L  C   G    GK+ H   +K       S  DD
Sbjct: 294 SREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKH------SFHDD 347

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
             + +ALID+Y+    ++     F ++ PK +D+ TWT MI    QN     AL LF + 
Sbjct: 348 DYIGSALIDLYSDSGCMEDGYRCFRSL-PK-QDIVTWTSMISGCVQNELFEKALRLFQES 405

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                 +KP+ FT+S  + ACA LA  R G QI    ++  +      + N  I M +RS
Sbjct: 406 ICYG--LKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTA-MGNSFIHMCARS 462

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           GD+D     F  ++ R+VVSW+++++ +  HG    A   F++M    +AP+ VTFL +L
Sbjct: 463 GDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVL 522

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            ACSH G+VD GL+Y++ M  E+G+S   +H  C+VDLLGRA RL +A   I        
Sbjct: 523 TACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDD 582

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
            ++W +LL  CRIH ++E G+L A+++++LE     SY +L N+Y +AG     ++ R L
Sbjct: 583 AVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDL 642

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           MK  GVKK PG SW++ + G  +F  GD++HP+S  IY+ LA ++ +I+ +      S  
Sbjct: 643 MKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANTDNASTG 702

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
              +   E+ +L+  HSEK+A+A+G++      PIR+ KNLR+C DCHS +  IS   N 
Sbjct: 703 SDGISSSEQ-NLVGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENR 761

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EIILRD  RFHHF+ GSC+C  YW
Sbjct: 762 EIILRDGIRFHHFRGGSCSCGDYW 785


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/735 (33%), Positives = 399/735 (54%), Gaps = 67/735 (9%)

Query: 147 ELPSSRC----------GSSVHAVICSSGFDSNVFVCNALMAMYARC---DTLSYARQLF 193
           E PSS C          G  +HA    +G    +F  + L++ ++     D L ++R LF
Sbjct: 8   ENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLF 67

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
            ++  P   ++  WNT++  Y++S +    ++L+  M        +  +    L++CA L
Sbjct: 68  SQIDCP---NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARL 124

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
            +   G      E    + +     D+   NA++  YS  G+   A  LF     E++  
Sbjct: 125 SSLEPGH-----EVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLF----DESLVR 175

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           ++V+++ +I GYA+      AL +F +MQ  G+ P+  T V+L S C+ +    +GK+ H
Sbjct: 176 DLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIH 235

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK------------- 420
               K + S+D     ++++ +A++DMYAKC  +++A  +F  +                
Sbjct: 236 AQVYKNLRSID----SNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGY 291

Query: 421 -----------------NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
                             RDV +WT MI  YSQ G  ++AL LF +M  +   +KP+  T
Sbjct: 292 ARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEM--EALGIKPDEVT 349

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF--- 520
           L   L ACARL A   G++++   + N        +   ++DMY++ G ID+A  +F   
Sbjct: 350 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409

Query: 521 -DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
             N+K   V  + S++ G   HGLG+ A   F ++   GL PD VTF+ +L AC HSG++
Sbjct: 410 GKNMKTGFV--FNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLI 467

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           ++G K F+SM   +GI  + EHY C+VDLLGR   L+EA +L++ MP E   +IW ALL+
Sbjct: 468 EEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLS 527

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR H NV++GE+A  +LLE+E++    Y LLSNI A+A +W++  ++R +M+  G++K 
Sbjct: 528 ACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP 587

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG S+++       F   D++HPQ ++I  +L  +  R+K+ GYVP T+  + D+D+EEK
Sbjct: 588 PGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEK 647

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             ++  HSEKLALA+G++  +P   IRI KNLRIC DCH A   +S I   EI +RD+ R
Sbjct: 648 ESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMR 707

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF+ GSC+C  +W
Sbjct: 708 FHHFRNGSCSCMDFW 722



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 267/541 (49%), Gaps = 63/541 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYV---SHNAPSPALSLLQRISPSP 97
           LL  CKS  Q   IH Q IV  L H     S LI+ +    S +    +  L  +I    
Sbjct: 15  LLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCP- 73

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGELPSSRCGSS 156
            ++F WN +IR   R   P  A  L++ M+ +G  P + +TFPF+L +C  L S   G  
Sbjct: 74  -NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE 132

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VH+ I   GF+S++FV NAL+ +Y+    L+ AR LFDE     + D+VS+NT++  YA+
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESL---VRDLVSYNTMIKGYAE 189

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
               E  L LF  M  +  +  D  + V   S C+ L   + GKQ               
Sbjct: 190 VNQPESALCLFGEMQ-NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSN 248

Query: 262 -------------CGMMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                        CG++  A++VF  M   K   +W++MV GY+R G    A  LF  M 
Sbjct: 249 ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMH 308

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           +     +V++W+A+I+GY+Q G   EAL++F++M+  G++P+ VTLV++LS CA +GA  
Sbjct: 309 ER----DVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFD 364

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LGK  +   I+     +G    + ++  A++DMYAKC S+D A  +F  +    +    +
Sbjct: 365 LGKRLYHQYIE-----NGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVF 419

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI---- 483
             MI   +Q+G    A+ +F ++      +KP+  T    L AC     +  G+++    
Sbjct: 420 NSMIAGLAQHGLGETAITVFRELISTG--LKPDEVTFVGVLCACGHSGLIEEGKKLFESM 477

Query: 484 -HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            +AY ++ Q E        C++D+  R G ++ A  +   +  + N V W +L++    H
Sbjct: 478 FNAYGIKPQMEHY-----GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTH 532

Query: 542 G 542
           G
Sbjct: 533 G 533


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 344/576 (59%), Gaps = 33/576 (5%)

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           EA+K+F++M   + +SWN +V+GY + G   +A  +F KM + NV    V+W+A+I GY 
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYV 67

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q G   EA  +F +M     E NVV+   +L G    G +   ++            D  
Sbjct: 68  QEGLIEEAELLFWRMP----ERNVVSWTVMLGGLIEDGRVDEARQL----------FDMM 113

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-----------RDVATWTVMIGSYS 435
              D++    +ID       +  AR +FD +  +N           +D  TW+ MI  Y 
Sbjct: 114 PVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYE 173

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           + G   +ALALF  M  Q + V+P+  ++   L  C  LA+L  GRQ+H+ ++R+Q+++ 
Sbjct: 174 RKGFELEALALFSLM--QREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDID 231

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           I +V++ LI MY + GD+ TA+ VFD    +++V W S++ GY  HG G+KA   F  M 
Sbjct: 232 I-YVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMF 290

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
              +APD +TF+ +L ACS++G V +GL+ F+SM  ++ +  + EHYAC+VDLLGRA +L
Sbjct: 291 SSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKL 350

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           +EA+ LIE MP+E   I+W ALL  CR H N++L E+AA +LL+LE    G Y LLSN+Y
Sbjct: 351 NEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLY 410

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT-HPQSQKIYEILAGL 734
           ++  RWKDV  +R  M+   ++K PGCSW++  +    F  G  T HP+ + I + L  L
Sbjct: 411 SSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKL 470

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
              ++  GY P  SF +HDVD+EEK   L +HSEKLA+AYG+L    G PIR+ KNLR+C
Sbjct: 471 GALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVC 530

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           GD HS I  I+ +   EIILRD+NRFHHFK+G C+C
Sbjct: 531 GDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSC 566



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 204/416 (49%), Gaps = 43/416 (10%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           ++N    N L++ Y +   +S AR++FD+M +    ++VSW  ++  Y Q G  E   +L
Sbjct: 22  ETNTISWNGLVSGYVQNGMISEARKVFDKMPER---NVVSWTAMIRGYVQEGLIEEAELL 78

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F RM              N +S    LG      + G ++EA+++F+ M VKDVV+   M
Sbjct: 79  FWRMPER-----------NVVSWTVMLGGLI---EDGRVDEARQLFDMMPVKDVVASTNM 124

Query: 287 VTGYSRIGSFEDAFALFKKMRQENV---------KLNVVTWSAVIAGYAQRGHGHEALDV 337
           + G    G   +A  +F +M Q NV         + +  TWS +I  Y ++G   EAL +
Sbjct: 125 IDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALAL 184

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F  MQ  G+ P+  +++S+LS C S+ +L  G++ H   ++    +      D+ V + L
Sbjct: 185 FSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI------DIYVSSVL 238

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I MY KC  +  A+ +FD  + K  D+  W  +I  Y+Q+G    AL +F  MF     +
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSK--DIVMWNSIIAGYAQHGFGEKALEVFHDMFSSS--I 294

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDT 515
            P+  T    L AC+    ++ G +I    ++++Y+ + P   +  C++D+  R+G ++ 
Sbjct: 295 APDEITFIGVLSACSYTGKVKEGLEIFES-MKSKYQ-VDPKTEHYACMVDLLGRAGKLNE 352

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           A  + +N+  + + + W +L+     H   D A  A  ++ +  L P+     +LL
Sbjct: 353 AMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQ--LEPNNAGPYILL 406



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 118/265 (44%), Gaps = 23/265 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ +I+   R      A  LF  M R G  P   +   VL  CG L S   G  VH+ + 
Sbjct: 165 WSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLV 224

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S FD +++V + L+ MY +C  L  A+++FD        DIV WN+I+A YAQ G  E 
Sbjct: 225 RSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK---DIVMWNSIIAGYAQHGFGEK 281

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M     +  D ++ +  LSAC+           G ++E  ++FE MK K  V 
Sbjct: 282 ALEVFHDMFSS-SIAPDEITFIGVLSACS---------YTGKVKEGLEIFESMKSKYQVD 331

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  MV    R G   +A  L + M    V+ + + W A++   A R H +  L  
Sbjct: 332 PKTEHYACMVDLLGRAGKLNEAMNLIENM---PVEADAIVWGALLG--ACRTHKNLDLAE 386

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCAS 362
               +   LEPN      LLS   S
Sbjct: 387 IAAKKLLQLEPNNAGPYILLSNLYS 411


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/517 (43%), Positives = 322/517 (62%), Gaps = 11/517 (2%)

Query: 318  WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
            W+ +I G+A  G    +L+++ +M   GL+P+       L  CA +  L  GK  H + +
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845

Query: 378  KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
                S      +DL V  AL+DMYAKC  ++ AR++FD +A   RD+ +WT MI  Y+ N
Sbjct: 846  CCGCS------NDLFVDAALVDMYAKCGDIEAARLVFDKMAV--RDLVSWTSMISGYAHN 897

Query: 438  GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
            G  ++ L  F  M  +   V PN  ++   L+AC  L ALR G   H+YV++  +E  I 
Sbjct: 898  GYNSETLGFFDLM--RSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDI- 954

Query: 498  FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
             VA  ++DMYS+ G +D AR +FD    +++V W++++  YG+HG G KA   FDQM K 
Sbjct: 955  LVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKA 1014

Query: 558  GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
            G+ P  VTF  +L ACSHSG++++G  YF  M++EF I+ +  +YAC+VDLLGRA +L E
Sbjct: 1015 GVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSE 1074

Query: 618  AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
            AV+LIE MP+EP   IW +LL  CRIH N++L E  A+ L  L+    G + LLSNIYA 
Sbjct: 1075 AVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAA 1134

Query: 678  AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
              RW +V ++R +M   G  K  G S V+       F VGDR+HPQ +K+Y  L  L   
Sbjct: 1135 KSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAP 1194

Query: 738  IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
            +K +GYVP T F LHD+++E K   L  HSE+LA+A+G++ T+PGT +RITKNLRICGDC
Sbjct: 1195 MKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDC 1254

Query: 798  HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            H+AI  IS I+N  I++RD +RFH F++G C+C  YW
Sbjct: 1255 HNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 259/749 (34%), Positives = 397/749 (53%), Gaps = 39/749 (5%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFS 99
           L + C +   V  +H Q+    + H   +       S  A   +L   +++   +P P +
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILH--DTFFATKLNSLYAKCASLQAARKVFDETPHP-N 66

Query: 100 VFWWNALIRRAVRLRLPDNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V  WN+ +R   R +  +   RLF L +   G  PD +T P  LKAC  L     G  +H
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 159 AVICSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
                +    S++FV +AL+ +Y++C  +  A ++F+E  +P   D V W ++V  Y Q+
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRP---DTVLWTSMVTGYQQN 183

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
            D E  L LF++M     V  D V+LV+ +SACA L     G     +     V  R   
Sbjct: 184 NDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGL-----VIRREFD 238

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+   N+++  Y++ G  + A  LF KM +++V    ++WS +IA YA     +EAL++
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDV----ISWSTMIACYANNEAANEALNL 294

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M     EPN VT+VS L  CA    L  GK+ H   + +   +D S      V  AL
Sbjct: 295 FHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFS------VSTAL 348

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMY KC   D A  +F  + PK +DV +W  ++  Y+QNG A  ++ +F  M      +
Sbjct: 349 IDMYMKCSCPDEAVDLFQRL-PK-KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDG--I 404

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           +P+A  +   L A + L   +    +H YV+R+ +   + FV   LI++YS+ G +  A 
Sbjct: 405 QPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNV-FVGASLIELYSKCGSLGDAV 463

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHS 576
            +F  +  R+VV W+S++  YG+HG G +A   FDQM K   + P+ VTFL +L ACSH+
Sbjct: 464 KLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHA 523

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++GLK FD M  ++ +   +EH+  +VDLLGR  +L +A+++I  MP+   P +W A
Sbjct: 524 GLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGA 583

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL  CRIH N+E+GE AA  L  L+    G Y LLSNIYA  G+W +VA +R+ +K  G+
Sbjct: 584 LLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGL 643

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK  G S V+ + G  +F   DR HP SQKIYE+L  L  ++    Y+P   F LHD   
Sbjct: 644 KKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDT-- 701

Query: 757 EEKGDLL--FEHSEKLALAYGILTTAPGT 783
              G +L  ++  +     Y  + +APGT
Sbjct: 702 ---GAVLQFWQRIKATESKYKTIGSAPGT 727



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 197/412 (47%), Gaps = 42/412 (10%)

Query: 153  CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            C    HA I + G   +  +      MY   + +  A  +F+++  P  C  + WN ++ 
Sbjct: 735  CLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDI--PNPCSFL-WNVMIR 791

Query: 213  AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMM 265
             +A  G     L L+++M  +  ++ D  +   AL +CA L    RGK        CG  
Sbjct: 792  GFATDGRFLSSLELYSKMM-EKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCS 850

Query: 266  EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                         D+    A+V  Y++ G  E A  +F KM   ++    V+W+++I+GY
Sbjct: 851  ------------NDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDL----VSWTSMISGY 894

Query: 326  AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
            A  G+  E L  F  M+  G+ PN V+++S+L  C ++GAL  G+  H Y I+       
Sbjct: 895  AHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF-- 952

Query: 386  SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
                D++V  A++DMY+KC S+D+AR +FD  A K  D+  W+ MI SY  +G    A+ 
Sbjct: 953  ----DILVATAIMDMYSKCGSLDLARCLFDETAGK--DLVCWSAMIASYGIHGHGRKAID 1006

Query: 446  LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CL 503
            LF QM +    V+P+  T +C L AC+    L  G+    + L  +  ++   ++N  C+
Sbjct: 1007 LFDQMVKAG--VRPSHVTFTCVLSACSHSGLLEEGKMY--FQLMTEEFVIARKLSNYACM 1062

Query: 504  IDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +D+  R+G +  A  + +N+  + +   W SL+    +H   D A    D +
Sbjct: 1063 VDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL 1114



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 184/383 (48%), Gaps = 31/383 (8%)

Query: 77   YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
            YVS N    A  + + I P+P S F WN +IR         ++  L+ +MM +G  PD++
Sbjct: 762  YVSFNRIDAASIVFEDI-PNPCS-FLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKF 819

Query: 137  TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
             FPF LK+C  L   + G  +H  +   G  +++FV  AL+ MYA+C  +  AR +FD+M
Sbjct: 820  AFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKM 879

Query: 197  FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
                + D+VSW ++++ YA +G     L  F  M     V  + VS+++ L AC +LG  
Sbjct: 880  ---AVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSS-GVIPNRVSILSVLLACGNLGAL 935

Query: 257  SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
             +G+          V +     D++   A++  YS+ GS + A  LF     E    ++V
Sbjct: 936  RKGEWF-----HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF----DETAGKDLV 986

Query: 317  TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK-----E 371
             WSA+IA Y   GHG +A+D+F QM   G+ P+ VT   +LS C+  G L  GK      
Sbjct: 987  CWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLM 1046

Query: 372  THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            T  + I R LS              ++D+  +   +  A  + + + P   D + W  ++
Sbjct: 1047 TEEFVIARKLS----------NYACMVDLLGRAGQLSEAVDLIENM-PVEPDASIWGSLL 1095

Query: 432  GSYSQNGGANDALALFPQMFQQD 454
            G+   +   + A  +   +F  D
Sbjct: 1096 GACRIHNNLDLAEKIADHLFHLD 1118


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/642 (38%), Positives = 376/642 (58%), Gaps = 36/642 (5%)

Query: 194 DEMFQPGICD-IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           D + +P   D I   N I+A   +SGD +G L +F  M     +  +  SL+  +S    
Sbjct: 50  DYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWN--SLLIGIS---- 103

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                  K    M EA ++F+ +   D  S+N M++ Y R  +FE A + F +M  ++  
Sbjct: 104 -------KDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA- 155

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
               +W+ +I GYA+RG   +A ++F  M    +E N V+  +++SG    G L   K +
Sbjct: 156 ---ASWNTMITGYARRGEMEKARELFYSM----MEKNEVSWNAMISGYIECGDL--EKAS 206

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H + +  V  V        +   A+I  Y K K V++A  MF  +   N+++ TW  MI 
Sbjct: 207 HFFKVAPVRGV--------VAWTAMITGYMKAKKVELAEAMFKDMTV-NKNLVTWNAMIS 257

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y +N    D L LF  M ++   ++PN+  LS AL+ C+ L+AL+ GRQIH  V ++  
Sbjct: 258 GYVENSRPEDGLKLFRAMLEEG--IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
              +  + + LI MY + G++  A  +F+ +K+++VV+W ++++GY  HG  DKA   F 
Sbjct: 316 CNDVTALTS-LISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFR 374

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M    + PD +TF+ +L AC+H+G+V+ G+ YF+SM +++ +  + +HY C+VDLLGRA
Sbjct: 375 EMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRA 434

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            +L+EA++LI  MP  P   ++  LL  CR+H NVEL E AA +LL+L S+    Y  L+
Sbjct: 435 GKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLA 494

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIYA+  RW+DVAR+R  MK + V K PG SW++ +     F   DR HP+   I++ L 
Sbjct: 495 NIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLK 554

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L +++K  GY P+  FALH+V++E+K  LL  HSEKLA+A+G +    G+ I++ KNLR
Sbjct: 555 ELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLR 614

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH AI FIS I   EII+RD+ RFHHFK+GSC+C  YW
Sbjct: 615 ICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 196/417 (47%), Gaps = 37/417 (8%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +F  N +I R VR    D A R+F  M  +    +  T+  +L    + PS       H 
Sbjct: 61  IFPLNKIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRMM--EAHQ 114

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +      + + F  N +++ Y R      A+  FD M      D  SWNT++  YA+ G+
Sbjct: 115 LF-DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRM---PFKDAASWNTMITGYARRGE 170

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            E    LF  M     ++ + VS    +S            +CG +E+A   F+   V+ 
Sbjct: 171 MEKARELFYSM-----MEKNEVSWNAMISGYI---------ECGDLEKASHFFKVAPVRG 216

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VV+W AM+TGY +    E A A+FK M    V  N+VTW+A+I+GY +     + L +FR
Sbjct: 217 VVAWTAMITGYMKAKKVELAEAMFKDM---TVNKNLVTWNAMISGYVENSRPEDGLKLFR 273

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M   G+ PN   L S L GC+ + AL LG++ H    K  L       +D+  + +LI 
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLC------NDVTALTSLIS 327

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY KC  +  A  +F+ +  K +DV  W  MI  Y+Q+G A+ AL LF +M   D  ++P
Sbjct: 328 MYCKCGELGDAWKLFEVM--KKKDVVAWNAMISGYAQHGNADKALCLFREMI--DNKIRP 383

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +  T    L+AC     +  G      ++R+      P    C++D+  R+G ++ A
Sbjct: 384 DWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 20/210 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   V    P++  +LF  M+  G  P+       L  C EL + + G  +H ++ 
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVS 311

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S   ++V    +L++MY +C  L  A +LF+ M +    D+V+WN +++ YAQ G+A+ 
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKK---DVVAWNAMISGYAQHGNADK 368

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV- 281
            L LF  M  D K++ D ++ V  L AC            G++      FE M V+D   
Sbjct: 369 ALCLFREMI-DNKIRPDWITFVAVLLAC---------NHAGLVNIGMAYFESM-VRDYKV 417

Query: 282 -----SWNAMVTGYSRIGSFEDAFALFKKM 306
                 +  MV    R G  E+A  L + M
Sbjct: 418 EPQPDHYTCMVDLLGRAGKLEEALKLIRSM 447


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/740 (34%), Positives = 402/740 (54%), Gaps = 60/740 (8%)

Query: 139  PFVLKACGELPSSRCGS-----SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
            P  L++C    S+         ++HA+   +G    +   N L+ +Y +   + +AR+LF
Sbjct: 288  PLWLQSCSLFHSTISNGPPPLGTLHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLF 347

Query: 194  DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-------------------DV 234
            DE+ Q    +  +W  +++ ++++G +E    LF  M                     D+
Sbjct: 348  DEIPQR---NTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDI 404

Query: 235  KVQ-GDGVS---LVNALSACASLGT--WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
             +Q G GV    L N + A   LG        +C + E A++VFE M   DVVSWN M++
Sbjct: 405  NLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMIS 464

Query: 289  GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
             Y R G  E +  +F+++  ++V    V+W+ ++ G  Q G+  +AL+    M  CG E 
Sbjct: 465  AYLRAGDVEKSLDMFRRLPYKDV----VSWNTIVDGLMQFGYERQALEQLYCMVECGTEF 520

Query: 349  NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
            +VVT    L   +S+  + LG++ H   +K     DG       + ++L++MY KC  +D
Sbjct: 521  SVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDG------FIRSSLVEMYCKCGRMD 574

Query: 409  VARVMFDAIAP---KNRD-----------VATWTVMIGSYSQNGGANDALALFPQMFQQD 454
             A ++   +     KN +           + +W +M+  Y  NG   D L  F  M ++ 
Sbjct: 575  NASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRE- 633

Query: 455  KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             LV  +  T++  + ACA    L FGR +HAY  +  +  +  +V + LIDMYS+SG +D
Sbjct: 634  -LVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHR-IDAYVGSSLIDMYSKSGSLD 691

Query: 515  TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
             A  +F    + N+V WTS+++G  +HG G +A   F++M  +G+ P+ VTFL +L AC 
Sbjct: 692  DAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACC 751

Query: 575  HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            H+G++++G +YF  M   + I+   EH   +VDL GRA  L E    I    +     +W
Sbjct: 752  HAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVW 811

Query: 635  VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             + L+ CR+H NVE+G+  +  LL++     G+Y LLSN+ A+  RW + AR+RSLM   
Sbjct: 812  KSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQR 871

Query: 695  GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
            G+KK+PG SW+Q K+   TF +GDR+HPQ ++IY  L  L+ R+K +GY       + DV
Sbjct: 872  GIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDV 931

Query: 755  DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
            ++E+   L+  HSEKLA+ +GI+ TA  TPIRI KNLRIC DCH+ I + S +++ EIIL
Sbjct: 932  EEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIL 991

Query: 815  RDSNRFHHFKEGSCTCKGYW 834
            RD +RFHHFK G C+C  YW
Sbjct: 992  RDIHRFHHFKHGGCSCGDYW 1011



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 135/560 (24%), Positives = 243/560 (43%), Gaps = 70/560 (12%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           ++L+  YV  +    A  L   I         W  LI    R    +  F+LF +M  +G
Sbjct: 328 NYLLTLYVKSSNMDHARKLFDEIPQRNTQT--WTILISGFSRAGSSEVVFKLFREMRAKG 385

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P++YT   + K C    + + G  VHA +  +G D++V + N+++ +Y +C    YA 
Sbjct: 386 ACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAE 445

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++F+ M +    D+VSWN +++AY ++GD E  L +F R+        D VS    +   
Sbjct: 446 RVFELMNEG---DVVSWNIMISAYLRAGDVEKSLDMFRRLP-----YKDVVSWNTIVDGL 497

Query: 251 ASLGTWSRG-------KQCG------------------MMEEAKKVFERMKVK-----DV 280
              G   +         +CG                   + E  +    M +K     D 
Sbjct: 498 MQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDG 557

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQE------------NVKLNVVTWSAVIAGYAQR 328
              +++V  Y + G  ++A  + K +  +             +K  +V+W  +++GY   
Sbjct: 558 FIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWN 617

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   + L  FR M    +  ++ T+ +++S CA+ G L  G+  H Y  K        H 
Sbjct: 618 GKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKI------GHR 671

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            D  V ++LIDMY+K  S+D A  +F      N  +  WT MI   + +G    A+ LF 
Sbjct: 672 IDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPN--IVFWTSMISGCALHGQGKQAICLFE 729

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC--LIDM 506
           +M  Q   + PN  T    L AC     L  G + +  ++++ Y  + P V +C  ++D+
Sbjct: 730 EMLNQG--IIPNEVTFLGVLNACCHAGLLEEGCR-YFRMMKDAY-CINPGVEHCTSMVDL 785

Query: 507 YSRSGDI-DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGV 564
           Y R+G + +T   +F+N        W S ++   +H   +   W  + + +  +AP D  
Sbjct: 786 YGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQ--VAPSDPG 843

Query: 565 TFLVLLYACSHSGMVDQGLK 584
            +++L   C+ +   D+  +
Sbjct: 844 AYVLLSNMCASNHRWDEAAR 863


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/664 (38%), Positives = 382/664 (57%), Gaps = 68/664 (10%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           LM +YA C     AR +FDE+      ++V +N ++ +Y  +   +  L+++  M     
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDK---NVVFFNVMIRSYVNNHLYKDALLVYKTMY---- 112

Query: 236 VQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
            QG   D  +    L A +   +   G Q         V +     ++   N ++  Y +
Sbjct: 113 TQGFVPDMYTYPCVLKASSRSDSLWVGLQI-----HGAVLKIGLDLNLYVGNGLIAMYGK 167

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
             S ++A    +++  E    +VV+W+++++ YAQ G  ++AL++ R+M+   L+PN  T
Sbjct: 168 CKSLKEA----QQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCT 223

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           + SLL                        +V  +  D+++ +                + 
Sbjct: 224 MASLLP-----------------------AVTNTTSDNVLYV----------------KE 244

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           MF  +  K+  V +W VMI  Y  N    +A+ L+ QM  +   V+P+  ++   L A  
Sbjct: 245 MFLKLTKKS--VISWNVMIAMYVNNSMPKEAVVLYSQM--EANGVEPDVVSIVSVLPAYG 300

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
            L+AL  GR++H +  R +   L+P   + N LIDMY++ G +  AR VF+ ++ R+VVS
Sbjct: 301 DLSALSLGRRVHKFAERKK---LLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVS 357

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WTS+++ YG  G G  A   F +MR  GL PD + F+ +L ACSH+G++D G  YF+ M+
Sbjct: 358 WTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMA 417

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
            E GI+ + EH+AC+VDLLGRA ++DEA   I  MP+EP   +W  LL+ CR+++N+ +G
Sbjct: 418 -ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIG 476

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
            LAA++LL L  E  G Y LLSNIYA AGRW DVA IRS+M+  G+KK PG S V+  +G
Sbjct: 477 ILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDG 536

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
             TF  GD +HPQS+KIYE L  LV ++K +GY+P+T  ALHDV++E+K   L  HSEKL
Sbjct: 537 VHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKL 596

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+ I+ T PGTPIR+TKNLR+CGDCH A   IS I   EII+RD++RFHHF+EG C+C
Sbjct: 597 AVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSC 656

Query: 831 KGYW 834
             YW
Sbjct: 657 GDYW 660



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 232/506 (45%), Gaps = 66/506 (13%)

Query: 14  KTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPS-- 71
           K   +L+  F   +  S T   C +I    L Q   +  +  +H +++        PS  
Sbjct: 2   KAIASLSRYFATARQLSFTEDLCNRI----LDQYPDINTLKKLHGKVLNDQYLRWNPSVG 57

Query: 72  -HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
             L+  Y +   P  A  +   I+    +V ++N +IR  V   L  +A  ++  M  +G
Sbjct: 58  IKLMRVYAACGEPGLARHIFDEITDK--NVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG 115

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           + PD YT+P VLKA     S   G  +H  +   G D N++V N L+AMY +C +L  A+
Sbjct: 116 FVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQ 175

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           Q+ DE+      D+VSWN++V+ YAQ+G     L L   M   + ++ +  ++ + L A 
Sbjct: 176 QVLDEI---PCRDVVSWNSMVSVYAQNGRFNDALELCREMEA-LNLKPNDCTMASLLPAV 231

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
            +  + +       +   K++F ++  K V+SWN M+  Y      ++A  L+ +M    
Sbjct: 232 TNTTSDN-------VLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANG 284

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           V                                   EP+VV++VS+L     + AL LG+
Sbjct: 285 V-----------------------------------EPDVVSIVSVLPAYGDLSALSLGR 309

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H +  ++ L        +L++ NALIDMYAKC  +  AR +F+ +  + RDV +WT +
Sbjct: 310 RVHKFAERKKLL------PNLLLENALIDMYAKCGCLRDARAVFNQM--QFRDVVSWTSI 361

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I +Y + G   DA+A+F +M  ++  + P++      L AC+    L  GR     +   
Sbjct: 362 ISAYGKCGQGRDAVAVFAEM--RNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC 419

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTA 516
                +   A C++D+  R+G ID A
Sbjct: 420 GITPKLEHFA-CVVDLLGRAGKIDEA 444



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 25/219 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  WN +I   V   +P  A  L+ QM   G  PD  +   VL A G+L +   G  VH
Sbjct: 253 SVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVH 312

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDIVSWNTIVAAYAQS 217
                     N+ + NAL+ MYA+C  L  AR +F++M F+    D+VSW +I++AY + 
Sbjct: 313 KFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFR----DVVSWTSIISAYGKC 368

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------QCGMMEEAKK 270
           G     + +FA M     +  D ++ V+ L+AC+  G    G+       +CG+  + + 
Sbjct: 369 GQGRDAVAVFAEMRNS-GLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEH 427

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       +  +V    R G  ++A+   ++M  E
Sbjct: 428 ------------FACVVDLLGRAGKIDEAYGFIRQMPLE 454



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 1/146 (0%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +++H  VL +QY    P V   L+ +Y+  G+   AR +FD +  +NVV +  ++  Y  
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           + L   A   +  M  +G  PD  T+  +L A S S  +  GL+   ++ K  G+     
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLK-IGLDLNLY 156

Query: 601 HYACIVDLLGRANRLDEAVELIEGMP 626
               ++ + G+   L EA ++++ +P
Sbjct: 157 VGNGLIAMYGKCKSLKEAQQVLDEIP 182


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/632 (37%), Positives = 365/632 (57%), Gaps = 36/632 (5%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           +++S N ++  + +SGD    L +F  MT    V  + +           L  +S  +  
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSM-----------LAGYSNRR-- 50

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ A+++F+R+   D+ S+N M+  Y      E A   F +M  ++      +W+ +I
Sbjct: 51  GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDT----ASWNTMI 106

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +G++Q G   +A ++F  M       N V+  +++SG    G L L K+   + +  V S
Sbjct: 107 SGFSQNGMMDQARELFLVMPV----RNSVSWNAMISGYVESGDLDLAKQ--LFEVAPVRS 160

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V        +   A+I  + K   +++A   F+ +  KN  + TW  MI  Y +N  A +
Sbjct: 161 V--------VAWTAMITGFMKFGKIELAEKYFEEMPMKN--LVTWNAMIAGYIENCQAEN 210

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
            L LF +M +     +PN  +LS  L+ C+ L+AL+ G+Q+H  + ++     I      
Sbjct: 211 GLKLFKRMVESG--FRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNIT-AGTS 267

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ MY + GD++ A  +F  + Q++VV+W ++++GY  HG G+KA + FD+MR EG+ PD
Sbjct: 268 LLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPD 327

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TF+ +L AC+H+G VD G++YF+SM +++G+ A+ +HY C+VDLLGR  +L EAV+LI
Sbjct: 328 WITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLI 387

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + MP +P   I+  LL  CRIH N+EL E AA  LL L+ E    Y  L+N+YA   RW 
Sbjct: 388 KKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWD 447

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
            VA +R  MK   V K PG SW++ K     F  GDR HP+   I+E L  L ++++  G
Sbjct: 448 HVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAG 507

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP   +ALHDV +E+K  +L  HSEKLA+AYG++    GTPIR+ KNLR+CGDCHSA  
Sbjct: 508 YVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATK 567

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +IS I    II+RD+ RFHHF++G C+C  YW
Sbjct: 568 YISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 178/350 (50%), Gaps = 31/350 (8%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
           + ++F  N ++A Y     +  AR  FD+M    + D  SWNT+++ ++Q+G  +    L
Sbjct: 65  EPDIFSYNIMLACYLHNADVESARLFFDQM---PVKDTASWNTMISGFSQNGMMDQAREL 121

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F  M            + N++S  A +  +    + G ++ AK++FE   V+ VV+W AM
Sbjct: 122 FLVM-----------PVRNSVSWNAMISGYV---ESGDLDLAKQLFEVAPVRSVVAWTAM 167

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           +TG+ + G  E A   F++M  +    N+VTW+A+IAGY +       L +F++M   G 
Sbjct: 168 ITGFMKFGKIELAEKYFEEMPMK----NLVTWNAMIAGYIENCQAENGLKLFKRMVESGF 223

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
            PN  +L S+L GC+++ AL LGK+ H    K  +S       ++    +L+ MY KC  
Sbjct: 224 RPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSW------NITAGTSLLSMYCKCGD 277

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ A  +F  + P+ +DV TW  MI  Y+Q+G    AL LF +M  +D+ +KP+  T   
Sbjct: 278 LEDAWKLF-LVMPQ-KDVVTWNAMISGYAQHGAGEKALYLFDKM--RDEGMKPDWITFVA 333

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            L AC     +  G +    ++R+      P    C++D+  R G +  A
Sbjct: 334 VLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEA 383



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   +     +N  +LF +M+  G+ P+  +   VL  C  L + + G  VH +IC
Sbjct: 195 WNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLIC 254

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S    N+    +L++MY +C  L  A +LF  M Q    D+V+WN +++ YAQ G  E 
Sbjct: 255 KSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK---DVVTWNAMISGYAQHGAGEK 311

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
            L LF +M  D  ++ D ++ V  LSAC   G
Sbjct: 312 ALYLFDKMR-DEGMKPDWITFVAVLSACNHAG 342


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/594 (39%), Positives = 361/594 (60%), Gaps = 24/594 (4%)

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           SLV A+S+C S+        C  +    +V + +   D    + +V+ Y ++G  EDA  
Sbjct: 144 SLVFAISSCTSV------SYCSAIH--ARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQR 195

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGC 360
           LF +M   ++    V+W+++++G + RG+    L+ F +M+   G +PN VTL+S++S C
Sbjct: 196 LFDEMPNRDL----VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 251

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A +GAL  GK  H   +K  +S          V+N+LI+MY K   +D A  +F+ +   
Sbjct: 252 AXMGALDEGKSLHGVVVKLGMSGKAK------VVNSLINMYGKLGFLDAASQLFEEMPV- 304

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            R + +W  M+  ++ NG A   + LF  M +    + P+  T+   L AC      R  
Sbjct: 305 -RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG--INPDQATMVALLRACTDTGLGRQA 361

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             IHAY+ R  +   I  +A  L+++Y++ G ++ +  +F+ +K R+ ++WT+++ GY +
Sbjct: 362 ESIHAYIHRCGFNADI-IIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAV 420

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           H  G +A   FD M KEG+  D VTF  LL ACSHSG+V++G KYF+ MS+ + +  R +
Sbjct: 421 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 480

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HY+C+VDLLGR+ RL++A ELI+ MPMEP+  +W ALL  CR++ NVELG+  A +LL L
Sbjct: 481 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 540

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           +     +Y +LSNIY+ AG W+  +++R LMK   + + PGCS+++       F VGD+ 
Sbjct: 541 DPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 600

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP+S +I+  L  L+++I   G  P+T F LHD+D+E K D++ +HSEKLA+A+G+L T 
Sbjct: 601 HPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTG 660

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            G P+ ITKNLRICGDCHS   F S++    II+RDS RFHHF +G C+C+ YW
Sbjct: 661 SGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 194/386 (50%), Gaps = 43/386 (11%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           F + +C  +  S C S++HA +  S   S+ F+ + L++MY +      A++LFDEM   
Sbjct: 147 FAISSCTSV--SYC-SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNR 203

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D+VSWN++++  +  G     L  F RM  +   Q + V+L++ +SACA +G    G
Sbjct: 204 ---DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEG 260

Query: 260 K-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           K       + GM  +AK V            N+++  Y ++G  + A  LF++M      
Sbjct: 261 KSLHGVVVKLGMSGKAKVV------------NSLINMYGKLGFLDAASQLFEEMPVR--- 305

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            ++V+W++++  +   G+  + +D+F  M+  G+ P+  T+V+LL  C   G     +  
Sbjct: 306 -SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 364

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H Y  +   +       D+++  AL+++YAK   ++ +  +F+ I  K+RD   WT M+ 
Sbjct: 365 HAYIHRCGFNA------DIIIATALLNLYAKLGRLNASEDIFEEI--KDRDTIAWTAMLA 416

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+ +    +A+ LF  M ++   V+ +  T +  L AC+    +  G++   + + ++ 
Sbjct: 417 GYAVHACGREAIKLFDLMVKEG--VEVDHVTFTHLLSACSHSGLVEEGKKY--FEIMSEV 472

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTA 516
             + P + +  C++D+  RSG ++ A
Sbjct: 473 YRVEPRLDHYSCMVDLLGRSGRLEDA 498



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 151/337 (44%), Gaps = 21/337 (6%)

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  P+E T   V+ AC  + +   G S+H V+   G      V N+L+ MY +   L  A
Sbjct: 236 GRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 295

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
            QLF+EM    +  +VSWN++V  +  +G AE G+ LF  M     +  D  ++V  L A
Sbjct: 296 SQLFEEM---PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMK-RAGINPDQATMVALLRA 351

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           C   G    G+Q    E       R     D++   A++  Y+++G    +  +F++++ 
Sbjct: 352 CTDTGL---GRQA---ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKD 405

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                + + W+A++AGYA    G EA+ +F  M   G+E + VT   LLS C+  G +  
Sbjct: 406 R----DTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 461

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK+ +   +  V  V+      L   + ++D+  +   ++ A  +  ++ P       W 
Sbjct: 462 GKK-YFEIMSEVYRVE----PRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWG 515

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            ++G+    G       +  Q+   D     N   LS
Sbjct: 516 ALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLS 552



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 118/256 (46%), Gaps = 23/256 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN+++         +    LF  M R G +PD+ T   +L+AC +    R   S+H
Sbjct: 306 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 365

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A I   GF++++ +  AL+ +YA+   L+ +  +F+E+      D ++W  ++A YA   
Sbjct: 366 AYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR---DTIAWTAMLAGYAVHA 422

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                + LF  M  +  V+ D V+  + LSAC+           G++EE KK FE M   
Sbjct: 423 CGREAIKLFDLMVKE-GVEVDHVTFTHLLSACS---------HSGLVEEGKKYFEIMSEV 472

Query: 279 DVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             V      ++ MV    R G  EDA+ L K M  E    +   W A++   A R +G+ 
Sbjct: 473 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEP---SSGVWGALLG--ACRVYGNV 527

Query: 334 ALDVFRQMQFCGLEPN 349
            L      Q   L+P+
Sbjct: 528 ELGKEVAEQLLSLDPS 543


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/689 (36%), Positives = 387/689 (56%), Gaps = 45/689 (6%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA I +SG   N F+ N+LM  Y  C  L+ A+Q+F         ++VSW  +++  A+
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFH---HTPCKNVVSWTILISGLAK 99

Query: 217 SGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGT----------WSRGKQCGMM 265
           +      + +F  MT G+ K   + V++ + L A A+LG           W RG      
Sbjct: 100 NDCFVEAIDVFREMTMGNFK--PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG----- 152

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                 FE     +V    A+V  YS+ G    A  LF+ M + NV    V+W+A+++GY
Sbjct: 153 ------FE----GNVFVETALVDMYSKFGCMGVARQLFESMSERNV----VSWNAIVSGY 198

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           +  G   EA+D+F  M+  GL  +  T++SL+    SVG L +G   H + I+       
Sbjct: 199 SDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT------ 252

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
            + +D  +  AL+D+Y     VD A  +F  +  K  DVA WT+M+  +S     + A+ 
Sbjct: 253 GYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVK--DVAAWTLMLTGFSSGRHWDRAIK 310

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
            F +M     L K ++  L   L +C+   AL+ GR++HA  ++  +   I FV + +ID
Sbjct: 311 HFNKMLGIQNL-KLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNI-FVGSAVID 368

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY+  G+++ A+  F  + +++VV W +++ G GM+G G  A   F QM+  GL PD  T
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F+ +LYACSH+GMV +GL+ F  M K        +HYAC++D+LGRA +LD A   I  M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P +P   ++  LL  CRIH N++LG   + ++ E+E    G Y LLSN+YA AG W+ V 
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVK 548

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
             R+ ++   +KK PG S ++  +   TF  G++ HPQ  KI  IL GL+ +IK  GYVP
Sbjct: 549 MTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVP 608

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T+  L DV D+ K D+L+ HSEK+A+A+G++ T PGT IRITKNLR C DCHSA  F+S
Sbjct: 609 NTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVS 668

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +    ++++D+NRFH F++G C+C+ YW
Sbjct: 669 KVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 155/571 (27%), Positives = 248/571 (43%), Gaps = 93/571 (16%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQR 92
           P  +  + +LR+ K L  +  IH QII   LTH     + L+ AYV     + A  +   
Sbjct: 22  PLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHH 81

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
            +P   +V  W  LI    +      A  +F +M    + P+  T   VL A   L   R
Sbjct: 82  -TPCK-NVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIR 139

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
              SVH      GF+ NVFV  AL+ MY++   +  ARQLF+ M +    ++VSWN IV+
Sbjct: 140 IAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSER---NVVSWNAIVS 196

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS--------ACASLGTWSRG----- 259
            Y+  G +E  + LF  M    + +G  V     +S         C  +GT   G     
Sbjct: 197 GYSDHGFSEEAIDLFNLM----RRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT 252

Query: 260 --------KQCGM--------MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
                   K   M        +++A +VF  M VKDV +W  M+TG+S    ++ A   F
Sbjct: 253 GYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHF 312

Query: 304 KKMRQ-ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
            KM   +N+KL                                   + + L+ +LS C+ 
Sbjct: 313 NKMLGIQNLKL-----------------------------------DSIVLMGILSSCSH 337

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
            GAL  G+  H   IK   +      +++ V +A+IDMYA C +++ A+  F  +  K  
Sbjct: 338 SGALQQGRRVHALAIKTCFA------NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-- 389

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           DV  W  MI     NG   DA+ LF QM  +   + P+  T    L AC+    +  G Q
Sbjct: 390 DVVCWNAMIAGNGMNGYGTDAIDLFLQM--KGSGLDPDESTFVSVLYACSHAGMVYEGLQ 447

Query: 483 IHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYG 539
           I  ++++  ++  IP + +  C+ID+  R+G +D A    +N+  Q +   +++L+    
Sbjct: 448 IFYHMVKTSHD--IPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACR 505

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +HG     H    ++ +  + P+   + VLL
Sbjct: 506 IHGNIKLGHEISQKIFE--MEPNDAGYYVLL 534


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/740 (34%), Positives = 389/740 (52%), Gaps = 84/740 (11%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F WN +IR  ++   P  AF L+  M+      D YT+P +++AC    S      VH  
Sbjct: 44  FMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNH 103

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   GFDS+V+V N L+  ++ C  ++ A ++F+E     + D VSWN+I+A Y + G+ 
Sbjct: 104 VLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNE---SSVLDSVSWNSILAGYIEIGNV 160

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E                                             EAK ++ +M  + +
Sbjct: 161 E---------------------------------------------EAKHIYHQMPERSI 175

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           ++ N+M+  +   G   +A  LF +M ++    ++VTWSA+IA + Q     EA+  F  
Sbjct: 176 IASNSMIVLFGMRGLVVEACKLFDEMLEK----DMVTWSALIACFQQNEMYEEAIRTFVG 231

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK---------------------- 378
           M   G+  + V  VS LS CA++  + +GK  H  ++K                      
Sbjct: 232 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGD 291

Query: 379 ----RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
               R L  D ++  DL+  N++I  Y KC  VD A+ +FD++  K  DV +W+ MI  Y
Sbjct: 292 IMVARKL-FDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK--DVVSWSSMISGY 348

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +QN   ++ LALF +M  Q    KP+  TL   + ACARLAAL  G+ +HAY+ RN   +
Sbjct: 349 AQNDLFDETLALFQEM--QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI 406

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +  +   LIDMY + G ++TA  VF  + ++ + +W +L+ G  M+GL + +   F  M
Sbjct: 407 NV-ILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNM 465

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           +K  + P+ +TF+ +L AC H G+VD+G  +F SM  +  I    +HY C+VDLLGRA +
Sbjct: 466 KKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGK 525

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L EA EL+  MPM P    W ALL  C+ H + E+G     +L+EL+ + DG + LLSNI
Sbjct: 526 LQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNI 585

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA+ G+W DV  IR +M    V K PGCS ++       F  GD+THP    I ++L  +
Sbjct: 586 YASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEM 645

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
             ++K  GY P  +  L DVD+EEK   LF HSEKLA+A+G++  +P TPIRI KNLRIC
Sbjct: 646 AMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRIC 705

Query: 795 GDCHSAITFISMIINHEIIL 814
            DCH+A   IS     +I+ 
Sbjct: 706 NDCHTAAKLISKAFCRKIVF 725


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 332/553 (60%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y  +GS + A  +F + R++ +      W+A+    A    G + L ++ QM + G
Sbjct: 115 LINMYCDLGSVDHACKVFDETREKTI----FVWNAIFRALAMASRGEDLLVLYGQMNWIG 170

Query: 346 LEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  N  T   +L  C     S+  L  GKE H + ++        +   + V+  L+D+Y
Sbjct: 171 IPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRH------GYEGHVHVMTTLLDVY 224

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           A+   V  A  +F A+  KN  + +W+ MI  Y++N     AL LF  M  +     PN 
Sbjct: 225 ARFGYVSYASSVFGAMPDKN--IVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNP 282

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  G+ +HAYVLR   +  +P V N LI MY R G+I T + VFD
Sbjct: 283 ITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLP-VLNTLITMYGRCGEISTGQRVFD 341

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +K+R+V+SW SL++ YGMHGLG KA   F+ M   G++P  +TF+ +L ACSH+G+V++
Sbjct: 342 YMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEE 401

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
               F+SM  ++ I  R EHYAC+VD+LGRANRLDEA+ELI+ M  +P P +W +LL  C
Sbjct: 402 AKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSC 461

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A+  L ELE +  G+Y LLS+IYA +  W DV R+R  ++  G++K P 
Sbjct: 462 RIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPS 521

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSW++ K    +    +  +PQ +++   L  L+  IK  GYVPQT+   +D+D+EEK  
Sbjct: 522 CSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKER 581

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HS KLA+A+G++ T+ G  IRI+ NLR+C DCH+ + F+S   N EI+LRD NRFH
Sbjct: 582 IVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFH 641

Query: 822 HFKEGSCTCKGYW 834
            FK+G C+C  YW
Sbjct: 642 CFKDGVCSCGDYW 654



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 41/352 (11%)

Query: 26  IKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSH 80
           ++L      P  K   LL+  C    SL+    +H +++   L   P   + LI  Y   
Sbjct: 63  VQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDL 122

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
            +   A  +         ++F WNA+ R        ++   L+ QM   G   + +T+ +
Sbjct: 123 GSVDHACKVFDETREK--TIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTY 180

Query: 141 VLKACGELPSSRC----GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           VLKAC     S C    G  +HA I   G++ +V V   L+ +YAR   +SYA  +F  M
Sbjct: 181 VLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAM 240

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV-KVQGDGVSLVNALSACASLGT 255
                 +IVSW+ ++A YA++      L LF  M  +      + +++V+ L ACASL  
Sbjct: 241 PDK---NIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAA 297

Query: 256 WSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
              GK                          +CG +   ++VF+ MK +DV+SWN++++ 
Sbjct: 298 LEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISI 357

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           Y   G  + A  +F+ M    V  + +T+  V+   +  G   EA  +F  M
Sbjct: 358 YGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESM 409



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 20/215 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSS 156
           ++  W+A+I    +  +P  A  LF  MM       P+  T   VL+AC  L +   G  
Sbjct: 244 NIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKL 303

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VHA +   G DS + V N L+ MY RC  +S  +++FD M +    D++SWN++++ Y  
Sbjct: 304 VHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKR---DVISWNSLISIYGM 360

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G  +  + +F  M  +  V    ++ +  L AC+           G++EEAK +FE M 
Sbjct: 361 HGLGKKAIQIFENMI-NRGVSPSYITFITVLCACS---------HAGLVEEAKILFESML 410

Query: 277 VKDVV-----SWNAMVTGYSRIGSFEDAFALFKKM 306
            K  +      +  MV    R    ++A  L + M
Sbjct: 411 NKYRIHPRMEHYACMVDILGRANRLDEAIELIQNM 445



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 112/285 (39%), Gaps = 44/285 (15%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P   T    + +C    +L  G  +H  ++ +  +   P++A  LI+MY   G +D A  
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQ-DPYLATKLINMYCDLGSVDHACK 130

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS---- 574
           VFD  +++ +  W ++     M   G+     + QM   G+  +  T+  +L AC     
Sbjct: 131 VFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSEL 190

Query: 575 -----------HSGMVDQGLK-----------------YFDSMSKEFGISARAE--HYAC 604
                      H+ ++  G +                 Y    S  FG         ++ 
Sbjct: 191 SICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSA 250

Query: 605 IVDLLGRANRLDEAVELIEGMPME-----PTPIIWVALLNGCRIHANVELGELAANRLLE 659
           ++    +     +A+EL + M +E     P PI  V++L  C   A +E G+L    +  
Sbjct: 251 MIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYV-- 308

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
           L    D +  +L+ +    GR  +++  + +  +  +KKR   SW
Sbjct: 309 LRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDY--MKKRDVISW 351


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/637 (37%), Positives = 369/637 (57%), Gaps = 25/637 (3%)

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           + D+++WN+++ A+  S      L  +  M    +   D  +  + L  CA L  +  GK
Sbjct: 40  VLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGK 99

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                    +V + M   D+     ++  Y+  G  + A  LF++M   N     V W++
Sbjct: 100 VL-----HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNK----VVWTS 150

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-- 378
           +I+GY +    +EAL ++++M+  G  P+ VT+ +L+S CA +  L +G + H +  +  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 379 -RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
            ++ +V GS         AL++MYAKC  +  AR +FD ++ K  DV  W+ +I  Y +N
Sbjct: 211 MKICAVLGS---------ALVNMYAKCGDLKTARQVFDQLSDK--DVYAWSALIFGYVKN 259

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
             + +AL LF ++     + +PN  T+   + ACA+L  L  GR +H Y+ R Q    + 
Sbjct: 260 NRSTEALQLFREVAGGSNM-RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVS 318

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            + N LIDM+S+ GDID A+ +FD++  ++++SW S++ G  +HGLG +A   F  M+  
Sbjct: 319 -LNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTT 377

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
            L PD +TF+ +L ACSH+G+V +G K F  +   +G+  ++EHY C+VDLL RA  L E
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A E I  MP++P   IW ++L  CR++ N+ELGE AA  LLELE   DG Y LLSNIYA 
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYAR 497

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
              W +V ++R LM   G++K PGCS V       +F  GD +HP+  +I  +L  + ++
Sbjct: 498 RKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREK 557

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +K +GYV  TS  L ++DD +K + + +HSEKLAL YG+L +  G  I I KNLR+C DC
Sbjct: 558 LKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDC 617

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+ I  +S I   +I LRD NRFHHFK+GSC+C+ YW
Sbjct: 618 HTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 225/464 (48%), Gaps = 31/464 (6%)

Query: 60  IIVQNLTHVPPS--HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPD 117
           ++V    H  PS   LIA  +S  +     +           V  WN+++R  V   +P 
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60

Query: 118 NAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
            A + + +M+ R  + PD +TFP +LK C  L   + G  +H  +      S++++   L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MYA C  L  AR LF+ M   G  + V W ++++ Y ++      L+L+ +M  D   
Sbjct: 121 LNMYAACGDLKSARFLFERM---GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEED-GF 176

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGS 295
             D V++   +SACA L      K  G+  +       M +K   V  +A+V  Y++ G 
Sbjct: 177 SPDEVTMATLVSACAEL------KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLV 354
            + A  +F ++  +    +V  WSA+I GY +     EAL +FR++     + PN VT++
Sbjct: 231 LKTARQVFDQLSDK----DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTIL 286

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           +++S CA +G L  G+  H Y  +        H   L   N+LIDM++KC  +D A+ +F
Sbjct: 287 AVISACAQLGDLETGRWVHDYITR----TQKGHSVSLN--NSLIDMFSKCGDIDAAKRIF 340

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D+++ K  D+ +W  M+   + +G   +ALA F  M   D  ++P+  T    L AC+  
Sbjct: 341 DSMSYK--DLISWNSMVNGLALHGLGREALAQFHLMQTTD--LQPDEITFIGVLTACSHA 396

Query: 475 AALRFGRQIHAYVLRNQYEM-LIPFVANCLIDMYSRSGDIDTAR 517
             ++ G+++  Y +   Y + L      C++D+  R+G +  AR
Sbjct: 397 GLVQEGKKLF-YEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAR 439



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 147/315 (46%), Gaps = 38/315 (12%)

Query: 54  YLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           Y++H  + ++       + L+  Y +      A  L +R+      V  W ++I   ++ 
Sbjct: 108 YMLHSDLYIE-------TTLLNMYAACGDLKSARFLFERMGHRNKVV--WTSMISGYMKN 158

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
             P+ A  L+ +M   G+ PDE T   ++ AC EL     G  +H+ I          + 
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           +AL+ MYA+C  L  ARQ+FD++      D+ +W+ ++  Y ++  +   L LF  + G 
Sbjct: 219 SALVNMYAKCGDLKTARQVFDQLSDK---DVYAWSALIFGYVKNNRSTEALQLFREVAGG 275

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMMEE 267
             ++ + V+++  +SACA LG    G+                          +CG ++ 
Sbjct: 276 SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDA 335

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           AK++F+ M  KD++SWN+MV G +  G   +A A F  M+  +++ + +T+  V+   + 
Sbjct: 336 AKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSH 395

Query: 328 RGHGHEALDVFRQMQ 342
            G   E   +F +++
Sbjct: 396 AGLVQEGKKLFYEIE 410


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 399/738 (54%), Gaps = 38/738 (5%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +L+ C     L+Q    H Q++V  + +  +  + L+  YV   A   A ++  ++    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR--- 108

Query: 98  FSVFW----WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
               W    WN +IR    +   D A   + +M+  G  PD+YTFP+V+KACG L S   
Sbjct: 109 ---LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVAL 165

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VH  I   GF+ +VFV ++L+  Y+    +  AR LFD M      D V WN ++  
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK---DGVLWNVMLNG 222

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           Y ++GD +    +F  M    +   + V+    LS CAS    + G Q   +  +  +  
Sbjct: 223 YVKNGDWDNATGVFMEMR-RTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEM 281

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
              V +     A++  Y +    E A    +K+  +   +++V  +A+I+GY   G  + 
Sbjct: 282 DSPVANTF---ALIDIYFKCRDVEMA----RKIFDQRTPVDIVVCTAMISGYVLNGMNNN 334

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           AL++FR +    +  N VTL S+L  CA + AL LGKE H + +K        H     V
Sbjct: 335 ALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN------GHGGSCYV 388

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            +A++DMYAKC  +D+A   F  I+ K  D   W  MI S SQNG   +A+ LF QM   
Sbjct: 389 GSAIMDMYAKCGRLDLAHQTFIGISDK--DAVCWNSMITSCSQNGKPEEAIDLFRQMGMA 446

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
               K +  ++S AL ACA L AL +G++IHA+++R  +   + F  + LIDMYS+ G++
Sbjct: 447 G--TKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDL-FAESALIDMYSKCGNL 503

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D A  VFD ++++N VSW S++  YG HG    +   F  M  +G+ PD VTFL ++ AC
Sbjct: 504 DLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISAC 563

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
            H+G VD+G+ YF  M++E GI AR EHYAC+VDL GRA RL+EA  +I  MP  P   +
Sbjct: 564 GHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGV 623

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W  LL  CR+H NVEL E+A+  L +L+ +  G Y LLSN++ANAG+W+ V +IRSLMK 
Sbjct: 624 WGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKE 683

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH- 752
            GV+K PGCSW+     T  F   DR+HPQS +IY +L  L   ++  GYVPQ    +H 
Sbjct: 684 RGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYVPQLYLPMHP 743

Query: 753 DVDDEEKGDLLFEHSEKL 770
                  G + + HS K+
Sbjct: 744 QTMGLHNGRISYYHSSKI 761


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/739 (34%), Positives = 384/739 (51%), Gaps = 60/739 (8%)

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD--TL 186
           + + P  +    +L+ C  +   +    VH      G ++N  + N +M      +    
Sbjct: 33  KSFSPPTHPLISLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDF 89

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
            YAR+LFDE+ +P   ++  WNT++  Y++    + G+ L+  M     V+ D  +    
Sbjct: 90  QYARRLFDEIPEP---NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRR-GVKPDRYTFPFL 145

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                       G+Q         V +     +V    A+V  Y   G  + A  +F   
Sbjct: 146 FKGFTRDIALEYGRQL-----HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 200

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                K +V+TW+ +I+ Y + G   E+  +F  M+   + P  VTLV +LS C+ +  L
Sbjct: 201 ----PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDL 256

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS-------------------- 406
             GK+ H Y   +   V+     +L++ NA+IDMYA C                      
Sbjct: 257 RTGKKVHSYV--KNCKVES----NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 310

Query: 407 -----------VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                      +DVAR  FD +  K  D  +WT MI  Y ++    +AL LF  M  Q  
Sbjct: 311 TIVSGFTNLGEIDVARNYFDKMPEK--DYVSWTAMIDGYIRSNRFKEALELFRNM--QAT 366

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            VKP+ FT+   L ACA L AL  G  I  Y+ RN+ +  + FV N LIDMY + GD+D 
Sbjct: 367 NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDL-FVRNALIDMYFKCGDVDK 425

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A  +F  + QR+  +WT+++ G  ++G G+KA   F  M K  + PD +T++ +L AC+H
Sbjct: 426 AESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 485

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +G+VD+G KYF  M+ + GI     HY C+VDLL RA RL EA E+IE MP++   I+W 
Sbjct: 486 TGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 545

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL GCR++   ++ E+   ++LELE +    Y LL NIYA   RW D+  +R +M   G
Sbjct: 546 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKG 605

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCS ++       F  GDR+HPQ++ I   L  + Q +K  GY P  S    D+ 
Sbjct: 606 IKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIA 665

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +E+K + +F HSEKLA+A+G++ + PG  IRITKNLR+C DCH+    +S + N E+I+R
Sbjct: 666 EEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVR 725

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D  RFHHFK G C+CK YW
Sbjct: 726 DRTRFHHFKHGLCSCKDYW 744



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 200/622 (32%), Positives = 296/622 (47%), Gaps = 81/622 (13%)

Query: 12  KSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP-- 69
           K K   T+    + +K FS  T P I     LL  C+S+ Q+  +H Q I + L   P  
Sbjct: 18  KPKQMTTIAATSSALKSFSPPTHPLIS----LLETCESMDQLQQVHCQAIKKGLNANPVL 73

Query: 70  PSHLIAAYVSHNAPS--PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
            + ++    +H       A  L   I P P ++F WN +IR   RL  P     L+L+M+
Sbjct: 74  QNRVMTFCCTHEYGDFQYARRLFDEI-PEP-NLFIWNTMIRGYSRLDFPQLGVSLYLEML 131

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           RRG  PD YTFPF+ K      +   G  +H  +   G   NVFV  AL+ MY  C  L 
Sbjct: 132 RRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLD 191

Query: 188 YARQLFDEMFQPGIC---DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            AR +FD      +C   D+++WN I++AY + G  E    LF  M  D +V    V+LV
Sbjct: 192 TARGVFD------VCPKADVITWNMIISAYNKVGKFEESRRLFLVME-DKQVLPTTVTLV 244

Query: 245 NALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVK 278
             LSAC+ L     GK+                          CG M+ A  +F  M  +
Sbjct: 245 LVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 304

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D++SW  +V+G++ +G  + A   F KM ++    + V+W+A+I GY +     EAL++F
Sbjct: 305 DIISWTTIVSGFTNLGEIDVARNYFDKMPEK----DYVSWTAMIDGYIRSNRFKEALELF 360

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R MQ   ++P+  T+VS+L+ CA +GAL LG+    Y  +  +       +DL V NALI
Sbjct: 361 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIK------NDLFVRNALI 414

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY KC  VD A  +F  ++   RD  TWT MI   + NG    AL +F  M +   L  
Sbjct: 415 DMYFKCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL-- 470

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVAN--CLIDMYSRSGDIDT 515
           P+  T    L AC     +  GR+   Y LR   +  I P +A+  CL+D+ +R+G +  
Sbjct: 471 PDEITYIGVLSACTHTGLVDKGRK---YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKE 527

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL---- 570
           A  V +N+  + N + W +L+ G  ++   D A     Q+ +  L PD     VLL    
Sbjct: 528 AYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVYVLLCNIY 585

Query: 571 YACS--------HSGMVDQGLK 584
            AC            M+D+G+K
Sbjct: 586 AACKRWNDLRELRQMMMDKGIK 607


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/679 (35%), Positives = 388/679 (57%), Gaps = 58/679 (8%)

Query: 157 VHAVICSSGFDSNVFVCNALMA---MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           +HA +  +G  +  +  + L+    +    D L YA  +F+ + +P   +++ WNT+   
Sbjct: 9   IHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEP---NLLIWNTMFRG 65

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------- 262
           +A S D    L L+  M   + +  +  +    L +CA    +  G+Q            
Sbjct: 66  HALSSDPVSALKLYVCMIS-LGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDL 124

Query: 263 ---------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                          G +E+A KVF+    +DVVS+ A++ GY+  G  E+A    +KM 
Sbjct: 125 DLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENA----QKMF 180

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            E    +VV+W+A+I+GYA+ G+  EAL++F+ M    + P+  T+V+++S CA  G++ 
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG++ H +        D     +L ++NALID+Y+KC  ++ A  +F+ +  K  DV +W
Sbjct: 241 LGRQVHSWI------DDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK--DVISW 292

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             +IG Y+      +AL LF +M +  +   PN  T+   L ACA L A+  GR IH Y+
Sbjct: 293 NTLIGGYTHMNLYKEALLLFQEMLRSGE--TPNDVTMLSILPACAHLGAIDIGRWIHVYI 350

Query: 488 LRNQYEMLIPFVANC------LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            +      +  VAN       LIDMY++ GDI+ A  VF+++  +++ SW +++ G+ MH
Sbjct: 351 DKR-----LKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 405

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G  D +   F +MRK G+ PD +TF+ LL ACSHSGM+D G   F SM++++ ++ + EH
Sbjct: 406 GRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEH 465

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           Y C++DLLG +    EA E+I  M MEP  +IW +LL  C++H NVELGE  A  L+++E
Sbjct: 466 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIE 525

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            E  GSY LLSNIYA AGRW +VA  R+L+   G+KK PGCS ++       F +GD+ H
Sbjct: 526 PENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 585

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P++++IY +L  +   ++  G+VP TS  L ++++E K   L  HSEKLA+A+G+++T P
Sbjct: 586 PRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 645

Query: 782 GTPIRITKNLRICGDCHSA 800
           GT + I KNLR+C +CH A
Sbjct: 646 GTKLTIVKNLRVCRNCHEA 664



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 158/564 (28%), Positives = 278/564 (49%), Gaps = 63/564 (11%)

Query: 50  LTQVYLIHQQIIVQNL--THVPPSHLIAAYV--SHNAPSP-ALSLLQRISPSPFSVFWWN 104
           L  + +IH Q+I   L  T+   S LI   +   H    P A+S+ + I     ++  WN
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEP--NLLIWN 60

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
            + R       P +A +L++ M+  G  P+ YTFPF+LK+C +  + + G  +H  +   
Sbjct: 61  TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDE---------------------------MF 197
           G D +++V  +L++MY +   L  A ++FDE                           MF
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 198 -QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            +  + D+VSWN +++ YA++G+ +  L LF  M     V+ D  ++V  +SACA  G+ 
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVTVVSACAQSGSI 239

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
             G+Q     +       +K+      NA++  YS+ G  E A  LF+ +  ++V    +
Sbjct: 240 ELGRQVHSWIDDHGFGSNLKIV-----NALIDLYSKCGELETACGLFEGLPYKDV----I 290

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+ +I GY       EAL +F++M   G  PN VT++S+L  CA +GA+ +G+  H Y 
Sbjct: 291 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 350

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            KR+  V  +      +  +LIDMYAKC  ++ A  +F++I  K+  +++W  MI  ++ 
Sbjct: 351 DKRLKGVANASS----LRTSLIDMYAKCGDIEAAHQVFNSILHKS--LSSWNAMIFGFAM 404

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G A+ +  +F +M +    ++P+  T    L AC+    L  GR I   + ++ Y+M  
Sbjct: 405 HGRADASFDIFSRMRKNG--IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD-YKM-T 460

Query: 497 PFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWA 550
           P + +  C+ID+   SG    A  + + ++ + + V W SL+    MHG   LG+   +A
Sbjct: 461 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGES--FA 518

Query: 551 FDQMRKEGLAPDGVTFLVLLYACS 574
            + ++ E   P     L  +YA +
Sbjct: 519 QNLIKIEPENPGSYVLLSNIYATA 542


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/738 (36%), Positives = 398/738 (53%), Gaps = 34/738 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNAL+       L   +FR+F  M R G    D  T   ++  C        GS VH++ 
Sbjct: 214 WNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLC 273

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +G  S + V NAL+ MY+    L+ A  LF  M +    D++SWNT++++Y Q+G+  
Sbjct: 274 LRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRR---DLISWNTMISSYVQNGNNM 330

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L    ++        D ++  +AL AC+S G    G+    M     +   + V    
Sbjct: 331 DALKTLGQLL-HTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVG--- 386

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             N+++T Y +  S EDA  +F+ M   +V    V+ + +I  YA    G +A+ VF  M
Sbjct: 387 --NSLITMYGKCNSIEDAERIFQLMPNHDV----VSCNILIGSYAVLEDGTKAMQVFFWM 440

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +   ++ N +T+V++L    S   L   G   H YTI       G   DD  V N+LI M
Sbjct: 441 RRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHA-----GFLSDDY-VSNSLITM 494

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC  ++ +  +F  I   NR V +W  MI +  Q+G   ++L LF  M      +  +
Sbjct: 495 YAKCGDLESSNNVFQRII--NRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGL--D 550

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLR----NQYEMLIPFVANCLIDMYSRSGDIDTA 516
              L+  + + A LA+L  G Q+H   L+    N        V N  +DMY + G +D  
Sbjct: 551 HICLAECMSSSASLASLEEGMQLHGLGLKCGLGND-----SHVVNAAMDMYGKCGKMDEM 605

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +  +   R    W +L++GY  +G   +A   F  M   G  PD VTF+ LL ACSH+
Sbjct: 606 LKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSACSHA 665

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+VD+G+ Y++SMS  FG+S   +H  CIVD+LGR  R  EA + IE MP+ P  +IW +
Sbjct: 666 GLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAEKFIEDMPVLPNDLIWRS 725

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+  R H N+++G  AA RLLEL+   D +Y LLSN+YA + RW DV R+RS MK   +
Sbjct: 726 LLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYATSARWSDVDRVRSHMKTINL 785

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
            K P CSW++ K+  +TF +GD +H  + KIY  L  ++ +++ +GYV  TS ALHD D+
Sbjct: 786 NKIPACSWLKQKKEVSTFGIGDHSHKHADKIYMKLDEILLKLREVGYVADTSSALHDTDE 845

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           E+K   L+ HSEKLALAYG++T   G  +RI KNLR+C DCH     +SM+ + EI+LRD
Sbjct: 846 EQKEQNLWNHSEKLALAYGLITVPEGCTVRIFKNLRVCADCHLVFKLVSMVFDREIVLRD 905

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHFK GSC+C  +W
Sbjct: 906 PYRFHHFKGGSCSCSDFW 923



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 212/495 (42%), Gaps = 76/495 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR-CGSSVHAVI 161
           W   I   VR      AF +   M  RG     +    ++ AC      R CG+++HA+ 
Sbjct: 11  WYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHALT 70

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +G   NV++  AL+ +Y     +  A++LF EM +    ++VSW  ++ A + +G  E
Sbjct: 71  QKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPER---NVVSWTALMVALSSNGHLE 127

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------------------- 262
             L  + RM  + ++  +  +    +S C SL     G Q                    
Sbjct: 128 EALGYYRRMRRE-RIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSL 186

Query: 263 -------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                  G + +A+K+F RM+ +D VSWNA+V+ YS  G    +F +F  MR+  +    
Sbjct: 187 ISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGL---- 242

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
                                         L  +  TL SL+S CAS   +  G   H  
Sbjct: 243 ------------------------------LRHDATTLCSLISVCASSDYVSYGSGVHSL 272

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            ++      G H   + V+NAL++MY+    +  A  +F  ++   RD+ +W  MI SY 
Sbjct: 273 CLR-----TGLHS-YIPVVNALVNMYSSAGKLADAEFLFWNMS--RRDLISWNTMISSYV 324

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG   DAL    Q+   ++   P+  T S AL AC+   AL  GR +HA  L+      
Sbjct: 325 QNGNNMDALKTLGQLLHTNE--GPDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHN 382

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  V N LI MY +   I+ A  +F  +   +VVS   L+  Y +   G KA   F  MR
Sbjct: 383 L-LVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMR 441

Query: 556 KEGLAPDGVTFLVLL 570
           +  +  + +T + +L
Sbjct: 442 RGEVKLNYITIVNIL 456



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 192/422 (45%), Gaps = 22/422 (5%)

Query: 206 SWNTIVAAYAQSG-DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           SW T ++   + G D+    ML  R   +  V   G +L + ++AC     W  G+ CG 
Sbjct: 10  SWYTAISGCVRCGRDSTAFSML--RGMRERGVPLSGFALASLVTACER---WEEGRACGA 64

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
              A      + V +V    A++  Y       DA  LF +M + NV    V+W+A++  
Sbjct: 65  AIHALTQKAGLMV-NVYIGTALLHLYGSQKHVLDAQRLFWEMPERNV----VSWTALMVA 119

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            +  GH  EAL  +R+M+   +  N     +++S C S+   + G +   + I   L   
Sbjct: 120 LSSNGHLEEALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQ 179

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            S      V N+LI M      V  A  +F  +  + RD  +W  ++  YS  G  + + 
Sbjct: 180 VS------VANSLISMLGNLGRVHDAEKLFYRM--EERDTVSWNALVSMYSHEGLCSKSF 231

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            +F  M ++  L++ +A TL   +  CA    + +G  +H+  LR      IP V N L+
Sbjct: 232 RVFSDM-RRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIP-VVNALV 289

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           +MYS +G +  A  +F N+ +R+++SW ++++ Y  +G    A     Q+      PD +
Sbjct: 290 NMYSSAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRM 349

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF   L ACS  G +  G +   +M+ +  +         ++ + G+ N +++A  + + 
Sbjct: 350 TFSSALGACSSPGALMDG-RMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQL 408

Query: 625 MP 626
           MP
Sbjct: 409 MP 410



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 20/343 (5%)

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS-VGALLLGKETHCY 375
           +W   I+G  + G    A  + R M+  G+  +   L SL++ C         G   H  
Sbjct: 10  SWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHAL 69

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
           T K  L V+      + +  AL+ +Y   K V  A+ +F  +  +N  V +WT ++ + S
Sbjct: 70  TQKAGLMVN------VYIGTALLHLYGSQKHVLDAQRLFWEMPERN--VVSWTALMVALS 121

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            NG   +AL  + +M ++      NAF    +L  C  L     G Q+ ++V+ +  +  
Sbjct: 122 SNGHLEEALGYYRRMRRERIACNANAFATVVSL--CGSLEDEVAGLQVFSHVIVSGLQRQ 179

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  VAN LI M    G +  A  +F  +++R+ VSW +L++ Y   GL  K+   F  MR
Sbjct: 180 VS-VANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMR 238

Query: 556 KEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           + G L  D  T   L+  C+ S  V  G     S+    G+ +       +V++   A +
Sbjct: 239 RGGLLRHDATTLCSLISVCASSDYVSYG-SGVHSLCLRTGLHSYIPVVNALVNMYSSAGK 297

Query: 615 LDEAVELIEGMPMEPTPIIWVALL-----NGCRIHANVELGEL 652
           L +A  L   M      I W  ++     NG  + A   LG+L
Sbjct: 298 LADAEFLFWNMSRRDL-ISWNTMISSYVQNGNNMDALKTLGQL 339



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 24/291 (8%)

Query: 52  QVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAV 111
             Y IH   +  +      + LI  Y        + ++ QRI     SV  WNA+I   V
Sbjct: 473 HAYTIHAGFLSDDYV---SNSLITMYAKCGDLESSNNVFQRIINR--SVVSWNAMIAANV 527

Query: 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF 171
           +    + + +LF+ M   G   D       + +   L S   G  +H +    G  ++  
Sbjct: 528 QHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSH 587

Query: 172 VCNALMAMYARCDTL-SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           V NA M MY +C  +    + L D   +P  C    WNT+++ YA+ G  +     F  M
Sbjct: 588 VVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQC----WNTLISGYARYGYFKEAEETFKHM 643

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE-RMKVKDVVSWNAMVTG 289
              V    D V+ V  LSAC+  G   +G           VF     +K  V    +V  
Sbjct: 644 IS-VGRTPDYVTFVTLLSACSHAGLVDKGID--YYNSMSSVFGVSPGIKHCV---CIVDI 697

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
             R+G F +A    + M    V  N + W ++++        H+ LD+ R+
Sbjct: 698 LGRLGRFAEAEKFIEDM---PVLPNDLIWRSLLSS----SRTHKNLDIGRK 741


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/693 (36%), Positives = 382/693 (55%), Gaps = 23/693 (3%)

Query: 145 CGELPSSRCGSSVHA---VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           C ++     G ++HA   +   +   S++   N+L+ +Y +C  L  AR LFD M    +
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAM---PL 78

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            ++VSWN ++A Y   G+    L+LF  M        +      ALSAC+  G    G Q
Sbjct: 79  RNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQ 138

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           C  +     +     VK     +A+V  YSR    E A  +   +  E+V  ++ ++++V
Sbjct: 139 CHGLLFKFGLVCHQYVK-----SALVHMYSRCSHVELALQVLDTVPGEHVN-DIFSYNSV 192

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           +    + G G EA++V R+M    +  + VT V ++  CA +  L LG   H   ++  L
Sbjct: 193 LNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGL 252

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             D        V + LIDMY KC  V  AR +FD +  +NR+V  WT ++ +Y QNG   
Sbjct: 253 MFDE------FVGSMLIDMYGKCGEVLNARNVFDGL--QNRNVVVWTALMTAYLQNGYFE 304

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           ++L LF  M ++  L  PN +T +  L ACA +AALR G  +HA V +  ++  +  V N
Sbjct: 305 ESLNLFTCMDREGTL--PNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHV-IVRN 361

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI+MYS+SG ID++  VF ++  R++++W +++ GY  HGLG +A   F  M      P
Sbjct: 362 ALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECP 421

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + VTF+ +L A SH G+V +G  Y + + + F I    EHY C+V LL RA  LDEA   
Sbjct: 422 NYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENF 481

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           ++   ++   + W  LLN C +H N +LG   A  +L+++    G+YTLLSN+YA A RW
Sbjct: 482 MKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRW 541

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
             V  IR LM+   +KK PG SW+  +     F      HP+S +IY+ +  L+  IK +
Sbjct: 542 DGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPL 601

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GYVP  +  LHDV+DE+K   L  HSEKLALAYG++      PIRI KNLR+C DCH+A+
Sbjct: 602 GYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAV 661

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             IS + N  II+RD+NRFHHF++GSCTC  +W
Sbjct: 662 KLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 226/494 (45%), Gaps = 31/494 (6%)

Query: 56  IHQQIIVQNLT--HVPPSHL---IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRA 110
           +H Q +++N T  H   SHL   +  YV       A +L   +     +V  WN L+   
Sbjct: 34  MHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLR--NVVSWNVLMAGY 91

Query: 111 VRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
           +          LF  M+  +   P+EY F   L AC      + G   H ++   G   +
Sbjct: 92  LHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH 151

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
            +V +AL+ MY+RC  +  A Q+ D +    + DI S+N+++ A  +SG  E  + +  R
Sbjct: 152 QYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRR 211

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
           M  D  V  D V+ V  +  CA +    R  Q G+   A+ +   +   + V  + ++  
Sbjct: 212 MV-DECVAWDHVTYVGVMGLCAQI----RDLQLGLRVHARLLRGGLMFDEFVG-SMLIDM 265

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y + G   +A  +F  ++  N    VV W+A++  Y Q G+  E+L++F  M   G  PN
Sbjct: 266 YGKCGEVLNARNVFDGLQNRN----VVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPN 321

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             T   LL+ CA + AL  G   H    K          + ++V NALI+MY+K  S+D 
Sbjct: 322 EYTFAVLLNACAGIAALRHGDLLHARVEKL------GFKNHVIVRNALINMYSKSGSIDS 375

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +  +F  +    RD+ TW  MI  YS +G    AL +F  M   ++   PN  T    L 
Sbjct: 376 SYNVFTDMIY--RDIITWNAMICGYSHHGLGKQALQVFQDMVSAEEC--PNYVTFIGVLS 431

Query: 470 ACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-N 527
           A + L  ++ G     +++RN + E  +     C++ + SR+G +D A       + + +
Sbjct: 432 AYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYT-CMVALLSRAGLLDEAENFMKTTQVKWD 490

Query: 528 VVSWTSLMTGYGMH 541
           VV+W +L+    +H
Sbjct: 491 VVAWRTLLNACHVH 504



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 19/263 (7%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   ++    + +  LF  M R G  P+EYTF  +L AC  + + R G  +H
Sbjct: 286 NVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLH 345

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +   GF ++V V NAL+ MY++  ++  +  +F +M      DI++WN ++  Y+  G
Sbjct: 346 ARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR---DIITWNAMICGYSHHG 402

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
             +  L +F  M    +   + V+ +  LSA + LG    G           +    K++
Sbjct: 403 LGKQALQVFQDMVSAEECP-NYVTFIGVLSAYSHLGLVKEG-----FYYLNHLMRNFKIE 456

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +  +  MV   SR G  ++A      M+   VK +VV W  ++       H H   D+
Sbjct: 457 PGLEHYTCMVALLSRAGLLDEAENF---MKTTQVKWDVVAWRTLLNA----CHVHRNYDL 509

Query: 338 FRQM--QFCGLEPNVVTLVSLLS 358
            R++      ++P+ V   +LLS
Sbjct: 510 GRRIAESVLQMDPHDVGTYTLLS 532


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/532 (43%), Positives = 321/532 (60%), Gaps = 40/532 (7%)

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L+ + +M F GL  +  TL  +L  CA +  + +G+  H   ++  + ++G    D  V 
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR--VGLEG----DFYVG 145

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVA 425
            +LIDMY KC  +  AR +FD +  ++                             R++ 
Sbjct: 146 ASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIV 205

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +WT MI  Y+QNG A  AL LF +M Q    +KPN  T+   L ACA+ AAL  GR+IH 
Sbjct: 206 SWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 265

Query: 486 YVLRNQYEM-LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHG 542
           +   N   + L   V   L  MY++   +  AR  FD + Q  +N+++W +++T Y  HG
Sbjct: 266 FA--NGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHG 323

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
            G +A   F+ M + G+ PD VTF+ LL  CSHSG++D GL +F+ M     +  R EHY
Sbjct: 324 CGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHY 383

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
           AC+VDLLGRA RL EA ELI  MPM+  P +W ALL  CR H N+E+ ELAA RL  LE 
Sbjct: 384 ACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEP 443

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHP 722
           +  G+Y LLSN+YA AG W++V ++R+L+K+ G+KK PGCSW++    +  F   D++HP
Sbjct: 444 DNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHP 503

Query: 723 QSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           Q+++IY+ L  L ++IK  GY+P TSF LHD+ +EEK   L  HSEKLA+A+G+L T PG
Sbjct: 504 QAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPG 563

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             +R+TKNLRICGDCH+A  FIS I   EII+RD NRFH FK+GSC+C  YW
Sbjct: 564 VVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 19/286 (6%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG++ +A+K+F++M V+D+ SWNA++ GY + G    A  LF++M       N+V+W+A
Sbjct: 154 KCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHR----NIVSWTA 209

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +I+GY Q G   +AL +F +M   G  ++PN VT+VS+L  CA   AL  G+  H +   
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             L ++ S      V  AL  MYAKC S+  AR  FD IA   +++  W  MI +Y+ +G
Sbjct: 270 IGLHLNSS------VQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHG 323

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +A+++F  M +    V+P+A T    L  C+    +  G  ++ +        + P 
Sbjct: 324 CGVEAVSIFENMLRAG--VQPDAVTFMGLLSGCSHSGLIDAG--LNHFNDMGTIHSVEPR 379

Query: 499 VAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           V +  C++D+  R+G +  A+ +   +  Q     W +L+     H
Sbjct: 380 VEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSH 425



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 127/276 (46%), Gaps = 36/276 (13%)

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
           + +M   G   D +T PFVLK+C +L     G  VH      G + + +V  +L+ MY +
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154

Query: 183 CDTLSYARQLFDEMF------------------QPGICD----------IVSWNTIVAAY 214
           C  +  AR+LFD+M                   + G+ +          IVSW  +++ Y
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 215 AQSGDAEGGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
            Q+G AE  L LF  M  D  +++ + V++V+ L ACA      RG++         +  
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
              V+      A+   Y++  S  +A   F  + Q     N++ W+ +I  YA  G G E
Sbjct: 275 NSSVQ-----TALAGMYAKCYSLVEARCCFDMIAQNGK--NLIAWNTMITAYASHGCGVE 327

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           A+ +F  M   G++P+ VT + LLSGC+  G +  G
Sbjct: 328 AVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 363



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C  +     +  ++IV+++     + LIA Y+       A  L +R+     ++  W A
Sbjct: 154 KCGVIGDARKLFDKMIVRDMASW--NALIAGYMKEGEIGVAEDLFERMEHR--NIVSWTA 209

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           +I    +    + A  LF +M++ G    P+  T   VL AC +  +   G  +H     
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
            G   N  V  AL  MYA+C +L  AR  FD + Q G  ++++WNT++ AYA  G     
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGK-NLIAWNTMITAYASHGCGVEA 328

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
           + +F  M     VQ D V+ +  LS C+  G    G
Sbjct: 329 VSIFENML-RAGVQPDAVTFMGLLSGCSHSGLIDAG 363


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/689 (36%), Positives = 386/689 (56%), Gaps = 45/689 (6%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA I +SG   N F+ N+LM  Y  C  L+ A+Q+F         ++VSW  +++  A+
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFH---HTPYKNVVSWTILISGLAK 99

Query: 217 SGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGT----------WSRGKQCGMM 265
           +      + +F  M  G+ K   + V++ + L A A+LG           W RG   G  
Sbjct: 100 NDCFVEAIDVFREMIMGNFK--PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEG-- 155

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                        +V    A+V  YS+ G    A  LF+ M + NV    VTW+A+++GY
Sbjct: 156 -------------NVFVETALVDMYSKFGCMGVARQLFESMSERNV----VTWNAIVSGY 198

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           +  G   EA+D+F  M+  GL  +  T++SL+    SVG L +G   H + I+       
Sbjct: 199 SDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT------ 252

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
            + +D  +  AL+D+Y     VD A  +F  ++ K  DVA WT+M+  +S     + A+ 
Sbjct: 253 GYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVK--DVAAWTLMLTGFSSGRHWDRAIK 310

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
            F +M     L K ++  L   L +C+   AL+ GR++HA  ++  +   I FV + +ID
Sbjct: 311 HFNKMLGIQNL-KLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNI-FVGSAVID 368

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY+  G+++ A+  F  + +++VV W +++ G GM+G G  A   F QM+  GL PD  T
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F+ +LYACSH+GMV +GL+ F  M K   +    +HYAC++D+LGRA +LD A   I  M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P +P   ++  LL  CRIH N++LG   + ++ E+E    G Y LLSN+YA AG W+ V 
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVK 548

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
             R+ ++   +KK PG S ++  +   TF  G++ HPQ  KI  IL GL+ +IK  GYVP
Sbjct: 549 MTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVP 608

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T+  L DV D+ K D+L+ HSEK+A+A+G++ T P T IRITKNLR C DCH+A  F+S
Sbjct: 609 NTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVS 668

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +    ++++D+NRFH F++G C+C+ YW
Sbjct: 669 KVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 154/573 (26%), Positives = 251/573 (43%), Gaps = 95/573 (16%)

Query: 34  TPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQ 91
           +P  +  + +LR+ K L  +  IH QII   LTH     + L+ AYV     + A  +  
Sbjct: 21  SPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFH 80

Query: 92  RISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
               +P+ +V  W  LI    +      A  +F +M+   + P+  T   VL A   L  
Sbjct: 81  H---TPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGL 137

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
            R   SVH      GF+ NVFV  AL+ MY++   +  ARQLF+ M +    ++V+WN I
Sbjct: 138 IRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSER---NVVTWNAI 194

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS--------ACASLGTWSRG--- 259
           V+ Y+  G +E  + LF  M    + +G  V     +S         C  +GT   G   
Sbjct: 195 VSGYSDHGFSEEAIDLFNLM----RRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFII 250

Query: 260 ----------KQCGM--------MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
                     K   M        +++A +VF  M VKDV +W  M+TG+S    ++ A  
Sbjct: 251 RTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIK 310

Query: 302 LFKKMRQ-ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            F KM   +N+KL                                   + + L+ +LS C
Sbjct: 311 HFNKMLGIQNLKL-----------------------------------DSIALMGILSSC 335

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           +  GAL  G+  H   IK   +      +++ V +A+IDMYA C +++ A+  F  +  K
Sbjct: 336 SHSGALQQGRRVHALAIKTCFA------NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK 389

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
             DV  W  MI     NG   DA+ LF QM  +   + P+  T    L AC+    +  G
Sbjct: 390 --DVVCWNAMIAGNGMNGYGTDAIDLFLQM--KGSGLDPDESTFVSVLYACSHAGMVYEG 445

Query: 481 RQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG 537
            QI  ++++  +  +IP + +  C+ID+  R+G +D A    +N+  Q +   +++L+  
Sbjct: 446 LQIFYHMVKTSH--VIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGA 503

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
             +HG     H    ++ +  + P+   + VLL
Sbjct: 504 CRIHGNIKLGHEISQKIFE--MEPNDAGYYVLL 534


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/732 (34%), Positives = 410/732 (56%), Gaps = 45/732 (6%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-FDSNVFVCNAL 176
           +A ++F++ +  G  P++Y +  V++AC        G      +  +G F+S+V V  +L
Sbjct: 149 DAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSL 208

Query: 177 MAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           + M+ + + +   A ++FD+M +    ++V+W  ++    Q G     +  F  M     
Sbjct: 209 IDMFVKGENSFENAYKVFDKMSE---LNVVTWTLMITRCMQMGFPREAIRFFLDMVLS-G 264

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
            + D  +L +  SACA L   S GKQ        G++++ +            S   M  
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE-----------CSLVDMYA 313

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFCG-L 346
             S  GS +D   +F +M   +V    ++W+A+I GY +  +   EA+++F +M   G +
Sbjct: 314 KCSADGSVDDCRKVFDRMEDHSV----MSWTALITGYMKNCNLATEAINLFSEMITQGHV 369

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
           EPN  T  S    C ++    +GK+      KR L+ + S      V N++I M+ K   
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS------VANSVISMFVKSDR 423

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           ++ A+  F++++ KN  + ++   +    +N     A  L  ++ +++  V  +AFT + 
Sbjct: 424 MEDAQRAFESLSEKN--LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGV--SAFTFAS 479

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L   A + ++R G QIH+ V++       P V N LI MYS+ G IDTA  VF+ ++ R
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVKLGLSCNQP-VCNALISMYSKCGSIDTASRVFNFMENR 538

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NV+SWTS++TG+  HG   +    F+QM +EG+ P+ VT++ +L ACSH G+V +G ++F
Sbjct: 539 NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHF 598

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           +SM ++  I  + EHYAC+VDLL RA  L +A E I  MP +   ++W   L  CR+H+N
Sbjct: 599 NSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSN 658

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
            ELG+LAA ++LEL+  +  +Y  LSNIYA AG+W++   +R  MK   + K  GCSW++
Sbjct: 659 TELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIE 718

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD----L 762
             +    F+VGD  HP + +IY+ L  L+  IK  GYVP T   LH +++E        L
Sbjct: 719 VGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERL 778

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L++HSEK+A+A+G+++T+   P+R+ KNLR+CGDCH+A+ +IS +   EI+LRD NRFHH
Sbjct: 779 LYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHH 838

Query: 823 FKEGSCTCKGYW 834
           FK+G C+C  YW
Sbjct: 839 FKDGKCSCNDYW 850



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 153/576 (26%), Positives = 262/576 (45%), Gaps = 29/576 (5%)

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP-D 134
           A +S + PSPA   ++        +   + LI R +       A      M R G  P D
Sbjct: 2   AMISFSFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMD 61

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
             TF  +LK+C      R G  VHA +     + +  + N+L+++Y++    + A  +F+
Sbjct: 62  SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
            M + G  D+VSW+ ++A Y  +G     + +F     ++ +  +       + AC++  
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFL-ELGLVPNDYCYTAVIRACSNSD 180

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVKL 313
               G+           FE     DV    +++  + +   SFE+A+ +F KM +    L
Sbjct: 181 FVGVGRVTLGFLMKTGHFE----SDVCVGCSLIDMFVKGENSFENAYKVFDKMSE----L 232

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           NVVTW+ +I    Q G   EA+  F  M   G E +  TL S+ S CA +  L LGK+ H
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLH 292

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCK---SVDVARVMFDAIAPKNRDVATWTVM 430
            + I+  L  D        V  +L+DMYAKC    SVD  R +FD +  ++  V +WT +
Sbjct: 293 SWAIRSGLVDD--------VECSLVDMYAKCSADGSVDDCRKVFDRM--EDHSVMSWTAL 342

Query: 431 IGSYSQNGG-ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           I  Y +N   A +A+ LF +M  Q   V+PN FT S A  AC  L+  R G+Q+     +
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGH-VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK 401

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
                    VAN +I M+ +S  ++ A+  F++L ++N+VS+ + + G   +   ++A  
Sbjct: 402 RGLASNSS-VANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
              ++ +  L     TF  LL   ++ G + +G +    + K  G+S        ++ + 
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVK-LGLSCNQPVCNALISMY 519

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
            +   +D A  +   M      I W +++ G   H 
Sbjct: 520 SKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHG 554



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 218/478 (45%), Gaps = 83/478 (17%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S  +V  W  +I R +++  P  A R FL M+  G+  D++T   V  AC EL +   G 
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGK 289

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCD---TLSYARQLFDEMFQPGICDIVSWNTIVA 212
            +H+    SG   +V    +L+ MYA+C    ++   R++FD M       ++SW  ++ 
Sbjct: 290 QLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHS---VMSWTALIT 344

Query: 213 AYAQSGD-AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC--------- 262
            Y ++ + A   + LF+ M     V+ +  +  +A  AC +L     GKQ          
Sbjct: 345 GYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGL 404

Query: 263 -----------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                              ME+A++ FE +  K++VS+N  + G  R  +FE AF L  +
Sbjct: 405 ASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSE 464

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           + +  + ++  T++++++G                                    A+VG+
Sbjct: 465 ITERELGVSAFTFASLLSGV-----------------------------------ANVGS 489

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           +  G++ H   +K  LS +   P    V NALI MY+KC S+D A  +F+ +  +NR+V 
Sbjct: 490 IRKGEQIHSQVVKLGLSCN--QP----VCNALISMYSKCGSIDTASRVFNFM--ENRNVI 541

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG-RQIH 484
           +WT MI  ++++G A   L  F QM ++   VKPN  T    L AC+ +  +  G R  +
Sbjct: 542 SWTSMITGFAKHGFAIRVLETFNQMIEEG--VKPNEVTYVAILSACSHVGLVSEGWRHFN 599

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           +    ++ +  +   A C++D+  R+G +  A    + +  Q +V+ W + +    +H
Sbjct: 600 SMYEDHKIKPKMEHYA-CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVH 656



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 254/524 (48%), Gaps = 47/524 (8%)

Query: 198 QPGICDIVS-WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
           QP + + ++  + ++  +  +GD  G +     M  D     D V+  + L +C      
Sbjct: 19  QPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIR---- 74

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           +R  + G +  A+ + E     D V +N++++ YS+ G    A  +F+ MR+   K +VV
Sbjct: 75  ARDFRLGKLVHAR-LIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFG-KRDVV 132

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +WSA++A Y   G   +A+ VF +    GL PN     +++  C++   + +G+ T  + 
Sbjct: 133 SWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFL 192

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCK-SVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
           +K      G    D+ V  +LIDM+ K + S + A  +FD ++  N  V TWT+MI    
Sbjct: 193 MK-----TGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN--VVTWTLMITRCM 245

Query: 436 QNGGANDALALFPQM----FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
           Q G   +A+  F  M    F+ DK      FTLS    ACA L  L  G+Q+H++ +R+ 
Sbjct: 246 QMGFPREAIRFFLDMVLSGFESDK------FTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 492 YEMLIPFVANCLIDMYSR---SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH-GLGDKA 547
              L+  V   L+DMY++    G +D  R VFD ++  +V+SWT+L+TGY  +  L  +A
Sbjct: 300 ---LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEA 356

Query: 548 HWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
              F +M  +G + P+  TF     AC +      G +      K  G+++ +     ++
Sbjct: 357 INLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVI 415

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD- 665
            +  +++R+++A    E +  E   + +   L+G   + N E     A +LL   +E++ 
Sbjct: 416 SMFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCRNLNFE----QAFKLLSEITEREL 470

Query: 666 --GSYT---LLSNIYANAGRWKDVARIRSLMKHTGVK-KRPGCS 703
              ++T   LLS + AN G  +   +I S +   G+   +P C+
Sbjct: 471 GVSAFTFASLLSGV-ANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 15/234 (6%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + AF+L  ++  R      +TF  +L     + S R G  +H+ +   G   N  VCNAL
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           ++MY++C ++  A ++F+ M      +++SW +++  +A+ G A   L  F +M  +  V
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENR---NVISWTSMITGFAKHGFAIRVLETFNQMIEE-GV 571

Query: 237 QGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           + + V+ V  LSAC+ +G  S G +    M E  K+  +M+      +  MV    R G 
Sbjct: 572 KPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKME-----HYACMVDLLCRAGL 626

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
             DAF     M     + +V+ W   +   A R H +  L      +   L+PN
Sbjct: 627 LTDAFEFINTM---PFQADVLVWRTFLG--ACRVHSNTELGKLAARKILELDPN 675


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/548 (41%), Positives = 328/548 (59%), Gaps = 16/548 (2%)

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
           T    I S + A  +F K+ Q ++    V ++ +  GYA+      A+ +  Q+   GL 
Sbjct: 77  TSNPTIASMDHAHRMFDKIPQPDI----VLFNTMARGYARFDDPLRAILLCSQVLCSGLL 132

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+  T  SLL  CA + AL  GK+ HC  +K  L V     D++ V   LI+MY  C  V
Sbjct: 133 PDDYTFSSLLKACARLKALEEGKQLHCLAVK--LGVG----DNMYVCPTLINMYTACNDV 186

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           D AR +FD I      V  +  +I S ++N   N+ALALF ++  Q+  +KP   T+  A
Sbjct: 187 DAARRVFDKIGEPC--VVAYNAIITSCARNSRPNEALALFREL--QESGLKPTDVTMLVA 242

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L +CA L AL  GR IH YV +N ++  +  V   LIDMY++ G +D A  VF ++ +R+
Sbjct: 243 LSSCALLGALDLGRWIHEYVKKNGFDQYVK-VNTALIDMYAKCGSLDDAVSVFKDMPRRD 301

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             +W++++  Y  HG G +A     +M+K  + PD +TFL +LYACSH+G+V++G +YF 
Sbjct: 302 TQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFH 361

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           SM+ E+GI    +HY C++DLLGRA RL+EA + I+ +P++PTPI+W  LL+ C  H NV
Sbjct: 362 SMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNV 421

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           E+ +L   R+ EL+    G Y +LSN+ A  GRW DV  +R +M   G  K PGCS ++ 
Sbjct: 422 EMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEV 481

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEH 766
                 FF GD  H  S  ++  L  LV+ +K  GYVP TS   + D++DEEK  +L  H
Sbjct: 482 NNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYH 541

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEKLA+ YG+L T PGT IR+ KNLR+C DCH+A  FIS+I   +IILRD  RFHHFK+G
Sbjct: 542 SEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDG 601

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 602 KCSCGDYW 609



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 197/423 (46%), Gaps = 39/423 (9%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRIS------PS 96
           L+ +C SL ++  I    I    TH     ++   ++    +P ++ +          P 
Sbjct: 41  LIPKCTSLRELKQIQAYTIK---THQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQ 97

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           P  +  +N + R   R   P  A  L  Q++  G  PD+YTF  +LKAC  L +   G  
Sbjct: 98  P-DIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQ 156

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H +    G   N++VC  L+ MY  C+ +  AR++FD++ +P    +V++N I+ + A+
Sbjct: 157 LHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPC---VVAYNAIITSCAR 213

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +      L LF R   +  ++   V+++ ALS+CA LG    G+      +     + +K
Sbjct: 214 NSRPNEALALF-RELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVK 272

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           V       A++  Y++ GS +DA ++FK M + + +     WSA+I  YA  GHG +A+ 
Sbjct: 273 VN-----TALIDMYAKCGSLDDAVSVFKDMPRRDTQ----AWSAMIVAYATHGHGSQAIS 323

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE-----THCYTIKRVLSVDGSHPDDL 391
           + R+M+   ++P+ +T + +L  C+  G +  G E     TH Y I   +   G      
Sbjct: 324 MLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYG------ 377

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
                +ID+  +   ++ A    D +  K   +  W  ++ S S +G    A  +  ++F
Sbjct: 378 ----CMIDLLGRAGRLEEACKFIDELPIKPTPI-LWRTLLSSCSSHGNVEMAKLVIQRIF 432

Query: 452 QQD 454
           + D
Sbjct: 433 ELD 435


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/739 (34%), Positives = 384/739 (51%), Gaps = 60/739 (8%)

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD--TL 186
           + + P  +    +L+ C  +   +    VH      G ++N  + N +M      +    
Sbjct: 12  KSFSPPTHPLISLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDF 68

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
            YAR+LFDE+ +P   ++  WNT++  Y++    + G+ L+  M     V+ D  +    
Sbjct: 69  QYARRLFDEIPEP---NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRR-GVKPDRYTFPFL 124

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                       G+Q         V +     +V    A+V  Y   G  + A  +F   
Sbjct: 125 FKGFTRDIALEYGRQL-----HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 179

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                K +V+TW+ +I+ Y + G   E+  +F  M+   + P  VTLV +LS C+ +  L
Sbjct: 180 P----KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDL 235

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS-------------------- 406
             GK+ H Y   +   V+     +L++ NA+IDMYA C                      
Sbjct: 236 RTGKKVHSYV--KNCKVES----NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 289

Query: 407 -----------VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                      +DVAR  FD +  K  D  +WT MI  Y ++    +AL LF  M  Q  
Sbjct: 290 TIVSGFTNLGEIDVARNYFDKMPEK--DYVSWTAMIDGYIRSNRFKEALELFRNM--QAT 345

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            VKP+ FT+   L ACA L AL  G  I  Y+ RN+ +  + FV N LIDMY + GD+D 
Sbjct: 346 NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDL-FVRNALIDMYFKCGDVDK 404

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A  +F  + QR+  +WT+++ G  ++G G+KA   F  M K  + PD +T++ +L AC+H
Sbjct: 405 AESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 464

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +G+VD+G KYF  M+ + GI     HY C+VDLL RA RL EA E+IE MP++   I+W 
Sbjct: 465 TGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 524

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL GCR++   ++ E+   ++LELE +    Y LL NIYA   RW D+  +R +M   G
Sbjct: 525 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKG 584

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCS ++       F  GDR+HPQ++ I   L  + Q +K  GY P  S    D+ 
Sbjct: 585 IKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIA 644

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +E+K + +F HSEKLA+A+G++ + PG  IRITKNLR+C DCH+    +S + N E+I+R
Sbjct: 645 EEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVR 704

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D  RFHHFK G C+CK YW
Sbjct: 705 DRTRFHHFKHGLCSCKDYW 723



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 291/608 (47%), Gaps = 81/608 (13%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAP 83
           +K FS  T P I     LL  C+S+ Q+  +H Q I + L   P   + ++    +H   
Sbjct: 11  LKSFSPPTHPLIS----LLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYG 66

Query: 84  S--PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV 141
               A  L   I P P ++F WN +IR   RL  P     L+L+M+RRG  PD YTFPF+
Sbjct: 67  DFQYARRLFDEI-PEP-NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFL 124

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
            K      +   G  +H  +   G   NVFV  AL+ MY  C  L  AR +FD      +
Sbjct: 125 FKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFD------V 178

Query: 202 C---DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
           C   D+++WN I++AY + G  E    LF  M  D +V    V+LV  LSAC+ L     
Sbjct: 179 CPKADVITWNMIISAYNKVGKFEESRRLFLVME-DKQVLPTTVTLVLVLSACSKLKDLRT 237

Query: 259 GKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           GK+                          CG M+ A  +F  M  +D++SW  +V+G++ 
Sbjct: 238 GKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTN 297

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
           +G  + A   F KM ++    + V+W+A+I GY +     EAL++FR MQ   ++P+  T
Sbjct: 298 LGEIDVARNYFDKMPEK----DYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFT 353

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           +VS+L+ CA +GAL LG+    Y  +  +       +DL V NALIDMY KC  VD A  
Sbjct: 354 MVSVLTACAHLGALELGEWIRTYIDRNKIK------NDLFVRNALIDMYFKCGDVDKAES 407

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  ++   RD  TWT MI   + NG    AL +F  M +   L  P+  T    L AC 
Sbjct: 408 IFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL--PDEITYIGVLSACT 463

Query: 473 RLAALRFGRQIHAYVLRNQYEMLI-PFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNV 528
               +  GR+   Y LR   +  I P +A+  CL+D+ +R+G +  A  V +N+  + N 
Sbjct: 464 HTGLVDKGRK---YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS 520

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL----YACS--------HS 576
           + W +L+ G  ++   D A     Q+ +  L PD     VLL     AC           
Sbjct: 521 IVWGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVYVLLCNIYAACKRWNDLRELRQ 578

Query: 577 GMVDQGLK 584
            M+D+G+K
Sbjct: 579 MMMDKGIK 586


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/694 (36%), Positives = 383/694 (55%), Gaps = 25/694 (3%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L    +L S +  + +H+ + ++   +++   N L+ +YA+C ++ +   LF+    P 
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++V+W T++   ++S      L  F RM     +  +  +    L ACA     S G+
Sbjct: 163 T-NVVTWTTLINQLSRSNKPFQALTFFNRMR-TTGIYPNHFTFSAILPACAHAALLSEGQ 220

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q   +     + +   + D     A++  Y++ GS   A  +F +M   N+    V+W++
Sbjct: 221 QIHAL-----IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNL----VSWNS 271

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I G+ +      A+ VFR++    L P+ V++ S+LS CA +  L  GK+ H   +KR 
Sbjct: 272 MIVGFVKNKLYGRAIGVFREV--LSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRG 329

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L         + V N+L+DMY KC   + A  +F      +RDV TW VMI    +    
Sbjct: 330 LV------GLVYVKNSLVDMYCKCGLFEDATKLF--CGGGDRDVVTWNVMIMGCFRCRNF 381

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A   F  M ++   V+P+  + S    A A +AAL  G  IH++VL+  + +    ++
Sbjct: 382 EQACTYFQAMIREG--VEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGH-VKNSRIS 438

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           + L+ MY + G +  A  VF   K+ NVV WT+++T +  HG  ++A   F++M  EG+ 
Sbjct: 439 SSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVV 498

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           P+ +TF+ +L ACSH+G +D G KYF+SM+    I    EHYAC+VDLLGR  RL+EA  
Sbjct: 499 PEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACR 558

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
            IE MP EP  ++W ALL  C  HANVE+G   A RL +LE +  G+Y LLSNIY   G 
Sbjct: 559 FIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGM 618

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
            ++   +R LM   GV+K  GCSW+  K  T  F   DR+H ++Q+IY +L  L + IK 
Sbjct: 619 LEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKR 678

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GYV +T FA + V+  E+   L+ HSEKLALA+G+L   PG+P+RI KNLR CGDCH+ 
Sbjct: 679 RGYVAETQFATNSVEGSEEQS-LWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTV 737

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + F S I   EII+RD NRFH F  GSC+C  YW
Sbjct: 738 MKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 150/571 (26%), Positives = 250/571 (43%), Gaps = 55/571 (9%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSH---LIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           KSL     IH Q++  N  H   ++   L+  Y    +    L L         +V  W 
Sbjct: 111 KSLKHATQIHSQLVTTN-NHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWT 169

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
            LI +  R   P  A   F +M   G +P+ +TF  +L AC        G  +HA+I   
Sbjct: 170 TLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKH 229

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
            F ++ FV  AL+ MYA+C ++  A  +FDEM      ++VSWN+++  + ++       
Sbjct: 230 CFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHR---NLVSWNSMIVGFVKNK------ 280

Query: 225 MLFARMTGDVK----VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
            L+ R  G  +    +  D VS+ + LSACA L     GKQ         + +R  V  V
Sbjct: 281 -LYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQV-----HGSIVKRGLVGLV 334

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              N++V  Y + G FEDA  LF          +VVTW+ +I G  +  +  +A   F+ 
Sbjct: 335 YVKNSLVDMYCKCGLFEDATKLFCGGGDR----DVVTWNVMIMGCFRCRNFEQACTYFQA 390

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   G+EP+  +  SL    AS+ AL  G   H + +K        H  +  + ++L+ M
Sbjct: 391 MIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKT------GHVKNSRISSSLVTM 444

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y KC S+  A  +F     K  +V  WT MI  + Q+G AN+A+ LF +M  +   V P 
Sbjct: 445 YGKCGSMLDAYQVFRET--KEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEG--VVPE 500

Query: 461 AFTLSCALMACARLAALR-----FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
             T    L AC+    +      F    + + ++   E        C++D+  R G ++ 
Sbjct: 501 YITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYA-----CMVDLLGRVGRLEE 555

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYAC 573
           A    +++  + + + W +L+   G H   +      +++ K  L PD    +++L    
Sbjct: 556 ACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFK--LEPDNPGNYMLLSNIY 613

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
              GM+++     D + +  GI+   +   C
Sbjct: 614 IRHGMLEEA----DEVRRLMGINGVRKESGC 640



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 23/212 (10%)

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ + P +R+VA W  +  SY Q+G         P+  Q   +  P+   L   L   A+
Sbjct: 64  FEGLGPMSREVAFWLQLFTSY-QSG--------VPKFHQFSSV--PD---LKHLLNNAAK 109

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSW 531
           L +L+   QIH+ ++       +  + N L+ +Y++ G I    ++F+       NVV+W
Sbjct: 110 LKSLKHATQIHSQLVTTNNHASLANI-NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTW 168

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           T+L+          +A   F++MR  G+ P+  TF  +L AC+H+ ++ +G +    + K
Sbjct: 169 TTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHK 228

Query: 592 E------FGISARAEHYACIVDLLGRANRLDE 617
                  F  +A  + YA    +L   N  DE
Sbjct: 229 HCFLNDPFVATALLDMYAKCGSMLLAENVFDE 260


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 325/566 (57%), Gaps = 30/566 (5%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+ +G  + + ALF + +  +V      W+A+I G+A RG   +AL+ + QM   G+EPN
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFF----WTAIIHGHALRGLHEQALNFYAQMLTQGVEPN 127

Query: 350 VVTLVSLLSGCA-------SVGALLLGKETHCYTIKRVLSV--------------DGSHP 388
             T  S+L  C           A+ LG ++  Y    +L V              D    
Sbjct: 128 AFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
             L+ + A++  YAK   +D ARV+FD +  + RD   W VMI  Y+QNG  N+AL LF 
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGM--EERDGVCWNVMIDGYTQNGMPNEALVLFR 245

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M +     KPN  T+   L AC +L AL  GR +H+Y+  N  +  +  V   L+DMYS
Sbjct: 246 RMLKAK--AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNV-HVGTALVDMYS 302

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G ++ AR+VFD +  ++VV+W S++ GY MHG   +A   F  M + GL P  +TF+ 
Sbjct: 303 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIG 362

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L AC HSG V +G   F+ M  E+GI  + EHY C+V+LLGRA  +++A EL++ M +E
Sbjct: 363 ILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE 422

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           P P++W  LL  CR+H  + LGE     L++      G+Y LLSNIYA  G W  VAR+R
Sbjct: 423 PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLR 482

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
           ++MK +GVKK PGCS ++       F  G   HP+ ++IY +L  +   +K+ GY PQT 
Sbjct: 483 TMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTD 542

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
             LHD+ + EK   L  HSEKLA+A+G++ T PGT I+I KNLR+C DCH     IS I 
Sbjct: 543 IVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKIT 602

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
             +I++RD NRFHHF  GSC+C  YW
Sbjct: 603 GRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 157/641 (24%), Positives = 280/641 (43%), Gaps = 128/641 (19%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSH--LIAAYVSHNAPSPALSLLQRISPSPF 98
           ++L+ + K+++ +  IH  +    L H P  +  L  +Y S      +++L  R + +P 
Sbjct: 34  AVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGR-TQNP- 91

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SVF+W A+I       L + A   + QM+ +G  P+ +TF  +LK C   P    G ++H
Sbjct: 92  SVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEP----GKALH 147

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +     GFDS+++V   L+ +YAR   +  A+QLFD M +     +VS   ++  YA+ G
Sbjct: 148 SQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEK---SLVSLTAMLTCYAKHG 204

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           +                                             ++ A+ +F+ M+ +
Sbjct: 205 E---------------------------------------------LDAARVLFDGMEER 219

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D V WN M+ GY++ G   +A  LF++M +   K                          
Sbjct: 220 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK-------------------------- 253

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
                    PN VT++S+LS C  +GAL  G+  H Y     +        ++ V  AL+
Sbjct: 254 ---------PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQF------NVHVGTALV 298

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY+KC S++ AR++FD I   ++DV  W  MI  Y+ +G + +AL LF  M +    + 
Sbjct: 299 DMYSKCGSLEDARLVFDKI--DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG--LH 354

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
           P   T    L AC     +  G  I    ++++Y  + P + +  C++++  R+G ++ A
Sbjct: 355 PTNITFIGILSACGHSGWVTEGWDIFNK-MKDEYG-IEPKIEHYGCMVNLLGRAGHVEQA 412

Query: 517 RVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             +  N+  + + V W +L+    +HG   LG+K     + +  + LA  G T+++L   
Sbjct: 413 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEK---IVELLVDQNLANSG-TYILLSNI 468

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
            +  G  D G+    +M K+ G+       +  V+     N++ E +      P      
Sbjct: 469 YAAVGNWD-GVARLRTMMKDSGVKKEPGCSSIEVN-----NKVHEFLAGGLNHPKRKEIY 522

Query: 633 IWVALLNG-CRIHANV--------ELGELAANRLLELESEK 664
           + +  +NG  + H           ++GE    R LE+ SEK
Sbjct: 523 MMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEK 563


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/662 (37%), Positives = 377/662 (56%), Gaps = 35/662 (5%)

Query: 176 LMAMYARCDTLSYARQLFDEM-FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           ++  YA+   L  A  LF  + F+    D+VSWN+I+      GD      LF  M    
Sbjct: 92  MLHAYAQNHRLREAIDLFRRIPFK----DVVSWNSIIKGCLHCGDIVTARKLFDEMPRRT 147

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--KDVVSWNAMVTGYSR 292
            V     +LV+ L             + G+++EA+ +F  M+   +DV +WNAM+ GY  
Sbjct: 148 VVSW--TTLVDGL------------LRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCS 193

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G  +DA  LF +M   +V    ++WS++IAG    G   +AL +FR M   G+  +   
Sbjct: 194 NGRVDDALQLFCQMPSRDV----ISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGV 249

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           LV  LS  A + A  +G + HC   K      G    D  V  +L+  YA CK ++ A  
Sbjct: 250 LVCGLSAAAKIPAWRVGIQIHCSVFKL-----GDWHFDEFVSASLVTFYAGCKQMEAACR 304

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  +  K+  V  WT ++  Y  N    +AL +F +M + D  V PN  + + AL +C 
Sbjct: 305 VFGEVVYKS--VVIWTALLTGYGLNDKHREALEVFGEMMRID--VVPNESSFTSALNSCC 360

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L  +  G+ IHA  ++   E    +V   L+ MYS+ G +  A  VF  + ++NVVSW 
Sbjct: 361 GLEDIERGKVIHAAAVKMGLESG-GYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWN 419

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           S++ G   HG G  A   F+QM +EG+ PDG+T   LL ACSHSGM+ +   +F    ++
Sbjct: 420 SVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQK 479

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
             ++   EHY  +VD+LGR   L+EA  ++  MPM+   ++W+ALL+ CR H+N++L + 
Sbjct: 480 RSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKR 539

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
           AAN++ E+E +   +Y LLSN+YA++ RW +VA IR  MKH GV K+PG SW+  K    
Sbjct: 540 AANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKH 599

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F   DR+HP ++KIY+ L  L  ++K +GYVP   FALHDV+ E+K ++L  HSE+LA+
Sbjct: 600 KFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHSERLAI 659

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           A+G+L+T  G+ I + KNLR+CGDCH+AI  ++ I++ EI++RDS+RFH FK G C+C  
Sbjct: 660 AFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKNGICSCGD 719

Query: 833 YW 834
           YW
Sbjct: 720 YW 721



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 43/315 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W AL+           A  +F +MMR    P+E +F   L +C  L     G  +H
Sbjct: 313 SVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIH 372

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A     G +S  +V  +L+ MY++C  +S A  +F  + +    ++VSWN+++   AQ G
Sbjct: 373 AAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEK---NVVSWNSVIVGCAQHG 429

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L LF +M  +  V  DG+++   LSAC+           GM+++A+  F     K
Sbjct: 430 CGMWALALFNQMLRE-GVDPDGITVTGLLSACS---------HSGMLQKARCFFRYFGQK 479

Query: 279 DVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             V+     + +MV    R G  E+A A+   M    +K N + W A+++  A R H + 
Sbjct: 480 RSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSM---PMKANSMVWLALLS--ACRKHSNL 534

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVG------ALLLGKETHCYTIK--------- 378
            L      Q   +EP+      LLS   +        AL+  K  H   +K         
Sbjct: 535 DLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTL 594

Query: 379 -----RVLSVDGSHP 388
                + LS D SHP
Sbjct: 595 KGQKHKFLSADRSHP 609


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 268/773 (34%), Positives = 418/773 (54%), Gaps = 105/773 (13%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           SPSP +  + + +++   R+   +    LF         P  + + +++K  G     + 
Sbjct: 60  SPSPDASVY-SCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KS 113

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G+  HA +   G   + F+ NA++ MYA+   +  AR LF++M +  + D   WN++++ 
Sbjct: 114 GNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLAD---WNSMIS- 169

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
                                                   G W  G +     EA  +F 
Sbjct: 170 ----------------------------------------GCWKSGNET----EAVVLFN 185

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            M  +++++W +MVTGY+++G  E A   F +M + +V    V+W+A+ + YAQ+    E
Sbjct: 186 MMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSV----VSWNAMQSAYAQKECPKE 241

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLM 392
           AL++F QM   G+ P+  T V  +S C+S+G   L       +I R+  +D  H   +  
Sbjct: 242 ALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLAD-----SILRM--IDQKHIVLNSF 294

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPK------------------------------NR 422
           V  AL+DM+AK  ++++AR +FD +  +                               R
Sbjct: 295 VKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKR 354

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQ-QDKLVKPNAFTLSCALMACARLAALRFGR 481
           DV +W  MI  Y+QNG +  ++ LF +M    D  ++P+  T++  L AC  + AL+   
Sbjct: 355 DVVSWNSMIAGYAQNGESAMSIELFKEMISCMD--IQPDEVTIASVLSACGHIGALKLSY 412

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            +   V     ++ I    N LI MYS+ G +  A  +F  +  R+VVS+ +L++G+  +
Sbjct: 413 WVLDIVREKNIKLGISGF-NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAAN 471

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G G +A      M +EG+ PD VT++ +L ACSH+G++++G   F S+      +   +H
Sbjct: 472 GHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDH 526

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YAC+VDLLGRA  LDEA  LI+ MPM+P   ++ +LLN  RIH  V LGELAA++L ELE
Sbjct: 527 YACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELE 586

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            +  G+Y LLSNIYA+ GRW+DV R+R +MK  G+KK  G SWV+ K     F VGDR+H
Sbjct: 587 PQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSH 646

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
            QS+ IY++LA L +++K +G+V   S AL DV++EEK ++L  HSEKLA+ + +L +  
Sbjct: 647 EQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEV 706

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GT IR+ KNLRIC DCH+AI  IS +   EI++RD+NRFH F EG C+C  YW
Sbjct: 707 GTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/763 (33%), Positives = 406/763 (53%), Gaps = 26/763 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y    +P  A  +  RI     + F W+ L+   V+  +   A  ++ +M+R+   
Sbjct: 8   IIQMYGKCKSPEDARQVFDRIKQR--NAFSWSILVECYVQNAMYQEALEVYKEMVRKEIS 65

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D YT   VL AC +L     G  V       GF+ +V V  +L+ ++A+C  L  A  +
Sbjct: 66  IDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESV 125

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M    + DI+S   ++ AY + G  +  L  + +M     ++ D  +    L AC+S
Sbjct: 126 FRSM--GAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQ-GLEPDAFTYAAILGACSS 182

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                 GK        K + E     ++   NA++T Y++ GS +D+ +LF  M   +VK
Sbjct: 183 PDFLLDGKHI-----HKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTM---DVK 234

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            +VV+W+A+IA Y   GH  +A  +F +M   G  P++ T  S+L  CAS   L  G+  
Sbjct: 235 -DVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRML 293

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H     R          D  + N LI M+ +C S++ AR  F +I  K  ++  W  M+ 
Sbjct: 294 HVRITAR------GFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKK--ELGAWNTMLA 345

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           +Y+Q     DAL L+  M  +     P+ FT S  + +CA L ALR G+ IH       +
Sbjct: 346 AYAQFDKGKDALFLYKNMLLEG--FTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGF 403

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E  +  +   L++MY++ G +  A+  FD +  ++VVSW++++     HG  ++A     
Sbjct: 404 EKDV-ILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSH 462

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
            M  +G+A + VT   +L+ACSH G + +G+ YF  +S++FGI    E+    +DLLGRA
Sbjct: 463 LMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRA 522

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L EA  ++  MP + + +  V LL GC++H +V  G+    R++ LE E  GSY LL+
Sbjct: 523 GWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLN 582

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N+YA AGRW DVA++R  M+  GVK++ GCS ++ ++    F VGD ++P++ +I   L 
Sbjct: 583 NMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELE 642

Query: 733 GLVQRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
            L  R+K   GYVP T    HDV D++K +LL  HSEK+A+ +G++T+ PG+ +RI KNL
Sbjct: 643 RLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNL 702

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCH+     S I    II+RD  RFHHF+ G C+C  YW
Sbjct: 703 RVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 245/508 (48%), Gaps = 26/508 (5%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           + F+ N ++ MY +C +   ARQ+FD + Q    +  SW+ +V  Y Q+   +  L ++ 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQR---NAFSWSILVECYVQNAMYQEALEVYK 57

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M    ++  D  +L + L+AC  L     G+        +K  E    KDVV   +++ 
Sbjct: 58  EMVRK-EISIDAYTLSSVLAACTKLLDVEEGRMV-----QRKAEELGFEKDVVVATSLIH 111

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            +++ G  E+A ++F+ M       ++++ +A+I  Y + G    ALD + +M+  GLEP
Sbjct: 112 LFAKCGCLEEAESVFRSM---GAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEP 168

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           +  T  ++L  C+S   LL GK  H    K +L  +  H  ++ V NALI MYAKC S+ 
Sbjct: 169 DAFTYAAILGACSSPDFLLDGKHIH----KHIL--ESKHFGNISVRNALITMYAKCGSLK 222

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            ++ +F  +  K  DV +W  MI +Y+  G   DA +LF +M        P+ +T S  L
Sbjct: 223 DSKSLFLTMDVK--DVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGH--TPDIYTFSSIL 278

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            ACA    L  GR +H  +    ++     + N LI M++R G +++AR  F +++++ +
Sbjct: 279 GACASPKRLEDGRMLHVRITARGFDRDFA-MQNNLISMFTRCGSLESARRYFYSIEKKEL 337

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
            +W +++  Y     G  A + +  M  EG  PD  TF  ++ +C+  G + +G K+   
Sbjct: 338 GAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-KFIHE 396

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
            S   G          +V++  +   L +A +  +G+  +   + W A++     H + E
Sbjct: 397 CSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDV-VSWSAMIAASAQHGHAE 455

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYA 676
              L  + L+ L+       T  S ++A
Sbjct: 456 EA-LELSHLMNLQGIAQNEVTASSVLHA 482


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/550 (41%), Positives = 332/550 (60%), Gaps = 23/550 (4%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y +    EDA  +  +M ++NV    V+W+A+I+ Y+Q GH  EAL VF +M     +PN
Sbjct: 96  YGKCDCLEDARKVLDEMPEKNV----VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPN 151

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             T  ++L+ C     L LGK+ H   +K       ++   + V ++L+DMYAK   ++ 
Sbjct: 152 EFTFATVLTSCIRASGLALGKQIHGLIVK------WNYDSHIFVGSSLLDMYAKAGQIEE 205

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +F+ +    RDV + T +I  Y+Q G   +AL +F ++  Q + ++PN  T +  L 
Sbjct: 206 AREIFECLP--ERDVVSCTAIIAGYAQLGLDEEALEMFQRL--QSEGMRPNYVTYASLLT 261

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVA---NCLIDMYSRSGDIDTARVVFDNLKQR 526
           A + LA L  G+Q H +VLR +    +PF A   N LIDMYS+ G++  A+ +FDN+ +R
Sbjct: 262 ALSGLALLDHGKQAHCHVLRRE----LPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER 317

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKY 585
             +SW +++ GY  HGLG +    F  MR E  + PD VT L +L  CSH  M D GL  
Sbjct: 318 TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSI 377

Query: 586 FDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           +D M + E+GI    EHY CIVD+LGRA R+DEA E I+ MP +PT  +  +LL  CR+H
Sbjct: 378 YDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVH 437

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            +V++GE   +RL+E+E E  G+Y +LSN+YA+AGRW+DV  +R++M    V K PG SW
Sbjct: 438 LSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSW 497

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           +Q ++    F   DRTHP+ +++   +  +  ++K  GYVP  S  L+DVD+E+K  +L 
Sbjct: 498 IQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLL 557

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLAL +G++TT  G PIR+ KNLRIC DCH+     S +   E+ LRD NRFH   
Sbjct: 558 GHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIV 617

Query: 825 EGSCTCKGYW 834
           +G C+C  YW
Sbjct: 618 KGICSCGDYW 627



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 200/426 (46%), Gaps = 85/426 (19%)

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
            L+M+  G     + +  +L AC +  + R G  VHA +  + +    ++   L+  Y +
Sbjct: 39  LLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGK 98

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-- 240
           CD L  AR++ DEM +    ++VSW  +++ Y+Q+G +   L +FA M     ++ DG  
Sbjct: 99  CDCLEDARKVLDEMPEK---NVVSWTAMISRYSQTGHSSEALSVFAEM-----MRSDGKP 150

Query: 241 --VSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVF 272
              +    L++C      + GKQ                           G +EEA+++F
Sbjct: 151 NEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIF 210

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           E +  +DVVS  A++ GY+++G  E+A  +F++++ E ++ N VT++             
Sbjct: 211 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYA------------- 257

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
                                 SLL+  + +  L  GK+ HC+ ++R L      P   +
Sbjct: 258 ----------------------SLLTALSGLALLDHGKQAHCHVLRREL------PFYAV 289

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           + N+LIDMY+KC ++  A+ +FD +    R   +W  M+  YS++G   + L LF ++ +
Sbjct: 290 LQNSLIDMYSKCGNLSYAQRLFDNMP--ERTAISWNAMLVGYSKHGLGREVLELF-RLMR 346

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRS 510
            +K VKP+A TL   L  C+       G  I+  ++  +Y  + P   +  C++DM  R+
Sbjct: 347 DEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYG-IKPDTEHYGCIVDMLGRA 405

Query: 511 GDIDTA 516
           G ID A
Sbjct: 406 GRIDEA 411



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 31/253 (12%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I R  +      A  +F +MMR    P+E+TF  VL +C        G  +H
Sbjct: 116 NVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIH 175

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +I    +DS++FV ++L+ MYA+   +  AR++F+ + +    D+VS   I+A YAQ G
Sbjct: 176 GLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPER---DVVSCTAIIAGYAQLG 232

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             E  L +F R+  +  ++ + V+  + L+A + L     GKQ                 
Sbjct: 233 LDEEALEMFQRLQSE-GMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ 291

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-V 311
                    CG +  A+++F+ M  +  +SWNAM+ GYS+ G   +   LF+ MR E  V
Sbjct: 292 NSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRV 351

Query: 312 KLNVVTWSAVIAG 324
           K + VT  AV++G
Sbjct: 352 KPDAVTLLAVLSG 364



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 6/196 (3%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L AC    ALR G+++HA++++ +Y +   ++   L+  Y +   ++ AR V D + ++N
Sbjct: 58  LNACLDKRALREGQRVHAHMIKTRY-LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VVSWT++++ Y   G   +A   F +M +    P+  TF  +L +C  +  +  G K   
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALG-KQIH 175

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            +  ++   +     + ++D+  +A +++EA E+ E +P E   +   A++ G   +A +
Sbjct: 176 GLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP-ERDVVSCTAIIAG---YAQL 231

Query: 648 ELGELAANRLLELESE 663
            L E A      L+SE
Sbjct: 232 GLDEEALEMFQRLQSE 247


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/635 (37%), Positives = 368/635 (57%), Gaps = 25/635 (3%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D+++WN+++ A+  S      L  +  M    +   D  +  + L  CA L  +  GK  
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
                  +V + M   D+     ++  Y+  G  + A  LF++M   N     V W+++I
Sbjct: 102 -----HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNK----VVWTSMI 152

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK---R 379
           +GY +    +EAL ++++M+  G  P+ VT+ +L+S CA +  L +G + H +  +   +
Sbjct: 153 SGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMK 212

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
           + +V GS         AL++MYAKC  +  AR +FD ++ K  DV  W+ +I  Y +N  
Sbjct: 213 ICAVLGS---------ALVNMYAKCGDLKTARQVFDKLSDK--DVYAWSALIFGYVKNNR 261

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           + +AL LF ++     + +PN  T+   + ACA+L  L  GR +H Y+ R Q    +  +
Sbjct: 262 STEALQLFREVAGGSNM-RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVS-L 319

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N LIDM+S+ GDID A+ +FD++  ++++SW S++ G+ +HGLG +A   F  M+   L
Sbjct: 320 NNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDL 379

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD +TF+ +L ACSH+G+V +G K F  +   +G+  ++EHY C+VDLL RA  L EA 
Sbjct: 380 QPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAR 439

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           E I  MP++P   IW ++L  CR++ N+ELGE AA  LL+LE   DG Y LLSNIYA   
Sbjct: 440 EFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRK 499

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
            W +V ++R LM   G++K PGCS V       +F  GD +HP+  +I  +L  + +++K
Sbjct: 500 MWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLK 559

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYV  TS  L ++DD +K + + +HSEKLAL YG+L +  G  I I KNLR+C DCH+
Sbjct: 560 LAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHT 619

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I  +S I   +I LRD NRFHHFK+GSC+C+ YW
Sbjct: 620 LIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 226/464 (48%), Gaps = 31/464 (6%)

Query: 60  IIVQNLTHVPPS--HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPD 117
           ++V    H  PS   LIA  +S  +     +           V  WN+++R  V   +P 
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 118 NAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
            A + + +M+ R  + PD +TFP +LK C  L   + G  +H  +      S++++   L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MYA C  L  AR LF+ M   G  + V W ++++ Y ++      L+L+ +M  D   
Sbjct: 121 LNMYAACGDLKSARFLFERM---GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEED-GF 176

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGS 295
             D V++   +SACA L      K  G+  +       M +K   V  +A+V  Y++ G 
Sbjct: 177 SPDEVTMATLVSACAEL------KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLV 354
            + A  +F K+  +    +V  WSA+I GY +     EAL +FR++     + PN VT++
Sbjct: 231 LKTARQVFDKLSDK----DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTIL 286

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           +++S CA +G L  G+  H Y  +        H   L   N+LIDM++KC  +D A+ +F
Sbjct: 287 AVISACAQLGDLETGRWVHDYITR----TQKGHSVSLN--NSLIDMFSKCGDIDAAKRIF 340

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D+++ K  D+ +W  M+  ++ +G   +ALA F  M   D  ++P+  T    L AC+  
Sbjct: 341 DSMSYK--DLISWNSMVNGFALHGLGREALAQFRLMQTTD--LQPDEITFIGVLTACSHA 396

Query: 475 AALRFGRQIHAYVLRNQYEM-LIPFVANCLIDMYSRSGDIDTAR 517
             ++ G+++  Y +   Y + L      C++D+  R+G +  AR
Sbjct: 397 GLVQEGKKLF-YEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAR 439



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 149/315 (47%), Gaps = 38/315 (12%)

Query: 54  YLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           Y++H  + ++       + L+  Y +      A  L +R+      V  W ++I   ++ 
Sbjct: 108 YMLHSDLYIE-------TTLLNMYAACGDLKSARFLFERMGHRNKVV--WTSMISGYMKN 158

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
             P+ A  L+ +M   G+ PDE T   ++ AC EL     G  +H+ I          + 
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           +AL+ MYA+C  L  ARQ+FD++      D+ +W+ ++  Y ++  +   L LF  + G 
Sbjct: 219 SALVNMYAKCGDLKTARQVFDKLSDK---DVYAWSALIFGYVKNNRSTEALQLFREVAGG 275

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMMEE 267
             ++ + V+++  +SACA LG    G+                          +CG ++ 
Sbjct: 276 SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDA 335

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           AK++F+ M  KD++SWN+MV G++  G   +A A F+ M+  +++ + +T+  V+   + 
Sbjct: 336 AKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSH 395

Query: 328 RGHGHEALDVFRQMQ 342
            G   E   +F +++
Sbjct: 396 AGLVQEGKKLFYEIE 410


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 268/773 (34%), Positives = 418/773 (54%), Gaps = 105/773 (13%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           SPSP +  + + +++   R+   +    LF         P  + + +++K  G     + 
Sbjct: 60  SPSPDASVY-SCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KS 113

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G+  HA +   G   + F+ NA++ MYA+   +  AR LF++M +  + D   WN++++ 
Sbjct: 114 GNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLAD---WNSMIS- 169

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
                                                   G W  G +     EA  +F 
Sbjct: 170 ----------------------------------------GCWKSGNET----EAVVLFN 185

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            M  +++++W +MVTGY+++G  E A   F +M + +V    V+W+A+ + YAQ+    E
Sbjct: 186 MMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSV----VSWNAMQSAYAQKECPKE 241

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLM 392
           AL++F QM   G+ P+  T V  +S C+S+G   L       +I R+  +D  H   +  
Sbjct: 242 ALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLAD-----SILRM--IDQKHIVLNSF 294

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPK------------------------------NR 422
           V  AL+DM+AK  ++++AR +FD +  +                               R
Sbjct: 295 VKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKR 354

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQ-QDKLVKPNAFTLSCALMACARLAALRFGR 481
           DV +W  MI  Y+QNG +  ++ LF +M    D  ++P+  T++  L AC  + AL+   
Sbjct: 355 DVVSWNSMIAGYAQNGESAMSIELFKEMISCMD--IQPDEVTIASVLSACGHIGALKLSY 412

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            +   V     ++ I    N LI MYS+ G +  A  +F  +  R+VVS+ +L++G+  +
Sbjct: 413 WVLDIVREKNIKLGISGF-NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAAN 471

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G G +A      M +EG+ PD VT++ +L ACSH+G++++G   F S+      +   +H
Sbjct: 472 GHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDH 526

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YAC+VDLLGRA  LDEA  LI+ MPM+P   ++ +LLN  RIH  V LGELAA++L ELE
Sbjct: 527 YACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELE 586

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            +  G+Y LLSNIYA+ GRW+DV R+R +MK  G+KK  G SWV+ K     F VGDR+H
Sbjct: 587 PQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSH 646

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
            QS+ IY++LA L +++K +G+V   S AL DV++EEK ++L  HSEKLA+ + +L +  
Sbjct: 647 EQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEV 706

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           GT IR+ KNLRIC DCH+AI  IS +   EI++RD+NRFH F EG C+C  YW
Sbjct: 707 GTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 273/786 (34%), Positives = 410/786 (52%), Gaps = 93/786 (11%)

Query: 91  QRISPSPFS------VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
           ++I+ + FS      V  W+ +I         + A  LF +M+ + + P+  T    L+A
Sbjct: 222 EKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 281

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C    +   G  +H +                 A++                      D+
Sbjct: 282 CAVSRNLEEGKKIHKI-----------------AVWK---------------------DV 303

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           VSW  +++ YAQ+G A   + +F  M  D  +Q D V++V  L+A + LG + +   C  
Sbjct: 304 VSWVALLSGYAQNGMAYKSMGVFRNMLSD-GIQPDAVAVVKILAASSELGIFQQA-LCLH 361

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
               +  F      +V    +++  YS+ GS  DA  LFK M    +  +VV WS++IA 
Sbjct: 362 GYVVRSGFN----SNVFVGASLIELYSKCGSLGDAVKLFKGM----IVRDVVIWSSMIAA 413

Query: 325 YAQRGHGHEALDVFRQM-------QFC---GLEPNVVTLVSLLSGCAS------VGALL- 367
           Y   G G EAL++F QM         C    ++P V   +++ S   +      V A   
Sbjct: 414 YGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYM 473

Query: 368 ------LGKETHCYTIKRVLSVDGSHPD--------DLMVINALIDMYAKCKSVDVARVM 413
                 LG     +      + D S  +        D  ++     MY     +D A ++
Sbjct: 474 RAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIV 533

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ-----DKLVKPNAFTLSCAL 468
           F+ I   N     W VMI  ++ +G    +L L+ +M ++     +  V PN  ++   L
Sbjct: 534 FEDIP--NPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVL 591

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
           +AC  L ALR G   H+YV++  +E  I  VA  ++DMYS+ G +D AR +FD    +++
Sbjct: 592 LACGNLGALRKGEWFHSYVIQTGFEFDI-LVATAIMDMYSKCGSLDLARCLFDETAGKDL 650

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           V W++++  YG+HG G KA   FDQM K G+ P  VTF  +L ACSHSG++++G  YF  
Sbjct: 651 VCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQL 710

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M++EF I+ +  +YAC+VDLLGRA +L EAV+LIE MP+EP   IW +LL  CRIH N++
Sbjct: 711 MTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLD 770

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           L E  A+ L  L+    G + LLSNIYA   RW +V ++R +M   G  K  G S V+  
Sbjct: 771 LAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYD 830

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F VGDR+HPQ +K+Y  L  L   +K +GYVP T F LHD+++E K   L  HSE
Sbjct: 831 NQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSE 890

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           +LA+A+G++ T+PGT +RITKNLRICGDCH+AI  IS I+N  I++RD +RFH F++G C
Sbjct: 891 RLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVC 950

Query: 829 TCKGYW 834
           +C  YW
Sbjct: 951 SCGDYW 956



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 171/682 (25%), Positives = 295/682 (43%), Gaps = 104/682 (15%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFS 99
           L + C +   V  +H Q+    + H   +       S  A   +L   +++   +P P +
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILH--DTFFATKLNSLYAKCASLQAARKVFDETPHP-N 66

Query: 100 VFWWNALIRRAVRLRLPDNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V  WN+ +R   R +  +   RLF L +   G  PD +T P  LKAC  L     G  +H
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 159 AVICSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
                +    S++FV +AL+ +Y++C  +  A ++F+E  +P   D V W ++V  Y Q+
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRP---DTVLWTSMVTGYQQN 183

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
            D E  L LF++M       GD + LVN+L     L  +++    G  + A  +F +M  
Sbjct: 184 NDPEEALALFSQMVMMDCFDGD-LPLVNSL-----LNLYAK---TGCEKIAANLFSKMPE 234

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN----------------------- 314
           KDV+SW+ M+  Y+   +  +A  LF +M ++  + N                       
Sbjct: 235 KDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKI 294

Query: 315 --------VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                   VV+W A+++GYAQ G  ++++ VFR M   G++P+ V +V +L+  + +G  
Sbjct: 295 HKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIF 354

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
                 H Y ++   +       ++ V  +LI++Y+KC S+  A  +F  +    RDV  
Sbjct: 355 QQALCLHGYVVRSGFN------SNVFVGASLIELYSKCGSLGDAVKLFKGMIV--RDVVI 406

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQ-------------QDKLVKPNAFTLSCALMACAR 473
           W+ MI +Y  +G   +AL +F QM Q             Q ++  P A T SC L     
Sbjct: 407 WSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAIT-SCTLATHIP 465

Query: 474 LAALRFGRQIHAYVLRNQYEML--IPFVANCLID--------------------MYSRSG 511
                F  + H   L + +E+    PF A  +                      MY    
Sbjct: 466 WKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFN 525

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-------V 564
            ID A +VF+++       W  ++ G+   G    +   + +M ++GL PD        V
Sbjct: 526 RIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRV 585

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           + L +L AC + G + +G ++F S   + G          I+D+  +   LD A  L + 
Sbjct: 586 SILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDE 644

Query: 625 MPMEPTPIIWVALLNGCRIHAN 646
              +   + W A++    IH +
Sbjct: 645 TAGKDL-VCWSAMIASYGIHGH 665



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 27/245 (11%)

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE- 135
           YVS N    A  + + I P+P S F WN +IR         ++  L+ +MM +G  PD  
Sbjct: 521 YVSFNRIDAASIVFEDI-PNPCS-FLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNS 578

Query: 136 ------YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
                  +   VL ACG L + R G   H+ +  +GF+ ++ V  A+M MY++C +L  A
Sbjct: 579 GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA 638

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R LFDE       D+V W+ ++A+Y   G     + LF +M     V+   V+    LSA
Sbjct: 639 RCLFDETAGK---DLVCWSAMIASYGIHGHGRKAIDLFDQMV-KAGVRPSHVTFTCVLSA 694

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFK 304
           C+           G++EE K  F+ M  + V++     +  MV    R G   +A  L +
Sbjct: 695 CS---------HSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIE 745

Query: 305 KMRQE 309
            M  E
Sbjct: 746 NMPVE 750



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 137/311 (44%), Gaps = 24/311 (7%)

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           D      L  +YAKC S+  AR +FD     N  V  W   + SY +     + L LF  
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPN--VHLWNSTLRSYCREKQWEETLRLFHL 92

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M        P+ FT+  AL ACA L  L  G+ IH +  +N       FV + L+++YS+
Sbjct: 93  MICTAGEA-PDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSK 151

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK----EGLAPDGVT 565
            G +  A  VF+  ++ + V WTS++TGY  +   ++A   F QM      +G  P  V 
Sbjct: 152 CGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLP-LVN 210

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
            L+ LYA   +G        F  M ++  IS     ++ ++         +EA+ L   M
Sbjct: 211 SLLNLYA--KTGCEKIAANLFSKMPEKDVIS-----WSTMIACYANNEAANEALNLFHEM 263

Query: 626 ---PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD--GSYTLLSNIYANAGR 680
                EP  +  V+ L  C +  N+E G+    ++ ++   KD      LLS    N   
Sbjct: 264 IEKRFEPNSVTVVSALQACAVSRNLEEGK----KIHKIAVWKDVVSWVALLSGYAQNGMA 319

Query: 681 WKDVARIRSLM 691
           +K +   R+++
Sbjct: 320 YKSMGVFRNML 330


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/734 (33%), Positives = 399/734 (54%), Gaps = 25/734 (3%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F  N +IR      LP  A   +  M+  G  PD +TFP V+K C  L     G + H +
Sbjct: 73  FLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGM 132

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   G + +V+ CN+L+A YA+   +  A ++FD M    + DIV+WNT+V  Y  +G  
Sbjct: 133 VIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGM---PVRDIVTWNTMVDGYVSNGLG 189

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L  F  M   ++VQ D V ++ AL+AC    +  +GK     E    V      +D+
Sbjct: 190 SLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGK-----EIHGYVIRHGLEQDI 244

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               +++  Y + G    A ++F  M    V    VTW+ +I GYA      EA D F Q
Sbjct: 245 KVGTSLLDMYCKCGEVAYARSVFATMPLRTV----VTWNCMIGGYALNERPDEAFDCFMQ 300

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  GL+  VVT ++LL+ CA   + L G+  H Y ++R           +++  AL++M
Sbjct: 301 MRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRR------QFLPHVVLETALLEM 354

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y K   V+ +  +F  IA  N+ + +W  MI +Y       +A+ LF ++  Q   + P+
Sbjct: 355 YGKVGKVESSEKIFGKIA--NKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQP--LYPD 410

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            FT+S  + A   L +LR  RQIH+Y++   Y      + N ++ MY+RSGD+  +R +F
Sbjct: 411 YFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENT-LIMNAVLHMYARSGDVVASREIF 469

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D +  ++V+SW +++ GY +HG G  A   FD+M+  GL P+  TF+ +L ACS SG+VD
Sbjct: 470 DKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVD 529

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G  +F+ M +E+G+  + EHY C+ DLLGR   L E ++ IE MP++PT  +W +LL  
Sbjct: 530 EGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTA 589

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            R   ++++ E AA R+ +LE +  G Y +LS++YA+AGRW+DV R+R LMK  G+++  
Sbjct: 590 SRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTE 649

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
             S V+      +F  GD +H QS+ I+E+   L ++I+        S+ +         
Sbjct: 650 PISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEETDDTRNQSYPVPVAT--RTT 707

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            +  +HS +LA+ +G++++  G+PI + KN+RIC  CH A+  IS      I++ DS  +
Sbjct: 708 TMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLISRYSGRRIVVGDSKIY 767

Query: 821 HHFKEGSCTCKGYW 834
           H F +GSC C  YW
Sbjct: 768 HEFSDGSCCCGDYW 781



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 44/370 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN +I        PD AF  F+QM   G   +  T   +L AC +  SS  G SVH
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +    F  +V +  AL+ MY +   +  + ++F ++       +VSWN ++AAY    
Sbjct: 334 GYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANK---TLVSWNNMIAAYMYKE 390

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                + LF  +     +  D  ++   + A   LG+    +Q                 
Sbjct: 391 MYTEAITLFLELLNQ-PLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIM 449

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                     G +  ++++F++M  KDV+SWN M+ GY+  G  + A  +F +M+   ++
Sbjct: 450 NAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQ 509

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            N  T+ +V+   +  G   E    F  M Q  G+ P +        GC +    LLG+E
Sbjct: 510 PNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHY-----GCMTD---LLGRE 561

Query: 372 THCYTIKRVLSVDGSHPDDLM--VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
                ++ VL    S P D    V  +L+        +D+A    + I     D     +
Sbjct: 562 G---DLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYI 618

Query: 430 MIGSYSQNGG 439
           ++ S   + G
Sbjct: 619 VLSSMYADAG 628


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/742 (34%), Positives = 383/742 (51%), Gaps = 78/742 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W++L+    +        R F QM   G  P +YT   VL+AC  L     G  +H    
Sbjct: 102 WSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAI 161

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               ++N+FV   L+ MY++C  L  A  LF  +  P   + V W  ++  YAQ+G++  
Sbjct: 162 KIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSL--PDRKNYVQWTAMLTGYAQNGESLK 219

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +  F  M     ++ +  +  + L+AC S+  ++ G+Q               V   + 
Sbjct: 220 AIQCFKEMRNQ-GMESNHFTFPSILTACTSISAYAFGRQ---------------VHGCII 263

Query: 283 WN----------AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           W+          A+V  Y++ G    A  +   M  ++V    V W+++I G    G+  
Sbjct: 264 WSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDV----VCWNSMIVGCVTHGYME 319

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EAL +F +M    +  +  T  S+L   AS   L +G+  H  TIK       +      
Sbjct: 320 EALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT------ 373

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V NAL+DMYAK  ++  A  +F+ I  K  DV +WT ++  Y  NG    AL LF  M  
Sbjct: 374 VSNALVDMYAKQGNLSCALDVFNKILDK--DVISWTSLVTGYVHNGFHEKALQLFCDM-- 429

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           +   V  + F ++C   ACA L  + FGRQ+HA  +++    L+    N LI MY++ G 
Sbjct: 430 RTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLS-AENSLITMYAKCGC 488

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ A  V D+++ RNV+SWT+++ GY  +GL                             
Sbjct: 489 LEDAIRVXDSMETRNVISWTAIIVGYAQNGL----------------------------- 519

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
                 V+ G  YF+SM K +GI   ++ YAC++DLLGRA +++EA  L+  M +EP   
Sbjct: 520 ------VETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDAT 573

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           IW +LL+ CR+H N+ELGE A   L++LE      Y LLSN+++ AGRW+D A IR  MK
Sbjct: 574 IWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMK 633

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
             G+ + PG SW++ K    TF   DR+HP + +IY  +  ++  IK  G+VP  +FAL 
Sbjct: 634 TMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALR 693

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           D+D+E K   L  HSEKLA+A+G+LT A G PIRI KNLR+CGDCHSA+ +IS I    I
Sbjct: 694 DMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHI 753

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           ILRD N FHHF EG C+C  +W
Sbjct: 754 ILRDLNCFHHFIEGKCSCGDFW 775



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 202/378 (53%), Gaps = 16/378 (4%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++EA+K+F++M  +D  +WN M++ Y+ +G+  +A  LF     E    N +TWS+++
Sbjct: 51  GRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLF----NETPIXNSITWSSLV 106

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +GY + G   E L  F QM   G +P+  TL S+L  C+++  L  GK  HCY IK  L 
Sbjct: 107 SGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLE 166

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  ++ V   L+DMY+KCK +  A  +F ++ P  ++   WT M+  Y+QNG +  
Sbjct: 167 A------NIFVATGLVDMYSKCKCLLEAEYLFFSL-PDRKNYVQWTAMLTGYAQNGESLK 219

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+  F +M  Q   ++ N FT    L AC  ++A  FGRQ+H  ++ + +   + +V + 
Sbjct: 220 AIQCFKEMRNQG--MESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV-YVQSA 276

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+DMY++ GD+ +AR++ D ++  +VV W S++ G   HG  ++A   F +M    +  D
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
             T+  +L + +    +  G +   S++ + G  A       +VD+  +   L  A+++ 
Sbjct: 337 DFTYPSVLKSLASCKNLKIG-ESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVF 395

Query: 623 EGMPMEPTPIIWVALLNG 640
             + ++   I W +L+ G
Sbjct: 396 NKI-LDKDVISWTSLVTG 412



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 141/298 (47%), Gaps = 34/298 (11%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN++I   V     + A  LF +M  R    D++T+P VLK+     + + G SVH+
Sbjct: 302 VVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHS 361

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +   +GFD+   V NAL+ MYA+   LS A  +F+++      D++SW ++V  Y  +G 
Sbjct: 362 LTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDK---DVISWTSLVTGYVHNGF 418

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
            E  L LF  M    +V  D   +    SACA L     G+Q                  
Sbjct: 419 HEKALQLFCDMR-TARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAEN 477

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ-ENVK 312
                   CG +E+A +V + M+ ++V+SW A++ GY++ G  E   + F+ M +   +K
Sbjct: 478 SLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIK 537

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
                ++ +I    + G  +EA  +  +M    +EP+     SLLS C   G L LG+
Sbjct: 538 PASDRYACMIDLLGRAGKINEAEHLLNRMD---VEPDATIWKSLLSACRVHGNLELGE 592


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 342/574 (59%), Gaps = 15/574 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G ++EA   F  M +++++S N ++ G+ + G  + A  +F +M    ++ NV TW+A
Sbjct: 4   KMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEM----LERNVATWNA 59

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +++G  Q       L +FR+M   G  P+  TL S+L GCA + A   GK+ H Y +K  
Sbjct: 60  MVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKY- 118

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                 +  +L+V ++L  MY K  S+     +  A+  + R+V  W  +I   +QNG  
Sbjct: 119 -----GYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAM--RIRNVVAWNTLIAGNAQNGHF 171

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
              L L+  M      ++P+  TL   + + A LA L  G+QIHA  ++      +  V 
Sbjct: 172 EGVLDLYNMMKMSG--LRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVA-VL 228

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           + LI MYS+ G ++ +     + +  + V W+S++  YG HG G++A   F+QM +EGL 
Sbjct: 229 SSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLG 288

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
            + VTFL LLYACSH+G+ ++G+ +F  M +++G+  R EHY C+VDLLGR+  LDEA  
Sbjct: 289 GNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEA 348

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           +I  MP+E   +IW  LL+ CRIH N ++    A  +L L  +   +Y LLSNI+A+A R
Sbjct: 349 MIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKR 408

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           WKDV+++R+ M+   VKK PG SW++ K     F +GD++HP S++I   L  L++ +K 
Sbjct: 409 WKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKL 468

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GYVP T+   HD D EEK + L  HSEKLA+A+G++   PG+PIR+ KNLRIC DCH A
Sbjct: 469 RGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVA 528

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I  IS I N EII+RD++RFHHFK G C+C  YW
Sbjct: 529 IKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 176/363 (48%), Gaps = 25/363 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  +V H     A+ +   +     +V  WNA++   ++    +N   LF +M   G+ 
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLER--NVATWNAMVSGLIQFEFNENGLFLFREMHELGFL 86

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE+T   VL+ C  L +S  G  VHA +   G++ N+ V ++L  MY +  +L    ++
Sbjct: 87  PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV 146

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF--ARMTGDVKVQGDGVSLVNALSAC 250
              M    I ++V+WNT++A  AQ+G  EG L L+   +M+G   ++ D ++LV+ +S+ 
Sbjct: 147 IKAM---RIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSG---LRPDKITLVSVISSS 200

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           A L T  +G+Q  +  EA K      V  + S   +++ YS+ G  ED+           
Sbjct: 201 AELATLFQGQQ--IHAEAIKAGANSAVAVLSS---LISMYSKCGCLEDSMKALLDCEHP- 254

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              + V WS++IA Y   G G EA+ +F QM+  GL  N VT +SLL  C+  G     K
Sbjct: 255 ---DSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGL----K 307

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           E      K ++   G  P  L     ++D+  +   +D A  M  ++ P   DV  W  +
Sbjct: 308 EKGMGFFKLMVEKYGLKP-RLEHYTCVVDLLGRSGCLDEAEAMIRSM-PLEADVVIWKTL 365

Query: 431 IGS 433
           + +
Sbjct: 366 LSA 368


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/638 (38%), Positives = 370/638 (57%), Gaps = 32/638 (5%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           ++VSW  +++  +Q+      +  F   R+ G+V  Q    +  +A+ ACASLG+   GK
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQ---FAFSSAIRACASLGSIEMGK 61

Query: 261 Q--CGMMEEA--KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           Q  C  ++     ++F    ++D+         YS+ G+  DA  +F++M  ++     V
Sbjct: 62  QMHCLALKFGIGSELFVGSNLEDM---------YSKCGAMFDACKVFEEMPCKDE----V 108

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+A+I GY++ G   EAL  F++M    +  +   L S L  C ++ A   G+  H   
Sbjct: 109 SWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 168

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K           D+ V NAL DMY+K   ++ A  +F  I  + R+V ++T +I  Y +
Sbjct: 169 VKL------GFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVE 221

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
                  L++F ++ +Q   ++PN FT S  + ACA  AAL  G Q+HA V++  ++   
Sbjct: 222 TEQIEKGLSVFVELRRQG--IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDE-D 278

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           PFV++ L+DMY + G ++ A   FD +     ++W SL++ +G HGLG  A   F++M  
Sbjct: 279 PFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVD 338

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            G+ P+ +TF+ LL  CSH+G+V++GL YF SM K +G+    EHY+C++DLLGRA RL 
Sbjct: 339 RGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLK 398

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           EA E I  MP EP    W + L  CRIH + E+G+LAA +L++LE +  G+  LLSNIYA
Sbjct: 399 EAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYA 458

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
           N  +W+DV  +R  M+   VKK PG SWV     T  F   D +HP+   IYE L  L+ 
Sbjct: 459 NERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLD 518

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           +IKA GYVP+T     D+DD  K  LL  HSE++A+A+ +++   G PI + KNLR+C D
Sbjct: 519 QIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVD 578

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CHSAI FIS +   +II+RD++RFHHF +GSC+C  YW
Sbjct: 579 CHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 217/471 (46%), Gaps = 29/471 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I    +      A R F  M   G  P ++ F   ++AC  L S   G  +H +  
Sbjct: 9   WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLAL 68

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G  S +FV + L  MY++C  +  A ++F+EM      D VSW  ++  Y++ G+ E 
Sbjct: 69  KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM---PCKDEVSWTAMIDGYSKIGEFEE 125

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L+ F +M  D +V  D   L + L AC +L     G+        K  FE     D+  
Sbjct: 126 ALLAFKKMI-DEEVTIDQHVLCSTLGACGALKACKFGRSV-HSSVVKLGFE----SDIFV 179

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA+   YS+ G  E A  +F     ++   NVV+++ +I GY +     + L VF +++
Sbjct: 180 GNALTDMYSKAGDMESASNVFG---IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 236

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+EPN  T  SL+  CA+  AL  G + H   +K  ++ D    +D  V + L+DMY 
Sbjct: 237 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK--INFD----EDPFVSSILVDMYG 290

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  ++ A   FD I         W  ++  + Q+G   DA+ +F +M   D+ VKPNA 
Sbjct: 291 KCGLLEQAIQAFDEIGDPTE--IAWNSLVSVFGQHGLGKDAIKIFERMV--DRGVKPNAI 346

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDTARVVF 520
           T    L  C+    +  G   + Y +   Y  ++P     +C+ID+  R+G +  A+   
Sbjct: 347 TFISLLTGCSHAGLVEEGLD-YFYSMDKTYG-VVPGEEHYSCVIDLLGRAGRLKEAKEFI 404

Query: 521 DNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           + +  + N   W S +    +HG  +    A +++ K  L P     LVLL
Sbjct: 405 NRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGALVLL 453



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 23/265 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  +  LI   V     +    +F+++ R+G  P+E+TF  ++KAC    +   G+ +H
Sbjct: 208 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 267

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +    FD + FV + L+ MY +C  L  A Q FDE+  P     ++WN++V+ + Q G
Sbjct: 268 AQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDP---TEIAWNSLVSVFGQHG 324

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM-KV 277
             +  + +F RM  D  V+ + ++ ++ L+ C+           G++EE    F  M K 
Sbjct: 325 LGKDAIKIFERMV-DRGVKPNAITFISLLTGCS---------HAGLVEEGLDYFYSMDKT 374

Query: 278 KDVVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
             VV     ++ ++    R G  ++A     +M  E    N   W + +   A R HG +
Sbjct: 375 YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEP---NAFGWCSFLG--ACRIHGDK 429

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLS 358
            +      +   LEP     + LLS
Sbjct: 430 EMGKLAAEKLVKLEPKNSGALVLLS 454



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 38/294 (12%)

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            R++ +WT MI   SQN   ++A+  F  M    ++  P  F  S A+ ACA L ++  G
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV--PTQFAFSSAIRACASLGSIEMG 60

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +Q+H   L+      + FV + L DMYS+ G +  A  VF+ +  ++ VSWT+++ GY  
Sbjct: 61  KQMHCLALKFGIGSEL-FVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKY---- 585
            G  ++A  AF +M  E +  D       L AC            HS +V  G +     
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 586 -------------FDSMSKEFGISARAEH---YACIVDLLGRANRLDEAVEL---IEGMP 626
                         +S S  FGI +   +   Y C++D      ++++ + +   +    
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAG 679
           +EP    + +L+  C   A +E G     +++++  ++D    ++L ++Y   G
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 293



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + QRN+VSWT++++G   +    +A   F  MR  G  P    F   + AC+  G ++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            K    ++ +FGI +     + + D+  +   + +A ++ E MP +   + W A+++G  
Sbjct: 61  -KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDGYS 118

Query: 643 IHANVELGELAANRLLELE 661
                E   LA  ++++ E
Sbjct: 119 KIGEFEEALLAFKKMIDEE 137


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/734 (33%), Positives = 398/734 (54%), Gaps = 25/734 (3%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F  N +IR      LP  A   +  M+  G  PD +TFP V+K C  L     G + H +
Sbjct: 73  FLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGM 132

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   G + +V+ CN+L+A YA+   +  A ++FD M    + DIV+WN +V  Y  +G  
Sbjct: 133 VIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGM---PVRDIVTWNIMVDGYVSNGLG 189

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L  F  M   ++VQ D V ++ AL+AC    +  +GK     E    V      +D+
Sbjct: 190 SLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGK-----EIHGYVIRHGLEQDI 244

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               +++  Y + G    A ++F  M    V    VTW+ +I GYA      EA D F Q
Sbjct: 245 KVGTSLLDMYCKCGEVAYARSVFATMPLRTV----VTWNCMIGGYALNERPDEAFDCFMQ 300

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  GL+  VVT ++LL+ CA   + L G+  H Y ++R           +++  AL++M
Sbjct: 301 MRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRR------QFLPHVVLETALLEM 354

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y K   V+ +  +F  IA  N+ + +W  MI +Y       +A+ LF ++  Q   + P+
Sbjct: 355 YGKVGKVESSEKIFGKIA--NKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQP--LYPD 410

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            FT+S  + A   L +LR  RQIH+Y++   Y      + N ++ MY+RSGD+  +R +F
Sbjct: 411 YFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENT-LIMNAVLHMYARSGDVVASREIF 469

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D +  ++V+SW +++ GY +HG G  A   FD+M+  GL P+  TF+ +L ACS SG+VD
Sbjct: 470 DKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVD 529

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G  +F+ M +E+G+  + EHY C+ DLLGR   L E ++ IE MP++PT  +W +LL  
Sbjct: 530 EGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTA 589

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            R   ++++ E AA R+ +LE +  G Y +LS++YA+AGRW+DV R+R LMK  G+++  
Sbjct: 590 SRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTE 649

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
             S V+      +F  GD +H QS+ I+E+   L ++IK        S+ +         
Sbjct: 650 PISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKETDDTRNQSYPVPVA--TRTT 707

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            +  +HS +LA+ +G++++  G+PI + KN+RIC  CH A+  IS      I++ DS  +
Sbjct: 708 TMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLISRYSGRRIVVGDSKIY 767

Query: 821 HHFKEGSCTCKGYW 834
           H F +GSC C  YW
Sbjct: 768 HEFSDGSCCCGDYW 781



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 44/370 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN +I        PD AF  F+QM   G   +  T   +L AC +  SS  G SVH
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +    F  +V +  AL+ MY +   +  + ++F ++       +VSWN ++AAY    
Sbjct: 334 GYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANK---TLVSWNNMIAAYMYKE 390

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                + LF  +     +  D  ++   + A   LG+    +Q                 
Sbjct: 391 MYTEAITLFLELLNQ-PLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIM 449

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                     G +  ++++F++M  KDV+SWN M+ GY+  G  + A  +F +M+   ++
Sbjct: 450 NAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQ 509

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            N  T+ +V+   +  G   E    F  M Q  G+ P +        GC +    LLG+E
Sbjct: 510 PNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHY-----GCMTD---LLGRE 561

Query: 372 THCYTIKRVLSVDGSHPDDLM--VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
                ++ VL    S P D    V  +L+        +D+A    + I     D     +
Sbjct: 562 G---DLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYI 618

Query: 430 MIGSYSQNGG 439
           ++ S   + G
Sbjct: 619 VLSSMYADAG 628


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/667 (37%), Positives = 366/667 (54%), Gaps = 111/667 (16%)

Query: 174 NALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           N L+A YAR    L+ AR LFD +  P   D VS+NT+++ +  SGDA+G          
Sbjct: 101 NCLLAGYARALGRLADARHLFDRIPTP---DAVSYNTLLSCHFASGDADG---------- 147

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
                                              A+++F  M V+DVVSWN MV+G S+
Sbjct: 148 -----------------------------------ARRLFASMPVRDVVSWNTMVSGLSK 172

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G+ E+A A+F  M   N     V+W+A+++G+A       A + FR     G   + V 
Sbjct: 173 SGAVEEAKAVFLAMPVRNS----VSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVL 225

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
             +++SG   +G ++   E                                         
Sbjct: 226 WTAMVSGYMDIGNVVKAIE----------------------------------------- 244

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            F+A+  +N  + +W  ++  Y +N  A+DAL LF  M ++   V+PNA TLS  L+ C+
Sbjct: 245 YFEAMPVRN--LVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQPNASTLSSVLLGCS 301

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPF-----VANCLIDMYSRSGDIDTARVVFDNLKQRN 527
            L+AL FG+QIH      Q+ M +P      V   L+ MY + GD+ +A  +F  +  R+
Sbjct: 302 NLSALGFGKQIH------QWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRD 355

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VV+W ++++GY  HG G +A   F++M+ EG+ P+ +TF+ +L AC H+G+ D G++ F+
Sbjct: 356 VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFE 415

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            M + +GI  R +HY+C+VDLL RA +L+ AV+LI  MP EP P  +  LL  CR++ N+
Sbjct: 416 GMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNL 475

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           E  ELAA +L+E + +  G+Y  L+NIYA A +W DV+R+R  MK   V K PG SW++ 
Sbjct: 476 EFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 535

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
           K     F   DR HPQ   I+E L  L +R+KAMGYVP   F LHDVD+  K  +L  HS
Sbjct: 536 KGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHS 595

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLA+++G+++TAPG  +RI KNLR+CGDCH+A   IS I + EIILRD+ RFHHF+ G 
Sbjct: 596 EKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGH 655

Query: 828 CTCKGYW 834
           C+C  YW
Sbjct: 656 CSCGDYW 662



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 11/209 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA++   V+    D+A RLF  M+R     P+  T   VL  C  L +   G  +H   
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 316

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                  N+ V  +L++MY +C  LS A +LF EM      D+V+WN +++ YAQ GD +
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR---DVVAWNAMISGYAQHGDGK 373

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDV 280
             + LF RM  D  V+ + ++ V  L+AC   G    G +C   M+E   +  R     V
Sbjct: 374 EAINLFERMK-DEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPR-----V 427

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
             ++ MV    R G  E A  L + M  E
Sbjct: 428 DHYSCMVDLLCRAGKLERAVDLIRSMPFE 456


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 346/578 (59%), Gaps = 20/578 (3%)

Query: 261 QCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           Q   +E+A+K+   +       D    N+++  Y +  S  DA  +F +MR++++    V
Sbjct: 63  QSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDM----V 118

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+++IAGYAQ     EA+ +   M     +PN  T  SLL    +      G++ H   
Sbjct: 119 SWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALA 178

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K      G H +D+ V +AL+DMYA+C  +D+A  +FD +  KN    +W  +I  +++
Sbjct: 179 VKC-----GWH-EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG--VSWNALISGFAR 230

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G    AL  F +M +     +   FT S    + ARL AL  G+ +HA+V++++ + L 
Sbjct: 231 KGDGESALMTFAEMLRNG--FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSR-QKLT 287

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
            FV N L+DMY++SG +  AR VFD +  +++V+W S++T +  +GLG +A   F++MRK
Sbjct: 288 AFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRK 347

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            G+  + +TFL +L ACSH G+V +G +YF+ M KE+ +    +HY  +V LLGRA  L+
Sbjct: 348 SGVYLNQITFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALLGRAGLLN 406

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
            A+  I  MPMEPT  +W ALL  CR+H N ++G+ AA+ + EL+ +  G   LL NIYA
Sbjct: 407 YALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYA 466

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
           + G+W   AR+R +MK TGVKK P CSWV+ +     F   D THPQ+++IY++   + +
Sbjct: 467 STGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISK 526

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           +I+  GYVP   + L  VDD+EK   L  HSEKLALA+ ++    G  IRI KN+RICGD
Sbjct: 527 KIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGD 586

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CHSA  +IS +   EI++RD+NRFHHF  GSC+C  YW
Sbjct: 587 CHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 213/456 (46%), Gaps = 59/456 (12%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P    +   + AC +  +      +HA + SS F  + F+ N+L+ MY +C ++  AR +
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSG-DAEGGLMLFARMTGDVKVQG-DGVSLVNALSAC 250
           FD+M +    D+VSW +++A YAQ+    E   +L   + G  K  G    SL+ A  A 
Sbjct: 109 FDQMRRK---DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 251 ASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
           A  GT   G+Q       CG  E            DV   +A++  Y+R G  + A A+F
Sbjct: 166 ADSGT---GRQIHALAVKCGWHE------------DVYVGSALLDMYARCGKMDMATAVF 210

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            K+  +N     V+W+A+I+G+A++G G  AL  F +M   G E    T  S+ S  A +
Sbjct: 211 DKLDSKN----GVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARL 266

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
           GAL  GK  H + IK    +         V N L+DMYAK  S+  AR +FD +   N+D
Sbjct: 267 GALEQGKWVHAHVIKSRQKLTA------FVGNTLLDMYAKSGSMIDARKVFDRV--DNKD 318

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           + TW  M+ +++Q G   +A++ F +M +    V  N  T  C L AC+    ++ G++ 
Sbjct: 319 LVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG--VYLNQITFLCILTACSHGGLVKEGKRY 376

Query: 484 HAYVLRNQYEMLIPFVANCLIDMY-------SRSGDIDTARV-VFDNLKQRNVVSWTSLM 535
                   +EM+  +     ID Y        R+G ++ A V +F    +     W +L+
Sbjct: 377 --------FEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALL 428

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
               MH       +A D + +  L PD     VLLY
Sbjct: 429 AACRMHKNAKVGQFAADHVFE--LDPDDSGPPVLLY 462



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 172/388 (44%), Gaps = 64/388 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +LI    +  +P  A  L   M++  + P+ +TF  +LKA G    S  G  +HA+  
Sbjct: 120 WTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAV 179

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+  +V+V +AL+ MYARC  +  A  +FD++      + VSWN +++ +A+ GD E 
Sbjct: 180 KCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK---NGVSWNALISGFARKGDGES 236

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            LM FA M  +   +    +  +  S+ A LG   +GK                      
Sbjct: 237 ALMTFAEMLRN-GFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLL 295

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G M +A+KVF+R+  KD+V+WN+M+T +++ G  ++A + F++MR+  V LN +
Sbjct: 296 DMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQI 355

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLLS--------------- 358
           T+  ++   +  G   E    F  M+   LEP +   VT+V+LL                
Sbjct: 356 TFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKM 415

Query: 359 ----GCASVGALLLGKETHC------YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
                 A  GALL     H       +    V  +D   PDD      L ++YA     D
Sbjct: 416 PMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELD---PDDSGPPVLLYNIYASTGQWD 472

Query: 409 VA---RVMFDAIAPKNRDVATWTVMIGS 433
            A   R+M      K     +W  M  S
Sbjct: 473 AAARVRMMMKTTGVKKEPACSWVEMENS 500


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/683 (36%), Positives = 375/683 (54%), Gaps = 46/683 (6%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N L++ + R   +  AR LF++M  PG+     +  ++  YA  G  E  L LF  M   
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGV---NLYTMMIGGYADEGRLEDALKLFYEM--P 108

Query: 234 VKVQGDGVSLVNALSACASLG------------------TWSRG----KQCGMMEEAKKV 271
           VK   D +S  + L  C   G                  +W+       + G +E A+ +
Sbjct: 109 VK---DLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECL 165

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F  M  KDV +WN+MV G+   G  EDA  LF+KM   NV    ++W++VI G    G  
Sbjct: 166 FRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNV----ISWTSVIGGLDHNGRS 221

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            EAL VF +M     +    TL   L+ CA++    +G + H   +K        +  + 
Sbjct: 222 FEALVVFHKM-LASFKATSSTLACALTACANICTPFIGVQIHGLIVKT------GYCFNE 274

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            +  +LI  YA CK +D A  +F+     +R+V  WT ++  Y  N    DAL +F  M 
Sbjct: 275 YISASLISFYANCKLIDNASSIFNDNV--SRNVVVWTALLTGYGLNCRHTDALQVFKGMM 332

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           +   L  PN  +L+ AL +C  L A+  GR++HA   +   E  I FV+N L+ MY++ G
Sbjct: 333 RMSVL--PNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDI-FVSNSLVVMYTKCG 389

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            I+    VF  + ++NVVSW S++ G   HG G  A   F QM +  + PD +T   LL 
Sbjct: 390 HINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLS 449

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           AC HSGM+ +G  +F    K FGI    EHY+ +VDLLGR  +L+EA  LI  MP +   
Sbjct: 450 ACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANY 509

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
           ++W+ALL+    H+NV + E AA  +L+L+     +YTLLSN+YA+ G+W +V++IR  M
Sbjct: 510 MVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKM 569

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
           K  G+ K+PG SW+  K     F  GD++HP S+KIY+ L  L  ++K +GYVP   F+ 
Sbjct: 570 KDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKFSF 629

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           HDV+ E+K ++L  HSE+LA+ +G+++T  G+ I + KNLRICGDCH+A+   S ++  E
Sbjct: 630 HDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTSKVVGRE 689

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           I++RD +RFHHF  G+C+C  YW
Sbjct: 690 IVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 18/299 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  + S+     A+ L +++     +V  W ++I           A  +F +M+   + 
Sbjct: 180 MVHGFFSNGRVEDAIELFEKMPNR--NVISWTSVIGGLDHNGRSFEALVVFHKMLA-SFK 236

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
               T    L AC  + +   G  +H +I  +G+  N ++  +L++ YA C  +  A  +
Sbjct: 237 ATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSI 296

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F++       ++V W  ++  Y  +      L +F  M   + V  +  SL +AL++C  
Sbjct: 297 FNDNVSR---NVVVWTALLTGYGLNCRHTDALQVFKGMM-RMSVLPNQSSLTSALNSCCG 352

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           L    RG+      E   V  ++ ++ D+   N++V  Y++ G   D  A+F +M ++  
Sbjct: 353 LEAVDRGR------EVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRK-- 404

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
             NVV+W+++I G AQ G G  AL +F QM    ++P+ +TL  LLS C   G L  G+
Sbjct: 405 --NVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGR 461



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 22/288 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V W   L    +  R  D A ++F  MMR    P++ +    L +C  L +   G  VHA
Sbjct: 306 VVWTALLTGYGLNCRHTD-ALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHA 364

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           V    G +S++FV N+L+ MY +C  ++    +F  M +    ++VSWN+I+   AQ G 
Sbjct: 365 VAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRK---NVVSWNSIIVGCAQHGF 421

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L LFA+M    +V  D ++L   LSAC   G  ++G+ C      K     M  + 
Sbjct: 422 GRWALTLFAQMI-RTRVDPDEITLAGLLSACGHSGMLTKGR-CFFKHFGKNFGIEMTNEH 479

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
              +++MV    R G  E+A AL   M     K N + W A+++        H  + V  
Sbjct: 480 ---YSSMVDLLGRYGQLEEAEALIHIMPG---KANYMVWLALLSSSIN----HSNVHVAE 529

Query: 340 QMQFC--GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           +   C   L+PN     +LLS   +      GK T    I++ +  +G
Sbjct: 530 RAAKCVLDLQPNCSAAYTLLSNLYAS----TGKWTEVSKIRKKMKDEG 573



 Score = 45.1 bits (105), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           +N L+  + R+G ID AR +F+ +    V  +T ++ GY   G  + A   F +M     
Sbjct: 53  SNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMP---- 108

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
             D +++  +L  C   G +      FD MS+   +S     +  I++ L    R++ A 
Sbjct: 109 VKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVS-----WTTIINGLLEFGRVEVAE 163

Query: 620 ELIEGMPMEPTPIIWVALLNGC----RIHANVELGELAANR 656
            L   MP +     W ++++G     R+   +EL E   NR
Sbjct: 164 CLFRVMPTKDVT-AWNSMVHGFFSNGRVEDAIELFEKMPNR 203


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/767 (33%), Positives = 392/767 (51%), Gaps = 86/767 (11%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F WN ++   +R    ++A  LF +M        + T   +L+ACG+L +   G  +H  
Sbjct: 198 FLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGY 257

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD-------------------------- 194
           +   G  SN  +CN++++MY+R + L  AR  FD                          
Sbjct: 258 VIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGA 317

Query: 195 -----EMFQPGI-CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
                EM   G+  DI++WN++++ +   G  E  L  F R       + D  S+ +AL 
Sbjct: 318 WDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNF-RSLQSAGFKPDSCSITSALQ 376

Query: 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           A   LG ++ GK      E      R K++ DV    ++V  Y +    + A  +F   +
Sbjct: 377 AVIGLGCFNLGK------EIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTK 430

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            +N+      W+++I+GY  +G    A  +  QM+  G++P++VT  SL+SG        
Sbjct: 431 NKNI----CAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSG-------- 478

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
                         S+ G   + L VIN               R+    + P   +V +W
Sbjct: 479 -------------YSMSGRSEEALAVIN---------------RIKSLGLTP---NVVSW 507

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T MI    QN    DAL  F QM  Q++ VKPN+ T+   L ACA  + L+ G +IH + 
Sbjct: 508 TAMISGCCQNENYMDALQFFSQM--QEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFS 565

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +R+ +   I ++A  LIDMY + G +  A  VF N+K++ +  W  +M GY ++G G++ 
Sbjct: 566 MRHGFLDDI-YIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEV 624

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              FD+MRK G+ PD +TF  LL  C +SG+V  G KYFDSM  ++ I+   EHY+C+VD
Sbjct: 625 FTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVD 684

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LLG+A  LDEA++ I  +P +    IW A+L  CR+H ++++ E+AA  LL LE     +
Sbjct: 685 LLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSAN 744

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y L+ NIY+   RW DV R++  M   GVK     SW+Q K+    F    ++HP+  +I
Sbjct: 745 YALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEI 804

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
           Y  L  L+  IK +GYV   +    ++DD EK  +L  H+EKLA+ YG++ T  G+PIR+
Sbjct: 805 YFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGGSPIRV 864

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KN RIC DCH+   +IS+  N EI LRD  RFHHF  G C+CK  W
Sbjct: 865 VKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGECSCKDRW 911



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 156/322 (48%), Gaps = 17/322 (5%)

Query: 270 KVFERMKVKDVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ- 327
           ++ +  K +++V+ + +M+  Y + G FE A  +F          N + W++ I  +A  
Sbjct: 53  QIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFV----GFARNYLLWNSFIEEFASF 108

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G  HE L VF+++   G++ +   L  +L  C ++  L LG E H   +KR   V    
Sbjct: 109 GGDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHV---- 164

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             D+ +  ALI++Y K   +D A  +FD   P   D   W  ++ +  ++    DAL LF
Sbjct: 165 --DVHLSCALINLYEKYLGIDGANQVFDE-TPLQEDF-LWNTIVMANLRSEKWEDALELF 220

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
            +M  Q    K    T+   L AC +L AL  G+QIH YV+R    +    + N ++ MY
Sbjct: 221 RRM--QSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFG-RVSNTSICNSIVSMY 277

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
           SR+  ++ ARV FD+ +  N  SW S+++ Y ++   + A     +M   G+ PD +T+ 
Sbjct: 278 SRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWN 337

Query: 568 VLLYACSHSGMVDQGLKYFDSM 589
            LL      G  +  L  F S+
Sbjct: 338 SLLSGHLLQGSYENVLTNFRSL 359


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/694 (36%), Positives = 374/694 (53%), Gaps = 62/694 (8%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+AC +  S      +H     +  +++  V + L  +Y  C+ +  AR+LFDE+  P 
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           +   + WN I+ AYA +G  +G + L+  M   + V+ +  +    L AC+ L     G 
Sbjct: 74  V---ILWNQIIRAYAWNGPFDGAIDLYHSML-HLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +   +    K+F      DV    A+V  Y++ G   +A  LF  M   +V    V W+A
Sbjct: 130 E---IHSHAKMFGLES--DVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV----VAWNA 180

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +IAG +  G   +A+ +  QMQ  G+ PN  T+V +L                       
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL----------------------- 217

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                                  C+ +  AR +FD +  +N    +W+ MIG Y  +   
Sbjct: 218 ---------------------PTCQCLLYARKIFDVMGVRNE--VSWSAMIGGYVASDCM 254

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL +F  M  Q   + P+  T+   L AC+ LAAL+ G   H Y++   +      + 
Sbjct: 255 KEALDIFRMM--QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT-DTLIC 311

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LIDMYS+ G I  AR VF+ + + ++VSW +++ GYG+HGLG +A   F  +   GL 
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD +TF+ LL +CSHSG+V +G  +FD+MS++F I  R EH  C+VD+LGRA  +DEA  
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 431

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
            I  MP EP   IW ALL+ CRIH N+ELGE  + ++  L  E  G++ LLSNIY+ AGR
Sbjct: 432 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGR 491

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W D A IR   K  G+KK PGCSW++       F  GD++H Q  +I   L  L+  +K 
Sbjct: 492 WDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKR 551

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
           +GY  + SF   DV++EEK  +L  HSEKLA+A+GIL    G PI +TKNLR+CGDCH+A
Sbjct: 552 LGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTA 611

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I F+++I   EI +RD+NRFHHFK G+C C  +W
Sbjct: 612 IKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 250/534 (46%), Gaps = 80/534 (14%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           Q KSLT+   IHQ  + +N ++   S    L   Y+S N    A  L   I P+P SV  
Sbjct: 20  QSKSLTEAKKIHQHFL-KNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI-PNP-SVIL 76

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +IR        D A  L+  M+  G  P++YT+PFVLKAC  L +   G  +H+   
Sbjct: 77  WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +S+VFVC AL+  YA+C  L  A++LF  M      D+V+WN ++A  +  G  + 
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR---DVVAWNAMIAGCSLYGLCDD 193

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + L  +M  +  +  +  ++V  L  C          QC +   A+K+F+ M V++ VS
Sbjct: 194 AVQLIMQMQEE-GICPNSSTIVGVLPTC----------QCLLY--ARKIFDVMGVRNEVS 240

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           W+AM+ GY      ++A  +F                                   R MQ
Sbjct: 241 WSAMIGGYVASDCMKEALDIF-----------------------------------RMMQ 265

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G++P++ T++ +L  C+ + AL  G  +H Y I R  +       D ++ NALIDMY+
Sbjct: 266 LSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT------DTLICNALIDMYS 319

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  AR +F+ +     D+ +W  MI  Y  +G   +AL LF  +      +KP+  
Sbjct: 320 KCGKISFAREVFNRM--DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG--LKPDDI 375

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           T  C L +C+    +  GR     + R+    ++P + +  C++D+  R+G ID A    
Sbjct: 376 TFICLLSSCSHSGLVMEGRLWFDAMSRDFS--IVPRMEHCICMVDILGRAGLIDEAHHFI 433

Query: 521 DNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            N+  + +V  W++L++   +H    LG++        + + L P+     VLL
Sbjct: 434 RNMPFEPDVRIWSALLSACRIHKNIELGEEV-----SKKIQSLGPESTGNFVLL 482



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 27/266 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   V       A  +F  M   G  PD  T   VL AC  L + + G   H  + 
Sbjct: 241 WSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 300

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GF ++  +CNAL+ MY++C  +S+AR++F+ M +    DIVSWN ++  Y   G    
Sbjct: 301 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH---DIVSWNAMIIGYGIHGLGME 357

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
            L LF  +   + ++ D ++ +  LS+C+           G++ E +  F+ M      V
Sbjct: 358 ALGLFHDLLA-LGLKPDDITFICLLSSCS---------HSGLVMEGRLWFDAMSRDFSIV 407

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL-- 335
             +     MV    R G  ++A    + M  E    +V  WSA+++  A R H +  L  
Sbjct: 408 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP---DVRIWSALLS--ACRIHKNIELGE 462

Query: 336 DVFRQMQFCGLEP--NVVTLVSLLSG 359
           +V +++Q  G E   N V L ++ S 
Sbjct: 463 EVSKKIQSLGPESTGNFVLLSNIYSA 488


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/644 (36%), Positives = 355/644 (55%), Gaps = 32/644 (4%)

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD-GVSLVNALSACASLGTWSRGKQCGMM 265
           W   + A A  G     + LF RM      +     SL  AL +CA+LG  + G     +
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIG-SFED--------------AFALFKKMRQEN 310
                 F      D  + NA++  Y ++  S+ D              AF   +K+  E 
Sbjct: 76  AIRSGAF-----ADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEM 130

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           ++ +VV+W+ ++ G A+ G  HEAL   R+M   G  P+  TL ++L   A    +  G 
Sbjct: 131 IERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGL 190

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           E H +  +           D+ V ++LIDMYA C   D +  +FD +    RD   W  +
Sbjct: 191 EVHGFAFRNGFD------SDVFVGSSLIDMYANCTRTDYSVKVFDNLPV--RDHILWNSL 242

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           +   +QNG   +AL +F +M Q    V+P   T S  +  C  LA+LRFG+Q+HAYV+  
Sbjct: 243 LAGCAQNGSVEEALGIFRRMLQAG--VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICG 300

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
            +E  + F+++ LIDMY + G+I  A  +FD +   +VVSWT+++ GY +HG   +A   
Sbjct: 301 GFEDNV-FISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVL 359

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F++M      P+ +TFL +L ACSH+G+VD+G KYF SMS  +GI    EH+A + D LG
Sbjct: 360 FERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLG 419

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA  LDEA   I  M ++PT  +W  LL  CR+H N  L E  A +++ELE    GS+ +
Sbjct: 420 RAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVV 479

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSN+Y+ +GRW + A +R  M+  G+KK P CSW++ K     F   DR+HP   +I + 
Sbjct: 480 LSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDA 539

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L    +++   G+VP T     D+++E K  +L  HSEKLA+ +GI++T  GT IR+ KN
Sbjct: 540 LNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKN 599

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCH+   FIS + + EI++RD+NRFHHFK+G+C+C  +W
Sbjct: 600 LRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 208/490 (42%), Gaps = 103/490 (21%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY---TFPFVLKACGELPSSRCGSSVHA 159
           W   IR A       +A  LFL+M R    P      + P  LK+C  L  S  G+S+HA
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRM-RASAAPRSSVPASLPAALKSCAALGLSALGASLHA 74

Query: 160 VICSSGFDSNVFVCNALMAMYAR--CDTL-----------------SYARQLFDEMFQPG 200
           +   SG  ++ F  NAL+ +Y +  C  L                    R++FDEM +  
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIER- 133

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             D+VSWNT+V   A+ G     L    +M  +   + D  +L   L   A      RG 
Sbjct: 134 --DVVSWNTLVLGCAEEGRHHEALGFVRKMCRE-GFRPDSFTLSTVLPIFAECADVKRGL 190

Query: 261 Q--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           +                          C   + + KVF+ + V+D + WN+++ G ++ G
Sbjct: 191 EVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNG 250

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           S E+A  +F++M Q                                    G+ P  VT  
Sbjct: 251 SVEEALGIFRRMLQ-----------------------------------AGVRPVPVTFS 275

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SL+  C ++ +L  GK+ H Y I       G   D++ + ++LIDMY KC  + +A  +F
Sbjct: 276 SLIPVCGNLASLRFGKQLHAYVIC------GGFEDNVFISSSLIDMYCKCGEISIAHCIF 329

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D ++  + DV +WT MI  Y+ +G A +AL LF +M   +   KPN  T    L AC+  
Sbjct: 330 DKMS--SPDVVSWTAMIMGYALHGPAREALVLFERMELGN--AKPNHITFLAVLTACSHA 385

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-W 531
             +  G + +   + N Y  ++P + +   L D   R+G++D A      ++ +   S W
Sbjct: 386 GLVDKGWK-YFKSMSNHYG-IVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVW 443

Query: 532 TSLMTGYGMH 541
           ++L+    +H
Sbjct: 444 STLLRACRVH 453



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 192/460 (41%), Gaps = 59/460 (12%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN L+           A     +M R G+ PD +T   VL    E    + G  VH 
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHG 194

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               +GFDS+VFV ++L+ MYA C    Y+ ++FD +    + D + WN+++A  AQ+G 
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNL---PVRDHILWNSLLAGCAQNGS 251

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
            E  L +F RM     V+   V+  + +  C +L +   GKQ                  
Sbjct: 252 VEEALGIFRRML-QAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISS 310

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG +  A  +F++M   DVVSW AM+ GY+  G   +A  LF++M   N K 
Sbjct: 311 SLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKP 370

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           N +T+ AV+   +  G   +    F+ M    G+ P +    +L       G L    E 
Sbjct: 371 NHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGEL---DEA 427

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP-KNRDVATWTVMI 431
           + +  K  +    S      V + L+      K+  +A  +   I   + R + +  V+ 
Sbjct: 428 YNFISKMQIKPTAS------VWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLS 481

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             YS +G  N+A  L   M ++     P          AC+    +    ++H +V  ++
Sbjct: 482 NMYSASGRWNEAAHLRESMRKKGMKKDP----------ACSW---IEVKSKLHVFVAHDR 528

Query: 492 ----YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
               Y+ +I  + N   +  +R G +     VF ++++ +
Sbjct: 529 SHPWYDRIIDAL-NAFSEQMAREGHVPNTEDVFQDIEEEH 567


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/548 (41%), Positives = 326/548 (59%), Gaps = 31/548 (5%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN--VVTLVSLLSGCASVGALLLGKE 371
           N+  ++A++  ++Q    H  +  F         PN    T  S+L  CA +  +L G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 372 THCYTIK----RVLSVDGSHPD---------------DLMVI------NALIDMYAKCKS 406
            HC+  K      L V  S  D               D MV+      N LI  Y     
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           VD AR++FD +  KN  + +W+ MI  Y++N    DA+ LF QM Q +  + PN  TL  
Sbjct: 209 VDKARMVFDGMMEKN--LVSWSTMISGYARNEKYADAIELFRQM-QHEGGLAPNDVTLVS 265

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L ACA L AL  G+ IH ++ RN+ E+ + F+ N L DMY++ G +  A+ VF  + +R
Sbjct: 266 VLSACAHLGALDLGKWIHRFIRRNKIEVGL-FLGNALADMYAKCGCVLEAKGVFHEMHER 324

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           +V+SW+ ++ G  M+G  ++A   F +M ++GL P+ ++F+ LL AC+H+G+VD+GL+YF
Sbjct: 325 DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYF 384

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           D M + +GI+ + EHY C+VDLL RA RLD+A  LI  MPM+P  I+W ALL GCRI+ +
Sbjct: 385 DMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKD 444

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
            E GE    R+LEL+S   GS   L+N+YA+ GR  D A  R  M+     K PGCSW++
Sbjct: 445 AERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIE 504

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
                  FF+GD +HPQS +IY ++  L  ++K  GY P+T   +H++D+EEK D L  H
Sbjct: 505 INNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTH 564

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEKLALA+G++ T+ GT IRI KNLR+C DCH AI  IS I+  EI++RD +RFHHFK+G
Sbjct: 565 SEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDG 624

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 625 KCSCNDYW 632



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 193/471 (40%), Gaps = 109/471 (23%)

Query: 38  KITSLLLRQCKSLT--QVYLIHQQIIVQNLTHVPPSHLIAAYV----SHNAPSPALSLLQ 91
           K   LLLR    L+  Q++ I  QII   +  + P+ +   ++    SH     ++ +  
Sbjct: 23  KTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFN 82

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQ--MMRRGWHPDEYTFPFVLKACGELP 149
                P ++F +NAL++   +          F    ++    +PDEYTF  VLKAC  L 
Sbjct: 83  HFLSFP-NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLA 141

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
               G  VH  +   G +SN+FV N+L+ +Y +      A++LFDEM    + D+VSWNT
Sbjct: 142 QVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMV---VRDVVSWNT 198

Query: 210 IVAAYAQSGDAEGGLM-------------------------------LFARMTGDVKVQG 238
           +++ Y  SG  +   M                               LF +M  +  +  
Sbjct: 199 LISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAP 258

Query: 239 DGVSLVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVF 272
           + V+LV+ LSACA LG    GK                          +CG + EAK VF
Sbjct: 259 NDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVF 318

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
             M  +DV+SW+ ++ G +  G   +AF  F +M ++ ++ N +++  ++      G   
Sbjct: 319 HEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVD 378

Query: 333 EALDVFRQM-QFCG--------------------------------LEPNVVTLVSLLSG 359
           + L+ F  M Q  G                                ++PNV+   +LL G
Sbjct: 379 KGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 438

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
           C        G+      + R+L +D +H   L+    L ++YA    +D A
Sbjct: 439 CRIYKDAERGER----VVWRILELDSNHSGSLVY---LANVYASMGRLDDA 482


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/677 (38%), Positives = 390/677 (57%), Gaps = 41/677 (6%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSH-----LIAAYVSHNAPSPALSLLQRI- 93
           LL++C   KS+     IH   I   L   P SH     L AAY        A  L   + 
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELR 83

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSS 151
           +PS FS   WNA+IR      L  +A  LF+QM+  G  W PD YT+PFV+KACG+    
Sbjct: 84  NPSLFS---WNAMIRMYTNSGLSYDALGLFVQMLASGRRW-PDNYTYPFVIKACGDYLLP 139

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G+ +HA    SGFDS+ FV N+LMAMY  C  +  AR++FD M +     +VSWNT++
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRER---TLVSWNTMI 196

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
             Y ++G  +  LM+F  M G   ++ D  ++V+ L  C+ L     G++   + E K +
Sbjct: 197 NGYFKNGCVKEALMVFDWMIGK-GIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNL 255

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            E     D+  WN+++  Y++ G+ ++A  +F +M     K +VV+W+ ++ GY   G  
Sbjct: 256 GE-----DISVWNSLLDMYAKCGNMDEAQMIFYEMD----KRDVVSWTTMMNGYILNGDA 306

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
             AL + + MQF  ++PN VTL S+LS CAS+ +L  G+  H + I++ L        ++
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLE------SEV 360

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +V  ALIDMYAKC +V+++  +F   + +    A W  +I     NG +  A+ LF QM 
Sbjct: 361 IVETALIDMYAKCNNVNLSFRVFSKTSKQR--TAPWNAIISGCIHNGLSRKAIELFKQML 418

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            +   V PN  TL+  L A A L  L+  R +H Y++R+ +   I  VA  LID+YS+ G
Sbjct: 419 MEA--VDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIE-VATILIDIYSKCG 475

Query: 512 DIDTARVVFDNL--KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            +++A  +F+ +  K +++++W++++ GYGMHG G+ A   FDQM + G+ P+ +TF  +
Sbjct: 476 SLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSI 535

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L+ACSH+G+VD+GL  F  M ++  +S R +HY C++DLLGRA RL+EA ELI  M   P
Sbjct: 536 LHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRP 595

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
              +W ALL  C IH NVELGE+AA  L ELE    G+Y LL+NIY+  GRW+D   +R 
Sbjct: 596 NHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRL 655

Query: 690 LMKHTGVKKRPGCSWVQ 706
           +M + G++K P  S ++
Sbjct: 656 MMNNIGLRKTPAHSLIE 672


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/728 (35%), Positives = 391/728 (53%), Gaps = 63/728 (8%)

Query: 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC----GELPSSRCGSSVHA-VICSSGF 166
           R  L  N FR F+ + R  +   +    F  +AC     + P  +  + +H+ ++ +   
Sbjct: 9   RQILNSNKFRGFVSLTRIRFDRLKVEV-FSKEACEVILDQYPGIKTLNKLHSKIVINEHL 67

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
             +  +   LM  Y+     S AR +FD   +    ++V +N ++ +Y  +      L +
Sbjct: 68  RIDPTLAIKLMRAYSAQGETSVARYIFDRSLEK---NVVFFNVMIRSYVNNNLYVEALSI 124

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286
           F  M        D  +    L AC+ L     G Q         + +     ++   NA+
Sbjct: 125 FQVMLS-CAFNPDHYTFPCVLKACSGLDNLRVGLQV-----HDAIVKVGLDTNLFIGNAL 178

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           V  Y + G   +A  +  +M   +V    V+W++++AGYAQ G   +AL++ ++M    L
Sbjct: 179 VAMYGKCGCLREARKVLDQMPYRDV----VSWNSMVAGYAQSGQFDDALEICKEMDSLNL 234

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
             +  T+ SL                 CYT                            ++
Sbjct: 235 NHDAGTMASL-------------SPVVCYT--------------------------SLEN 255

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           V     MF+ +  KN  + +W VMI  Y  N   N+A++LF QM  ++  +KP+A T++ 
Sbjct: 256 VQYIHNMFERMTKKN--LISWNVMIAIYVNNSMPNEAVSLFLQM--EECGMKPDAVTIAS 311

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L AC  L+AL  GR++H Y+ +   +  +  + N L+DMY++ G ++ AR VFD ++ R
Sbjct: 312 LLPACGDLSALFLGRRLHKYIEKGNLQPNL-LLENALLDMYAKCGCLEEARDVFDKMRLR 370

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           +VVSWTS+M+ YG  G G  A   F +M   G  PD + F+ +L ACSH+G++DQG  YF
Sbjct: 371 DVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYF 430

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
             M++++GI  R EH+AC+VDL GRA  ++EA   I+ MPMEP   +W ALL+ CR+H+ 
Sbjct: 431 RMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSK 490

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           +++G +AA+ L +L  ++ G Y LLSNIYA AG WKDV  +R  MK  G+KK PG S V+
Sbjct: 491 MDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVE 550

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
                 TF  GD+ HPQ++ IY  L  LV ++K +GY+PQT  ALHDV+ E+K   L  H
Sbjct: 551 LNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIH 610

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEKLA+ + IL T  GTPIRITKNLR+CGDCH AI  IS I++  II+RD NRFHHF  G
Sbjct: 611 SEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNG 670

Query: 827 SCTCKGYW 834
            C+C  YW
Sbjct: 671 ICSCGDYW 678



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 21/282 (7%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L  CK +  + L H    + +L+ V        Y S        ++ +R++    ++  W
Sbjct: 223 LEICKEMDSLNLNHDAGTMASLSPV------VCYTSLENVQYIHNMFERMTKK--NLISW 274

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           N +I   V   +P+ A  LFLQM   G  PD  T   +L ACG+L +   G  +H  I  
Sbjct: 275 NVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEK 334

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
                N+ + NAL+ MYA+C  L  AR +FD+M    + D+VSW ++++AY +SG     
Sbjct: 335 GNLQPNLLLENALLDMYAKCGCLEEARDVFDKM---RLRDVVSWTSMMSAYGRSGQGYDA 391

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVS 282
           + LFA+M  D     D ++ V+ LSAC+  G   +G+    MM E   +  R++      
Sbjct: 392 VALFAKML-DSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIE-----H 445

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +  MV  + R G  E+A++  K+M  E    N   W A+++ 
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEP---NERVWGALLSA 484


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/526 (42%), Positives = 317/526 (60%), Gaps = 21/526 (3%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           NV TW+ +I GYA+  +   A   +RQM    +EP+  T   LL   +    +  G+  H
Sbjct: 82  NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIH 141

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             TI+            + V N+L+ +YA C   + A  +F+ +  K RD+  W  MI  
Sbjct: 142 SVTIR------NGFESLVFVQNSLLHIYAACGDTESAYKVFELM--KERDLVAWNSMING 193

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR---- 489
           ++ NG  N+AL LF +M  +   V+P+ FT+   L A A L AL  GR++H Y+L+    
Sbjct: 194 FALNGRPNEALTLFREMSVEG--VEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLS 251

Query: 490 -NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
            N +      V N L+D+Y++ G I  A+ VF  + +RN VSWTSL+ G  ++G G++A 
Sbjct: 252 KNSH------VTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEAL 305

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F +M  +GL P  +TF+ +LYACSH GM+D+G +YF  M +E GI  R EHY C+VDL
Sbjct: 306 ELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDL 365

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           L RA  + +A E I+ MP++P  +IW  LL  C IH ++ LGE+A + LL LE +  G Y
Sbjct: 366 LSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDY 425

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LLSN+YA+  RW DV  IR  M   GVKK PG S V+       F +GDR+HPQSQ +Y
Sbjct: 426 VLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVY 485

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
            +L  + + +K  GYVP T+  L D+++EEK   L  HSEK+A+A+ +L T PGTPIR+ 
Sbjct: 486 ALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVM 545

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCH AI  I+ I + EI++RD +RFHHF+ GSC+CK YW
Sbjct: 546 KNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 186/357 (52%), Gaps = 24/357 (6%)

Query: 21  HLFTNIKLFSVTTTP---CIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP---SHLI 74
           H+ TN     V+TTP     K  SLL     S  ++  IH   I   ++   P    HLI
Sbjct: 3   HVTTNF----VSTTPENPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLI 58

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
              VS +AP      +  +  +P +VF WN +IR       P  AF  + QM+     PD
Sbjct: 59  FTIVSLSAPMSYAYNVFTVIHNP-NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPD 117

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
            +T+PF+LKA  +  + R G ++H+V   +GF+S VFV N+L+ +YA C     A ++F+
Sbjct: 118 THTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFE 177

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
            M +    D+V+WN+++  +A +G     L LF  M+ +  V+ DG ++V+ LSA A LG
Sbjct: 178 LMKER---DLVAWNSMINGFALNGRPNEALTLFREMSVE-GVEPDGFTVVSLLSASAELG 233

Query: 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
               G++  +      + +    K+    N+++  Y++ G+  +A  +F +M + N    
Sbjct: 234 ALELGRRVHVY-----LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNA--- 285

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            V+W+++I G A  G G EAL++F++M+  GL P+ +T V +L  C+  G L  G E
Sbjct: 286 -VSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFE 341



 Score = 46.6 bits (109), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 105/274 (38%), Gaps = 40/274 (14%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLI-DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           +QIHA+ +R+   +  P +   LI  + S S  +  A  VF  +   NV +W +++ GY 
Sbjct: 35  KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYA 94

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKYF-- 586
                  A   + QM    + PD  T+  LL A S           HS  +  G +    
Sbjct: 95  ESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVF 154

Query: 587 --DSMSKEFGISARAEHYACIVDLLGRAN---------------RLDEAVELIEGMP--- 626
             +S+   +      E    + +L+   +               R +EA+ L   M    
Sbjct: 155 VQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEG 214

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT-LLSNIYANAGRWKDVA 685
           +EP     V+LL+       +ELG      LL++   K+   T  L ++YA  G  ++  
Sbjct: 215 VEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQ 274

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           R+ S M      +R   SW     G A    G+ 
Sbjct: 275 RVFSEM-----SERNAVSWTSLIVGLAVNGFGEE 303


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 333/551 (60%), Gaps = 18/551 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N+++T Y +   +E +  +F +M  +N     V+WSA+I    Q     E   +FRQM  
Sbjct: 49  NSLITMYGKCDKYELSRQVFDEMPDKNA----VSWSAIIGACLQDDRCKEGFSLFRQMLS 104

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G  P   +  ++L+  A V +     + +   ++  L  D S      V +A   M+A+
Sbjct: 105 EGSRP---SRGAILNAMACVRSHEEADDVYRVVVENGLDFDQS------VQSAAAGMFAR 155

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V+VAR +FD I  K  D+ TW   I +Y +     +AL L  QM  Q   + P+A T
Sbjct: 156 CGRVEVARKLFDGIMSK--DLVTWATTIEAYVKADMPLEALGLLKQMMLQG--IFPDAIT 211

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L   + AC+ LA+ +    +H  +    +   +  V   LID+Y + G +  AR VFD +
Sbjct: 212 LLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGM 271

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           ++RN+++W+++++GYGMHG G +A   FDQM K  + PD +TF+ +L ACSHSG+V +G 
Sbjct: 272 QERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGW 330

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           + F+SM+++FG++ R EHYAC+VD+LGRA +LDEA + IE MP+ P   +W ALL  CRI
Sbjct: 331 ECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRI 390

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H NV+L E+ A  L +L+    G Y +L NIY   G+ K+   IR+LMK+ GVKK  G S
Sbjct: 391 HLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYS 450

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
            ++ K     F  GDR+HPQ+  IY  L  L+ RI+  GY P  +F LHDVD+E K  +L
Sbjct: 451 VIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESML 510

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
           + HSEKLA+ +G+L   PG+ IRI KNLR+CGDCH+A  FIS +   EI++RD++RFHHF
Sbjct: 511 YLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHF 570

Query: 824 KEGSCTCKGYW 834
           K G+C+C+ YW
Sbjct: 571 KNGACSCRDYW 581



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 204/422 (48%), Gaps = 37/422 (8%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+R G  PD +TFPF++KAC  L     G  +H  +   G+ S VF+ N+L+ MY +CD 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
              +RQ+FDEM      + VSW+ I+ A  Q    + G  LF +M  +      G +++N
Sbjct: 61  YELSRQVFDEMPDK---NAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRG-AILN 116

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG-----YSRIGSFEDAF 300
           A++   S             EEA  V+ R+ V++ + ++  V       ++R G  E A 
Sbjct: 117 AMACVRS------------HEEADDVY-RVVVENGLDFDQSVQSAAAGMFARCGRVEVAR 163

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            LF  +  +    ++VTW+  I  Y +     EAL + +QM   G+ P+ +TL+ ++  C
Sbjct: 164 KLFDGIMSK----DLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRAC 219

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           +++ +  L    H      +++    +   L V  ALID+Y KC S+  AR +FD +  +
Sbjct: 220 STLASFQLAHIVH-----GIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGM--Q 272

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            R++ TW+ MI  Y  +G   +AL LF QM      VKP+  T    L AC+    +  G
Sbjct: 273 ERNIITWSAMISGYGMHGWGREALNLFDQM---KASVKPDHITFVSILSACSHSGLVAEG 329

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYG 539
            +    + R+      P    C++D+  R+G +D A    + +  R N   W +L+    
Sbjct: 330 WECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACR 389

Query: 540 MH 541
           +H
Sbjct: 390 IH 391



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 41/269 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   ++       F LF QM+  G  P       +L A   + S      V+ V+ 
Sbjct: 79  WSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA---ILNAMACVRSHEEADDVYRVVV 135

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G D +  V +A   M+ARC  +  AR+LFD +      D+V+W T + AY ++     
Sbjct: 136 ENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSK---DLVTWATTIEAYVKADMPLE 192

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGK------------------- 260
            L L  +M     +QG   D ++L+  + AC++L ++                       
Sbjct: 193 ALGLLKQMM----LQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVE 248

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG +  A+KVF+ M+ +++++W+AM++GY   G   +A  LF +M+  +VK
Sbjct: 249 TALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA-SVK 307

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            + +T+ ++++  +  G   E  + F  M
Sbjct: 308 PDHITFVSILSACSHSGLVAEGWECFNSM 336



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W   I   V+  +P  A  L  QMM +G  PD  T   V++AC  L S +    VH +I 
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT 236

Query: 163 SSGFDSNVF-VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
           +  F + +  V  AL+ +Y +C +L+YAR++FD M +    +I++W+ +++ Y   G   
Sbjct: 237 TGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQER---NIITWSAMISGYGMHGWGR 293

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDV 280
             L LF +M   VK   D ++ V+ LSAC+  G  + G +C   M     V  R +    
Sbjct: 294 EALNLFDQMKASVK--PDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPE---- 347

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
             +  MV    R G  ++A    ++M    V+ N   W A++  
Sbjct: 348 -HYACMVDILGRAGKLDEACDFIERM---PVRPNAAVWGALLGA 387



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 25/229 (10%)

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           ++P+ FT    + AC+ L    FG +IH  V++  Y+  + F++N LI MY +    + +
Sbjct: 6   IQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQV-FISNSLITMYGKCDKYELS 64

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R VFD +  +N VSW++++          +    F QM  EG  P     L  + AC  S
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-ACVRS 123

Query: 577 G---------MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
                     +V+ GL +  S+      SA A  +A       R  R++ A +L +G+ M
Sbjct: 124 HEEADDVYRVVVENGLDFDQSVQ-----SAAAGMFA-------RCGRVEVARKLFDGI-M 170

Query: 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
               + W   +    + A++ L  L   + + L+     + TLL  I A
Sbjct: 171 SKDLVTWATTIEA-YVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRA 218


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/676 (36%), Positives = 370/676 (54%), Gaps = 49/676 (7%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR +FDE  +P     V W   ++  A+ G    G+  FA M  + +   +   L   + 
Sbjct: 64  ARGVFDE--RPTRTAPV-WTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVR 120

Query: 249 ACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVS 282
            CA +G    GK                          +CG  E A++VF  M  +D VS
Sbjct: 121 CCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVS 180

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           WN  +    + G    +  LF     E+   +  +W+ +I+G  + GH  +AL   R+M 
Sbjct: 181 WNIAIGACIQSGDILGSMQLF----DESPLRDTTSWNTIISGLMRSGHAADALSHLRRMA 236

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLL---GKETHCYTIKRVLSVDGSHPDDLMVINALID 399
             G+  N  T  +        G LLL   G++ H   +  + +++G    D  V ++L+D
Sbjct: 237 QAGVVFNHYTYSTAF---VLAGMLLLPDLGRQLHGRVL--IAALEG----DAFVRSSLMD 287

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           MY KC  ++ A  +FD  +P  RD+   W+ M+  Y QNG   +AL LF +M ++   V 
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREG--VA 345

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            + FTL+    ACA +  +  GRQ+H  V +  Y++  P +A+ ++DMY++ G+++ AR 
Sbjct: 346 ADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAP-LASAIVDMYAKCGNLEDARS 404

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FD    +N+  WTS++  Y  HG G  A   F++M  E + P+ +T + +L ACSH G+
Sbjct: 405 IFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGL 464

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G  YF  M +E+GI    EHY CIVDL GR+  LD+A   IE   +    I+W  LL
Sbjct: 465 VSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLL 524

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           + CR+H + E  +LA+ +L++LE    GSY +LSNIYA   +W D   +R  M+   V+K
Sbjct: 525 SACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRK 584

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
           +PG SW+  K    TF  GD +HPQS +IY  L  LV+R+K +GY  +T   +HDV+DE+
Sbjct: 585 QPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQ 644

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEKLA+A+GI++T  GTP+RI KNLR+C DCH AI +IS+    EI++RD  
Sbjct: 645 RETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLY 704

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK+ SC+C+ +W
Sbjct: 705 RFHHFKDASCSCEDFW 720



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 226/481 (46%), Gaps = 45/481 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W   I    R     +  R F +M+  G   P+ +    V++ C  +     G  VH  +
Sbjct: 79  WTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWM 138

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +G   +V +CNA++ MYA+C     AR++F  M +    D VSWN  + A  QSGD  
Sbjct: 139 LRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAER---DAVSWNIAIGACIQSGDIL 195

Query: 222 GGLMLFARMTGDVKVQGDGV--SLVNALSACASLGTWSRGKQCGMM-------------- 265
           G + LF           + +   L+ +  A  +L    R  Q G++              
Sbjct: 196 GSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAG 255

Query: 266 -----EEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                +  +++  R+ +     D    ++++  Y + G  E A ++F         +N  
Sbjct: 256 MLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMN-F 314

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            WS ++AGY Q G   EALD+FR+M   G+  +  TL S+ + CA+VG +  G++ H   
Sbjct: 315 AWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCV 374

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K    +D        + +A++DMYAKC +++ AR +FD    KN  +A WT M+ SY+ 
Sbjct: 375 EKLWYKLDAP------LASAIVDMYAKCGNLEDARSIFDRACTKN--IAVWTSMLCSYAS 426

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G    A+ LF +M  +   + PN  TL   L AC+ +  +  G +++   ++ +Y  ++
Sbjct: 427 HGQGRIAIELFERMTAEK--MTPNEITLVGVLSACSHVGLVSEG-ELYFKQMQEEYG-IV 482

Query: 497 PFVA--NCLIDMYSRSGDIDTAR-VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           P +   NC++D+Y RSG +D A+  + +N      + W +L++   +H   + A  A ++
Sbjct: 483 PSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEK 542

Query: 554 M 554
           +
Sbjct: 543 L 543



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 175/374 (46%), Gaps = 24/374 (6%)

Query: 87  LSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           L  +Q    SP      WN +I   +R     +A     +M + G   + YT+       
Sbjct: 195 LGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLA 254

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI- 204
           G L     G  +H  +  +  + + FV ++LM MY +C  L  A  +FD  + P   D+ 
Sbjct: 255 GMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDH-WSPLTRDMN 313

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-G 263
            +W+T+VA Y Q+G  E  L LF RM  +  V  D  +L +  +ACA++G   +G+Q  G
Sbjct: 314 FAWSTMVAGYVQNGREEEALDLFRRMLRE-GVAADRFTLTSVAAACANVGMVEQGRQVHG 372

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            +E   K++ ++   D    +A+V  Y++ G+ EDA ++F +        N+  W++++ 
Sbjct: 373 CVE---KLWYKL---DAPLASAIVDMYAKCGNLEDARSIFDRA----CTKNIAVWTSMLC 422

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
            YA  G G  A+++F +M    + PN +TLV +LS C+ VG   L  E   Y  K++   
Sbjct: 423 SYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVG---LVSEGELY-FKQMQEE 478

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS---YSQNGGA 440
            G  P  +   N ++D+Y +   +D A+   +     N +   W  ++ +   +  N  A
Sbjct: 479 YGIVP-SIEHYNCIVDLYGRSGLLDKAKNFIEE-NNINHEAIVWKTLLSACRLHQHNEYA 536

Query: 441 NDALALFPQMFQQD 454
             A     Q+ Q D
Sbjct: 537 KLASEKLVQLEQCD 550



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 24/268 (8%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSV-FWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           S L+  Y        A S+    SP    + F W+ ++   V+    + A  LF +M+R 
Sbjct: 283 SSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLRE 342

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G   D +T   V  AC  +     G  VH  +    +  +  + +A++ MYA+C  L  A
Sbjct: 343 GVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDA 402

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R +FD        +I  W +++ +YA  G     + LF RMT + K+  + ++LV  LSA
Sbjct: 403 RSIFDRACTK---NIAVWTSMLCSYASHGQGRIAIELFERMTAE-KMTPNEITLVGVLSA 458

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           C+ +         G++ E +  F++M+     V  +  +N +V  Y R G  + A    +
Sbjct: 459 CSHV---------GLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIE 509

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGH 332
              + N+    + W  +++  A R H H
Sbjct: 510 ---ENNINHEAIVWKTLLS--ACRLHQH 532


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/667 (37%), Positives = 366/667 (54%), Gaps = 111/667 (16%)

Query: 174 NALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           N L+A YAR    L+ AR LFD +  P   D VS+NT+++ +  SGDA+G          
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTP---DAVSYNTLLSCHFASGDADG---------- 98

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
                                              A+++F  M V+DVVSWN MV+G S+
Sbjct: 99  -----------------------------------ARRLFASMPVRDVVSWNTMVSGLSK 123

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G+ E+A A+F  M   N     V+W+A+++G+A       A + FR     G   + V 
Sbjct: 124 SGAVEEAKAVFLAMPVRNS----VSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVL 176

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
             +++SG   +G ++   E                                         
Sbjct: 177 WTAMVSGYMDIGNVVKAIE----------------------------------------- 195

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            F+A+  +N  + +W  ++  Y +N  A+DAL LF  M ++   V+PNA TLS  L+ C+
Sbjct: 196 YFEAMPVRN--LVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQPNASTLSSVLLGCS 252

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPF-----VANCLIDMYSRSGDIDTARVVFDNLKQRN 527
            L+AL FG+QIH      Q+ M +P      V   L+ MY + GD+ +A  +F  +  R+
Sbjct: 253 NLSALGFGKQIH------QWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRD 306

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VV+W ++++GY  HG G +A   F++M+ EG+ P+ +TF+ +L AC H+G+ D G++ F+
Sbjct: 307 VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFE 366

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            M + +GI  R +HY+C+VDLL RA +L+ AV+LI  MP EP P  +  LL  CR++ N+
Sbjct: 367 GMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNL 426

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           E  ELAA +L+E + +  G+Y  L+NIYA A +W DV+R+R  MK   V K PG SW++ 
Sbjct: 427 EFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 486

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
           K     F   DR HPQ   I+E L  L +R+KAMGYVP   F LHDVD+  K  +L  HS
Sbjct: 487 KGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHS 546

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLA+++G+++TAPG  +RI KNLR+CGDCH+A   IS I + EIILRD+ RFHHF+ G 
Sbjct: 547 EKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGH 606

Query: 828 CTCKGYW 834
           C+C  YW
Sbjct: 607 CSCGDYW 613



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 11/209 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA++   V+    D+A RLF  M+R     P+  T   VL  C  L +   G  +H   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                  N+ V  +L++MY +C  LS A +LF EM      D+V+WN +++ YAQ GD +
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR---DVVAWNAMISGYAQHGDGK 324

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDV 280
             + LF RM  D  V+ + ++ V  L+AC   G    G +C   M+E   +  R     V
Sbjct: 325 EAINLFERMK-DEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPR-----V 378

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
             ++ MV    R G  E A  L + M  E
Sbjct: 379 DHYSCMVDLLCRAGKLERAVDLIRSMPFE 407


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/558 (43%), Positives = 341/558 (61%), Gaps = 18/558 (3%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D V    +V  Y+  G    A  LF  M + NV L    W+ +I  YA+ G    A+ ++
Sbjct: 96  DTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFL----WNVLIRAYARDGPHEVAIQLY 151

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDLMVINAL 397
           R M   G+EP+  T    L  CA++  L  G+E H    +RVL   G+H  +D+ V   L
Sbjct: 152 RGMVDYGVEPDNFTYPLALKACAALLDLETGREVH----ERVL---GTHWGEDMFVCAGL 204

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +DMYAKC  VD AR +FD I  + RD   W  MI +Y QNG   +AL+L   M      V
Sbjct: 205 VDMYAKCGCVDDARAVFDRI--RVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANG--V 260

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            P   TL   + A A  AAL  GR++H +  R  ++     +   L+DMY++SG +  AR
Sbjct: 261 GPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDK-LKTSLVDMYAKSGWVQVAR 319

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHS 576
           V+F+ L +R +VSW +++ GYGMHG  D+A   F++MR E  + PD +TF+ +L AC+H 
Sbjct: 320 VLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHG 379

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +  ++F  M   + I    +H+ C+VD+LG A R +EA +LI+GMPM+P   IW A
Sbjct: 380 GMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGA 439

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LLNGC+IH NVELGELA  +L+ELE E  G+Y LLSNIYA +G+W+  AR+R LM + G+
Sbjct: 440 LLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGL 499

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK  GCSW++ K  T  F VGD +HP+S +IYE L  L   +   GY+P T    HDV D
Sbjct: 500 KKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGD 559

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK +++  HSE+LA+A+G+++T  GT + +TKNLR+C DCH  I  IS I+  EII+RD
Sbjct: 560 DEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRD 619

Query: 817 SNRFHHFKEGSCTCKGYW 834
            NR+HHF  G C+CK YW
Sbjct: 620 VNRYHHFVNGECSCKDYW 637



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 209/445 (46%), Gaps = 36/445 (8%)

Query: 133 PDEYT-FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           P+ Y  +  VL++C    S   G  +H  +  SG   +  +   L+ +YA C  + +AR+
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LFD M +    ++  WN ++ AYA+ G  E  + L+  M  D  V+ D  +   AL ACA
Sbjct: 119 LFDGMPKR---NVFLWNVLIRAYARDGPHEVAIQLYRGMV-DYGVEPDNFTYPLALKACA 174

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           +L     G+     E  ++V      +D+     +V  Y++ G  +DA A+F ++R    
Sbjct: 175 ALLDLETGR-----EVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVR-- 227

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             + V W+++IA Y Q G   EAL + R M   G+ P + TLVS +S  A   AL  G+E
Sbjct: 228 --DSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRE 285

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H +  +R         D L    +L+DMYAK   V VARV+F+ +    R++ +W  MI
Sbjct: 286 LHGFGWRRGF----DRQDKLK--TSLVDMYAKSGWVQVARVLFEQLM--KRELVSWNAMI 337

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAY 486
             Y  +G  ++AL LF +M + +  V P+  T    L AC     ++     FG  +  Y
Sbjct: 338 CGYGMHGHFDEALKLFNKM-RVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVY 396

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGD 545
            ++   +        CL+D+   +G  + A  +   +  Q +   W +L+ G  +H   +
Sbjct: 397 SIKPTVQHF-----TCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVE 451

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLL 570
               A  ++ +  L P+     VLL
Sbjct: 452 LGELALQKLIE--LEPEDAGNYVLL 474



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 42/369 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +VF WN LIR   R    + A +L+  M+  G  PD +T+P  LKAC  L     G  VH
Sbjct: 127 NVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVH 186

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  + +  ++FVC  L+ MYA+C  +  AR +FD +    + D V WN+++AAY Q+G
Sbjct: 187 ERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIR---VRDSVVWNSMIAAYGQNG 243

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                L L   M  +  V     +LV+ +SA A      RG++                 
Sbjct: 244 RPMEALSLCRDMAAN-GVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLK 302

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE-NV 311
                     G ++ A+ +FE++  +++VSWNAM+ GY   G F++A  LF KMR E  V
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQV 362

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGK 370
             + +T+  V++     G   EA + F  M     ++P V     L+      G      
Sbjct: 363 TPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRF---- 418

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA-IAPKNRDVATWTV 429
               Y + + + +    PD   +  AL++     K+V++  +     I  +  D   + +
Sbjct: 419 -EEAYDLIKGMPM---QPDS-GIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVL 473

Query: 430 MIGSYSQNG 438
           +   Y+Q+G
Sbjct: 474 LSNIYAQSG 482


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/795 (33%), Positives = 409/795 (51%), Gaps = 27/795 (3%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP---PSHLIAAYVSHNAPSPALSLLQRISPSPFS 99
           L+R+C S+ +  L+H +I             S L+  Y+   +   A+ +  +I+    S
Sbjct: 35  LVRECNSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHK--S 92

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +  W  LI   V       A  LF ++++ G   D   F  VL AC        G  +H 
Sbjct: 93  IVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHR 152

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               +G      V +AL++MY RC +L  A  LF  + +    D+V WN ++ A +Q+G 
Sbjct: 153 CAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERH--LDVVLWNAMITANSQNGS 210

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L +F RM   + +  D V+ V+   AC+S  +    +  G       + E     D
Sbjct: 211 PREALEIFYRML-QLGIPPDLVTFVSVFKACSSSPSLRASQVKGFH---TCLDETGLGSD 266

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VV   A+V  Y+R G  + A   F  M + N     V+W+++IA +AQ GH   A++ F 
Sbjct: 267 VVVATALVNAYARCGEIDCAREFFAAMPERNA----VSWTSMIAAFAQIGH-LLAVETFH 321

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M   G+ P   TL + L GC         ++ H   +   ++ +     D+ ++  L+ 
Sbjct: 322 AMLLEGVVPTRSTLFAALEGC---------EDLHTARLVEAIAQEIGVATDVAIVTDLVM 372

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            YA+C   + A  +F A      D A  T MI  Y+Q         L+    ++   + P
Sbjct: 373 AYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERG--ISP 430

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +      AL ACA LAAL  GRQIHA V  ++       + N ++ MY + G +  AR  
Sbjct: 431 DRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDA 490

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +  R+ +SW ++++    HG  +     F  M +EG   + V FL LL AC+H+G+V
Sbjct: 491 FDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLV 550

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           + G ++F +M+ + G+    EHY C+VDLLGR  RL +A  +++ MP+ P    W+AL+ 
Sbjct: 551 EAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMG 610

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CRI+ + E G  AA R+LEL +    +Y  L NIY+ AGRW+D A +R +M   G++K 
Sbjct: 611 ACRIYGDTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKI 670

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG S ++ +     F V DR+HPQS+ IY  L  ++  I+  GY   T   LHDV++E+K
Sbjct: 671 PGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQK 730

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             LL  HSEKLA+A+G+++T  G+ +R+ KNLR+C DCH+A  FIS +   EI++RD  R
Sbjct: 731 EQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRR 790

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK+G+C+C  YW
Sbjct: 791 FHHFKDGACSCGDYW 805


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/687 (37%), Positives = 384/687 (55%), Gaps = 64/687 (9%)

Query: 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
           P  +   +VH+ I S     N  +   LM  YA    ++ AR++FDE+ +  +  I   N
Sbjct: 54  PDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIII---N 110

Query: 209 TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEA 268
            ++ +Y  +G    G+ +F  M     V+ D  +    L AC+  G    GK+  +   A
Sbjct: 111 VMIRSYVNNGFYREGIQVFGTMCS-CHVKPDHYTFPCVLKACSCSGNIVIGKK--IHGSA 167

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
            KV        +   N +V+ Y + G   +A  +  +M + +V    V+W++++AGYAQ 
Sbjct: 168 TKVG---LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV----VSWNSLVAGYAQN 220

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
               +AL+V R+M+   +  +  T+ SLL   ++             T + V+ V     
Sbjct: 221 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNT------------TTENVMYVK---- 264

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
                     DM+ K                  + + +W VMIG Y +N    +A+ L+ 
Sbjct: 265 ----------DMFFKMG---------------KKSLVSWNVMIGVYMKNAMPVEAVELYS 299

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDM 506
            M + D   +P+A +++  L AC   +AL  G++IH Y+ R +   LIP   + N LIDM
Sbjct: 300 GM-EADGF-EPDAVSITSVLPACGDTSALSLGKKIHGYIERKK---LIPNLLLENALIDM 354

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y++ G +D AR VF+N+K R+VVSWT++++ YG  G G  A   F +M+  GL PD + F
Sbjct: 355 YAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAF 414

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           +  L ACSH+G++++G   F  M+  + I+ R EH AC+VDLLGRA ++ EA + I+ MP
Sbjct: 415 VTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMP 474

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
           MEP   +W ALL  CR+H+N ++G LAA++L +L  E+ G Y LLSNIYA AGRW++V  
Sbjct: 475 MEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTN 534

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           IR++MK  G+KK PG S V+      TF VGDR+HPQS +IY  L  LV+++K +GYVP 
Sbjct: 535 IRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPD 594

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP---GTPIRITKNLRICGDCHSAITF 803
           +  ALHDV++E+K   L  HSEKLA+ + ++ T        IRITKNLRICGDCH A   
Sbjct: 595 SESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKL 654

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTC 830
           IS I + EII+RD+NRFH F+ G C+C
Sbjct: 655 ISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 158/542 (29%), Positives = 250/542 (46%), Gaps = 71/542 (13%)

Query: 38  KITSLLLRQC----KSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQ 91
           K T+ +L Q       L  +  +H +II ++L +       L+ AY S    + A  +  
Sbjct: 40  KETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFD 99

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
            I     +V   N +IR  V         ++F  M      PD YTFP VLKAC    + 
Sbjct: 100 EIPER--NVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNI 157

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G  +H      G  S +FV N L++MY +C  LS AR + DEM +    D+VSWN++V
Sbjct: 158 VIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR---DVVSWNSLV 214

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           A YAQ+   +  L +   M   VK+  D  ++ + L A ++  T +       +   K +
Sbjct: 215 AGYAQNQRFDDALEVCREMES-VKISHDAGTMASLLPAVSNTTTEN-------VMYVKDM 266

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F +M  K +VSWN M                                   I  Y +    
Sbjct: 267 FFKMGKKSLVSWNVM-----------------------------------IGVYMKNAMP 291

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            EA++++  M+  G EP+ V++ S+L  C    AL LGK+ H Y  ++ L        +L
Sbjct: 292 VEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKL------IPNL 345

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           ++ NALIDMYAKC  +D AR +F+ +  K+RDV +WT MI +Y  +G   DA+ALF +M 
Sbjct: 346 LLENALIDMYAKCGCLDRARDVFENM--KSRDVVSWTAMISAYGFSGRGCDAVALFSKM- 402

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSR 509
            QD  + P++      L AC+    L  GR    + L   +  + P + +  C++D+  R
Sbjct: 403 -QDSGLVPDSIAFVTTLAACSHAGLLEEGRS--CFKLMTDHYKITPRLEHLACMVDLLGR 459

Query: 510 SGDIDTA-RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           +G +  A + + +   + N   W +L+    +H   D    A D++ +  LAP+   + V
Sbjct: 460 AGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQ--LAPEQSGYYV 517

Query: 569 LL 570
           LL
Sbjct: 518 LL 519



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 119/262 (45%), Gaps = 15/262 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN +I   ++  +P  A  L+  M   G+ PD  +   VL ACG+  +   G  +H
Sbjct: 274 SLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIH 333

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I       N+ + NAL+ MYA+C  L  AR +F+ M      D+VSW  +++AY  SG
Sbjct: 334 GYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSR---DVVSWTAMISAYGFSG 390

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKV 277
                + LF++M  D  +  D ++ V  L+AC+  G    G+ C  +M +  K+  R++ 
Sbjct: 391 RGCDAVALFSKMQ-DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE- 448

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                   MV    R G  ++A+   ++M  E    N   W A++   A R H +  + +
Sbjct: 449 ----HLACMVDLLGRAGKVKEAYKFIQEMPMEP---NERVWGALLG--ACRVHSNTDIGL 499

Query: 338 FRQMQFCGLEPNVVTLVSLLSG 359
               +   L P       LLS 
Sbjct: 500 LAADKLFQLAPEQSGYYVLLSN 521


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/661 (37%), Positives = 364/661 (55%), Gaps = 61/661 (9%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           LM  Y+     S AR +FD   +    ++V +N ++ +Y  +      L +F  M     
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEK---NVVFFNVMIRSYVNNNLYVEALSIFQVMLS-CA 132

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
              D  +    L AC+ L     G Q         + +     ++   NA+V  Y + G 
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQV-----HDAIVKVGLDTNLFIGNALVAMYGKCGC 187

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
             +A  +  +M   +V    V+W++++AGYAQ G   +AL++ ++M    L  +  T+ S
Sbjct: 188 LREARKVLDQMPYRDV----VSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS 243

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           L                 CYT                            ++V     MF+
Sbjct: 244 L-------------SPVVCYT--------------------------SLENVQYIHNMFE 264

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  KN  + +W VMI  Y  N   N+A++LF QM  ++  +KP+A T++  L AC  L+
Sbjct: 265 RMTKKN--LISWNVMIAIYVNNSMPNEAVSLFLQM--EECGMKPDAVTIASLLPACGDLS 320

Query: 476 ALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           AL  GR++H Y+ +     L P   + N L+DMY++ G ++ AR VFD ++ R+VVSWTS
Sbjct: 321 ALFLGRRLHKYIEKGN---LRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTS 377

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +M+ YG  G G  A   F +M   G  PD + F+ +L ACSH+G++DQG  YF  M++++
Sbjct: 378 MMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQY 437

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI  R EH+AC+VDL GRA  ++EA   I+ MPMEP   +W ALL+ CR+H+ +++G +A
Sbjct: 438 GIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVA 497

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A+ L +L  ++ G Y LLSNIYA AG WKDV  +R  MK  G+KK PG S V+      T
Sbjct: 498 ADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHT 557

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  GD+ HPQ++ IY  L  LV ++K +GY+PQT  ALHDV+ E+K   L  HSEKLA+ 
Sbjct: 558 FLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIV 617

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           + IL T  GTPIRITKNLR+CGDCH AI  IS I++  II+RD NRFHHF  G C+C  Y
Sbjct: 618 FAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDY 677

Query: 834 W 834
           W
Sbjct: 678 W 678



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 21/282 (7%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           L  CK +  + L H    + +L+ V        Y S        ++ +R++    ++  W
Sbjct: 223 LEICKEMDSLNLNHDAGTMASLSPV------VCYTSLENVQYIHNMFERMTKK--NLISW 274

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           N +I   V   +P+ A  LFLQM   G  PD  T   +L ACG+L +   G  +H  I  
Sbjct: 275 NVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEK 334

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
                N+ + NAL+ MYA+C  L  AR +FD+M    + D+VSW ++++AY +SG     
Sbjct: 335 GNLRPNLLLENALLDMYAKCGCLEEARDVFDKM---RLRDVVSWTSMMSAYGRSGQGYDA 391

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVS 282
           + LFA+M  D     D ++ V+ LSAC+  G   +G+    MM E   +  R++      
Sbjct: 392 VALFAKML-DSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIE-----H 445

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +  MV  + R G  E+A++  K+M  E    N   W A+++ 
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEP---NERVWGALLSA 484



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           ++H+ ++ N++  + P +A  L+  YS  G+   AR +FD   ++NVV +  ++  Y  +
Sbjct: 56  KLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN 115

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
            L  +A   F  M      PD  TF  +L ACS    +  GL+  D++ K  G+      
Sbjct: 116 NLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNLFI 174

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              +V + G+   L EA ++++ MP     + W +++ G
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYRDV-VSWNSMVAG 212


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/677 (38%), Positives = 390/677 (57%), Gaps = 41/677 (6%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSH-----LIAAYVSHNAPSPALSLLQRI- 93
           LL++C   KS+     IH   I   L   P SH     L AAY        A  L   + 
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELR 83

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSS 151
           +PS FS   WNA+IR      L  +A  LF+QM+  G  W PD YT+PFV+KACG+    
Sbjct: 84  NPSLFS---WNAMIRMYTNSGLSYDALGLFVQMLASGRRW-PDNYTYPFVIKACGDYLLP 139

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G+ +HA    SGFDS+ FV N+LMAMY  C  +  AR++FD M +     +VSWNT++
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRER---TLVSWNTMI 196

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
             Y ++G  +  LM+F  M G   ++ D  ++V+ L  C+ L     G++   + E K +
Sbjct: 197 NGYFKNGCVKEALMVFDWMIGK-GIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNL 255

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            E     D+  WN+++  Y++ G+ ++A  +F +M     K +VV+W+ ++ GY   G  
Sbjct: 256 GE-----DISVWNSLLDMYAKCGNMDEAQMIFYEMD----KRDVVSWTTMMNGYILNGDA 306

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
             AL + + MQF  ++PN VTL S+LS CAS+ +L  G+  H + I++ L        ++
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLE------SEV 360

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +V  ALIDMYAKC +V+++  +F   + +    A W  +I     NG +  A+ LF QM 
Sbjct: 361 IVETALIDMYAKCNNVNLSFRVFSKXSKQR--TAPWNAIISGCIHNGLSRKAIELFKQML 418

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            +   V PN  TL+  L A A L  L+  R +H Y++R+ +   I  VA  LID+YS+ G
Sbjct: 419 MEA--VDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIE-VATILIDIYSKCG 475

Query: 512 DIDTARVVFDNL--KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            +++A  +F+ +  K +++++W++++ GYGMHG G+ A   FDQM + G+ P+ +TF  +
Sbjct: 476 SLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSI 535

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L+ACSH+G+VD+GL  F  M ++  +S R +HY C++DLLGRA RL+EA ELI  M   P
Sbjct: 536 LHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRP 595

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
              +W ALL  C IH NVELGE+AA  L ELE    G+Y LL+NIY+  GRW+D   +R 
Sbjct: 596 NHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRL 655

Query: 690 LMKHTGVKKRPGCSWVQ 706
           +M + G++K P  S ++
Sbjct: 656 MMNNIGLRKTPAHSLIE 672


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/684 (38%), Positives = 393/684 (57%), Gaps = 30/684 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN ++    ++   + A  L+ +M+  G  PD YTFP VL+ CG +P  R G  VHA
Sbjct: 162 VFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHA 221

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF   V V NAL+ MYA+C  +  AR++FD M    + D +SWN ++A + ++ +
Sbjct: 222 HVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGM---AVTDCISWNAMIAGHFENHE 278

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK-VFERMKVK 278
            E GL LF  M  + +VQ + +++ +   A   L       + G  +E      +R    
Sbjct: 279 CEAGLELFLTMLEN-EVQPNLMTITSVTVASGML------SEVGFAKEMHGFAVKRGFAI 331

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV   N+++  Y+ +G   DA  +F +M  ++     ++W+A+I+GY + G   +AL+V+
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDA----MSWTAMISGYEKNGFPDKALEVY 387

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M+   + P+ VT+ S L+ CA +G L +G + H       L+ +      ++V NAL+
Sbjct: 388 ALMELHNVSPDDVTIASALAACACLGRLDVGIKLH------ELAQNKGFIRYVVVANALL 441

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           +MYAK K +D A  +F  +A K  DV +W+ MI  +  N  + +AL  F  M      VK
Sbjct: 442 EMYAKSKHIDKAIEVFKFMAEK--DVVSWSSMIAGFCFNHRSFEALYYFRYMLGH---VK 496

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN+ T   AL ACA   ALR G++IHAYVLR        +V N L+D+Y + G    A  
Sbjct: 497 PNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE-GYVPNALLDLYVKCGQTSYAWA 555

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F    +++VVSW  +++G+  HGLGD A   F+QM + G  PD VTF+ LL ACS +GM
Sbjct: 556 QFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGM 615

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V QG + F  M+++F I    +HYAC+VDLL R  +L EA  LI  MP++P   +W ALL
Sbjct: 616 VIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALL 675

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           NGCRIH +VELGELAA  +LELE      + LL ++Y +AG+W  VAR+R  M+  G+++
Sbjct: 676 NGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQ 735

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             GCSWV+ K  T  F   D +HPQ ++I  +L G+ +R+KA G+ P  S    +V ++ 
Sbjct: 736 DNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSED- 794

Query: 759 KGDLLFEHSEKLALAYGILTTAPG 782
             D+L  HSE+LA+A+G++ T PG
Sbjct: 795 --DILCGHSERLAVAFGLINTTPG 816



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 201/404 (49%), Gaps = 19/404 (4%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A  A   L  W R    GM   A+   E       +  NAM++   R G    A+ +F K
Sbjct: 98  AYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLG-NAMLSMLVRFGEIWHAWRVFAK 156

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +V     +W+ ++ GY + G   EALD++ +M + G+ P+V T   +L  C  +  
Sbjct: 157 MPERDV----FSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPD 212

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
             +G+E H + ++          D++ V+NAL+ MYAKC  +  AR +FD +A    D  
Sbjct: 213 WRMGREVHAHVLRFGFG------DEVDVLNALVTMYAKCGDIVAARKVFDGMAVT--DCI 264

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  MI  + +N      L LF  M + +  V+PN  T++   +A   L+ + F +++H 
Sbjct: 265 SWNAMIAGHFENHECEAGLELFLTMLENE--VQPNLMTITSVTVASGMLSEVGFAKEMHG 322

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           + ++  + + + F  N LI MY+  G +  A  +F  ++ ++ +SWT++++GY  +G  D
Sbjct: 323 FAVKRGFAIDVAF-CNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPD 381

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           KA   +  M    ++PD VT    L AC+  G +D G+K    +++  G          +
Sbjct: 382 KALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIK-LHELAQNKGFIRYVVVANAL 440

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CRIHANVE 648
           +++  ++  +D+A+E+ + M  E   + W +++ G C  H + E
Sbjct: 441 LEMYAKSKHIDKAIEVFKFMA-EKDVVSWSSMIAGFCFNHRSFE 483


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/560 (41%), Positives = 326/560 (58%), Gaps = 46/560 (8%)

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           M+  D VSWN+++ G  R G  EDA + F+KMR  ++K++  T  +V+  +A        
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFAS------- 53

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
               + MQ      N +++                   HC  IK             +V 
Sbjct: 54  ---MKVMQ------NAISV-------------------HCLIIKTGFEAYK------LVN 79

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NALIDMYAK   +D A ++F  +   ++DV +WT ++  YS NG   +A+ LF +M  + 
Sbjct: 80  NALIDMYAKQGKLDCAIMVFSKMV--DKDVVSWTSLVTGYSHNGSYEEAIKLFCKM--RI 135

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             V P+   ++  L ACA L  + FG+QIHA ++++  E  +  V N L+ MY++ G I 
Sbjct: 136 SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLS-VDNSLVTMYAKCGSIV 194

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A   FDN+  R+V+SWT+L+ GY  +G G  +   +DQM   G  PD +TF+ LL+ACS
Sbjct: 195 DANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACS 254

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H+G++  G  YF++M K +GI    EHYAC++DLLGR+ +L EA  L+  M + P  ++W
Sbjct: 255 HNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVW 314

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL  CR+H  +ELGE+AA  L ELE      Y +LSN+Y+ AG+W+D ARIR LM+  
Sbjct: 315 KALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSR 374

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G+ K PG SW++     +TF   DR HP   +IY  +  ++  IK  GYVP  SFALHD 
Sbjct: 375 GICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDT 434

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           DDE K   L  HSEKLA+A+G+LT   G PIRI KNLR+CGDCH+A+ + S +    IIL
Sbjct: 435 DDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIIL 494

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RDSN FHHF EG C+C  YW
Sbjct: 495 RDSNCFHHFTEGRCSCGDYW 514



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 204/479 (42%), Gaps = 80/479 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN+LI   VR    ++A   F +M  R    DEYT P VL +   +   +   SVH +I 
Sbjct: 9   WNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLII 68

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +GF++   V NAL+ MYA+   L  A  +F +M      D+VSW ++V  Y+ +G  E 
Sbjct: 69  KTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDK---DVVSWTSLVTGYSHNGSYEE 125

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            + LF +M    ++ G   D +++ + LSACA L     G+Q         +   + V  
Sbjct: 126 AIKLFCKM----RISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD- 180

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
               N++VT Y++ GS  DA   F  M       +V++W+A+I GYAQ G G  +L  + 
Sbjct: 181 ----NSLVTMYAKCGSIVDANRAFDNMPTR----DVISWTALIVGYAQNGRGKHSLQFYD 232

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           QM   G +P+ +T + LL  C+  G L  G+       + +  V G  P           
Sbjct: 233 QMIATGTKPDYITFIGLLFACSHNGLLGSGRA----YFEAMDKVYGIKP----------- 277

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
                              P++     +  MI    ++G   +A  L  QM     +V P
Sbjct: 278 ------------------GPEH-----YACMIDLLGRSGKLAEAKGLLNQM-----VVAP 309

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +A      L AC     L  G      +   +    +P+V   L +MYS +G  + A  +
Sbjct: 310 DAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVM--LSNMYSAAGKWEDAARI 367

Query: 520 FDNLKQRNVV-----SW-------TSLMTGYGMHGLGDKAHWAFDQ----MRKEGLAPD 562
              ++ R +      SW       ++ M+    H L ++ +   D+    +++ G  PD
Sbjct: 368 RRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPD 426



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 167/343 (48%), Gaps = 27/343 (7%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRG-- 259
           D VSWN+++    + G  E  L  F +M + D+K+  D  +L + L++ AS+        
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKI--DEYTLPSVLNSFASMKVMQNAIS 62

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             C ++   K  FE  K+ +    NA++  Y++ G  + A  +F KM    V  +VV+W+
Sbjct: 63  VHCLII---KTGFEAYKLVN----NALIDMYAKQGKLDCAIMVFSKM----VDKDVVSWT 111

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +++ GY+  G   EA+ +F +M+  G+ P+ + + S+LS CA +  +  G++ H   +K 
Sbjct: 112 SLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS 171

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L         L V N+L+ MYAKC S+  A   FD +    RDV +WT +I  Y+QNG 
Sbjct: 172 GLE------SSLSVDNSLVTMYAKCGSIVDANRAFDNMP--TRDVISWTALIVGYAQNGR 223

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
              +L  + QM       KP+  T    L AC+    L  GR     + +       P  
Sbjct: 224 GKHSLQFYDQMIATG--TKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH 281

Query: 500 ANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMH 541
             C+ID+  RSG +  A+ + + +    + V W +L+    +H
Sbjct: 282 YACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/731 (34%), Positives = 395/731 (54%), Gaps = 45/731 (6%)

Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSS-----------------RCGSSVHA--VICSS 164
           L+  R+ + P  +  PF+L+     PSS                 + G ++H+  ++ S 
Sbjct: 2   LKAQRKAYVPFRHA-PFLLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSR 60

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
             ++++   N+L+  YA+ + +S A  LFD M +    ++VSW+ ++  Y  +G +   +
Sbjct: 61  ATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPER---NVVSWSALMTGYLLNGFSLKVI 117

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSW 283
            L   M  +  V  +   L  A+S+C   G    G+QC G++ +    F           
Sbjct: 118 RLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNY------VR 171

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+V+ YS+    +DA  ++ ++   ++    V ++++++   + G+  E L+V R M  
Sbjct: 172 NALVSMYSKCSIVQDAMGVWNEVPVNDI----VAYNSILSSLVENGYLREGLEVLRSMVS 227

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             ++ + VT V+  S CAS+  L LG   H   +   +  D        V +A+I+MY K
Sbjct: 228 ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDA------YVSSAIINMYGK 281

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C    +AR +FD +  ++R+V  WT ++ S  QNG   +AL LF +M Q++  VK N FT
Sbjct: 282 CGKSLMARGVFDGL--QSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQEN--VKSNEFT 337

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            +  L ACA L+A R G  +H +  ++ ++  +  V N LI+MY++SGDI+ A+ VF ++
Sbjct: 338 YAVLLNACAGLSARRNGSLLHGHSEKSGFKHHV-MVGNALINMYAKSGDIEAAKKVFSDM 396

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
             R++++W +++ G+  HGLG KA   F  M      P+ VTF  +L AC H G+V +G 
Sbjct: 397 MHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGF 456

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            Y   + K+FG+    EHY CIV LL +  +L+EA   +   P++   + W  LLN C +
Sbjct: 457 YYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHV 516

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N  LG   A  +LE++    G+YTLLSNIYA   RW  V ++R LM+   +KK PG S
Sbjct: 517 HQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVS 576

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++    T  F   D  HP   + Y+ +  L+  IK +GY P     LHDV+DE+K   L
Sbjct: 577 WIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYL 636

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+AYG+L       I + KNLRIC DCHSA+  IS + N  I++RD+NRFHHF
Sbjct: 637 SYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHF 696

Query: 824 KEGSCTCKGYW 834
           ++G C+C  YW
Sbjct: 697 RDGRCSCLDYW 707



 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 240/534 (44%), Gaps = 90/534 (16%)

Query: 48  KSLTQVYLIHQQIIVQNL----THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           K+L     IH  +IV +     + +  + LI  Y   N  S A +L  R+     +V  W
Sbjct: 43  KNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPER--NVVSW 100

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +AL+   +         RL   M+  G   P+EY     + +C +      G   H ++ 
Sbjct: 101 SALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLL 160

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +GF  + +V NAL++MY++C  +  A  +++E+    + DIV++N+I+++  ++G    
Sbjct: 161 KTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEV---PVNDIVAYNSILSSLVENGYLRE 217

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACAS-----LGTWSRGK----------------- 260
           GL +   M  +  V+ D V+ VNA S CAS     LG    GK                 
Sbjct: 218 GLEVLRSMVSE-SVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAII 276

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +CG    A+ VF+ ++ ++VV W A++    + G FE+A  LF KM QENVK N  
Sbjct: 277 NMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEF 336

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           T++                                    LL+ CA + A   G   H ++
Sbjct: 337 TYAV-----------------------------------LLNACAGLSARRNGSLLHGHS 361

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K            +MV NALI+MYAK   ++ A+ +F  +   +RD+ TW  MI  +S 
Sbjct: 362 EK------SGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMM--HRDIITWNAMICGFSH 413

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G    AL +F  M   ++   PN  T +  L AC  L  ++ G     ++++ Q+ +  
Sbjct: 414 HGLGKKALLVFQDMLAAEE--HPNYVTFTGVLSACGHLGLVQEGFYYLHHLMK-QFGVQ- 469

Query: 497 PFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMH---GLG 544
           P + +  C++ + S++G ++ AR        + +VV+W +L+    +H   GLG
Sbjct: 470 PGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLG 523



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 145/356 (40%), Gaps = 67/356 (18%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A++    +    + A  LF +M +     +E+T+  +L AC  L + R GS +H
Sbjct: 299 NVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLH 358

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                SGF  +V V NAL+ MYA+   +  A+++F +M      DI++WN ++  ++  G
Sbjct: 359 GHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHR---DIITWNAMICGFSHHG 415

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG--------KQCGMMEEAKK 270
             +  L++F  M    +   + V+    LSAC  LG    G        KQ G+    + 
Sbjct: 416 LGKKALLVFQDMLA-AEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEH 474

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
                       +  +V+  S+ G   +A      MR   VK +VV W  ++       H
Sbjct: 475 ------------YTCIVSLLSKTGQLNEARNF---MRTAPVKWDVVAWRTLLNA----CH 515

Query: 331 GHEALDVFRQMQFCGLE--PNVVTLVSLLS----------GCASVGALL----------- 367
            H+   + R +    LE  PN V   +LLS          G   V  L+           
Sbjct: 516 VHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGV 575

Query: 368 ----LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV----DVARVMFD 415
               +G  TH +T     S D  HPD       + ++ A  K +    D+  V+ D
Sbjct: 576 SWIEIGNVTHIFT-----SEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHD 626


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/628 (37%), Positives = 373/628 (59%), Gaps = 26/628 (4%)

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           WN +++A++++G     L +F  +    +      +L   L+ACA LG     +   +  
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSARPNSTTFTLT--LTACARLGDLDAAESVRV-- 131

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
              + F      DV   +A++  YSR G+ E+A  +F  M +++     V WS ++AG+ 
Sbjct: 132 ---RAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDR----VAWSTMVAGFV 184

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
             G   EAL ++ +M+  G+  + V +V ++  C S G   +G   H   ++  + +D  
Sbjct: 185 TAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMD-- 242

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
               ++   +L+ MYAK   +DVA  +F  + P   DV TW+ +I  ++QNG A +AL L
Sbjct: 243 ----VVTTTSLVSMYAKNGHLDVACQVFRMM-PYRNDV-TWSALISGFAQNGRAVEALDL 296

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F ++ Q D L +P ++ L  AL+ACA +  L+ G+ IH ++LR      I  +   ++DM
Sbjct: 297 FREL-QADGL-QPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQCI--LGTAVLDM 352

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           YS+ G +++AR +F+ L  R++V W +++   G HG G  A   F ++ + G+ PD  TF
Sbjct: 353 YSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATF 412

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
             LL A SHSG+V++G  +FD M KEFGI    +HY CIVDLL R+  ++EA +++  M 
Sbjct: 413 ASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQ 472

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
            EPT  IWV LL+GC  +  +ELGE  A ++LEL  E  G   L+SN+YA A +W  V  
Sbjct: 473 TEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVRE 532

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           IR LMK +G KK PG S ++ K     F + D++HPQ ++I +++A L   ++ +GYVP+
Sbjct: 533 IRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPR 592

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           T F  HD+D+++   LL  HSE+LA+A+G+L T+PGT + I KNLR+CGDCH AI +IS 
Sbjct: 593 TEFVYHDLDEDQ---LLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISK 649

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I++ EI++RD+ RFHHFK+G+C+C  YW
Sbjct: 650 IVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/495 (30%), Positives = 253/495 (51%), Gaps = 37/495 (7%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIR 108
           +L  +  +H  ++V +  H+  S L AAY    A   A S L     SP S+  WN L+ 
Sbjct: 23  TLATLTRLHALLVVSSSQHILSS-LAAAYARAGALDAAESTLAASPSSPSSIAAWNGLLS 81

Query: 109 RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
              R   P  A R+F + +     P+  TF   L AC  L       SV     ++G+  
Sbjct: 82  AHSRAGAPGAALRVF-RALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGH 140

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +VFVC+AL+ +Y+RC  +  A ++FD M +    D V+W+T+VA +  +G     L +++
Sbjct: 141 DVFVCSALLHLYSRCGAMEEAIRVFDGMPRK---DRVAWSTMVAGFVTAGRPVEALAMYS 197

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
           RM  +  V  D V +V  + AC S G      + G     + +   M++ DVV+  ++V+
Sbjct: 198 RMR-EHGVSDDEVVMVGVIQACMSTGN----ARIGASVHGRLLRHCMRM-DVVTTTSLVS 251

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y++ G  + A  +F+ M       N VTWSA+I+G+AQ G   EALD+FR++Q  GL+P
Sbjct: 252 MYAKNGHLDVACQVFRMMPYR----NDVTWSALISGFAQNGRAVEALDLFRELQADGLQP 307

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
               LVS L  CASVG L LGK  H + ++R+           ++  A++DMY+KC S++
Sbjct: 308 CSWALVSALLACASVGFLKLGKSIHGFILRRL-------EWQCILGTAVLDMYSKCGSLE 360

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            AR +F+ ++  +RD+  W  +I     +G  +DALALF ++ +    +KP+  T +  L
Sbjct: 361 SARKLFNKLS--SRDLVLWNAIIACCGTHGCGHDALALFQELNETG--IKPDHATFASLL 416

Query: 469 MACARLAALR-----FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            A +    +      F R I  + +    +  +     C++D+ +RSG ++ A  +  ++
Sbjct: 417 SALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYV-----CIVDLLARSGLVEEANDMLASM 471

Query: 524 KQRNVVS-WTSLMTG 537
           +    ++ W  L++G
Sbjct: 472 QTEPTIAIWVILLSG 486


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/584 (39%), Positives = 329/584 (56%), Gaps = 30/584 (5%)

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            E  K    V  + +   Y+ +G  + + ALF + +  +V      W+A+I G+A RG  
Sbjct: 1   MEDKKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFF----WTAIIHGHALRGLH 56

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCA-------SVGALLLGKETHCYTIKRVLSV- 383
            +AL+ + QM   G+EPN  T  S+L  C           A+ LG ++  Y    +L V 
Sbjct: 57  EQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVY 116

Query: 384 -------------DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
                        D      L+ + A++  YAK   +D ARV+FD +  + RD   W VM
Sbjct: 117 ARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGM--EERDGVCWNVM 174

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  Y+QNG  N+AL LF +M +     KPN  T+   L AC +L AL  GR +H+Y+  N
Sbjct: 175 IDGYTQNGMPNEALVLFRRMLKAK--AKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 232

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
             +  +  V   L+DMYS+ G ++ AR+VFD +  ++VV+W S++ GY M G   +A   
Sbjct: 233 GIQFNV-HVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQL 291

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F  M + GL P  +TF+ +L AC HSG V +G   F+ M  E+GI  + EHY C+V+LLG
Sbjct: 292 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLG 351

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA  +++A EL++ M +EP P++W  LL  CR+H  + LGE     L++      G+Y L
Sbjct: 352 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 411

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSNIYA  G W  VAR+R++MK +GVKK PGCS ++       F  G   HP+ ++IY +
Sbjct: 412 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMM 471

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  +   +K+ GY PQT   LHD+ + EK   L  HSEKLA+A+G++ T PGT I+I KN
Sbjct: 472 LEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKN 531

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCH     IS I   +I++RD NRFHHF  GSC+C  YW
Sbjct: 532 LRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 152/612 (24%), Positives = 264/612 (43%), Gaps = 126/612 (20%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           VP   L  +Y S      +++L  R + +P SVF+W A+I       L + A   + QM+
Sbjct: 10  VPLDKLQRSYASLGRLDYSVALFGR-TQNP-SVFFWTAIIHGHALRGLHEQALNFYAQML 67

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
            +G  P+ +TF  +LK C   P    G ++H+     GFDS+++V   L+ +YAR   + 
Sbjct: 68  TQGVEPNAFTFSSILKLCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVV 123

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            A+QLFD M +     +VS   ++  YA+ G+                            
Sbjct: 124 SAQQLFDTMPEK---SLVSLTAMLTCYAKHGE---------------------------- 152

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                            ++ A+ +F+ M+ +D V WN M+ GY++ G   +A  LF++M 
Sbjct: 153 -----------------LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRML 195

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           +   K                                   PN VT++S+LS C  +GAL 
Sbjct: 196 KAKAK-----------------------------------PNEVTVLSVLSACGQLGALE 220

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G+  H Y     +        ++ V  AL+DMY+KC S++ AR++FD I   ++DV  W
Sbjct: 221 SGRWVHSYIENNGIQF------NVHVGTALVDMYSKCGSLEDARLVFDKI--DDKDVVAW 272

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             MI  Y+  G + +AL LF  M +    + P   T    L AC     +  G  I    
Sbjct: 273 NSMIVGYAMXGFSQEALQLFKSMCRMG--LHPTNITFIGILSACGHSGWVTEGWDIFNK- 329

Query: 488 LRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG-- 542
           ++++Y  + P + +  C++++  R+G ++ A  +  N+  + + V W +L+    +HG  
Sbjct: 330 MKDEYG-IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 388

Query: 543 -LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
            LG+K     + +  + LA  G T+++L    +  G  D G+    +M K+ G+      
Sbjct: 389 ALGEK---IVELLVDQNLANSG-TYILLSNIYAAVGNWD-GVARLRTMMKDSGVKKEPGC 443

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CRIHANV--------ELGEL 652
            +  V+     N++ E +      P      + +  +NG  + H           ++GE 
Sbjct: 444 SSIEVN-----NKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGET 498

Query: 653 AANRLLELESEK 664
              R LE+ SEK
Sbjct: 499 EKERSLEVHSEK 510


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/577 (41%), Positives = 343/577 (59%), Gaps = 20/577 (3%)

Query: 263 GMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G +   +++  R+ V     D V    +V  Y+  G    A  LF  M + NV L    W
Sbjct: 76  GSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFL----W 131

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           + +I  YA+ G    A+ ++R M   G+EP+  T   +L  CA++  L  G+E H    +
Sbjct: 132 NVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH----Q 187

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
           RV         D+ V   ++DMYAKC  VD AR +FD IA   RD   W  MI +Y QNG
Sbjct: 188 RVSGTRWGQ--DVFVCAGVVDMYAKCGCVDDARAVFDGIAV--RDAVVWNSMIAAYGQNG 243

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +ALAL   M      + P   TL  A+ A A  AAL  GR++H +  R  +  L   
Sbjct: 244 RPMEALALCRDMAANG--IGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFG-LQDK 300

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           +   L+DMY++SG +  ARV+F+ L +R +VSW +++ GYGMHG  D+A   F++M+ + 
Sbjct: 301 LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDA 360

Query: 559 -LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
            + PD +TF+ +L AC+H GMV++  ++F  M   + I    +HY C++D+LG   R +E
Sbjct: 361 QVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEE 420

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A +LI+GM +EP   IW ALLNGC+IH NVELGELA  +L+ELE E  G+Y  LSNIYA 
Sbjct: 421 AYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQ 480

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
           +G+W+  AR+R LM + G+KK   CSW++ K  T  F VGD +HP+S +IY  L  L   
Sbjct: 481 SGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGL 540

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +   GYVP      H+VDD+EK +++  HSE+LA+A+G+++T PGT + +TKNLR+C DC
Sbjct: 541 MSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDC 600

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H  I  IS I+  EII+RD NR+HHF  G C+CK YW
Sbjct: 601 HVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 200/407 (49%), Gaps = 33/407 (8%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L++C    S R G  +H  +  SG   +  +   L+ +YA C  + +AR+LFD M +  
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR- 126

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++  WN ++ AYA+ G  E  + L+  M  +  V+ D  +    L ACA+L     G+
Sbjct: 127 --NVFLWNVLIRAYAREGPREAAVRLYRGMV-EHGVEPDNFTYPLVLKACAALLDLETGR 183

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                E  ++V      +DV     +V  Y++ G  +DA A+F  +       + V W++
Sbjct: 184 -----EVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR----DAVVWNS 234

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +IA Y Q G   EAL + R M   G+ P + TLVS +S  A   AL  G+E H +  +R 
Sbjct: 235 MIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRG 294

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             +     D L    +L+DMYAK   V VARV+F+ +    R++ +W  MI  Y  +G A
Sbjct: 295 FGLQ----DKLKT--SLVDMYAKSGWVQVARVLFEQLM--KRELVSWNAMICGYGMHGHA 346

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           ++ALALF +M + D  V P+  T    L AC     +   ++   Y++ N Y  + P V 
Sbjct: 347 DEALALFNKM-KGDAQVTPDNITFVGVLSACNHGGMVEEAKEFF-YLMVNAYS-IKPTVQ 403

Query: 501 N--CLIDMYSRSGDIDTARVVFDNLKQRNVVS----WTSLMTGYGMH 541
           +  C+ID+   +G  + A   +D +K  ++      W +L+ G  +H
Sbjct: 404 HYTCVIDVLGHTGRFEEA---YDLIKGMSIEPDSGIWGALLNGCKIH 447



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 132/273 (48%), Gaps = 37/273 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +VF WN LIR   R    + A RL+  M+  G  PD +T+P VLKAC  L     G  VH
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +  + +  +VFVC  ++ MYA+C  +  AR +FD +    + D V WN+++AAY Q+G
Sbjct: 187 QRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGI---AVRDAVVWNSMIAAYGQNG 243

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT--------------WSRG----- 259
                L L      D+   G G ++   +SA ++                 W RG     
Sbjct: 244 RPMEALALCR----DMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQD 299

Query: 260 ----------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                      + G ++ A+ +FE++  +++VSWNAM+ GY   G  ++A ALF KM+ +
Sbjct: 300 KLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGD 359

Query: 310 -NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             V  + +T+  V++     G   EA + F  M
Sbjct: 360 AQVTPDNITFVGVLSACNHGGMVEEAKEFFYLM 392


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/686 (36%), Positives = 379/686 (55%), Gaps = 69/686 (10%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           A+QLFD + QP   D  + +T+++A+   G     + L+A +        + V L  A  
Sbjct: 85  AQQLFDNIPQP---DPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA-K 140

Query: 249 ACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           AC + G  SR K+       CGMM             D    NA++  Y +    E A  
Sbjct: 141 ACGASGDASRVKEVHDDAIRCGMMS------------DAFLGNALIHAYGKCKCVEGARR 188

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  +    V  +VV+W+++ + Y   G     L VF +M + G++PN VTL S+L  C+
Sbjct: 189 VFDDL----VVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACS 244

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +  L  G+  H + ++  +       +++ V +AL+ +YA+C SV  AR++FD +   +
Sbjct: 245 ELKDLKSGRAIHGFAVRHGM------IENVFVCSALVSLYARCLSVKQARLVFDLMP--H 296

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMF----------------------QQDKLV-- 457
           RDV +W  ++ +Y  N   +  LALF QM                       Q +K V  
Sbjct: 297 RDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEM 356

Query: 458 ---------KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
                    KPN  T+S  L AC+ L +LR G+++H YV R  + +        L+ MY+
Sbjct: 357 LRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFR-HWLIGDLTTMTALVYMYA 415

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + GD++ +R VFD + +++VV+W +++    MHG G +    F+ M + G+ P+ VTF  
Sbjct: 416 KCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTG 475

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L  CSHS +V++GL+ F+SM ++  +   A HYAC+VD+  RA RL EA E I+ MPME
Sbjct: 476 VLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPME 535

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           PT   W ALL  CR++ NVEL +++AN+L E+E    G+Y  L NI   A  W + +  R
Sbjct: 536 PTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEAR 595

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
            LMK  G+ K PGCSW+Q  +   TF VGD+ + +S KIY  L  L +++K+ GY P T 
Sbjct: 596 ILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTD 655

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
           + L D+D EEK + L  HSEKLA+A+GIL     + IR+ KNLRICGDCH+AI ++S ++
Sbjct: 656 YVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVV 715

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
              II+RDS RFHHF+ G+C+C+  W
Sbjct: 716 GVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 221/451 (49%), Gaps = 47/451 (10%)

Query: 115 LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           LP+ A RL+  +  RG  P    F  V KACG    +     VH      G  S+ F+ N
Sbjct: 112 LPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGN 171

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           AL+  Y +C  +  AR++FD++    + D+VSW ++ + Y   G    GL +F  M G  
Sbjct: 172 ALIHAYGKCKCVEGARRVFDDLV---VKDVVSWTSMSSCYVNCGLPRLGLAVFCEM-GWN 227

Query: 235 KVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMMEEA 268
            V+ + V+L + L AC+ L     G+                          +C  +++A
Sbjct: 228 GVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQA 287

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           + VF+ M  +DVVSWN ++T Y     ++   ALF +M  + V+ +  TW+AVI G  + 
Sbjct: 288 RLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMEN 347

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   +A+++ R+MQ  G +PN +T+ S L  C+ + +L +GKE HCY  +  L       
Sbjct: 348 GQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWL------I 401

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            DL  + AL+ MYAKC  ++++R +FD I  K  DV  W  MI + + +G   + L LF 
Sbjct: 402 GDLTTMTALVYMYAKCGDLNLSRNVFDMICRK--DVVAWNTMIIANAMHGNGREVLLLFE 459

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN---CLID 505
            M Q    +KPN+ T +  L  C+    +  G QI   + R+    L+   AN   C++D
Sbjct: 460 SMLQSG--IKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDH---LVEPDANHYACMVD 514

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVS-WTSLM 535
           ++SR+G +  A      +      S W +L+
Sbjct: 515 VFSRAGRLHEAYEFIQRMPMEPTASAWGALL 545



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 38/292 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W ++    V   LP     +F +M   G  P+  T   +L AC EL   + G ++H 
Sbjct: 198 VVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHG 257

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                G   NVFVC+AL+++YARC ++  AR +FD M      D+VSWN ++ AY  + +
Sbjct: 258 FAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR---DVVSWNGVLTAYFTNRE 314

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
            + GL LF++M+    V+ D  +    +  C   G   +  +                  
Sbjct: 315 YDKGLALFSQMSSK-GVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITIS 373

Query: 262 -----CGMMEEAKK-------VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                C ++E  +        VF    + D+ +  A+V  Y++ G    +  +F  +   
Sbjct: 374 SFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMI--- 430

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
             + +VV W+ +I   A  G+G E L +F  M   G++PN VT   +LSGC+
Sbjct: 431 -CRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCS 481



 Score = 43.5 bits (101), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           GD   A+ +FDN+ Q +  + ++L++ +   GL ++A   +  +R  G+ P    FL + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 571 YACSHSG 577
            AC  SG
Sbjct: 140 KACGASG 146


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 373/679 (54%), Gaps = 50/679 (7%)

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            L YA  LF  +  P        N ++  +++    E  L L+  +  +     D  S  
Sbjct: 64  ALDYALSLFSHIPNP---PTRFSNQLLRQFSRGPTPENTLSLYLHLRRN-GFPLDRFSFP 119

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
             L A + L   + G +   +      F      D    +A++  Y+  G   DA  LF 
Sbjct: 120 PLLKAVSKLSALNLGLEIHGLASKFGFFH----ADPFIQSALIAMYAACGRIMDARFLFD 175

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           KM   +V    VTW+ +I GY+Q  H    L ++ +M+  G EP+ + L ++LS CA  G
Sbjct: 176 KMSHRDV----VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAG 231

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--- 421
            L  GK  H +       V GSH     +  +L++MYA C ++ +AR ++D +  K+   
Sbjct: 232 NLSYGKAIHQFIKDNGFRV-GSH-----IQTSLVNMYANCGAMHLAREVYDQLPSKHMVV 285

Query: 422 --------------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                                     +D+  W+ MI  Y+++    +AL LF +M  Q +
Sbjct: 286 STAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEM--QRR 343

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            + P+  T+   + ACA + AL   + IH Y  +N +   +P + N LIDMY++ G++  
Sbjct: 344 RIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLP-INNALIDMYAKCGNLVK 402

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR VF+N+ ++NV+SW+S++  + MHG  D A   F +M+++ + P+GVTF+ +LYACSH
Sbjct: 403 AREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSH 462

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +G+V++G K+F SM  E  IS + EHY C+VDL  RAN L +A+ELIE MP  P  IIW 
Sbjct: 463 AGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWG 522

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           +L++ C+ H  +ELGE AA RLLELE + DG+  +LSNIYA   RW DV  +R LMKH G
Sbjct: 523 SLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKG 582

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           V K   CS ++       F + DR H QS +IY+ L  +V ++K +GY P TS  L D++
Sbjct: 583 VSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLE 642

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +EEK +++  HSEKLAL YG++     + IRI KNLRIC DCHS +  +S +   EI++R
Sbjct: 643 EEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMR 702

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D  RFHHF  G C+C+ YW
Sbjct: 703 DRTRFHHFNGGICSCRDYW 721



 Score =  252 bits (644), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 180/566 (31%), Positives = 286/566 (50%), Gaps = 63/566 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP-------ALSLLQRISP 95
           LL  CK+L  V  IH QI+   + +     L         PSP       ALSL   I P
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHI-P 76

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           +P + F  N L+R+  R   P+N   L+L + R G+  D ++FP +LKA  +L +   G 
Sbjct: 77  NPPTRFS-NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGL 135

Query: 156 SVHAVICSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            +H +    G F ++ F+ +AL+AMYA C  +  AR LFD+M      D+V+WN ++  Y
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHR---DVVTWNIMIDGY 192

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
           +Q+   +  L L+  M      + D + L   LSACA  G  S GK              
Sbjct: 193 SQNAHYDHVLKLYEEMKTS-GTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVG 251

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG M  A++V++++  K +V   AM++GY+++G  +DA  +F +M  
Sbjct: 252 SHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRM-- 309

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             V+ ++V WSA+I+GYA+     EAL +F +MQ   + P+ +T++S++S CA+VGAL+ 
Sbjct: 310 --VEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQ 367

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
            K  H Y  K            L + NALIDMYAKC ++  AR +F+ +  KN  V +W+
Sbjct: 368 AKWIHTYADKNGFG------RTLPINNALIDMYAKCGNLVKAREVFENMPRKN--VISWS 419

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI +++ +G A+ A+ALF +M +Q+  ++PN  T    L AC+    +  G++  + ++
Sbjct: 420 SMINAFAMHGDADSAIALFHRMKEQN--IEPNGVTFIGVLYACSHAGLVEEGQKFFSSMI 477

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LG 544
                        C++D+Y R+  +  A  + + +    NV+ W SLM+    HG   LG
Sbjct: 478 NEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELG 537

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +     F   R   L PD    LV+L
Sbjct: 538 E-----FAATRLLELEPDHDGALVVL 558


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/698 (36%), Positives = 378/698 (54%), Gaps = 27/698 (3%)

Query: 141 VLKACGELPSSRCGSSVHAVIC---SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           +LK      S R G ++HA +     +  DS++   N+L+ +Y++C     AR+LFD M 
Sbjct: 29  LLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRML 88

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           Q    ++VSW+ ++  Y   G+    L LF  +        +       LS CA  G   
Sbjct: 89  QR---NVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVK 145

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GKQC        +     VK     NA++  YSR    + A  +   +  ++V     +
Sbjct: 146 EGKQCHGYLLKSGLLLHQYVK-----NALIHMYSRCFHVDSAMQILDTVPGDDV----FS 196

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           ++++++   + G   EA  V ++M    +  + VT VS+L  CA +  L LG + H   +
Sbjct: 197 YNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLL 256

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K  L  D      + V + LID Y KC  V  AR  FD +  ++R+V  WT ++ +Y QN
Sbjct: 257 KTGLVFD------VFVSSTLIDTYGKCGEVLNARKQFDGL--RDRNVVAWTAVLTAYLQN 308

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   + L LF +M  +D   +PN FT +  L ACA L AL +G  +H  ++ + ++  + 
Sbjct: 309 GHFEETLNLFTKMELED--TRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHL- 365

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            V N LI+MYS+SG+ID++  VF N+  R+V++W +++ GY  HGLG +A   F  M   
Sbjct: 366 IVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSA 425

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G  P+ VTF+ +L AC H  +V +G  YFD + K+F +    EHY C+V LLGRA  LDE
Sbjct: 426 GECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDE 485

Query: 618 AVELIEGMPMEPTPII-WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           A   ++        ++ W  LLN C IH N  LG+     +++++    G+YTLLSN++A
Sbjct: 486 AENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHA 545

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
            A +W  V +IR LMK   +KK PG SW+  +  T  F      HP+S +I+E +  L+ 
Sbjct: 546 KARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLA 605

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
            IK +GY P     LHDV+DE+K   L  HSEKLALAYG++   P  PIRI KNLR+C D
Sbjct: 606 MIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDD 665

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CH A+  IS   N  II+RD+NRFHHF+EG CTC  +W
Sbjct: 666 CHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 229/530 (43%), Gaps = 89/530 (16%)

Query: 48  KSLTQVYLIHQQIIVQNLTH-----VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           KSL     IH Q++V+N T         + LI  Y        A  L  R+     +V  
Sbjct: 37  KSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQR--NVVS 94

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W+AL+   +          LF  ++     +P+EY F  VL  C +    + G   H  +
Sbjct: 95  WSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYL 154

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             SG   + +V NAL+ MY+RC  +  A Q+ D +  PG  D+ S+N+I++A  +SG   
Sbjct: 155 LKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTV--PGD-DVFSYNSILSALVESGCRG 211

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------- 261
               +  RM  D  V  D V+ V+ L  CA +     G Q                    
Sbjct: 212 EAAQVLKRMV-DECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTL 270

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                 CG +  A+K F+ ++ ++VV+W A++T Y + G FE+   LF KM  E+ +   
Sbjct: 271 IDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTR--- 327

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
                                           PN  T   LL+ CAS+ AL  G   H  
Sbjct: 328 --------------------------------PNEFTFAVLLNACASLVALAYGDLLHG- 354

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
             + V+S   +H   L+V NALI+MY+K  ++D +  +F  +   NRDV TW  MI  YS
Sbjct: 355 --RIVMSGFKNH---LIVGNALINMYSKSGNIDSSYNVFSNMM--NRDVITWNAMICGYS 407

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            +G    AL +F  M    +   PN  T    L AC  LA ++ G      +++ +++ +
Sbjct: 408 HHGLGKQALLVFQDMMSAGEC--PNYVTFIGVLSACVHLALVQEGFYYFDQIMK-KFD-V 463

Query: 496 IPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR--NVVSWTSLMTGYGMH 541
            P + +  C++ +  R+G +D A        Q   +VV+W +L+    +H
Sbjct: 464 EPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIH 513



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 121/268 (45%), Gaps = 26/268 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A++   ++    +    LF +M      P+E+TF  +L AC  L +   G  +H
Sbjct: 294 NVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLH 353

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  SGF +++ V NAL+ MY++   +  +  +F  M      D+++WN ++  Y+  G
Sbjct: 354 GRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNR---DVITWNAMICGYSHHG 410

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER-MKV 277
             +  L++F  M    +   + V+ +  LSAC  L          +++E    F++ MK 
Sbjct: 411 LGKQALLVFQDMMSAGECP-NYVTFIGVLSACVHL---------ALVQEGFYYFDQIMKK 460

Query: 278 KDV----VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            DV      +  MV    R G  ++A    K   Q  VK +VV W  ++       H H 
Sbjct: 461 FDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQ--VKWDVVAWRTLLNA----CHIHR 514

Query: 334 ALDVFRQM--QFCGLEPNVVTLVSLLSG 359
             ++ +Q+      ++P+ V   +LLS 
Sbjct: 515 NYNLGKQITETVIQMDPHDVGTYTLLSN 542


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/523 (42%), Positives = 328/523 (62%), Gaps = 10/523 (1%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N V  +A+ +GY +    + +L++FR M        V    +L++  AS      G    
Sbjct: 14  NPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTAS 73

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMI 431
            + +   +  +     +  V+N ++D YAK   + ++VAR +FD +    RDV +W  MI
Sbjct: 74  LHALIAKIGFE----RNAGVVNTMLDSYAKGGSRDLEVARKVFDTM---ERDVVSWNSMI 126

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QNG + +A+ L+ +M      +K NA  LS  L+ACA   A++ G+ IH  V+R  
Sbjct: 127 ALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMG 186

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            E  + +V   ++DMYS+ G ++ A   F  +K++N++SW++++TGYGMHG G +A   F
Sbjct: 187 LEENV-YVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF 245

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M++ GL P+ +TF+ +L ACSH+G++D+G  ++++M +EFGI A  EHY C+VDLLGR
Sbjct: 246 TEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGR 305

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  LDEA  LI+ M ++P   IW ALL+ CRIH NVEL E++  RL EL++   G Y LL
Sbjct: 306 AGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLL 365

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNIYA AG WKDV RIR L+K   ++K PG S  + K     F+VGD++HPQ  +IY  L
Sbjct: 366 SNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYL 425

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L++R++  GYVP T   LHD+D+EEK   L  HSEKLA+A+ ++ + P + I I KNL
Sbjct: 426 EKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNL 485

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCH+A+ FI+ I   EII+RD  RFHHFK+G C+C+ YW
Sbjct: 486 RVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 43/290 (14%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVLKACGELPSSR 152
           P+P  V    A+    VR  L  ++  LF  M+        DE        A   +P   
Sbjct: 13  PNPVIV---TAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG 69

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQLFDEMFQPGICDIVSWNTI 210
             +S+HA+I   GF+ N  V N ++  YA+  +  L  AR++FD M +    D+VSWN++
Sbjct: 70  VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER----DVVSWNSM 125

Query: 211 VAAYAQSGDAEGGLMLFARMT---GDVKVQGDGVSLVNALSACASLGTWSRGK------- 260
           +A YAQ+G +   + L+++M    G +K   + V+L   L ACA  G    GK       
Sbjct: 126 IALYAQNGMSAEAIGLYSKMLNVGGGIKC--NAVALSAVLLACAHAGAIQTGKHIHNQVV 183

Query: 261 -------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
                              +CG +E A + F ++K K+++SW+AM+TGY   G  ++A  
Sbjct: 184 RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALE 243

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNV 350
           +F +M++  ++ N +T+ +V+A  +  G   E    +  M Q  G+E  V
Sbjct: 244 IFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGV 293



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 170/380 (44%), Gaps = 58/380 (15%)

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA--EGGL 224
           D N  +  A+ + Y R + + ++ +LF  M       +V     + A++ S      G  
Sbjct: 12  DPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVT 71

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN 284
                +   +  + +   +VN +     L ++++G     +E A+KVF+ M+ +DVVSWN
Sbjct: 72  ASLHALIAKIGFERNA-GVVNTM-----LDSYAKGGSRD-LEVARKVFDTME-RDVVSWN 123

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           +M+  Y++ G   +A  L+ KM      LNV                             
Sbjct: 124 SMIALYAQNGMSAEAIGLYSKM------LNVGG--------------------------- 150

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G++ N V L ++L  CA  GA+  GK  H   ++  L       +++ V  +++DMY+KC
Sbjct: 151 GIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLE------ENVYVGTSIVDMYSKC 204

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             V++A   F  I  KN  + +W+ MI  Y  +G   +AL +F +M +    ++PN  T 
Sbjct: 205 GRVEMASRAFRKIKEKN--ILSWSAMITGYGMHGRGQEALEIFTEMKRSG--LRPNYITF 260

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDN 522
              L AC+    L  GR  + Y    Q   +   V +  C++D+  R+G +D A  +   
Sbjct: 261 ISVLAACSHAGLLDEGR--YWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKE 318

Query: 523 LKQR-NVVSWTSLMTGYGMH 541
           +K + +   W +L++   +H
Sbjct: 319 MKVKPDAAIWGALLSACRIH 338


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/662 (36%), Positives = 363/662 (54%), Gaps = 101/662 (15%)

Query: 174 NALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           N L+A YAR    L+ AR LFD +  P   D+VS+NT++  +  SGDA+G          
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTP---DVVSYNTLLLCHFASGDADG---------- 98

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
                                              A+++F  M V+DV SWN MV+G S+
Sbjct: 99  -----------------------------------ARRLFASMPVRDVASWNTMVSGLSK 123

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G+ E+A  +F  M   N     V+W+A+++G+A  G    A + FR             
Sbjct: 124 SGAVEEAKVVFLAMPVRNS----VSWNAMVSGFACSGDMSTAEEWFR------------- 166

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
                                          +    +D ++  A++  Y    +V  A  
Sbjct: 167 -------------------------------NAPEKEDAVLWTAMVSGYMDIGNVVKAIK 195

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            F+A+  +N  + +W  ++  Y +N  A+DAL LF  M ++   V+PNA TLS  L+ C+
Sbjct: 196 YFEAMPVRN--LVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQPNASTLSSVLLGCS 252

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L+AL FG+QIH + ++      +  V   L+ MY + GD+ +A ++F  +  R+VV+W 
Sbjct: 253 NLSALGFGKQIHQWCMKLLLSRNLT-VGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWN 311

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           ++++GY  HG G +A   F++M+ EG+ P+ +TF+V+L AC H+G+ D G++ F+ M + 
Sbjct: 312 AMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQEL 371

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
           +GI  R +HY+C+VDLL RA +L+ AV+ I  MP EP P  +  LL  CR++ N+E  EL
Sbjct: 372 YGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAEL 431

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
           AA +L+E + +  G+Y  L+NIYA A +W DV+R+R  MK   V K PG SW++ K    
Sbjct: 432 AAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLH 491

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F   DR HPQ   I+E L  L +R+K MGYVP   F LHDVD+  K  +L  HSEKLA+
Sbjct: 492 EFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAI 551

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           A+G+++TA G  +RI KNLR+CGDCH+A   ISMI + EIILRD+ RFHHF+ G C+C  
Sbjct: 552 AFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDD 611

Query: 833 YW 834
           YW
Sbjct: 612 YW 613



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 11/206 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA++   V+    D+A RLF  M+R     P+  T   VL  C  L +   G  +H   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                  N+ V  +L++MY +C  LS A  LF EM      D+V+WN +++ YAQ GD +
Sbjct: 268 MKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR---DVVAWNAMISGYAQHGDGK 324

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDV 280
             + LF RM  D  V+ + ++ V  L+AC   G    G QC   M+E   +  R     V
Sbjct: 325 EAINLFERMK-DEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPR-----V 378

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKM 306
             ++ MV    R G  E A    + M
Sbjct: 379 DHYSCMVDLLCRAGKLERAVDFIRSM 404


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/709 (35%), Positives = 392/709 (55%), Gaps = 67/709 (9%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P E  F  + +     P  R   +VH+ I       N  +   LM  YA    ++ AR++
Sbjct: 38  PQETVF-LLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKV 96

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDE+ +    +++  N ++ +Y  +G    G+ +F  M G   V+ D  +    L AC+ 
Sbjct: 97  FDEIPER---NVIIINVMIRSYVNNGFYGEGVKVFGTMCG-CNVRPDHYTFPCVLKACSC 152

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
            GT   G++  +   A KV        +   N +V+ Y + G   +A  +  +M + +V 
Sbjct: 153 SGTIVIGRK--IHGSATKVGLS---STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV- 206

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              V+W++++ GYAQ     +AL+V R+M+   +  +  T+ SLL               
Sbjct: 207 ---VSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP-------------- 249

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                    +V  +  +++M +    DM+ K                  + + +W VMIG
Sbjct: 250 ---------AVSNTTTENVMYVK---DMFFKMG---------------KKSLVSWNVMIG 282

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y +N    +A+ L+ +M + D   +P+A +++  L AC   +AL  G++IH Y+ R + 
Sbjct: 283 VYMKNAMPVEAVELYSRM-EADGF-EPDAVSITSVLPACGDTSALSLGKKIHGYIERKK- 339

Query: 493 EMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
             LIP   + N LIDMY++ G ++ AR VF+N+K R+VVSWT++++ YG  G G  A   
Sbjct: 340 --LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVAL 397

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +++  GL PD + F+  L ACSH+G++++G   F  M+  + I+ R EH AC+VDLLG
Sbjct: 398 FSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLG 457

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA ++ EA   I+ M MEP   +W ALL  CR+H++ ++G LAA++L +L  E+ G Y L
Sbjct: 458 RAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVL 517

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSNIYA AGRW++V  IR++MK  G+KK PG S V+      TF VGDR+HPQS +IY  
Sbjct: 518 LSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRE 577

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP-----GTPI 785
           L  LV+++K +GYVP +  ALHDV++E+K   L  HSEKLA+ + ++ T          I
Sbjct: 578 LDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTI 637

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RITKNLRICGDCH A   IS I + EII+RD+NRFH F+ G C+C  YW
Sbjct: 638 RITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 151/520 (29%), Positives = 240/520 (46%), Gaps = 67/520 (12%)

Query: 56  IHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           +H +II+++L         L+ AY S    + A  +   I     +V   N +IR  V  
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPER--NVIIINVMIRSYVNN 118

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
                  ++F  M      PD YTFP VLKAC    +   G  +H      G  S +FV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N L++MY +C  LS AR + DEM +    D+VSWN++V  YAQ+   +  L +   M   
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRR---DVVSWNSLVVGYAQNQRFDDALEVCREMES- 234

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           VK+  D  ++ + L A ++  T +       +   K +F +M  K +VSWN M+  Y + 
Sbjct: 235 VKISHDAGTMASLLPAVSNTTTEN-------VMYVKDMFFKMGKKSLVSWNVMIGVYMKN 287

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
               +A  L+ +M  +                                   G EP+ V++
Sbjct: 288 AMPVEAVELYSRMEAD-----------------------------------GFEPDAVSI 312

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L  C    AL LGK+ H Y  ++ L        +L++ NALIDMYAKC  ++ AR +
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKL------IPNLLLENALIDMYAKCGCLEKARDV 366

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +  K+RDV +WT MI +Y  +G   DA+ALF ++  QD  + P++      L AC+ 
Sbjct: 367 FENM--KSRDVVSWTAMISAYGFSGRGCDAVALFSKL--QDSGLVPDSIAFVTTLAACSH 422

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVS 530
              L  GR    + L   +  + P + +  C++D+  R+G +  A R + D   + N   
Sbjct: 423 AGLLEEGRS--CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERV 480

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           W +L+    +H   D    A D++ +  LAP+   + VLL
Sbjct: 481 WGALLGACRVHSDTDIGLLAADKLFQ--LAPEQSGYYVLL 518


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/556 (41%), Positives = 331/556 (59%), Gaps = 16/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D V    +V  Y    S   A  LF ++ + N+ L    W+ +I GYA  G    A+ ++
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFL----WNVLIRGYAWNGPYEAAVQLY 164

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM   GL P+  T   +L  CA++ A+  G+E H + ++           D+ V  ALI
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQT------GWEKDVFVGAALI 218

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC  V  AR +FD I    RD   W  M+ +YSQNG  +  L+L  +M      ++
Sbjct: 219 DMYAKCGCVGSAREVFDKILV--RDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTG--LR 274

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P   TL  A+ A A  AAL  GR++H    R ++E     V   L+DMY++ G +  AR 
Sbjct: 275 PTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDK-VKTALVDMYAKCGSVRVARN 333

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F+ L  + VVSW +++TGY MHG   +A   F++M +    PD +TF+ +L ACSH G+
Sbjct: 334 LFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGL 392

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +++G  +F++M +++ I    +HY C+VDLLG + RLDEA  LI  M + P   +W ALL
Sbjct: 393 LEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALL 452

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           N C+IHANVELGE+A  RL+ELE +  G+Y +LSNIYA AG+W+ VA++R LM    +KK
Sbjct: 453 NSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKK 512

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
              CSW++ K     F  GD +HP S +IY  L  +   +K  GY P T    HDV+D+E
Sbjct: 513 SIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDE 572

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K +++  HSE+LA+A+G+++T PGT + ITKNLRIC DCH AI FIS I   EI +RD N
Sbjct: 573 KANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVN 632

Query: 819 RFHHFKEGSCTCKGYW 834
           R+HHFK+G C+C  YW
Sbjct: 633 RYHHFKDGVCSCGDYW 648



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 171/351 (48%), Gaps = 42/351 (11%)

Query: 24  TNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNL--THVPPSHLIAAYV 78
           +N    S   TP     + LL+ C   K++     +H Q+ +       V  + L+  Y 
Sbjct: 62  SNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYC 121

Query: 79  SHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTF 138
             ++ S A  L  RI     ++F WN LIR        + A +L+ QM   G  PD +TF
Sbjct: 122 VCDSLSSARLLFDRIPKH--NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTF 179

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
           PFVLKAC  L +   G  +H  +  +G++ +VFV  AL+ MYA+C  +  AR++FD++  
Sbjct: 180 PFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKIL- 238

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTW 256
             + D V WN+++AAY+Q+G  +  L L + M  TG   ++    +LV A+SA A     
Sbjct: 239 --VRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTG---LRPTEATLVTAISASADNAAL 293

Query: 257 SRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
            +G++                          CG +  A+ +FER+ VK VVSWNAM+TGY
Sbjct: 294 PQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGY 353

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           +  G   +A  LF++M +   K + +T+  V++  +  G   E    F  M
Sbjct: 354 AMHGHATEALDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEGWMFFETM 403



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 15/302 (4%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P      SLL  C +  A+  GK+ H                D ++   L+++Y  C 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGF------DTVIATKLVNLYCVCD 124

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           S+  AR++FD I PK+ ++  W V+I  Y+ NG    A+ L+ QMF  D  + P+ FT  
Sbjct: 125 SLSSARLLFDRI-PKH-NIFLWNVLIRGYAWNGPYEAAVQLYYQMF--DYGLVPDNFTFP 180

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L ACA L+A+  GR+IH +V++  +E  + FV   LIDMY++ G + +AR VFD +  
Sbjct: 181 FVLKACAALSAIEHGREIHEHVVQTGWEKDV-FVGAALIDMYAKCGCVGSAREVFDKILV 239

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           R+ V W S++  Y  +G  D       +M   GL P   T +  + A + +  + QG + 
Sbjct: 240 RDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGREL 299

Query: 586 FD-SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
              S  +EF    + +    +VD+  +   +  A  L E + ++   + W A++ G  +H
Sbjct: 300 HGLSWRQEFESHDKVK--TALVDMYAKCGSVRVARNLFERLGVKRV-VSWNAMITGYAMH 356

Query: 645 AN 646
            +
Sbjct: 357 GH 358


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 274/780 (35%), Positives = 410/780 (52%), Gaps = 58/780 (7%)

Query: 57   HQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLP 116
            H+ I   NL       +++AY S +   PA   L   SP   +  W   +   A   R  
Sbjct: 285  HKNIFSLNL-------ILSAYSS-SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTS 336

Query: 117  DNAFRLFLQMMRRGWHPDEYTFPFVLKACG-ELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
            D A  LF  M+  G  PD  T   VL   G  +PS      +H      G D++VFVCN 
Sbjct: 337  D-ALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS------LHPFAIKFGLDTHVFVCNT 389

Query: 176  LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
            L+  Y +   L+ AR++F EM      D V++N ++   ++ G     L LFA M     
Sbjct: 390  LLDAYCKHGLLAAARRVFLEMHDK---DAVTYNAMMMGCSKEGLHTQALQLFAAM----- 441

Query: 236  VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                                +SR     +++ +        V +V   N+++  YS+   
Sbjct: 442  ----------------RRAGYSR-HPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDC 484

Query: 296  FEDAFALFKKM-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             +D   LF +M  ++NV  NV+     IA YA        L +FR+MQ  G +  V+   
Sbjct: 485  LDDMRRLFDEMPERDNVSYNVI-----IAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 539

Query: 355  SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            ++LS   S+  + +GK+ H       L + G   +DL+  NALIDMY+KC  +D A+  F
Sbjct: 540  TMLSVAGSLPDVHIGKQIHAQ-----LVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNF 593

Query: 415  DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
               + K+    +WT +I  Y QNG   +AL LF  M +    ++P+  T S  + A + L
Sbjct: 594  SNRSEKS--AISWTALITGYVQNGQHEEALQLFSDMRRAG--LRPDRATFSSIIKASSSL 649

Query: 475  AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            A +  GRQ+H+Y++R+ Y+  + F  + L+DMY++ G +D A   FD + +RN +SW ++
Sbjct: 650  AMIGLGRQLHSYLIRSGYKSSV-FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 708

Query: 535  MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
            ++ Y  +G    A   F+ M   G  PD VTFL +L ACSH+G+ D+ +KYF  M  ++ 
Sbjct: 709  ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYS 768

Query: 595  ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
            IS   EHYAC++D LGR     +  +++  MP +  PIIW ++L+ CRIH N EL  +AA
Sbjct: 769  ISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAA 828

Query: 655  NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            ++L  +E      Y +LSNIYA AG+W+D A ++ +M+  GV+K  G SWV+ K+   +F
Sbjct: 829  DKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSF 888

Query: 715  FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
               D T P   +I + L  L + +   GY P  + ALH VD E K + L  HSE+LA+A+
Sbjct: 889  ASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAF 948

Query: 775  GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             ++ T  GTPIRI KNL  C DCH+ I  IS I+N +II+RDS RFHHFK+G C+C  YW
Sbjct: 949  ALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 284/859 (33%), Positives = 434/859 (50%), Gaps = 98/859 (11%)

Query: 44  LRQCKS---LTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           LR C S   L     +H +++   L       + L+ AY+S  A S A  LL+     P 
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP- 85

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR---GWH---PDEYTFPFVLKACGELPSSR 152
           +V   N ++    +     +A  LF +M RR    W+    D         +CG L    
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRE 145

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-C--------- 202
               +  +     F  +  V  AL+ M+ RC  + +A +LF ++ +P I C         
Sbjct: 146 LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYA 205

Query: 203 ------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
                             D+VSWN ++AA +QSG     L L   M     V+ D  +  
Sbjct: 206 KLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK-GVRLDSTTYT 264

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           ++L+ACA L +   GKQ        KV   +   D    +A++  Y++ GSF++A  +F 
Sbjct: 265 SSLTACARLFSLGWGKQL-----HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFN 319

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            ++  N     V+W+ +I G  Q     +++++F QM+   +  +   L +L+SGC +  
Sbjct: 320 SLQDRNS----VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRM 375

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--- 421
            L LG++ H   +K        H   ++V N+LI +YAKC  +  A  +F +++ ++   
Sbjct: 376 DLCLGRQLHSLCLK------SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVS 429

Query: 422 --------------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                                     R+  TW  M+G+Y Q+G   D L ++  M  Q K
Sbjct: 430 WTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ-K 488

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            V P+  T       CA + A + G QI  + ++    +L   VAN  I MYS+ G I  
Sbjct: 489 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVSVANAAITMYSKCGRISE 547

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A+ +FD L  ++VVSW +++TGY  HG+G +A   FD M  +G  PD ++++ +L  CSH
Sbjct: 548 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 607

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           SG+V +G  YFD M++  GIS   EH++C+VDLLGRA  L EA +LI+ MPM+PT  +W 
Sbjct: 608 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 667

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL+ C+IH N EL ELAA  + EL+S   GSY LL+ IY++AG+  D A++R LM+  G
Sbjct: 668 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 727

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PG SW++ +     F   D +HPQ   I   +  L+++I  +GYV   S       
Sbjct: 728 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTES------- 780

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
              + ++   HSEKLA+A+GI++     PI I KNLRICGDCH+ I  IS + + E ++R
Sbjct: 781 --PRSEI--HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIR 836

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D  RFHHFK GSC+C  YW
Sbjct: 837 DGVRFHHFKSGSCSCGDYW 855


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/556 (39%), Positives = 330/556 (59%), Gaps = 16/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D    N+++  Y + G+  DA  +F KM   +V    V+W+ +IAGYAQ     EA+ + 
Sbjct: 94  DAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV----VSWTYLIAGYAQNYMPAEAIGLL 149

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M      PN  T  SLL    + G   +G++ H       L+V  +  +D+ V +AL+
Sbjct: 150 PDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMH------ALAVKYNWDEDVYVGSALL 203

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYA+C+ +D+A ++FD +  KN    +W  +I  +++       L  F +M  Q     
Sbjct: 204 DMYARCEQMDMAIMVFDRLVSKNE--VSWNALIAGFARKADGETTLMKFAEM--QRNGFG 259

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
              FT S    A AR+ AL  GR +HA+++++  + L  FV N ++ MY++SG +  AR 
Sbjct: 260 ATHFTYSSMFSAFARIGALEQGRWVHAHLIKSG-QKLTAFVGNTMLGMYAKSGSMVDARK 318

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD + +R++V+W +++T    +GLG +A   F+++RK G+  + +TFL +L ACSH G+
Sbjct: 319 VFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGL 378

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +G  YFD M K++ +    +HY   VDLLGRA  L EA+  +  MPMEPT  +W ALL
Sbjct: 379 VKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALL 437

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR+H N ++G+ AA+ + EL+ +  G   LL NIYA+ G+W D AR+R +MK TGVKK
Sbjct: 438 GACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKK 497

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P CSWVQ +     F   D THP+S  IY +   +  RIK  GYVP T+  L  ++++E
Sbjct: 498 EPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQE 557

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           +   L  HSEK+ALA+ ++    G  IRI KN+RICGDCHSA  ++S +   EI++RD+N
Sbjct: 558 RETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTN 617

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHF EGSC+C  YW
Sbjct: 618 RFHHFSEGSCSCGDYW 633



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 203/444 (45%), Gaps = 35/444 (7%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P    +  ++ AC +  +     ++HA +  S    + F+ N+L+ MY +C  +S AR +
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHV 117

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD+M      D+VSW  ++A YAQ+      + L   M    + + +G +  + L A  +
Sbjct: 118 FDKMPSR---DVVSWTYLIAGYAQNYMPAEAIGLLPDML-RARFRPNGFTFTSLLKATGA 173

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
            G  S G+Q   +       E     DV   +A++  Y+R    + A  +F ++    V 
Sbjct: 174 CGGCSIGEQMHALAVKYNWDE-----DVYVGSALLDMYARCEQMDMAIMVFDRL----VS 224

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            N V+W+A+IAG+A++  G   L  F +MQ  G      T  S+ S  A +GAL  G+  
Sbjct: 225 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 284

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H + IK    +         V N ++ MYAK  S+  AR +FD +    RD+ TW  M+ 
Sbjct: 285 HAHLIKSGQKLTA------FVGNTMLGMYAKSGSMVDARKVFDRM--DKRDLVTWNTMLT 336

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ----IHAYVL 488
           + +Q G   +A+A F ++ +    ++ N  T    L AC+    ++ G+     +  Y +
Sbjct: 337 ALAQYGLGKEAVAHFEEIRKCG--IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNV 394

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           + + +  + FV     D+  R+G +  A + VF    +     W +L+    MH      
Sbjct: 395 QPEIDHYVSFV-----DLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMG 449

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLY 571
            +A D + +  L PD     VLLY
Sbjct: 450 QYAADHVFE--LDPDDTGPPVLLY 471



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 178/412 (43%), Gaps = 66/412 (16%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y    A S A  +  ++ PS   V  W  LI    +  +P  A  L   M+R  + 
Sbjct: 101 LIHMYCKCGAVSDARHVFDKM-PSR-DVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFR 158

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ +TF  +LKA G       G  +HA+     +D +V+V +AL+ MYARC+ +  A  +
Sbjct: 159 PNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMV 218

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD +      + VSWN ++A +A+  D E  LM FA M  +        +  +  SA A 
Sbjct: 219 FDRLVSK---NEVSWNALIAGFARKADGETTLMKFAEMQRN-GFGATHFTYSSMFSAFAR 274

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
           +G   +G+                          + G M +A+KVF+RM  +D+V+WN M
Sbjct: 275 IGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTM 334

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           +T  ++ G  ++A A F+++R+  ++LN +T+ +V+   +  G   E    F  M+   +
Sbjct: 335 LTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNV 394

Query: 347 EPNV---VTLVSLLS-------------------GCASVGALLLGKETH------CYTIK 378
           +P +   V+ V LL                      A  GALL     H       Y   
Sbjct: 395 QPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAAD 454

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKC-KSVDVARV--MFDAIAPKNRDVATW 427
            V  +D   PDD      L ++YA   K  D ARV  M  A   K     +W
Sbjct: 455 HVFELD---PDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSW 503



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 15/237 (6%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           + ACA+   L   R IHA++ R+       F+ N LI MY + G +  AR VFD +  R+
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAG-DAFLLNSLIHMYCKCGAVSDARHVFDKMPSRD 125

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VVSWT L+ GY  + +  +A      M +    P+G TF  LL A    G    G +   
Sbjct: 126 VVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG-EQMH 184

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           +++ ++         + ++D+  R  ++D A+ + + + +    + W AL+ G    A+ 
Sbjct: 185 ALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL-VSKNEVSWNALIAGFARKAD- 242

Query: 648 ELGELAANRLLELESEKDG----SYTLLSNIYA-----NAGRWKDVARIRSLMKHTG 695
             GE    +  E++    G    +Y+ + + +A       GRW     I+S  K T 
Sbjct: 243 --GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 297


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/600 (39%), Positives = 341/600 (56%), Gaps = 53/600 (8%)

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           +Q D   L   +++C      ++      M+ A ++FE +   D+V +N+M  GYSR  +
Sbjct: 54  LQNDLQILTKLINSC------TQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNA 107

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A +LF K    N                                   L P+  T  S
Sbjct: 108 PLKAISLFIKALNYN-----------------------------------LLPDDYTFPS 132

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL  C    A   GK+ HC  IK  L+      ++  V   LI+MYA C  VD A+ +FD
Sbjct: 133 LLKACVVAKAFQQGKQLHCLAIKLGLN------ENPYVCPTLINMYAGCNDVDGAQRVFD 186

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            I      V ++  +I  Y+++   N+AL+LF Q+  Q + +KPN  T+   L +CA L 
Sbjct: 187 EILEPC--VVSYNAIITGYARSSRPNEALSLFRQL--QARKLKPNDVTVLSVLSSCALLG 242

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           AL  G+ IH YV +N  +  +  V   LIDMY++ G +D A  VF+++  R+  +W++++
Sbjct: 243 ALDLGKWIHEYVKKNGLDKYVK-VNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMI 301

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
             Y MHG G      F++M +  + PD +TFL LLYACSH+G+VD+G +YF SMS+ +GI
Sbjct: 302 VAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGI 361

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
               +HY C+VDLLGRA  L EA + I+ +P++PTPI+W  LL+ C  H N+EL +   N
Sbjct: 362 IPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMN 421

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
           ++LEL+    G Y +LSN+ A AG+W+DV  +R LM H G  K PGCS ++       FF
Sbjct: 422 QILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFF 481

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEHSEKLALAY 774
            GD  H  S  ++  L  LV+ +K++GYVP TS  +H D++DEEK   L  HSEKLA+++
Sbjct: 482 SGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISF 541

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G+L T PGT IR+ KNLR+CGDCHSA   IS +I+ EIILRD  RFHHFK+G C+C  YW
Sbjct: 542 GLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 176/376 (46%), Gaps = 68/376 (18%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P  +  +N++ R   R   P  A  LF++ +     PD+YTFP +LKAC    + + G
Sbjct: 88  PQP-DIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQG 146

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +H +    G + N +VC  L+ MYA C+ +  A+++FDE+ +P  C +VS+N I+  Y
Sbjct: 147 KQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEP--C-VVSYNAIITGY 203

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------- 260
           A+S      L LF ++    K++ + V++++ LS+CA LG    GK              
Sbjct: 204 ARSSRPNEALSLFRQLQAR-KLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKY 262

Query: 261 ------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                       +CG ++ A  VFE M V+D  +W+AM+  Y+  G  +D  ++F++M +
Sbjct: 263 VKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMAR 322

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNV------VTLV------- 354
             V+ + +T+  ++   +  G   E    F  M +  G+ P +      V L+       
Sbjct: 323 AKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLH 382

Query: 355 -------------------SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
                              +LLS C+S G L L K+     + ++L +D SH  D ++++
Sbjct: 383 EAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQ----VMNQILELDDSHGGDYVILS 438

Query: 396 ALIDMYAKCKSVDVAR 411
            L     K + VD  R
Sbjct: 439 NLCARAGKWEDVDTLR 454



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 195/423 (46%), Gaps = 83/423 (19%)

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
           ++ YA QLF+ + QP   DIV +N++   Y++S      + LF +   +  +  D  +  
Sbjct: 76  SMDYAHQLFEAIPQP---DIVLFNSMFRGYSRSNAPLKAISLFIKAL-NYNLLPDDYTFP 131

Query: 245 NALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVK 278
           + L AC     + +GKQ                          C  ++ A++VF+ +   
Sbjct: 132 SLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEP 191

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            VVS+NA++TGY+R     +A +LF++++   +K                          
Sbjct: 192 CVVSYNAIITGYARSSRPNEALSLFRQLQARKLK-------------------------- 225

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN-AL 397
                    PN VT++S+LS CA +GAL LGK  H Y  K  L       D  + +N AL
Sbjct: 226 ---------PNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL-------DKYVKVNTAL 269

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMYAKC S+D A  +F++++   RD   W+ MI +Y+ +G   D +++F +M +    V
Sbjct: 270 IDMYAKCGSLDGAISVFESMSV--RDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAK--V 325

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDT 515
           +P+  T    L AC+    +  G + + Y +   Y  +IP + +  C++D+  R+G +  
Sbjct: 326 QPDEITFLGLLYACSHTGLVDEGFR-YFYSMSEVYG-IIPGIKHYGCMVDLLGRAGLLHE 383

Query: 516 ARVVFDNLKQRNV-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           A    D L  +   + W +L++    HG  + A    +Q+  E     G  +++L   C+
Sbjct: 384 AYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQIL-ELDDSHGGDYVILSNLCA 442

Query: 575 HSG 577
            +G
Sbjct: 443 RAG 445



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 24/270 (8%)

Query: 443 ALALFPQMFQQDKLVKPNAF--TLSCALMAC-ARLAALRFGRQIHAYV----LRNQYEML 495
           A A FP + QQ      + +  T   +L++C  +  +L+  +QI A+     L+N  ++L
Sbjct: 2   ATAPFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQIL 61

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
              + +C  +  + S  +D A  +F+ + Q ++V + S+  GY       KA   F +  
Sbjct: 62  TKLINSCTQNPTTAS--MDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKAL 119

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
              L PD  TF  LL AC  +    QG K    ++ + G++        ++++    N +
Sbjct: 120 NYNLLPDDYTFPSLLKACVVAKAFQQG-KQLHCLAIKLGLNENPYVCPTLINMYAGCNDV 178

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           D A  + + + +EP  + + A++ G    ++     L+  R L+    K    T+LS + 
Sbjct: 179 DGAQRVFDEI-LEPCVVSYNAIITG-YARSSRPNEALSLFRQLQARKLKPNDVTVLSVLS 236

Query: 676 ANA-------GRWKDVARIRSLMKHTGVKK 698
           + A       G+W     I   +K  G+ K
Sbjct: 237 SCALLGALDLGKW-----IHEYVKKNGLDK 261


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/682 (36%), Positives = 372/682 (54%), Gaps = 33/682 (4%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H ++   G   + ++ N L+          YA  +F +   P   +I  +NT++     +
Sbjct: 23  HCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHP---NIFLYNTLIRGMVSN 79

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
                 + ++A M        D  +    L AC  L  +      G+          + +
Sbjct: 80  DAFRDAVSVYASMRQH-GFAPDNFTFPFVLKACTRLPHYF---HVGLS------LHSLVI 129

Query: 278 KDVVSWNAMV-TG----YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           K    W+  V TG    YS+ G   DA  +F ++ ++NV    V+W+A+I GY + G   
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNV----VSWTAIICGYIESGCFG 185

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EAL +FR +   GL P+  TLV +L  C+ VG L  G+    Y     +   GS   ++ 
Sbjct: 186 EALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGY-----MRESGS-VGNVF 239

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  +L+DMYAKC S++ AR +FD +  K  DV  W+ +I  Y+ NG   +AL +F +M  
Sbjct: 240 VATSLVDMYAKCGSMEEARRVFDGMVEK--DVVCWSALIQGYASNGMPKEALDVFFEM-- 295

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           Q + V+P+ + +     AC+RL AL  G      +  +++ +  P +   LID Y++ G 
Sbjct: 296 QRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEF-LSNPVLGTALIDFYAKCGS 354

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           +  A+ VF  +++++ V + ++++G  M G    A   F QM K G+ PDG TF+ LL  
Sbjct: 355 VAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCG 414

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+H+G+VD G +YF  MS  F ++   EHY C+VDL  RA  L EA +LI  MPME   I
Sbjct: 415 CTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSI 474

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W ALL GCR+H + +L E    +L+ELE    G Y LLSNIY+ + RW +  +IRS + 
Sbjct: 475 VWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLN 534

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
             G++K PGCSWV+       F VGD +HP S KIYE L  L + ++  GY P T F L 
Sbjct: 535 QKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLF 594

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           DV++EEK   L  HSEKLA+A+ +++T     IR+ KNLR+CGDCH AI  +S +   EI
Sbjct: 595 DVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREI 654

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           I+RD+NRFHHF EGSC+C+ YW
Sbjct: 655 IVRDNNRFHHFTEGSCSCRDYW 676



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 256/564 (45%), Gaps = 95/564 (16%)

Query: 45  RQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           +QC  L     +HQ   + NL      H         A +   +++   +P P ++F +N
Sbjct: 20  KQCHCLLLRLGLHQDTYLINLLLRSSLHF--------AATQYATVVFAQTPHP-NIFLYN 70

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS-RCGSSVHAVICS 163
            LIR  V      +A  ++  M + G+ PD +TFPFVLKAC  LP     G S+H+++  
Sbjct: 71  TLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIK 130

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           +GFD +VFV   L+ +Y++   L+ AR++FDE+ +    ++VSW  I+  Y +SG     
Sbjct: 131 TGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEK---NVVSWTAIICGYIESGCFGEA 187

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------------- 260
           L LF R   ++ ++ D  +LV  L AC+ +G  + G+                       
Sbjct: 188 LGLF-RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVD 246

Query: 261 ---QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              +CG MEEA++VF+ M  KDVV W+A++ GY+  G  ++A  +F +M++ENV+     
Sbjct: 247 MYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVR----- 301

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
                                         P+   +V + S C+ +GAL LG        
Sbjct: 302 ------------------------------PDCYAMVGVFSACSRLGALELGNWA----- 326

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
            R L        + ++  ALID YAKC SV  A+ +F  +  + +D   +  +I   +  
Sbjct: 327 -RGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGM--RRKDCVVFNAVISGLAMC 383

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G    A  +F QM +    ++P+  T    L  C     +  G +  + +  +    + P
Sbjct: 384 GHVGAAFGVFGQMVKVG--MQPDGNTFVGLLCGCTHAGLVDDGHRYFSGM--SSVFSVTP 439

Query: 498 FVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            + +  C++D+ +R+G +  A+ +  ++  + N + W +L+ G  +H     A     Q+
Sbjct: 440 TIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQL 499

Query: 555 RKEGLAPDGVTFLVLL---YACSH 575
            +  L P      VLL   Y+ SH
Sbjct: 500 IE--LEPWNSGHYVLLSNIYSASH 521


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/682 (37%), Positives = 391/682 (57%), Gaps = 26/682 (3%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA I +   D N F+ N L+  Y++  +L  A+  F  +    + +  SWN ++AAYAQ
Sbjct: 54  LHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRIT---LHNAHSWNILMAAYAQ 110

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +G   G   LF  M     V+ + V+L  AL AC +    + G++   +  +    E ++
Sbjct: 111 NGHPRGAATLFHWMCSQ-GVRPNAVTLSTALLACTAARNLALGRKLNELIAS----EALE 165

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           +   V  ++++T Y R    E+A   F +  +++V    V W+A+I+ YA       AL+
Sbjct: 166 IDSHVE-SSLITMYGRCREIEEAERAFDRSPEKDV----VCWTAMISAYAHNWRTSRALE 220

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           + R+M   G++  + T VSLL  CAS   L  G   H    +R  ++ G      +V   
Sbjct: 221 LVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFH----QRAAAI-GLDRSSTVVAGT 275

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+++Y KC  VD AR + DA+    R   +WT MI +Y+QNG A +A+ LF  M  +   
Sbjct: 276 LVNLYGKCGRVDDARRVLDAMPV--RTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEG-- 331

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            +P+  TL   + +CA L  L  G++IHA +  +        + N +I MY + G+++ A
Sbjct: 332 AEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELA 391

Query: 517 RVVFD--NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYAC 573
           R VF+   L+ R+VV+WT+++  Y  +G+G++A   F +M  +G   P+ VTFL +L AC
Sbjct: 392 REVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCAC 451

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPI 632
           SH G ++Q  ++F SM  +FG+    +HY C+VDLLGRA RL EA +L+      E   +
Sbjct: 452 SHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVV 511

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
            W+A L+ C+++ ++E  + AA R+ ELE E      LLSN+YA  GR  DVARIR+ MK
Sbjct: 512 CWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMK 571

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
            +GVKK  G SW++       F V D +HP+  +IY  L  L + IK  GYVP T   L 
Sbjct: 572 SSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLR 631

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           DVD+E+K  LL  HSE+LA+A GI++T PGT +R+ KNLR+C DCH+A  FIS I+  +I
Sbjct: 632 DVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQI 691

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           I+RD++RFHHFK+G C+C  YW
Sbjct: 692 IVRDTSRFHHFKDGVCSCGDYW 713



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 154/565 (27%), Positives = 249/565 (44%), Gaps = 92/565 (16%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LL QC+ L +V  +H QI  + L       + L+ AY  H +   A     RI+    + 
Sbjct: 41  LLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITL--HNA 98

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
             WN L+    +   P  A  LF  M  +G  P+  T    L AC    +   G  ++ +
Sbjct: 99  HSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNEL 158

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I S   + +  V ++L+ MY RC  +  A + FD   +    D+V W  +++AYA +   
Sbjct: 159 IASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEK---DVVCWTAMISAYAHNWRT 215

Query: 221 EGGLMLFARMTGDVKVQGDGVSL---VNALSACASLGTWSRG------------------ 259
              L L  RM     ++G  + L   V+ L ACAS      G                  
Sbjct: 216 SRALELVRRM----DLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTV 271

Query: 260 ---------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                     +CG +++A++V + M V+  VSW AM+  Y++ G+  +A  LF+ M  E 
Sbjct: 272 VAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLE- 330

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
                                             G EP+ +TL+S++  CA +G L LGK
Sbjct: 331 ----------------------------------GAEPSDITLISVVDSCAVLGTLSLGK 356

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H     R+ S   S    LM++NA+I MY KC ++++AR +F+ +  + R V TWT M
Sbjct: 357 RIH----ARIRS-SPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAM 411

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I +Y+QNG   +A+ LF +M   D   +PN  T    L AC+ L  L    Q   +    
Sbjct: 412 IRAYAQNGVGEEAIELFQEML-IDGGTEPNRVTFLSVLCACSHLGQL---EQAWEHFCSM 467

Query: 491 QYEMLIPFVAN---CLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGD 545
             +  +P   +   CL+D+  R+G +  A  +    K  + +VV W + ++   M+G  +
Sbjct: 468 GPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLE 527

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLL 570
           ++  A  ++ +  L P+ V   VLL
Sbjct: 528 RSQRAAKRVSE--LEPENVAGRVLL 550


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/758 (33%), Positives = 402/758 (53%), Gaps = 27/758 (3%)

Query: 78  VSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT 137
           +SH A       L  +  SP   F  N +IR      LP+ A   +  M+  G  PD +T
Sbjct: 51  LSHAAAGRMHDALAAVRSSP-DAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFT 109

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           FP V+K C  L +   G + H+     G   S V+  N+L+A YA+   ++ A ++FD M
Sbjct: 110 FPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGM 169

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
               + DIV+WN++V  Y  +G     L  F  M   ++VQ DGV ++ AL+AC      
Sbjct: 170 ---PVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSAL 226

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
            +G+     E    V      +DV    +++  Y + G+   A  +F  M    V    V
Sbjct: 227 MQGR-----EVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTV----V 277

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           TW+ +I GYA  G   EA D F QM+  G +  VVT ++LL+ CA   + L G+  H Y 
Sbjct: 278 TWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYV 337

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            +            +++  AL++MY+K   V  +  +F  +   N+ + +W  MI +Y  
Sbjct: 338 TR------SQFLPHVVLETALLEMYSKVGKVKSSETIFGQMT--NKTLVSWNNMIAAYMY 389

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
               N+A+ LF ++  Q   + P+ FT+S  + A   L  LR  RQ+H+Y++R  Y    
Sbjct: 390 KEMYNEAITLFLELLNQP--LYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENT 447

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             V N ++ MY+R GD+ ++R +FD +  ++V+SW +++ GY +HG G  A   F +M+ 
Sbjct: 448 -LVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKS 506

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            GL P+  TF+ +L ACS SGM D+G   F+ M +++GI  + EHY C+ DLLGRA  L 
Sbjct: 507 NGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLR 566

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           E ++ IE +P+ PT  IW +LL   R   ++++ E AA R+ ELE +  G Y +LS++YA
Sbjct: 567 EVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYA 626

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
           +AGRW+DV RIRS M   G+++    S V+    + +F  GD THPQS+ I+E+   L +
Sbjct: 627 DAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSDVLSR 686

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           +I    Y    S  +       +  +  +HS +LA+ +G++++    PI + KN+RIC  
Sbjct: 687 KIGETDYPRNLSDPISLT--SRRTIIPNKHSVRLAVVFGLISSEARAPILVKKNVRICNH 744

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CH A+  IS      I++ D+N +H F +GSC C  YW
Sbjct: 745 CHHALKLISKYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/776 (32%), Positives = 393/776 (50%), Gaps = 108/776 (13%)

Query: 154 GSSVHAVICSSGFD-SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           G ++H  +   G D S+  V +A M  Y RC +L +A +LFDEM +    D ++WN IV 
Sbjct: 6   GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKR---DDLAWNEIVM 62

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC---------- 262
              +SG+ E  + LF  M        D  ++V  L  C++   ++ G+Q           
Sbjct: 63  VNLRSGNWEKAVELFREMQFSGAKAYDS-TMVKLLQVCSNKEGFAEGRQIHGYVLRLGLE 121

Query: 263 ----------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                           G +E ++KVF  MK +++ SWN++++ Y+++G  +DA  L  +M
Sbjct: 122 SNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEM 181

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
               +K ++VTW+++++GYA +G   +A+ V ++MQ  GL+P+  ++ SLL   A  G L
Sbjct: 182 EICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHL 241

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN----- 421
            LGK  H Y ++  L        D+ V   LIDMY K   +  AR++FD +  KN     
Sbjct: 242 KLGKAIHGYILRNQLWY------DVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWN 295

Query: 422 ----------------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
                                        D  TW  +   Y+  G    AL +  +M  +
Sbjct: 296 SLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKM--K 353

Query: 454 DKLVKPNAFTLSCALMACAR-----------------------------------LAALR 478
           +K V PN  + +     C++                                   L+ L 
Sbjct: 354 EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLH 413

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            G+++H + LR    +   +VA  L+DMY +SGD+ +A  +F  +K +++ SW  ++ GY
Sbjct: 414 SGKEVHGFCLRKNL-ICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGY 472

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
            M G G++   AF  M + G+ PD +TF  +L  C +SG+V +G KYFD M   +GI   
Sbjct: 473 AMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPT 532

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EH +C+VDLLGR+  LDEA + I+ M ++P   IW A L+ C+IH ++EL E+A  RL 
Sbjct: 533 IEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQ 592

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
            LE     +Y ++ N+Y+N  RW+DV RIR+LM++  V+ +   SW+Q  +    F+   
Sbjct: 593 VLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEG 652

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
           +THP    IY  L  LV  +K  GYVP TS    D+ D EK  LL  H+EKLA+ YG++ 
Sbjct: 653 KTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIK 712

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                PIR+ KN  IC D H+   ++S++ N EI+L++  R HHF++G C+C   W
Sbjct: 713 KKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/584 (39%), Positives = 334/584 (57%), Gaps = 50/584 (8%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           MV  Y+  G  + + ++F  + + +  L    ++++I  YA+ G     +  +  M   G
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIGEPSSLL----FNSMIRAYARYGFAERTVATYFSMHSWG 166

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
              +  T   +L     + ++ +GK  H   ++  L  D      L V  +LI +Y KC 
Sbjct: 167 FTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD------LYVATSLIILYGKCG 220

Query: 406 SVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQ 436
            ++ A  +FD +  ++                             R++ +WT MI  YSQ
Sbjct: 221 EINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQ 280

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR----NQY 492
           +G A  AL+LF +M ++D  V+PN  T+   L ACA+L+ L  GRQIH    R    +  
Sbjct: 281 SGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNA 340

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWA 550
            +LI   A     MY++ G +  AR  FD L   ++N+++W +++T Y  +G G +A   
Sbjct: 341 SVLIALTA-----MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 395

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M + G+ PD +TF  LL  CSHSG+VD GLKYF+ MS  + I+ R EHYAC+ DLLG
Sbjct: 396 FREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLG 455

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA RL EA +L+  MPM   P IW +LL  CR H N+E+ E AA +L  LE E  G+Y L
Sbjct: 456 RAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVL 515

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSN+YA AGRW++V ++R+++K  G KK PGCSW++       F  GD +HPQ ++IY  
Sbjct: 516 LSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMF 575

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L +++KA GY P TS+ LHD+ +EEK   L  HSEKLA+A+GIL T   T +R+TKN
Sbjct: 576 LEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKN 635

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LRICGDCH+A+ FIS I   E+I+RD NRFHHFK G C+C  YW
Sbjct: 636 LRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 192/396 (48%), Gaps = 44/396 (11%)

Query: 9   PLLKSKTPLTLNHLFTNI-KLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQ---QIIVQN 64
           P   S +PLT++    N+ +  S    P I   + + +    L  + L HQ    ++++ 
Sbjct: 41  PFKCSISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRG 100

Query: 65  L--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRL 122
           L  T +  S ++A Y S      ++S+   I   P S+ + N++IR   R    +     
Sbjct: 101 LQPTALVGSKMVAFYASSGDIDSSVSVFNGIG-EPSSLLF-NSMIRAYARYGFAERTVAT 158

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
           +  M   G+  D +TFPFVLK+  EL S   G  VH +I   G   +++V  +L+ +Y +
Sbjct: 159 YFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGK 218

Query: 183 CDTLSYARQLFDEM---------------FQPGICD-------------IVSWNTIVAAY 214
           C  ++ A ++FD M                + G  D             IVSW T+++ Y
Sbjct: 219 CGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY 278

Query: 215 AQSGDAEGGLMLFARMTG-DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           +QSG A+  L LF  M   D  V+ + V++++ L ACA L T  RG+Q  + E A ++  
Sbjct: 279 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ--IHELACRMGL 336

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                 +++  AM   Y++ GS  DA   F K+ +   + N++ W+ +I  YA  GHG +
Sbjct: 337 NSNASVLIALTAM---YAKCGSLVDARNCFDKLNRN--EKNLIAWNTMITAYASYGHGLQ 391

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           A+  FR+M   G++P+ +T   LLSGC+  G + +G
Sbjct: 392 AVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L  L+ G Q+HA++L    +     V + ++  Y+ SGDID++  VF+ + + + + + S
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQP-TALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNS 141

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++  Y  +G  ++    +  M   G   D  TF  +L +      V  G K    +    
Sbjct: 142 MIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG-KCVHGLILRI 200

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           G+         ++ L G+   +++A ++ + M +      W ALL G
Sbjct: 201 GLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS-SWNALLAG 246


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/779 (33%), Positives = 389/779 (49%), Gaps = 103/779 (13%)

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
           + R    +H++   +G   +  V  AL+ + AR        +L  E  + G  D V WN 
Sbjct: 67  ARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNK 126

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------- 261
            VA  A++ + +  + +F  M     V  DG +    L AC   G    G+         
Sbjct: 127 HVAMLAEAEEWDEAIAVFREMQAR-GVPADGYTCARVLHACGRAGALREGRAVHAYALKL 185

Query: 262 ------------CGMMEE------AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
                        GM  E      A +V + M    VV WNA+V   +R+G  +DA  L 
Sbjct: 186 ALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELA 245

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            +M +   + NV TW+ V++G ++ G   EAL V   M   GL P+  T+ SLL   A+ 
Sbjct: 246 ARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANT 305

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA----- 418
           G L  G E HC+ ++  L        D+    AL+DMYAKC  +D A+ + DA+      
Sbjct: 306 GLLRHGMEIHCFFLRNQLE------PDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLT 359

Query: 419 -------------------------PKNR---DVATWTVMIGSYSQNGGANDALALFPQM 450
                                     KNR   D+ TW  +I  YS NG ++ A+ L  Q+
Sbjct: 360 TWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQI 419

Query: 451 ----------------------------------FQQDKLVKPNAFTLSCALMACARLAA 476
                                              Q+D  V+P+  T+S  L ACA LA 
Sbjct: 420 KAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDG-VQPSLVTMSVLLRACAGLAL 478

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
            + G+++H + LR  Y+  +  V+  LIDMYS+ G + +A+V+F++++Q+N+V   +++T
Sbjct: 479 QKKGKELHCFALRRAYDCDM-VVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLT 537

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
           G  +HG G +A   F  M   GL PD +TF  LL AC   G+V +G +YFDSM  ++G+ 
Sbjct: 538 GLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVK 597

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
              E+YAC+VDLL R   LDEA++ IE  P++P    W ALL GC IH N+ L E+AA  
Sbjct: 598 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 657

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           L  LE     +Y L+ N+Y     + +   ++  MK  GV  RPG SW+Q ++G   F V
Sbjct: 658 LFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEV 717

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
             + HP++ +IYE L  LV +IK  GYVP TS   ++V +EEK  LL  H+EKLA+ YG+
Sbjct: 718 DGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGL 777

Query: 777 L-TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + + A   P+R+ KN R+C DCH     IS + + +IILRD+ RFHHF +G C+C  YW
Sbjct: 778 IRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/552 (41%), Positives = 330/552 (59%), Gaps = 38/552 (6%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N   W+A+I GYA +G   E++ ++  M+  G+ P   T  +LL  C++   + LG++ H
Sbjct: 103 NPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVH 162

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------ 421
             TI     + G    DL V N LIDMY KC  +     +FD +  ++            
Sbjct: 163 TQTI-----LIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYA 217

Query: 422 -----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
                            +D+  WT M+  Y+QN    +AL +F +M  Q   VK +  TL
Sbjct: 218 KVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERM--QAAGVKTDEVTL 275

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQY-EMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
              + ACA+L A ++   +     ++ +       V + LIDMY++ G ++ A  VF+ +
Sbjct: 276 VGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           ++RNV S++S++ G+ MHGL   A   FD+M K  + P+ VTF+ +L ACSH+GMV+QG 
Sbjct: 336 EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQ 395

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           + F  M +  G++   +HYAC+VDLLGRA RL+EA+ L++ MPM P   +W ALL  CRI
Sbjct: 396 QLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRI 455

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N ++ ++AA+ L ELE    G+Y LLSNIYA+AGRW DV+++R LM+  G+KK PGCS
Sbjct: 456 HGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCS 515

Query: 704 WVQGKEGTA-TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           WV+GK+G    FF GD +HP+S++I + L  L+ R+K +GY P  S   +D+ DEEK  L
Sbjct: 516 WVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRL 575

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLALA+G+LTT  G  IRI KNLRIC DCHS +   S I   EI++RD+ RFHH
Sbjct: 576 LMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHH 635

Query: 823 FKEGSCTCKGYW 834
           F++G C+C  +W
Sbjct: 636 FRDGRCSCGNFW 647



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 220/466 (47%), Gaps = 63/466 (13%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL--SYARQLFDEMFQ 198
           VL  C  +   +    VHA I   G +   FV   L+    + D     Y R +F ++  
Sbjct: 45  VLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG---VSLVNALSACASLGT 255
           P   +   W  ++  YA  G     ++L+  M    + QG G    +    L AC++   
Sbjct: 102 P---NPFLWTALIRGYALQGPFMESVLLYNSM----RRQGIGPVSFTFTALLKACSAALD 154

Query: 256 WSRGKQ---------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
            + G+Q                           CG +    +VF+ M  +DV+SW +++ 
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y+++G+ E A  LF  +  +    ++V W+A++ GYAQ     EAL+VF +MQ  G++ 
Sbjct: 215 AYAKVGNMEAASELFDGLPMK----DMVAWTAMVTGYAQNARPREALEVFERMQAAGVKT 270

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMYAKCKSV 407
           + VTLV ++S CA +GA       +   ++ V    G  P  +++V +ALIDMYAKC SV
Sbjct: 271 DEVTLVGVISACAQLGA-----AKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSV 325

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + A  +F+ +  + R+V +++ MI  ++ +G A  A+ LF +M + +  +KPN  T    
Sbjct: 326 EDAYKVFERM--EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTE--IKPNRVTFIGV 381

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQ 525
           L AC+    +  G+Q+  + +  +   + P   +  C++D+  R+G ++ A  +   +  
Sbjct: 382 LTACSHAGMVEQGQQL--FAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPM 439

Query: 526 R-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
             +   W +L+    +HG  D A  A   + +  L P+G+   +LL
Sbjct: 440 NPHGGVWGALLGACRIHGNPDMAQIAASHLFE--LEPNGIGNYILL 483



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 202/457 (44%), Gaps = 61/457 (13%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHV--PPSHLIAAYVSHNAP---SPALSLLQRISPSP 97
           +L  C  + QV  +H  I  + L       + L+      + P    P L   Q   P+P
Sbjct: 45  VLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNP 104

Query: 98  FSVFWWNALIRRAVRLRLP-DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
           F    W ALIR    L+ P   +  L+  M R+G  P  +TF  +LKAC        G  
Sbjct: 105 F---LWTALIR-GYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQ 160

Query: 157 VHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           VH   I   GF S+++V N L+ MY +C  L    ++FDEM      D++SW +++ AYA
Sbjct: 161 VHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDR---DVISWTSLIVAYA 217

Query: 216 QSGDAEGGLMLF------------ARMTGDVK------------------VQGDGVSLVN 245
           + G+ E    LF            A +TG  +                  V+ D V+LV 
Sbjct: 218 KVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVG 277

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            +SACA LG     K    + +  +        +VV  +A++  Y++ GS EDA+ +F++
Sbjct: 278 VISACAQLGA---AKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M +     NV ++S++I G+A  G    A+++F +M    ++PN VT + +L+ C+  G 
Sbjct: 335 MEER----NVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGM 390

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           +  G++        +    G  P +      ++D+  +   ++ A  +   + P N    
Sbjct: 391 VEQGQQ----LFAMMEECHGVAPSEDHYA-CMVDLLGRAGRLEEALNLVK-MMPMNPHGG 444

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            W  ++G+   +G  + A      +F+    ++PN  
Sbjct: 445 VWGALLGACRIHGNPDMAQIAASHLFE----LEPNGI 477



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 141/327 (43%), Gaps = 38/327 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++    +   P  A  +F +M   G   DE T   V+ AC +L +++  + V  V  
Sbjct: 240 WTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAE 299

Query: 163 SSGF--DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
            SGF   SNV V +AL+ MYA+C ++  A ++F+ M +    ++ S+++++  +A  G A
Sbjct: 300 QSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEER---NVYSYSSMIVGFAMHGLA 356

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKD 279
              + LF  M    +++ + V+ +  L+AC+  G   +G+Q   MMEE   V        
Sbjct: 357 GAAMELFDEML-KTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGV-----APS 410

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
              +  MV    R G  E+A  L K M    +  +   W A++   A R HG+  +    
Sbjct: 411 EDHYACMVDLLGRAGRLEEALNLVKMM---PMNPHGGVWGALLG--ACRIHGNPDMAQIA 465

Query: 340 QMQFCGLEPNVVTLVSLLSGC-ASVG-------------ALLLGKETHCY-------TIK 378
                 LEPN +    LLS   AS G             A  L K   C         I 
Sbjct: 466 ASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIH 525

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCK 405
              + D SHP    +  AL D+  + K
Sbjct: 526 EFFAGDMSHPKSREIKQALEDLLDRLK 552



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 7/219 (3%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT-ARVVFDNLKQRNVVSWTSLMTGYG 539
           +Q+HA++ R   E     +A  L  +      +D   R+VF  ++  N   WT+L+ GY 
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYA 115

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           + G   ++   ++ MR++G+ P   TF  LL ACS +  V+ G +         G  +  
Sbjct: 116 LQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDL 175

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
                ++D+  +   L     + + M ++   I W +L+       N+E    AA+ L +
Sbjct: 176 YVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIVAYAKVGNME----AASELFD 230

Query: 660 LESEKDG-SYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
               KD  ++T +   YA   R ++   +   M+  GVK
Sbjct: 231 GLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/779 (33%), Positives = 389/779 (49%), Gaps = 103/779 (13%)

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
           + R    +H++   +G   +  V  AL+ + AR        +L  E  + G  D V WN 
Sbjct: 67  ARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNK 126

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------- 261
            VA  A++ + +  + +F  M     V  DG +    L AC   G    G+         
Sbjct: 127 HVAMLAEAEEWDEAIAVFREMQAR-GVPADGYTCARVLHACGRAGALREGRAVHAYALKL 185

Query: 262 ------------CGMMEE------AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
                        GM  E      A +V + M    VV WNA+V   +R+G  +DA  L 
Sbjct: 186 ALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELA 245

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            +M +   + NV TW+ V++G ++ G   EAL V   M   GL P+  T+ SLL   A+ 
Sbjct: 246 ARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANT 305

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA----- 418
           G L  G E HC+ ++  L        D+    AL+DMYAKC  +D A+ + DA+      
Sbjct: 306 GLLRHGMEIHCFFLRNQLE------PDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLT 359

Query: 419 -------------------------PKNR---DVATWTVMIGSYSQNGGANDALALFPQM 450
                                     KNR   D+ TW  +I  YS NG ++ A+ L  Q+
Sbjct: 360 TWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQI 419

Query: 451 ----------------------------------FQQDKLVKPNAFTLSCALMACARLAA 476
                                              Q+D  V+P+  T+S  L ACA LA 
Sbjct: 420 KAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDG-VQPSLVTMSVLLRACAGLAL 478

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
            + G+++H + LR  Y+  +  V+  LIDMYS+ G + +A+V+F++++Q+N+V   +++T
Sbjct: 479 QKKGKELHCFALRRAYDCDM-VVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLT 537

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
           G  +HG G +A   F  M   GL PD +TF  LL AC   G+V +G +YFDSM  ++G+ 
Sbjct: 538 GLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVK 597

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
              E+YAC+VDLL R   LDEA++ IE  P++P    W ALL GC IH N+ L E+AA  
Sbjct: 598 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 657

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           L  LE     +Y L+ N+Y     + +   ++  MK  GV  RPG SW+Q ++G   F V
Sbjct: 658 LFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEV 717

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
             + HP++ +IYE L  LV +IK  GYVP TS   ++V +EEK  LL  H+EKLA+ YG+
Sbjct: 718 DGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGL 777

Query: 777 L-TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + + A   P+R+ KN R+C DCH     IS + + +IILRD+ RFHHF +G C+C  YW
Sbjct: 778 IRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/696 (35%), Positives = 396/696 (56%), Gaps = 30/696 (4%)

Query: 141 VLKACGELPSSRCGSSVHAV-ICSSGFDSNVFVCNALMAMYARCDTLSYARQ-LFDEMFQ 198
           +L +C  L   R  + +HA+ I SS    +  + + L   YAR   L+ A   L      
Sbjct: 9   LLSSCAAL---RTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTS 65

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
           P    I +WN ++AA+++       L +F  +      + D  +   ALSACA LG  + 
Sbjct: 66  PS--SIPAWNALLAAHSRGASPHEALRVFRALPP--AARPDSTTFTLALSACARLGDLAT 121

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G+         +        D+   ++++  Y++ G+ +DA  +F +MR    K + VTW
Sbjct: 122 GEVV-----TDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMR----KRDRVTW 172

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           S ++ G+   G   +A++++ +M+  GLE + V +V ++  CA+ G   +G   H Y ++
Sbjct: 173 STMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLR 232

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             + +D      +++  +L+DMYAK    D AR +F+ + P   DV +W+ +I   +Q G
Sbjct: 233 HAMQMD------VVISTSLVDMYAKNGLFDQARRVFE-LMPHRNDV-SWSALISQLAQYG 284

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            A++AL LF  M  Q   + PN+  +  AL+AC+ L  L+ G+ IH ++LR     L   
Sbjct: 285 NADEALGLFRMM--QVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLE--LDRM 340

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V   +IDMYS+ G + +A+++FD +  R+++SW  ++   G HG G  A   F +M++  
Sbjct: 341 VGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNE 400

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + PD  TF  LL A SHSG+V++G  +F+ M  E+GI    +H  CIVDLL R+  ++EA
Sbjct: 401 VRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEA 460

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
             L+  +  +PT  I VALL+GC  +  +ELGE  A ++LEL+    G   L+SN+YA A
Sbjct: 461 NGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAA 520

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
             W  V  +R LMK  G KK PGCS ++ +    TF + D++HPQ ++I +++  L   +
Sbjct: 521 KNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEM 580

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           + MGY+P+T F  HD+++  K  LL  HSE+LA A+G+L T+PGT + + KNLR+CGDCH
Sbjct: 581 RKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCH 640

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            AI ++S I + EI++RD+ RFHHFK+G+C+C  YW
Sbjct: 641 DAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 253/506 (50%), Gaps = 43/506 (8%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLT---HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFS 99
           LL  C +L  +  +H  +IV +     H+  S L  AY      + A S L     SP S
Sbjct: 9   LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSPSS 68

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +  WNAL+    R   P  A R+F + +     PD  TF   L AC  L     G  V  
Sbjct: 69  IPAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGDLATGEVVTD 127

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               +G+ +++FVC++++ +YA+C  +  A ++FD M +    D V+W+T+V  +  +G 
Sbjct: 128 RASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKR---DRVTWSTMVTGFVNAGQ 184

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG--MMEEAKKVFERMKV 277
               + ++ RM  D  ++ D V +V  + ACA+ G    G      ++  A ++      
Sbjct: 185 PVQAIEMYMRMRRD-GLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQM------ 237

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            DVV   ++V  Y++ G F+ A  +F+ M       N V+WSA+I+  AQ G+  EAL +
Sbjct: 238 -DVVISTSLVDMYAKNGLFDQARRVFELMPHR----NDVSWSALISQLAQYGNADEALGL 292

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           FR MQ  GL PN   +V  L  C+ +G L LGK  H + I R L +      D MV  A+
Sbjct: 293 FRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGF-ILRTLEL------DRMVGTAV 345

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMY+KC S+  A+++FD +   +RD+ +W VMI     +G   DAL+LF +M + +  V
Sbjct: 346 IDMYSKCGSLSSAQMLFDKVV--SRDLISWNVMIACCGAHGRGRDALSLFQEMKRNE--V 401

Query: 458 KPNAFTLSCALMACARLAALRFGR-----QIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           +P+  T +  L A +    +  G+      ++ Y +    + L+     C++D+ +RSG 
Sbjct: 402 RPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLV-----CIVDLLARSGL 456

Query: 513 IDTARVVFDNLKQRNVVS-WTSLMTG 537
           ++ A  +  +L  +  +S   +L++G
Sbjct: 457 VEEANGLVASLHSKPTISILVALLSG 482


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 359/604 (59%), Gaps = 47/604 (7%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G+  +A++ F+ + VKD V+W  +++G +++G   D   L   + Q  V+ +V++W+++I
Sbjct: 156 GLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLL---LSQAPVR-DVISWTSLI 211

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A Y++     EA+  F+ M   G+ P+ VT++++LS CA +  L LG+  H      +L 
Sbjct: 212 AAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH------LLV 265

Query: 383 VDGSHPDDLMVINALIDMYAKCKS--------------------------------VDVA 410
            +   P    ++ ALIDMYAKC                                  VDVA
Sbjct: 266 EEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVA 325

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           R +FD +  + RD+ T+  M+  Y  +G   +AL LF  M + D  ++ + FT+   L A
Sbjct: 326 RSLFDEM--EVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD--LRVDNFTVVNLLTA 381

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           CA L AL+ GR +HA + +   E  I ++   L+DMY + G +D A +VF  + +R+V +
Sbjct: 382 CASLGALQQGRALHACIEQRLVEADI-YLGTALLDMYMKCGRVDEATIVFQRMGKRDVHT 440

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WT+++ G   +G+G  A   F QMR +G  P+ V+++ +L ACSHS ++++G  YFD M 
Sbjct: 441 WTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMR 500

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
             + I  + EHY C++DLLGR+  LDEA++L++ MP++P  +IW ++L+ CR+H +++L 
Sbjct: 501 ILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           + AA  LL+LE ++DG Y  L NIY ++ +W++ ++IR LM+   VKK  G S +     
Sbjct: 561 QCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQ 620

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F V D++HP+  +I  +L  +  R+K++GY P TS    DVD+EEK   L  HSEKL
Sbjct: 621 VHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKL 680

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           A+A+G++  AP  P+ I KNLR+C DCHSAI  IS + N EII+RD +RFHHF+EG+C+C
Sbjct: 681 AIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSC 740

Query: 831 KGYW 834
             +W
Sbjct: 741 NDFW 744


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/589 (39%), Positives = 344/589 (58%), Gaps = 21/589 (3%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A++AC        G+Q      A  V  R +   V     ++  Y R G+ +DA  +   
Sbjct: 47  AITACVERQALGEGRQV----HAHMVKARYR-PPVYLATRLIILYVRCGALDDARNVLDG 101

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + NV    V+W+A+I+GY+Q G   EAL++F +M   G + N  TL ++L+ C    +
Sbjct: 102 MPERNV----VSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQS 157

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           +   ++ H   +K       SH   + V ++L+DMY K  ++  AR +FD +    RD  
Sbjct: 158 IQQVEQVHSLVVKTNFE---SH---MFVGSSLLDMYGKSGNIQEARKVFDMLP--ERDTV 209

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           + T +I  Y+Q G  ++AL LF Q++     ++ N  T +  L + + LA+L +G+Q+H 
Sbjct: 210 SCTAIISGYAQLGLDDEALDLFRQLYSSG--MQCNYVTFTTLLTSLSGLASLNYGKQVHG 267

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            +LR +    I  + N LIDMYS+ G +  +R VFDN+ QR+ +SW +++ GYG HG+G 
Sbjct: 268 LILRKELPFFI-VLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQ 326

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +    F  M +E + PD VT L +L  CSH G+VD+GL  FD + KE        HY C+
Sbjct: 327 EVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCV 385

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           +DLLGR+ +L +A++LIE MP EPTP IW +LL  CR+H NV +GE+ A +LL++E    
Sbjct: 386 IDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNA 445

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y +LSNIYA AG WKDV R+R LM    V K P  SW+   +   TF   +R HP+ +
Sbjct: 446 GNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKK 505

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
            I   +  +   +KA G+VP  S  LHDVDDE+K  +L  HSEKLA+ +G++ T PG  I
Sbjct: 506 DINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTI 565

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++ KNLRIC DCH+   F+S +   EI LRD NRFH  K+G+CTC  YW
Sbjct: 566 QVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 195/433 (45%), Gaps = 77/433 (17%)

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           + +   + AC E  +   G  VHA +  + +   V++   L+ +Y RC  L  AR + D 
Sbjct: 42  HDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDG 101

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M +    ++VSW  +++ Y+QSG     L LF RM      + +  +L   L++C    +
Sbjct: 102 MPER---NVVSWTAMISGYSQSGRHAEALELFIRML-RAGCKANEFTLATVLTSCPVHQS 157

Query: 256 WSRGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAMVTG 289
             + +Q                           G ++EA+KVF+ +  +D VS  A+++G
Sbjct: 158 IQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISG 217

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+++G  ++A  LF+++    ++ N VT++                              
Sbjct: 218 YAQLGLDDEALDLFRQLYSSGMQCNYVTFT------------------------------ 247

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             TL++ LSG AS   L  GK+ H   +++ L      P  +++ N+LIDMY+KC  +  
Sbjct: 248 --TLLTSLSGLAS---LNYGKQVHGLILRKEL------PFFIVLQNSLIDMYSKCGKLLY 296

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +R +FD +    R   +W  M+  Y ++G   + + LF  M ++   VKP++ TL   L 
Sbjct: 297 SRRVFDNMP--QRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE---VKPDSVTLLAVLS 351

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNV 528
            C+    +  G  I   +++ Q  ++      C+ID+  RSG +  A  + +++  +   
Sbjct: 352 GCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTP 411

Query: 529 VSWTSLMTGYGMH 541
             W SL+    +H
Sbjct: 412 AIWGSLLGACRVH 424



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 160/330 (48%), Gaps = 41/330 (12%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP----SHLIAAYVSHNAPSPALSLLQRIS 94
           IT+ + RQ  +L +   +H  ++     + PP    + LI  YV   A   A ++L  + 
Sbjct: 48  ITACVERQ--ALGEGRQVHAHMV--KARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
               +V  W A+I    +      A  LF++M+R G   +E+T   VL +C    S +  
Sbjct: 104 ER--NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQV 161

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH+++  + F+S++FV ++L+ MY +   +  AR++FD + +    D VS   I++ Y
Sbjct: 162 EQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPER---DTVSCTAIISGY 218

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------- 261
           AQ G  +  L LF ++     +Q + V+    L++ + L + + GKQ             
Sbjct: 219 AQLGLDDEALDLFRQLYSS-GMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFF 277

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG +  +++VF+ M  +  +SWNAM+ GY R G  ++   LF+ M +
Sbjct: 278 IVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE 337

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           E VK + VT  AV++G +  G   E LD+F
Sbjct: 338 E-VKPDSVTLLAVLSGCSHGGLVDEGLDIF 366


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 276/745 (37%), Positives = 414/745 (55%), Gaps = 44/745 (5%)

Query: 104  NALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGEL----PSSRCGSSVH 158
            N L+   V+ +  + A ++F +M    G + D Y    +L A  E        R G  VH
Sbjct: 825  NGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVH 882

Query: 159  AVICSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            A +  +G + N V + N L+ MYA+   ++ A  +F+ M +    D VSWN++++   Q+
Sbjct: 883  AHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEK---DSVSWNSLISGLDQN 939

Query: 218  GDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFE 273
              +E     F RM  TG +       +L++ LS+CASLG    G+Q  C  ++       
Sbjct: 940  ECSEDAAESFLRMRRTGSMP---SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDT-- 994

Query: 274  RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGH 332
                 DV   NA++  Y+  G F +   +F  M +     + V+W++VI   +       
Sbjct: 995  -----DVSVSNALLALYAETGCFTECLKVFSLMPE----YDQVSWNSVIGALSDSEASVS 1045

Query: 333  EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
            +A+  F +M   G   + VT +++LS  +S+    +  + H   +K  LS      DD  
Sbjct: 1046 QAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLS------DDTA 1099

Query: 393  VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
            + NAL+  Y KC  ++    +F A   + RD  +W  MI  Y  N   + A+ L   M Q
Sbjct: 1100 IGNALLSCYGKCGEMNECEKIF-ARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQ 1158

Query: 453  QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
            + +  + ++FT +  L ACA +A L  G ++HA  +R   E  +  V + L+DMYS+ G 
Sbjct: 1159 KGQ--RLDSFTFATVLSACASVATLERGMEVHACGIRACMESDV-VVGSALVDMYSKCGR 1215

Query: 513  IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT-FLVLLY 571
            ID A   F+ +  RNV SW S+++GY  HG G+KA   F +M  +G  PD V   L +L 
Sbjct: 1216 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLS 1275

Query: 572  ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
            ACSH G V++G ++F SMS+ + +S R EH++C+VDLLGRA +LDE  + I  MPM+P  
Sbjct: 1276 ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNV 1335

Query: 632  IIWVALLNGC-RIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
            +IW  +L  C R +  N ELG  AA  LLELE +   +Y LL+N+YA+  +W+DVA+ R 
Sbjct: 1336 LIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARX 1395

Query: 690  LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
             MK   VKK  GCSWV  K+G   F  GD+ HP+   IY+ L  L ++++  GY+PQT +
Sbjct: 1396 AMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKY 1455

Query: 750  ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
            AL D++ E K +LL  HSEK+A+A+ +LT     PIRI KNLR+CGDCHSA  +IS I+ 
Sbjct: 1456 ALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVG 1514

Query: 810  HEIILRDSNRFHHFKEGSCTCKGYW 834
             +I+LRDSNRFHHF++G C+C  YW
Sbjct: 1515 RQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 154/585 (26%), Positives = 271/585 (46%), Gaps = 47/585 (8%)

Query: 73   LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
            LI  YV       A  L   +S    ++  W  LI    +   PD A   F  M+R G+ 
Sbjct: 585  LINIYVRIGDLGSAQKLFDEMSNR--NLVTWACLISGYTQNGKPDEACARFRDMVRAGFI 642

Query: 133  PDEYTFPFVLKACGELPSSRC--GSSVHAVICSSGFDSNVFVCNALMAMYARC-DTLSYA 189
            P+ Y F   L+AC E   S C  G  +H +I  + + S+V VCN L++MY  C D+ + A
Sbjct: 643  PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDA 702

Query: 190  RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
            R +FD +   GI + +SWN+I++ Y++ GD      LF+ M    + +G G S       
Sbjct: 703  RSVFDRI---GIRNSISWNSIISVYSRRGDXVSAYDLFSSM----QKEGLGFSFKPNEYT 755

Query: 250  CASLGTWSRGKQCGMMEEAKKVFERMK--------VKDVVSWNAMVTGYSRIGSFEDAFA 301
              SL T +    C  ++    V E+M         ++D+   +A+V+G++R G  +DA  
Sbjct: 756  FGSLITAA----CSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKN 811

Query: 302  LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGC 360
            +F++M       NVV+ + ++ G  ++  G  A  VF +M+   G+  N  + V LLS  
Sbjct: 812  IFEQMGVR----NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGI--NSDSYVVLLSAF 865

Query: 361  ASVGAL----LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
            +    L      G+E H + I+      G + + + + N L++MYAK  ++  A  +F+ 
Sbjct: 866  SEFSVLEEGRRKGREVHAHVIRT-----GLNDNKVAIGNGLVNMYAKSGAIADACSVFEL 920

Query: 417  IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
            +  K  D  +W  +I    QN  + DA   F +M +   +  P+ FTL   L +CA L  
Sbjct: 921  MVEK--DSVSWNSLISGLDQNECSEDAAESFLRMRRTGSM--PSNFTLISTLSSCASLGW 976

Query: 477  LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
            +  G QIH   L+   +  +  V+N L+ +Y+ +G       VF  + + + VSW S++ 
Sbjct: 977  IMLGEQIHCDGLKLGLDTDVS-VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIG 1035

Query: 537  GYG-MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
                      +A   F +M + G     VTF+ +L A S   + +   +   ++  ++ +
Sbjct: 1036 ALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ-IHALVLKYCL 1094

Query: 596  SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            S        ++   G+   ++E  ++   M      + W ++++G
Sbjct: 1095 SDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 1139



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 211/430 (49%), Gaps = 35/430 (8%)

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           GF  N+F+ N L+ +Y R   L  A++LFDEM      ++V+W  +++ Y Q+G  +   
Sbjct: 574 GFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNR---NLVTWACLISGYTQNGKPDEAC 630

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSW 283
             F  M     +  +  +  +AL AC   G       C +  +   +  + +   DVV  
Sbjct: 631 ARFRDMVRAGFIP-NHYAFGSALRACQESGP----SGCKLGVQIHGLISKTRYGSDVVVC 685

Query: 284 NAMVTGY-SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           N +++ Y S + S  DA ++F ++       N ++W+++I+ Y++RG    A D+F  MQ
Sbjct: 686 NVLISMYGSCLDSANDARSVFDRIGIR----NSISWNSIISVYSRRGDXVSAYDLFSSMQ 741

Query: 343 FCGL----EPNVVTLVSLLS-GCASVGALLLGKETHCYTIKRVLSVDGS-HPDDLMVINA 396
             GL    +PN  T  SL++  C+SV   L      C   + +  V+ S    DL V +A
Sbjct: 742 KEGLGFSFKPNEYTFGSLITAACSSVDFGL------CVLEQMLARVEKSGFLQDLYVGSA 795

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+  +A+    D A+ +F+ +  +N  V+   +M+G   Q  G   A  +F +M     L
Sbjct: 796 LVSGFARFGLTDDAKNIFEQMGVRNV-VSMNGLMVGLVKQKQG-EAAAKVFHEM---KDL 850

Query: 457 VKPNAFTLSCALMACARLAAL----RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           V  N+ +    L A +  + L    R GR++HA+V+R         + N L++MY++SG 
Sbjct: 851 VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGA 910

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           I  A  VF+ + +++ VSW SL++G   +   + A  +F +MR+ G  P   T +  L +
Sbjct: 911 IADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSS 970

Query: 573 CSHSGMVDQG 582
           C+  G +  G
Sbjct: 971 CASLGWIMLG 980



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 186/407 (45%), Gaps = 37/407 (9%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y RIG    A  LF +M   N+    VTW+ +I+GY Q G   EA   FR M  
Sbjct: 583 NTLINIYVRIGDLGSAQKLFDEMSNRNL----VTWACLISGYTQNGKPDEACARFRDMVR 638

Query: 344 CGLEPNVVTLVSLLSGCASVG--ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
            G  PN     S L  C   G     LG + H    K        +  D++V N LI MY
Sbjct: 639 AGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKT------RYGSDVVVCNVLISMY 692

Query: 402 AKC-KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL---V 457
             C  S + AR +FD I  +N    +W  +I  YS+ G    A  LF  M Q++ L    
Sbjct: 693 GSCLDSANDARSVFDRIGIRNS--ISWNSIISVYSRRGDXVSAYDLFSSM-QKEGLGFSF 749

Query: 458 KPNAFTLSCALMACARLAALRFG----RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
           KPN +T    + A    +++ FG     Q+ A V ++ +   + +V + L+  ++R G  
Sbjct: 750 KPNEYTFGSLITAAC--SSVDFGLCVLEQMLARVEKSGFLQDL-YVGSALVSGFARFGLT 806

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D A+ +F+ +  RNVVS   LM G      G+ A   F +M K+ +  +  +++VLL A 
Sbjct: 807 DDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAF 865

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACI----VDLLGRANRLDEAVELIEGMPMEP 629
           S   ++++G +    +      +   ++   I    V++  ++  + +A  + E M +E 
Sbjct: 866 SEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEK 924

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKD--GSYTLLSNI 674
             + W +L++G   +   E  E AA   L +        ++TL+S +
Sbjct: 925 DSVSWNSLISGLDQN---ECSEDAAESFLRMRRTGSMPSNFTLISTL 968


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/689 (36%), Positives = 382/689 (55%), Gaps = 28/689 (4%)

Query: 150 SSRCGSSVHAVICSSGFDSNV--FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           SS  G +VHA I  +  D+ +  F+CN L+ MY++ D L  + QL   +  P    +V+W
Sbjct: 22  SSLLGRAVHAHILRT-HDTPLPSFLCNHLVNMYSKLD-LPNSAQLVLSLTNPRT--VVTW 77

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
            ++++    +      L+ F+ M  +  +  D  +      A ASL     GKQ   +  
Sbjct: 78  TSLISGCVHNRRFTSALLHFSNMRRECVLPND-FTFPCVFKASASLHMPVTGKQLHAL-- 134

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
                +   + DV    +    YS+ G   +A  +F +M   N+     TW+A ++   Q
Sbjct: 135 ---ALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNL----ATWNAYMSNAVQ 187

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G   +A+  F++      EPN +T  + L+ CA + +L LG++ H + ++        +
Sbjct: 188 DGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVR------SRY 241

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
            +D+ V N LID Y KC  +  + ++F  I    R+V +W  ++ +  QN     A  +F
Sbjct: 242 REDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVF 301

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
               Q  K V+P  F +S  L ACA L  L  GR +HA  L+   E  I FV + L+D+Y
Sbjct: 302 ---LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENI-FVGSALVDLY 357

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE--GLAPDGVT 565
            + G I+ A  VF  + +RN+V+W +++ GY   G  D A   F +M     G+A   VT
Sbjct: 358 GKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVT 417

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
            + +L ACS +G V++GL+ F+SM   +GI   AEHYAC+VDLLGR+  +D A E I+ M
Sbjct: 418 LVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRM 477

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           P+ PT  +W ALL  C++H   +LG++AA +L EL+ +  G++ + SN+ A+AGRW++  
Sbjct: 478 PILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEAT 537

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
            +R  M+  G+KK  G SWV  K     F   D  H ++ +I  +LA L   +K  GYVP
Sbjct: 538 IVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVP 597

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
             + +L D+++EEK   ++ HSEK+ALA+G++T   G PIRITKNLRIC DCHSAI FIS
Sbjct: 598 DANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFIS 657

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I+  EII+RD+NRFH FK+G C+CK YW
Sbjct: 658 KIVGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 231/494 (46%), Gaps = 32/494 (6%)

Query: 56  IHQQIIVQNLTHVPP---SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR 112
           +H  I+  + T +P    +HL+  Y   + P+ A  +L   +P   +V  W +LI   V 
Sbjct: 29  VHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPR--TVVTWTSLISGCVH 86

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
            R   +A   F  M R    P+++TFP V KA   L     G  +HA+    G   +VFV
Sbjct: 87  NRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFV 146

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
             +   MY++      AR +FDEM      ++ +WN  ++   Q G     +  F +   
Sbjct: 147 GCSAFDMYSKTGLRPEARNMFDEMPHR---NLATWNAYMSNAVQDGRCLDAIAAFKKFLC 203

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            V  + + ++    L+ACA + +   G+Q  G +     V  R + +DV  +N ++  Y 
Sbjct: 204 -VDGEPNAITFCAFLNACADIVSLELGRQLHGFI-----VRSRYR-EDVSVFNGLIDFYG 256

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           + G    +  +F ++     + NVV+W +++A   Q      A  VF Q +   +EP   
Sbjct: 257 KCGDIVSSELVFSRIGSG--RRNVVSWCSLLAALVQNHEEERACMVFLQARK-EVEPTDF 313

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
            + S+LS CA +G L LG+  H   +K  +       +++ V +AL+D+Y KC S++ A 
Sbjct: 314 MISSVLSACAELGGLELGRSVHALALKACVE------ENIFVGSALVDLYGKCGSIEYAE 367

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F  +  +N  + TW  MIG Y+  G  + AL+LF +M      +  +  TL   L AC
Sbjct: 368 QVFREMPERN--LVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSAC 425

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           +R  A+  G QI    +R +Y  + P   +  C++D+  RSG +D A      +     +
Sbjct: 426 SRAGAVERGLQIFES-MRGRYG-IEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTI 483

Query: 530 S-WTSLMTGYGMHG 542
           S W +L+    MHG
Sbjct: 484 SVWGALLGACKMHG 497



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 126/267 (47%), Gaps = 24/267 (8%)

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGEL 148
           +  RI     +V  W +L+   V+    + A  +FLQ  R+   P ++    VL AC EL
Sbjct: 267 VFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAEL 325

Query: 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN 208
                G SVHA+   +  + N+FV +AL+ +Y +C ++ YA Q+F EM +    ++V+WN
Sbjct: 326 GGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPER---NLVTWN 382

Query: 209 TIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
            ++  YA  GD +  L LF  MT G   +    V+LV+ LSAC+  G   RG Q      
Sbjct: 383 AMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQ------ 436

Query: 268 AKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
              +FE M+ +  +      +  +V    R G  + A+   K+M    +   +  W A++
Sbjct: 437 ---IFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRM---PILPTISVWGALL 490

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPN 349
              A + HG   L      +   L+P+
Sbjct: 491 G--ACKMHGKTKLGKIAAEKLFELDPD 515


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 328/551 (59%), Gaps = 16/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N+++  Y + G+  DA  +F  +   +V    V+W+ +I GYAQ     EAL +   M  
Sbjct: 101 NSLIHMYCKCGAVSDARHVFDGIPTRDV----VSWTYLITGYAQNDMPAEALGLLPDMLR 156

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
               P+  T  S L    + G   +G++ H   +K  L       +D+ V +AL+DMYA+
Sbjct: 157 ARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLD------EDVYVGSALLDMYAR 210

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C+ +D+A  +FD +  KN    +W  +I  +++ G     L  F +M  Q        FT
Sbjct: 211 CQQMDMAIRVFDWLDSKNE--VSWNALIAGFARKGDGETTLMKFAEM--QRNGFGATHFT 266

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            S    A AR+ AL  GR +HA+++++  + L  FVAN ++ MY++SG +  AR VFD +
Sbjct: 267 YSSVFSALARIGALEQGRWVHAHMIKSG-QKLTAFVANTILGMYAKSGSMVDARKVFDRV 325

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            QR++V+W +++T +  +GLG +A   F+++RK G+  + +TFL +L ACSH G+V +G 
Sbjct: 326 DQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGK 385

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YFD M K++ +    +HY   VDLLGRA  L EA+  +  MPMEPT  +W ALL  CR+
Sbjct: 386 QYFDMM-KDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRM 444

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N ++G+ AA+ + EL+ E  G   LL NIYA+ G+W D AR+R +MK TGVKK P CS
Sbjct: 445 HKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACS 504

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           WV+ +     F   D THP+S++IY +   +  RIK  GYVP T + L  + ++E+   L
Sbjct: 505 WVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKL 564

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEK+ALA+ ++    G  IRI KN+RICGDCHSA  ++S +   EI++RD+NRFHHF
Sbjct: 565 QYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHF 624

Query: 824 KEGSCTCKGYW 834
             GSC+C  YW
Sbjct: 625 SNGSCSCGDYW 635



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 155/349 (44%), Gaps = 34/349 (9%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           Q K+L     IH  +    L       + LI  Y    A S A  +   I      V  W
Sbjct: 74  QSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR--DVVSW 131

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
             LI    +  +P  A  L   M+R  + P  +TF   LKA G       G  +HA+   
Sbjct: 132 TYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVK 191

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
              D +V+V +AL+ MYARC  +  A ++FD +      + VSWN ++A +A+ GD E  
Sbjct: 192 YNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSK---NEVSWNALIAGFARKGDGETT 248

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK----------------------- 260
           LM FA M  +        +  +  SA A +G   +G+                       
Sbjct: 249 LMKFAEMQRN-GFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILG 307

Query: 261 ---QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
              + G M +A+KVF+R+  +D+V+WN M+T +++ G  ++A A F+++R+  ++LN +T
Sbjct: 308 MYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQIT 367

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
           + +V+   +  G   E    F  M+   +EP +   VS +      G L
Sbjct: 368 FLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLL 416



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 11/237 (4%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P      S+++ CA    L   +  H +  +  L+ DG       ++N+LI MY KC 
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDG------FLLNSLIHMYCKCG 111

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           +V  AR +FD I    RDV +WT +I  Y+QN    +AL L P M +     +P+ FT +
Sbjct: 112 AVSDARHVFDGI--PTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRAR--FRPSGFTFT 167

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L A         G Q+HA  ++   +  + +V + L+DMY+R   +D A  VFD L  
Sbjct: 168 SFLKAAGACGGRGIGEQMHALAVKYNLDEDV-YVGSALLDMYARCQQMDMAIRVFDWLDS 226

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +N VSW +L+ G+   G G+     F +M++ G      T+  +  A +  G ++QG
Sbjct: 227 KNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 192/470 (40%), Gaps = 87/470 (18%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P    +  ++ AC +  +     ++H+ +  S    + F+ N+L+ MY +C  +S AR +
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHV 119

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FD +      D+VSW  ++  YAQ+      L L   M    + +  G +  + L A  +
Sbjct: 120 FDGI---PTRDVVSWTYLITGYAQNDMPAEALGLLPDML-RARFRPSGFTFTSFLKAAGA 175

Query: 253 LGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
            G    G+Q                          C  M+ A +VF+ +  K+ VSWNA+
Sbjct: 176 CGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNAL 235

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G++R G  E     F +M++        T+S+V                         
Sbjct: 236 IAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSV------------------------- 270

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
                      S  A +GAL  G+  H + IK    +         V N ++ MYAK  S
Sbjct: 271 ----------FSALARIGALEQGRWVHAHMIKSGQKLTA------FVANTILGMYAKSGS 314

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  AR +FD +    RD+ TW  M+ +++Q G   +A+A F ++ +    ++ N  T   
Sbjct: 315 MVDARKVFDRV--DQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYG--IQLNQITFLS 370

Query: 467 ALMACARLAALRFGRQ----IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFD 521
            L AC+    ++ G+Q    +  Y +  + +  + FV     D+  R+G +  A + VF 
Sbjct: 371 VLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFV-----DLLGRAGLLKEALIFVFK 425

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
              +     W +L+    MH       +A D + +  L P+     VLLY
Sbjct: 426 MPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFE--LDPEDTGPPVLLY 473



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 21/248 (8%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P        + ACA+   L   R IH+++ R++      F+ N LI MY + G +  AR 
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAG-DGFLLNSLIHMYCKCGAVSDARH 118

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY---ACSH 575
           VFD +  R+VVSWT L+TGY  + +  +A      M +    P G TF   L    AC  
Sbjct: 119 VFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGG 178

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+ +Q      +++ ++ +       + ++D+  R  ++D A+ + + +  +   + W 
Sbjct: 179 RGIGEQ----MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSK-NEVSWN 233

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGS--------YTLLSNIYA-NAGRWKDVAR 686
           AL+ G    A    GE    +  E++    G+        ++ L+ I A   GRW     
Sbjct: 234 ALIAG---FARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHM 290

Query: 687 IRSLMKHT 694
           I+S  K T
Sbjct: 291 IKSGQKLT 298


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 398/736 (54%), Gaps = 28/736 (3%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F  N +IR      LP +A   +  M+  G  PD +TFP VLK C    +   G + HA 
Sbjct: 86  FLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAA 145

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   G  ++V+  N+L+A+YA+   +  A ++FD M  P   DIVSWNT+V  Y  +G  
Sbjct: 146 VIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGM--PAR-DIVSWNTMVDGYVSNGMG 202

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L  F  M   ++V  D V ++ AL+AC      + G+     E           +DV
Sbjct: 203 ALALACFREMNDALQVGHDSVGVIAALAACCLESALALGR-----EIHGYAIRHGLEQDV 257

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               ++V  Y + G+   A  +F KM    V    VTW+ +I GYA      +A D F Q
Sbjct: 258 KVGTSLVDMYCKCGNVFFAENVFAKMPLRTV----VTWNCMIGGYALNERPVDAFDCFMQ 313

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G +  VVT ++LL+ CA   + L G+  H Y ++R           +++  AL++M
Sbjct: 314 MRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFL------PHVVLETALLEM 367

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y K   V+ +  +F  I  K   + +W  MI +Y       +A+ALF ++  Q   + P+
Sbjct: 368 YGKVGKVESSEKIFGQITDKT--LVSWNNMIAAYMYMEMYQEAIALFLELLNQP--LYPD 423

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            FT++  + A   L ++R  +Q+H+Y+++  Y      + N ++ MY+R G+I  +R +F
Sbjct: 424 YFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDST-LIMNAVMHMYARCGNIVASREIF 482

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D +  ++V+SW +++ GY +HG G  A   FD+M+  G+ P+  TF+ +L ACS SG+  
Sbjct: 483 DKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEA 542

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G K F+SM +E+G+  + EHY C+ DLLGRA  L E +  IE MP+ PT  IW +LL  
Sbjct: 543 EGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTA 602

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            R   ++++ E AA R+ +LE    G Y +LS++YA+AGRW+DV RIRSLMK  G+++  
Sbjct: 603 SRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTE 662

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
             S V+      +F  GD +HPQS+KI+E    L + I   G    +S  L D D     
Sbjct: 663 ARSLVELNNKECSFVNGDMSHPQSEKIHEFSDILSRNI---GEDLDSSSNLRDSDPFASS 719

Query: 761 DLLF--EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
             +   +HS +LA+A+G++++  G+P+ + KN+R+C  CH A+  IS     +I++ D+ 
Sbjct: 720 TTVLPNKHSVRLAVAFGLISSEAGSPVLVKKNVRVCNHCHHALKLISKYSGRKIVVGDTK 779

Query: 819 RFHHFKEGSCTCKGYW 834
            +H F +GSC C  YW
Sbjct: 780 IYHIFSDGSCCCGDYW 795


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/523 (42%), Positives = 328/523 (62%), Gaps = 10/523 (1%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N V  +A+ +GY +    + +L++FR M        V    +L++  AS      G    
Sbjct: 159 NPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTAS 218

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMI 431
            + +   +  +     +  V+N ++D YAK   + ++VAR +FD +    RDV +W  MI
Sbjct: 219 LHALIAKIGFE----RNAGVVNTMLDSYAKGGSRDLEVARKVFDTM---ERDVVSWNSMI 271

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QNG + +A+ L+ +M      +K NA  LS  L+ACA   A++ G++IH  V+R  
Sbjct: 272 ALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMG 331

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            E  + +V   ++DMYS+ G ++ A   F  +K++N++SW++++TGYGMHG G +A   F
Sbjct: 332 LEENV-YVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF 390

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M++ GL P+ +TF+ +L ACSH+G++D+G  ++++M +EFGI A  EHY C+VDLLGR
Sbjct: 391 TEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGR 450

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  LDEA  LI+ M ++P   IW ALL+ CRIH NVEL E++  RL EL++   G Y LL
Sbjct: 451 AGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLL 510

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNIYA A  WKDV RIR L+K   ++K PG S  + K     F+VGD++HPQ  +IY  L
Sbjct: 511 SNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYL 570

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L++R++  GYVP T   LHD+D+EEK   L  HSEKLA+A+ ++ + P + I I KNL
Sbjct: 571 EKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNL 630

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCH+A+ FI+ I   EII+RD  RFHHFK+G C+C+ YW
Sbjct: 631 RVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 123/249 (49%), Gaps = 38/249 (15%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQ 191
           DE        A   +P     +S+HA+I   GF+ N  V N ++  YA+  +  L  AR+
Sbjct: 196 DEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARK 255

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT---GDVKVQGDGVSLVNALS 248
           +FD M +    D+VSWN+++A YAQ+G +   + L+++M    G +K   + V+L   L 
Sbjct: 256 VFDTMER----DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKC--NAVALSAVLL 309

Query: 249 ACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVS 282
           ACA  G    GK                          +CG +E A + F ++K K+++S
Sbjct: 310 ACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILS 369

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM- 341
           W+AM+TGY   G  ++A  +F +M++  ++ N +T+ +V+A  +  G   E    +  M 
Sbjct: 370 WSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMK 429

Query: 342 QFCGLEPNV 350
           Q  G+E  V
Sbjct: 430 QEFGIEAGV 438



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 108/232 (46%), Gaps = 23/232 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMR--RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           V  WN++I    +  +   A  L+ +M+    G   +      VL AC    + + G  +
Sbjct: 264 VVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRI 323

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   G + NV+V  +++ MY++C  +  A + F ++ +    +I+SW+ ++  Y   
Sbjct: 324 HNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK---NILSWSAMITGYGMH 380

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +  L +F  M     ++ + ++ ++ L+AC+           G+++E +  +  MK 
Sbjct: 381 GRGQEALEIFTEMKRS-GLRPNYITFISVLAACS---------HAGLLDEGRYWYNAMKQ 430

Query: 278 K-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +      V  +  MV    R G  ++A++L K+M+   VK +   W A+++ 
Sbjct: 431 EFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMK---VKPDAAIWGALLSA 479


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 281/811 (34%), Positives = 422/811 (52%), Gaps = 58/811 (7%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPS-----HLIAAYVSHNAPSPALSLLQRISPSPF 98
           LR C +      +H  I+     H  PS      L+AAY        A  LL  +  +  
Sbjct: 24  LRSCSAPRHAAAVHAHIV---RAHPSPSLFLRNTLLAAYC--RLGGHARRLLDEMPRTNA 78

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSV 157
             F  N LI    R   P+ +   F +  R  G   D +T+   L AC      R G +V
Sbjct: 79  VSF--NLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAV 136

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA+    G    VFV N+L++MYARC  +  ARQ+FD   +    D VSWN +V+ Y ++
Sbjct: 137 HALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADER---DDVSWNALVSGYVRA 193

Query: 218 GDAEGGLMLFARMTGDVKVQGDGV---SLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           G  +  L +FA M    +  G G+   +L + +  CA       G    +M+ A  V   
Sbjct: 194 GAQDDMLRVFAMM----RRSGIGLNSFALGSVIKCCA-------GSDDPVMDIAAAVHGC 242

Query: 275 MKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           + VK     DV   +AMV  Y++ G+  +A ALFK +    +  NVV ++A+IAG  +  
Sbjct: 243 V-VKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSV----LDPNVVVFNAMIAGLCRDE 297

Query: 330 HG------HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
                    EAL ++ ++Q  G+EP   T  S++  C   G +  GK+ H   +K     
Sbjct: 298 AAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQG 357

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
           D        + +ALID+Y     ++     F ++ PK +DV TWT MI    QN     A
Sbjct: 358 DD------FIGSALIDLYLNSGCMEDGFRCFTSV-PK-QDVVTWTAMISGCVQNELFERA 409

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L LF ++      +KP+ FT+S  + ACA LA  R G QI  +  ++ +        +C 
Sbjct: 410 LTLFHELLGAG--LKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSC- 466

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           I MY+RSGD+  A   F  ++  ++VSW+++++ +  HG    A   F++M    + P+ 
Sbjct: 467 IHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNE 526

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +TFL +L ACSH G+VD+GLKY+++M +E+ +S   +H  C+VDLLGRA RL +A   I 
Sbjct: 527 ITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIR 586

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
                  P+IW +LL  CRIH ++E G+L A+R++EL+     SY  L NIY +AG    
Sbjct: 587 DSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSL 646

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
            ++IR +MK  GVKK PG SW++ + G  +F  GD++HP+S  IY  LA ++ +I  +  
Sbjct: 647 ASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKLTA 706

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
              +S    D    E+  + + HSEKLA+A G++      PIR+ KNLR+C DCH  +  
Sbjct: 707 TDASSTKSDDTIRNEQSWMNW-HSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKL 765

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS     EI+LRD+ RFHHF++GSC+C  YW
Sbjct: 766 ISKSEKREIVLRDAIRFHHFRDGSCSCADYW 796


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/739 (35%), Positives = 405/739 (54%), Gaps = 36/739 (4%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSV 157
           +  W A+     R      +  L  +M+  G  P+ YT   V  AC   EL     G  +
Sbjct: 116 IVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVL 175

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
             V     + +++ V +AL+ M AR   L+ AR++FD + +     +V W  +++ Y Q 
Sbjct: 176 GLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEK---TVVVWTLLISRYVQG 232

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK- 276
             AE  + +F     D   + D  ++ + +SAC  LG+   G Q         +  RM  
Sbjct: 233 ECAEEAVEIFLDFLED-GFEPDRYTMSSMISACTELGSVRLGLQL------HSLALRMGF 285

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG-HGHEAL 335
             D      +V  Y++  + E A     K+ +   K +V++W+A+I+GY Q G   ++ +
Sbjct: 286 ASDACVSCGLVDMYAK-SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVM 344

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +F +M    ++PN +T  S+L  CA++     G++ H + IK   +   +H     V N
Sbjct: 345 VLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKS--NQAAAHT----VGN 398

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           AL+ MYA+   ++ AR +F+ +  ++        MI   ++   A     L  ++ + D 
Sbjct: 399 ALVSMYAESGCMEEARRVFNQLYERS--------MISCITEGRDA----PLDHRIGRMDM 446

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            +  + F  +  + A A +  L  G+Q+HA  L+  +     FV+N L+ MYSR G ++ 
Sbjct: 447 GISSSTF--ASLISAAASVGMLTKGQQLHAMTLKAGFGS-DRFVSNSLVSMYSRCGYLED 503

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A   F+ LK RNV+SWTS+++G   HG  ++A   F  M   G+ P+ VT++ +L ACSH
Sbjct: 504 ACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSH 563

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+V +G +YF SM ++ G+  R EHYAC+VDLL R+  + EA+E I  MP++   ++W 
Sbjct: 564 VGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWK 623

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            LL  CR H N+E+GE+AA  ++ELE      Y LLSN+YA+AG W +VARIRS M+   
Sbjct: 624 TLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNN 683

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           + K  G SW++ +  T  F  GD +HP++Q IY  L  LV  IK MGYVP TS  LHD+ 
Sbjct: 684 LNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMS 743

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           DE K   L +HSEK+A+A+G++TT+   PIRI KNLR+C DCHSAI ++S     EIILR
Sbjct: 744 DELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILR 803

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           DSNRFH  K+G C+C  YW
Sbjct: 804 DSNRFHRMKDGECSCGEYW 822



 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 238/526 (45%), Gaps = 65/526 (12%)

Query: 152 RCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
           R G ++H  +      D +  V N+L+ +Y+RC  ++ AR +FD M   G+ DIVSW  +
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGM--RGLRDIVSWTAM 122

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA-SLGTWSRGKQCGMMEEAK 269
            +  A++G     L+L   M        +   L NA + CA +   +     C +     
Sbjct: 123 ASCLARNGAERESLLLIGEML-------ESGLLPNAYTLCAVAHACFPHELYCLVGGVVL 175

Query: 270 KVFERMKV--KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
            +  +M +   D+   +A++   +R G    A  +F  +    ++  VV W+ +I+ Y Q
Sbjct: 176 GLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGL----IEKTVVVWTLLISRYVQ 231

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                EA+++F      G EP+  T+ S++S C  +G++ LG + H   ++   + D   
Sbjct: 232 GECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDAC- 290

Query: 388 PDDLMVINALIDMYAKC---KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GANDA 443
                V   L+DMYAK    +++D A  +F+ +  +  DV +WT +I  Y Q+G   N  
Sbjct: 291 -----VSCGLVDMYAKSNIEQAMDYANKVFERM--RKNDVISWTALISGYVQSGVQENKV 343

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           + LF +M  +   +KPN  T S  L ACA ++    GRQ+HA+V+++  +     V N L
Sbjct: 344 MVLFGEMLNES--IKPNHITYSSILKACANISDHDSGRQVHAHVIKSN-QAAAHTVGNAL 400

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVS-------------------------WTSLMTGY 538
           + MY+ SG ++ AR VF+ L +R+++S                         + SL++  
Sbjct: 401 VSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAA 460

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
              G+  K         K G   D      L+   S  G ++   + F+ +     IS  
Sbjct: 461 ASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVIS-- 518

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPM---EPTPIIWVALLNGC 641
              +  ++  L +    + A+ L   M +   +P  + ++A+L+ C
Sbjct: 519 ---WTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSAC 561



 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 142/514 (27%), Positives = 247/514 (48%), Gaps = 56/514 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  LI R V+    + A  +FL  +  G+ PD YT   ++ AC EL S R G  +H
Sbjct: 218 TVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLH 277

Query: 159 AVICSSGFDSNVFVCNALMAMYARCD---TLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           ++    GF S+  V   L+ MYA+ +    + YA ++F+ M +    D++SW  +++ Y 
Sbjct: 278 SLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKN---DVISWTALISGYV 334

Query: 216 QSGDAEGGLM-LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           QSG  E  +M LF  M  +  ++ + ++  + L ACA++     G+Q         V + 
Sbjct: 335 QSGVQENKVMVLFGEMLNE-SIKPNHITYSSILKACANISDHDSGRQV-----HAHVIKS 388

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            +       NA+V+ Y+  G  E+A  +F ++ + ++ ++ +T             G +A
Sbjct: 389 NQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSM-ISCIT------------EGRDA 435

Query: 335 -LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
            LD        G+  +  T  SL+S  ASVG L  G++ H  T+K           D  V
Sbjct: 436 PLDHRIGRMDMGISSS--TFASLISAAASVGMLTKGQQLHAMTLK------AGFGSDRFV 487

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            N+L+ MY++C  ++ A   F+ +  K+R+V +WT MI   +++G A  AL+LF  M   
Sbjct: 488 SNSLVSMYSRCGYLEDACRSFNEL--KDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSG 511
              VKPN  T    L AC+ +  +R G++    + R+    LIP + +  C++D+ +RSG
Sbjct: 546 G--VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDH--GLIPRMEHYACMVDLLARSG 601

Query: 512 DIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFL 567
            +  A    + +  + + + W +L+     H    +G+ A  A + +  E   P     L
Sbjct: 602 LVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIA--AKNVIELEPRDPAPYVLL 659

Query: 568 VLLYACSHSGMVDQGLKYFDSM-----SKEFGIS 596
             LYA   +G+ D+  +   +M     +KE G+S
Sbjct: 660 SNLYA--DAGLWDEVARIRSAMRDNNLNKETGLS 691



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 28/288 (9%)

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
           G L LG+  H    +R+L  D     D +V N+L+ +Y++C +V  AR +FD +    RD
Sbjct: 62  GDLRLGRALH----RRLLRGD-LLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGL-RD 115

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           + +WT M    ++NG   ++L L  +M +   L  PNA+TL     AC       F  ++
Sbjct: 116 IVSWTAMASCLARNGAERESLLLIGEMLESGLL--PNAYTLCAVAHAC-------FPHEL 166

Query: 484 HAYVLRNQYEMLIPF--------VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +  V      ++           V + LIDM +R+GD+ +AR VFD L ++ VV WT L+
Sbjct: 167 YCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLI 226

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           + Y      ++A   F    ++G  PD  T   ++ AC+  G V  GL+   S++   G 
Sbjct: 227 SRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGF 285

Query: 596 SARAEHYACIVDLLGRAN---RLDEAVELIEGMPMEPTPIIWVALLNG 640
           ++ A     +VD+  ++N    +D A ++ E M      I W AL++G
Sbjct: 286 ASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDV-ISWTALISG 332


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/651 (36%), Positives = 365/651 (56%), Gaps = 24/651 (3%)

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           DT+ YA  +F+ + +P   +  ++N ++   A     +  L+LF +M  +  VQ D  + 
Sbjct: 69  DTIDYALSIFNHIDKP---ESSAYNVMIRGLAFKRSPDNALLLFKKM-HEKSVQHDKFTF 124

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
            + L AC+ +     G+Q      A  +    K  + V  N ++  Y+  G    A  +F
Sbjct: 125 SSVLKACSRMKALREGEQV----HALILKSGFKSNEFVE-NTLIQMYANCGQIGVARHVF 179

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
             M + ++    V W+++++GY + G   E + +FR++    +E + VT++S+L  C  +
Sbjct: 180 DGMPERSI----VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRL 235

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
             L +G+    Y + + L  + +      +  +LIDMYAKC  VD AR +FD +    RD
Sbjct: 236 ANLEIGELIGEYIVSKGLRRNNT------LTTSLIDMYAKCGQVDTARKLFDEM--DKRD 287

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           V  W+ MI  Y+Q     +AL LF +M  Q   V PN  T+   L +CA L A   G+ +
Sbjct: 288 VVAWSAMISGYAQADRCKEALNLFHEM--QKGNVYPNEVTMVSVLYSCAMLGAYETGKWV 345

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H Y+ + + ++ +  +   LID Y++ G ID +  VF  +  +NV +WT+L+ G   +G 
Sbjct: 346 HFYIKKKKMKLTVT-LGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGE 404

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G  A   F  M +  + P+ VTF+ +L ACSH+ +VDQG   F+SM ++F I  R EHY 
Sbjct: 405 GKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYG 464

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C+VD+LGRA  L+EA + I+ MP  P  ++W  LL  CR H N+E+ E +   +  LE  
Sbjct: 465 CMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPA 524

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
             G Y LLSN YA  GR +D  R+RSL+K   +KK PGCS ++       FF  D  H  
Sbjct: 525 HSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKH 584

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGT 783
           S++I++ L  ++++IK +GYVP T  A  + ++E K   +  HSEKLA+AYG++ T+P T
Sbjct: 585 SKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRT 644

Query: 784 PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IRI+KNLR+C DCH+A  FIS +    II+RD NRFHHFK+G C+C  YW
Sbjct: 645 TIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 169/592 (28%), Positives = 277/592 (46%), Gaps = 86/592 (14%)

Query: 25  NIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQN--LTHVPPSHLI--AAYVSH 80
           NI L S+T  P     SL+L+QCK+   +  +H  ++     L  +    ++  AA +  
Sbjct: 10  NISLTSITQFP-ENPKSLILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLP 68

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
           +    ALS+   I     S +  N +IR     R PDNA  LF +M  +    D++TF  
Sbjct: 69  DTIDYALSIFNHIDKPESSAY--NVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSS 126

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           VLKAC  + + R G  VHA+I  SGF SN FV N L+ MYA C  +  AR +FD M +  
Sbjct: 127 VLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERS 186

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
              IV+WN++++ Y ++G  +  + LF ++  +++++ D V++++ L AC  L     G+
Sbjct: 187 ---IVAWNSMLSGYTKNGLWDEVVKLFRKIL-ELRIEFDDVTMISVLMACGRLANLEIGE 242

Query: 261 --------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     +CG ++ A+K+F+ M  +DVV+W+AM++GY++  
Sbjct: 243 LIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQAD 302

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             ++A  LF +M++ NV                                    PN VT+V
Sbjct: 303 RCKEALNLFHEMQKGNVY-----------------------------------PNEVTMV 327

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L  CA +GA   GK  H Y  K+ + +       + +   LID YAKC  +D +  +F
Sbjct: 328 SVLYSCAMLGAYETGKWVHFYIKKKKMKL------TVTLGTQLIDFYAKCGYIDRSVEVF 381

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             ++ KN  V TWT +I   + NG    AL  F  M + D  VKPN  T    L AC+  
Sbjct: 382 KEMSFKN--VFTWTALIQGLANNGEGKMALEFFSSMLEND--VKPNDVTFIGVLSACSHA 437

Query: 475 AALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWT 532
             +  GR +   + R+   E  I     C++D+  R+G ++ A    DN+    N V W 
Sbjct: 438 CLVDQGRHLFNSMRRDFDIEPRIEHYG-CMVDILGRAGFLEEAYQFIDNMPFPPNAVVWR 496

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +L+     H   + A  + + + +   A  G  +++L    +  G V+  ++
Sbjct: 497 TLLASCRAHKNIEMAEKSLEHITRLEPAHSG-DYILLSNTYALVGRVEDAIR 547



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 45/334 (13%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W+A+I    +      A  LF +M +   +P+E T   VL +C  L +   G  VH 
Sbjct: 288 VVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF 347

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            I        V +   L+  YA+C  +  + ++F EM      ++ +W  ++   A +G+
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEM---SFKNVFTWTALIQGLANNGE 404

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F+ M  +  V+ + V+ +  LSAC+            ++++ + +F  M+ +D
Sbjct: 405 GKMALEFFSSMLEN-DVKPNDVTFIGVLSACS---------HACLVDQGRHLFNSMR-RD 453

Query: 280 ------VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                 +  +  MV    R G  E+A+     M       N V W  ++A  + R H + 
Sbjct: 454 FDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM---PFPPNAVVWRTLLA--SCRAHKNI 508

Query: 334 ALDVFRQMQFCGLEP----------NVVTLVSLLSGCASVGALLLGKETH----CYTIK- 378
            +          LEP          N   LV  +     V +L+  KE      C  I+ 
Sbjct: 509 EMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIEL 568

Query: 379 -----RVLSVDGSHPDDLMVINALIDMYAKCKSV 407
                   S DG H     + +AL  M  + K +
Sbjct: 569 DGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRL 602


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/688 (35%), Positives = 370/688 (53%), Gaps = 72/688 (10%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA I  +G  ++  +   L++ YA     + A  + D + +P   ++ S++T++ A+++ 
Sbjct: 36  HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEP---NVFSFSTLIYAFSKF 92

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
                 L  F++M     +  D   L +A+ ACA L      +Q                
Sbjct: 93  HQFHHALSTFSQMLTR-GLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFV 151

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                     C  + +A +VF+RM   DVVSW+A+V  Y+R G  ++A  LF +M    V
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGV 211

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           + N+++W+ +IAG+   G   EA+ +F  M   G EP+  T+ S+L     +  L++G  
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------- 421
            H Y IK+ L  D        V +ALIDMY KC        +FD +   +          
Sbjct: 272 IHGYVIKQGLVSDKC------VSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFG 325

Query: 422 -----------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
                                   +V +WT MI   SQNG   +AL LF +M  Q   VK
Sbjct: 326 LSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM--QIAGVK 383

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN+ T+ C L AC  +AAL  G+  H + LR      + +V + LIDMY++ G I  +R+
Sbjct: 384 PNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDV-YVGSALIDMYAKCGRIQASRI 442

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            FD +  +N+V W +++ GY MHG   +A   FD M++ G  PD ++F  +L ACS SG+
Sbjct: 443 CFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGL 502

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
            ++G  YF+SMS ++GI AR EHYAC+V LL RA +L++A  +I  MP+ P   +W ALL
Sbjct: 503 TEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           + CR+H NV LGE+AA +L ELE    G+Y LLSNIYA+ G W +V R+R +MK+ G++K
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PGCSW++ K        GD++HPQ  +I E L  L   +K +GY P+ +F L DV++++
Sbjct: 623 NPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQDVEEQD 682

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIR 786
           K  +L  HSEKLA+ +G+L T PG P++
Sbjct: 683 KEQILCGHSEKLAVVFGLLNTPPGYPLQ 710



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 258/564 (45%), Gaps = 94/564 (16%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPAL---SLLQRISPSPFSVFWWNA 105
           SL+Q    H  I+   L +   +HL    +SH A +      +L+  + P P +VF ++ 
Sbjct: 28  SLSQTRQAHAHILKTGLFN--DTHLATKLLSHYANNMCFADATLVLDLVPEP-NVFSFST 84

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           LI    +     +A   F QM+ RG  PD    P  +KAC  L + +    VH +   SG
Sbjct: 85  LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           FDS+ FV ++L+ MY +C+ +  A ++FD MF+P   D+VSW+ +VAAYA+ G  +    
Sbjct: 145 FDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP---DVVSWSALVAAYARQGCVDEAKR 201

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWS-----------RGKQ------------C 262
           LF+ M GD  VQ + +S    ++     G +S           RG +             
Sbjct: 202 LFSEM-GDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 263 GMMEEA-------KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
           G +E+          V ++  V D    +A++  Y +     +   +F +M      ++V
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDH----MDV 316

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQ----------------------------------- 340
            + +A I G ++ G    +L +FRQ                                   
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFRE 376

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           MQ  G++PN VT+  LL  C ++ AL+ GK  HC++++R +S       D+ V +ALIDM
Sbjct: 377 MQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIST------DVYVGSALIDM 430

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC  +  +R+ FD I  KN  +  W  +I  Y+ +G A +A+ +F  M  Q    KP+
Sbjct: 431 YAKCGRIQASRICFDGIPTKN--LVCWNAVIAGYAMHGKAKEAMEIFDLM--QRSGQKPD 486

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQY--EMLIPFVANCLIDMYSRSGDIDTARV 518
             + +C L AC++      G   +   + ++Y  E  +   A C++ + SR+G ++ A  
Sbjct: 487 IISFTCVLSACSQSGLTEEG-SYYFNSMSSKYGIEARVEHYA-CMVTLLSRAGKLEQAYA 544

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMH 541
           +   +    +   W +L++   +H
Sbjct: 545 MIRRMPVNPDACVWGALLSSCRVH 568


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/689 (35%), Positives = 386/689 (56%), Gaps = 26/689 (3%)

Query: 64  NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
           N+     S LI  Y  +     A  L  ++ P+   V W N ++   V+   P++A ++F
Sbjct: 4   NVDEFVGSSLIKLYAENGCIEDARRLFDKM-PNKDCVLW-NVMLNGFVKCGEPNSAVKVF 61

Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
             M      P+  TF  VL  C     S  G+ +H ++ S GF  +  V NAL+AMY++ 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             LS A +LF+ M      ++V+WN ++A + Q+G  +   +LF+ M     V  D ++ 
Sbjct: 122 GQLSDALKLFNTMPDT---NVVTWNGMIAGFVQNGFMDEASLLFSEMI-SAGVSPDSITF 177

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
            + L +     +  +GK     E    +       DV   +A++  Y +      A  +F
Sbjct: 178 ASFLPSVTESASLKQGK-----EIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIF 232

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
           K    ++  +++V  +A+I+GY   G  ++AL++FR +    + PN VTL S+L  CA +
Sbjct: 233 K----QSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGL 288

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
             L LGKE H   +K  L       +   V +A++DMYAKC  +D+A  +F  +  K  D
Sbjct: 289 ATLNLGKELHANILKHGLD------ERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK--D 340

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
              W  +I + SQNG   +A+ LF QM ++   +  +  ++S AL ACA L AL  G+ I
Sbjct: 341 AVCWNAIITNCSQNGKPQEAIDLFRQMGREG--LSYDCVSISAALSACANLPALHHGKAI 398

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           H+++++  ++  + F  + LIDMY + G++  AR VFD ++++N VSW S++  YG HG 
Sbjct: 399 HSFMIKGAFDSEV-FAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGH 457

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
            + +   F +M ++G+ PD VTFL +L AC H+G VD+G++YF  M++E+GI AR EHYA
Sbjct: 458 LEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYA 517

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           CIVDL GRA RL+EA E I+ MP  P   +W  LL  CR+H NVEL E+A+  LL+L+ E
Sbjct: 518 CIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPE 577

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
             G Y LLSN++A+AG+W  V +IRSLMK  GV+K PG SW++  + T  F   D +HP+
Sbjct: 578 NSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPE 637

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTSFALH 752
           S +IY +L  L+  ++  GY P+    +H
Sbjct: 638 SAQIYSVLNNLLLELRKEGYCPKPYLPMH 666



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 156/540 (28%), Positives = 267/540 (49%), Gaps = 34/540 (6%)

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           GF+ + FV ++L+ +YA    +  AR+LFD+M      D V WN ++  + + G+    +
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNK---DCVLWNVMLNGFVKCGEPNSAV 58

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSW 283
            +F  M  + + + + ++  + LS CAS      G Q  G++      F      D +  
Sbjct: 59  KVFEDMR-NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHF------DPLVA 111

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+V  YS+ G   DA  LF  M       NVVTW+ +IAG+ Q G   EA  +F +M  
Sbjct: 112 NALVAMYSKFGQLSDALKLFNTMPDT----NVVTWNGMIAGFVQNGFMDEASLLFSEMIS 167

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+ +T  S L       +L  GKE H Y ++  +++      D+ + +ALID+Y K
Sbjct: 168 AGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIAL------DVFLKSALIDIYFK 221

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C+ V +A  +F      N D+   T +I  Y  NG  NDAL +F  + ++   + PNA T
Sbjct: 222 CRDVGMACKIFK--QSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEK--MSPNAVT 277

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L+  L ACA LA L  G+++HA +L++  +     V + ++DMY++ G +D A  +F  +
Sbjct: 278 LASVLPACAGLATLNLGKELHANILKHGLDER-RHVGSAIMDMYAKCGRLDLAYQIFRRM 336

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            +++ V W +++T    +G   +A   F QM +EGL+ D V+    L AC++   +  G 
Sbjct: 337 PEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGK 396

Query: 584 KYFDSMSK-EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
                M K  F     AE  + ++D+ G+   L  A   +  M  E   + W +++    
Sbjct: 397 AIHSFMIKGAFDSEVFAE--SALIDMYGKCGNLSVA-RCVFDMMREKNEVSWNSIIAAYG 453

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYA--NAGRW-KDVARIRSLMKHTGVKKR 699
            H ++E+     +++LE   + D   T L+ + A  +AG+  K +   R + +  G+  R
Sbjct: 454 SHGHLEVSLALFHKMLEDGIQPD-HVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPAR 512


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/662 (37%), Positives = 367/662 (55%), Gaps = 31/662 (4%)

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+  YA  + L  A  LF+++      D +SWN+++ A     D    + LF  M     
Sbjct: 94  LLLAYAHNNNLHEAINLFNQI-PSNTKDTISWNSVIKASIICNDFVTAVKLFDEMP---- 148

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--KDVVSWNAMVTGYSRI 293
            Q + +S    +    S G          + EA++ F  M    KDV +WNAMV GY   
Sbjct: 149 -QRNSISWTTIIHGFLSTGR---------VNEAERFFNAMPYVDKDVATWNAMVNGYCNN 198

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVT 352
           G   DA  LF +M   +V    ++W+++I G  + G  ++AL  F+ M  F G+  +  T
Sbjct: 199 GRVNDALRLFCQMPSRDV----ISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTT 254

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           LV  LS  A +     G + HC   K           D  V  +L+  YA CK +  A  
Sbjct: 255 LVCGLSAAAKILDFYAGIQIHCCMFKFGFCCG----LDEFVSASLVTFYASCKRMGDACK 310

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F     KN  V  WT ++     N    +AL +F +M + +  V PN  + + AL +C 
Sbjct: 311 VFGETVCKN--VVVWTALLTGCGLNDKHVEALEVFSEMMRFN--VVPNESSFTSALNSCV 366

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L  L  GR IHA  ++   E  + +  N L+ MYS+ G I  A  VF  + ++NVVSW 
Sbjct: 367 GLEDLEKGRVIHAAGIKMGLENAV-YTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWN 425

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           S++ G   HG G  A   F +M +EG+  D +T   LL ACS SGM+ +   +F   +++
Sbjct: 426 SVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARK 485

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
             +    EHYAC+VD+LGR   ++EA  L   MP+E   ++W+ LL+ CR+H+++++ E 
Sbjct: 486 RSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVAER 545

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
           AA R+ E+E +   +Y LLSN+YA++ RW +VARIR  MKH G+ K+PG SW+  K    
Sbjct: 546 AAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITLKGMRH 605

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F   DR+HP +++IYE L  L  +++ +GY+P   FALHDV+ E+  ++L  HSE+LA+
Sbjct: 606 EFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLSYHSERLAI 665

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           A+G+L+T  G+ I I KNLR+CGDCH+AIT ++ I+N EI++RDS+RFHHFK G C+C  
Sbjct: 666 AFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKNGICSCGD 725

Query: 833 YW 834
           YW
Sbjct: 726 YW 727



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 218/503 (43%), Gaps = 33/503 (6%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+ AY  +N    A++L  +I  +      WN++I+ ++       A +LF +M    
Sbjct: 92  TKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEM---- 147

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P   +  +     G L + R   +          D +V   NA++  Y     ++ A 
Sbjct: 148 --PQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDAL 205

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           +LF +M      D++SW +I+    ++G +   L  F  M G   V     +LV  LSA 
Sbjct: 206 RLFCQMPSR---DVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAA 262

Query: 251 ASLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
           A +  +  G Q  C M +     F      D     ++VT Y+      DA  +F     
Sbjct: 263 AKILDFYAGIQIHCCMFK-----FGFCCGLDEFVSASLVTFYASCKRMGDACKVFG---- 313

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           E V  NVV W+A++ G        EAL+VF +M    + PN  +  S L+ C  +  L  
Sbjct: 314 ETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEK 373

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G+  H   IK  L       + +   N+L+ MY+KC  +  A  +F  I  KN  V +W 
Sbjct: 374 GRVIHAAGIKMGLE------NAVYTGNSLVVMYSKCGFIGDALCVFKGICEKN--VVSWN 425

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I   +Q+G    AL LF +M ++   V+ +  TL+  L AC+R   L+  R    Y  
Sbjct: 426 SVIVGCAQHGCGTWALVLFKEMLREG--VESDEITLTGLLSACSRSGMLQKARCFFGYFA 483

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
           R +   L      C++D+  R G+++ A  +  ++  + N + W  L++   +H   D A
Sbjct: 484 RKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVA 543

Query: 548 HWAFDQMRKEGLAPDGVTFLVLL 570
             A  ++ +  + PD     VLL
Sbjct: 544 ERAAKRIFE--MEPDCSAAYVLL 564



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A  +F +MMR    P+E +F   L +C  L     G  +HA     G ++ V+  N+L+ 
Sbjct: 339 ALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVV 398

Query: 179 MYARCDTLSYARQLFDEMFQPGICD--IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           MY++C  +  A  +F      GIC+  +VSWN+++   AQ G     L+LF  M  +  V
Sbjct: 399 MYSKCGFIGDALCVF-----KGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLRE-GV 452

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           + D ++L   LSAC+  G   + + C     A+K   ++ V+    +  MV    R G  
Sbjct: 453 ESDEITLTGLLSACSRSGMLQKAR-CFFGYFARKRSMKLTVEH---YACMVDVLGRCGEV 508

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM--QFCGLEPNVVTLV 354
           E+A AL   M    V+ N + W  +++        H +LDV  +   +   +EP+     
Sbjct: 509 EEAEALATSMP---VEANSMVWLVLLSA----CRVHSSLDVAERAAKRIFEMEPDCSAAY 561

Query: 355 SLLS 358
            LLS
Sbjct: 562 VLLS 565


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/746 (33%), Positives = 392/746 (52%), Gaps = 72/746 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I   V+    ++A  +F +M+     P+  T   +L AC  L + R G ++HA+  
Sbjct: 13  WNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHAIAL 72

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   NV+V  +++ MY++C +  YA ++F +       +   WN ++AAY   G  E 
Sbjct: 73  KHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENK---NTAMWNEMIAAYVNEGKVED 129

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L L   M      Q DG               W                      DV++
Sbjct: 130 ALGLLRSM------QKDG---------------WK--------------------PDVIT 148

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +N +++G++R G    AF L  +M Q  +K NVV+++ +I+G+ Q G  +EAL VFR MQ
Sbjct: 149 YNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQ 208

Query: 343 F------------CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
                          + PN +T+   L  CA +     GKE H YT++     +G  P +
Sbjct: 209 SPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLR-----NGFEP-N 262

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           + V +AL+DMYAKC  +D A  +F  I    R+  +W  ++  Y  N    +AL LF +M
Sbjct: 263 IFVSSALVDMYAKCHDMDSANKVFFRI--DGRNTVSWNALMAGYIYNKQPEEALKLFLEM 320

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
             +   ++P++ T      AC  +AA+RFGR +H Y  + Q + L   +A+ LIDMY++ 
Sbjct: 321 LGEG--LQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKC 378

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G I  A+ VFD+  +++V  W ++++ + +HG+   A   F QM   G+ PD +TF+ LL
Sbjct: 379 GSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLL 438

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            AC+  G+V++G KYF+SM   +G++A  EHY C+V +LG A  LDEA++ I  MP  P 
Sbjct: 439 SACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPD 498

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
             +W  LL  CR+H+N E+GE AA  L ELE +   +Y LLSNIY ++G W     +RS 
Sbjct: 499 ACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSF 558

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           M+   +     CS++       TF  G+ +HP+ ++I E    L ++++  GY P     
Sbjct: 559 MRGRKLLTIKECSYLTVGSHICTFKGGESSHPELEEILEAWDKLARKMELSGYFPLDPV- 617

Query: 751 LHDVDDEEKGDLLFE--HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
               DDEEK    F   H+EKLA+ +GI+++    P+ ++KN+R+C DCH++   IS I 
Sbjct: 618 ---FDDEEKELDPFSCLHTEKLAICFGIISSNTYRPVHVSKNIRMCIDCHTSAKLISKID 674

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
             EI ++D   +HH K+G C+C+  W
Sbjct: 675 GREIFVKDVCFYHHMKDGICSCQDRW 700



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 58/348 (16%)

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M +  ++  V +W+ +I+G  Q G+  +ALD+F +M +   +PN++T+ S+L  C  + A
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L LGK  H   +K  +        ++ V  ++IDMY+KC S D A  +F  +  +N++ A
Sbjct: 61  LRLGKAIHAIALKHGIV------GNVYVEGSVIDMYSKCGSYDYAEKVF--VKAENKNTA 112

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  MI +Y   G   DAL L   M Q+D   KP+  T +  L   AR            
Sbjct: 113 MWNEMIAAYVNEGKVEDALGLLRSM-QKDGW-KPDVITYNTILSGHARNG---------- 160

Query: 486 YVLRNQ-YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
             L+ Q +E+L   V   L                     + NVVS+  L++G+   GL 
Sbjct: 161 --LKTQAFELLSEMVQMGL---------------------KPNVVSFNVLISGFQQSGLS 197

Query: 545 DKAHWAFDQMRKE------------GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            +A   F  M+               + P+ +T    L AC+   +  QG K     +  
Sbjct: 198 YEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQG-KEIHGYTLR 256

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G        + +VD+  + + +D A ++   +    T + W AL+ G
Sbjct: 257 NGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNT-VSWNALMAG 303


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 339/576 (58%), Gaps = 41/576 (7%)

Query: 291 SRIGS---FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
           SR+ S   F  +F+  K + Q      V  W+  +  +A+     +A+ +F +++   + 
Sbjct: 51  SRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDIS 110

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+  T   +L  C+ +  +  GK  H Y  K  L        ++ + N ++ +YA C  +
Sbjct: 111 PDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQ------SNMFLQNMIVHLYALCGEI 164

Query: 408 DVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQNG 438
            VAR +FD +  ++                             R+V +WT MIG Y+Q G
Sbjct: 165 GVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCG 224

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            + +A+ LF +M  +D  + PN  T+   L+ACA +  L  GR+IH +  R+ YE  I  
Sbjct: 225 KSKEAIDLFLEM--EDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIR- 281

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V N LIDMY + G ++ A  +FDN+++R VVSW++++ G   HG  + A   F++M   G
Sbjct: 282 VCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTG 341

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + P+ VTF+ +L+ACSH GMV++G KYF SM++++GI  R EHY C+VDL  RA  L EA
Sbjct: 342 VKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEA 401

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            E I  MP+ P  ++W ALL GC++H N++L E A   L +L+   DG Y +LSNIYA A
Sbjct: 402 HEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEA 461

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           GRW+DVAR+R LM+  GVKK PG S +  +     F  GD THPQ+++I++    L+QR+
Sbjct: 462 GRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRM 521

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  GYVP TS  L D+++++K   L+ HSEKLA+ +G++ T PGT IRI KNLR+C DCH
Sbjct: 522 KLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCH 581

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +A+  IS++   EI++RD NRFH FK GSC+C  YW
Sbjct: 582 AALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 159/360 (44%), Gaps = 63/360 (17%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQN--LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           ++ LL    S  ++  +H  ++  N  L+ +P S + +    +++ S A  + Q +  S 
Sbjct: 18  STHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDAS- 76

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
             V  WN  +R       P +A  LF ++      PD YT  FVLKAC  L   R G  V
Sbjct: 77  -EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIV 135

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   G  SN+F+ N ++ +YA C  +  AR++FD+M Q    D+++WN ++A   + 
Sbjct: 136 HGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQR---DVITWNIMIARLVKM 192

Query: 218 GDAEGGLMLFARM------------------------------TGDVKVQGDGVSLVNAL 247
           GDAEG   LFA M                                D  +  + V++V  L
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVL 252

Query: 248 SACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVV 281
            ACA +G    G+                          +CG +E+A ++F+ M+ + VV
Sbjct: 253 VACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVV 312

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SW+AM+ G +  G  EDA ALF KM    VK N VT+  ++   +  G   +    F  M
Sbjct: 313 SWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASM 372


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/574 (39%), Positives = 347/574 (60%), Gaps = 24/574 (4%)

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           EA  VF      D      ++  Y+ + +   A  +F    +  VK N+  W+A++   A
Sbjct: 275 EADPVFR----SDPFLSTRLIEAYAALSALPAARQVFD---EAPVK-NIFVWNAMLKALA 326

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG-----KETHCYTIKRVL 381
              HG EAL     M   G+  +  +    L  C +  A  L      +E H + I+R  
Sbjct: 327 LADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGY 386

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
              G H     V   LID YAK   V  A  +F ++   +R++ +W+ MIG Y++N    
Sbjct: 387 ---GLHTH---VATTLIDCYAKLGIVSYAERVFTSM--PDRNLVSWSAMIGCYAKNERPG 438

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           DA+ +F +M   D  + PN+ T+   L ACA + AL  G+ +HAY+LR  +++L+  V N
Sbjct: 439 DAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVS-VLN 497

Query: 502 CLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
            L+ MY + G ++T R +F+ + ++RNVVSW SL++GYGMHG G ++   F++M +EG++
Sbjct: 498 ALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGIS 557

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           P+ +TF+ +L ACSH G+V+QG K F+SM  E+ ++ RAEHYAC+VDLLGRA RLDEAVE
Sbjct: 558 PNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVE 616

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           LI+ M ++P+P +W +LL  CRIH +VE  E+A + L +LE    G+Y LL++IYA A  
Sbjct: 617 LIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKL 676

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
              V  ++ L++   ++K PGCSW++ K+   +F   D  +PQ +++  ++   V ++K 
Sbjct: 677 QNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKN 736

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GYVP T   L+D+++EEK  +L  HSEKLA+A+G++ T  G  IRITKNLR+C DCHS 
Sbjct: 737 EGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSV 796

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             FIS   + EI++RD NRFHHF+ G C+C+ YW
Sbjct: 797 TKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 221/506 (43%), Gaps = 62/506 (12%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-FDSNVFVCNALMAMYARCDTLSYARQ 191
           P + T+  +L A      +   ++VH  + +   F S+ F+   L+  YA    L  ARQ
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FDE     + +I  WN ++ A A +   E  L   A M G + V  D  S  + L AC 
Sbjct: 306 VFDEA---PVKNIFVWNAMLKALALADHGEEALTCLADM-GRLGVPVDSYSYAHGLKACI 361

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           +           + E       R           ++  Y+++G    A  +F  M     
Sbjct: 362 AASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDR-- 419

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF--CGLEPNVVTLVSLLSGCASVGALLLG 369
             N+V+WSA+I  YA+     +A+ +F++M      L PN +T+VS+L  CA V AL  G
Sbjct: 420 --NLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQG 477

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           K  H Y ++R   +  S      V+NAL+ MY KC  ++  R +F+ I  + R+V +W  
Sbjct: 478 KVLHAYILRRGFDLLVS------VLNALMAMYMKCGCLETGRYIFNWIG-RRRNVVSWNS 530

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I  Y  +G   ++L +F +M ++   + PN  T    L AC+ +  +  G+++   ++ 
Sbjct: 531 LISGYGMHGFGRESLQVFEEMIEEG--ISPNIITFVSVLGACSHVGLVEQGKKLFESMVE 588

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAH 548
                     A C++D+  R+G +D A  +  +++ Q +   W SL+    +HG     H
Sbjct: 589 YNVTPRAEHYA-CMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHG-----H 642

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             + +M                 ACSH          FD   +  G      +Y  + D+
Sbjct: 643 VEYAEM-----------------ACSH---------LFDLEPRNAG------NYVLLADI 670

Query: 609 LGRA---NRLDEAVELIEGMPMEPTP 631
             RA   N++D   EL+E   +E  P
Sbjct: 671 YARAKLQNQVDVLKELLEEHALEKVP 696



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 36/276 (13%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-----GELPSSRC 153
           ++F WNA+++        + A      M R G   D Y++   LKAC       LP+S  
Sbjct: 314 NIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASAR 373

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
              +HA     G+  +  V   L+  YA+   +SYA ++F  M      ++VSW+ ++  
Sbjct: 374 VREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDR---NLVSWSAMIGC 430

Query: 214 YAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGK------------ 260
           YA++      + +F  M   D  +  + +++V+ L ACA +    +GK            
Sbjct: 431 YAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFD 490

Query: 261 --------------QCGMMEEAKKVFERM-KVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                         +CG +E  + +F  + + ++VVSWN++++GY   G   ++  +F++
Sbjct: 491 LLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEE 550

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           M +E +  N++T+ +V+   +  G   +   +F  M
Sbjct: 551 MIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM 586



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 23/236 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSSVHAV 160
           W+A+I    +   P +A ++F +MM       P+  T   VL AC  + +   G  +HA 
Sbjct: 424 WSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAY 483

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I   GFD  V V NALMAMY +C  L   R +F+ + +    ++VSWN++++ Y   G  
Sbjct: 484 ILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRR--NVVSWNSLISGYGMHGFG 541

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L +F  M  +  +  + ++ V+ L AC+ +         G++E+ KK+FE M   +V
Sbjct: 542 RESLQVFEEMIEE-GISPNIITFVSVLGACSHV---------GLVEQGKKLFESMVEYNV 591

Query: 281 VS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
                 +  MV    R G  ++A  L + MR   ++ +   W +++   A R HGH
Sbjct: 592 TPRAEHYACMVDLLGRAGRLDEAVELIQSMR---IQPSPQVWGSLLG--ACRIHGH 642



 Score = 43.5 bits (101), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 49/118 (41%)

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           L  P   T    L+A AR         +H  +  +      PF++  LI+ Y+    +  
Sbjct: 243 LPAPTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPA 302

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           AR VFD    +N+  W +++    +   G++A      M + G+  D  ++   L AC
Sbjct: 303 ARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKAC 360


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/733 (34%), Positives = 395/733 (53%), Gaps = 60/733 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI    +L     AF LF+QM R G  PD  TF  +L  C         + V   I 
Sbjct: 112 WTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQII 171

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+DS + V N                                  T+V +Y +S   + 
Sbjct: 172 KLGYDSRLIVGN----------------------------------TLVDSYCKSNRLDL 197

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF  M      + D  +    L A   L     G+Q         V +   V +V  
Sbjct: 198 ACQLFKEMP-----EIDSFTFAAVLCANIGLDDIVLGQQIHSF-----VIKTNFVWNVFV 247

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  YS+  S  DA  LF +M +++     V+++ +I+GYA  G    A D+FR++Q
Sbjct: 248 SNALLDFYSKHDSVIDARKLFDEMPEQDG----VSYNVIISGYAWDGKHKYAFDLFRELQ 303

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
           F   +       ++LS  ++     +G++ H  TI  V + D     +++V N+L+DMYA
Sbjct: 304 FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI--VTTADS----EILVGNSLVDMYA 357

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC   + A ++F  +   +R    WT MI +Y Q G   + L LF +M Q    V  +  
Sbjct: 358 KCGKFEEAEMIFTNLT--HRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS--VIADQA 413

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L A A +A+L  G+Q+H++++++ + M   F  + L+D+Y++ G I  A   F  
Sbjct: 414 TFASLLRASASIASLSLGKQLHSFIIKSGF-MSNVFSGSALLDVYAKCGSIKDAVQTFQE 472

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  RN+VSW ++++ Y  +G  +    +F +M   GL PD V+FL +L ACSHSG+V++G
Sbjct: 473 MPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEG 532

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L +F+SM++ + +  R EHYA +VD+L R+ R +EA +L+  MP++P  I+W ++LN CR
Sbjct: 533 LWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACR 592

Query: 643 IHANVELGELAANRLLELESEKDGS-YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           IH N EL   AA++L  +E  +D + Y  +SNIYA AG+W++V+++   M+  GVKK P 
Sbjct: 593 IHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPA 652

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SWV+ K  T  F   DR HPQ ++I + +  L + ++ +GY P TS ALH+ D++ K +
Sbjct: 653 YSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVE 712

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+LA+A+ +++T  G+PI + KNLR C DCH+AI  IS I+  EI +RDS RFH
Sbjct: 713 SLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFH 772

Query: 822 HFKEGSCTCKGYW 834
           HF++G C+C  +W
Sbjct: 773 HFRDGFCSCGDFW 785



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 122/517 (23%), Positives = 226/517 (43%), Gaps = 92/517 (17%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +++ A I  +GFD +    N  +  + +   LS ARQLF++M      + VS N +++ Y
Sbjct: 32  NNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHK---NTVSTNMMISGY 88

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            +SG+                                 LG            EA+K+F+ 
Sbjct: 89  VKSGN---------------------------------LG------------EARKLFDG 103

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           M  +  V+W  ++ GYS++  F++AF LF +M++   + + VT+  +++G      G++ 
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 163

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSG-----------------------------CASVG- 364
             V  Q+   G +  ++   +L+                               CA++G 
Sbjct: 164 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGL 223

Query: 365 -ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
             ++LG++ H + IK           ++ V NAL+D Y+K  SV  AR +FD +  +  D
Sbjct: 224 DDIVLGQQIHSFVIKTNFVW------NVFVSNALLDFYSKHDSVIDARKLFDEMPEQ--D 275

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
             ++ V+I  Y+ +G    A  LF ++  Q        F  +  L   +       GRQI
Sbjct: 276 GVSYNVIISGYAWDGKHKYAFDLFREL--QFTAFDRKQFPFATMLSIASNTLDWEMGRQI 333

Query: 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           HA  +    +  I  V N L+DMY++ G  + A ++F NL  R+ V WT++++ Y   G 
Sbjct: 334 HAQTIVTTADSEI-LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGF 392

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
            ++    F++MR+  +  D  TF  LL A +    +  G K   S   + G  +     +
Sbjct: 393 YEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGS 451

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            ++D+  +   + +AV+  + MP +   + W A+++ 
Sbjct: 452 ALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 487


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 325/545 (59%), Gaps = 16/545 (2%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y + G+  DA  +F KM   +V    V+W+ +IAGYAQ     EA+ +   M      PN
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDV----VSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPN 57

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             T  SLL    + G   +G++ H       L+V  +  +D+ V +AL+DMYA+C+ +D+
Sbjct: 58  GFTFTSLLKATGACGGCSIGEQMH------ALAVKYNWDEDVYVGSALLDMYARCEQMDM 111

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A ++FD +  KN    +W  +I  +++       L  F +M  Q        FT S    
Sbjct: 112 AIMVFDRLVSKNE--VSWNALIAGFARKADGETTLMKFAEM--QRNGFGATHFTYSSMFS 167

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           A AR+ AL  GR +HA+++++  + L  FV N ++ MY++SG +  AR VFD + +R++V
Sbjct: 168 AFARIGALEQGRWVHAHLIKSG-QKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLV 226

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +W +++T    +GLG +A   F+++RK G+  + +TFL +L ACSH G+V +G  YFD M
Sbjct: 227 TWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM 286

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
            K++ +    +HY   VDLLGRA  L EA+  +  MPMEPT  +W ALL  CR+H N ++
Sbjct: 287 -KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKM 345

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
           G+ AA+ + EL+ +  G   LL NIYA+ G+W D AR+R +MK TGVKK P CSWVQ + 
Sbjct: 346 GQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIEN 405

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F   D THP+S  IY +   +  RIK  GYVP T+  L  ++++E+   L  HSEK
Sbjct: 406 SVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEK 465

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           +ALA+ ++    G  IRI KN+RICGDCHSA  ++S +   EI++RD+NRFHHF EGSC+
Sbjct: 466 IALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCS 525

Query: 830 CKGYW 834
           C  YW
Sbjct: 526 CGDYW 530



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 166/382 (43%), Gaps = 64/382 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  LI    +  +P  A  L   M+R  + P+ +TF  +LKA G       G  +HA+  
Sbjct: 26  WTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAV 85

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +D +V+V +AL+ MYARC+ +  A  +FD +      + VSWN ++A +A+  D E 
Sbjct: 86  KYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSK---NEVSWNALIAGFARKADGET 142

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            LM FA M  +        +  +  SA A +G   +G+                      
Sbjct: 143 TLMKFAEMQRN-GFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTML 201

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G M +A+KVF+RM  +D+V+WN M+T  ++ G  ++A A F+++R+  ++LN +
Sbjct: 202 GMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQI 261

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLLS--------------- 358
           T+ +V+   +  G   E    F  M+   ++P +   V+ V LL                
Sbjct: 262 TFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKM 321

Query: 359 ----GCASVGALLLGKETH------CYTIKRVLSVDGSHPDDLMVINALIDMYAKC-KSV 407
                 A  GALL     H       Y    V  +D   PDD      L ++YA   K  
Sbjct: 322 PMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELD---PDDTGPPVLLYNIYASTGKWN 378

Query: 408 DVARV--MFDAIAPKNRDVATW 427
           D ARV  M  A   K     +W
Sbjct: 379 DAARVRKMMKATGVKKEPACSW 400



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 182/398 (45%), Gaps = 35/398 (8%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY +C  +S AR +FD+M      D+VSW  ++A YAQ+      + L   M    + + 
Sbjct: 1   MYCKCGAVSDARHVFDKMPSR---DVVSWTYLIAGYAQNYMPAEAIGLLPDML-RARFRP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           +G +  + L A  + G  S G+Q   +       E     DV   +A++  Y+R    + 
Sbjct: 57  NGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDE-----DVYVGSALLDMYARCEQMDM 111

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  +F ++    V  N V+W+A+IAG+A++  G   L  F +MQ  G      T  S+ S
Sbjct: 112 AIMVFDRL----VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 167

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
             A +GAL  G+  H + IK    +         V N ++ MYAK  S+  AR +FD + 
Sbjct: 168 AFARIGALEQGRWVHAHLIKSGQKLTA------FVGNTMLGMYAKSGSMVDARKVFDRM- 220

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
              RD+ TW  M+ + +Q G   +A+A F ++ +    ++ N  T    L AC+    ++
Sbjct: 221 -DKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG--IQLNQITFLSVLTACSHGGLVK 277

Query: 479 FGRQ----IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFDNLKQRNVVSWTS 533
            G+     +  Y ++ + +  + FV     D+  R+G +  A + VF    +     W +
Sbjct: 278 EGKHYFDMMKDYNVQPEIDHYVSFV-----DLLGRAGLLKEALIFVFKMPMEPTAAVWGA 332

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           L+    MH       +A D + +  L PD     VLLY
Sbjct: 333 LLGACRMHKNAKMGQYAADHVFE--LDPDDTGPPVLLY 368



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 5/183 (2%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY KC +V  AR +FD +   +RDV +WT +I  Y+QN    +A+ L P M +     +P
Sbjct: 1   MYCKCGAVSDARHVFDKMP--SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRAR--FRP 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N FT +  L A         G Q+HA  ++  ++  + +V + L+DMY+R   +D A +V
Sbjct: 57  NGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDV-YVGSALLDMYARCEQMDMAIMV 115

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD L  +N VSW +L+ G+     G+     F +M++ G      T+  +  A +  G +
Sbjct: 116 FDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 175

Query: 580 DQG 582
           +QG
Sbjct: 176 EQG 178



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 14/198 (7%)

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY + G +  AR VFD +  R+VVSWT L+ GY  + +  +A      M +    P+G T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F  LL A    G    G +   +++ ++         + ++D+  R  ++D A+ + + +
Sbjct: 61  FTSLLKATGACGGCSIG-EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG----SYTLLSNIYA----- 676
            +    + W AL+ G    A+   GE    +  E++    G    +Y+ + + +A     
Sbjct: 120 -VSKNEVSWNALIAGFARKAD---GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 175

Query: 677 NAGRWKDVARIRSLMKHT 694
             GRW     I+S  K T
Sbjct: 176 EQGRWVHAHLIKSGQKLT 193


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/766 (34%), Positives = 408/766 (53%), Gaps = 58/766 (7%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSSRCGSSVHA 159
            W+ ++   VR+ L + A  LF QM   G  P+ +    ++ AC   G +     G  VH 
Sbjct: 342  WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQVHG 399

Query: 160  VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
             +  +G   +V+V  AL+  Y     +  A++LF+EM      ++VSW +++  Y+ SG+
Sbjct: 400  FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDH---NVVSWTSLMVGYSDSGN 456

Query: 220  AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                L ++ RM  +  V G+  +     S+C  L     G Q  +    +  FE      
Sbjct: 457  PGEVLNVYQRMRQE-GVSGNQNTFATVTSSCGLLEDQVLGYQV-LGHIIQYGFE----DS 510

Query: 280  VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            V   N++++ +S   S E+A  +F  M +     ++++W+A+I+ YA  G   E+L  F 
Sbjct: 511  VSVANSLISMFSSFSSVEEACYVFDHMNE----CDIISWNAMISAYAHHGLCRESLRCFH 566

Query: 340  QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
             M+    E N  TL SLLS C+SV  L  G+  H   +K  L +D     ++ + N L+ 
Sbjct: 567  WMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK--LGLD----SNVCICNTLLT 620

Query: 400  MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK---- 455
            +Y++    + A ++F A+    RD+ +W  M+  Y Q+G   D L +  ++ Q  K    
Sbjct: 621  LYSEAGRSEDAELVFQAMT--ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRV 678

Query: 456  -----------------------LVK----PNAFTLSCALMACARLAALRFGRQIHAYVL 488
                                   L++    P  +    +L A A LA L  G+Q+H  V+
Sbjct: 679  TWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVI 738

Query: 489  RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
            +  +E  +  V N  +DMY + G++     +      R+ +SW  L++ +  HG   KA 
Sbjct: 739  KLGFESDL-HVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKAR 797

Query: 549  WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
              F +M K G  PD VTF+ LL AC+H G+VD+GL Y+DSM++EFG+    EH  CI+DL
Sbjct: 798  ETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDL 857

Query: 609  LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
            LGR+ RL  A   I+ MP+ P  + W +LL  CRIH N+EL    A  LLEL+   D +Y
Sbjct: 858  LGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAY 917

Query: 669  TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
             L SN+ A +G+W+DV  +R  M    +KK+P CSWV+ K+   +F +G++ HPQ+ +I 
Sbjct: 918  VLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRIS 977

Query: 729  EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
              L  L++  K  GYVP TSFALHD+D+E+K   L+ HSE+LALA+G++ T   + +RI 
Sbjct: 978  AKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIF 1037

Query: 789  KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+CGDCHS   F+S I+  +I+LRD  RFHHF  G C+C  YW
Sbjct: 1038 KNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 219/459 (47%), Gaps = 50/459 (10%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WNA+I         D++F +F  M+R G  PD YT   VL+A  E       + +H 
Sbjct: 158 VVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHG 217

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +I   G+ S   V   L+  YA+  +L  A+ L   M +    D+ S   ++  YA  G 
Sbjct: 218 IITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKK---DLFSSTALITGYAHEG- 273

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                           +   G +L++  +            + G +E+AK+ F+ M+ K+
Sbjct: 274 ----------------IYTMGNALIDMYA------------KSGEIEDAKRAFDEMEEKN 305

Query: 280 VVSWNAMVTGYSRIGSFEDAFA--LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           V+SW ++++GY++ G    A A  +F +MR      N  +WS +++GY + G   EA+ +
Sbjct: 306 VISWTSLISGYAKHGYGHMAHARYVFDEMRHR----NEASWSTMLSGYVRVGLYEEAVGL 361

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           F QM   G+EPN   + SL++ C+  G +   G + H + +K  +        D+ V  A
Sbjct: 362 FCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGI------LGDVYVGTA 415

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+  Y     V  A+ +F+ +   N  V +WT ++  YS +G   + L ++ +M Q+   
Sbjct: 416 LVHFYGSIGLVYNAQKLFEEMPDHN--VVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG-- 471

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V  N  T +    +C  L     G Q+  ++++  +E  +  VAN LI M+S    ++ A
Sbjct: 472 VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS-VANSLISMFSSFSSVEEA 530

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
             VFD++ + +++SW ++++ Y  HGL  ++   F  MR
Sbjct: 531 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMR 569



 Score =  165 bits (418), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 254/548 (46%), Gaps = 70/548 (12%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+ C +  + + G  +H  + ++GF S++ +   L+  Y +   +  AR +FD M +  
Sbjct: 36  ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPER- 94

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
              +VSW  +V+ Y+Q+G  E   +LF+ M      +  GV   +AL    S        
Sbjct: 95  --SVVSWTAMVSGYSQNGRFEKAFVLFSDM------RHCGVKANHALVDFHS-------- 138

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG ME+A  +F  M  +DVVSWNAM+ GY+  G  +D+F +F+ M +  +  +  T  +
Sbjct: 139 KCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGS 198

Query: 321 VIAGYAQRGH---GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           V+   A+ G     ++   +  Q+ +   +  +VT + L++  A  G+L   K+     +
Sbjct: 199 VLRASAEGGGLIIANQIHGIITQLGYGSYD--IVTGL-LINAYAKNGSLRSAKDLRKGML 255

Query: 378 KR------VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------- 421
           K+       L    +H     + NALIDMYAK   ++ A+  FD +  KN          
Sbjct: 256 KKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISG 315

Query: 422 ---------------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
                                R+ A+W+ M+  Y + G   +A+ LF QM+     V+PN
Sbjct: 316 YAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG--VEPN 373

Query: 461 AFTLSCALMACARLAAL-RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            F ++  + AC+R   +   G Q+H +V++    +   +V   L+  Y   G +  A+ +
Sbjct: 374 GFMVASLITACSRSGYMADEGFQVHGFVVKTGI-LGDVYVGTALVHFYGSIGLVYNAQKL 432

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F+ +   NVVSWTSLM GY   G   +    + +MR+EG++ +  TF  +  +C   G++
Sbjct: 433 FEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLL 489

Query: 580 DQGLKYFDSMSK--EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +  +  +  +    ++G          ++ +    + ++EA  + + M  E   I W A+
Sbjct: 490 EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAM 548

Query: 638 LNGCRIHA 645
           ++    H 
Sbjct: 549 ISAYAHHG 556


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/763 (32%), Positives = 394/763 (51%), Gaps = 42/763 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  + A+I    +      A  +F +M   G   +E++F  +L  C  L     G  +H
Sbjct: 135 NVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLH 194

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A++   GF +  FV NALM +Y +C  L    QLFDEM      DI SWNT++++  +  
Sbjct: 195 AIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHR---DIASWNTVISSVVKEM 251

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             E    LF  M      + D  +L   L A   L +    +                  
Sbjct: 252 MYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVIN 311

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG ++    +FE+M+V+DV++W  M+T Y   G  + A  +F KM       
Sbjct: 312 ALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPAR---- 367

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N ++++A+++G+ Q G G +AL  F +M   G+E    TL  +L+ C  +    + K+ H
Sbjct: 368 NSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIH 427

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            + +K     +        +  AL+DM  +C  +  A+ MF   +        WT MI  
Sbjct: 428 GFILKFGFGSNAC------IEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICG 481

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y++N    +A++LF Q   +  +V     + +  L  C  LA    G+QIH + L++ + 
Sbjct: 482 YARNAQPEEAISLFCQSQLEGAMVVDKVAS-TAVLGVCGTLAFHEMGKQIHCHALKSGFL 540

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  V N +I MYS+  ++D A  VF+ +   ++VSW  L+ G+ +H  GD+A   + +
Sbjct: 541 SDLG-VGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSK 599

Query: 554 MRKEGLAPDGVTFLVLLYACSH--SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           M K G+ PD VTF++++ A  H  S +VD   + F SM   + I    EHY  +V +LG 
Sbjct: 600 MEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGY 659

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
              L+EA E+I  MP+EP   +W ALL+ CRIH+N  +G+ AA  LL ++     +Y L+
Sbjct: 660 WGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILV 719

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+Y+  GRW     +R  M+  G +K PG SW+  +    +F+  D++HPQ++ I+  L
Sbjct: 720 SNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGL 779

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L+      GYVP TSF LH+V++ +K D LF HS K+A  YG+L T PG PIRI KN+
Sbjct: 780 ELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNI 839

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +CGDCH+ + ++S++   EI LRD++  H F  G C+CK YW
Sbjct: 840 LLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 882



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 50/332 (15%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + GM+  A KVF  +   +VVS+ AM++G+++      A  +F +MR   ++LN      
Sbjct: 117 KLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELN------ 170

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
                                +F        + V++L+ C  +  L LG + H   IK  
Sbjct: 171 ---------------------EF--------SFVAILTVCIRLLDLELGCQLHAIVIKM- 200

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                   +   V NAL+ +Y KC  +D    +FD +   +RD+A+W  +I S  +    
Sbjct: 201 -----GFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMP--HRDIASWNTVISSVVKEMMY 253

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A  LF  M + D   + + FTLS  L+A   LA++  GR+IHA+V++  +E  I  V 
Sbjct: 254 ERAFELFRDMRRIDGF-RIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFESNIS-VI 310

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LI  Y++ G I     +F+ ++ R+V++WT ++T Y   GL D A   FD+M     A
Sbjct: 311 NALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMP----A 366

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            + +++  +L     +G   + L +F  M +E
Sbjct: 367 RNSISYNAILSGFCQNGEGSKALAFFCRMVEE 398



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           + +HA + +   ++    +AN LI  Y + G +  A  VF  L   NVVS+T++++G+  
Sbjct: 92  KAVHASIFKLAEDI---HLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAK 148

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
                +A   F +MR  G+  +  +F+ +L  C     ++ G +   ++  + G      
Sbjct: 149 SNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ-LHAIVIKMGFLNYTF 207

Query: 601 HYACIVDLLGRANRLDEAVELIEGMP 626
               ++ L G+   LD  ++L + MP
Sbjct: 208 VSNALMGLYGKCGYLDSVLQLFDEMP 233


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/641 (36%), Positives = 359/641 (56%), Gaps = 23/641 (3%)

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD-GVSLVNALSACASLGTWSRGKQCGM 264
           SW   +   A  G     + LF +M   V  +     SL  AL +CA LG  +       
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 265 MEEAKKVF-ERMKVKDVVSWNAMVTGY---------SRIGSFEDA-FALFKKMRQENVKL 313
           +      F +R     +++    + G+         S  G  E A +   +K+  E ++ 
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + V+W+ +I G A+     EAL + R+M   G  P+  TL ++L   A    +  G   H
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVH 193

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            Y IK          +D+ V ++LIDMYA C  +D +  +FD+ +  + D   W  M+  
Sbjct: 194 GYAIKNGFD------NDVFVGSSLIDMYANCTQMDYSMKVFDSFS--DCDAVLWNSMLAG 245

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+QNG   +AL +F +M Q    V+P   T S  + A   L+ LR G+Q+HAY++R ++ 
Sbjct: 246 YAQNGSVEEALGIFRRMLQAG--VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN 303

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             I F+++ LIDMY + G++D AR VF+ ++  ++VSWT+++ GY +HG   +A   F++
Sbjct: 304 DNI-FISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFER 362

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M    + P+ +TFL +L ACSH+G+VD G KYF+SMS ++G     EH A + D LGRA 
Sbjct: 363 MELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAG 422

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            LDEA   I  M ++PT  +W  LL  CR+H N  L E  A ++ ELE +  GS+ +LSN
Sbjct: 423 DLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSN 482

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +Y+ +GRW + A++R  M+  G+KK P CSW++ K     F   D++HP   +I + L  
Sbjct: 483 MYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNV 542

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
             +++   GYVP     L D+++E+K ++L  HSEKLA+ +GI++T PGT IR+ KNLR+
Sbjct: 543 YSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRV 602

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH A  FIS I+  EI++RD NRFH FK+G+C+C  +W
Sbjct: 603 CVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 206/491 (41%), Gaps = 104/491 (21%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY---TFPFVLKACGELPSSRCGSSVHA 159
           W   IR A       +A  LFLQM R    P      + P  LK+C  L      +S+HA
Sbjct: 15  WAYQIRMAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 160 VICSSGFDSNVFVCNALMAMYAR------------------CDTLSYA--RQLFDEMFQP 199
           +   SG  ++ F  NAL+ +  +                   ++ +Y   R++FDEM + 
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D VSWNT++   A+    +  L +   M  D     D  +L   L   A      RG
Sbjct: 134 ---DAVSWNTLILGCAEHKRHQEALSMVREMWRD-GFMPDTFTLSTVLPIFAECADIKRG 189

Query: 260 --------------------------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
                                       C  M+ + KVF+     D V WN+M+ GY++ 
Sbjct: 190 MVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQN 249

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           GS E+A  +F++M Q  V+                                   P  VT 
Sbjct: 250 GSVEEALGIFRRMLQAGVR-----------------------------------PVPVTF 274

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            SL+    ++  L LGK+ H Y I+   +      D++ + ++LIDMY KC +VD+AR +
Sbjct: 275 SSLIPAFGNLSLLRLGKQLHAYLIRARFN------DNIFISSSLIDMYCKCGNVDIARRV 328

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ I  ++ D+ +WT MI  Y+ +G   +A  LF +M   +  VKPN  T    L AC+ 
Sbjct: 329 FNGI--QSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGN--VKPNHITFLAVLTACSH 384

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANC--LIDMYSRSGDIDTARVVFDNLKQRNVVS- 530
              +  G + +   + NQY   +P + +C  L D   R+GD+D A      +K +   S 
Sbjct: 385 AGLVDNGWK-YFNSMSNQYG-FVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSV 442

Query: 531 WTSLMTGYGMH 541
           W++L+    +H
Sbjct: 443 WSTLLRACRVH 453



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 165/376 (43%), Gaps = 41/376 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN LI      +    A  +  +M R G+ PD +T   VL    E    + G  VH    
Sbjct: 138 WNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAI 197

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +GFD++VFV ++L+ MYA C  + Y+ ++FD       CD V WN+++A YAQ+G  E 
Sbjct: 198 KNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSD---CDAVLWNSMLAGYAQNGSVEE 254

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
            L +F RM     V+   V+  + + A  +L     GKQ                     
Sbjct: 255 ALGIFRRML-QAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLI 313

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                CG ++ A++VF  ++  D+VSW AM+ GY+  G   +AF LF++M   NVK N +
Sbjct: 314 DMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHI 373

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL--LGKETHC 374
           T+ AV+   +  G        F  M       N    V  L  CA++   L   G     
Sbjct: 374 TFLAVLTACSHAGLVDNGWKYFNSMS------NQYGFVPSLEHCAALADTLGRAGDLDEA 427

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
           Y     + +  +      ++ A         + +VA+ +F+ + PK+  + +  ++   Y
Sbjct: 428 YNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFE-LEPKS--MGSHVILSNMY 484

Query: 435 SQNGGANDALALFPQM 450
           S +G  N+A  L   M
Sbjct: 485 SASGRWNEAAQLRKSM 500


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/550 (40%), Positives = 325/550 (59%), Gaps = 23/550 (4%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y +    EDA  +  +M ++NV    V+W+A+I+ Y+Q GH  EAL VF +M     +PN
Sbjct: 97  YGKCDCLEDARKVLDEMPEKNV----VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPN 152

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             T  ++L+ C     L LGK+ H   +K       ++   + V ++L+DMYAK   +  
Sbjct: 153 EFTFATVLTSCIRASGLGLGKQIHGLIVK------WNYDSHIFVGSSLLDMYAKAGQIKE 206

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +F+ +    RDV + T +I  Y+Q G   +AL +F ++  +   + PN  T +  L 
Sbjct: 207 AREIFECLP--ERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG--MSPNYVTYASLLT 262

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVA---NCLIDMYSRSGDIDTARVVFDNLKQR 526
           A + LA L  G+Q H +VLR +    +PF A   N LIDMYS+ G++  AR +FDN+ +R
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRE----LPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKY 585
             +SW +++ GY  HGLG +    F  MR E  + PD VT L +L  CSH  M D GL  
Sbjct: 319 TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNI 378

Query: 586 FDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           FD M + E+G     EHY CIVD+LGRA R+DEA E I+ MP +PT  +  +LL  CR+H
Sbjct: 379 FDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVH 438

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            +V++GE    RL+E+E E  G+Y +LSN+YA+AGRW DV  +R++M    V K PG SW
Sbjct: 439 LSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSW 498

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           +Q ++    F   DRTHP+ +++   +  +  ++K  GYVP  S  L+DVD+E+K  +L 
Sbjct: 499 IQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLL 558

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLAL +G++ T  G PIR+ KNLRIC DCH+     S +   E+ LRD NRFH   
Sbjct: 559 GHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIV 618

Query: 825 EGSCTCKGYW 834
           +G C+C  YW
Sbjct: 619 DGICSCGDYW 628



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 193/426 (45%), Gaps = 85/426 (19%)

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
            L+M   G     + +  +L AC +  + R G  VHA +  + +    ++   L+  Y +
Sbjct: 40  LLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGK 99

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-- 240
           CD L  AR++ DEM +    ++VSW  +++ Y+Q+G +   L +FA M     ++ DG  
Sbjct: 100 CDCLEDARKVLDEMPEK---NVVSWTAMISRYSQTGHSSEALTVFAEM-----MRSDGKP 151

Query: 241 --VSLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVF 272
              +    L++C        GKQ                           G ++EA+++F
Sbjct: 152 NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           E +  +DVVS  A++ GY+++G  E+A  +F ++  E +  N VT++             
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYA------------- 258

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
                                 SLL+  + +  L  GK+ HC+ ++R L      P   +
Sbjct: 259 ----------------------SLLTALSGLALLDHGKQAHCHVLRREL------PFYAV 290

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           + N+LIDMY+KC ++  AR +FD +    R   +W  M+  YS++G   + L LF ++ +
Sbjct: 291 LQNSLIDMYSKCGNLSYARRLFDNMP--ERTAISWNAMLVGYSKHGLGREVLELF-RLMR 347

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRS 510
            +K VKP+A TL   L  C+       G  I   ++  +Y    P   +  C++DM  R+
Sbjct: 348 DEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGT-KPGTEHYGCIVDMLGRA 406

Query: 511 GDIDTA 516
           G ID A
Sbjct: 407 GRIDEA 412



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 31/270 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I R  +      A  +F +MMR    P+E+TF  VL +C        G  +H
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIH 176

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +I    +DS++FV ++L+ MYA+   +  AR++F+ + +    D+VS   I+A YAQ G
Sbjct: 177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPER---DVVSCTAIIAGYAQLG 233

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             E  L +F R+  +  +  + V+  + L+A + L     GKQ                 
Sbjct: 234 LDEEALEMFHRLHSE-GMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ 292

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-V 311
                    CG +  A+++F+ M  +  +SWNAM+ GYS+ G   +   LF+ MR E  V
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRV 352

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           K + VT  AV++G +        L++F  M
Sbjct: 353 KPDAVTLLAVLSGCSHGRMEDTGLNIFDGM 382



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 6/196 (3%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L AC    ALR G+++HA++++ +Y +   ++   L+  Y +   ++ AR V D + ++N
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRY-LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VVSWT++++ Y   G   +A   F +M +    P+  TF  +L +C  +  +  G K   
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG-KQIH 176

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            +  ++   +     + ++D+  +A ++ EA E+ E +P E   +   A++ G   +A +
Sbjct: 177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP-ERDVVSCTAIIAG---YAQL 232

Query: 648 ELGELAANRLLELESE 663
            L E A      L SE
Sbjct: 233 GLDEEALEMFHRLHSE 248


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/763 (32%), Positives = 394/763 (51%), Gaps = 42/763 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  + A+I    +      A  +F +M   G   +E++F  +L  C  L     G  +H
Sbjct: 153 NVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLH 212

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A++   GF +  FV NALM +Y +C  L    QLFDEM      DI SWNT++++  +  
Sbjct: 213 AIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHR---DIASWNTVISSVVKEM 269

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             E    LF  M      + D  +L   L A   L +    +                  
Sbjct: 270 MYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVIN 329

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG ++    +FE+M+V+DV++W  M+T Y   G  + A  +F KM       
Sbjct: 330 ALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPAR---- 385

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N ++++A+++G+ Q G G +AL  F +M   G+E    TL  +L+ C  +    + K+ H
Sbjct: 386 NSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIH 445

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            + +K     +        +  AL+DM  +C  +  A+ MF   +        WT MI  
Sbjct: 446 GFILKFGFGSNAC------IEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICG 499

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y++N    +A++LF Q   +  +V     + +  L  C  LA    G+QIH + L++ + 
Sbjct: 500 YARNAQPEEAISLFCQSQLEGAMVVDKVAS-TAVLGVCGTLAFHEMGKQIHCHALKSGFL 558

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  V N +I MYS+  ++D A  VF+ +   ++VSW  L+ G+ +H  GD+A   + +
Sbjct: 559 SDLG-VGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSK 617

Query: 554 MRKEGLAPDGVTFLVLLYACSH--SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           M K G+ PD VTF++++ A  H  S +VD   + F SM   + I    EHY  +V +LG 
Sbjct: 618 MEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGY 677

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
              L+EA E+I  MP+EP   +W ALL+ CRIH+N  +G+ AA  LL ++     +Y L+
Sbjct: 678 WGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILV 737

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+Y+  GRW     +R  M+  G +K PG SW+  +    +F+  D++HPQ++ I+  L
Sbjct: 738 SNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGL 797

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L+      GYVP TSF LH+V++ +K D LF HS K+A  YG+L T PG PIRI KN+
Sbjct: 798 ELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNI 857

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +CGDCH+ + ++S++   EI LRD++  H F  G C+CK YW
Sbjct: 858 LLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 900



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 50/332 (15%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + GM+  A KVF  +   +VVS+ AM++G+++      A  +F +MR   ++LN      
Sbjct: 135 KLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELN------ 188

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
                                +F        + V++L+ C  +  L LG + H   IK  
Sbjct: 189 ---------------------EF--------SFVAILTVCIRLLDLELGCQLHAIVIKM- 218

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                   +   V NAL+ +Y KC  +D    +FD +   +RD+A+W  +I S  +    
Sbjct: 219 -----GFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMP--HRDIASWNTVISSVVKEMMY 271

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A  LF  M + D   + + FTLS  L+A   LA++  GR+IHA+V++  +E  I  V 
Sbjct: 272 ERAFELFRDMRRIDGF-RIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFESNIS-VI 328

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N LI  Y++ G I     +F+ ++ R+V++WT ++T Y   GL D A   FD+M     A
Sbjct: 329 NALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMP----A 384

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            + +++  +L     +G   + L +F  M +E
Sbjct: 385 RNSISYNAILSGFCQNGEGSKALAFFCRMVEE 416



 Score = 47.0 bits (110), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           + +HA + +   ++    +AN LI  Y + G +  A  VF  L   NVVS+T++++G+  
Sbjct: 110 KAVHASIFKLAEDI---HLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAK 166

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
                +A   F +MR  G+  +  +F+ +L  C     ++ G +   ++  + G      
Sbjct: 167 SNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ-LHAIVIKMGFLNYTF 225

Query: 601 HYACIVDLLGRANRLDEAVELIEGMP 626
               ++ L G+   LD  ++L + MP
Sbjct: 226 VSNALMGLYGKCGYLDSVLQLFDEMP 251


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 346/578 (59%), Gaps = 20/578 (3%)

Query: 261 QCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           Q   +E+A+KV   +       D    N+++  Y + GS  +A  +F +MR++++    V
Sbjct: 63  QSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDM----V 118

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +W+++IAGYAQ     EA+ +   M     +PN  T  SLL    +     +G++ H   
Sbjct: 119 SWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHA-- 176

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
               L+V     +D+ V +AL+DMYA+C  +D+A  +FD +  KN    +W  +I  +++
Sbjct: 177 ----LAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNG--VSWNALISGFAR 230

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G    AL  F +M +     +   FT S    + ARL AL  G+ +HA++++++ +M  
Sbjct: 231 KGDGETALMTFAEMLRNG--FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM-T 287

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
            F  N L+DMY++SG +  AR VFD +  +++V+W +++T +  +GLG +A   F++MRK
Sbjct: 288 AFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRK 347

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            G+  + VTFL +L ACSH G+V +G +YF+ M KE+ +    +H+  +V LLGRA  L+
Sbjct: 348 SGIYLNQVTFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLN 406

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
            A+  I  MP+EPT  +W ALL  CR+H N ++G+ AA+ + EL+ +  G   LL NIYA
Sbjct: 407 FALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYA 466

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
           + G+W   AR+R +MK TGVKK P CSWV+ +     F   D THP++++IY++   + +
Sbjct: 467 STGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISK 526

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
           +I+  GYVP   + L  VDD+E+   L  HSEKLALA+ ++    G  IRI KN+RICGD
Sbjct: 527 KIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGD 586

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CHSA  +IS +   EI++RD+NRFHHF  GSC+C  YW
Sbjct: 587 CHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 203/470 (43%), Gaps = 87/470 (18%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P    +   + AC +  +      VHA + SS F  + F+ N+L+ +Y +C ++  AR++
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDEM +    D+VSW +++A YAQ+   E  + L   M    + + +G +  + L A  +
Sbjct: 109 FDEMRRK---DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKG-RFKPNGFTFASLLKAAGA 164

Query: 253 LGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
                 G+Q                          CGMM+ A  VF+++  K+ VSWNA+
Sbjct: 165 HADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNAL 224

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           ++G++R G  E A   F +M +   +    T+S+V                         
Sbjct: 225 ISGFARKGDGETALMTFAEMLRNGFEATHFTYSSV------------------------- 259

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
                      S  A +GAL  GK  H + IK    +           N L+DMYAK  S
Sbjct: 260 ----------FSSIARLGALEQGKWVHAHMIKSRQKMTA------FAGNTLLDMYAKSGS 303

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +  AR +FD +   ++D+ TW  M+ +++Q G   +A++ F +M +    +  N  T  C
Sbjct: 304 MIDARKVFDRV--DDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSG--IYLNQVTFLC 359

Query: 467 ALMACARLAALRFGRQ----IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFD 521
            L AC+    ++ G++    +  Y L  + +  +  VA     +  R+G ++ A V +F 
Sbjct: 360 ILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVA-----LLGRAGLLNFALVFIFK 414

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
              +     W +L+    MH       +A D + +  L PD     VLLY
Sbjct: 415 MPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFE--LDPDDSGPPVLLY 462



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 33/284 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +LI    +  +P+ A  L   M++  + P+ +TF  +LKA G    S  G  +HA+  
Sbjct: 120 WTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAV 179

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +  +V+V +AL+ MYARC  +  A  +FD++      + VSWN +++ +A+ GD E 
Sbjct: 180 KCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSK---NGVSWNALISGFARKGDGET 236

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            LM FA M  +   +    +  +  S+ A LG   +GK                      
Sbjct: 237 ALMTFAEMLRN-GFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLL 295

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G M +A+KVF+R+  KD+V+WN M+T +++ G  ++A + F++MR+  + LN V
Sbjct: 296 DMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQV 355

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLL 357
           T+  ++   +  G   E    F  M+   LEP +   VT+V+LL
Sbjct: 356 TFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALL 399


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/669 (36%), Positives = 361/669 (53%), Gaps = 113/669 (16%)

Query: 174 NALMAMYARCD---TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           N L+A YA+      L+ AR+LFD +  P   D VS+NT+++ +            FA  
Sbjct: 47  NCLLAGYAKASGLIRLADARRLFDSIPHP---DTVSYNTLLSCH------------FA-- 89

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
                                          CG ++ A++VF  M VKDV SWN MV+G 
Sbjct: 90  -------------------------------CGDIDGARRVFSTMPVKDVTSWNTMVSGL 118

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           S+ G+ E+A A+F+ M   N     V+W+A++A  A  G    A D+FR           
Sbjct: 119 SKNGASEEAAAMFRIMPVRNA----VSWNAMVAALACSGDMGAAEDLFR----------- 163

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
                                            +     D ++  A++  Y    +V  A
Sbjct: 164 ---------------------------------NAPEKTDAILWTAMVSGYMDTGNVQKA 190

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
              F A+  +N  + +W  ++  Y +N  A+DAL +F  M + D +V+PNA TLS  L+ 
Sbjct: 191 MEFFGAMPVRN--LVSWNAVVAGYVKNSRADDALRVFKTMVE-DSIVQPNASTLSSVLLG 247

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPF-----VANCLIDMYSRSGDIDTARVVFDNLKQ 525
           C+ L+AL FGRQ+H      Q+ M +P      V   L+ MY + GD++ A  VFD +  
Sbjct: 248 CSNLSALGFGRQVH------QWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMST 301

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           +++V+W ++++GY  HG G +A   F++M+ EG+ PD +T L +L AC H+G+ D G++ 
Sbjct: 302 KDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQC 361

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F++M + + I  + +HY+C+VDLL RA  L+ AV +I  MP EP P  +  LL  CR++ 
Sbjct: 362 FETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYK 421

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N+E  E AA +L+E + +  G+Y  L+NIYA A +W DV+R+R  MK   V K PG SW+
Sbjct: 422 NLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWM 481

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + K     F   DR HPQ   I++ L  L   +KAMGYVP   FALHDV+D  K  +L  
Sbjct: 482 EIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMR 541

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLA+A+G+++T+PG  +RI KNLRICGDCH+A   IS I + EIILRD+ RFHHF+ 
Sbjct: 542 HSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRG 601

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 602 GHCSCGDYW 610



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 30/210 (14%)

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           ++  +  A+++ Y     +  A + F  M    + ++VSWN +VA Y ++  A+  L +F
Sbjct: 169 TDAILWTAMVSGYMDTGNVQKAMEFFGAM---PVRNLVSWNAVVAGYVKNSRADDALRVF 225

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------------------- 261
             M  D  VQ +  +L + L  C++L     G+Q                          
Sbjct: 226 KTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCK 285

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           CG + +A KVF+ M  KD+V+WNAM++GY++ G    A  LF+KM+ E V  + +T  AV
Sbjct: 286 CGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAV 345

Query: 322 IAGYAQRGHGHEALDVFRQMQFC-GLEPNV 350
           +      G     +  F  MQ    +EP +
Sbjct: 346 LTACIHTGLCDFGIQCFETMQEAYKIEPQI 375



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 11/209 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA++   V+    D+A R+F  M+      P+  T   VL  C  L +   G  VH   
Sbjct: 205 WNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWC 264

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                  NV V  +L++MY +C  L+ A ++FDEM      DIV+WN +++ YAQ G   
Sbjct: 265 MKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK---DIVAWNAMISGYAQHGGGM 321

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDV 280
             + LF +M  D  V  D ++L+  L+AC   G    G QC   M+EA K+  ++     
Sbjct: 322 QAIKLFEKMK-DEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQID---- 376

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
             ++ MV    R G  E A  +   M  E
Sbjct: 377 -HYSCMVDLLCRAGLLERAVNMIHSMPFE 404


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/742 (36%), Positives = 406/742 (54%), Gaps = 42/742 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSV 157
           +  W A+     R      +  L  +M+  G  P+ YT      AC   EL     G  +
Sbjct: 116 IVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVL 175

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
             V     + ++V V +AL+ M AR   L+ AR++FD + +     +V W  +++ Y Q 
Sbjct: 176 GLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEK---TVVVWTLLISRYVQG 232

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
             AE  + LF     D   + D  ++ + +SAC  LG+   G Q         +  RM +
Sbjct: 233 ECAEEAVELFLDFLED-GFEPDRYTMSSMISACTELGSVRLGLQL------HSLALRMGL 285

Query: 278 -KDVVSWNAMVTGY--SRIGSFED-AFALFKKMRQENVKLNVVTWSAVIAGYAQRG-HGH 332
             D      +V  Y  S IG   D A  +F++M     K +V++W+A+I+GY Q G   +
Sbjct: 286 ASDACVSCGLVDMYAKSNIGQAMDYANKVFERM----PKNDVISWTALISGYVQSGVQEN 341

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           + + +F +M    ++PN +T  S+L  CAS+     G++ H + IK       +      
Sbjct: 342 KVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIK------SNQASAHT 395

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V NAL+ MYA+   ++ AR +F+ +  ++        MI   ++         L  ++ +
Sbjct: 396 VGNALVSMYAESGCMEEARRVFNQLYERS--------MIPCITEGRD----FPLDHRIVR 443

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
            D  V  ++ T +  + A A +  L  G+Q+HA  L+  +     FV+N L+ MYSR G 
Sbjct: 444 MD--VGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGS-DRFVSNSLVSMYSRCGY 500

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ A   F+ LK RNV+SWTS+++G   HG  ++A   F  M   G+ P+ VT++ +L A
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSH G+V +G +YF SM ++ G+  R EHYAC+VDLL R+  + EA+E I  MP++   +
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADAL 620

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W  LL  CR H N+E+GE+ A  ++ELE      Y LLSN+YA+AG W +VARIRS M+
Sbjct: 621 VWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMR 680

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
              + K  G SW++ +  T  F  GD +HP++Q IY  L  LV++IK MGYVP TS  LH
Sbjct: 681 DNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLH 740

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           D+ DE K   L +HSEK+A+A+G++TT+   PIRI KNLR+C DCHSAI ++S     EI
Sbjct: 741 DMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREI 800

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           ILRDSNRFH  K+G C+C  YW
Sbjct: 801 ILRDSNRFHRMKDGECSCGEYW 822



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 242/505 (47%), Gaps = 44/505 (8%)

Query: 152 RCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
           R G ++H  +      D +  V N+L+ +Y+RC  ++ AR +FD M   G+ DIVSW  +
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGM--RGLRDIVSWTAM 122

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL-GTWSRGKQCGMMEEAK 269
            +  A++G   G L+L   M        +   L NA + CA+    +     C +     
Sbjct: 123 ASCLARNGAERGSLLLIGEML-------ESGLLPNAYTLCAAAHACFPHELYCLVGGVVL 175

Query: 270 KVFERMKV--KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
            +  +M +   DV   +A++   +R G    A  +F  +    ++  VV W+ +I+ Y Q
Sbjct: 176 GLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGL----IEKTVVVWTLLISRYVQ 231

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                EA+++F      G EP+  T+ S++S C  +G++ LG + H   ++  L+ D   
Sbjct: 232 GECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDAC- 290

Query: 388 PDDLMVINALIDMYAKC---KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GANDA 443
                V   L+DMYAK    +++D A  +F+ + PKN DV +WT +I  Y Q+G   N  
Sbjct: 291 -----VSCGLVDMYAKSNIGQAMDYANKVFERM-PKN-DVISWTALISGYVQSGVQENKV 343

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           +ALF +M  +   +KPN  T S  L +CA ++    GRQ+HA+V+++  +     V N L
Sbjct: 344 MALFGEMLNES--IKPNHITYSSILKSCASISDHDSGRQVHAHVIKSN-QASAHTVGNAL 400

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           + MY+ SG ++ AR VF+ L +R+++   +    + +            ++ +  +    
Sbjct: 401 VSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLD----------HRIVRMDVGISS 450

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
            TF  L+ A +  GM+ +G +   +MS + G  +       +V +  R   L++A     
Sbjct: 451 STFASLISAAASVGMLTKG-QQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFN 509

Query: 624 GMPMEPTPIIWVALLNGCRIHANVE 648
            +  +   I W ++++G   H   E
Sbjct: 510 ELK-DRNVISWTSMISGLAKHGYAE 533



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 215/446 (48%), Gaps = 46/446 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  LI R V+    + A  LFL  +  G+ PD YT   ++ AC EL S R G  +H
Sbjct: 218 TVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLH 277

Query: 159 AVICSSGFDSNVFVCNALMAMYARCD---TLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           ++    G  S+  V   L+ MYA+ +    + YA ++F+ M +    D++SW  +++ Y 
Sbjct: 278 SLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKN---DVISWTALISGYV 334

Query: 216 QSGDAEGGLM-LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           QSG  E  +M LF  M  +  ++ + ++  + L +CAS+     G+Q         V + 
Sbjct: 335 QSGVQENKVMALFGEMLNE-SIKPNHITYSSILKSCASISDHDSGRQV-----HAHVIKS 388

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            +       NA+V+ Y+  G  E+A  +F ++ + ++ +  +T               E 
Sbjct: 389 NQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSM-IPCIT---------------EG 432

Query: 335 LDVFRQMQFCGLEPNV--VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
            D     +   ++  +   T  SL+S  ASVG L  G++ H  ++K           D  
Sbjct: 433 RDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLK------AGFGSDRF 486

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V N+L+ MY++C  ++ A   F+ +  K+R+V +WT MI   +++G A  AL+LF  M  
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNEL--KDRNVISWTSMISGLAKHGYAERALSLFHDMIL 544

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRS 510
               VKPN  T    L AC+ +  +R G++    + R+    LIP + +  C++D+ +RS
Sbjct: 545 TG--VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDH--GLIPRMEHYACMVDLLARS 600

Query: 511 GDIDTARVVFDNLKQR-NVVSWTSLM 535
           G +  A    + +  + + + W +L+
Sbjct: 601 GIVKEALEFINEMPLKADALVWKTLL 626



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 28/288 (9%)

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
           G L LG+  H    +R+L  D     D +V N+L+ +Y++C +V  AR +FD +    RD
Sbjct: 62  GDLRLGRALH----RRLLRGD-LLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGL-RD 115

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
           + +WT M    ++NG    +L L  +M +   L  PNA+TL  A  AC       F  ++
Sbjct: 116 IVSWTAMASCLARNGAERGSLLLIGEMLESGLL--PNAYTLCAAAHAC-------FPHEL 166

Query: 484 HAYVLRNQYEMLIPF--------VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +  V      ++           V + LIDM +R+GD+ +AR VFD L ++ VV WT L+
Sbjct: 167 YCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLI 226

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           + Y      ++A   F    ++G  PD  T   ++ AC+  G V  GL+   S++   G+
Sbjct: 227 SRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGL 285

Query: 596 SARAEHYACIVDLLGRAN---RLDEAVELIEGMPMEPTPIIWVALLNG 640
           ++ A     +VD+  ++N    +D A ++ E MP     I W AL++G
Sbjct: 286 ASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDV-ISWTALISG 332


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 284/837 (33%), Positives = 427/837 (51%), Gaps = 120/837 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTF-PFVLKACG-ELPSSRCGSSVHAV 160
           WN++I    +     +AFR+F  M   G  P EYTF   V  AC    P  R    +   
Sbjct: 174 WNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCT 233

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I  SG  +++FV + L++ +A+  +LSYAR++F++M      + V+ N ++    +    
Sbjct: 234 IQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETR---NAVTLNGLMVGLVRQKWG 290

Query: 221 EGGLMLFARMTGDVKVQGDG-VSLVNAL---SACASLGTWSRGKQ--------------- 261
           E    LF  M   + V  +  V L+++    S    +G   +G++               
Sbjct: 291 EEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGL-KKGREVHGHVITTGLVDFMV 349

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       CG + +A++VF  M  KD VSWN+M+TG  + G F +A   +K MR+ 
Sbjct: 350 GIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRH 409

Query: 310 N-----------------------------------VKLNVVTWSAVIAGYAQRGHGHEA 334
           +                                   + LNV   +A++  YA+ G+ +E 
Sbjct: 410 DILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNEC 469

Query: 335 LDVFRQM--------------------------------QFCGLEPNVVTLVSLLSGCAS 362
             +F  M                                Q  G + N +T  S+LS  +S
Sbjct: 470 RKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSS 529

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           +    LGK+ H   +K  ++      D+    NALI  Y KC  +D    +F  +A + R
Sbjct: 530 LSFGELGKQIHGLALKNNIA------DEATTENALIACYGKCGEMDGCEKIFSRMAER-R 582

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           D  TW  MI  Y  N     AL L   M Q  +  + ++F  +  L A A +A L  G +
Sbjct: 583 DNVTWNSMISGYIHNELLAKALDLVWFMLQTGQ--RLDSFMYATVLSAFASVATLERGME 640

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +HA  +R   E  +  V + L+DMYS+ G +D A   F+ +  RN  SW S+++GY  HG
Sbjct: 641 VHACSVRACLESDV-VVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHG 699

Query: 543 LGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
            G++A   F+ M+ +G  P D VTF+ +L ACSH+G++++G K+F+SMS  +G++ R EH
Sbjct: 700 QGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEH 759

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN---VELGELAANRLL 658
           ++C+ D+LGRA  LD+  + IE MPM+P  +IW  +L  C   AN    ELG+ AA  L 
Sbjct: 760 FSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGAC-CRANGRKAELGKKAAEMLF 818

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           +LE E   +Y LL N+YA  GRW+D+ + R  MK   VKK  G SWV  K+G   F  GD
Sbjct: 819 QLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGD 878

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
           ++HP +  IY+ L  L ++++  GYVPQT FAL+D++ E K ++L  HSEKLA+A+ +  
Sbjct: 879 KSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAA 938

Query: 779 TAPGT-PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
               T PIRI KNLR+CGDCHSA  +IS I   +IILRDSNRFHHF++G+C+C  +W
Sbjct: 939 QRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 140/557 (25%), Positives = 249/557 (44%), Gaps = 52/557 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC--GSSVHAV 160
           W  ++    R      A      M++ G   ++Y F  VL+AC E+ S     G  +H +
Sbjct: 70  WACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGL 129

Query: 161 ICSSGFDSNVFVCNALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +    +  +  V N L++MY +C  ++ YA   F ++    + + VSWN+I++ Y+Q+GD
Sbjct: 130 MFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDI---EVKNSVSWNSIISVYSQAGD 186

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--- 276
                 +F+ M      Q DG           SL T +    C + E   ++ E++    
Sbjct: 187 QRSAFRIFSSM------QYDGSRPTEY--TFGSLVTTA----CSLTEPDVRLLEQIMCTI 234

Query: 277 -----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                + D+   + +V+ +++ GS   A  +F +M       N VT + ++ G  ++  G
Sbjct: 235 QKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETR----NAVTLNGLMVGLVRQKWG 290

Query: 332 HEALDVFRQMQF---CGLEPNVVTLVSL--LSGCASVGALLLGKETHCYTIKRVLSVDGS 386
            EA  +F  M        E  V+ L S    S    VG L  G+E H + I   L     
Sbjct: 291 EEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVG-LKKGREVHGHVITTGLV---- 345

Query: 387 HPDDLMV--INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
              D MV   N L++MYAKC S+  AR +F  +  K  D  +W  MI    QNG   +A+
Sbjct: 346 ---DFMVGIGNGLVNMYAKCGSIADARRVFYFMTDK--DSVSWNSMITGLDQNGCFIEAV 400

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
             +  M + D L  P +FTL  +L +CA L   + G+QIH   L+   ++ +  V+N L+
Sbjct: 401 ERYKSMRRHDIL--PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVS-VSNALM 457

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG-DKAHWAFDQMRKEGLAPDG 563
            +Y+ +G ++  R +F ++ + + VSW S++           +A   F   ++ G   + 
Sbjct: 458 TLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNR 517

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +TF  +L A S     + G K    ++ +  I+  A     ++   G+   +D   ++  
Sbjct: 518 ITFSSVLSAVSSLSFGELG-KQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFS 576

Query: 624 GMPMEPTPIIWVALLNG 640
            M      + W ++++G
Sbjct: 577 RMAERRDNVTWNSMISG 593



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 225/490 (45%), Gaps = 34/490 (6%)

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H+ +  +  D +V++CN L+  Y        AR++FDEM  P + + VSW  IV+ Y+++
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEM--P-LRNCVSWACIVSGYSRN 80

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS--RGKQC-GMMEEAKKVFER 274
           G+ +  L+    M  +  +  +  + V+ L AC  +G+     G+Q  G+M      F+ 
Sbjct: 81  GEHKEALVFLRDMVKE-GIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLM------FKL 133

Query: 275 MKVKDVVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
               D V  N +++ Y + IGS   A   F  +  +    N V+W+++I+ Y+Q G    
Sbjct: 134 SYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVK----NSVSWNSIISVYSQAGDQRS 189

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA--LLLGKETHCYTIKRVLSVDGSHPDDL 391
           A  +F  MQ+ G  P   T  SL++   S+    + L ++  C   K  L        DL
Sbjct: 190 AFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLT------DL 243

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V + L+  +AK  S+  AR +F+ +  +N  V    +M+G   Q  G  +A  LF  M 
Sbjct: 244 FVGSGLVSAFAKSGSLSYARKVFNQMETRNA-VTLNGLMVGLVRQKWG-EEATKLFMDMN 301

Query: 452 QQDKLVKPNAFTL---SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
                V P ++ +   S    + A    L+ GR++H +V+       +  + N L++MY+
Sbjct: 302 SMID-VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G I  AR VF  +  ++ VSW S++TG   +G   +A   +  MR+  + P   T + 
Sbjct: 361 KCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLIS 420

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
            L +C+       G +     S + GI         ++ L      L+E  ++   MP E
Sbjct: 421 SLSSCASLKWAKLG-QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-E 478

Query: 629 PTPIIWVALL 638
              + W +++
Sbjct: 479 HDQVSWNSII 488



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 186/426 (43%), Gaps = 41/426 (9%)

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           KDV   N ++  Y   G    A  +F +M   N     V+W+ +++GY++ G   EAL  
Sbjct: 34  KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNC----VSWACIVSGYSRNGEHKEALVF 89

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGA--LLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            R M   G+  N    VS+L  C  +G+  +L G++ H    K   +VD       +V N
Sbjct: 90  LRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA------VVSN 143

Query: 396 ALIDMYAKC-KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            LI MY KC  SV  A   F  I  KN    +W  +I  YSQ G    A  +F  M  Q 
Sbjct: 144 VLISMYWKCIGSVGYALCAFGDIEVKNS--VSWNSIISVYSQAGDQRSAFRIFSSM--QY 199

Query: 455 KLVKPNAFTLSCALMACARLAA--LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
              +P  +T    +     L    +R   QI   + ++   +   FV + L+  +++SG 
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGL-LTDLFVGSGLVSAFAKSGS 258

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDGVTFLVLLY 571
           +  AR VF+ ++ RN V+   LM G      G++A   F  M     ++P+  ++++LL 
Sbjct: 259 LSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLS 316

Query: 572 ACSHSGMVDQ-GLKYFDSMSKEFGISARAEHYACI----VDLLGRANRLDEAVELIEGMP 626
           +     + ++ GLK    +      +   +    I    V++  +   + +A  +   M 
Sbjct: 317 SFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT 376

Query: 627 MEPTPIIWVALL-----NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG-R 680
            +   + W +++     NGC I A      +  + +L       GS+TL+S++ + A  +
Sbjct: 377 -DKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILP------GSFTLISSLSSCASLK 429

Query: 681 WKDVAR 686
           W  + +
Sbjct: 430 WAKLGQ 435



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P +F  SC         A RF    H+ + +N+ +  + ++ N LI+ Y  +GD  +AR 
Sbjct: 6   PLSFVQSCV----GHRGAARF---FHSRLYKNRLDKDV-YLCNNLINAYLETGDSVSARK 57

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD +  RN VSW  +++GY  +G   +A      M KEG+  +   F+ +L AC   G 
Sbjct: 58  VFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGS 117

Query: 579 V 579
           V
Sbjct: 118 V 118


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 298/444 (67%), Gaps = 6/444 (1%)

Query: 393 VINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           V+N ++D YAK   + ++VAR +FD +    RDV +W  MI  Y+QNG + +A+ L+ +M
Sbjct: 235 VVNTMLDSYAKGGSRDLEVARKVFDTM---ERDVVSWNSMIALYAQNGMSAEAIGLYSKM 291

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                 +K NA  LS  L+ACA   A++ G++IH  V+R   E  + +V   ++DMYS+ 
Sbjct: 292 LNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENV-YVGTSIVDMYSKC 350

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G ++ A   F  +K++N++SW++++TGYGMHG G +A   F +M++ GL P+ +TF+ +L
Sbjct: 351 GRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVL 410

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            ACSH+G++D+G  ++++M +EFGI A  EHY C+VDLLGRA  LDEA  LI+ M ++P 
Sbjct: 411 AACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPD 470

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
             IW ALL+ CRIH NVEL E++  RL EL++   G Y LLSNIYA A  WKDV RIR L
Sbjct: 471 AAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLL 530

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           +K   ++K PG S  + K     F+VGD++HPQ  +IY  L  L++R++  GYVP T   
Sbjct: 531 VKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSV 590

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHD+D+EEK   L  HSEKLA+A+ ++ + P + I I KNLR+C DCH+A+ FI+ I   
Sbjct: 591 LHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITER 650

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EII+RD  RFHHFK+G C+C+ YW
Sbjct: 651 EIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 25/293 (8%)

Query: 85  PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVL 142
           PA    + ++P+P S   W+      VR  L  ++  LF  M+        DE       
Sbjct: 149 PAGRSTKSLTPTPSSSPLWHFGY---VRNNLVYHSLELFRAMIASDSASVVDEAAALVAF 205

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT--LSYARQLFDEMFQPG 200
            A   +P     +S+HA+I   GF+ N  V N ++  YA+  +  L  AR++FD M +  
Sbjct: 206 SASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-- 263

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMT---GDVKVQGDGVSLVNALSACASLGTWS 257
             D+VSWN+++A YAQ+G +   + L+++M    G +K   + V+L   L ACA  G   
Sbjct: 264 --DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKC--NAVALSAVLLACAHAGAIQ 319

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GK+        +V      ++V    ++V  YS+ G  E A   F+K++++N+    ++
Sbjct: 320 TGKRIH-----NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI----LS 370

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           WSA+I GY   G G EAL++F +M+  GL PN +T +S+L+ C+  G L  G+
Sbjct: 371 WSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 423


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/704 (35%), Positives = 385/704 (54%), Gaps = 67/704 (9%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ +  P +  A   LP       +HA I      SN  V   L++      +L YA  +
Sbjct: 39  PETHFIPLI-HASNTLPQLH---QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSI 94

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F     P   ++  +N ++   A++   EG +  F  M   + ++ D ++L   L + A+
Sbjct: 95  FRCFDHP---NLFVFNALIRGLAENSRFEGSVSHFVLML-RLSIRPDRLTLPFVLKSVAA 150

Query: 253 LGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           L     G+    G+M+   +    ++V       ++V  Y +IG       LF +  Q N
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRV-------SLVDMYVKIGELGFGLQLFDESPQRN 203

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              +++ W+ +I G  + G   +A  +F  M     E N  +                  
Sbjct: 204 KAESILLWNVLINGCCKVGDLSKAASLFEAMP----ERNAGSW----------------- 242

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
                                   N+LI+ + +   +D AR +F  +  KN  V +WT M
Sbjct: 243 ------------------------NSLINGFVRNGDLDRARELFVQMPEKN--VVSWTTM 276

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I  +SQNG    AL++F +M ++   V+PN  T+  AL+AC ++ AL+ G +IH Y+  N
Sbjct: 277 INGFSQNGDHEKALSMFWRMLEEG--VRPNDLTVVSALLACTKIGALQVGERIHNYLSSN 334

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
            ++ L   +   L+DMY++ G+I +A  VF   K +++++W+ ++ G+ +HG  D+A   
Sbjct: 335 GFQ-LNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQC 393

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M+  G+ PD V FL +L ACSHSG VDQGL +F+SM  ++ I    +HY  IVDLLG
Sbjct: 394 FVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLG 453

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA RLDEA+  I+ MP+ P  +IW AL   CR H N+E+ EL A +LL+LE +  GSY  
Sbjct: 454 RAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVF 513

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSN+YA  GRW+DV R+R+LMK+ GV+K PG S+++ +    +F  GD  H ++++I   
Sbjct: 514 LSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLK 573

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  +    K  GY+P+T++ LH++++EEK D L  HSEKLALA+G+++TAPG+ IRI KN
Sbjct: 574 LEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKN 633

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+CGDCHS + + S +   EIILRD  RFHHFK+G+C+C  YW
Sbjct: 634 LRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/536 (26%), Positives = 234/536 (43%), Gaps = 68/536 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L+    +L Q++ IH QI + NL       + LI++  S  +   ALS+  R    P ++
Sbjct: 46  LIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIF-RCFDHP-NL 103

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F +NALIR        + +   F+ M+R    PD  T PFVLK+   L     G  +H  
Sbjct: 104 FVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGG 163

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD-IVSWNTIVAAYAQSGD 219
           +   G + + FV  +L+ MY +   L +  QLFDE  Q    + I+ WN ++    + GD
Sbjct: 164 VMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGD 223

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                 LF  M    +  G   SL+N               + G ++ A+++F +M  K+
Sbjct: 224 LSKAASLFEAMPE--RNAGSWNSLINGFV------------RNGDLDRARELFVQMPEKN 269

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VVSW  M+ G+S+ G  E A ++F +M +E                              
Sbjct: 270 VVSWTTMINGFSQNGDHEKALSMFWRMLEE------------------------------ 299

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                G+ PN +T+VS L  C  +GAL +G+  H Y     LS +G   +   +  AL+D
Sbjct: 300 -----GVRPNDLTVVSALLACTKIGALQVGERIHNY-----LSSNGFQLNR-GIGTALVD 348

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAKC ++  A  +F  +  K +D+ TW+VMI  ++ +G  + AL  F +M  +   + P
Sbjct: 349 MYAKCGNIKSASRVF--VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKM--KSAGINP 404

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI-DMYSRSGDIDTARV 518
           +       L AC+    +  G       +R  Y +        LI D+  R+G +D A  
Sbjct: 405 DEVIFLAILTACSHSGNVDQGLNFFES-MRLDYSIEPTMKHYTLIVDLLGRAGRLDEALS 463

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYA 572
              ++    + V W +L      H   + A    +++ + E   P    FL  +YA
Sbjct: 464 FIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/558 (42%), Positives = 335/558 (60%), Gaps = 16/558 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D V    +V  Y+  G    A  LF +M  +    NV  W+ +I  YA+ G    A++++
Sbjct: 97  DAVLATRLVDLYASCGLVSVARRLFDEMPNQG---NVFLWNVLIRAYARDGPREAAIELY 153

Query: 339 RQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           R+M  CG +EP+  T   +L  CA++  L  G+E H     RV+    S   D+ V   L
Sbjct: 154 REMLACGSMEPDNFTYPPVLKACAALLDLGAGREVH----DRVMRT--SWAADVFVCAGL 207

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMYAKC  VD A  +FD+     RD   W  MI +  QNG   +ALAL   M  +   +
Sbjct: 208 IDMYAKCGCVDEAWAVFDSTTV--RDAVVWNSMIAACGQNGRPAEALALCRNMAAEG--I 263

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            P   TL  A+ A A   AL  GR++H Y  R  +        + L+DMY++SG +  AR
Sbjct: 264 APTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTS-LLDMYAKSGWVTVAR 322

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHS 576
           V+FD L  R ++SW +++ G+GMHG  D A   F +MR E  + PD +TF+ +L AC+H 
Sbjct: 323 VLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHG 382

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +  + FD M   + I    +HY C+VD+LG + R  EA ++I+GM ++P   IW A
Sbjct: 383 GMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGA 442

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LLNGC+IH NVEL ELA ++L+ELE E  G+Y LLSNIYA +G+W++ AR+R LM + G+
Sbjct: 443 LLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGL 502

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK   CSW++ K  +  F VGD +HP+S +IYE L  L   I   GYVP T+   H+V+D
Sbjct: 503 KKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVED 562

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK +++  HSE+LA+A+G+++T PGT + +TKNLR+C DCH  I  IS I   EII+RD
Sbjct: 563 DEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRD 622

Query: 817 SNRFHHFKEGSCTCKGYW 834
            NR+HHF  G C+CK +W
Sbjct: 623 VNRYHHFVNGECSCKDHW 640



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 158/332 (47%), Gaps = 38/332 (11%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +LR C   +++     +H +++V  L    V  + L+  Y S    S A  L   + P+ 
Sbjct: 69  ILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM-PNQ 127

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSS 156
            +VF WN LIR   R    + A  L+ +M+  G   PD +T+P VLKAC  L     G  
Sbjct: 128 GNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGRE 187

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VH  +  + + ++VFVC  L+ MYA+C  +  A  +FD      + D V WN+++AA  Q
Sbjct: 188 VHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDST---TVRDAVVWNSMIAACGQ 244

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
           +G     L L   M  +  +    V+LV+A+SA A  G   RG++               
Sbjct: 245 NGRPAEALALCRNMAAE-GIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDK 303

Query: 262 -----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE- 309
                       G +  A+ +F+++  ++++SWNAM+ G+   G  + A  LF++MR E 
Sbjct: 304 LKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEA 363

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            V  + +T+  V++     G   EA +VF  M
Sbjct: 364 QVMPDHITFVGVLSACNHGGMVQEAKEVFDLM 395



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL-KQR 526
           L +C    A+R GRQ+HA +L +    L   +A  L+D+Y+  G +  AR +FD +  Q 
Sbjct: 70  LRSCVLSRAVRPGRQLHARLLVSGLG-LDAVLATRLVDLYASCGLVSVARRLFDEMPNQG 128

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKY 585
           NV  W  L+  Y   G  + A   + +M   G + PD  T+  +L AC+    +  G + 
Sbjct: 129 NVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREV 188

Query: 586 FDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
            D + +    S  A+ + C  ++D+  +   +DEA  + +   +    ++W +++  C
Sbjct: 189 HDRVMR---TSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDA-VVWNSMIAAC 242


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/550 (41%), Positives = 327/550 (59%), Gaps = 15/550 (2%)

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           +++T Y+R G    A  +F +M   +     V+W+A+I  Y   G   EA+ V R     
Sbjct: 158 SLLTLYARCGLLHRAQRVFDEMPHPST----VSWTALITAYMDAGDLREAVHVARNAFAN 213

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G+ P+  T V +L+ CA V  L  G+     T+ R    +G     + V  A +D+Y KC
Sbjct: 214 GMRPDSFTAVRVLTACARVADLATGE-----TVWRAAEQEGI-AQSVFVATAAVDLYVKC 267

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             +  AR +FD +  +++D   W  M+G Y+ NG   +AL LF  M  Q + V+P+ + +
Sbjct: 268 GEMAKAREVFDKM--RDKDAVAWGAMVGGYASNGHPREALDLFLAM--QAEGVRPDCYAV 323

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           + AL AC RL AL  GRQ    V  +++ +  P +   LIDMY++ G    A VVF  ++
Sbjct: 324 AGALSACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTAEAWVVFQQMR 382

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +++++ W +++ G GM G    A     QM K G+  +  TF+ LL +C+H+G++  G +
Sbjct: 383 KKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 442

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YF +M+K + IS R EHY CIVDLL RA  L EA +LI+ MPM    +I  ALL GC+IH
Sbjct: 443 YFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIH 502

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N EL E    +L+ LE    G+Y +LSNIY+N GRW+D A++R  MK  GV+K P CSW
Sbjct: 503 RNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSW 562

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           V+ +     F VGD++HP S +IY+ L  L   +K MGY P T   + DV+DEEK   L 
Sbjct: 563 VEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLV 622

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLA+A+ +L T PG  IR+TKNLR+C DCH+AI  IS I + EII+RD+NRFH F+
Sbjct: 623 HHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFR 682

Query: 825 EGSCTCKGYW 834
           +GSC+C  YW
Sbjct: 683 DGSCSCNDYW 692



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 188/462 (40%), Gaps = 49/462 (10%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNA 82
           ++L  +   P      + L+    L       +Q+  ++L   +H  P H++ + ++  A
Sbjct: 106 LRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNP-HVLTSLLTLYA 164

Query: 83  PSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
               L   QR+    P P +V W  ALI   +       A  +       G  PD +T  
Sbjct: 165 RCGLLHRAQRVFDEMPHPSTVSW-TALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 223

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
            VL AC  +     G +V       G   +VFV  A + +Y +C  ++ AR++FD+M   
Sbjct: 224 RVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDK 283

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D V+W  +V  YA +G     L LF  M  +  V+ D  ++  ALSAC  LG    G
Sbjct: 284 ---DAVAWGAMVGGYASNGHPREALDLFLAMQAE-GVRPDCYAVAGALSACTRLGALDLG 339

Query: 260 KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           +Q                          CG   EA  VF++M+ KD++ WNAM+ G    
Sbjct: 340 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 399

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVT 352
           G  + AF L  +M +  VKLN  T+  ++      G   +    F  M +   + P +  
Sbjct: 400 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 459

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR- 411
              ++   +  G L   +E H       L  D   P + +++ AL+      ++ ++A  
Sbjct: 460 YGCIVDLLSRAGLL---QEAH------QLIDDMPMPANAVILGALLGGCKIHRNAELAEH 510

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           V+   I  +  +   + ++   YS  G   DA  L   M ++
Sbjct: 511 VLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEK 552



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 6/187 (3%)

Query: 456 LVKPNAFTLSCALMACARLA-ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           L  P+  T   AL + +RL   LR G Q+HA  L+       P V   L+ +Y+R G + 
Sbjct: 112 LPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHT-NPHVLTSLLTLYARCGLLH 170

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHG-LGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            A+ VFD +   + VSWT+L+T Y   G L +  H A +     G+ PD  T + +L AC
Sbjct: 171 RAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAF-ANGMRPDSFTAVRVLTAC 229

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +    +  G   + +  +E GI+         VDL  +   + +A E+ + M  +   + 
Sbjct: 230 ARVADLATGETVWRAAEQE-GIAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RDKDAVA 287

Query: 634 WVALLNG 640
           W A++ G
Sbjct: 288 WGAMVGG 294


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/795 (32%), Positives = 407/795 (51%), Gaps = 27/795 (3%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP---PSHLIAAYVSHNAPSPALSLLQRISPSPFS 99
           L+R+C S+ +  L+H +I             S L+  Y+   +   A+ +  +I+    S
Sbjct: 35  LVRECNSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHK--S 92

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           +  W  LI   V       A  LF ++++ G   D   F  VL AC        G  +H 
Sbjct: 93  IVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHR 152

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               +G      V +AL++MY RC +L  A  LF  + +    D+V WN ++ A +Q+G 
Sbjct: 153 CAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERH--LDVVLWNAMITANSQNGS 210

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L +F RM   + +  D V+ V+   AC+S  +    +  G       + E     D
Sbjct: 211 PREALEIFYRML-QLGIPPDLVTFVSVFKACSSSPSLRASQVKGFH---ACLDETGLGSD 266

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           VV   A+V  Y+R G  + A   F +M + N     V+W+++IA + Q GH   A++ F 
Sbjct: 267 VVVATALVNAYARCGEIDCARKFFAEMPERNA----VSWTSMIAAFTQIGH-LLAVETFH 321

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M   G+ P   TL + L GC         ++     +   ++ +     D+ ++  L+ 
Sbjct: 322 AMLLEGVVPTRSTLFAALEGC---------EDLRVARLVEAIAQEIGVVTDVAIVTDLVM 372

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            YA+C   + A  +F A      D A  T MI  Y+Q         L+    ++   + P
Sbjct: 373 AYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERG--ISP 430

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +      AL ACA LAAL  GRQIHA V  ++       + N ++ MY + G +  AR  
Sbjct: 431 DRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDA 490

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD +  R+ +SW ++++    HG  +     F  M +EG   + + FL LL AC+H+G+V
Sbjct: 491 FDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLV 550

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
             G ++F +M+ + G+    EHY C+VDLLGR  RL +A  +++ MP+ P    W+AL+ 
Sbjct: 551 KAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMG 610

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CRI+ + E G  AA R+LEL ++   +Y  L NIY+ AGRW D A +R +M   G++K 
Sbjct: 611 ACRIYGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKI 670

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG S ++ +     F V DR+HPQS+ IY  L  ++  I+  GY   T   LHDV++E+K
Sbjct: 671 PGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQK 730

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             LL  HSEKLA+A+G+++T  G+ +R+ KNLR+C DCH+A  FIS +   EI++RD  R
Sbjct: 731 EQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRR 790

Query: 820 FHHFKEGSCTCKGYW 834
           FHHFK+G+C+C  YW
Sbjct: 791 FHHFKDGACSCGDYW 805


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/551 (39%), Positives = 333/551 (60%), Gaps = 16/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N+++  Y + G+  DA  +F  M   ++     +W+++IAGYAQ     EAL +   M  
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDM----CSWTSLIAGYAQNDMPDEALGLLPGMLR 158

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
              +PN  T  SLL    +  +  +G++ H  T+K          DD+ V +AL+DMYA+
Sbjct: 159 GRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKY------DWHDDVYVGSALLDMYAR 212

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +D+A  +FD +  KN    +W  +I  +++ G     L +F +M  Q    +   FT
Sbjct: 213 CGRMDMAIAVFDQLESKNG--VSWNALIAGFARKGDGETTLLMFAEM--QRNGFEATHFT 268

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            S    A A + AL  G+ +HA+++++  E L  FV N ++DMY++SG +  AR VFD +
Sbjct: 269 YSSVFSAIAGIGALEQGKWVHAHMIKSG-ERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            +++VV+W S++T +  +GLG +A   F++MRK G+  + +TFL +L ACSH G+V +G 
Sbjct: 328 DKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGK 387

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YFD M KE+ +    +HY  +VDLLGRA  L++A+  I  MPM+PT  +W ALL  CR+
Sbjct: 388 QYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N ++G+ AA+ + EL+ +  G   LL NIYA+ G+W   AR+R +MK TGVKK P CS
Sbjct: 447 HKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACS 506

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           WV+ +     F   D THP+S++IY+    +  +I+  GYVP T + L  VD++E+   L
Sbjct: 507 WVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKL 566

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEK+ALA+ ++    G  IRI KN+RICGDCHSA  +IS +   EI++RD+NRFHHF
Sbjct: 567 QYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHF 626

Query: 824 KEGSCTCKGYW 834
             GSC+C  YW
Sbjct: 627 SSGSCSCGDYW 637



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 170/382 (44%), Gaps = 64/382 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +LI    +  +PD A  L   M+R  + P+ +TF  +LKA G   SS  G  +HA+  
Sbjct: 133 WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 192

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +  +V+V +AL+ MYARC  +  A  +FD++      + VSWN ++A +A+ GD E 
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK---NGVSWNALIAGFARKGDGET 249

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            L++FA M  +   +    +  +  SA A +G   +GK                      
Sbjct: 250 TLLMFAEMQRN-GFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G M +A+KVF+R+  KDVV+WN+M+T +++ G   +A   F++MR+  V LN +
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLLS--------------- 358
           T+ +++   +  G   E    F  M+   LEP +   VT+V LL                
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 359 ----GCASVGALLLGKETH------CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
                 A  GALL     H       +    V  +D   PDD      L ++YA     D
Sbjct: 429 PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELD---PDDTGPPVLLYNIYASTGQWD 485

Query: 409 VA---RVMFDAIAPKNRDVATW 427
            A   R M  A   K     +W
Sbjct: 486 AAARVRKMMKATGVKKEPACSW 507



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 195/457 (42%), Gaps = 77/457 (16%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           ++ AC    S     ++HA +  S F  +VF+ N+L+ +Y +C  ++ AR++FD M    
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQG-DGVSLVNALSACASLG---- 254
           +C   SW +++A YAQ+   +  L L   M  G  K  G    SL+ A  A AS G    
Sbjct: 130 MC---SWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 255 --------TWSRG-----------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                    W               +CG M+ A  VF++++ K+ VSWNA++ G++R G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            E    +F +M++                                    G E    T  S
Sbjct: 247 GETTLLMFAEMQRN-----------------------------------GFEATHFTYSS 271

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           + S  A +GAL  GK  H + IK    +         V N ++DMYAK  S+  AR +FD
Sbjct: 272 VFSAIAGIGALEQGKWVHAHMIKSGERLSA------FVGNTILDMYAKSGSMIDARKVFD 325

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  K  DV TW  M+ +++Q G   +A+  F +M +    V  N  T    L AC+   
Sbjct: 326 RVDKK--DVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG--VHLNQITFLSILTACSHGG 381

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFDNLKQRNVVSWTSL 534
            ++ G+Q    +     E  I      ++D+  R+G ++ A V +F    +     W +L
Sbjct: 382 LVKEGKQYFDMMKEYNLEPEIDHYVT-VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGAL 440

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           +    MH       +A D + +  L PD     VLLY
Sbjct: 441 LGSCRMHKNAKIGQFAADHVFE--LDPDDTGPPVLLY 475



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           + ACAR  +L   R IHA++  +Q+   + F+ N LI +Y + G +  AR VFD +  R+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSV-FLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           + SWTSL+ GY  + + D+A      M +    P+G TF  LL A   S     G +   
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG-EQIH 188

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +++ ++         + ++D+  R  R+D A+ + + +  +   + W AL+ G
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG 240


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/691 (36%), Positives = 385/691 (55%), Gaps = 31/691 (4%)

Query: 150 SSRCGSSVHAV---ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS 206
           S R G + HA    + S G     F+C  L+ +Y++ D  + A         P    +VS
Sbjct: 24  SPRLGRAAHARALRLLSPGLPP--FICAHLVNLYSKLDLPAAAASALASDPNP---TVVS 78

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL--SACASLGTWSRGKQCGM 264
           +   ++  AQ       L  FA M   V ++ +  +  +A   +ACA     + G Q   
Sbjct: 79  FTAFISGAAQHARPLAALSAFAAML-RVGLRPNDFTFPSAFKAAACAPPRCSTVGPQ--- 134

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +      F  +     VS  AM   Y + G    A  LF++M   NV    + W+AV+  
Sbjct: 135 IHALALRFGYLPGDPFVSCAAMDM-YFKTGCLGLARRLFEEMPNRNV----IAWNAVMTN 189

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
               G   E    +  ++  G  PNVV++ +  + CA    L LG++ H + +     +D
Sbjct: 190 AVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMD 249

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            S      V NA++D Y KC+    AR +FD +  + R+  +W  MI +Y+Q+G   DAL
Sbjct: 250 VS------VSNAMVDFYGKCRCAGKARAVFDGM--RVRNSVSWCSMIVAYAQHGAEEDAL 301

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
           A++  M  ++   +P  F +S  L  CA L  L FGR +HA  +R+  +  I FVA+ L+
Sbjct: 302 AVY--MGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANI-FVASALV 358

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKEGLAPDG 563
           DMY + G ++ A  VF ++ +RN+V+W +++ GY   G    A   FD M R  G +P+ 
Sbjct: 359 DMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNH 418

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +T + ++ ACS  G+   G + FD+M + FG+  R EHYAC+VDLLGRA   + A E+I+
Sbjct: 419 ITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQ 478

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            MPM P+  +W ALL  C++H   ELG +A+ +L EL+ +  G++ LLSN+ A+AGRW +
Sbjct: 479 RMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAE 538

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
              +R  MK+ G+KK PGCSW+  K     F+  D  H ++ +I  +LA L ++++A GY
Sbjct: 539 ATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGY 598

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           +P T ++L+DV++EEK   +F+HSEKLALA+G++   P  PIRITKNLRIC DCH A  F
Sbjct: 599 MPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKF 658

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +S I+  EII+RD+NRFH+FK+  C+CK YW
Sbjct: 659 VSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 208/459 (45%), Gaps = 48/459 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK--ACGELPSSRCGSS 156
           +V  + A I  A +   P  A   F  M+R G  P+++TFP   K  AC     S  G  
Sbjct: 75  TVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQ 134

Query: 157 VHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           +HA+    G+   + FV  A M MY +   L  AR+LF+EM      ++++WN ++    
Sbjct: 135 IHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNR---NVIAWNAVMTNAV 191

Query: 216 QSGDAEGGLMLFARMTGDVKVQG--DGVSLVNALSACASLGTWSRGKQ-------CGMME 266
             G     L  F    G  +  G  + VS+    +ACA     S G+Q       CG   
Sbjct: 192 IDGRP---LETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCG--- 245

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
                F+     DV   NAMV  Y +      A A+F  MR      N V+W ++I  YA
Sbjct: 246 -----FD----MDVSVSNAMVDFYGKCRCAGKARAVFDGMRVR----NSVSWCSMIVAYA 292

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q G   +AL V+   +  G EP    + S+L+ CA +  L  G+  H   ++  +     
Sbjct: 293 QHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDA--- 349

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
              ++ V +AL+DMY KC  V+ A  +F  +    R++ TW  MIG Y+  G A +ALA+
Sbjct: 350 ---NIFVASALVDMYGKCGGVEDAEQVF--LDMPERNLVTWNAMIGGYAHIGDAQNALAV 404

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLI 504
           F  M +      PN  TL   + AC+R    + G ++    +R ++  + P   +  C++
Sbjct: 405 FDAMIRSGG-TSPNHITLVNVITACSRGGLTKDGYELFD-TMRERFG-VEPRTEHYACVV 461

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHG 542
           D+  R+G  + A  +   +  R  +S W +L+    MHG
Sbjct: 462 DLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHG 500



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 127/265 (47%), Gaps = 26/265 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W ++I    +    ++A  +++     G  P ++    VL  C  L     G ++HAV  
Sbjct: 284 WCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAV 343

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S  D+N+FV +AL+ MY +C  +  A Q+F +M +    ++V+WN ++  YA  GDA+ 
Sbjct: 344 RSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPER---NLVTWNAMIGGYAHIGDAQN 400

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F  M        + ++LVN ++AC      SRG   G+ ++  ++F+ M+ +  V 
Sbjct: 401 ALAVFDAMIRSGGTSPNHITLVNVITAC------SRG---GLTKDGYELFDTMRERFGVE 451

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  +V    R G  E A+ + ++M    ++ ++  W A++   A + HG   L  
Sbjct: 452 PRTEHYACVVDLLGRAGMEERAYEIIQRM---PMRPSISVWGALLG--ACKMHGKTELGR 506

Query: 338 FRQMQFCGLEP----NVVTLVSLLS 358
               +   L+P    N V L ++L+
Sbjct: 507 IASEKLFELDPQDSGNHVLLSNMLA 531


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/561 (41%), Positives = 336/561 (59%), Gaps = 20/561 (3%)

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L  C  LG   +G+    +  A  V        +V  N +V  Y++ G  +DA  +F +M
Sbjct: 94  LKECTRLGKVEQGR----IVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             +++    VTW+A+IAG++Q     +AL +F QM   GL+PN  TL SLL    S   L
Sbjct: 150 PTKDM----VTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGL 205

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G + H + +K        +   + V +AL+DMYA+C  +D A++ FD +  K+    +
Sbjct: 206 DPGTQLHAFCLKY------GYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSE--VS 257

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  +I  +++ G    AL L  +M  Q K  +P  FT S    ACA + AL  G+ +HA+
Sbjct: 258 WNALISGHARKGEGEHALHLLWKM--QRKNFQPTHFTYSSVFSACASIGALEQGKWVHAH 315

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           ++++  + LI F+ N L+DMY+++G ID A+ VFD L + +VVSW +++TG   HGLG +
Sbjct: 316 MIKSGLK-LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
               F+QM + G+ P+ ++FL +L ACSHSG++D+GL YF+ M K++ +     HY   V
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFV 433

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DLLGR   LD A   I  MP+EPT  +W ALL  CR+H N+ELG  AA R  EL+    G
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSG 493

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
              LLSNIYA+AGRW+DVA++R +MK +GVKK+P CSWV+ +     F   D THPQ ++
Sbjct: 494 PRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKE 553

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           I      +  +IK +GYVP TS  L  VD +E+ + L  HSEKLALA+ +L T  G+PIR
Sbjct: 554 IRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIR 613

Query: 787 ITKNLRICGDCHSAITFISMI 807
           I KN+R+CGDCH+AI F+S I
Sbjct: 614 IKKNIRVCGDCHAAIKFVSKI 634



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 70/458 (15%)

Query: 32  TTTPCIKITSLLLRQCKSLTQV---YLIHQQIIVQNLTHVPPSHLIAAYVSHN--APSPA 86
           +  P   + S LL++C  L +V    ++H  ++    +H   +HL+   +  N  A    
Sbjct: 82  SLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVD---SHFLDNHLVLQNIIVNMYAKCGC 138

Query: 87  LSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           L   +R+    P+   +  W ALI    +   P +A  LF QM+R G  P+ +T   +LK
Sbjct: 139 LDDARRMFDEMPTK-DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLK 197

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           A G       G+ +HA     G+ S+V+V +AL+ MYARC  +  A+  FD M  P   +
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM--PTKSE 255

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--- 260
            VSWN +++ +A+ G+ E  L L  +M      Q    +  +  SACAS+G   +GK   
Sbjct: 256 -VSWNALISGHARKGEGEHALHLLWKMQRK-NFQPTHFTYSSVFSACASIGALEQGKWVH 313

Query: 261 -----------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
                                  + G +++AK+VF+R+   DVVSWN M+TG ++ G  +
Sbjct: 314 AHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGK 373

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLV 354
           +    F++M +  ++ N +++  V+   +  G   E L  F  M+   +EP+V   VT V
Sbjct: 374 ETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFV 433

Query: 355 SLL------------------SGCASVGALLLGK-------ETHCYTIKRVLSVDGSHPD 389
            LL                     A+V   LLG        E   Y  +R   +D     
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSG 493

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
             M+++ +     + + V   R M      K +   +W
Sbjct: 494 PRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSW 531



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 130/267 (48%), Gaps = 17/267 (6%)

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           SQ+ G     AL   + Q+  LV P+    S  L  C RL  +  GR +HA+++ + +  
Sbjct: 64  SQSDGGTGLYAL--DLIQRGSLV-PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLD 120

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
               + N +++MY++ G +D AR +FD +  +++V+WT+L+ G+  +     A   F QM
Sbjct: 121 NHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM 180

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
            + GL P+  T   LL A      +D G +   +   ++G  +     + +VD+  R   
Sbjct: 181 LRLGLQPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGH 239

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK-DGSYTLLSN 673
           +D A    +GMP + + + W AL++G   HA    GE A + L +++ +    ++   S+
Sbjct: 240 MDAAQLAFDGMPTK-SEVSWNALISG---HARKGEGEHALHLLWKMQRKNFQPTHFTYSS 295

Query: 674 IYA--------NAGRWKDVARIRSLMK 692
           +++          G+W     I+S +K
Sbjct: 296 VFSACASIGALEQGKWVHAHMIKSGLK 322


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/761 (34%), Positives = 387/761 (50%), Gaps = 85/761 (11%)

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
           + R    +H++   +G   +  V  AL+ + AR        +L  E  + G  D V WN 
Sbjct: 67  ARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNK 126

Query: 210 IVAAYAQSGDAEGGLMLFARMT--GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
            VA  A++ + +  + +F  M   G  + +G  V    AL           G   GM  E
Sbjct: 127 HVAMLAEAEEWDEAIAVFREMQARGVPRRRGRAVH-AYALKLALDAHPLVPGFLAGMYAE 185

Query: 268 ------AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
                 A +V + M    VV WNA+V   +R+G  +DA  L  +M +   + NV TW+ V
Sbjct: 186 NADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTV 245

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           ++G ++ G   EAL V   M   GL P+  T+ SLL   A+ G L  G E HC+ ++  L
Sbjct: 246 LSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQL 305

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA----------------------- 418
                   D+    AL+DMYAKC  +D A+ +FDA+                        
Sbjct: 306 E------PDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIA 359

Query: 419 -------PKNR---DVATWTVMIGSYSQNGGANDALALFPQM------------------ 450
                   KNR   D+ TW  +I  YS NG ++ A+ L  Q+                  
Sbjct: 360 LELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISG 419

Query: 451 ----------------FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
                            Q+D  V+P+  T+S  L ACA LA  + G+++H + LR  Y+ 
Sbjct: 420 SCHNGEYEDSFYFCHEMQKDG-VQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDC 478

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +  V+  LIDMYS+ G + +A+V+F++++Q+N+V   +++TG  +HG G +A   F  M
Sbjct: 479 DM-VVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDM 537

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
              GL PD +TF  LL AC   G+V +G +YFD M  ++G+    E+YAC+VDLL R   
Sbjct: 538 WNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLARCGY 597

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           LDEA++ IE  P++P    W ALL GC IH N+ L E+AA  L  LE     +Y L+ N+
Sbjct: 598 LDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYLLMMNL 657

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           Y     + +   ++  MK  GV  RPG SW+Q ++G   F V  + HP++ +IYE L  L
Sbjct: 658 YEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRL 717

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL-TTAPGTPIRITKNLRI 793
           V +IK  GYVP TS   ++V +EEK  LL  H+EKLA+ YG++ + A   P+R+ KN R+
Sbjct: 718 VFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRM 777

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH     IS + + +IILRD+ RFHHF +G C+C  YW
Sbjct: 778 CNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/635 (37%), Positives = 363/635 (57%), Gaps = 34/635 (5%)

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           SWN  +   A+    +  L L+ +M  +GD     +  +   A  +CASL     G Q  
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSP---NAFTFPFAFKSCASLSLPLAGSQL- 78

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
                  V +     +     ++++ Y +  +   A  +F +    + +   V ++A+IA
Sbjct: 79  ----HGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDE--NHHSRNLAVCYNALIA 132

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           GY+      +A+ +FRQM+  G+  N VT++ L+  CA    L  G   H  +++    +
Sbjct: 133 GYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVR--FGL 190

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
           DG    DL V N L+ MY +C SVD AR +FD +  K   + TW  MI  Y+QNG A   
Sbjct: 191 DG----DLSVGNCLLTMYVRCGSVDFARKLFDGMPEKG--LITWNAMISGYAQNGLAGHV 244

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L L+ +M  +   + P+  TL   L +CA L A   GR++   +  + +    PF+ N L
Sbjct: 245 LDLYRKM--EFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG-FNPFLKNAL 301

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           I+MY+R G++  AR +FD + ++NV+SWT+++ GYGMHG G+ A   FD+M      PDG
Sbjct: 302 INMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDG 361

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
             F+ +L ACSH+G+ ++GL YF +M +++G+    EHY+C+VDLLGRA RL+EA +LI 
Sbjct: 362 AAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIG 421

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            M +EP   +W ALL  C+IH NVEL ELA  +++E E    G Y LLSNI++ AG  + 
Sbjct: 422 SMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEG 481

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           + R+R +M+   +KK PGCS+V+ +     F  GDRTHPQ+Q+IY +L GL   IK  G 
Sbjct: 482 ILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRG- 540

Query: 744 VPQTSFALHDVDDEEKGDLLFE----HSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
                   +D D E + + L      HSEKLA+A+G++ T PGT I + KNLR+CGDCH 
Sbjct: 541 ------GSNDNDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHL 594

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +  +S I++ ++++RD+ RFHHFK G C+CK YW
Sbjct: 595 FLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 143/474 (30%), Positives = 240/474 (50%), Gaps = 34/474 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA +R   R R    A  L+ QM+  G  P+ +TFPF  K+C  L     GS +H  + 
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G +   FV  +L++MY +C T++ AR++FDE         V +N ++A Y+ +     
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNL-AVCYNALIAGYSLNSRFSD 142

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACAS---LGTWSRGKQCGMMEEAKKVFERMKVK- 278
            ++LF +M  +  V  + V+++  +  CA    LG  +    C +         R  +  
Sbjct: 143 AVLLFRQMRKE-GVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV---------RFGLDG 192

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+   N ++T Y R GS + A  LF  M ++     ++TW+A+I+GYAQ G     LD++
Sbjct: 193 DLSVGNCLLTMYVRCGSVDFARKLFDGMPEK----GLITWNAMISGYAQNGLAGHVLDLY 248

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV-LSVDGSHPDDLMVINAL 397
           R+M+F G+ P+ VTLV +LS CA +GA   G+E      +R+ LS  G +P    + NAL
Sbjct: 249 RKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVE----QRIELSGFGFNP---FLKNAL 301

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I+MYA+C ++  AR +FD +  KN  V +WT +I  Y  +G    A+ LF +M   D+L 
Sbjct: 302 INMYARCGNLVKARAIFDGMTEKN--VISWTAIIAGYGMHGQGELAVQLFDEMISSDEL- 358

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            P+       L AC+       G      + R+      P   +C++D+  R+G ++ AR
Sbjct: 359 -PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEAR 417

Query: 518 VVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            +  ++  + +   W +L+    +H   + A  AF+++ +    P  + + VLL
Sbjct: 418 KLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIE--FEPTNIGYYVLL 469


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/550 (40%), Positives = 332/550 (60%), Gaps = 46/550 (8%)

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           T +++I GY  +    +A+  ++ M   GL+P+  T  SL   C   G L  GK+ HC++
Sbjct: 45  TCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHS 101

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K   + D        + N L++MY+ C  +  AR +FD +   N+ V +W  MIG+Y+Q
Sbjct: 102 TKLGFASDA------YIQNTLMNMYSNCGCLVSARKVFDKMV--NKSVVSWATMIGAYAQ 153

Query: 437 ---------------------------NGGAND-----ALALFPQMFQQDKLVKPNAFTL 464
                                      NG   D     AL+LF +M  Q   VK +  T+
Sbjct: 154 WDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEM--QLSGVKGDKVTM 211

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           +  L+AC  L AL  G+ +H Y+ + + E+ +  +   L+DMY++ G I++A  VF  + 
Sbjct: 212 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVA-LGTALVDMYAKCGSIESAMRVFQEMP 270

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +++V++WT+L+ G  M G G KA   F +M+   + PD +TF+ +L ACSH+G+V++G+ 
Sbjct: 271 EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIA 330

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YF+SM  ++GI    EHY C+VD+LGRA R+ EA +LI+ MPM P   + V LL+ CRIH
Sbjct: 331 YFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIH 390

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N+ + E AA +L+EL+ +  G+Y LLSNIY++   W+   ++R LM    +KK PGCS 
Sbjct: 391 GNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSA 450

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           ++       F  GD +HPQS +IYE L  +++R+K+ GYVP  S  L D+D++EK + L 
Sbjct: 451 IEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELS 510

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLA+A+G+L+T PGTPIR+ KNLR+C DCHSA+ FIS + N EII+RD NRFHHF 
Sbjct: 511 LHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFT 570

Query: 825 EGSCTCKGYW 834
           +GSC+C+ +W
Sbjct: 571 KGSCSCRDFW 580



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 159/326 (48%), Gaps = 48/326 (14%)

Query: 71  SHLIAAYVSHNAPS-PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           S ++A    H++ S P   L+    P+P + F  N++IR      LP  A   +  MM +
Sbjct: 14  SKIVAFCALHDSGSLPYARLVFNQIPNP-TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQ 72

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  PD +TFP + K+CG L     G  +H      GF S+ ++ N LM MY+ C  L  A
Sbjct: 73  GLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSA 129

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-------------TGDVK- 235
           R++FD+M       +VSW T++ AYAQ       + LF RM              G V+ 
Sbjct: 130 RKVFDKMVNKS---VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVED 186

Query: 236 -----------------VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                            V+GD V++ + L AC  LG    GK   +  E +K+       
Sbjct: 187 SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKI-----EV 241

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV    A+V  Y++ GS E A  +F++M ++    +V+TW+A+I G A  G G +AL++F
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMPEK----DVMTWTALIVGLAMCGQGLKALELF 297

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVG 364
            +MQ   ++P+ +T V +L+ C+  G
Sbjct: 298 HEMQMSEVKPDAITFVGVLAACSHAG 323



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 170/369 (46%), Gaps = 54/369 (14%)

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
           +L YAR +F+++  P      + N+I+  Y         ++ +  M     +QG      
Sbjct: 27  SLPYARLVFNQIPNP---TTFTCNSIIRGYTNKNLPRQAILFYQLMM----LQGLDPDRF 79

Query: 245 NALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVK 278
              S   S G    GKQ                          CG +  A+KVF++M  K
Sbjct: 80  TFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNK 139

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            VVSW  M+  Y++     +A  LF++M    +  N+  W+ +I G+ +     EAL +F
Sbjct: 140 SVVSWATMIGAYAQWDLPHEAIKLFRRME---IASNLFCWNIMINGHVEDSDYEEALSLF 196

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +MQ  G++ + VT+ SLL  C  +GAL LGK  H Y  K  + V      D+ +  AL+
Sbjct: 197 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV------DVALGTALV 250

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC S++ A  +F  +  K  DV TWT +I   +  G    AL LF +M  Q   VK
Sbjct: 251 DMYAKCGSIESAMRVFQEMPEK--DVMTWTALIVGLAMCGQGLKALELFHEM--QMSEVK 306

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYV--LRNQYEMLIPFVAN--CLIDMYSRSGDID 514
           P+A T    L AC+    +  G    AY   + N+Y  + P + +  C++DM  R+G I 
Sbjct: 307 PDAITFVGVLAACSHAGLVNEGI---AYFNSMPNKYG-IQPSIEHYGCMVDMLGRAGRIA 362

Query: 515 TARVVFDNL 523
            A  +  N+
Sbjct: 363 EAEDLIQNM 371



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 148/349 (42%), Gaps = 54/349 (15%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I AY   + P  A+ L +R+  +  ++F WN +I   V     + A  LF +M   G  
Sbjct: 147 MIGAYAQWDLPHEAIKLFRRMEIAS-NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 205

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            D+ T   +L AC  L +   G  +H  I     + +V +  AL+ MYA+C ++  A ++
Sbjct: 206 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 265

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F EM +    D+++W  ++   A  G     L LF  M    +V+ D ++ V  L+AC+ 
Sbjct: 266 FQEMPEK---DVMTWTALIVGLAMCGQGLKALELFHEMQMS-EVKPDAITFVGVLAACSH 321

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
            G  + G                    +  +N+M   Y                    ++
Sbjct: 322 AGLVNEG--------------------IAYFNSMPNKYG-------------------IQ 342

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            ++  +  ++    + G   EA D+ + M    + P+   LV LLS C   G L++ +  
Sbjct: 343 PSIEHYGCMVDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLLSACRIHGNLVVAER- 398

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
                ++++ +D   P +      L ++Y+  K+ + A+ M + +  +N
Sbjct: 399 ---AAQQLIELD---PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 441


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/719 (35%), Positives = 394/719 (54%), Gaps = 46/719 (6%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+A     +   G+ +H  +   GF S+  + N L+ MYA+C  L  A ++F  M +  
Sbjct: 10  MLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPER- 68

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  ++  + + GDA   L L   M     V  +  +L  +L AC  +G  +   
Sbjct: 69  --NVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMA--- 123

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
             G+      V    +   VV+ N++V  YS+ G   DA  +F       V  N+VTW+A
Sbjct: 124 -AGVWIHGACVRAGFEGHHVVA-NSLVLLYSKGGRIGDARRVFDG----TVFRNLVTWNA 177

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLE-----PNVVTLVSLLSGCASVGALLLGKETHCY 375
           +I+GYA  GHG ++L VFR+MQ    E     P+  T  SLL  C S+GA   G + H  
Sbjct: 178 MISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAA 237

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSY 434
            + R +S       + ++  AL+DMY KC+ +  +A  +F+ +  KN     WT +I  +
Sbjct: 238 MVIRGVST----ASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKN--AIQWTTVIVGH 291

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +Q G   +A+ LF + +     V+ +   LS  +   A  A +  GRQ+H Y ++    +
Sbjct: 292 AQEGQVKEAMELFGRFWSSG--VRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGL 349

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +  VAN LIDMY + G  D A   F  +  RNVVSWT+++ G G HG G +A   F++M
Sbjct: 350 DVS-VANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEM 408

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           R EG+ PD V +L LL ACSHSG+V++  +YF ++  +  +  RAEHYAC+VDLLGRA  
Sbjct: 409 RAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGE 468

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L EA +L+  MPM PT  +W  LL+ CR+H NV +G  A   LL ++ +   +Y +LSNI
Sbjct: 469 LSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNI 528

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKEGTATFFVGDRTHPQSQKIYEILAG 733
           +A AG W++  R+R  M+  G++K+ GCSWV+ GKE    +  GD +HP++  I  +L  
Sbjct: 529 FAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRD 588

Query: 734 LVQRIKA-MGYVP-----QTSFALHDVDDEEKGDLLFEHSEKLALAY------------G 775
           + + ++  +GY P      +  ALHDVD+E + + L  HSE+LA+              G
Sbjct: 589 VERTMRERLGYSPGSSSSSSEAALHDVDEESRAESLRAHSERLAVGLWLLLHHDHDHGEG 648

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +  T     IR+ KNLR+CGDCH     +S ++   +++RD+NRFH F++G C+CK YW
Sbjct: 649 MGGTKRKEVIRVYKNLRVCGDCHEFFKGLSSVVGRVLVVRDANRFHRFEDGVCSCKDYW 707



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 201/424 (47%), Gaps = 44/424 (10%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+E+T    LKACG +     G  +H     +GF+ +  V N+L+ +Y++   +  AR++
Sbjct: 104 PNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRV 163

Query: 193 FD-EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG----DVKVQGDGVSLVNAL 247
           FD  +F+    ++V+WN +++ YA +G     L++F  M      +   Q D  +  + L
Sbjct: 164 FDGTVFR----NLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLL 219

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDV-VSWNAMVTG-----YSRIGS-FEDAF 300
            AC SLG    G Q         V   M ++ V  + NA++ G     Y +       A 
Sbjct: 220 KACGSLGAAREGAQ---------VHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAM 270

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            +F ++ Q+    N + W+ VI G+AQ G   EA+++F +    G+  +   L S++   
Sbjct: 271 QVFNRLEQK----NAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVF 326

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A    +  G++ HCYT+K    +D S      V N+LIDMY KC   D A   F  +  +
Sbjct: 327 ADFALVEQGRQVHCYTVKTPAGLDVS------VANSLIDMYHKCGLTDEAARRFREVPAR 380

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           N  V +WT MI    ++G   +A+ +F +M  +   V+P+       L AC+    +   
Sbjct: 381 N--VVSWTAMINGLGKHGHGQEAIHMFEEMRAEG--VEPDEVAYLALLSACSHSGLVEEC 436

Query: 481 RQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTG 537
           R+  + +  ++   L P   +  C++D+  R+G++  A+ +   +     V  W +L++ 
Sbjct: 437 RRYFSAIRHDRR--LRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSA 494

Query: 538 YGMH 541
             +H
Sbjct: 495 CRVH 498



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 28/277 (10%)

Query: 43  LLRQCKSL---TQVYLIHQQIIVQNLTHVPPSHLIAA----YVSHNAPSP-ALSLLQRIS 94
           LL+ C SL    +   +H  ++++ ++    + L  A    YV      P A+ +  R+ 
Sbjct: 218 LLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLE 277

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
               ++ W   ++  A   ++ + A  LF +    G   D +    V+    +      G
Sbjct: 278 QKN-AIQWTTVIVGHAQEGQVKE-AMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQG 335

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VH     +    +V V N+L+ MY +C     A + F E+      ++VSW  ++   
Sbjct: 336 RQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPAR---NVVSWTAMINGL 392

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF-- 272
            + G  +  + +F  M  +  V+ D V+ +  LSAC+           G++EE ++ F  
Sbjct: 393 GKHGHGQEAIHMFEEMRAE-GVEPDEVAYLALLSACS---------HSGLVEECRRYFSA 442

Query: 273 ---ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
              +R        +  MV    R G   +A  L   M
Sbjct: 443 IRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATM 479


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/666 (36%), Positives = 373/666 (56%), Gaps = 25/666 (3%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F+C  L+ +Y++ D  + A         P    +VS+   ++  AQ G     L  FA M
Sbjct: 52  FICAHLVNLYSKLDLPAAAAAALASDPHP---TVVSYTAFISGAAQHGRPLPALSAFAGM 108

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSR-GKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
              + ++ +  +  +A  A AS    S  G Q   +      F  + V   VS  A+   
Sbjct: 109 L-RLGLRPNDFTFPSAFKAAASAPPRSTIGPQ---IHSLAIRFGYLPVDPFVSCAALDM- 163

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y + G  + A  LF +M   NV    V W+AV+      G   E ++ +  ++  G  PN
Sbjct: 164 YFKTGRLKLARHLFGEMPNRNV----VAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPN 219

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
           VV+  +  + CA    L LG++ H + +K    +D S      V+N+++D Y KC+    
Sbjct: 220 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS------VLNSMVDFYGKCRCAGK 273

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +FD +  +N    +W  M+ +Y+QNG   +A A +    +  +  +P  F +S AL 
Sbjct: 274 ARAVFDGMGVRNS--VSWCSMVAAYAQNGAEEEAFAAYLGARRSGE--EPTDFMVSSALT 329

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            CA L  L  GR +HA  +R+  +  I FVA+ L+DMY + G ++ A  +F    QRN+V
Sbjct: 330 TCAGLLGLHLGRALHAVAVRSCIDANI-FVASALVDMYGKCGCVEDAEQIFYETPQRNLV 388

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           +W +++ GY   G    A   FD M + G  AP+ +T + ++ +CS  G+   G + F++
Sbjct: 389 TWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFET 448

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M + FGI  R EHYAC+VDLLGRA   ++A E+I+GMPM P+  +W ALL  C++H   E
Sbjct: 449 MRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTE 508

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           LG +AA +L EL+ +  G++ LLSN++A+AGRW +   IR  MK+ G+KK PGCSWV  K
Sbjct: 509 LGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWK 568

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F   D  H    +I  +L+ L ++++A GY+P T ++L+D+++EEK   +F+HSE
Sbjct: 569 NVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSE 628

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLALA+G++   PG PIRI KNLRIC DCH A  FIS I+  EII+RD+NRFHHFK+  C
Sbjct: 629 KLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQC 688

Query: 829 TCKGYW 834
           +C  YW
Sbjct: 689 SCGDYW 694



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 218/494 (44%), Gaps = 41/494 (8%)

Query: 59  QIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDN 118
           ++I   L+    +HL+  Y   + P+ A + L    P P +V  + A I  A +   P  
Sbjct: 43  RLIAPALSPFICAHLVNLYSKLDLPAAAAAALAS-DPHP-TVVSYTAFISGAAQHGRPLP 100

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPS-SRCGSSVHAVICSSGF-DSNVFVCNAL 176
           A   F  M+R G  P+++TFP   KA    P  S  G  +H++    G+   + FV  A 
Sbjct: 101 ALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAA 160

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           + MY +   L  AR LF EM      ++V+WN ++      G     L       G  + 
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNR---NVVAWNAVMTNAVLDGRP---LETIEAYFGLREA 214

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTGYS 291
            G    L N +SACA     +      + E+    F    VK     DV   N+MV  Y 
Sbjct: 215 GG----LPNVVSACAFFNACAGAMYLSLGEQ----FHGFVVKCGFEMDVSVLNSMVDFYG 266

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           +      A A+F  M       N V+W +++A YAQ G   EA   +   +  G EP   
Sbjct: 267 KCRCAGKARAVFDGMGVR----NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDF 322

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
            + S L+ CA +  L LG+  H   ++  +        ++ V +AL+DMY KC  V+ A 
Sbjct: 323 MVSSALTTCAGLLGLHLGRALHAVAVRSCIDA------NIFVASALVDMYGKCGCVEDAE 376

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +F       R++ TW  MIG Y+  G A +AL +F  M +  +   PN  TL   + +C
Sbjct: 377 QIF--YETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGE-TAPNYITLVNVITSC 433

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           +R    + G ++    +R ++  + P   +  C++D+  R+G  + A  V   +  R  +
Sbjct: 434 SRGGLTKDGYELFE-TMRERFG-IEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSI 491

Query: 530 S-WTSLMTGYGMHG 542
           S W +L+    MHG
Sbjct: 492 SVWGALLGACKMHG 505



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 22/252 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +++    +    + AF  +L   R G  P ++     L  C  L     G ++HAV  
Sbjct: 289 WCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAV 348

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S  D+N+FV +AL+ MY +C  +  A Q+F E  Q    ++V+WN ++  YA  GDA+ 
Sbjct: 349 RSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQR---NLVTWNAMIGGYAHIGDAQN 405

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L++F  M    +   + ++LVN +++C      SRG   G+ ++  ++FE M+ +  + 
Sbjct: 406 ALLVFDDMIRSGETAPNYITLVNVITSC------SRG---GLTKDGYELFETMRERFGIE 456

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  +V    R G  E A+ + + M    ++ ++  W A++   A + HG   L  
Sbjct: 457 PRTEHYACVVDLLGRAGMEEQAYEVIQGM---PMRPSISVWGALLG--ACKMHGKTELGR 511

Query: 338 FRQMQFCGLEPN 349
               +   L+P 
Sbjct: 512 IAAEKLFELDPQ 523



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 2/163 (1%)

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           R GR  HA  LR     L PF+   L+++YS+      A     +     VVS+T+ ++G
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISG 91

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
              HG    A  AF  M + GL P+  TF     A + +           S++  FG   
Sbjct: 92  AAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLP 151

Query: 598 RAEHYAC-IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
                +C  +D+  +  RL  A  L   MP     + W A++ 
Sbjct: 152 VDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNV-VAWNAVMT 193


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/691 (34%), Positives = 385/691 (55%), Gaps = 24/691 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N LI    +    ++A  +F +M   G  PD  T   +L AC  L   + G+ +H+ + 
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G  S+  +  +L+ +Y +C  +  A  +F+   +    ++V WN ++ A+ Q  D   
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT---NVVLWNLMLVAFGQINDLAK 328

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF +M     ++ +  +    L  C        G+Q   +   K  FE     D+  
Sbjct: 329 SFELFCQMQA-AGIRPNQFTYPCILRTCTCTREIDLGEQIHSLS-VKTGFE----SDMYV 382

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              ++  YS+ G  E A  + + +++++V    V+W+++IAGY Q     +AL  F++MQ
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDV----VSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            CG+ P+ + L S +SGCA + A+  G + H       + V G +  D+ + NAL+++YA
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHAR-----IYVSG-YSGDVSIWNALVNLYA 492

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  +  A   F+ I  +++D  TW  ++  ++Q+G   +AL +F +M Q    VK N F
Sbjct: 493 RCGRIREAFSSFEEI--EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG--VKHNVF 548

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T   AL A A LA ++ G+QIHA V++  +      V N LI +Y + G  + A++ F  
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETE-VGNALISLYGKCGSFEDAKMEFSE 607

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSW +++T    HG G +A   FDQM+KEG+ P+ VTF+ +L ACSH G+V++G
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YF SMS E+GI  R +HYAC++D+ GRA +LD A + IE MP+    ++W  LL+ C+
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H N+E+GE AA  LLELE     SY LLSN YA   +W +  ++R +M+  GV+K PG 
Sbjct: 728 VHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGR 787

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ K     FFVGDR HP +++IY  LA +  R+  +GY  +     HD + E +   
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPT 847

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
              HSEKLA+ +G+++  P  P+R+ KNLR+
Sbjct: 848 DLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 171/566 (30%), Positives = 276/566 (48%), Gaps = 32/566 (5%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           P     LF    R+        F   L+AC G     +    +HA   + G      V N
Sbjct: 22  PAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGN 81

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
            L+ +Y++   +  AR++F+E+      D VSW  +++ YAQ+G  E  L L+ +M    
Sbjct: 82  LLIDLYSKNGLVLPARRVFEEL---SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAG 138

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
            V    V L + LS+C     +++G+         + ++     ++   NA++T Y R G
Sbjct: 139 VVPTPYV-LSSVLSSCTKAELFAQGRLI-----HAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           SF  A  +F  M   +     VT++ +I+G+AQ GHG  AL++F +MQF GL P+ VT+ 
Sbjct: 193 SFRLAERVFCDMPHRDT----VTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SLL+ CAS+G L  G + H Y  K  +S       D ++  +L+D+Y KC  V+ A V+F
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGIS------SDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           ++    N  V  W +M+ ++ Q      +  LF QM  Q   ++PN FT  C L  C   
Sbjct: 303 NSSDRTN--VVLWNLMLVAFGQINDLAKSFELFCQM--QAAGIRPNQFTYPCILRTCTCT 358

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             +  G QIH+  ++  +E  + +V+  LIDMYS+ G ++ AR V + LK+++VVSWTS+
Sbjct: 359 REIDLGEQIHSLSVKTGFESDM-YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + GY  H     A  AF +M+K G+ PD +     +  C+    + QGL+    +    G
Sbjct: 418 IAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-G 476

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
            S     +  +V+L  R  R+ EA    E +      I W  L++G    A   L E A 
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLVSG---FAQSGLHEEAL 532

Query: 655 NRLLELESE--KDGSYTLLSNIYANA 678
              + ++    K   +T +S + A+A
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASA 558



 Score =  218 bits (556), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 163/592 (27%), Positives = 279/592 (47%), Gaps = 30/592 (5%)

Query: 56  IHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH + + + L    +  + LI  Y  +    PA  + + +S        W A++    + 
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSAR--DNVSWVAMLSGYAQN 121

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
            L + A  L+ QM R G  P  Y    VL +C +      G  +HA     GF S +FV 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           NA++ +Y RC +   A ++F +M      D V++NT+++ +AQ G  E  L +F  M   
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHR---DTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
             +  D V++ + L+ACASLG   +G Q         +F+     D +   +++  Y + 
Sbjct: 239 -GLSPDCVTISSLLAACASLGDLQKGTQL-----HSYLFKAGISSDYIMEGSLLDLYVKC 292

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  E A  +F      + + NVV W+ ++  + Q     ++ ++F QMQ  G+ PN  T 
Sbjct: 293 GDVETALVIFNS----SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
             +L  C     + LG++ H       LSV      D+ V   LIDMY+K   ++ AR +
Sbjct: 349 PCILRTCTCTREIDLGEQIHS------LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRV 402

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
            + +  K +DV +WT MI  Y Q+    DALA F +M  Q   + P+   L+ A+  CA 
Sbjct: 403 LEML--KEKDVVSWTSMIAGYVQHECCKDALAAFKEM--QKCGIWPDNIGLASAISGCAG 458

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           + A+R G QIHA +  + Y   +  + N L+++Y+R G I  A   F+ ++ ++ ++W  
Sbjct: 459 INAMRQGLQIHARIYVSGYSGDVS-IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           L++G+   GL ++A   F +M + G+  +  TF+  L A ++   + QG K   +   + 
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQG-KQIHARVIKT 576

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           G S   E    ++ L G+    ++A      M  E   + W  ++  C  H 
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 341/572 (59%), Gaps = 38/572 (6%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF---RQMQ 342
           ++  Y++  S  DA  +F +M + NV    V+W+A+I+ Y+QRG+  +AL++F    ++ 
Sbjct: 284 LIVLYTKCDSLGDAHNVFDEMPERNV----VSWTAMISAYSQRGYASQALNLFFADVKIS 339

Query: 343 FCGL------------------EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
             G+                  EPN  T  ++L+ C S    +LG++ H   IK      
Sbjct: 340 LTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKL----- 394

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            ++ D + V ++L+DMYAK   +  AR +F+ +    RDV + T +I  Y+Q G   +AL
Sbjct: 395 -NYEDHVFVGSSLLDMYAKDGKIHEARTVFECLP--ERDVVSCTAIISGYAQLGLDEEAL 451

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF ++  Q + +K N  T +  L A + LAAL  G+Q+H +VLR++    +  + N LI
Sbjct: 452 ELFRRL--QGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFV-VLQNSLI 508

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDG 563
           DMYS+ G++  +R +FD + +R V+SW +++ GY  HG G +    F  MR+E  + PD 
Sbjct: 509 DMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDS 568

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSK-EFGISARAEHYACIVDLLGRANRLDEAVELI 622
           VT L +L  CSH G+ D+GL  F+ MS  +  +  + EHY C+VDLLGR+ R++EA E I
Sbjct: 569 VTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFI 628

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + MP EPT  IW +LL  CR+H+NV++GE A  +LLE+E    G+Y +LSN+YA+AGRW+
Sbjct: 629 KKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWE 688

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DV+ +R LM    V K PG S ++  +   TF   DR+HP+ ++I   +  L    K +G
Sbjct: 689 DVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVG 748

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP  S  LHDVD+E+K  +L  HSEKLAL++G++ +    PIR+ KNLRIC DCH+   
Sbjct: 749 YVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAK 808

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +IS +   E+ LRD NRFH    G C+C+ YW
Sbjct: 809 YISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 142/561 (25%), Positives = 242/561 (43%), Gaps = 123/561 (21%)

Query: 61  IVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120
           +   L  V PSH  +++V  + PS    L+  + P       +N+      R   P N+ 
Sbjct: 159 VAHELARVAPSH-ASSHVYDDVPSCIRYLILTL-PIIIHQGCFNSKSMFLTRHVFPSNSR 216

Query: 121 RL------------FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
            L             LQM   G++     +  +L  C    + R G  VHA +  + +  
Sbjct: 217 TLSTFTTHIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLP 276

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +VF+   L+ +Y +CD+L  A  +FDEM +    ++VSW  +++AY+Q G A   L LF 
Sbjct: 277 SVFLRTRLIVLYTKCDSLGDAHNVFDEMPER---NVVSWTAMISAYSQRGYASQALNLFF 333

Query: 229 RMTGDVKVQGDGV-----------------------SLVNALSACASLGTWSRGKQC--- 262
               DVK+   GV                       +    L++C S   +  G+Q    
Sbjct: 334 ---ADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSL 390

Query: 263 -----------------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
                                  G + EA+ VFE +  +DVVS  A+++GY+++G  E+A
Sbjct: 391 IIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEA 450

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             LF++++ E +K N VT++ V+                                  LSG
Sbjct: 451 LELFRRLQGEGMKSNYVTYTGVLTA--------------------------------LSG 478

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
            A   AL LGK+ H + ++  +      P  +++ N+LIDMY+KC ++  +R +FD +  
Sbjct: 479 LA---ALDLGKQVHNHVLRSEI------PSFVVLQNSLIDMYSKCGNLTYSRRIFDTMY- 528

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
             R V +W  M+  YS++G   + L LF  M ++ K VKP++ T+   L  C+       
Sbjct: 529 -ERTVISWNAMLVGYSKHGEGREVLKLFTLMREETK-VKPDSVTILAVLSGCSHGGLEDK 586

Query: 480 GRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK----QRNVVSWTS 533
           G  I   +   + E+  P + +  C++D+  RSG ++ A   F+ +K    +     W S
Sbjct: 587 GLNIFNDMSSGKIEVE-PKMEHYGCVVDLLGRSGRVEEA---FEFIKKMPFEPTAAIWGS 642

Query: 534 LMTGYGMHGLGDKAHWAFDQM 554
           L+    +H   D   +A  Q+
Sbjct: 643 LLGACRVHSNVDIGEFAGQQL 663



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 53/337 (15%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLL-QRISPSPFSV 100
           +L  +C SL   + +  ++  +N+  V  + +I+AY      S AL+L    +  S   V
Sbjct: 286 VLYTKCDSLGDAHNVFDEMPERNV--VSWTAMISAYSQRGYASQALNLFFADVKISLTGV 343

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGW---HPDEYTFPFVLKACGELPSSRCGSSV 157
           +  + L     +L  P+           R W    P+E+TF  VL +C        G  +
Sbjct: 344 YAIDKL-----KLSNPN-----------RPWVCTEPNEFTFATVLTSCTSSLGFILGRQI 387

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H++I    ++ +VFV ++L+ MYA+   +  AR +F+ + +    D+VS   I++ YAQ 
Sbjct: 388 HSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPER---DVVSCTAIISGYAQL 444

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
           G  E  L LF R+ G+  ++ + V+    L+A + L     GKQ                
Sbjct: 445 GLDEEALELFRRLQGE-GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVL 503

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE-N 310
                     CG +  ++++F+ M  + V+SWNAM+ GYS+ G   +   LF  MR+E  
Sbjct: 504 QNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETK 563

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
           VK + VT  AV++G +  G   + L++F  M    +E
Sbjct: 564 VKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIE 600



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 12/261 (4%)

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           A+I    +L L + A  LF ++   G   +  T+  VL A   L +   G  VH  +  S
Sbjct: 436 AIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRS 495

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
              S V + N+L+ MY++C  L+Y+R++FD M++     ++SWN ++  Y++ G+    L
Sbjct: 496 EIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYER---TVISWNAMLVGYSKHGEGREVL 552

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN 284
            LF  M  + KV+ D V+++  LS C+  G   +G        + K+    K++    + 
Sbjct: 553 KLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKME---HYG 609

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
            +V    R G  E+AF   KKM  E        W +++   A R H +  +  F   Q  
Sbjct: 610 CVVDLLGRSGRVEEAFEFIKKMPFEPT---AAIWGSLLG--ACRVHSNVDIGEFAGQQLL 664

Query: 345 GLEP-NVVTLVSLLSGCASVG 364
            +EP N    V L +  AS G
Sbjct: 665 EIEPGNAGNYVILSNLYASAG 685



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 31/219 (14%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQ 525
           L  C    A R G+++HA++++ +Y   +P  F+   LI +Y++   +  A  VFD + +
Sbjct: 250 LNECVNKRAFREGQRVHAHMIKTRY---LPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPE 306

Query: 526 RNVVSWTSLMTGYGMHGLGDKAH--------------WAFDQMRKEG-------LAPDGV 564
           RNVVSWT++++ Y   G   +A               +A D+++            P+  
Sbjct: 307 RNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEF 366

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF  +L +C+ S     G +   S+  +          + ++D+  +  ++ EA  + E 
Sbjct: 367 TFATVLTSCTSSLGFILG-RQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFEC 425

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           +P E   +   A+++G   +A + L E A      L+ E
Sbjct: 426 LP-ERDVVSCTAIISG---YAQLGLDEEALELFRRLQGE 460


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 327/551 (59%), Gaps = 15/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
            +++T Y+R G    A  +F +M   +     V+W+A+I  Y   G   EA+ V R    
Sbjct: 110 TSLLTLYARCGLLHRAQRVFDEMPHPST----VSWTALITAYMDAGDLREAVHVARNAFA 165

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+  T V +L+ CA V  L  G+     T+ R    +G     + V  A +D+Y K
Sbjct: 166 NGMRPDSFTAVRVLTACARVADLATGE-----TVWRAAEQEGI-AQSVFVATAAVDLYVK 219

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +  AR +FD +  +++D   W  M+G Y+ NG   +AL LF  M  Q + V+P+ + 
Sbjct: 220 CGEMAKAREVFDKM--RDKDAVAWGAMVGGYASNGHPREALDLFLAM--QAEGVRPDCYA 275

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++ AL AC RL AL  GRQ    V  +++ +  P +   LIDMY++ G    A VVF  +
Sbjct: 276 VAGALSACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTAEAWVVFQQM 334

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           ++++++ W +++ G GM G    A     QM K G+  +  TF+ LL +C+H+G++  G 
Sbjct: 335 RKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 394

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YF +M+K + IS R EHY CIVDLL RA  L EA +LI+ MPM    +I  ALL GC+I
Sbjct: 395 RYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKI 454

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N EL E    +L+ LE    G+Y +LSNIY+N GRW+D A++R  MK  GV+K P CS
Sbjct: 455 HRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACS 514

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           WV+ +     F VGD++HP S +IY+ L  L   +K MGY P T   + DV+DEEK   L
Sbjct: 515 WVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTL 574

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+A+ +L T PG  IR+TKNLR+C DCH+AI  IS I + EII+RD+NRFH F
Sbjct: 575 VHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCF 634

Query: 824 KEGSCTCKGYW 834
           ++GSC+C  YW
Sbjct: 635 RDGSCSCNDYW 645



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 188/462 (40%), Gaps = 49/462 (10%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNA 82
           ++L  +   P      + L+    L       +Q+  ++L   +H  P H++ + ++  A
Sbjct: 59  LRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNP-HVLTSLLTLYA 117

Query: 83  PSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
               L   QR+    P P +V W  ALI   +       A  +       G  PD +T  
Sbjct: 118 RCGLLHRAQRVFDEMPHPSTVSW-TALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 176

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
            VL AC  +     G +V       G   +VFV  A + +Y +C  ++ AR++FD+M   
Sbjct: 177 RVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDK 236

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D V+W  +V  YA +G     L LF  M  +  V+ D  ++  ALSAC  LG    G
Sbjct: 237 ---DAVAWGAMVGGYASNGHPREALDLFLAMQAE-GVRPDCYAVAGALSACTRLGALDLG 292

Query: 260 KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           +Q                          CG   EA  VF++M+ KD++ WNAM+ G    
Sbjct: 293 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 352

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVT 352
           G  + AF L  +M +  VKLN  T+  ++      G   +    F  M +   + P +  
Sbjct: 353 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 412

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR- 411
              ++   +  G L   +E H       L  D   P + +++ AL+      ++ ++A  
Sbjct: 413 YGCIVDLLSRAGLL---QEAH------QLIDDMPMPANAVILGALLGGCKIHRNAELAEH 463

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           V+   I  +  +   + ++   YS  G   DA  L   M ++
Sbjct: 464 VLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEK 505



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 6/187 (3%)

Query: 456 LVKPNAFTLSCALMACARLA-ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           L  P+  T   AL + +RL   LR G Q+HA  L+       P V   L+ +Y+R G + 
Sbjct: 65  LPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHT-NPHVLTSLLTLYARCGLLH 123

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHG-LGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            A+ VFD +   + VSWT+L+T Y   G L +  H A +     G+ PD  T + +L AC
Sbjct: 124 RAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAF-ANGMRPDSFTAVRVLTAC 182

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +    +  G   + +  +E GI+         VDL  +   + +A E+ + M  +   + 
Sbjct: 183 ARVADLATGETVWRAAEQE-GIAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RDKDAVA 240

Query: 634 WVALLNG 640
           W A++ G
Sbjct: 241 WGAMVGG 247


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 354/636 (55%), Gaps = 79/636 (12%)

Query: 205 VSWNTIVAAYAQS-GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG 263
           V+WN+++A  ++  G  +    LF ++      + D VS  N + +C     + R     
Sbjct: 7   VTWNSVLAGMSKKRGKLKEAQELFVKIP-----EPDAVSY-NTMLSC-----YVRNSN-- 53

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            ME A+  FE M +KD  SWN M+TG+++    + A  LF  M  +NV    VTW+A+I+
Sbjct: 54  -MERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMIS 108

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           GY + G    AL +F +  F     +VV   ++++G                        
Sbjct: 109 GYVECGDLDSALKLFEKAPF----KSVVAWTAMITG------------------------ 140

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                            Y K   + +A  +F+ +  KN  + TW  MI  Y +N  A D 
Sbjct: 141 -----------------YMKLGRIGLAERLFEKMPEKN--LVTWNAMIAGYIENHRAEDG 181

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF----- 498
           + LF  M      ++PN+ TLS AL+ C+ L+AL+ GRQ+H  V ++      P      
Sbjct: 182 VKLFRTMVGFG--IQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS------PLCDDTT 233

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
               LI MY + G ++    +F  + +R+VV+W ++++GY  HG G KA   FD+M ++G
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG 293

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + PD +TF+ +L AC+H+G  D G+KYF SM+K++G+ A+ +HY C+VDLLGRA +L EA
Sbjct: 294 MKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEA 353

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
           V+LIE MP +P   ++  LL  CRIH N E+ E A+ +LL L+      Y  L+N+YA  
Sbjct: 354 VDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAAT 413

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
            RW  VAR+R  MK   V K PG SW++ K     F  GD+ HP+   I+  L  L +++
Sbjct: 414 KRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKM 473

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  GYVP   FALHDV +E+K  LL  HSEKLA+AYG++   PGTPIR+ KNLR+CGDCH
Sbjct: 474 KLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCH 533

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            AI +IS I   EII+RD+ RFHHFK+G C+C  YW
Sbjct: 534 RAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 168/340 (49%), Gaps = 31/340 (9%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N +++ Y R   +  A+  F++M    I D  SWNT++  +AQ+   +    LF  M   
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDM---PIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTK 98

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
                      N ++  A +  +    +CG ++ A K+FE+   K VV+W AM+TGY ++
Sbjct: 99  -----------NVVTWNAMISGYV---ECGDLDSALKLFEKAPFKSVVAWTAMITGYMKL 144

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G    A  LF+KM ++    N+VTW+A+IAGY +     + + +FR M   G++PN  TL
Sbjct: 145 GRIGLAERLFEKMPEK----NLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTL 200

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S L GC+ + AL LG++ H    K  L       DD     +LI MY KC  ++    +
Sbjct: 201 SSALLGCSELSALQLGRQVHQLVCKSPLC------DDTTAGTSLISMYCKCGVLEDGWKL 254

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F  +    RDV TW  MI  Y+Q+G    AL LF +M +  K +KP+  T    LMAC  
Sbjct: 255 F--VQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIE--KGMKPDWITFVAVLMACNH 310

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
                 G +    + ++   +  P    C++D+  R+G +
Sbjct: 311 AGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKL 350



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 44/268 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA---CGELPSSRCGSSVHA 159
           WN +I    + +  D A  LFL M  +    +  T+  ++     CG+L S+        
Sbjct: 72  WNTMITGFAQNQQMDKARDLFLIMPTK----NVVTWNAMISGYVECGDLDSAL------K 121

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +   + F S V    A++  Y +   +  A +LF++M +    ++V+WN ++A Y ++  
Sbjct: 122 LFEKAPFKS-VVAWTAMITGYMKLGRIGLAERLFEKMPEK---NLVTWNAMIAGYIENHR 177

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------ 261
           AE G+ LF  M G   +Q +  +L +AL  C+ L     G+Q                  
Sbjct: 178 AEDGVKLFRTMVG-FGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGT 236

Query: 262 --------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG++E+  K+F ++  +DVV+WNAM++GY++ G  + A  LF +M ++ +K 
Sbjct: 237 SLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKP 296

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           + +T+ AV+      G     +  F  M
Sbjct: 297 DWITFVAVLMACNHAGFTDLGVKYFHSM 324



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 23/255 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   +     ++  +LF  M+  G  P+  T    L  C EL + + G  VH ++C
Sbjct: 165 WNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVC 224

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S    +     +L++MY +C  L    +LF ++ +    D+V+WN +++ YAQ G+ + 
Sbjct: 225 KSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRR---DVVTWNAMISGYAQHGEGKK 281

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
            L LF  M  +  ++ D ++ V  L AC            G  +   K F  M      V
Sbjct: 282 ALGLFDEMI-EKGMKPDWITFVAVLMAC---------NHAGFTDLGVKYFHSMAKDYGLV 331

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  MV    R G   +A  L +KM     K +   +  ++   A R H +  +  
Sbjct: 332 AKPDHYTCMVDLLGRAGKLVEAVDLIEKM---PFKPHAAVFGTLLG--ACRIHKNTEMAE 386

Query: 338 FRQMQFCGLEPNVVT 352
           F   +   L+P   T
Sbjct: 387 FASQKLLNLDPASAT 401


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/587 (38%), Positives = 333/587 (56%), Gaps = 42/587 (7%)

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           V D      ++  Y+      DA  LF KM   +     V W+ +I GY Q GH  +AL 
Sbjct: 153 VDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDA----VAWNMIIDGYCQNGHYDDALR 208

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F  M+   ++P+ V L ++LS C   G L  G+  H +        D  +  D  +  A
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFV------KDNGYAIDSHLQTA 262

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVATW 427
           LI+MYA C ++D+AR ++D ++ K+                             RD+  W
Sbjct: 263 LINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCW 322

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           + MI  Y+++    +AL LF +M Q+  +  P+  T+   + AC+ + AL     IH YV
Sbjct: 323 SAMISGYAESDQPQEALKLFDEMLQKRSV--PDQITMLSVISACSHVGALAQANWIHTYV 380

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
            R+ +   +  V N LIDMY++ G++  AR VF+N+ ++NV+SW+S++  + MHG  D A
Sbjct: 381 DRSGFGRALS-VNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSA 439

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F +M++  + P+GVTF+ +LYAC H+G+V++G K F SM  E GIS   EHY C+VD
Sbjct: 440 IKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVD 499

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           L  RAN L +A+ELIE MP  P  IIW +L++ C++H   ELGE AA RLLELE + DG+
Sbjct: 500 LYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGA 559

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
             +LSNIYA   RW DV  IR  M + G+ K    S ++       F + DR H QS +I
Sbjct: 560 LVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEI 619

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
           YE L  +V ++K +GY P TS  L D+++E+K +L+  HSEKLA+ YG+++    + IRI
Sbjct: 620 YEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRI 679

Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLRIC DCHS +  +S +   EI++RD  RFHH   G C+C+ YW
Sbjct: 680 VKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 254/509 (49%), Gaps = 59/509 (11%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGWHPDEYTFPFVLKACGELPSSRC 153
           P+P + F  N L+R   R   P+    L+  +     +  D ++FP +LKA  ++ +   
Sbjct: 81  PNPHTHFS-NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNH 139

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H +    GF  + F+   L+AMYA C  +  AR LFD+M  P   D V+WN I+  
Sbjct: 140 GLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHP---DAVAWNMIIDG 196

Query: 214 YAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGK------------ 260
           Y Q+G  +  L LF  M + D+K   D V L   LSAC   G  S G+            
Sbjct: 197 YCQNGHYDDALRLFEDMRSSDMK--PDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254

Query: 261 --------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                          CG M+ A+K+++ +  K ++   AM++GY+++G  +DA  +F +M
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM 314

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
               ++ ++V WSA+I+GYA+     EAL +F +M      P+ +T++S++S C+ VGAL
Sbjct: 315 ----IERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGAL 370

Query: 367 LLGKETHCYTIK----RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
                 H Y  +    R LSV+          NALIDMYAKC ++  AR +F+ +  KN 
Sbjct: 371 AQANWIHTYVDRSGFGRALSVN----------NALIDMYAKCGNLVKAREVFENMPRKN- 419

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
            V +W+ MI +++ +G A+ A+ LF +M + +  ++PN  T    L AC     +  G +
Sbjct: 420 -VISWSSMINAFAMHGNADSAIKLFRRMKEVN--IEPNGVTFIGVLYACGHAGLVEEGEK 476

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           + + ++             C++D+Y R+  +  A  + + +    NV+ W SLM+   +H
Sbjct: 477 LFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVH 536

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G  +   +A  ++ +  L PD    LV+L
Sbjct: 537 GEAELGEFAAKRLLE--LEPDHDGALVVL 563


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/691 (34%), Positives = 385/691 (55%), Gaps = 24/691 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N LI    +    ++A  +F +M   G  PD  T   +L AC  L   + G+ +H+ + 
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G  S+  +  +L+ +Y +C  +  A  +F+   +    ++V WN ++ A+ Q  D   
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT---NVVLWNLMLVAFGQINDLAK 328

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF +M     ++ +  +    L  C        G+Q   +   K  FE     D+  
Sbjct: 329 SFELFCQMQA-AGIRPNQFTYPCILRTCTCTREIDLGEQIHSLS-VKTGFE----SDMYV 382

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              ++  YS+ G  E A  + + +++++V    V+W+++IAGY Q     +AL  F++MQ
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDV----VSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            CG+ P+ + L S +SGCA + A+  G + H       + V G +  D+ + NAL+++YA
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHAR-----IYVSG-YSGDVSIWNALVNLYA 492

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  +  A   F+ I  +++D  TW  ++  ++Q+G   +AL +F +M Q    VK N F
Sbjct: 493 RCGRIREAFSSFEEI--EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG--VKHNVF 548

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T   AL A A LA ++ G+QIHA V++  +      V N LI +Y + G  + A++ F  
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETE-VGNALISLYGKCGSFEDAKMEFSE 607

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSW +++T    HG G +A   FDQM+KEG+ P+ VTF+ +L ACSH G+V++G
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YF SMS E+GI  R +HYAC++D+ GRA +LD A + IE MP+    ++W  LL+ C+
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H N+E+GE AA  LLELE     SY LLSN YA   +W +  ++R +M+  GV+K PG 
Sbjct: 728 VHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGR 787

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ K     FFVGDR HP +++IY  LA +  R+  +GY  +     HD + E +   
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPT 847

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
              HSEKLA+ +G+++  P  P+R+ KNLR+
Sbjct: 848 DLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  226 bits (575), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 171/566 (30%), Positives = 276/566 (48%), Gaps = 32/566 (5%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           P     LF    R+        F   L+AC G     +    +HA   + G      V N
Sbjct: 22  PAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGN 81

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
            L+ +Y++   +  AR++F+E+      D VSW  +++ YAQ+G  E  L L+ +M    
Sbjct: 82  LLIDLYSKNGLVLPARRVFEEL---SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAG 138

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
            V    V L + LS+C     +++G+         + ++     ++   NA++T Y R G
Sbjct: 139 VVPTPYV-LSSVLSSCTKAELFAQGRLI-----HAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           SF  A  +F  M   +     VT++ +I+G+AQ GHG  AL++F +MQF GL P+ VT+ 
Sbjct: 193 SFRLAERVFCDMPHRDT----VTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SLL+ CAS+G L  G + H Y  K  +S       D ++  +L+D+Y KC  V+ A V+F
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGIS------SDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           ++    N  V  W +M+ ++ Q      +  LF QM  Q   ++PN FT  C L  C   
Sbjct: 303 NSSDRTN--VVLWNLMLVAFGQINDLAKSFELFCQM--QAAGIRPNQFTYPCILRTCTCT 358

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             +  G QIH+  ++  +E  + +V+  LIDMYS+ G ++ AR V + LK+++VVSWTS+
Sbjct: 359 REIDLGEQIHSLSVKTGFESDM-YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + GY  H     A  AF +M+K G+ PD +     +  C+    + QGL+    +    G
Sbjct: 418 IAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-G 476

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
            S     +  +V+L  R  R+ EA    E +      I W  L++G    A   L E A 
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLVSG---FAQSGLHEEAL 532

Query: 655 NRLLELESE--KDGSYTLLSNIYANA 678
              + ++    K   +T +S + A+A
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASA 558



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 163/592 (27%), Positives = 279/592 (47%), Gaps = 30/592 (5%)

Query: 56  IHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH + + + L    +  + LI  Y  +    PA  + + +S        W A++    + 
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSAR--DNVSWVAMLSGYAQN 121

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
            L + A  L+ QM R G  P  Y    VL +C +      G  +HA     GF S +FV 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           NA++ +Y RC +   A ++F +M      D V++NT+++ +AQ G  E  L +F  M   
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHR---DTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
             +  D V++ + L+ACASLG   +G Q         +F+     D +   +++  Y + 
Sbjct: 239 -GLSPDCVTISSLLAACASLGDLQKGTQL-----HSYLFKAGISSDYIMEGSLLDLYVKC 292

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  E A  +F      + + NVV W+ ++  + Q     ++ ++F QMQ  G+ PN  T 
Sbjct: 293 GDVETALVIF----NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
             +L  C     + LG++ H       LSV      D+ V   LIDMY+K   ++ AR +
Sbjct: 349 PCILRTCTCTREIDLGEQIHS------LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRV 402

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
            + +  K +DV +WT MI  Y Q+    DALA F +M  Q   + P+   L+ A+  CA 
Sbjct: 403 LEML--KEKDVVSWTSMIAGYVQHECCKDALAAFKEM--QKCGIWPDNIGLASAISGCAG 458

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           + A+R G QIHA +  + Y   +  + N L+++Y+R G I  A   F+ ++ ++ ++W  
Sbjct: 459 INAMRQGLQIHARIYVSGYSGDVS-IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           L++G+   GL ++A   F +M + G+  +  TF+  L A ++   + QG K   +   + 
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQG-KQIHARVIKT 576

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           G S   E    ++ L G+    ++A      M  E   + W  ++  C  H 
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 350/588 (59%), Gaps = 29/588 (4%)

Query: 255 TWSRGKQC----GMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           T+S   +C    G ++E K+V E +  K     +   N ++  Y +    E+A  LF +M
Sbjct: 57  TYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM 116

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            + NV    V+W+ +I+ Y+ + +  +AL     M   G+ PN+ T  S+L  C  +  L
Sbjct: 117 PERNV----VSWTTMISAYSNKLND-KALKCLILMFREGVRPNMFTYSSVLRACDGLPNL 171

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
              ++ HC  IK  L        D+ V +ALID+Y+K   +D A  +FD +    RD+  
Sbjct: 172 ---RQLHCGIIKTGLE------SDVFVRSALIDVYSKWSDLDNALGVFDEMP--TRDLVV 220

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  +IG ++QN   N+AL LF +M +   L   +  TL+  L AC  LA L  GRQ+H +
Sbjct: 221 WNSIIGGFAQNSDGNEALNLFKRMKRAGFLA--DQATLTSVLRACTGLALLELGRQVHVH 278

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           VL+   ++++    N LIDMY + G ++ A   F  + +++V+SW++++ G   +G   +
Sbjct: 279 VLKFDQDLIL---NNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQ 335

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F+ M++ G  P+ +T L +L+ACSH+G+V++G  YF SM K FG+    EHY C++
Sbjct: 336 ALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLI 395

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DLLGRA RLDEAV+LI  M  EP  + W  LL  CR+H NV+L   AA +++ELE E  G
Sbjct: 396 DLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAG 455

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
           +Y LLSNIYAN  RW+DVA +R  M + G++K PGCSW++  +    F +GD +HP+ ++
Sbjct: 456 TYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEE 515

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
           I + L  L++R+  +GYVP T+F L D++ E+K D L  HSEKLA+ +G++  +    +R
Sbjct: 516 IVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVR 575

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I KNLRICGDCH     +S + +  I++RD  R+HHF++G C+C  YW
Sbjct: 576 IRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 227/459 (49%), Gaps = 44/459 (9%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A R    M R G   D  T+  ++K C    + + G  VH  I   G++  +FV N L+ 
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ--SGDAEGGLMLFARMTGDVKV 236
           MY + + L  A  LFDEM +    ++VSW T+++AY+   +  A   L+L  R      V
Sbjct: 99  MYVKFNLLEEAEDLFDEMPER---NVVSWTTMISAYSNKLNDKALKCLILMFREG----V 151

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           + +  +  + L AC  L    R   CG+++   +        DV   +A++  YS+    
Sbjct: 152 RPNMFTYSSVLRACDGLPNL-RQLHCGIIKTGLE-------SDVFVRSALIDVYSKWSDL 203

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           ++A  +F +M       ++V W+++I G+AQ   G+EAL++F++M+  G   +  TL S+
Sbjct: 204 DNALGVFDEMPTR----DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSV 259

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           L  C  +  L LG++ H + +K           DL++ NALIDMY KC S++ A   F  
Sbjct: 260 LRACTGLALLELGRQVHVHVLK--------FDQDLILNNALIDMYCKCGSLEDANSAFSR 311

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +  K  DV +W+ M+   +QNG +  AL LF  M  ++   +PN  T+   L AC+    
Sbjct: 312 MVEK--DVISWSTMVAGLAQNGYSRQALELFESM--KESGSRPNYITVLGVLFACSHAGL 367

Query: 477 LRFGRQIHAYVLRNQYEM--LIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVSW 531
           +  G     Y  R+  ++  + P   +  CLID+  R+G +D A +++ +   + + V+W
Sbjct: 368 VEKG----WYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTW 423

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            +L+    +H   D A +A  ++ +  L P+     +LL
Sbjct: 424 RTLLGACRVHRNVDLAIYAAKKIIE--LEPEDAGTYILL 460



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 138/301 (45%), Gaps = 35/301 (11%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  YV  N    A  L   +     +V  W  +I  A   +L D A +  + M R G  
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMPER--NVVSWTTMIS-AYSNKLNDKALKCLILMFREGVR 152

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ +T+  VL+AC  LP+ R    +H  I  +G +S+VFV +AL+ +Y++   L  A  +
Sbjct: 153 PNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGV 209

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDEM      D+V WN+I+  +AQ+ D    L LF RM        D  +L + L AC  
Sbjct: 210 FDEMPTR---DLVVWNSIIGGFAQNSDGNEALNLFKRMK-RAGFLADQATLTSVLRACTG 265

Query: 253 LGTWSRGKQ------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
           L     G+Q                        CG +E+A   F RM  KDV+SW+ MV 
Sbjct: 266 LALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVA 325

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLE 347
           G ++ G    A  LF+ M++   + N +T   V+   +  G   +    FR M +  G++
Sbjct: 326 GLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVD 385

Query: 348 P 348
           P
Sbjct: 386 P 386



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 15/260 (5%)

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A +  +   H A+     M+  G+  + +T   L+  C++ GA+  GK  H +   +   
Sbjct: 28  ANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCK--- 84

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
             G  P  + V+N L++MY K   ++ A  +FD +  +N  V +WT MI +YS N   + 
Sbjct: 85  --GYEP-KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERN--VVSWTTMISAYS-NKLNDK 138

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           AL     MF++   V+PN FT S  L AC  L  L   RQ+H  +++   E  + FV + 
Sbjct: 139 ALKCLILMFREG--VRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDV-FVRSA 192

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LID+YS+  D+D A  VFD +  R++V W S++ G+  +  G++A   F +M++ G   D
Sbjct: 193 LIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLAD 252

Query: 563 GVTFLVLLYACSHSGMVDQG 582
             T   +L AC+   +++ G
Sbjct: 253 QATLTSVLRACTGLALLELG 272


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 340/553 (61%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  YS   S ++A  +F K R   +      ++A+    +  GHG E L+++R+M   G
Sbjct: 111 LINMYSFFDSIDNARKVFDKTRNRTI----YVYNALFRALSLAGHGEEVLNMYRRMNSIG 166

Query: 346 LEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  +  T   +L  C +    V  L  G+E H + ++     DG     + ++  L+DMY
Sbjct: 167 IPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRH--GYDGY----VHIMTTLVDMY 220

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK   V  A  +F+ +  KN  V +W+ MI  Y++NG A +AL LF ++  + + + PN+
Sbjct: 221 AKFGCVSNASCVFNQMPVKN--VVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNS 278

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  GR IH Y+LR   + ++P V + L+ MY+R G ++  + VFD
Sbjct: 279 VTMVSVLQACAALAALEQGRLIHGYILRKGLDSILP-VISALVTMYARCGKLELGQRVFD 337

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            + +R+VVSW SL++ YG+HG G KA   F++M   G+ P  ++F+ +L ACSH+G+VD+
Sbjct: 338 QMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDE 397

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G   F+SM    GI    EHYAC+VDLLGRANRL+EA ++IE M +EP P +W +LL  C
Sbjct: 398 GKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSC 457

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A+ RL +LE    G+Y LL++IYA AG W  V R++ L++  G++K PG
Sbjct: 458 RIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPG 517

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW++ K    +F   D  +P+ ++++ +L  L   +K  GYVPQT   L+D+   EK  
Sbjct: 518 RSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKER 577

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLA+A+G++ ++ G  IRITK+LR+C DCHS   FIS   N EI++RD NRFH
Sbjct: 578 IVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFH 637

Query: 822 HFKEGSCTCKGYW 834
           HF++G C+C  YW
Sbjct: 638 HFRDGVCSCGDYW 650



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 168/365 (46%), Gaps = 48/365 (13%)

Query: 26  IKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSH 80
           ++L S+   P      LL+  C    SL     +H+ ++       P   + LI  Y   
Sbjct: 59  LELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFF 118

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
           ++   A  +  +      +++ +NAL R        +    ++ +M   G   D +T+ +
Sbjct: 119 DSIDNARKVFDKTRNR--TIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTY 176

Query: 141 VLKACGELPSSRC-------GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           VLKAC    +S C       G  +HA I   G+D  V +   L+ MYA+   +S A  +F
Sbjct: 177 VLKAC---VASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVF 233

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK-VQGDGVSLVNALSACAS 252
           ++M    + ++VSW+ ++A YA++G A   L LF  +  + + +  + V++V+ L ACA+
Sbjct: 234 NQM---PVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAA 290

Query: 253 LGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAM 286
           L    +G+                          +CG +E  ++VF++M  +DVVSWN++
Sbjct: 291 LAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSL 350

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-G 345
           ++ Y   G  + A  +F++M    V+ + +++ +V+   +  G   E   +F  M    G
Sbjct: 351 ISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHG 410

Query: 346 LEPNV 350
           + P+V
Sbjct: 411 ICPSV 415



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 18/240 (7%)

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNA--FTLSCALMACARLAALRFGRQIHAYV 487
           +I S  + G    AL L          ++PN    T    +++C    +L   +++H ++
Sbjct: 45  LIQSLCKQGNLTQALELLS--------LEPNPAQHTYELLILSCTHQNSLLDAQRVHRHL 96

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           L N ++   PF+A  LI+MYS    ID AR VFD  + R +  + +L     + G G++ 
Sbjct: 97  LENGFDQ-DPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEV 155

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHS----GMVDQGLKYFDSMSKEFGISARAEHYA 603
              + +M   G+  D  T+  +L AC  S     ++++G +    + +  G         
Sbjct: 156 LNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRH-GYDGYVHIMT 214

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
            +VD+  +   +  A  +   MP++   + W A++  C          L   R L LE++
Sbjct: 215 TLVDMYAKFGCVSNASCVFNQMPVKNV-VSWSAMI-ACYAKNGKAFEALELFRELMLETQ 272


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/705 (36%), Positives = 388/705 (55%), Gaps = 67/705 (9%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P E  F  + +     P  R   +VH+ I       N  +   LM  YA    ++ AR++
Sbjct: 38  PQETVF-LLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKV 96

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDE+ +  +  I   N ++ +Y  +G    G+ +F  M G   V+ D  +    L AC+ 
Sbjct: 97  FDEIPERNVIII---NVMIRSYVNNGFYGEGVKVFGTMCG-CNVRPDHYTFPCVLKACSC 152

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
            GT   G++  +   A KV        +   N +V+ Y + G   +A  +  +M + +V 
Sbjct: 153 SGTIVIGRK--IHGSATKVG---LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV- 206

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
              V+W++++ GYAQ     +AL+V R+M+   +  +  T+ SLL   ++          
Sbjct: 207 ---VSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--------- 254

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
              T + V+ V               DM+ K                  + + +W VMIG
Sbjct: 255 ---TTENVMYVK--------------DMFFKMG---------------KKSLVSWNVMIG 282

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y +N    +A+ L+ +M + D   +P+A +++  L AC   +AL  G++IH Y+ R + 
Sbjct: 283 VYMKNAMPVEAVELYSRM-EADGF-EPDAVSITSVLPACGDTSALSLGKKIHGYIERKK- 339

Query: 493 EMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
             LIP   + N LIDMY++ G ++ AR VF+N+K R+VVSWT++++ YG  G G  A   
Sbjct: 340 --LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVAL 397

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +++  GL PD + F+  L ACSH+G++++G   F  M+  + I+ R EH AC+VDLLG
Sbjct: 398 FSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLG 457

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA ++ EA   I+ M MEP   +W ALL  CR+H++ ++G LAA++L +L  E+ G Y L
Sbjct: 458 RAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVL 517

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSNIYA AGRW++V  IR++MK  G+KK PG S V+      TF VGDR+HPQS +IY  
Sbjct: 518 LSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRE 577

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP-----GTPI 785
           L  LV+++K +GYVP +  ALHDV++E+K   L  HSEKLA+ + ++ T          I
Sbjct: 578 LDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTI 637

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           RITKNLRICGDCH A   IS I + EII+RD+NRFH F+ G C+C
Sbjct: 638 RITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/520 (29%), Positives = 243/520 (46%), Gaps = 67/520 (12%)

Query: 56  IHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           +H +II+++L         L+ AY S    + A  +   I     +V   N +IR  V  
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPER--NVIIINVMIRSYVNN 118

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
                  ++F  M      PD YTFP VLKAC    +   G  +H      G  S +FV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N L++MY +C  LS AR + DEM +    D+VSWN++V  YAQ+   +  L +   M   
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRR---DVVSWNSLVVGYAQNQRFDDALEVCREMES- 234

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           VK+  D  ++ + L A ++  T +       +   K +F +M  K +VSWN M+  Y + 
Sbjct: 235 VKISHDAGTMASLLPAVSNTTTEN-------VMYVKDMFFKMGKKSLVSWNVMIGVYMK- 286

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
                               N +   AV              +++ +M+  G EP+ V++
Sbjct: 287 --------------------NAMPVEAV--------------ELYSRMEADGFEPDAVSI 312

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L  C    AL LGK+ H Y  ++ L        +L++ NALIDMYAKC  ++ AR +
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKL------IPNLLLENALIDMYAKCGCLEKARDV 366

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +  K+RDV +WT MI +Y  +G   DA+ALF ++  QD  + P++      L AC+ 
Sbjct: 367 FENM--KSRDVVSWTAMISAYGFSGRGCDAVALFSKL--QDSGLVPDSIAFVTTLAACSH 422

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVS 530
              L  GR    + L   +  + P + +  C++D+  R+G +  A R + D   + N   
Sbjct: 423 AGLLEEGRS--CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERV 480

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           W +L+    +H   D    A D++ +  LAP+   + VLL
Sbjct: 481 WGALLGACRVHSDTDIGLLAADKLFQ--LAPEQSGYYVLL 518


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/780 (32%), Positives = 401/780 (51%), Gaps = 74/780 (9%)

Query: 71   SHLIAAYVSHNAPSPALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
            S L++ +  +     AL  L+ +       +V  WN +I   V+    ++A  +F +M+ 
Sbjct: 288  SALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLW 347

Query: 129  RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
                P+  T   +L AC  L + R G ++H +    G   NV+V  +++ MY++C +  Y
Sbjct: 348  YPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDY 407

Query: 189  ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
            A ++F +       +   WN ++AAY   G  E  L L   M      Q DG        
Sbjct: 408  AEKVFXKAENK---NTAMWNEMIAAYVNEGKVEDALGLLRSM------QKDG-------- 450

Query: 249  ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                   W                      DV+++N +++G++R G    A  L  +M Q
Sbjct: 451  -------WK--------------------PDVITYNTILSGHARNGLKTQAXELLSEMVQ 483

Query: 309  ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF------------CGLEPNVVTLVSL 356
              +K NVV+++ +I+G+ Q G  +EAL VFR MQ               + PN +T+   
Sbjct: 484  MGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGA 543

Query: 357  LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
            L  CA +     GKE H YT++     +G  P+ + V +AL+DMYAKC  +D A  +F  
Sbjct: 544  LPACADLNLWCQGKEIHGYTLR-----NGFEPN-IFVSSALVDMYAKCHDMDSANKVFFR 597

Query: 417  IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
            I    R+  +W  ++  Y  N    +AL LF +M  +   ++P++ T      AC  +AA
Sbjct: 598  I--DGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEG--LQPSSITFMILFPACGDIAA 653

Query: 477  LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
            +RFGR +H Y  + Q + L   + + LIDMY++ G I  A+ VFD+  +++V  W ++++
Sbjct: 654  IRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMIS 713

Query: 537  GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
             + +HG+   A   F QM   G+ PD +TF+ LL AC+  G+V++G KYF+SM   +G++
Sbjct: 714  AFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVA 773

Query: 597  ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
            A  EHY C+V +LG A  LDEA++ I  MP  P   +W  LL  CR+H+N E+GE AA  
Sbjct: 774  ATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKA 833

Query: 657  LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
            L ELE +   +Y LLSNIY ++G W     +RS M+   +     CS++       TF  
Sbjct: 834  LFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHXCTFKG 893

Query: 717  GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE--HSEKLALAY 774
            G+ +HP+ ++I E    L ++++  GY P         DDEEK    F   H+EKLA+ +
Sbjct: 894  GESSHPELEEILETWDXLARKMELSGYFPLDPV----FDDEEKELDPFSCLHTEKLAICF 949

Query: 775  GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            GI+++    P+ ++KN+R+C DCH++   IS I   EI ++D   +HH K+G C C+  W
Sbjct: 950  GIISSNXYRPVHVSKNIRMCIDCHTSAKLISKIDGREIFVKDVCFYHHMKDGICXCQDRW 1009



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 182/695 (26%), Positives = 292/695 (42%), Gaps = 136/695 (19%)

Query: 8   FPLLKSK----TPLTL---------NHLFTNIKLFSVTTT-----PC-IKITSLLLRQCK 48
           FPL KSK    TP  +         NH+     L S   T     P  I  +  LL +C 
Sbjct: 35  FPLPKSKFRVSTPRIIGFKHYSTVSNHIHPQTLLPSFVDTLTNSSPTEISDSISLLNRCS 94

Query: 49  SLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSHN-APSPALSLLQRISPSPFSVFWWN 104
           +L++   IH +++  N      S    L+  Y  +  +   A  LL  I     +V  + 
Sbjct: 95  TLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNR--TVPAYA 152

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
           ALIR   R    D  F  F  M+  G  PD+Y  P +LKAC  +   R G  VH  +   
Sbjct: 153 ALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRK 212

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
             +S+VFV NAL+  Y+ C  L  +R +F  M +    D+VSW  +++AY + G      
Sbjct: 213 SVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQER---DVVSWTALISAYMEEG------ 263

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK----DV 280
                                                  + +EAK +F  M++     D+
Sbjct: 264 ---------------------------------------LXDEAKHIFHLMQLDGVKPDL 284

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           +SW+A+++G++R G  + A    ++M +  ++  V +W+ +I+G  Q G+  +ALD+F +
Sbjct: 285 ISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSR 344

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M +   +PN++T+ S+L  C  + AL LGK  H    K  +        ++ V  ++IDM
Sbjct: 345 MLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIV------GNVYVEGSVIDM 398

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y+KC S D A  +F     +N++ A W  MI +Y   G   DAL L   M Q+D   KP+
Sbjct: 399 YSKCGSYDYAEKVF--XKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSM-QKDGW-KPD 454

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T +  L   AR              L+ Q   L+                   + +V 
Sbjct: 455 VITYNTILSGHARNG------------LKTQAXELL-------------------SEMVQ 483

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE------------GLAPDGVTFLV 568
             LK  NVVS+  L++G+   GL  +A   F  M+               + P+ +T   
Sbjct: 484 MGLKP-NVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITG 542

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
            L AC+   +  QG K     +   G        + +VD+  + + +D A ++   +   
Sbjct: 543 ALPACADLNLWCQG-KEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGR 601

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
            T + W AL+ G   + N +  E A    LE+  E
Sbjct: 602 NT-VSWNALMAG---YINNKQPEEALKLFLEMLGE 632


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/684 (34%), Positives = 374/684 (54%), Gaps = 60/684 (8%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           M+ R   +  ARQ+FD +      D  SW  +++ YA+SGD      +F RM        
Sbjct: 1   MFGRLGCVERARQIFDAIADR---DSFSWGIMLSIYARSGDLSNAKGVFDRMPR------ 51

Query: 239 DGVSLVNALSACASLGTW----SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                        SLG+W    S     G  EEAK +F+ M+ +D+++W  M+T  +   
Sbjct: 52  ------------WSLGSWTALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFS 99

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           + EDA   F +M + ++    V W+A++A  A+RG    A + F QM     E N+ +  
Sbjct: 100 NIEDAKYHFDQMPERDL----VAWTAMLAANAERGQMENARETFDQMP----ERNLFSWT 151

Query: 355 SLLSGCASVG---------------------ALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           SLLS     G                     A+L G       ++   + D     DL+ 
Sbjct: 152 SLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIA 211

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             A++  YA    +   R +F  +    RD+ +W  M+ +  +N    ++  LF +M + 
Sbjct: 212 WTAMLSAYAFNGHLRYTREIFQRM--PERDLISWATMVAALVENDLLEESKELFDRMPRH 269

Query: 454 DKLVK---PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
             L K   PN  T    L AC+ L AL  GR+IHA V    ++  +  V+N L++ Y R 
Sbjct: 270 CALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDL-VVSNALVNFYGRC 328

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G +  A++VFD +++R+V+SW+S+++ +   G  D+A   + +M  EG  PD + F+ +L
Sbjct: 329 GALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVL 388

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
           +ACS+SG+V+    +F S+  +  +    EHYAC+VD+LGRA +L +A +L+  MP  P 
Sbjct: 389 FACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPG 448

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
           P++++ +L+ C+++ +VE GE AA  + EL+ E    Y  L+NIY+ A R KD ARIR L
Sbjct: 449 PLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKL 508

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           M+  G+KK+PGCSW++  +    F  GD+ HPQ  +IY  +  L +++K  GY   T   
Sbjct: 509 MEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVV 568

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           L DV+++EK +LL+ HSEKLA+A+G+++T PG P+RI KNLR+C DCH+A   IS +   
Sbjct: 569 LQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGR 628

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EI++RD+NRFHHF+ G C+C  YW
Sbjct: 629 EILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 120/269 (44%), Gaps = 26/269 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMR-----RGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           W  ++   V   L + +  LF +M R     +G  P+  TF  +L AC  L +   G  +
Sbjct: 243 WATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKI 302

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           HA +   GFD+++ V NAL+  Y RC  L  A+ +FD M +    D++SW+++++A+AQ 
Sbjct: 303 HAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRR---DVISWSSMISAFAQR 359

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +  + L+ RM  +  +  D +  ++ L AC++ G          + EA   F R  V
Sbjct: 360 GRVDEAMELYHRMLSEGTLP-DDIIFISVLFACSNSG----------VVEASGDFFRSIV 408

Query: 278 KD------VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            D      +  +  MV    R G   DA  L + M      L  +T  +    Y     G
Sbjct: 409 GDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERG 468

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
             A +V  ++      P  +TL ++ S  
Sbjct: 469 EAAAEVVFELDPENSSP-YITLANIYSAA 496


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/769 (33%), Positives = 414/769 (53%), Gaps = 32/769 (4%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           ++L+  Y        A  L  ++S S  ++  +N+LI   V++   D    LF +  R G
Sbjct: 98  NNLLNMYCKCGDTRSADKLFDKMSKS--NIVTYNSLISGYVQMSNLDKVMILFDKARRLG 155

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              D+YT    L AC +  +   G  +H +I   G  S V + N+L+ MY++C  + YAR
Sbjct: 156 LKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYAR 215

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD        D VSWN+++A Y Q+G  E  L +  +M  +  +  +  +L +AL AC
Sbjct: 216 ILFD---HSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQN-GLAFNTYTLGSALKAC 271

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
           +S   ++  K  G M     +   + + DVV   A++  Y++ GS +DA  +F +M    
Sbjct: 272 SS--NFNGCKMFGTMLHDHAIKLGLHL-DVVVGTALLDMYAKTGSLDDAIQIFDQM---- 324

Query: 311 VKLNVVTWSAVIAGYAQRGH-----GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           V  NVV ++A++AG  Q+        ++AL++F +M+ CG++P++ T  SLL  C  V  
Sbjct: 325 VDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVED 384

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
               K+ H    K  L        D  + + LID+Y+   S+  A + F++I   N  + 
Sbjct: 385 FKFAKQVHALMCKNGL------LSDEYIGSILIDLYSVLGSMMDALLCFNSI--HNLTIV 436

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
             T MI  Y QNG    AL+LF ++   ++  KP+ F  S  + +CA +  LR G QI  
Sbjct: 437 PMTAMIXGYLQNGEFESALSLFYELLTYEE--KPDEFIXSTIMSSCANMGMLRSGEQIQG 494

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           +  +        F  N  I MY++SGD+  A + F  ++  ++VSW++++     HG   
Sbjct: 495 HATKVGISRFTIF-QNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAM 553

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F+ M+  G+ P+   FL +L ACSH G+V++GL+YFD+M K++ +    +H  C+
Sbjct: 554 EALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCV 613

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA RL +A  LI  +  E  P++W ALL+ CRIH +    +  A +++ELE    
Sbjct: 614 VDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEPLAS 673

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
            SY LL NIY +AG     +++R+LM+   +KK PG SW+Q  +   +F  GDR+H  S 
Sbjct: 674 ASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDRSHKNSG 733

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +IY  L  ++   K +          + ++ E   ++ + HSEKLA+A+G+L  +   P+
Sbjct: 734 QIYAKLDEMLATTKRLD--SAKDILGYKIEHEHLTNVNY-HSEKLAVAFGVLYLSESAPV 790

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+ KNLRIC DCH  +   S++   E+I+RDS RFHHFK+GSC+C  YW
Sbjct: 791 RVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHHFKDGSCSCGDYW 839



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 149/318 (46%), Gaps = 21/318 (6%)

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
           V  V L+      G L  GK  H + IK       S    L + N L++MY KC     A
Sbjct: 60  VDYVKLVQSATKTGKLNHGKLVHSHMIKT------SFRPCLFLQNNLLNMYCKCGDTRSA 113

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
             +FD ++  N  + T+  +I  Y Q    +  + LF +  +    +K + +T + AL A
Sbjct: 114 DKLFDKMSKSN--IVTYNSLISGYVQMSNLDKVMILFDKARRLG--LKLDKYTCAGALTA 169

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           C++   L  G+ IH  +L       +  + N LIDMYS+ G +D AR++FD+  + + VS
Sbjct: 170 CSQSGNLSAGKMIHGLILVYGLGSQV-VLTNSLIDMYSKCGQVDYARILFDHSDKLDGVS 228

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM- 589
           W SL+ GY  +G  ++      +M + GLA +  T    L ACS +     G K F +M 
Sbjct: 229 WNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNF---NGCKMFGTML 285

Query: 590 ---SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
              + + G+         ++D+  +   LD+A+++ + M ++   +++ A++ G      
Sbjct: 286 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQM-VDKNVVMYNAMMAGLLQQET 344

Query: 647 VE--LGELAANRLLELES 662
           +E      A N   E++S
Sbjct: 345 IEDKCAYKALNLFFEMKS 362


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/731 (34%), Positives = 395/731 (54%), Gaps = 93/731 (12%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA--RCDTLSYAR 190
           P    FP  L+ CG   + R  + +HA+   +   ++  V + L+A+YA  R + L YA 
Sbjct: 15  PPNLHFP--LQNCG---TEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAH 69

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            LFD + +P    +VSWN ++  Y ++  +   + LF ++  D     D  +L   L  C
Sbjct: 70  SLFDWIQEP---TLVSWNLLIKCYIENQRSNDAIALFCKLLCDF--VPDSFTLPCVLKGC 124

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           A LG    GKQ                          CG +E  +KVF+RM+ KDVVSWN
Sbjct: 125 ARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWN 184

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           +++ GY+R G  E A     +M +E  + +  +W+ +I G ++ G    A DVF +M   
Sbjct: 185 SLIDGYARCGEIELAL----EMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRM--- 237

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
                                           I+  +S            NA+I+ Y K 
Sbjct: 238 -------------------------------PIRNSVS-----------WNAMINGYMKA 255

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
              + A+ +FD +    R + TW  MI  Y +N     AL LF  M ++D  + PN  T+
Sbjct: 256 GDSNTAKELFDQMP--ERSLVTWNSMITGYERNKQFTKALKLFEVMLRED--ISPNYTTI 311

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
             A+ A + + +L  GR +H+Y++++ ++     +   LI+MYS+ G + +A  VF ++ 
Sbjct: 312 LGAVSAASGMVSLGTGRWVHSYIVKSGFKT-DGVLGTLLIEMYSKCGSVKSALRVFRSIP 370

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           ++ +  WTS++ G GMHGL ++    FD+M + GL P  +TF+ +L ACSH+G  +   +
Sbjct: 371 KKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHR 430

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           YF  M+ ++GI    EHY C++D+L RA  L+EA + IE MP++   +IW +LL+G R H
Sbjct: 431 YFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKH 490

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N+ +GE AA  L++L  +  G Y +LSN+YA AG W+ V ++R +MK  G+KK PGCS 
Sbjct: 491 GNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSS 550

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV-DDEEKGDLL 763
           ++ +     F VGD++HPQ+++IY  L  + +++   G++P T+  L  + +D EK   L
Sbjct: 551 IEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAEL 610

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSE+LA+A+G+L    G+PIRI KNLRIC DCH+    +S I N EII+RD +RFHHF
Sbjct: 611 ETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHF 670

Query: 824 KEGSCTCKGYW 834
           K GSC+CK +W
Sbjct: 671 KSGSCSCKDFW 681



 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 239/475 (50%), Gaps = 47/475 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN LI+  +  +  ++A  LF +++   + PD +T P VLK C  L + + G  +H ++ 
Sbjct: 83  WNLLIKCYIENQRSNDAIALFCKLLC-DFVPDSFTLPCVLKGCARLGALQEGKQIHGLVL 141

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GF  + FV ++L++MY++C  +   R++FD M      D+VSWN+++  YA+ G+ E 
Sbjct: 142 KIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDK---DVVSWNSLIDGYARCGEIEL 198

Query: 223 GLMLFARMTGDVKVQGDGVS---LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            L +F  M      + D  S   L++ LS            + G +E A+ VF+RM +++
Sbjct: 199 ALEMFEEMP-----EKDSFSWTILIDGLS------------KSGKLEAARDVFDRMPIRN 241

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            VSWNAM+ GY + G    A  LF +M +     ++VTW+++I GY +     +AL +F 
Sbjct: 242 SVSWNAMINGYMKAGDSNTAKELFDQMPER----SLVTWNSMITGYERNKQFTKALKLFE 297

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M    + PN  T++  +S  + + +L  G+  H Y +K     DG      ++   LI+
Sbjct: 298 VMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDG------VLGTLLIE 351

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY+KC SV  A  +F +I PK + +  WT +I     +G     L LF +M +    +KP
Sbjct: 352 MYSKCGSVKSALRVFRSI-PKKK-LGHWTSVIVGLGMHGLVEQTLELFDEMCRTG--LKP 407

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVAN--CLIDMYSRSGDIDTA 516
           +A T    L AC+      F    H Y     Y+  I P + +  CLID+  R+G ++ A
Sbjct: 408 HAITFIGVLNACSHAG---FAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEA 464

Query: 517 RVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +   + +  + N V WTSL++G   HG      +A   +    LAPD     V+L
Sbjct: 465 KDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLID--LAPDTTGCYVIL 517



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 124/299 (41%), Gaps = 25/299 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y+     + A  L  ++     S+  WN++I    R +    A +LF  M+R    
Sbjct: 248 MINGYMKAGDSNTAKELFDQMPER--SLVTWNSMITGYERNKQFTKALKLFEVMLREDIS 305

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  T    + A   + S   G  VH+ I  SGF ++  +   L+ MY++C ++  A ++
Sbjct: 306 PNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRV 365

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  + +     +  W +++      G  E  L LF  M     ++   ++ +  L+AC+ 
Sbjct: 366 FRSIPKK---KLGHWTSVIVGLGMHGLVEQTLELFDEMC-RTGLKPHAITFIGVLNACS- 420

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                     G  E+A + F+ M         +  +  ++    R G  E+A    ++M 
Sbjct: 421 --------HAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERM- 471

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
              +K N V W+++++G   R HG+  +  +       L P+      +LS   +   L
Sbjct: 472 --PIKANKVIWTSLLSG--SRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGL 526


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/755 (34%), Positives = 412/755 (54%), Gaps = 36/755 (4%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           AL L   ++ +    F WN +I+      L   A +L+ +M+  G   D +T+PFV+K+ 
Sbjct: 79  ALQLFDEMNKA--DTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSV 136

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
             + S   G  +HA++    F S+V+VCN+L+++Y +      A ++F+EM +    DIV
Sbjct: 137 TGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPER---DIV 193

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           SWN++++ Y    D    LMLF  M      + D  S ++AL AC+ + + + GK+    
Sbjct: 194 SWNSMISGYLALEDGFRSLMLFKEML-KFGFKPDRFSTMSALGACSHVYSPNMGKEL--- 249

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                V  R++  DV+   +++  YS+ G    A  +FK + Q N+    V W+ +I  Y
Sbjct: 250 -HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNI----VAWNVLIGCY 304

Query: 326 AQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           A+     +A   F++M +  GL+P+V+TL++LL  CA    +L G+  H Y ++R     
Sbjct: 305 ARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA----ILEGRTIHGYAMRR----- 355

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
           G  P  +++  ALIDMY +   +  A V+FD IA KN  + +W  +I +Y QNG    AL
Sbjct: 356 GFLPH-IVLDTALIDMYGEWGQLKSAEVIFDRIAEKN--LISWNSIIAAYVQNGKNYSAL 412

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF +++  D  + P++ T++  L A A   +L  GRQIHAY+++++Y      + N L+
Sbjct: 413 ELFQKLW--DSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGS-NTIILNSLV 469

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            MY+  GD++ AR  F+++  ++VVSW S++  Y +HG G  +   F +M    + P+  
Sbjct: 470 HMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKS 529

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF  LL ACS SGMVD+G +YF+SM +E+GI    EHY  ++DL+GR      A   I  
Sbjct: 530 TFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIRE 589

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MP  PT  IW +LLN  R H ++ + E AA ++ ++E +  G Y LL N+YA A RW+DV
Sbjct: 590 MPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDV 649

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI-----K 739
            RI+ LM+  G+ +    S V+ K  T     GDR+H ++ KIYE+L  +V R+     +
Sbjct: 650 NRIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEVL-DIVSRMIGEEEE 708

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
              YV   S    +   + + +    HS +LA  +G+++T  G  + +  N RIC  CH 
Sbjct: 709 EDSYVHYVSKLRRETLAKSRSNSPRRHSVRLATCFGLISTETGRTVTVRNNTRICRKCHE 768

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +   S +   EI++ DS  FHHF  G C+C  YW
Sbjct: 769 FLEKASKMTRREIVVGDSKIFHHFSNGRCSCGNYW 803



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 172/388 (44%), Gaps = 83/388 (21%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW---- 318
           G+ME+A ++F+ M   D   WN M+ G++  G + +A  L+ +M    VK +  T+    
Sbjct: 74  GLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVI 133

Query: 319 -------------------------------SAVIAGYAQRGHGHEALDVFRQMQ----- 342
                                          +++I+ Y + G   +A  VF +M      
Sbjct: 134 KSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIV 193

Query: 343 --------FCGLE------------------PNVVTLVSLLSGCASVGALLLGKETHCYT 376
                   +  LE                  P+  + +S L  C+ V +  +GKE HC+ 
Sbjct: 194 SWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHA 253

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           ++  +        D+MV+ +++DMY+K   V  A  +F  I  +N  +  W V+IG Y++
Sbjct: 254 VRSRIET-----GDVMVMTSILDMYSKYGEVSYAERIFKCIIQRN--IVAWNVLIGCYAR 306

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           N    DA   F +M +Q+ L +P+  TL   L ACA L     GR IH Y +R  +   +
Sbjct: 307 NSRVTDAFLCFQKMSEQNGL-QPDVITLINLLPACAILE----GRTIHGYAMRRGF---L 358

Query: 497 PFVA--NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           P +     LIDMY   G + +A V+FD + ++N++SW S++  Y  +G    A   F ++
Sbjct: 359 PHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKL 418

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQG 582
               L PD  T   +L A + S  + +G
Sbjct: 419 WDSSLLPDSTTIASILPAYAESLSLSEG 446



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 53/262 (20%)

Query: 50  LTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRR 109
           L    +I  +I  +NL  +  + +IAAYV +     AL L Q++        W ++L+  
Sbjct: 377 LKSAEVIFDRIAEKNL--ISWNSIIAAYVQNGKNYSALELFQKL--------WDSSLL-- 424

Query: 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
                                  PD  T   +L A  E  S   G  +HA I  S + SN
Sbjct: 425 -----------------------PDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSN 461

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
             + N+L+ MYA C  L  AR+ F+ +    + D+VSWN+I+ AYA  G     + LF+ 
Sbjct: 462 TIILNSLVHMYAMCGDLEDARKCFNHVL---LKDVVSWNSIIMAYAVHGFGRISVCLFSE 518

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWN 284
           M    KV  +  +  + L+AC+           GM++E  + FE MK +      +  + 
Sbjct: 519 MIAS-KVDPNKSTFASLLAACS---------ISGMVDEGWEYFESMKREYGIDPGIEHYG 568

Query: 285 AMVTGYSRIGSFEDAFALFKKM 306
            M+    R G+F  A    ++M
Sbjct: 569 YMLDLIGRTGNFSSAKRFIREM 590


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/766 (32%), Positives = 407/766 (53%), Gaps = 30/766 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y+       AL +  R+     +V  W +LI          +A  LF +M+  G  
Sbjct: 56  VIQMYLRCGCTDLALDVFDRMKDQ--NVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVS 113

Query: 133 PDEYTF-PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           PD  TF   +LK  G   +   G  VH+ I  +G++ +  V N ++ MY +C  +  A  
Sbjct: 114 PDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGN 173

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD +  P   ++ SW  I+AAYAQ+G     L L +RM     V+ DG +    L AC 
Sbjct: 174 VFDSIQDP---NVFSWTIIIAAYAQNGHCMEVLRLLSRMN-QAGVKPDGYTFTTVLGACT 229

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           ++G     K    +  A  +      +D     A++  Y + G+ E+AF +F ++  +++
Sbjct: 230 AVGALEEAK----ILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDI 285

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               V+WS++IA +AQ G    A+ +   M   G+ PN VT V++L    S+ A   GKE
Sbjct: 286 ----VSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKE 341

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H   ++        + DD+ + +AL+ MY     V+ AR +F++   + RDV +W+ MI
Sbjct: 342 IHARIVQ------AGYSDDVCLTSALVKMYCNWGWVETARSIFES--SRERDVVSWSSMI 393

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             YSQN     AL+LF +M  +   V+PN+ T   A+ ACA + ALR G Q+H  V    
Sbjct: 394 AGYSQNESPARALSLFREM--EVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLG 451

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            +  +P VA  L+++Y + G ++ A  VF  +K++N+++WTS+   YG +G G ++    
Sbjct: 452 LDKDVP-VATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLL 510

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
             M  +G+ PDG+ F+ +L +C+++G + +GL Y++ M+++FGI+   EH  C+VD+LGR
Sbjct: 511 HGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGR 570

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A +L+ A +LI  M  E + + W+ LL  C+ H +      AA ++ +LE +    Y LL
Sbjct: 571 AGKLEAAEQLINTMKFE-SSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLL 629

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS--QKIYE 729
           S+++  AG W+     R  M   GV++  G S ++  +    F       P     +I+ 
Sbjct: 630 SSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFA 689

Query: 730 ILAGLVQRIKAMGYVPQ-TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
            L  L + ++  GYVP  T+  L DV++  K + +  HSE LAL  GI++T  GTP+RIT
Sbjct: 690 ALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGTPLRIT 749

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCH A  F+S +++  I +RD  R HHF+ G C+C  YW
Sbjct: 750 KNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 252/506 (49%), Gaps = 37/506 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGF-----DSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +L AC +L +   G  VH ++               + N ++ MY RC     A  +FD 
Sbjct: 16  ILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDR 75

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M      ++V+W ++++A+  +G     ++LF +M         GVS  + ++  + L  
Sbjct: 76  MKDQ---NVVAWTSLISAFTFAGHFGDAMVLFRKML------LSGVS-PDRITFTSILLK 125

Query: 256 WSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           WS G++   ++E K+V   +       D +  N +V  Y + G  E A  +F  ++    
Sbjct: 126 WS-GRERN-LDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDP-- 181

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             NV +W+ +IA YAQ GH  E L +  +M   G++P+  T  ++L  C +VGAL   K 
Sbjct: 182 --NVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKI 239

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H  TI            D  V  ALI++Y KC +++ A  +F  I   N+D+ +W+ MI
Sbjct: 240 LHAATISST-----GLDRDAAVGTALINLYGKCGALEEAFGVFVQI--DNKDIVSWSSMI 292

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            +++Q+G A  A+ L   M    + V+PN  T    L A   L A ++G++IHA +++  
Sbjct: 293 AAFAQSGQAKSAIQLL--MLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAG 350

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           Y   +   +  L+ MY   G ++TAR +F++ ++R+VVSW+S++ GY  +    +A   F
Sbjct: 351 YSDDVCLTS-ALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLF 409

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M  +G+ P+ VTF+  + AC+  G + +G +  + + +  G+         +V+L G+
Sbjct: 410 REMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERV-RCLGLDKDVPVATALVNLYGK 468

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVAL 637
             RL+EA  +  GM  +   + W ++
Sbjct: 469 CGRLEEAEAVFLGMK-KKNLLTWTSI 493



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 175/342 (51%), Gaps = 17/342 (4%)

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           ++Q +  +    L+AC+ L     GK+   +   + + +  +  + +  N ++  Y R G
Sbjct: 5   EIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCG 64

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             + A  +F +M+ +    NVV W+++I+ +   GH  +A+ +FR+M   G+ P+ +T  
Sbjct: 65  CTDLALDVFDRMKDQ----NVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLS--VDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           S+L   +       G+E +    KRV S  +   +  D MV+N +++MY KC  V+ A  
Sbjct: 121 SILLKWS-------GRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGN 173

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD+I   N  V +WT++I +Y+QNG   + L L  +M Q    VKP+ +T +  L AC 
Sbjct: 174 VFDSIQDPN--VFSWTIIIAAYAQNGHCMEVLRLLSRMNQAG--VKPDGYTFTTVLGACT 229

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            + AL   + +HA  + +        V   LI++Y + G ++ A  VF  +  +++VSW+
Sbjct: 230 AVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWS 289

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           S++  +   G    A      M  EG+ P+ VTF+ +L A +
Sbjct: 290 SMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVT 331



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 142/274 (51%), Gaps = 7/274 (2%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           ++  +    ++L+ C+ + AL  GK  H   ++  L  D   PD+ ++ N +I MY +C 
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQD-ERPDESLLENIVIQMYLRCG 64

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
             D+A  +FD +  K+++V  WT +I +++  G   DA+ LF +M      V P+  T +
Sbjct: 65  CTDLALDVFDRM--KDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSG--VSPDRITFT 120

Query: 466 CALMA-CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
             L+    R   L  G+++H+++++  YE     V N +++MY + GD++ A  VFD+++
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQTGYEG-DRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             NV SWT ++  Y  +G   +      +M + G+ PDG TF  +L AC+  G +++   
Sbjct: 180 DPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKI 239

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
              +     G+   A     +++L G+   L+EA
Sbjct: 240 LHAATISSTGLDRDAAVGTALINLYGKCGALEEA 273



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 15/184 (8%)

Query: 465 SCA--LMACARLAALRFGRQIHAYVLRNQYEMLI-------PFVANCLIDMYSRSGDIDT 515
           +CA  L AC+ L AL  G+++H  V+R   E L+         + N +I MY R G  D 
Sbjct: 12  ACAAILTACSDLRALPEGKRVHGLVMR---ESLLQDERPDESLLENIVIQMYLRCGCTDL 68

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL-VLLYACS 574
           A  VFD +K +NVV+WTSL++ +   G    A   F +M   G++PD +TF  +LL    
Sbjct: 69  ALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSG 128

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
               +D+G K   S   + G          +V++ G+   +++A  + + +  +P    W
Sbjct: 129 RERNLDEG-KRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSI-QDPNVFSW 186

Query: 635 VALL 638
             ++
Sbjct: 187 TIII 190


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/549 (41%), Positives = 335/549 (61%), Gaps = 16/549 (2%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V  Y    S  +A  LF ++ + N+ L    W+ +I GYA  G    A+ ++ QM+  G
Sbjct: 42  LVNLYCICNSLTNAHLLFDRISKRNLFL----WNVMIRGYAWNGPYELAISLYYQMRDYG 97

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P+  T   +L  C+++ A+  GK+ H   I+  L        D+ V  ALIDMYAKC 
Sbjct: 98  LVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLE------SDVFVGAALIDMYAKCG 151

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V+ AR +FD I    RDV  W  M+ +YSQNG  +++LAL   M      +KP   T  
Sbjct: 152 CVESARQVFDKI--DERDVVCWNSMLATYSQNGQPDESLALCRVMAFNG--LKPTEGTFV 207

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
            ++ A A    L  G+++H Y  R+ +E     V   L+DMY++SG ++ AR +F+ L++
Sbjct: 208 ISIAASADNGLLPQGKELHGYSWRHGFESNDK-VKTALMDMYAKSGSVNVARSLFELLEE 266

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           + VVSW +++TGY MHG  ++A   F +M+ + L PD +TF+ +L ACSH G++++G  +
Sbjct: 267 KRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PDHITFVGVLAACSHGGLLNEGKMH 325

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F SM  +F I    +HY C++DLLG   RL+EA +LI  M +EP   +W ALL+ C+IH 
Sbjct: 326 FRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG 385

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           NVE+GELA  +L+ELE +  G+Y +LSN+YA AG+W  VAR+R LM + G+KK   CSW+
Sbjct: 386 NVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWI 445

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +       F   D +HP+S+ IY  L    + +K  GY PQ     HDV+D+EK D++  
Sbjct: 446 EVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSC 505

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+A+G+++T+ GT + I KNLRIC DCH AI FIS I   EI +RD NR+HHFK+
Sbjct: 506 HSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKD 565

Query: 826 GSCTCKGYW 834
           G C+C  +W
Sbjct: 566 GVCSCGDFW 574



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 224/492 (45%), Gaps = 85/492 (17%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSP 97
           LL+ C   K++     +H +I    ++  P   + L+  Y   N+ + A  L  RIS   
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR- 65

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++F WN +IR        + A  L+ QM   G  PD++TFPFVLKAC  L +   G  +
Sbjct: 66  -NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +  SG +S+VFV  AL+ MYA+C  +  ARQ+FD++ +    D+V WN+++A Y+Q+
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDER---DVVCWNSMLATYSQN 181

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
           G  +  L L   M  +     +G + V +++A A  G   +GK+                
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEG-TFVISIAASADNGLLPQGKELHGYSWRHGFESNDKV 240

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                      G +  A+ +FE ++ K VVSWNAM+TGY+  G   +A  LFK+M+ + V
Sbjct: 241 KTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-V 299

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQM--------------------QFCG------ 345
             + +T+  V+A  +  G  +E    FR M                      CG      
Sbjct: 300 LPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAY 359

Query: 346 -------LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
                  +EP+     +LL  C   G + +G+      +++++ ++   PDD      L 
Sbjct: 360 KLIMEMRVEPDAGVWGALLHSCKIHGNVEMGE----LALEKLVELE---PDDGGNYVILS 412

Query: 399 DMYAKCKSVDVARVMFDAIAPK--NRDVATWTVMIGS-----YSQNGGANDALALFPQMF 451
           +MYA+    D    + D +  K   + +A   + +G+      S++     + A++ ++ 
Sbjct: 413 NMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELK 472

Query: 452 QQDKLVKPNAFT 463
           +  KL+K   + 
Sbjct: 473 RTGKLMKEAGYA 484



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 160/312 (51%), Gaps = 20/312 (6%)

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SLL  C    A+  GK+ H    +  +S +       ++   L+++Y  C S+  A ++F
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNP------LLATKLVNLYCICNSLTNAHLLF 59

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           D I+ +N  +  W VMI  Y+ NG    A++L+ QM  +D  + P+ FT    L AC+ L
Sbjct: 60  DRISKRN--LFLWNVMIRGYAWNGPYELAISLYYQM--RDYGLVPDKFTFPFVLKACSAL 115

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
           +A+  G++IH  V+R+  E  + FV   LIDMY++ G +++AR VFD + +R+VV W S+
Sbjct: 116 SAMEEGKKIHKDVIRSGLESDV-FVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSM 174

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           +  Y  +G  D++      M   GL P   TF++ + A + +G++ QG K     S   G
Sbjct: 175 LATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQG-KELHGYSWRHG 233

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
             +  +    ++D+  ++  ++ A  L E +  E   + W A++ G  +H +       A
Sbjct: 234 FESNDKVKTALMDMYAKSGSVNVARSLFELLE-EKRVVSWNAMITGYAMHGH-------A 285

Query: 655 NRLLELESEKDG 666
           N  L+L  E  G
Sbjct: 286 NEALDLFKEMKG 297


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/635 (37%), Positives = 351/635 (55%), Gaps = 73/635 (11%)

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
            ++N ++A YA++     G +  AR   D     D VS  N L +C           CG 
Sbjct: 39  TTYNCLLAGYAKASGP--GRLADARRLFDSIPHPDAVSY-NTLLSCHF--------ACGD 87

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           ++ A +VF  M V+DV SWN MV+G S+ G+ E+A A+F+ M   N     V+W+A++A 
Sbjct: 88  IDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNA----VSWNAMVAA 143

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            A  G    A ++FR                                            +
Sbjct: 144 RASSGDMGAAENLFR--------------------------------------------N 159

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                D ++  A++  Y    +V  A   F A+  +N  + +W  ++  Y +N  A DAL
Sbjct: 160 APEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRN--LVSWNAVVAGYVKNSRAGDAL 217

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF-----V 499
            +F  M + D +V+PN  TLS  L+ C+ L+AL FGRQ+H      Q+ M +P      V
Sbjct: 218 RVFKTMVE-DAIVQPNPSTLSSVLLGCSNLSALGFGRQVH------QWCMKLPLGRSITV 270

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
              L+ MY + GD+D A  +FD +  +++V+W ++++GY  HG G KA   F++M+ EG+
Sbjct: 271 GTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGV 330

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD +T L +L AC H+G+ D G++ F++M + + I  + +HY+C+VDLL RA  L+ AV
Sbjct: 331 VPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAV 390

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I  MP EP P  +  LL  CR++ N+E  E AA +L+E + +  G+Y  L+NIYA A 
Sbjct: 391 NMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVAN 450

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           RW DV+R+R  MK   V K PG SW++ K     F   DR HPQ   I++ L  L + +K
Sbjct: 451 RWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMK 510

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
           AMGY P   FALHDV++  K  +L  HSEKLA+A+G+++T+PG  +RI KNLRICGDCH+
Sbjct: 511 AMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHN 570

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A   IS I + EIILRD+ RFHHF+ G C+C  YW
Sbjct: 571 AAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 182/413 (44%), Gaps = 89/413 (21%)

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLK---ACGELPSSRCGSSVHAVICSSGFDSNV 170
           RL D A RLF  +     HPD  ++  +L    ACG++  +    S   V        +V
Sbjct: 56  RLAD-ARRLFDSIP----HPDAVSYNTLLSCHFACGDIDGAWRVFSTMPV-------RDV 103

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
              N +++  ++   +  A  +F  M  P   + VSWN +VAA A SGD           
Sbjct: 104 TSWNTMVSGLSKNGAIEEAEAMFRAM--PAR-NAVSWNAMVAARASSGD----------- 149

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTG 289
                                             M  A+ +F     K D + W AMV+G
Sbjct: 150 ----------------------------------MGAAENLFRNAPEKTDAILWTAMVSG 175

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEP 348
           Y   G+ + A   F+ M   N+    V+W+AV+AGY +     +AL VF+ M +   ++P
Sbjct: 176 YMDTGNVQKAMEYFRAMPVRNL----VSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQP 231

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           N  TL S+L GC+++ AL  G++ H + +K  L         + V  +L+ MY KC  +D
Sbjct: 232 NPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLG------RSITVGTSLLSMYCKCGDLD 285

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A  +FD +  K  D+  W  MI  Y+Q+GG   A+ LF +M  +D+ V P+  TL   L
Sbjct: 286 DACKLFDEMHTK--DIVAWNAMISGYAQHGGGRKAIKLFEKM--KDEGVVPDWITLLAVL 341

Query: 469 MACARLAALRFGRQI-----HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
            AC       FG Q       AY +  Q +       +C++D+  R+G ++ A
Sbjct: 342 TACIHTGLCDFGIQCFETMQEAYNIEPQVDHY-----SCMVDLLCRAGLLERA 389



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 11/209 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA++   V+     +A R+F  M+      P+  T   VL  C  L +   G  VH   
Sbjct: 200 WNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWC 259

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                  ++ V  +L++MY +C  L  A +LFDEM      DIV+WN +++ YAQ G   
Sbjct: 260 MKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK---DIVAWNAMISGYAQHGGGR 316

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDV 280
             + LF +M  D  V  D ++L+  L+AC   G    G QC   M+EA  +  +     V
Sbjct: 317 KAIKLFEKMK-DEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQ-----V 370

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
             ++ MV    R G  E A  +   M  E
Sbjct: 371 DHYSCMVDLLCRAGLLERAVNMIHSMPFE 399


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/750 (34%), Positives = 394/750 (52%), Gaps = 83/750 (11%)

Query: 150 SSRCGSSVHAVICSSGF----DSNVFVCNALMAMYARCDTL--SYARQLFDEMFQPGICD 203
           S R  + +HA++ +SG      S   + N+L +  +  D L   YA  LFD M     C 
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRM----PCS 66

Query: 204 IVSWNTIV-AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW------ 256
              ++T + A +  S   +  ++L+ RM G V V  D  +       CA  G        
Sbjct: 67  TFLFDTALRACFRASSGPDRPIILYRRMHG-VDVPPDAFTFHFLFKCCARGGAHVLLGRM 125

Query: 257 ----------------------SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     + G+  +A++ F+   VKDVV+W  +++G +++G
Sbjct: 126 LHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMG 185

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
             +DA  L  +    NV    VTW+ +I+GY++ G   EA+D F  M   G+ P+ VT++
Sbjct: 186 LLDDARRLLARAPVRNV----VTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVI 241

Query: 355 SLLSGCASVGALLLGKETHCYT-IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            +LS C  +  L  G   H     KR+L  D        ++ ALIDMYAKC     AR +
Sbjct: 242 GMLSACGQLKDLNFGCSLHMLVGDKRMLMSDK-------LVVALIDMYAKCGDTGRAREV 294

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL----------------- 456
           FDA+  + R    W  MI  Y + G  + A +LF QM   D +                 
Sbjct: 295 FDALG-RGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLRE 353

Query: 457 ------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
                       +  + FT+   L A A L AL  GR +HA + +   E  + ++   L+
Sbjct: 354 ALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDV-YLGTALL 412

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           DMY + G ++ A V F  +  R+V +W++++ G   +G+G  A   F  M+ +G   + V
Sbjct: 413 DMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSV 472

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           T++ +L ACSHS ++D+G  YFD M     I  + EHY C++DLLGR+  LDEA++L++ 
Sbjct: 473 TYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQT 532

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MPM+P  +IW ++L+ CR+H NV+L + AA+ LL+LE  +D  Y  + NIY ++ +W+D 
Sbjct: 533 MPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDA 592

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744
           ++IR LM+  GVKK  G S +        F VGDR+HPQ  +I  ++  + +R+K+ GY 
Sbjct: 593 SKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYS 652

Query: 745 PQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFI 804
           P TS    DVD+EEK   L  HSEKLA+A+G+++ AP  P+ I KNLR+C DCHSAI  I
Sbjct: 653 PITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLI 712

Query: 805 SMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           S + N EII+RD +RFHHF+ G C+C  +W
Sbjct: 713 SRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 162/590 (27%), Positives = 252/590 (42%), Gaps = 99/590 (16%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPS--HLIAAYVSHNAPSP------ALSLLQRISPSPFSV 100
           S+ Q   +H  +        PPS  HL+ +  S  +PS       ALSL  R+   P S 
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRM---PCST 67

Query: 101 FWWNALIRRAVRLRL-PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS-RCGSSVH 158
           F ++  +R   R    PD    L+ +M      PD +TF F+ K C    +    G  +H
Sbjct: 68  FLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLH 127

Query: 159 AVICSSGFDSNV-FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           A    +   S V  + + ++ MYA       AR+ FDE     + D+V+W T+++  A+ 
Sbjct: 128 AACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDE---ASVKDVVAWTTVISGLAKM 184

Query: 218 GDAEGGLMLFARM--------TGDVK----------------------VQGDGVSLVNAL 247
           G  +    L AR         TG +                       +  D V+++  L
Sbjct: 185 GLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGML 244

Query: 248 SACASLGTWSRG--------------------------KQCGMMEEAKKVFERM-KVKDV 280
           SAC  L   + G                           +CG    A++VF+ + + +  
Sbjct: 245 SACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGP 304

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
             WNAM+ GY ++G  + A +LF +M       +V+T++++I GY   G   EAL +F +
Sbjct: 305 QPWNAMIDGYCKVGHVDIARSLFDQMEDH----DVITFNSLITGYIHGGRLREALLLFTK 360

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  GL  +  T+V LL+  AS+GAL  G+  H    +R++        D+ +  AL+DM
Sbjct: 361 MRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVE------RDVYLGTALLDM 414

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y KC  V+ A V F  ++   RDV TW+ MIG  + NG    AL  F   + +      N
Sbjct: 415 YMKCGRVEEAMVAFKQMSV--RDVHTWSAMIGGLAFNGMGKAALEHF--FWMKCDGFHAN 470

Query: 461 AFTLSCALMACARLAALRFGRQIH-----AYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           + T    L AC+    L  GR         + +R Q E        C+ID+  RSG +D 
Sbjct: 471 SVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHY-----GCMIDLLGRSGLLDE 525

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           A  +   +  Q N V W S+++   +H   D A  A   + K   A D V
Sbjct: 526 AMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAV 575


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 391/715 (54%), Gaps = 45/715 (6%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+A  +  S R G  +H  +   GF S+  + N L+ MYA+C  L  A ++F  M    
Sbjct: 223 LLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDR- 281

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  ++  + Q GDA G L L   M    +   +  +L  +L AC    T   G 
Sbjct: 282 --NVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCV--TEDMGA 337

Query: 261 QCGMMEEAKKV-FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             G+     +  +E    +  V  +++V  YS+ G   DA  +F       +   + TW+
Sbjct: 338 GVGIHGLCVRTGYE----EHYVVASSLVLLYSKGGRIGDARRVFDCA---GLGRGLATWN 390

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGL------EPNVVTLVSLLSGCASVGALLLGKETH 373
           A+I+GYA  GHG +AL VFR+M+          +P+  T  SLL  C  +GA   G + H
Sbjct: 391 AMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVH 450

Query: 374 CYTIKRVLSVDG-SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
                  ++  G S   + ++  AL+DMY KC  + VA  +F+ +  KN     WT ++ 
Sbjct: 451 A-----AMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKN--AIQWTTVVV 503

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            ++Q G   +AL LF + ++     + +A  LS  +   A  A +  GRQ+H Y +++  
Sbjct: 504 GHAQEGQVMEALELFRRFWRSG--ARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPA 561

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
              +    N ++DMY + G  D A  +F  +  RNVVSWT+++ G G HGLG +A   F+
Sbjct: 562 GTDVS-AGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFE 620

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +MR  G+ PD VT+L LL ACSH+G+VD+  +YF  + ++  +  +AEHYAC+VDLLGRA
Sbjct: 621 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRA 680

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L EA +LI  MPMEPT  +W  LL+ CR+H +V +G  A + LL ++ +   +Y  LS
Sbjct: 681 GELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLS 740

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKEGTATFFVG---DRTHPQSQKIY 728
           N++A AG W++  ++R  M+  G+KK+ GCSWV+ GKE    FF G   +  HPQ+  I 
Sbjct: 741 NVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKE--VHFFYGGGDEEAHPQAGDIR 798

Query: 729 EILAGLVQRIKA-MGY-VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGT--- 783
            +L  +  R++  +GY      FALHDVD+E + + L  HSE+LA+   +L         
Sbjct: 799 RVLRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGG 858

Query: 784 ----PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
               PIR+ KNLR+CGDCH     +S ++   +++RD+NRFH F+ G+C+CK YW
Sbjct: 859 GHRQPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGTCSCKDYW 913



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 196/416 (47%), Gaps = 27/416 (6%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+EYT    LKAC        G  +H +   +G++ +  V ++L+ +Y++   +  AR++
Sbjct: 317 PNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRV 376

Query: 193 FDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTG-----DVKVQGDGVSLVNA 246
           FD     G+   + +WN +++ YA +G     L++F  M       + + Q D  +  + 
Sbjct: 377 FD---CAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASL 433

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L AC  LG    G Q   +  A          + +   A+V  Y + G    A  +F+++
Sbjct: 434 LKACGGLGAPREGAQ---VHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERL 490

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            ++    N + W+ V+ G+AQ G   EAL++FR+    G   +   L S++   A    +
Sbjct: 491 ERK----NAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALV 546

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G++ HCY +K   S  G+   D+   N+++DMY KC   D A  MF  I  +N  V +
Sbjct: 547 EQGRQVHCYGVK---SPAGT---DVSAGNSIVDMYLKCGLPDEAERMFREIPARN--VVS 598

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT MI    ++G   +A+A+F +M  +   V+P+  T    L AC+    +   R+  + 
Sbjct: 599 WTTMINGLGKHGLGREAVAMFEEM--RAGGVEPDEVTYLALLSACSHAGLVDECRRYFSC 656

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           + R++          C++D+  R+G++  AR +   +     V  W +L++   +H
Sbjct: 657 IRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVH 712



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 157/363 (43%), Gaps = 81/363 (22%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW------HPDEYTFPFVLKACGELPSSRCGSS 156
           WNA+I          +A  +F +M RR         PDE+TF  +LKACG L + R G+ 
Sbjct: 389 WNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQ 448

Query: 157 VHAVICSSGFD--SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           VHA + +SGF   SN  +  AL+ MY +C  L  A Q+F+ + +    + + W T+V  +
Sbjct: 449 VHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERK---NAIQWTTVVVGH 505

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------- 261
           AQ G     L LF R       + D   L + +   A      +G+Q             
Sbjct: 506 AQEGQVMEALELFRRFW-RSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTD 564

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG+ +EA+++F  +  ++VVSW  M+ G  + G   +A A+F++MR 
Sbjct: 565 VSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRA 624

Query: 309 ENVKLNVVTWSAVIAG-----------------------------YA-------QRGHGH 332
             V+ + VT+ A+++                              YA       + G   
Sbjct: 625 GGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELR 684

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EA D+ R M    +EP V    +LLS C     + +G+E        +L++DG +P + +
Sbjct: 685 EARDLIRTMP---MEPTVGVWQTLLSACRVHKDVAVGREAG----DVLLAIDGDNPVNYV 737

Query: 393 VIN 395
            ++
Sbjct: 738 TLS 740


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/530 (42%), Positives = 327/530 (61%), Gaps = 18/530 (3%)

Query: 313 LNVVTWSAVIAGYAQ-----RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           L    W+ +I  + Q      G  H  + +F +M+F G++P+  T   LL   AS   L 
Sbjct: 22  LESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLH 81

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG+  H   ++  L++D        V  +LI MY+    VD+AR +F A+ P+ R+V +W
Sbjct: 82  LGRSVHAQILRFGLAIDP------FVQTSLISMYSSSGLVDMARNLF-AVMPE-RNVISW 133

Query: 428 TVMIGSYSQNGGANDALALFPQM-FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           + MI  Y + G   +ALALF +M       V+PN FT+S  L AC RL AL  G+  HAY
Sbjct: 134 SCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAY 193

Query: 487 VLRNQYEMLIPFV-ANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMHGLG 544
           +  ++  M +  V    LIDMY++ G ++ A  VF NL   ++V++W+++++G  MHGL 
Sbjct: 194 I--DKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLA 251

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           ++    F +M  +G+ P+ VTFL +  AC H G+V +G  Y   M++++ I    +HY C
Sbjct: 252 EECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGC 311

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +VDL GRA R+ EA  +++ MPMEP  ++W ALL+G R+H ++E  ELA  +L+ELE   
Sbjct: 312 MVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTN 371

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
            G+Y LLSN+YA  GRW+DV  +R LM+  G+KK PGCS ++       FFVGD +HP++
Sbjct: 372 SGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPET 431

Query: 725 QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
           ++I+ +L  +++R+K  GYV  T   L D+D+E K   L  HSEKLALAYG L T+PGTP
Sbjct: 432 RQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTP 491

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRI KNLRIC DCH AI  IS + + EII+RD NRFHHF +G C+C+ YW
Sbjct: 492 IRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 160/352 (45%), Gaps = 38/352 (10%)

Query: 101 FWWNALIRRAVRLRL-----PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           F WN LIR  V+ R        +   +F++M   G  PD +TFPF+L++         G 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           SVHA I   G   + FV  +L++MY+    +  AR LF  M +    +++SW+ ++  Y 
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPER---NVISWSCMINGYV 141

Query: 216 QSGDAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------QCGMME 266
           + G  +  L LF   +M G   V+ +  ++   L+AC  LG    GK       +CGM  
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM-- 199

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
                       DVV   A++  Y++ GS E A  +F  +       +V+ WSA+I+G A
Sbjct: 200 ----------PVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNK---DVMAWSAMISGLA 246

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
             G   E + +F +M   G+ PN VT +++   C   G +  GK+       R ++ D S
Sbjct: 247 MHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD-----YLRRMTEDYS 301

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
               +     ++D+Y +   +  A  +  ++ P   DV  W  ++     +G
Sbjct: 302 IIPTIQHYGCMVDLYGRAGRIKEAWNVVKSM-PMEPDVLVWGALLSGSRMHG 352



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 169/404 (41%), Gaps = 49/404 (12%)

Query: 9   PLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQIIVQNL 65
           P   + +P+++   F  ++   V   P       LL+   S + ++L   +H QI+   L
Sbjct: 41  PTGPTHSPISI---FVRMRFHGVQ--PDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGL 95

Query: 66  THVP--PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
              P   + LI+ Y S      A +L   +     +V  W+ +I   VR      A  LF
Sbjct: 96  AIDPFVQTSLISMYSSSGLVDMARNLFAVMPER--NVISWSCMINGYVRCGQYKEALALF 153

Query: 124 LQMMRRGWH---PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMY 180
            +M   G +   P+E+T   VL ACG L +   G   HA I   G   +V +  AL+ MY
Sbjct: 154 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMY 213

Query: 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240
           A+C ++  A  +F  +      D+++W+ +++  A  G AE  + LF++M     V+ + 
Sbjct: 214 AKCGSVEKATWVFSNLGPNK--DVMAWSAMISGLAMHGLAEECVGLFSKMINQ-GVRPNA 270

Query: 241 VSLVNALSACASLGTWSRGK---------------------------QCGMMEEAKKVFE 273
           V+ +    AC   G  S GK                           + G ++EA  V +
Sbjct: 271 VTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVK 330

Query: 274 RMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
            M ++ DV+ W A+++G    G  E      KK+  E    N   +  +   YA+RG   
Sbjct: 331 SMPMEPDVLVWGALLSGSRMHGDIETCELALKKL-IELEPTNSGAYVLLSNVYAKRGRWE 389

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +   V   M+  G++   V   SL+     +    +G ++H  T
Sbjct: 390 DVRHVRDLMETMGIKK--VPGCSLIEVGGVLHEFFVGDDSHPET 431


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/699 (35%), Positives = 395/699 (56%), Gaps = 46/699 (6%)

Query: 151 SRCGSSVHAVICSSGFDS----NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS 206
           S+CG   +A    + FDS    NVF  N ++  YA+   +  ARQLFDE  QP   D VS
Sbjct: 54  SKCGCLSYA---RAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQP---DTVS 107

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           +NT+++ YA + +    ++LF RM  ++  + DG +L   ++AC       +   C  + 
Sbjct: 108 YNTLISGYADARETVAAMVLFKRMR-ELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVS 166

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM---RQENVKLNVVTWSAVIA 323
                +  +        NA VT YS+ G   +A ++F  M   R E      V+W+++I 
Sbjct: 167 GGFDSYSSVN-------NAFVTYYSKGGLLREAVSVFYGMDGLRDE------VSWNSMIV 213

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
            Y Q   G +AL ++++M F G + ++ TL S+L+   S+  L+ G++ H   IK     
Sbjct: 214 AYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA---- 269

Query: 384 DGSHPDDLMVINALIDMYAKCKS----VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            G H +   V + LID Y+KC       D  +V  + ++P   D+  W  MI  YS N  
Sbjct: 270 -GFHQNS-HVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP---DLVLWNTMISGYSMNEE 324

Query: 440 -ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            + +A+  F QM  Q    +P+  +  C   AC+ L++   G+QIH   +++        
Sbjct: 325 HSEEAVKSFRQM--QRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRIS 382

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V N LI +Y +SG++  AR VFD + + N VS+  ++ GY  HG G +A   + +M   G
Sbjct: 383 VNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSG 442

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           +AP+ +TF+ +L AC+H G VD+G KYF++M + F I   AEHY+C++DLLGRA +L+EA
Sbjct: 443 IAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEA 502

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
              I+ MP +P  + W ALL  CR H N+ L E AA  L+ ++      Y +L+N+YA+A
Sbjct: 503 ERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADA 562

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           G+W+++A +R  M+   ++K+PGCSW++ K+    F   D +HP  +++ E L  +++++
Sbjct: 563 GKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKM 622

Query: 739 KAMGYVPQTSFALHDVDDEEKGDL---LFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
           K +GYV    +A+   D+  +G+    L  HSEKLA+A+G+++T  G  I + KNLRICG
Sbjct: 623 KKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICG 682

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH+AI F+S +   EII+RD+ RFH FK+G C+C  YW
Sbjct: 683 DCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 170/335 (50%), Gaps = 22/335 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I    + +    A  L+ +M+ +G+  D +T   VL A   L     G   H  + 
Sbjct: 208 WNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLI 267

Query: 163 SSGFDSNVFVCNALMAMYARC---DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +GF  N  V + L+  Y++C   D +S + ++F E+  P   D+V WNT+++ Y+ + +
Sbjct: 268 KAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP---DLVLWNTMISGYSMNEE 324

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVK 278
                +   R    +  + D  S V   SAC++L + S+GKQ  G+  ++     R+ V 
Sbjct: 325 HSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVN 384

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                NA+++ Y + G+  DA  +F +M +    LN V+++ +I GYAQ GHG EAL ++
Sbjct: 385 -----NALISLYYKSGNLLDARRVFDRMPE----LNAVSFNCMIKGYAQHGHGTEALRLY 435

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++M   G+ PN +T V++LS CA  G +  G++ +  T+K    ++          + +I
Sbjct: 436 QRMLDSGIAPNNITFVAILSACAHCGKVDEGQK-YFNTMKETFKIEPEAEH----YSCMI 490

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           D+  +   ++ A    DA+  K   VA W  ++G+
Sbjct: 491 DLLGRAGKLEEAERFIDAMPYKPGSVA-WAALLGA 524



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 121/269 (44%), Gaps = 24/269 (8%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           SP  V W   +   ++     + A + F QM R G  PD+ +F  V  AC  L S   G 
Sbjct: 306 SPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGK 365

Query: 156 SVHAVICSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            +H +   S   SN + V NAL+++Y +   L  AR++FD M  P + + VS+N ++  Y
Sbjct: 366 QIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRM--PEL-NAVSFNCMIKGY 422

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           AQ G     L L+ RM  D  +  + ++ V  LSACA          CG ++E +K F  
Sbjct: 423 AQHGHGTEALRLYQRML-DSGIAPNNITFVAILSACA---------HCGKVDEGQKYFNT 472

Query: 275 MKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           MK       +   ++ M+    R G  E+A      M     K   V W+A++   A R 
Sbjct: 473 MKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAM---PYKPGSVAWAALLG--ACRK 527

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           H + AL      +   ++P   T   +L+
Sbjct: 528 HKNMALAERAAKELMVMQPLAATPYVMLA 556


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/599 (38%), Positives = 336/599 (56%), Gaps = 21/599 (3%)

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           + D VSL   +  C   GT   G+      EA           +   N++ + Y++ G  
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGHEALDVFRQMQFCGLEPNVVTLVS 355
           +DA  +F  M   NV    VTW+ V+A  A   G   EAL     M+  G+ PN  T  S
Sbjct: 121 DDALRMFDGMPVRNV----VTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSS 176

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           +L  C + G L      H  T+K  L        D+ V ++LID Y K   +D  R +FD
Sbjct: 177 VLGACTTPGML---TAVHASTVKAGLD------SDVFVRSSLIDAYVKLGDLDGGRRVFD 227

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +    RD+  W  +I  ++Q+G    A+ LF +M  +D     N  TL+  L AC  + 
Sbjct: 228 EMV--TRDLVVWNSIIAGFAQSGDGVGAIELFMRM--KDAGFSSNQGTLTSVLRACTGMV 283

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            L  GRQ+HA+VL+   ++++    N L+DMY + G ++ A  +F  + QR+V+SW++++
Sbjct: 284 MLEAGRQVHAHVLKYDRDLIL---HNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMV 340

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           +G   +G   +A   FD M+ +G+AP+ VT + +L+ACSH+G+V+ G  YF SM + FGI
Sbjct: 341 SGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGI 400

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
               EH+ C+VDLLGRA +LDEAVE I GM +EP  +IW  LL  CR+H N  L   AA 
Sbjct: 401 QPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAR 460

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF 715
            +L+LE +  G+  LLSN YA+  +W D  +    M+  G++K PG SW++ ++    F 
Sbjct: 461 EILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFI 520

Query: 716 VGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
            GD +HP S  I + L  L+ RIK++GYVPQT F L D+  E+K DLL  HSEK+A+ +G
Sbjct: 521 AGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFG 580

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +    G PIRI KNLRICGDCH+    +S      I++RD  RFHHF++G+C+C  YW
Sbjct: 581 TMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 196/406 (48%), Gaps = 36/406 (8%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS-GDAEGGLMLF 227
            +FV N+L +MYA+   L  A ++FD M    + ++V+W T+VAA A + G  +  L   
Sbjct: 103 GLFVSNSLASMYAKFGLLDDALRMFDGM---PVRNVVTWTTVVAALASADGRKQEALRFL 159

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
             M  D  V  +  +  + L AC + G  +          A  V   +   DV   ++++
Sbjct: 160 VAMRRD-GVAPNAYTFSSVLGACTTPGMLT-------AVHASTVKAGLD-SDVFVRSSLI 210

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
             Y ++G  +    +F +M    V  ++V W+++IAG+AQ G G  A+++F +M+  G  
Sbjct: 211 DAYVKLGDLDGGRRVFDEM----VTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS 266

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
            N  TL S+L  C  +  L  G++ H + +K        +  DL++ NAL+DMY KC S+
Sbjct: 267 SNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--------YDRDLILHNALLDMYCKCGSL 318

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + A  +F  +    RDV +W+ M+   +QNG + +AL +F  M  Q   V PN  T+   
Sbjct: 319 EDADALFHRMP--QRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQG--VAPNHVTMVGV 374

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDTARVVFDNLK- 524
           L AC+    +  G   H +    +   + P     NC++D+  R+G +D A      +  
Sbjct: 375 LFACSHAGLVEDG--WHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSL 432

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           + + V W +L+    MH     A +A  ++ K  L PD     VLL
Sbjct: 433 EPDSVIWRTLLGACRMHKNASLAAYAAREILK--LEPDDQGARVLL 476



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 160/318 (50%), Gaps = 28/318 (8%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            A R  + M R G  P+ YTF  VL AC    +    ++VHA    +G DS+VFV ++L+
Sbjct: 154 EALRFLVAMRRDGVAPNAYTFSSVLGAC---TTPGMLTAVHASTVKAGLDSDVFVRSSLI 210

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
             Y +   L   R++FDEM      D+V WN+I+A +AQSGD  G + LF RM  D    
Sbjct: 211 DAYVKLGDLDGGRRVFDEMVTR---DLVVWNSIIAGFAQSGDGVGAIELFMRMK-DAGFS 266

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--KDVVSWNAMVTGYSRIGS 295
            +  +L + L AC  +          M+E  ++V   +    +D++  NA++  Y + GS
Sbjct: 267 SNQGTLTSVLRACTGM---------VMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGS 317

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            EDA ALF +M Q     +V++WS +++G AQ G   EAL VF  M+  G+ PN VT+V 
Sbjct: 318 LEDADALFHRMPQR----DVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVG 373

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           +L  C+  G +  G   +  ++KR+  +           N ++D+  +   +D A V F 
Sbjct: 374 VLFACSHAGLVEDGWH-YFRSMKRLFGIQPEREHH----NCMVDLLGRAGKLDEA-VEFI 427

Query: 416 AIAPKNRDVATWTVMIGS 433
                  D   W  ++G+
Sbjct: 428 HGMSLEPDSVIWRTLLGA 445


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/555 (40%), Positives = 329/555 (59%), Gaps = 44/555 (7%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N   W+A+I GYA +G   E+ + + +M+  G+ P   T  +L   C +   + LGK+ H
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------ 421
             TI     + G    DL V N++ID+Y KC  +  AR +FD ++ ++            
Sbjct: 166 AQTI-----LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYA 220

Query: 422 -----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
                            +D+  WT M+  Y+QNG   +AL  F +M  QD  ++ +  TL
Sbjct: 221 KYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKM--QDVGMETDEVTL 278

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIP----FVANCLIDMYSRSGDIDTARVVF 520
           +  + ACA+L A++    I     R+ +    P     V + LIDMYS+ G  D A  VF
Sbjct: 279 AGVISACAQLGAVKHANWIRDIAERSGFG---PSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           + +K+RNV S++S++ GY MHG    A   F  M K  + P+ VTF+ +L ACSH+G+V+
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           QG + F  M K FG++   +HYAC+VDLLGRA  L+EA++L++ MPMEP   +W ALL  
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH N ++ ++AAN L +LE    G+Y LLSNIYA+AGRW++V+++R +++  G KK P
Sbjct: 456 CRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNP 515

Query: 701 GCSWVQGKEGTA-TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           GCSW +GK G    FF GD THP+S +I + L  L++R+++ GY P    A +D+ D+EK
Sbjct: 516 GCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEK 575

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             +L  HSEKLALAYG+L T  G  I+I KN+RIC DCH+ +   S I   EII+RD+ R
Sbjct: 576 ERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMR 635

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF  G+C+C  +W
Sbjct: 636 FHHFHNGTCSCGNFW 650



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 238/536 (44%), Gaps = 105/536 (19%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAP---SPALSLLQRISPSP 97
           +L  C   +Q+  +H  II   L+      + LI      + P    P L   Q   P+P
Sbjct: 48  ILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNP 107

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           F    W A+IR      L   +   + +M R G  P  +TF  + KACG   +   G  V
Sbjct: 108 F---LWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164

Query: 158 HA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           HA  I   GF S+++V N+++ +Y +C  L  AR++FDEM +    D+VSW  ++ AYA+
Sbjct: 165 HAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSER---DVVSWTELIVAYAK 221

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            GD                                             ME A  +F+ + 
Sbjct: 222 YGD---------------------------------------------MESASGLFDDLP 236

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            KD+V+W AMVTGY++ G  ++A   F+KM+   ++ + VT + VI              
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI-------------- 282

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVIN 395
                                S CA +GA+      H   I+ +    G  P  +++V +
Sbjct: 283 ---------------------SACAQLGAV-----KHANWIRDIAERSGFGPSGNVVVGS 316

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           ALIDMY+KC S D A  +F+ +  K R+V +++ MI  Y+ +G A+ AL LF  M + + 
Sbjct: 317 ALIDMYSKCGSPDEAYKVFEVM--KERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE- 373

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            ++PN  T    L AC+    +  GRQ+ A + +       P    C++D+  R+G ++ 
Sbjct: 374 -IRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEE 432

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           A  +   +  + N   W +L+    +HG  D A  A +++ K  L P+G+   +LL
Sbjct: 433 ALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK--LEPNGIGNYILL 486



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 15/254 (5%)

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           FPQ+  Q KL++   + L   L  C   + ++   Q+HA+++RN       +V   LI M
Sbjct: 31  FPQLQHQRKLLE---WRLMSILHDCTLFSQIK---QVHAHIIRNGLSQ-CSYVLTKLIRM 83

Query: 507 YSRSGDIDTAR---VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
            ++  D+       +VF  +   N   WT+++ GY + GL  ++   + +MR++G+ P  
Sbjct: 84  LTKV-DVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVS 142

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
            TF  L  AC  +  +D G +         G ++       ++DL  +   L  A ++ +
Sbjct: 143 FTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD 202

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            M  E   + W  L+     + ++   E A+    +L S+   ++T +   YA  GR K+
Sbjct: 203 EMS-ERDVVSWTELIVAYAKYGDM---ESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKE 258

Query: 684 VARIRSLMKHTGVK 697
                  M+  G++
Sbjct: 259 ALEYFQKMQDVGME 272


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 333/574 (58%), Gaps = 15/574 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG ++ A  +F  M  K+++S N ++ GY R G +  A  +F +M + NV     TW+A
Sbjct: 99  KCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNV----ATWNA 154

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           ++AG  Q     E L +F +M   G  P+   L S+L GCA + AL+ G++ H Y  K  
Sbjct: 155 MVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCG 214

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
              +      L+V+++L  MY KC S+     +  A+  +N  V  W  +I   +QNG  
Sbjct: 215 FEFN------LVVVSSLAHMYMKCGSLGEGERLIRAMPSQN--VVAWNTLIAGRAQNGYP 266

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            + L  +  M       +P+  T    + +C+ LA L  G+QIHA V++    +++  ++
Sbjct: 267 EEVLDQYNMMKMAG--FRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVIS 324

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           + LI MYSR G ++ +  VF   +  +VV W+S++  YG HG G +A   F+QM +E L 
Sbjct: 325 S-LISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLE 383

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
            + VTFL LLYACSH G+ ++G+K+FD M +++G+  R EHY C+VDLLGR   ++EA  
Sbjct: 384 ANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEA 443

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           LI  MP++   I W  LL+ C+IH   E+    +  +  L+      Y LLSNI+A+  R
Sbjct: 444 LIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKR 503

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           W DV+ +R  M+   +KK PG SW++ K     F +GD++HP+S +I   L  L   +K 
Sbjct: 504 WDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKK 563

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GYVP     LHD+D E+K   L  HSEKLA+A+ +L T  GTPIR+ KNLR+C DCH A
Sbjct: 564 RGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVA 623

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I +IS I N EII+RDS+RFHHFK G C+C  YW
Sbjct: 624 IKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 209/442 (47%), Gaps = 67/442 (15%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS---------- 187
           F  +L++C    S   G  +H++I +SG  S+ F+ N L+ +Y++C  L           
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 188 ---------------------YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
                                 AR++FDEM +    ++ +WN +VA   Q    E GL L
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPER---NVATWNAMVAGLIQFEFNEEGLGL 171

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNA 285
           F+RM  ++    D  +L + L  CA L     G+Q  G + +    F      ++V  ++
Sbjct: 172 FSRMN-ELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEF------NLVVVSS 224

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +   Y + GS  +   L + M  +    NVV W+ +IAG AQ G+  E LD +  M+  G
Sbjct: 225 LAHMYMKCGSLGEGERLIRAMPSQ----NVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAG 280

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
             P+ +T VS++S C+ +  L  G++ H   IK   S+  S      VI++LI MY++C 
Sbjct: 281 FRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVS------VISSLISMYSRCG 334

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            ++ +  +F  +  +N DV  W+ MI +Y  +G   +A+ LF QM +Q+KL + N  T  
Sbjct: 335 CLEYSLKVF--LECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQM-EQEKL-EANDVTFL 390

Query: 466 CALMACARLAALR-----FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             L AC+           F   +  Y ++ + E        C++D+  R G ++ A  + 
Sbjct: 391 SLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHY-----TCMVDLLGRYGSVEEAEALI 445

Query: 521 DNLKQR-NVVSWTSLMTGYGMH 541
            ++  + +V++W +L++   +H
Sbjct: 446 RSMPVKADVITWKTLLSACKIH 467



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 214/521 (41%), Gaps = 86/521 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA++   ++    +    LF +M   G+ PDE+    VL+ C  L +   G  VH  + 
Sbjct: 152 WNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVR 211

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GF+ N+ V ++L  MY +C +L    +L   M      ++V+WNT++A  AQ+G  E 
Sbjct: 212 KCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQ---NVVAWNTLIAGRAQNGYPEE 268

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L  +  M      + D ++ V+ +S+C+ L T  +G+Q  +  E  K    + V  + S
Sbjct: 269 VLDQY-NMMKMAGFRPDKITFVSVISSCSELATLGQGQQ--IHAEVIKAGASLIVSVISS 325

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              +++ YSR G  E +  +F  +  EN   +VV WS++IA Y   G G EA+D+F QM+
Sbjct: 326 ---LISMYSRCGCLEYSLKVF--LECENG--DVVCWSSMIAAYGFHGRGVEAIDLFNQME 378

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              LE N VT +SLL  C           +HC          G     +   + +++ Y 
Sbjct: 379 QEKLEANDVTFLSLLYAC-----------SHC----------GLKEKGIKFFDLMVEKY- 416

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
                         + P+   +  +T M+    + G   +A AL   M      VK +  
Sbjct: 417 -------------GVKPR---LEHYTCMVDLLGRYGSVEEAEALIRSM-----PVKADVI 455

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD--IDTARVVF 520
           T    L AC         R+I   V R      +P+V    I    +  D   D  + + 
Sbjct: 456 TWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMR 515

Query: 521 D-NLKQRNVVSWTSLMTGYGMHGLGDKAH-----------WAFDQMRKEGLAPDGVTFLV 568
           D  LK+   +SW  +        +GDK+H               +M+K G  PD      
Sbjct: 516 DRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPD------ 569

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
                     +D  L   D   KE+ +   +E  A    LL
Sbjct: 570 ----------IDSVLHDMDVEDKEYSLVHHSEKLAIAFALL 600



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 179/416 (43%), Gaps = 54/416 (12%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A       +GH  +A D F    +   EP++ +   LL  C S  +L LGK+ H   I 
Sbjct: 25  TAEFTNLCSKGHLKQAFDRFSSHIWS--EPSLFS--HLLQSCISENSLSLGKQLHSLIIT 80

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN----------------- 421
              S       D  + N L+++Y+KC  +D A  +F  +  KN                 
Sbjct: 81  SGCS------SDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDW 134

Query: 422 ------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
                       R+VATW  M+    Q     + L LF +M +   L  P+ F L   L 
Sbjct: 135 VTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFL--PDEFALGSVLR 192

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            CA L AL  GRQ+H YV +  +E  +  V++ L  MY + G +     +   +  +NVV
Sbjct: 193 GCAGLRALVAGRQVHGYVRKCGFEFNLVVVSS-LAHMYMKCGSLGEGERLIRAMPSQNVV 251

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +W +L+ G   +G  ++    ++ M+  G  PD +TF+ ++ +CS    + QG +    +
Sbjct: 252 AWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEV 311

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNGCRIHANVE 648
            K  G S      + ++ +  R   L+ ++++   +  E   ++ W +++     H    
Sbjct: 312 IKA-GASLIVSVISSLISMYSRCGCLEYSLKVF--LECENGDVVCWSSMIAAYGFHGR-- 366

Query: 649 LGELAANRLLELESEK--DGSYTLLSNIYANAG---RWKDVARIRSLMKHTGVKKR 699
            G  A +   ++E EK      T LS +YA +    + K +     +++  GVK R
Sbjct: 367 -GVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPR 421



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 22/240 (9%)

Query: 90  LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149
           L R  PS  +V  WN LI    +   P+     +  M   G+ PD+ TF  V+ +C EL 
Sbjct: 241 LIRAMPSQ-NVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELA 299

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
           +   G  +HA +  +G    V V ++L++MY+RC  L Y+ ++F E  + G  D+V W++
Sbjct: 300 TLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLEC-ENG--DVVCWSS 356

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           ++AAY   G     + LF +M  + K++ + V+ ++ L AC+          CG+ E+  
Sbjct: 357 MIAAYGFHGRGVEAIDLFNQMEQE-KLEANDVTFLSLLYACS---------HCGLKEKGI 406

Query: 270 KVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           K F+ M  K  V      +  MV    R GS E+A AL + M    VK +V+TW  +++ 
Sbjct: 407 KFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSM---PVKADVITWKTLLSA 463


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/584 (38%), Positives = 340/584 (58%), Gaps = 48/584 (8%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-Q 342
           N ++  Y + G  +DA  LF ++   +     ++W++++    Q    H  L +F  M +
Sbjct: 42  NNLINMYGKCGLIQDALNLFNQLPHRDP----ISWASILTANNQANLPHLTLSMFPAMFK 97

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             GL+P+      L+  CA +GA+  GK+ H   I   +S      DD +V ++L+DMYA
Sbjct: 98  QDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVS------DDDVVKSSLVDMYA 151

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL------ 456
           KC   D+ RV+FD+I+ KN    +WT MI  Y+Q+G   DA+ LF +M  ++ L      
Sbjct: 152 KCGLPDIGRVVFDSISSKNS--ISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALI 209

Query: 457 --------------------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
                                     V P  F LS  + A A LA L  G+QIH  V+  
Sbjct: 210 SGLVQSGNWVDSFYLFMEMRSKGIDIVDP--FILSSIIGASANLAVLGLGKQIHCLVILL 267

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
            YE  + FV+N L+DMY++  D+  A+ +F  + QR++VSWTS++ G   HGL ++A   
Sbjct: 268 GYESSL-FVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSL 326

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           +++M   GL P+ VTF+ L+YACSH G+V +G  +F+SM K++GI+   +HY C++DLL 
Sbjct: 327 YNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLS 386

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           R+  L+EA  LI+ MP +P    W ALL+ C  H N  +G   A+ LL L+ E   +Y L
Sbjct: 387 RSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYIL 446

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSNIYA+A  W+ V+++R LM    VKK PG S +   + +  F  G+ +HP  ++I+ +
Sbjct: 447 LSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGL 506

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L   +K  GY+P TS  LHD++ +EK   LF HSE+LA+AYG+L   PG  + I KN
Sbjct: 507 LEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKN 566

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+CGDCH+ + FIS+I+  EI++RD+NR+HHFK+G C+C  +W
Sbjct: 567 LRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 213/432 (49%), Gaps = 49/432 (11%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           + L+AC    S   G  +H  I  +G D    + N L+ MY +C  +  A  LF+++   
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D +SW +I+ A  Q+      L +F  M     +Q D       + ACA LG   +G
Sbjct: 68  ---DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQG 124

Query: 260 KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           KQ                          CG+ +  + VF+ +  K+ +SW AM++GY++ 
Sbjct: 125 KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQS 184

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE-PNVVT 352
           G   DA  LF+KM  +    N+++W+A+I+G  Q G+  ++  +F +M+  G++  +   
Sbjct: 185 GRKLDAIQLFQKMPVK----NLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFI 240

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           L S++   A++  L LGK+ HC  I  +L  + S    L V NAL+DMYAKC  V  A+ 
Sbjct: 241 LSSIIGASANLAVLGLGKQIHCLVI--LLGYESS----LFVSNALVDMYAKCSDVLAAKK 294

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  +    RD+ +WT +I   +Q+G A +AL+L+ +M      +KPN  T    + AC+
Sbjct: 295 IFGRMV--QRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTG--LKPNEVTFVGLIYACS 350

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVV 529
            +  +  GR     ++++    + P + +  CL+D+ SRSG ++ A  +   +  + +  
Sbjct: 351 HVGLVSKGRYFFNSMIKDY--GINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEA 408

Query: 530 SWTSLMTGYGMH 541
           +W +L++    H
Sbjct: 409 TWAALLSACNHH 420



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 164/358 (45%), Gaps = 49/358 (13%)

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           LV  L  CA   +  +GK+ HC+ IK  +    S      + N LI+MY KC  +  A  
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKS------LSNNLINMYGKCGLIQDALN 59

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F+ +   +RD  +W  ++ + +Q    +  L++FP MF+QD L +P+ +  +C + ACA
Sbjct: 60  LFNQLP--HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL-QPDHYVFACLVKACA 116

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L A++ G+Q+HA  + +        V + L+DMY++ G  D  RVVFD++  +N +SWT
Sbjct: 117 ILGAMKQGKQVHATFIVSPVSD-DDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWT 175

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG-----------MVDQ 581
           ++++GY   G    A   F +M  + L    +++  L+     SG           M  +
Sbjct: 176 AMISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALISGLVQSGNWVDSFYLFMEMRSK 231

Query: 582 GLKYFDS--MSKEFGISAR------AEHYACIVDLLGRANRLDEAVELIE---------- 623
           G+   D   +S   G SA        +   C+V LLG  + L  +  L++          
Sbjct: 232 GIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLA 291

Query: 624 -----GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
                G  ++   + W +++ G   H   E      NR+L     K    T +  IYA
Sbjct: 292 AKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLS-TGLKPNEVTFVGLIYA 348



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 156/389 (40%), Gaps = 102/389 (26%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W +++    +  LP     +F  M ++ G  PD Y F  ++KAC  L + + G  VHA  
Sbjct: 72  WASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATF 131

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             S    +  V ++L+ MYA+C      R +FD +      + +SW  +++ YAQSG   
Sbjct: 132 IVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSK---NSISWTAMISGYAQSGRKL 188

Query: 222 GGLMLFARM-----------------TGD--------VKVQGDGVSLVNA------LSAC 250
             + LF +M                 +G+        ++++  G+ +V+       + A 
Sbjct: 189 DAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGAS 248

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           A+L     GKQ                          C  +  AKK+F RM  +D+VSW 
Sbjct: 249 ANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWT 308

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           +++ G ++ G  E+A +L+ +M    +K                                
Sbjct: 309 SIIVGTAQHGLAEEALSLYNRMLSTGLK-------------------------------- 336

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
              PN VT V L+  C+ VG +  G+    Y    ++   G +P  L     L+D+ ++ 
Sbjct: 337 ---PNEVTFVGLIYACSHVGLVSKGR----YFFNSMIKDYGINP-SLQHYTCLLDLLSRS 388

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             ++ A  +  A+ P   D ATW  ++ +
Sbjct: 389 GHLEEAENLIKAM-PFKPDEATWAALLSA 416



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 54/365 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I+ Y        A+ L Q++     ++  W ALI   V+     ++F LF++M  +G  
Sbjct: 177 MISGYAQSGRKLDAIQLFQKMPVK--NLLSWTALISGLVQSGNWVDSFYLFMEMRSKGID 234

Query: 133 -PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             D +    ++ A   L     G  +H ++   G++S++FV NAL+ MYA+C  +  A++
Sbjct: 235 IVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKK 294

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +F  M Q    DIVSW +I+   AQ G AE  L L+ RM     ++ + V+ V  + AC+
Sbjct: 295 IFGRMVQR---DIVSWTSIIVGTAQHGLAEEALSLYNRMLS-TGLKPNEVTFVGLIYACS 350

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            +G  S+G+                      +N+M+  Y    S +              
Sbjct: 351 HVGLVSKGR--------------------YFFNSMIKDYGINPSLQH------------- 377

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
                 ++ ++   ++ GH  EA ++ + M F   +P+  T  +LLS C      L+G  
Sbjct: 378 ------YTCLLDLLSRSGHLEEAENLIKAMPF---KPDEATWAALLSACNHHRNTLIGIR 428

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
                   +LS+    P   ++++ +    A  +SV   R +  A+  K ++     +++
Sbjct: 429 ----VADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVK-KEPGYSCIVL 483

Query: 432 GSYSQ 436
           G  SQ
Sbjct: 484 GKESQ 488


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/555 (40%), Positives = 329/555 (59%), Gaps = 44/555 (7%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N   W+A+I GYA +G   E+ + + +M+  G+ P   T  +L   C +   + LGK+ H
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------ 421
             TI     + G    DL V N++ID+Y KC  +  AR +FD ++ ++            
Sbjct: 166 AQTI-----LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYA 220

Query: 422 -----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
                            +D+  WT M+  Y+QNG   +AL  F +M  QD  ++ +  TL
Sbjct: 221 KYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKM--QDVGMETDEVTL 278

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIP----FVANCLIDMYSRSGDIDTARVVF 520
           +  + ACA+L A++    I     R+ +    P     V + LIDMYS+ G  D A  VF
Sbjct: 279 AGVISACAQLGAVKHANWIRDIAERSGFG---PSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           + +K+RNV S++S++ GY MHG    A   F  M K  + P+ VTF+ +L ACSH+G+V+
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           QG + F  M K FG++   +HYAC+VDLLGRA  L+EA++L++ MPMEP   +W ALL  
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CRIH N ++ ++AAN L +LE    G+Y LLSNIYA+AGRW++V+++R +++  G KK P
Sbjct: 456 CRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNP 515

Query: 701 GCSWVQGKEGTA-TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           GCSW +GK G    FF GD THP+S +I + L  L++R+++ GY P    A +D+ D+EK
Sbjct: 516 GCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEK 575

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             +L  HSEKLALAYG+L T  G  I+I KN+RIC DCH+ +   S I   EII+RD+ R
Sbjct: 576 ERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMR 635

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF  G+C+C  +W
Sbjct: 636 FHHFHNGTCSCGNFW 650



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 239/536 (44%), Gaps = 105/536 (19%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAP---SPALSLLQRISPSP 97
           +L  C   +Q+  +H  II   L+      + LI      + P    P L   Q   P+P
Sbjct: 48  ILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNP 107

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           F    W A+IR      L   +   + +M R G  P  +TF  + KACG   +   G  V
Sbjct: 108 F---LWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164

Query: 158 HA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           HA  I   GF S+++V N+++ +Y +C  L  AR++FDEM +    D+VSW  ++ AYA+
Sbjct: 165 HAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSER---DVVSWTELIVAYAK 221

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            GD                                             ME A  +F+ + 
Sbjct: 222 YGD---------------------------------------------MESASGLFDDLP 236

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           +KD+V+W AMVTGY++ G  ++A   F+KM+   ++ + VT + VI              
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI-------------- 282

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVIN 395
                                S CA +GA+      H   I+ +    G  P  +++V +
Sbjct: 283 ---------------------SACAQLGAV-----KHANWIRDIAERSGFGPSGNVVVGS 316

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           ALIDMY+KC S D A  +F+ +  K R+V +++ MI  Y+ +G A+ AL LF  M + + 
Sbjct: 317 ALIDMYSKCGSPDEAYKVFEVM--KERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE- 373

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            ++PN  T    L AC+    +  GRQ+ A + +       P    C++D+  R+G ++ 
Sbjct: 374 -IRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEE 432

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           A  +   +  + N   W +L+    +HG  D A  A +++ K  L P+G+   +LL
Sbjct: 433 ALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK--LEPNGIGNYILL 486



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           FPQ+  Q KL++   + L   L  C   + ++   Q+HA+++RN       +V   LI M
Sbjct: 31  FPQLQHQRKLLE---WRLMSILHDCTLFSQIK---QVHAHIIRNGLSQ-CSYVLTKLIRM 83

Query: 507 YSRSGDIDTAR---VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
            ++  D+       +VF  +   N   WT+++ GY + GL  ++   + +MR++G+ P  
Sbjct: 84  LTKV-DVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVS 142

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
            TF  L  AC  +  +D G +         G ++       ++DL  +   L  A ++ +
Sbjct: 143 FTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD 202

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAGRWK 682
            M  E   + W  L+     + ++E    +A+ L +    KD  ++T +   YA  GR K
Sbjct: 203 EMS-ERDVVSWTELIVAYAKYGDME----SASGLFDDLPLKDMVAWTAMVTGYAQNGRPK 257

Query: 683 DVARIRSLMKHTGVK 697
           +       M+  G++
Sbjct: 258 EALEYFQKMQDVGME 272


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/679 (35%), Positives = 370/679 (54%), Gaps = 57/679 (8%)

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
           YARQ+FD + QP    +  WNT++  Y++    + G+ ++  M     ++ D  +    L
Sbjct: 59  YARQVFDAIPQP---TLFIWNTMIKGYSRINHPQNGVSMYLLMLAS-NIKPDRFTFPFLL 114

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV-TGYSRIGSFEDAFALFKKM 306
                     +G    M  +  KV     VK     N  V   +  + S      L +K+
Sbjct: 115 ----------KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKV 164

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
                   VVTW+ +++GY +     ++  +F +M+  G+ PN VTLV +LS C+ +  L
Sbjct: 165 FDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDL 224

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             GK  + Y    ++        +L++ N LIDM+A C  +D A+ +FD +  KNRDV +
Sbjct: 225 EGGKHIYKYINGGIVE------RNLILENVLIDMFAACGEMDEAQSVFDNM--KNRDVIS 276

Query: 427 WTVMIGSYSQNGGAN-------------------------------DALALFPQMFQQDK 455
           WT ++  ++  G  +                               +ALALF +M  Q  
Sbjct: 277 WTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREM--QMS 334

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            VKP+ FT+   L ACA L AL  G  +  Y+ +N  +    FV N LIDMY + G++  
Sbjct: 335 NVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN-DTFVGNALIDMYFKCGNVGK 393

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A+ VF  +  ++  +WT+++ G  ++G G++A   F  M +  + PD +T++ +L AC+H
Sbjct: 394 AKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTH 453

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +GMV++G  +F SM+ + GI     HY C+VDLLGRA RL+EA E+I  MP++P  I+W 
Sbjct: 454 AGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWG 513

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           +LL  CR+H NV+L E+AA ++LELE E    Y LL NIYA   RW+++ ++R LM   G
Sbjct: 514 SLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERG 573

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCS ++       F  GD++HPQS++IY  L  ++Q +   GY P TS    D+ 
Sbjct: 574 IKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLG 633

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +E+K   L+ HSEKLA+AY ++++ PG  IRI KNLR+C DCH     +S   N E+I+R
Sbjct: 634 EEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVR 693

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D  RFHHF+ GSC+C  +W
Sbjct: 694 DKTRFHHFRHGSCSCNNFW 712



 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 275/563 (48%), Gaps = 61/563 (10%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSP--ALSLLQRISPSPF 98
           LL +CKS+ Q+  IH   I   L+  P     +IA   +H +     A  +   I P P 
Sbjct: 13  LLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAI-PQP- 70

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV- 157
           ++F WN +I+   R+  P N   ++L M+     PD +TFPF+LK      + + G  + 
Sbjct: 71  TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 158 -HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
            HAV    GFDSN+FV  A + M++ C  +  AR++FD        ++V+WN +++ Y +
Sbjct: 131 NHAV--KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFD---MGDAWEVVTWNIMLSGYNR 185

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
               +   MLF  M     V  + V+LV  LSAC+ L     GK                
Sbjct: 186 VKQFKKSKMLFIEMEKR-GVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLI 244

Query: 262 -----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                      CG M+EA+ VF+ MK +DV+SW ++VTG++ IG  + A   F ++ +  
Sbjct: 245 LENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPER- 303

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              + V+W+A+I GY +     EAL +FR+MQ   ++P+  T+VS+L+ CA +GAL LG+
Sbjct: 304 ---DYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGE 360

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
               Y  K       S  +D  V NALIDMY KC +V  A+ +F  +   ++D  TWT M
Sbjct: 361 WVKTYIDK------NSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM--HHKDKFTWTAM 412

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I   + NG   +ALA+F  M +    + P+  T    L AC     +  G+    ++   
Sbjct: 413 IVGLAINGHGEEALAMFSNMIEAS--ITPDEITYIGVLCACTHAGMVEKGQSF--FISMT 468

Query: 491 QYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKA 547
               + P V +  C++D+  R+G ++ A  V  N+  + N + W SL+    +H     A
Sbjct: 469 MQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLA 528

Query: 548 HWAFDQMRKEGLAPDGVTFLVLL 570
             A  Q+ +  L P+     VLL
Sbjct: 529 EMAAKQILE--LEPENGAVYVLL 549



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 27/267 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I   +R+     A  LF +M      PDE+T   +L AC  L +   G  V   I 
Sbjct: 308 WTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYID 367

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +   ++ FV NAL+ MY +C  +  A+++F EM      D  +W  ++   A +G  E 
Sbjct: 368 KNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK---DKFTWTAMIVGLAINGHGEE 424

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            L +F+ M  +  +  D ++ +  L AC            GM+E+ +  F  M ++    
Sbjct: 425 ALAMFSNMI-EASITPDEITYIGVLCACT---------HAGMVEKGQSFFISMTMQHGIK 474

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +V  +  MV    R G  E+A  +   M    VK N + W +++   A R H +  L  
Sbjct: 475 PNVTHYGCMVDLLGRAGRLEEAHEVIVNMP---VKPNSIVWGSLLG--ACRVHKNVQLAE 529

Query: 338 FRQMQFCGLEPN----VVTLVSLLSGC 360
               Q   LEP      V L ++ + C
Sbjct: 530 MAAKQILELEPENGAVYVLLCNIYAAC 556


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 344/577 (59%), Gaps = 21/577 (3%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGS-FEDAFALFKKMRQENVKLNVVTWSAVIA 323
           + +A  +F  +   D+ S N +++  SR       A  LF +M Q +       WSA+++
Sbjct: 79  LPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDH----FAWSALVS 134

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEP------NVVTLVSLLSGCASVGALLLGKETHCYTI 377
           GY + G    AL ++R+MQ    EP      N  T  S L+  A+      G+E HC+ +
Sbjct: 135 GYTRHGQPEAALALYRRMQ---EEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVV 191

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +R +   G    D ++ +AL DMYAKC  VD AR +FD +    RD  +WT M+  Y   
Sbjct: 192 RRGIDAAGG---DAVLWSALADMYAKCGRVDDARRVFDRMPV--RDAVSWTAMVERYFDG 246

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   +   LF  M +  + V+PN FT +  L ACA+ A   FGRQ+H  + ++       
Sbjct: 247 GRGGEGFRLFLHMLRT-RGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSC- 304

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F  + L+ MYS+ GD+ +A  VF+ + + ++VSWT++++GY  +G  ++A   FD   + 
Sbjct: 305 FAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRS 364

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ PD VTF+ +L AC+H+G+VD+GL+ F S+ +++ I   A+HYAC++DLL R+ + + 
Sbjct: 365 GIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFER 424

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A ++I  M ++P   +W +LL GCRIH NV L   AA  L E+E E   +Y  L+NIYA+
Sbjct: 425 AEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYAS 484

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            G + +V  +R +M+  G+ K P  SW++       F VGD++HP++ +IY +L  L  +
Sbjct: 485 VGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVK 544

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +   GYV    F LHDV+DE+K   +  HSE+LA+A+GI+ T  G+PI++ KNLRICGDC
Sbjct: 545 MVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDC 604

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+AI  IS I+  +II+RDSNRFHHFK+G C+C+ YW
Sbjct: 605 HAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 130/309 (42%), Gaps = 46/309 (14%)

Query: 79  SHNAPSPALSLLQRISPSPFSVF---------WWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           SHN    ALS   R  PS   +F          W+AL+    R   P+ A  L+ +M   
Sbjct: 96  SHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEE 155

Query: 130 GWHP---DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS---NVFVCNALMAMYARC 183
             +    +E+T    L A       R G  +H  +   G D+   +  + +AL  MYA+C
Sbjct: 156 PGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKC 215

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             +  AR++FD M    + D VSW  +V  Y   G    G  LF  M     V+ +  + 
Sbjct: 216 GRVDDARRVFDRM---PVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTY 272

Query: 244 VNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKV 277
              L ACA     S G+Q                          CG M  A +VFE M  
Sbjct: 273 AGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAK 332

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+VSW A+++GY++ G  E+A   F    +  +K + VT+  V++  A  G   + L++
Sbjct: 333 PDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEI 392

Query: 338 FRQM--QFC 344
           F  +  Q+C
Sbjct: 393 FHSIKEQYC 401


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 266/744 (35%), Positives = 401/744 (53%), Gaps = 48/744 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR-CGSSVHAVI 161
           W A+     R      + RL  +M+  G  P+ +T     +AC      R  G  V   +
Sbjct: 111 WTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFV 170

Query: 162 CSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             +GF  ++V V  AL+ M+AR   L  A+++FD + +      V W  ++  Y Q+G A
Sbjct: 171 LKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIER---TSVVWTLLITRYVQAGCA 227

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKD 279
              + LF  M  D   + DG S+ + +SAC  LG+   G+Q         V  R+  V D
Sbjct: 228 SKVVELFLHMLDD-GFEPDGYSMSSMISACTELGSVRLGQQL------HSVALRLGLVSD 280

Query: 280 VVSWNAMVTGYSRIG---SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG-HGHEAL 335
                 +V  Y+++    S E A  +FK M + NV    ++W+A+I+GY Q G   +  +
Sbjct: 281 SCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNV----MSWTALISGYVQSGVQENNVM 336

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +FR+M    + PN +T  +LL  CA++     G++ H + +K  ++    H +  +V N
Sbjct: 337 ALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIA----HVN--VVGN 390

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKN-----RDVATWTVMIGSYSQNGGANDALALFPQM 450
           AL+ MYA+   ++ AR  FD +   N      DV T        S+  G +D ++     
Sbjct: 391 ALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVS----- 445

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                      FT +  L A A +  L  G+++HA  ++  +      ++N L+ MY+R 
Sbjct: 446 ----------TFTFASLLSAAASVGLLTKGQKLHALSMKAGFRS-DQGISNSLVSMYARC 494

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G ++ A   FD +K  NV+SWTS+++G   HG   +A   F  M   G+ P+ VT++ +L
Sbjct: 495 GYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVL 554

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            ACSH G+V +G ++F SM K+ G+  R EHYACIVDLL R+  ++EA + I  MP +  
Sbjct: 555 SACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKAD 614

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
            ++W  LL+ CR + N E+GE+AAN ++ LE      Y LLSN+YA+AG W +VARIRSL
Sbjct: 615 ALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSL 674

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           M+   + K  G SW+        F  GD +HP +  IY  L  L++ IK +GYVP TS  
Sbjct: 675 MRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIV 734

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHD+ +E K   L +HSEK+A+A+G++TT+   P+RI KNLR+C DCHSAI +IS     
Sbjct: 735 LHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGR 794

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EIILRDSNRFH  K+G C+C  YW
Sbjct: 795 EIILRDSNRFHRMKDGICSCGEYW 818



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/503 (28%), Positives = 246/503 (48%), Gaps = 44/503 (8%)

Query: 152 RCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
           R G ++H  ++ S   D++  V N+L+ MY++C  +  AR++FD+M   G+ D+VSW  +
Sbjct: 57  RLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC--GVRDLVSWTAM 114

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC--ASLGTWSRGKQCGMMEEA 268
            +  A++G AE   +       ++ ++ +  +L  A  AC    L   + G   G +   
Sbjct: 115 ASCLARNG-AERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFV--L 171

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           K  F      DV    A++  ++R G    A  +F  +    ++   V W+ +I  Y Q 
Sbjct: 172 KTGFWG---TDVSVGCALIDMFARNGDLVAAQRVFDGL----IERTSVVWTLLITRYVQA 224

Query: 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           G   + +++F  M   G EP+  ++ S++S C  +G++ LG++ H   ++  L  D    
Sbjct: 225 GCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSC-- 282

Query: 389 DDLMVINALIDMYAKCK---SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GANDAL 444
               V   L+DMYAK K   S++ AR +F  +   N  V +WT +I  Y Q+G   N+ +
Sbjct: 283 ----VSCGLVDMYAKLKMERSMEHARKVFKTMPRHN--VMSWTALISGYVQSGVQENNVM 336

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
           ALF +M  +   ++PN  T S  L ACA L+    GRQIHA+VL+      +  V N L+
Sbjct: 337 ALFREMLNES--IRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAH-VNVVGNALV 393

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            MY+ SG ++ AR  FD L + N++S +          +  + + A    + EG+  DGV
Sbjct: 394 SMYAESGCMEEARKAFDQLYETNILSMSP--------DVETERNNASCSSKIEGM-DDGV 444

Query: 565 ---TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
              TF  LL A +  G++ +G K   ++S + G  +       +V +  R   L++A   
Sbjct: 445 STFTFASLLSAAASVGLLTKGQK-LHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRA 503

Query: 622 IEGMPMEPTPIIWVALLNGCRIH 644
            + M  +   I W ++++G   H
Sbjct: 504 FDEMK-DHNVISWTSIISGLAKH 525



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 24/311 (7%)

Query: 344 CGLEPNVVTLV----------SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           C L P    LV           LL+  A  G L LG+  H    +R+L  +     D +V
Sbjct: 24  CHLNPLTAHLVLSSDHSCDAAKLLTSAARAGDLRLGRALH----RRLLRSE-ILDTDAVV 78

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            N+L+ MY+KC +V+ AR +FD +    RD+ +WT M    ++NG   ++L L  +M + 
Sbjct: 79  ANSLLTMYSKCGAVEAARRVFDQMCGV-RDLVSWTAMASCLARNGAERESLRLLGEMLEL 137

Query: 454 DKLVKPNAFTLSCALMACARLAALRF-GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
              ++PNAFTL  A  AC      R  G  +  +VL+  +      V   LIDM++R+GD
Sbjct: 138 --GLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGD 195

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           +  A+ VFD L +R  V WT L+T Y   G   K    F  M  +G  PDG +   ++ A
Sbjct: 196 LVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISA 255

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR---ANRLDEAVELIEGMPMEP 629
           C+  G V  G +   S++   G+ + +     +VD+  +      ++ A ++ + MP   
Sbjct: 256 CTELGSVRLG-QQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHN 314

Query: 630 TPIIWVALLNG 640
             + W AL++G
Sbjct: 315 V-MSWTALISG 324


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/667 (36%), Positives = 369/667 (55%), Gaps = 28/667 (4%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F+ N L+ MY++ D L+ A+ +        +  +V+W ++++    +      L+ F  M
Sbjct: 43  FLSNHLVNMYSKLDLLNSAQHVLS---LTHLRTVVTWTSLISGCVHNRRFLPALLHFTNM 99

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTG 289
             D  VQ +  +      A A +     GKQ  G+  +   ++      DV    +    
Sbjct: 100 RRD-NVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIY------DVFVGCSCFDM 152

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y + G   DA  +F +M Q N+     TW+A I+   Q     +A+  F++      EPN
Sbjct: 153 YCKTGFRGDACNMFDEMPQRNL----ATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPN 208

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            +T  + L+ C  +  L LG++ H + ++        + +D+ V N LID Y KC  +  
Sbjct: 209 SITFCAFLNACVDMVRLNLGRQLHAFIVR------CGYKEDVSVANGLIDFYGKCGDIVS 262

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A ++F+ I  + ++V +W  M+ +  QN     A  +F    Q  K V+P  F +S  L 
Sbjct: 263 AEMVFNRIGNR-KNVVSWCSMLAALVQNHEEERACMVF---LQARKEVEPTDFMISSVLS 318

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           ACA L  L  GR +HA  ++   E  I FV + L+DMY + G I+ A  VF  L +RN+V
Sbjct: 319 ACAELGGLELGRSVHALAVKACVEDNI-FVGSALVDMYGKCGSIENAEQVFSELPERNLV 377

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMR--KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           +W +++ GY   G  D A   F++M     G+ P  VT + +L  CS  G V++G++ F+
Sbjct: 378 TWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFE 437

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           SM   +GI   AEH+AC+VDLLGR+  +D A E I+ M ++PT  +W ALL  CR+H   
Sbjct: 438 SMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKT 497

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           ELG++AA +L EL+    G++ +LSN+ A+AGRW++   +R  MK  G+KK  G SW+  
Sbjct: 498 ELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAV 557

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
           K     F   D +H ++ +I  +L  L   +K  GYVP T+ +L D++DEEK   ++ HS
Sbjct: 558 KNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHS 617

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EK+ALA+G++    G PIRITKNLRICGDCHSAI FIS I+  EII+RD++RFH FK+G 
Sbjct: 618 EKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGC 677

Query: 828 CTCKGYW 834
           C+CK YW
Sbjct: 678 CSCKDYW 684



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 223/500 (44%), Gaps = 45/500 (9%)

Query: 56  IHQQIIVQNLTHVPP---SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVR 112
           IH  II  ++T +P    +HL+  Y   +  + A  +L        +V  W +LI   V 
Sbjct: 28  IHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLR--TVVTWTSLISGCVH 85

Query: 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
            R    A   F  M R    P+++TFP V KA   +     G  +H +    G   +VFV
Sbjct: 86  NRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
             +   MY +      A  +FDEM Q    ++ +WN  ++   Q   +   ++ F     
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQR---NLATWNAYISNAVQDRRSLDAIVAFKEFLC 202

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNA 285
            V  + + ++    L+AC  +   + G+Q       CG  E            DV   N 
Sbjct: 203 -VHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKE------------DVSVANG 249

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y + G    A  +F ++     + NVV+W +++A   Q      A  VF Q +   
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGN---RKNVVSWCSMLAALVQNHEEERACMVFLQARK-E 305

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           +EP    + S+LS CA +G L LG+  H   +K  +       D++ V +AL+DMY KC 
Sbjct: 306 VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVE------DNIFVGSALVDMYGKCG 359

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           S++ A  +F  +  +N  + TW  MIG Y+  G  + AL LF +M      ++P+  TL 
Sbjct: 360 SIENAEQVFSELPERN--LVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLI 417

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNL 523
             L  C+R+ A+  G QI    +R  Y  + P   +  C++D+  RSG +D A     N+
Sbjct: 418 SILSVCSRVGAVERGIQIFES-MRLNYG-IEPGAEHFACVVDLLGRSGLVDRAYEFIQNM 475

Query: 524 KQRNVVS-WTSLMTGYGMHG 542
             +  +S W +L+    MHG
Sbjct: 476 AIQPTISVWGALLGACRMHG 495



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 24/243 (9%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W +++   V+    + A  +FLQ  R+   P ++    VL AC EL     G SVH
Sbjct: 275 NVVSWCSMLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSVH 333

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A+   +  + N+FV +AL+ MY +C ++  A Q+F E+ +    ++V+WN ++  YA  G
Sbjct: 334 ALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPER---NLVTWNAMIGGYAHQG 390

Query: 219 DAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           D +  L LF  MT G   ++   V+L++ LS C+ +G   RG Q         +FE M++
Sbjct: 391 DIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQ---------IFESMRL 441

Query: 278 KDVVSWNA-----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
              +   A     +V    R G  + A+   + M    ++  +  W A++   A R HG 
Sbjct: 442 NYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMA---IQPTISVWGALLG--ACRMHGK 496

Query: 333 EAL 335
             L
Sbjct: 497 TEL 499



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 14/223 (6%)

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           L SLL    S    +LG+  H + I+  ++     P    + N L++MY+K   ++ A+ 
Sbjct: 9   LGSLLESAVSTHCSILGRTIHAHIIRTHVT-----PLPSFLSNHLVNMYSKLDLLNSAQH 63

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +        R V TWT +I     N     AL  F  M + +  V+PN FT  C   A A
Sbjct: 64  VLS--LTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDN--VQPNDFTFPCVFKASA 119

Query: 473 RLAALRFGRQIHAYVLRNQ--YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
            +     G+QIH   L+    Y++   FV     DMY ++G    A  +FD + QRN+ +
Sbjct: 120 FVQIPMTGKQIHGLALKGGMIYDV---FVGCSCFDMYCKTGFRGDACNMFDEMPQRNLAT 176

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           W + ++          A  AF +       P+ +TF   L AC
Sbjct: 177 WNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNAC 219


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/551 (39%), Positives = 331/551 (60%), Gaps = 16/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N+++  Y + GS  +A  +F KMR    K ++V+W+++IAGYAQ     EA+ +   M  
Sbjct: 90  NSLIHLYCKCGSVVEAHKVFDKMR----KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLK 145

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
              +PN  T  SLL    +     +G + H       L+V     +D+ V +AL+DMYA+
Sbjct: 146 GRFKPNGFTFASLLKAAGAYADSGIGGQIHA------LAVKCDWHEDVYVGSALLDMYAR 199

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +D+A  +FD +  KN    +W  +I  +++ G    AL +F +M  Q    +   FT
Sbjct: 200 CGKMDMATAVFDKLDSKNG--VSWNALISGFARKGDGETALMVFAEM--QRNGFEATHFT 255

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            S      A + AL  G+ +HA++++++ + L  FV N ++DMY++SG +  AR VF+ +
Sbjct: 256 YSSIFSGLAGIGALEQGKWVHAHMVKSR-QKLTAFVGNTMLDMYAKSGSMIDARKVFERV 314

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
             +++V+W S++T +  +GLG +A   F++MRK G+  + +TFL +L ACSH G+V +G 
Sbjct: 315 LNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGK 374

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YFD M KE+ +    EHY  +VDLLGRA  L+ A+  I  MPMEPT  +W ALL  CR+
Sbjct: 375 HYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRM 433

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N ++G+ AA+ + +L+ +  G   LL NIYA+ G W   AR+R +MK TGVKK P CS
Sbjct: 434 HKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACS 493

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           WV+       F   D THP++++IY++   +  +I+  GYVP   + L  VD++E+   L
Sbjct: 494 WVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANL 553

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEK+ALA+ ++    G  IRI KN+RICGDCHSA  +IS +   EI++RD+NRFHHF
Sbjct: 554 QYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHF 613

Query: 824 KEGSCTCKGYW 834
             GSC+C  YW
Sbjct: 614 SNGSCSCGDYW 624



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 209/467 (44%), Gaps = 81/467 (17%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P    +   + AC +  +      +H  + SS F+ + F+ N+L+ +Y +C ++  A ++
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSG-DAEGGLMLFARMTGDVKVQG-DGVSLVNALSAC 250
           FD+M +    D+VSW +++A YAQ+   AE   +L   + G  K  G    SL+ A  A 
Sbjct: 109 FDKMRKK---DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 251 ASLG------------TWSRG-----------KQCGMMEEAKKVFERMKVKDVVSWNAMV 287
           A  G             W               +CG M+ A  VF+++  K+ VSWNA++
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
           +G++R G  E A  +F +M++   +    T+S                            
Sbjct: 226 SGFARKGDGETALMVFAEMQRNGFEATHFTYS---------------------------- 257

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
                  S+ SG A +GAL  GK  H + +K    +         V N ++DMYAK  S+
Sbjct: 258 -------SIFSGLAGIGALEQGKWVHAHMVKSRQKLTA------FVGNTMLDMYAKSGSM 304

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
             AR +F+ +   N+D+ TW  M+ +++Q G   +A++ F +M +    +  N  T  C 
Sbjct: 305 IDARKVFERVL--NKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG--IYLNQITFLCI 360

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARV-VFDNLK 524
           L AC+    ++ G+  H + +  +Y  L P + +   ++D+  R+G ++ A V +F    
Sbjct: 361 LTACSHGGLVKEGK--HYFDMIKEYN-LEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPM 417

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           +     W +L+    MH       +A D + +  L PD     VLLY
Sbjct: 418 EPTAAVWGALLAACRMHKNAKVGQFAADHVFQ--LDPDDSGPPVLLY 462



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 175/397 (44%), Gaps = 65/397 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +LI    +  +P  A  L   M++  + P+ +TF  +LKA G    S  G  +HA+  
Sbjct: 120 WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAV 179

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +  +V+V +AL+ MYARC  +  A  +FD++      + VSWN +++ +A+ GD E 
Sbjct: 180 KCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK---NGVSWNALISGFARKGDGET 236

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            LM+FA M  +   +    +  +  S  A +G   +GK                      
Sbjct: 237 ALMVFAEMQRN-GFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G M +A+KVFER+  KD+V+WN+M+T +++ G  ++A + F++MR+  + LN +
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLLS--------------- 358
           T+  ++   +  G   E    F  ++   LEP +   VT+V LL                
Sbjct: 356 TFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKM 415

Query: 359 ----GCASVGALLLGKETH------CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
                 A  GALL     H       +    V  +D   PDD      L ++YA     D
Sbjct: 416 PMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD---PDDSGPPVLLYNIYASTGHWD 472

Query: 409 VA---RVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
            A   R M  A   K     +W V IG+      AND
Sbjct: 473 AAARVRKMMKATGVKKEPACSW-VEIGNSVHMFVAND 508



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P        + ACA+   L   R+IH ++  +++E    F+ N LI +Y + G +  A  
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEG-DAFLDNSLIHLYCKCGSVVEAHK 107

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD ++++++VSWTSL+ GY  + +  +A      M K    P+G TF  LL A      
Sbjct: 108 VFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA--GAY 165

Query: 579 VDQGL-KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            D G+     +++ +          + ++D+  R  ++D A  + + +      + W AL
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSWNAL 224

Query: 638 LNG 640
           ++G
Sbjct: 225 ISG 227


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 339/577 (58%), Gaps = 21/577 (3%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G  + +  +F  M  ++V+S+N ++ GY ++G  E A  LF +M + N+     TW+A
Sbjct: 109 KLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNI----ATWNA 164

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK-- 378
           +IAG  Q     +AL +F++M   G  P+  TL S+L GCA + +LL G+E H   +K  
Sbjct: 165 MIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCG 224

Query: 379 -RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
             + SV GS         +L  MY K  S+     +  ++    R V  W  +I   +QN
Sbjct: 225 FELSSVVGS---------SLAHMYIKSGSLSDGEKLIKSMPI--RTVVAWNTLIAGKAQN 273

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   + L  +  M       +P+  T    L AC+ LA L  G+QIHA V++     ++ 
Sbjct: 274 GCPEEVLNQYNMMKMAG--FRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLA 331

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            V++ LI MYSRSG ++ +   F + +  +VV W+S++  YG HG G++A   F QM   
Sbjct: 332 VVSS-LISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDL 390

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
            +  + VTFL LLYACSHSG+ ++G +YFD M K++ +  R EHY C+VDLLGRA RL+E
Sbjct: 391 KMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEE 450

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A  +I  MP++P  IIW  LL  C++H   E+ E  +  +++L+     SY LLSNI+A+
Sbjct: 451 AEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHAS 510

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
           A  W +V++IR  M+   V+K PG SW++ K     F +GD++HPQ  +I   L  L+  
Sbjct: 511 ARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSE 570

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +K  GYVP+    LHD+D+EEK   L  HSEK A+A+ ++ T+   PIR+ KNLR+C DC
Sbjct: 571 LKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDC 630

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+AI  IS I N EII+RD++RFHHFK+G C+C  YW
Sbjct: 631 HNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 186/402 (46%), Gaps = 24/402 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y+       A  L   +S    +   WNA+I    +      A  LF +M   G+ 
Sbjct: 134 LINGYLQLGDLESAQKLFDEMSERNIAT--WNAMIAGLTQFEFNKQALSLFKEMYGLGFL 191

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE+T   VL+ C  L S   G  VHA +   GF+ +  V ++L  MY +  +LS   +L
Sbjct: 192 PDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKL 251

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
              M    I  +V+WNT++A  AQ+G  E  L  +  M      + D ++ V+ LSAC+ 
Sbjct: 252 IKSM---PIRTVVAWNTLIAGKAQNGCPEEVLNQY-NMMKMAGFRPDKITFVSVLSACSE 307

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L T  +G+Q  +  E  K      V  VVS  ++++ YSR G  ED+   F  + +EN  
Sbjct: 308 LATLGQGQQ--IHAEVIKAGAS-SVLAVVS--SLISMYSRSGCLEDSIKAF--VDREN-- 358

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            +VV WS++IA Y   G G EAL++F QM+   +E N VT +SLL  C+  G    G E 
Sbjct: 359 FDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEY 418

Query: 373 HCYTIKRV-LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
               +K+  L     H         ++D+  +   ++ A  M  ++ P   D   W  ++
Sbjct: 419 FDLMVKKYKLKPRIEH------YTCVVDLLGRAGRLEEAEGMIRSM-PVQPDGIIWKTLL 471

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
            +   +  A  A  +  ++ + D L    ++ L   + A AR
Sbjct: 472 AACKLHKEAEMAERISEEIIKLDPL-DAASYVLLSNIHASAR 512



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 218/478 (45%), Gaps = 76/478 (15%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA------------ 181
           D   F  +L++C +L S   G  VH++I +SG   + F+ N L+  Y+            
Sbjct: 61  DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120

Query: 182 ----RCDTLSY---------------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               R + +S+               A++LFDEM +    +I +WN ++A   Q    + 
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSER---NIATWNAMIAGLTQFEFNKQ 177

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERM 275
            L LF  M G +    D  +L + L  CA L +   G++       CG            
Sbjct: 178 ALSLFKEMYG-LGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCG-----------F 225

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           ++  VV  +++   Y + GS  D   L K M        VV W+ +IAG AQ G   E L
Sbjct: 226 ELSSVVG-SSLAHMYIKSGSLSDGEKLIKSMPIR----TVVAWNTLIAGKAQNGCPEEVL 280

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           + +  M+  G  P+ +T VS+LS C+ +  L  G++ H   IK   S        L V++
Sbjct: 281 NQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGAS------SVLAVVS 334

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +LI MY++   ++ +   F  +  +N DV  W+ MI +Y  +G   +AL LF QM  +D 
Sbjct: 335 SLISMYSRSGCLEDSIKAF--VDRENFDVVLWSSMIAAYGFHGRGEEALELFHQM--EDL 390

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDI 513
            ++ N  T    L AC+       G +    +++ +Y+ L P + +  C++D+  R+G +
Sbjct: 391 KMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVK-KYK-LKPRIEHYTCVVDLLGRAGRL 448

Query: 514 DTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVL 569
           + A  +  ++  Q + + W +L+    +H   + A    +++ K  L P D  ++++L
Sbjct: 449 EEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIK--LDPLDAASYVLL 504



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 47/222 (21%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F  S  L +C +L +L  G+Q+H+ ++ +       F++N L++ YS+ G   ++ V
Sbjct: 62  PSLF--SHLLQSCIKLGSLFGGKQVHSLIITSGGSK-DKFISNHLLNFYSKLGQFKSSLV 118

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F N+ +RNV+S+  L+ GY   G  + A   FD+M +  +A    T+  ++   +    
Sbjct: 119 LFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIA----TWNAMIAGLTQFEF 174

Query: 579 VDQGLKYFDSM------SKEFGIS-------------ARAEHYACIVD------------ 607
             Q L  F  M        EF +              A  E +AC++             
Sbjct: 175 NKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSS 234

Query: 608 ---LLGRANRLDEAVELIEGMPMEPTPIIWVALL-----NGC 641
              +  ++  L +  +LI+ MP+  T + W  L+     NGC
Sbjct: 235 LAHMYIKSGSLSDGEKLIKSMPIR-TVVAWNTLIAGKAQNGC 275


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/636 (39%), Positives = 354/636 (55%), Gaps = 37/636 (5%)

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMT--GDVKVQGDGVSLVNALSACASLGTWSRGKQC-G 263
           WNT +   A+       L L+ +M   GD   + +  +   AL +CA+L     G Q  G
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGD---RPNAFTFPFALKSCAALSLPILGSQFHG 73

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT--WSAV 321
            + +   VFE      ++S       Y +    ++A    +K+ +EN     +T  ++A+
Sbjct: 74  QITKVGCVFEPFVQTGLISM------YCKGSLVDNA----RKVFEENFHSRKLTVCYNAL 123

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           ++GY       EA+ +FRQM   G+  N VTL+ L+  C S   L LG   HC T+K   
Sbjct: 124 VSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 183

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
                   D+ V+N  I MY KC SV+ A+ +FD +  K   + +W  M+  Y+QNG A 
Sbjct: 184 D------SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG--LISWNAMVSGYAQNGLAT 235

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           + L L+  M      V P+  TL   L +CA L A   G ++   +  + +    PF+ N
Sbjct: 236 NVLELYRNMDMNG--VHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTS-NPFLNN 292

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI+MY+R G++  A+ VFD + +R +VSWT+++ GYGMHG G+ A   F +M + G+ P
Sbjct: 293 ALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP 352

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           DG  F+ +L ACSH+G+ DQGL+YF  M + + +    EHY+C+VDLLGRA RL EA  L
Sbjct: 353 DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL 412

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           IE MP++P   +W ALL  C+IH NVEL ELA  R++ELE E  G Y LLSNIY+NA   
Sbjct: 413 IESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNS 472

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
           K V RIR +MK   +KK PGCS+V+ K     F VGDR H QS +IY +L  L   I   
Sbjct: 473 KGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQE 532

Query: 742 GYVPQTSFALHDVDDEEKGDLLFE---HSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
              P+      D  +E   D       HSEKLA+A+G+L T  G  + I KNLRIC DCH
Sbjct: 533 FGKPEK-----DNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCH 587

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                +S I++ ++ +RD+ RFHHF+ GSC+CK YW
Sbjct: 588 LFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/517 (26%), Positives = 228/517 (44%), Gaps = 76/517 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN  +R   +      A  L+ QM+R G  P+ +TFPF LK+C  L     GS  H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G     FV   L++MY +   +  AR++F+E F       V +N +V+ Y  +     
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL-TVCYNALVSGYVSNSKCSE 135

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            ++LF +M  +  V  + V+L+  + AC S      G                       
Sbjct: 136 AVLLFRQMNEE-GVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +CG +  A+K+F+ M VK ++SWNAMV+GY++ G   +   L++ M    V     
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV----- 249

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
                                          P+ VTLV +LS CA++GA  +G E     
Sbjct: 250 ------------------------------HPDPVTLVGVLSSCANLGAQSVGHEVE--- 276

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K   S   S+P    + NALI+MYA+C ++  A+ +FD +    R + +WT +IG Y  
Sbjct: 277 FKIQASGFTSNP---FLNNALINMYARCGNLTKAQAVFDGMP--ERTLVSWTAIIGGYGM 331

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G    A+ LF +M +    ++P+     C L AC+       G +    + RN      
Sbjct: 332 HGHGEIAVQLFKEMIRSG--IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 389

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           P   +C++D+  R+G +  A+ + +++  + +   W +L+    +H   + A  AF+++ 
Sbjct: 390 PEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVI 449

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +  L P+ + + VLL     +    +G+     M KE
Sbjct: 450 E--LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKE 484



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 188/395 (47%), Gaps = 24/395 (6%)

Query: 44  LRQCKSLTQVYL---IHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           L+ C +L+   L    H QI        P   + LI+ Y   +    A  + +    S  
Sbjct: 56  LKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRK 115

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
               +NAL+   V       A  LF QM   G   +  T   ++ AC    +   GSS+H
Sbjct: 116 LTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLH 175

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 GFDS+V V N  + MY +C +++YA++LFDEM   G   ++SWN +V+ YAQ+G
Sbjct: 176 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG---LISWNAMVSGYAQNG 232

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            A   L L+  M  +  V  D V+LV  LS+CA+LG  S G +     +A          
Sbjct: 233 LATNVLELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGF-----TS 286

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +    NA++  Y+R G+   A A+F  M +      +V+W+A+I GY   GHG  A+ +F
Sbjct: 287 NPFLNNALINMYARCGNLTKAQAVFDGMPER----TLVSWTAIIGGYGMHGHGEIAVQLF 342

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++M   G+EP+    V +LS C+  G    G E +   +KR   ++   P+     + ++
Sbjct: 343 KEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE-YFKMMKRNYQLEPG-PEHY---SCMV 397

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           D+  +   +  A+ + +++ P   D A W  ++G+
Sbjct: 398 DLLGRAGRLKEAQTLIESM-PIKPDGAVWGALLGA 431


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/550 (39%), Positives = 318/550 (57%), Gaps = 42/550 (7%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           NV ++SA+I  + Q      A   + QM  CG+EPN  T  S+L  C+    L  GK  H
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLH 164

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP-------------- 419
           C  IK  L        DL V   L+D+YA+   V  AR +FD +                
Sbjct: 165 CQAIKLGLG------SDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYS 218

Query: 420 ---------------KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
                          K RDV  W VMIG Y+Q+G  N++L LF +M     +  PN  T+
Sbjct: 219 KMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI--PNEVTV 276

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
              L AC +L AL  GR IH+Y+  N+   +   V   LIDMYS+ G ++ AR+VFD ++
Sbjct: 277 LAVLSACGQLGALESGRWIHSYI-ENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIR 335

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            ++VV+W S++ GY MHG    A   F++M + G  P  +TF+ +L AC H G+V++G  
Sbjct: 336 DKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRS 395

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           +F  M  ++GI  + EHY C+V+LLGRA  L+EA  L++ M +   P++W  LL  CR+H
Sbjct: 396 FFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            N++LGE  A  L++ +    G+Y LLSN+YA  G W+ VA++R+LMK  G++K  GCS 
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
           ++       F  G+R HP+S++IY +L  +   +KA GY PQT   LHD+ +E+K   L 
Sbjct: 516 IEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLE 575

Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
            HSEKLA+A+G+++T PGT ++I KNLR+C DCH+ +  IS I   +I++RD NRFHHF+
Sbjct: 576 VHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFE 635

Query: 825 EGSCTCKGYW 834
           +G C+C  YW
Sbjct: 636 DGLCSCGDYW 645



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 166/371 (44%), Gaps = 76/371 (20%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPF---- 98
           L+ + KS+  +  IH  ++ + L H P        + +     + + L R+  S F    
Sbjct: 53  LIDKSKSVAHLLQIHASLLRRGLYHNP--------ILNFKLQRSYAALGRLDCSVFVFNT 104

Query: 99  ----SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
               +VF ++A+I   V+ RL D AF  + QM+  G  P+ +TF  VLK+C    S   G
Sbjct: 105 FDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESG 160

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC------------ 202
             +H      G  S+++V   L+ +YAR   +  ARQLFD+M +  +             
Sbjct: 161 KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKM 220

Query: 203 ----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
                           D+V WN ++  YAQSG     L LF RM    K   + V+++  
Sbjct: 221 GELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML-VAKAIPNEVTVLAV 279

Query: 247 LSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDV 280
           LSAC  LG    G+                          +CG +E+A+ VF+R++ KDV
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDV 339

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           V+WN+M+ GY+  G  + A  LF++M +   K   +T+  +++     G   E    FR 
Sbjct: 340 VAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRL 399

Query: 341 MQ-FCGLEPNV 350
           M+   G+EP +
Sbjct: 400 MRDKYGIEPKI 410



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 21/229 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN +I    +  +P+ + +LF +M+     P+E T   VL ACG+L +   G  +H+
Sbjct: 238 VVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHS 297

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            I + G   NV V  AL+ MY++C +L  AR +FD +      D+V+WN+++  YA  G 
Sbjct: 298 YIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDK---DVVAWNSMIVGYAMHGF 354

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK- 278
           ++  L LF  MT +   +   ++ +  LSAC            G++EE +  F  M+ K 
Sbjct: 355 SQHALQLFEEMT-ETGHKPTDITFIGILSACG---------HGGLVEEGRSFFRLMRDKY 404

Query: 279 ----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
                +  +  MV    R G  E+A+ L K M    +  + V W  ++ 
Sbjct: 405 GIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNM---TIAADPVLWGTLLG 450


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 337/577 (58%), Gaps = 25/577 (4%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIG-SFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           + +A  +   +   DV S+N +V    R       A ALF +M + +      +WSA+++
Sbjct: 77  LPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDH----FSWSAIVS 132

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEP------NVVTLVSLLSGCASVGALLLGKETHCYTI 377
            +A+ G    AL ++R+M     EP      N  T  S L+   +      G+E HC+ +
Sbjct: 133 AHARHGQPRAALAIYRRML---REPGSAGVDNEFTASSALAAATAARCARAGRELHCHVV 189

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +R +  D       +V +AL DMYAKC  VD AR +FD +    RDV +WT M+  Y   
Sbjct: 190 RRGIDADA------VVWSALADMYAKCGRVDDARSVFDRMPV--RDVVSWTAMVERYFDA 241

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
               +   LF +M +    ++PN FT +  L ACA   + + G+Q+H  + +++      
Sbjct: 242 RRDGEGFRLFVRMLRSG--IQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSC- 298

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F  + L+ MYS+ GD+ TA  VF  + + ++VSWT++++GY  +G  D+A   FD + + 
Sbjct: 299 FAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRS 358

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G  PD VTF+ +L AC+H+G+VD+GL  F S+  E+GI   A+HYAC++DLL R+   + 
Sbjct: 359 GCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFER 418

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A E+I  M ++P   +W +LL GCRIH NV L   AA  L E+E E   +Y  L+NIYA+
Sbjct: 419 AEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYAS 478

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            G + +V   R +M+  G+ K P  SW++       F VGD+ HPQ++++Y +L  L  +
Sbjct: 479 VGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVK 538

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           ++  GYV  T F LHDV+DE+K   +  HSE+LA+A+GI+ T  G PI++ KNLRICGDC
Sbjct: 539 MREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDC 598

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+ I  IS I+  EII+RDSNRFHHFK GSC+C+ YW
Sbjct: 599 HTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 195/482 (40%), Gaps = 79/482 (16%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP---DEYTFPFVLKACGELPSSRCGSSV 157
           F W+A++    R   P  A  ++ +M+R        +E+T    L A      +R G  +
Sbjct: 125 FSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGREL 184

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   G D++  V +AL  MYA+C  +  AR +FD M    + D+VSW  +V  Y  +
Sbjct: 185 HCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRM---PVRDVVSWTAMVERYFDA 241

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMK 276
                G  LF RM     +Q +  +    L ACA   +   GKQ  G M +++       
Sbjct: 242 RRDGEGFRLFVRMLRS-GIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSR------A 294

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
                + +A+V  YS+ G    A  +F+ M     KL++V+W+A+I+GYAQ G   EAL 
Sbjct: 295 GDSCFAESALVHMYSKYGDMGTAVRVFRGM----PKLDLVSWTAMISGYAQNGQPDEALR 350

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F  +   G  P+ VT V +LS CA  G +  G                     L + ++
Sbjct: 351 YFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKG---------------------LSIFHS 389

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           + D Y    + D                  +  +I   S++G    A  +   M      
Sbjct: 390 IKDEYGIEHTAD-----------------HYACVIDLLSRSGLFERAEEMINTMS----- 427

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID-- 514
           VKPN F  +  L  C     +R  R     +   + E    +V   L ++Y+  G  D  
Sbjct: 428 VKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVT--LANIYASVGLFDEV 485

Query: 515 --TARVV-FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ-----------MRKEGLA 560
             T R++    + +    SW  + T   +  +GDK H   +Q           MR+EG  
Sbjct: 486 ENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYV 545

Query: 561 PD 562
            D
Sbjct: 546 AD 547



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 191/455 (41%), Gaps = 87/455 (19%)

Query: 161 ICSSGFDSNVFVCNALMAMYARCDT-LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           + SS   ++V   N L+A   R    L+ AR LFD M +    D  SW+ IV+A+A+ G 
Sbjct: 83  LLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRR---DHFSWSAIVSAHARHGQ 139

Query: 220 AEGGLMLFARM---TGDVKVQGD------------------GVSL---VNALSACASLGT 255
               L ++ RM    G   V  +                  G  L   V      A    
Sbjct: 140 PRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVV 199

Query: 256 WSR----GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           WS       +CG +++A+ VF+RM V+DVVSW AMV  Y       + F LF +M +  +
Sbjct: 200 WSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGI 259

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
                                              +PN  T   +L  CA   +  LGK+
Sbjct: 260 -----------------------------------QPNEFTYAGVLRACAEFTSEKLGKQ 284

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H    K   S  G   D     +AL+ MY+K   +  A  +F  + PK  D+ +WT MI
Sbjct: 285 VHGRMTK---SRAG---DSCFAESALVHMYSKYGDMGTAVRVFRGM-PK-LDLVSWTAMI 336

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QNG  ++AL  F  + +     +P+  T    L ACA    +  G  I  + ++++
Sbjct: 337 SGYAQNGQPDEALRYFDMLLRSG--CRPDHVTFVGVLSACAHAGLVDKGLSIF-HSIKDE 393

Query: 492 YEMLIPFVAN---CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKA 547
           Y   I   A+   C+ID+ SRSG  + A  + + +  + N   W SL+ G  +H     A
Sbjct: 394 YG--IEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLA 451

Query: 548 HWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQ 581
            WA + + +  + P+   T++ L    +  G+ D+
Sbjct: 452 RWAAEALFE--IEPENPATYVTLANIYASVGLFDE 484



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 24/271 (8%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W A++ R    R     FRLF++M+R G  P+E+T+  VL+AC E  S + G  VH 
Sbjct: 228 VVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHG 287

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +  S    + F  +AL+ MY++   +  A ++F  M  P + D+VSW  +++ YAQ+G 
Sbjct: 288 RMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGM--PKL-DLVSWTAMISGYAQNGQ 344

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F  M      + D V+ V  LSACA           G++++   +F  +K + 
Sbjct: 345 PDEALRYFD-MLLRSGCRPDHVTFVGVLSACA---------HAGLVDKGLSIFHSIKDEY 394

Query: 280 VVSWNA-----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            +   A     ++   SR G FE A  +   M   +VK N   W++++ G   R H +  
Sbjct: 395 GIEHTADHYACVIDLLSRSGLFERAEEMINTM---SVKPNKFLWASLLGGC--RIHKNVR 449

Query: 335 LDVFRQMQFCGLEP-NVVTLVSLLSGCASVG 364
           L  +       +EP N  T V+L +  ASVG
Sbjct: 450 LARWAAEALFEIEPENPATYVTLANIYASVG 480


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/712 (34%), Positives = 405/712 (56%), Gaps = 28/712 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y  ++  S A  L         +V W N+++              LF +M   G  
Sbjct: 186 LVSMYAKNDDLSAARRLFDGFQEKGDAVLW-NSILSSYSTSGKSLETLELFREMHMTGPA 244

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
           P+ YT    L AC     ++ G  +HA V+ SS   S ++VCNAL+AMY RC  +  A +
Sbjct: 245 PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAER 304

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +  +M      D+V+WN+++  Y Q+   +  L  F+ M      + D VS+ + ++A  
Sbjct: 305 ILRQMNNA---DVVTWNSLIKGYVQNLMYKEALEFFSDMIA-AGHKSDEVSMTSIIAASG 360

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            L     G     ME    V +     ++   N ++  YS+          F +M  +++
Sbjct: 361 RLSNLLAG-----MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDL 415

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               ++W+ VIAGYAQ     EAL++FR +    +E + + L S+L   + + ++L+ KE
Sbjct: 416 ----ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKE 471

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            HC+ +++ L        D ++ N L+D+Y KC+++  A  +F++I  K +DV +WT MI
Sbjct: 472 IHCHILRKGLL-------DTVIQNELVDVYGKCRNMGYATRVFESI--KGKDVVSWTSMI 522

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            S + NG  ++A+ LF +M +    +  ++  L C L A A L+AL  GR+IH Y+LR  
Sbjct: 523 SSSALNGNESEAVELFRRMVETG--LSADSVALLCILSAAASLSALNKGREIHCYLLRKG 580

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           +  L   +A  ++DMY+  GD+ +A+ VFD ++++ ++ +TS++  YGMHG G  A   F
Sbjct: 581 F-CLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 639

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           D+MR E ++PD ++FL LLYACSH+G++D+G  +   M  E+ +    EHY C+VD+LGR
Sbjct: 640 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 699

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           AN + EA E ++ M  EPT  +W ALL  CR H+  E+GE+AA RLLELE +  G+  L+
Sbjct: 700 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 759

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN++A  GRW DV ++R+ MK +G++K PGCSW++       F   D++HP+S++IYE L
Sbjct: 760 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 819

Query: 732 AGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           + + +++ + +GYV  T F LH+VD+ EK  +L  HSE++A+AYG    + G
Sbjct: 820 SEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGKERASKG 871



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 147/473 (31%), Positives = 243/473 (51%), Gaps = 27/473 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           + F WN +I   V    P +A  L+  M   G      +FP +LKAC +L   R GS +H
Sbjct: 109 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 168

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++   G+ S  F+ NAL++MYA+ D LS AR+LFD   + G  D V WN+I+++Y+ SG
Sbjct: 169 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG--DAVLWNSILSSYSTSG 226

Query: 219 DAEGGLMLFAR--MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            +   L LF    MTG      +  ++V+AL+AC        GK+      A  +     
Sbjct: 227 KSLETLELFREMHMTGPAP---NSYTIVSALTACDGFSYAKLGKEI----HASVLKSSTH 279

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             ++   NA++  Y+R G    A  + ++M       +VVTW+++I GY Q     EAL+
Sbjct: 280 SSELYVCNALIAMYTRCGKMPQAERILRQMNNA----DVVTWNSLIKGYVQNLMYKEALE 335

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F  M   G + + V++ S+++    +  LL G E H Y IK           +L V N 
Sbjct: 336 FFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH------GWDSNLQVGNT 389

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LIDMY+KC         F  +   ++D+ +WT +I  Y+QN    +AL LF  + +  K 
Sbjct: 390 LIDMYSKCNLTCYMGRAF--LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK--KR 445

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           ++ +   L   L A + L ++   ++IH ++LR    +L   + N L+D+Y +  ++  A
Sbjct: 446 MEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG--LLDTVIQNELVDVYGKCRNMGYA 503

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
             VF+++K ++VVSWTS+++   ++G   +A   F +M + GL+ D V  L +
Sbjct: 504 TRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCI 556



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 122/255 (47%), Gaps = 9/255 (3%)

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+ +I  Y   G    AL ++  M+  G+   + +  +LL  CA +  +  G E H   +
Sbjct: 113 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV 172

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K      G H     ++NAL+ MYAK   +  AR +FD    K  D   W  ++ SYS +
Sbjct: 173 KL-----GYHSTGF-IVNALVSMYAKNDDLSAARRLFDGFQEKG-DAVLWNSILSSYSTS 225

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G + + L LF +M        PN++T+  AL AC   +  + G++IHA VL++       
Sbjct: 226 GKSLETLELFREMHMTGP--APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 283

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           +V N LI MY+R G +  A  +   +   +VV+W SL+ GY  + +  +A   F  M   
Sbjct: 284 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 343

Query: 558 GLAPDGVTFLVLLYA 572
           G   D V+   ++ A
Sbjct: 344 GHKSDEVSMTSIIAA 358


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/699 (36%), Positives = 378/699 (54%), Gaps = 29/699 (4%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNV--FVCNALMAMYARCDTLSYARQLFDEMF 197
            +LK      S R G  VHA I  +  DS    F+ N L+ MY++ D    AR +     
Sbjct: 11  LLLKNAISTSSMRLGRVVHARIVKT-LDSPPPPFLANYLINMYSKLDHPESARLVL--RL 67

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
            P   ++VSW ++V+  AQ+G     L  F  M  +  V  +  +      A ASL    
Sbjct: 68  TPAR-NVVSWTSLVSGLAQNGHFSTALFEFFEMRRE-GVAPNDFTFPCVFKAVASLRLPV 125

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GKQ   +       +  ++ DV    +    Y +    +DA  LF ++ + N++    T
Sbjct: 126 TGKQIHAL-----AVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE----T 176

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+A I+     G   EA++ F + +  G +PN +T    L+ C+    L LG + H    
Sbjct: 177 WNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVF 236

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +     D S      V N LID Y KCK +  + ++F  +  KN    +W  ++ +Y QN
Sbjct: 237 RSGFDTDVS------VYNGLIDFYGKCKQIRSSEIIFAEMGMKN--AVSWCSLVAAYVQN 288

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
                A  L+  +  + ++V+ + F +S  L ACA +A L  GR IHA+ ++   E  I 
Sbjct: 289 HEDEKASVLY--LRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNI- 345

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM--R 555
           FV + L+DMY + G I+ +   FD + ++N+V+  SL+ GY   G  D A   F+ M  R
Sbjct: 346 FVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPR 405

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G AP+ +TF+ LL ACS +G V+ G+K FDSM   +GI   AEHY+CIVD+LGRA  +
Sbjct: 406 GCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMV 465

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           ++A E I+ MP++PT  +W AL N CR+H    LG LAA  L +L+ +  G++ LLSN +
Sbjct: 466 EQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTF 525

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A AGRW +   +R  MK  G+KK  G SW+  K     F   DR+H  +++I  +L  L 
Sbjct: 526 AAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLR 585

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
            +++A GY P    +L+D+++EEK   +  HSEKLALA+G++      PIRITKNLRICG
Sbjct: 586 NKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICG 645

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCHS   F+S  +  EII+RD+NRFH FK+G C+CK YW
Sbjct: 646 DCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/514 (26%), Positives = 235/514 (45%), Gaps = 42/514 (8%)

Query: 42  LLLRQCKSLTQVYL---IHQQIIVQNLTHVPP----SHLIAAYVSHNAPSPALSLLQRIS 94
           LLL+   S + + L   +H +I V+ L   PP    ++LI  Y   + P  A  L+ R++
Sbjct: 11  LLLKNAISTSSMRLGRVVHARI-VKTLDSPPPPFLANYLINMYSKLDHPESA-RLVLRLT 68

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P+  +V  W +L+    +      A   F +M R G  P+++TFP V KA   L     G
Sbjct: 69  PAR-NVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTG 127

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +HA+    G   +VFV  +   MY +      AR+LFDE+ +    ++ +WN  ++  
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER---NLETWNAYISNS 184

Query: 215 AQSG---DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
              G   +A    + F R+ G    Q + ++    L+AC+       G Q   +     V
Sbjct: 185 VTDGRPKEAIEAFIEFRRIGG----QPNSITFCGFLNACSDGLLLDLGMQMHGL-----V 235

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F      DV  +N ++  Y +      +  +F +M  +    N V+W +++A Y Q    
Sbjct: 236 FRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMK----NAVSWCSLVAAYVQNHED 291

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            +A  ++ + +   +E +   + S+LS CA +  L LG+  H + +K  +        ++
Sbjct: 292 EKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVE------RNI 345

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V +AL+DMY KC  ++ +   FD +  KN  + T   +IG Y+  G  + ALALF  M 
Sbjct: 346 FVGSALVDMYGKCGCIEDSEQAFDEMPEKN--LVTLNSLIGGYAHQGQVDMALALFEDMA 403

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSR 509
            +     PN  T    L AC+R  A+  G +I    +++ Y  + P     +C++DM  R
Sbjct: 404 PRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDS-MKSTYG-IEPGAEHYSCIVDMLGR 461

Query: 510 SGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHG 542
           +G ++ A      +  +  +S W +L     MHG
Sbjct: 462 AGMVEQAFEFIKKMPIKPTISVWGALQNACRMHG 495


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/528 (40%), Positives = 323/528 (61%), Gaps = 24/528 (4%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKET 372
           N+ TW+ +I G+A+  +   A+++F QM     + P+  T   L    A +  + LG+  
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 373 HCYTIKRVLSVDGSHPDDL-MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           H   ++          D L  V N+L+ MY+   S+  A  +F+ ++   RD   W  +I
Sbjct: 159 HSVVVRNGF-------DSLRFVQNSLVHMYSVLGSLXSAYQVFEIMS--YRDRVAWNSVI 209

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-- 489
             ++ NG  N+AL L+ +M  +   V+P+ FT+   L AC  L AL  G ++H Y+++  
Sbjct: 210 NGFALNGMPNEALTLYREMGSEG--VEPDGFTMVSLLSACVELGALALGERVHMYMVKVG 267

Query: 490 ---NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
              NQ+       +N L+D+YS+ G+   A+ VFD +++R+VVSWTSL+ G  ++GLG++
Sbjct: 268 LVQNQH------ASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNE 321

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F ++ ++GL P  +TF+ +LYACSH GM+D+G  YF  M +E+GI  R EH+ C+V
Sbjct: 322 ALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMV 381

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DLL RA ++ +A + I  MP+ P  +IW  LL  C IH ++ELGE+A   +  LE    G
Sbjct: 382 DLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSG 441

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
            + LLSN+YA+  RW DV  +R +M   GVKK PG S V+ K     F +GDR+HPQS++
Sbjct: 442 DFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEE 501

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
            Y +LA + Q +K  GYVP+T   L D+++EEK   L  H+EK+A+A+ ++ T PGTPIR
Sbjct: 502 TYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIR 561

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I KNLR+C DCH AI  IS +   EII+RD +RFHHFK+GSC+CK YW
Sbjct: 562 IMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 182/339 (53%), Gaps = 28/339 (8%)

Query: 41  SLLLRQCKSLTQVYLIHQ----QIIVQNLTH-VPPS------HLIAAYVSHNAP-SPALS 88
           S +LR+C SL Q+    Q    QI   ++ H VPP       HLI A VS +AP S A  
Sbjct: 31  SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQ 90

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM-MRRGWHPDEYTFPFVLKACGE 147
           +  +I     ++F WN +IR       P  A  LF QM       PD +TFPF+ KA  +
Sbjct: 91  IFNQIQAP--NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAK 148

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           L     G  +H+V+  +GFDS  FV N+L+ MY+   +L  A Q+F+ M      D V+W
Sbjct: 149 LMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIM---SYRDRVAW 205

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           N+++  +A +G     L L+  M G   V+ DG ++V+ LSAC  LG  + G++  M   
Sbjct: 206 NSVINGFALNGMPNEALTLYREM-GSEGVEPDGFTMVSLLSACVELGALALGERVHMY-- 262

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              + +   V++  + NA++  YS+ G+F DA  +F +M + +V    V+W+++I G A 
Sbjct: 263 ---MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSV----VSWTSLIVGLAV 315

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            G G+EAL +F +++  GL+P+ +T V +L  C+  G L
Sbjct: 316 NGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGML 354



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 27/236 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I       +P+ A  L+ +M   G  PD +T   +L AC EL +   G  VH  + 
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMV 264

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   N    NAL+ +Y++C     A+++FDEM +     +VSW +++   A +G    
Sbjct: 265 KVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEER---SVVSWTSLIVGLAVNGLGNE 321

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--- 276
            L LF    G+++ QG     ++ V  L AC+          CGM++E    F RMK   
Sbjct: 322 ALKLF----GELERQGLKPSEITFVGVLYACS---------HCGMLDEGFNYFRRMKEEY 368

Query: 277 --VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
             +  +     MV    R G   DA+   + M    V  N V W  ++      GH
Sbjct: 369 GILPRIEHHGCMVDLLCRAGKVGDAYDYIRNM---PVPPNAVIWRTLLGACTIHGH 421



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 51/280 (18%)

Query: 481 RQIHAYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           +QIHA+ +R+      P F  + +  + S S  +  A  +F+ ++  N+ +W +++ G+ 
Sbjct: 52  KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFA 111

Query: 540 MHGLGDKAHWAFDQMR-KEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKYF- 586
                  A   F QM     + PD  TF  L  A +           HS +V  G     
Sbjct: 112 ESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLR 171

Query: 587 ---DSMSKEFGISARAEHYACIVDLLGRANRL---------------DEAVELIEGM--- 625
              +S+   + +         + +++   +R+               +EA+ L   M   
Sbjct: 172 FVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSE 231

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG------SYTLLSNIYANAG 679
            +EP     V+LL+ C     VELG LA    + +   K G      +   L ++Y+  G
Sbjct: 232 GVEPDGFTMVSLLSAC-----VELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCG 286

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
            ++D  ++   M     ++R   SW     G A   +G+ 
Sbjct: 287 NFRDAQKVFDEM-----EERSVVSWTSLIVGLAVNGLGNE 321


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/550 (39%), Positives = 332/550 (60%), Gaps = 16/550 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N+++  Y + G+  DA  +F  M   ++     +W+++IAGYAQ     EAL +   M  
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDM----CSWTSLIAGYAQNDMPDEALGLLPGMLR 158

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
              +PN  T  SLL    +  +  +G++ H  T+K          DD+ V +AL+DMYA+
Sbjct: 159 GRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKY------DWHDDVYVGSALLDMYAR 212

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +D+A  +FD +  KN    +W  +I  +++ G     L +F +M  Q    +   FT
Sbjct: 213 CGRMDMAIAVFDQLESKNG--VSWNALIAGFARKGDGETTLLMFAEM--QRNGFEATHFT 268

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            S    A A + AL  G+ +HA+++++  E L  FV N ++DMY++SG +  AR VFD +
Sbjct: 269 YSSVFSAIAGIGALEQGKWVHAHMIKSG-ERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            +++VV+W S++T +  +GLG +A   F++MRK G+  + +TFL +L ACSH G+V +G 
Sbjct: 328 DKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGK 387

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YFD M KE+ +    +HY  +VDLLGRA  L++A+  I  MPM+PT  +W ALL  CR+
Sbjct: 388 QYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N ++G+ AA+ + EL+ +  G   LL NIYA+ G+W   AR+R +MK TGVKK P CS
Sbjct: 447 HKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACS 506

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           WV+ +     F   D THP+S++IY+    +  +I+  GYVP T + L  VD++E+   L
Sbjct: 507 WVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKL 566

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEK+ALA+ ++    G  IRI KN+RICGDCHSA  +IS +   EI++RD+NRFHHF
Sbjct: 567 QYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHF 626

Query: 824 KEGSCTCKGY 833
             GSC+C  Y
Sbjct: 627 SSGSCSCGDY 636



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 170/382 (44%), Gaps = 64/382 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +LI    +  +PD A  L   M+R  + P+ +TF  +LKA G   SS  G  +HA+  
Sbjct: 133 WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 192

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +  +V+V +AL+ MYARC  +  A  +FD++      + VSWN ++A +A+ GD E 
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK---NGVSWNALIAGFARKGDGET 249

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            L++FA M  +   +    +  +  SA A +G   +GK                      
Sbjct: 250 TLLMFAEMQRN-GFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               + G M +A+KVF+R+  KDVV+WN+M+T +++ G   +A   F++MR+  V LN +
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLLS--------------- 358
           T+ +++   +  G   E    F  M+   LEP +   VT+V LL                
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 359 ----GCASVGALLLGKETH------CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
                 A  GALL     H       +    V  +D   PDD      L ++YA     D
Sbjct: 429 PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELD---PDDTGPPVLLYNIYASTGQWD 485

Query: 409 VA---RVMFDAIAPKNRDVATW 427
            A   R M  A   K     +W
Sbjct: 486 AAARVRKMMKATGVKKEPACSW 507



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 195/457 (42%), Gaps = 77/457 (16%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           ++ AC    S     ++HA +  S F  +VF+ N+L+ +Y +C  ++ AR++FD M    
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQG-DGVSLVNALSACASLG---- 254
           +C   SW +++A YAQ+   +  L L   M  G  K  G    SL+ A  A AS G    
Sbjct: 130 MC---SWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 255 --------TWSRG-----------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                    W               +CG M+ A  VF++++ K+ VSWNA++ G++R G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            E    +F +M++                                    G E    T  S
Sbjct: 247 GETTLLMFAEMQRN-----------------------------------GFEATHFTYSS 271

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           + S  A +GAL  GK  H + IK    +         V N ++DMYAK  S+  AR +FD
Sbjct: 272 VFSAIAGIGALEQGKWVHAHMIKSGERLSA------FVGNTILDMYAKSGSMIDARKVFD 325

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  K  DV TW  M+ +++Q G   +A+  F +M +    V  N  T    L AC+   
Sbjct: 326 RVDKK--DVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG--VHLNQITFLSILTACSHGG 381

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFDNLKQRNVVSWTSL 534
            ++ G+Q    +     E  I      ++D+  R+G ++ A V +F    +     W +L
Sbjct: 382 LVKEGKQYFDMMKEYNLEPEIDHYVT-VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGAL 440

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           +    MH       +A D + +  L PD     VLLY
Sbjct: 441 LGSCRMHKNAKIGQFAADHVFE--LDPDDTGPPVLLY 475



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           + ACAR  +L   R IHA++  +Q+   + F+ N LI +Y + G +  AR VFD +  R+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSV-FLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           + SWTSL+ GY  + + D+A      M +    P+G TF  LL A   S     G +   
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG-EQIH 188

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +++ ++         + ++D+  R  R+D A+ + + +  +   + W AL+ G
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG 240


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/705 (34%), Positives = 392/705 (55%), Gaps = 67/705 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           V+ WN +I    R        R F L M+  G  PD  TFP VLKAC  +     G+ +H
Sbjct: 50  VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIH 106

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +    GF  +V+V  +L+ +Y+R   +  AR LFDEM    + D+ SWN +++ Y QSG
Sbjct: 107 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM---PVRDMGSWNAMISGYCQSG 163

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-----------QCGMMEE 267
           +A+  L L   +        D V++V+ LSAC   G ++RG            +  ++ +
Sbjct: 164 NAKEALTLSNGLRA-----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLRD 218

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
            +KVF+RM V+D++SWN                                   ++I  Y  
Sbjct: 219 CQKVFDRMYVRDLISWN-----------------------------------SIIKAYEL 243

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                 A+ +F++M+   ++P+ +TL+SL S  + +G +   +    +T+++     G  
Sbjct: 244 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK-----GWF 298

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
            +D+ + NA++ MYAK   VD AR +F+ +   N DV +W  +I  Y+QNG A++A+ ++
Sbjct: 299 LEDITIGNAVVVMYAKLGLVDSARAVFNWLP--NTDVISWNTIISGYAQNGFASEAIEMY 356

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
             + +++  +  N  T    L AC++  ALR G ++H  +L+N   + + FV   L DMY
Sbjct: 357 -NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV-FVVTSLADMY 414

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
            + G ++ A  +F  + + N V W +L+  +G HG G+KA   F +M  EG+ PD +TF+
Sbjct: 415 GKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 474

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            LL ACSHSG+VD+G   F+ M  ++GI+   +HY C+VD+ GRA +L+ A++ I+ M +
Sbjct: 475 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 534

Query: 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
           +P   IW ALL+ CR+H NV+LG++A+  L E+E E  G + LLSN+YA+AG+W+ V  I
Sbjct: 535 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 594

Query: 688 RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
           RS+    G++K PG S ++       F+ G++THP  +++Y  L  L  ++K +GYVP  
Sbjct: 595 RSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDH 654

Query: 748 SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            F L DV+D+EK  +L  HSE+LA+A+ ++ T   T IRI KNLR
Sbjct: 655 RFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 699



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 170/412 (41%), Gaps = 80/412 (19%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQ-MQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           +V  W+ +I+GY + G+  E +  F   M   GL P+  T  S+L  C +V   + G + 
Sbjct: 49  DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---IDGNKI 105

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           HC  +K     D      + V  +LI +Y++ K+V  AR++FD +    RD+ +W  MI 
Sbjct: 106 HCLALKFGFMWD------VYVAASLIHLYSRYKAVGNARILFDEMPV--RDMGSWNAMIS 157

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y Q+G A +AL L       + L   ++ T+   L AC        G  IH+Y +++  
Sbjct: 158 GYCQSGNAKEALTL------SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 211

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E     + +C              + VFD +  R+++SW S++  Y ++    +A   F 
Sbjct: 212 ES--ELLRDC--------------QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQ 255

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVD-----QGLKYFDS--------------MSKEF 593
           +MR   + PD +T + L    S  G +      QG                    M  + 
Sbjct: 256 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL 315

Query: 594 GI--SARAE----------HYACIVDLLGRANRLDEAVELIEGMPME----PTPIIWVAL 637
           G+  SARA            +  I+    +     EA+E+   M  E         WV++
Sbjct: 316 GLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSV 375

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSY------TLLSNIYANAGRWKD 683
           L  C     +  G     RLL     K+G Y      T L+++Y   GR +D
Sbjct: 376 LPACSQAGALRQGMKLHGRLL-----KNGLYLDVFVVTSLADMYGKCGRLED 422



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD I  +NRDV  W +MI  Y + G +++ +  F  +F     + P+  T    L AC  
Sbjct: 42  FDHI--QNRDVYAWNLMISGYGRAGNSSEVIRCF-SLFMLSSGLTPDYRTFPSVLKACRT 98

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +     G +IH   L+  + M   +VA  LI +YSR   +  AR++FD +  R++ SW +
Sbjct: 99  VID---GNKIHCLALKFGF-MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNA 154

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           +++GY   G   +A    + +R    A D VT + LL AC+ +G  ++G+
Sbjct: 155 MISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGV 200


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/699 (36%), Positives = 379/699 (54%), Gaps = 29/699 (4%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNV--FVCNALMAMYARCDTLSYARQLFDEMF 197
            +LK      S R G  VHA I  +  DS    F+ N L+ MY++ D    AR +     
Sbjct: 11  LLLKNAISASSMRLGRVVHARIVKT-LDSPPPPFLANYLINMYSKLDHPESARLVL--RL 67

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
            P   ++VSW ++++  AQ+G     L+ F  M  +  V  D  +   A  A ASL    
Sbjct: 68  TPAR-NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPND-FTFPCAFKAVASLRLPV 125

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GKQ   +       +  ++ DV    +    Y +    +DA  LF ++ + N++    T
Sbjct: 126 TGKQIHAL-----AVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE----T 176

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+A I+     G   EA++ F + +     PN +T  + L+ C+    L LG + H   +
Sbjct: 177 WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVL 236

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +     D S      V N LID Y KCK +  + ++F  +  KN    +W  ++ +Y QN
Sbjct: 237 RSGFDTDVS------VCNGLIDFYGKCKQIRSSEIIFTEMGTKN--AVSWCSLVAAYVQN 288

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
                A  L+  +  +  +V+ + F +S  L ACA +A L  GR IHA+ ++   E  I 
Sbjct: 289 HEDEKASVLY--LRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI- 345

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM--R 555
           FV + L+DMY + G I+ +   FD + ++N+V+  SL+ GY   G  D A   F++M  R
Sbjct: 346 FVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPR 405

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G  P+ +TF+ LL ACS +G V+ G+K FDSM   +GI   AEHY+CIVD+LGRA  +
Sbjct: 406 GCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMV 465

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           + A E I+ MP++PT  +W AL N CR+H   +LG LAA  L +L+ +  G++ LLSN +
Sbjct: 466 ERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTF 525

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A AGRW +   +R  +K  G+KK  G SW+  K     F   DR+H  +++I   LA L 
Sbjct: 526 AAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLR 585

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
             ++A GY P    +L+D+++EEK   +  HSEKLALA+G+L+     PIRITKNLRICG
Sbjct: 586 NEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICG 645

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCHS   F+S  +  EII+RD+NRFH FK+G C+CK YW
Sbjct: 646 DCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 232/514 (45%), Gaps = 42/514 (8%)

Query: 42  LLLRQCKSLTQVYL---IHQQIIVQNLTHVPP----SHLIAAYVSHNAPSPALSLLQRIS 94
           LLL+   S + + L   +H +I V+ L   PP    ++LI  Y   + P  A  L+ R++
Sbjct: 11  LLLKNAISASSMRLGRVVHARI-VKTLDSPPPPFLANYLINMYSKLDHPESA-RLVLRLT 68

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P+  +V  W +LI    +      A   F +M R G  P+++TFP   KA   L     G
Sbjct: 69  PAR-NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTG 127

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +HA+    G   +VFV  +   MY +      AR+LFDE+ +    ++ +WN  ++  
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER---NLETWNAFISNS 184

Query: 215 AQSG---DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
              G   +A    + F R+ G      + ++    L+AC+     + G Q   +     V
Sbjct: 185 VTDGRPREAIEAFIEFRRIDG----HPNSITFCAFLNACSDWLHLNLGMQLHGL-----V 235

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
                  DV   N ++  Y +      +  +F +M  +    N V+W +++A Y Q    
Sbjct: 236 LRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK----NAVSWCSLVAAYVQNHED 291

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            +A  ++ + +   +E +   + S+LS CA +  L LG+  H + +K  +         +
Sbjct: 292 EKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVE------RTI 345

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V +AL+DMY KC  ++ +   FD +  KN  + T   +IG Y+  G  + ALALF +M 
Sbjct: 346 FVGSALVDMYGKCGCIEDSEQAFDEMPEKN--LVTRNSLIGGYAHQGQVDMALALFEEMA 403

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSR 509
            +     PN  T    L AC+R  A+  G +I    +R+ Y  + P     +C++DM  R
Sbjct: 404 PRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDS-MRSTYG-IEPGAEHYSCIVDMLGR 461

Query: 510 SGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHG 542
           +G ++ A      +  +  +S W +L     MHG
Sbjct: 462 AGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 495



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 169/375 (45%), Gaps = 21/375 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA I  +V    P  A   F++  R   HP+  TF   L AC +      G  +H ++ 
Sbjct: 177 WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVL 236

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGFD++V VCN L+  Y +C  +  +  +F EM   G  + VSW ++VAAY Q+ + E 
Sbjct: 237 RSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEM---GTKNAVSWCSLVAAYVQNHEDEK 293

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +L+ R   D+ V+     + + LSACA +     G+        K   ER     +  
Sbjct: 294 ASVLYLRSRKDI-VETSDFMISSVLSACAGMAGLELGRSI-HAHAVKACVERT----IFV 347

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM- 341
            +A+V  Y + G  ED+   F +M ++    N+VT +++I GYA +G    AL +F +M 
Sbjct: 348 GSALVDMYGKCGCIEDSEQAFDEMPEK----NLVTRNSLIGGYAHQGQVDMALALFEEMA 403

Query: 342 -QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
            + CG  PN +T VSLLS C+  GA+    E        + S  G  P      + ++DM
Sbjct: 404 PRGCGPTPNYMTFVSLLSACSRAGAV----ENGMKIFDSMRSTYGIEPGAEHY-SCIVDM 458

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
             +   V+ A      + P    ++ W  +  +   +G     L     +F+ D     N
Sbjct: 459 LGRAGMVERAYEFIKKM-PIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGN 517

Query: 461 AFTLSCALMACARLA 475
              LS    A  R A
Sbjct: 518 HVLLSNTFAAAGRWA 532


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 331/603 (54%), Gaps = 71/603 (11%)

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           +R  SFE +  +F  +R+ NV L    W+ +I    +     +A+ ++ +M      PN 
Sbjct: 82  NRYLSFESSLRVFDFVRKPNVFL----WNCMIKVCIENNEPFKAILLYYEMMVAHFRPNK 137

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIK---------------------------RVLSV 383
            T  ++L  C+  G +  G + H + +K                           R+L  
Sbjct: 138 YTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 197

Query: 384 DGSH-----------------------------PDDLMVI--NALIDMYAKCKSVDVARV 412
            G                               PD  M+   NA+I  +++C  V+VAR 
Sbjct: 198 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 257

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            FD +  K RD  +W+ MI  Y Q G   +AL +F QM  Q + ++P  F L   L ACA
Sbjct: 258 FFDEM--KERDEISWSAMIDGYIQEGCFMEALEIFHQM--QKEKIRPRKFVLPSVLSACA 313

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L AL  GR IH Y  RN  + L   +   L+DMY++ G ID A  VF+ +  + V SW 
Sbjct: 314 NLGALDQGRWIHTYAKRNSIQ-LDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWN 372

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +++ G  MHG   +A  A D   K  + P+ +TF+ +L AC+H G+V +GL  F+SM KE
Sbjct: 373 AMIGGLAMHG---RAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKE 429

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
           +G+  + EHY CIVDLLGRA  L EA +++  +P EPTP +W ALL  CR H NVELGE 
Sbjct: 430 YGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGER 489

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKEGT 711
               LLELE +  G YTLLSNIYA AGRW++V  +R LMK  G+K  PG S +  G+   
Sbjct: 490 VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEV 549

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F +GD +HPQ + IY++L  + +R++  GY P  S  L D+D+EEK   +++HSEKLA
Sbjct: 550 HKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLA 609

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           + +G++ T+PGT IRI KNLR+C DCHSA   IS + N EII+RD  R+HHF+ G+C+CK
Sbjct: 610 IGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCK 669

Query: 832 GYW 834
            +W
Sbjct: 670 DFW 672



 Score =  196 bits (498), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 254/548 (46%), Gaps = 81/548 (14%)

Query: 13  SKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSH 72
           ++ P   +HL  N      +      I  LL  QC +    +L     ++    H+  S+
Sbjct: 9   TEAPYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLH-HLKQAHALILRTGHLQDSY 67

Query: 73  LIAAYVSHNA---PSPALSLLQRISPSPF----SVFWWNALIRRAVRLRLPDNAFRLFLQ 125
           +  + V   A    +  LS    +    F    +VF WN +I+  +    P  A  L+ +
Sbjct: 68  IAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYE 127

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           MM   + P++YT+P VLKAC +      G  VHA +   G   +  + ++ + MYA    
Sbjct: 128 MMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGR 187

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L  AR++ D+  + G  D V WN ++  Y + G+                          
Sbjct: 188 LVEARRILDD--KGGEVDAVCWNAMIDGYLRFGE-------------------------- 219

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-WNAMVTGYSRIGSFEDAFALFK 304
                              +E A+++FE M  + ++S WNAM++G+SR G  E A   F 
Sbjct: 220 -------------------VEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFD 260

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M++ +     ++WSA+I GY Q G   EAL++F QMQ   + P    L S+LS CA++G
Sbjct: 261 EMKERDE----ISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLG 316

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           AL  G+  H Y  +  + +DG      ++  +L+DMYAKC  +D+A  +F+ ++  N++V
Sbjct: 317 ALDQGRWIHTYAKRNSIQLDG------VLGTSLVDMYAKCGRIDLAWEVFEKMS--NKEV 368

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
           ++W  MIG  + +G A DA+ LF +M      + PN  T    L ACA    ++ G  I 
Sbjct: 369 SSWNAMIGGLAMHGRAEDAIDLFSKMD-----INPNEITFVGVLNACAHGGLVQKGLTIF 423

Query: 485 AYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
              +R +Y +  P + +  C++D+  R+G +  A  V  ++      + W +L+     H
Sbjct: 424 N-SMRKEYGVE-PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 481

Query: 542 G---LGDK 546
           G   LG++
Sbjct: 482 GNVELGER 489



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 148/361 (40%), Gaps = 64/361 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   ++      A  +F QM +    P ++  P VL AC  L +   G  +H    
Sbjct: 270 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 329

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +    +  +  +L+ MYA+C  +  A ++F++M      ++ SWN ++   A  G AE 
Sbjct: 330 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK---EVSSWNAMIGGLAMHGRAED 386

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG----------------------- 259
            + LF++M     +  + ++ V  L+ACA  G   +G                       
Sbjct: 387 AIDLFSKM----DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 442

Query: 260 ----KQCGMMEEAKKVFERMKVKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                + G++ EA+KV   +  +   + W A++    + G+ E    + K + +   + N
Sbjct: 443 VDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ-N 501

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
              ++ +   YA+ G   E  +V + M+  G++    T +  L G   V   ++G     
Sbjct: 502 SGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDL-GRGEVHKFIIG----- 555

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCK--------SVDVARVMFDAIAPKNRDVAT 426
                    DGSHP     +  +  M  K K          D ++V+FD I  + ++ A 
Sbjct: 556 ---------DGSHPQ----VKDIYQMLDKVKERLQMEGYEPDPSQVLFD-IDEEEKETAV 601

Query: 427 W 427
           W
Sbjct: 602 W 602


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/704 (35%), Positives = 382/704 (54%), Gaps = 101/704 (14%)

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           ++ F+ N L+ +YA+   +S+AR+LFDEM Q    D  SWN +++ YA+SG  E   ++F
Sbjct: 56  NDTFIHNRLLNLYAKSGEISHARKLFDEMTQR---DNFSWNAMLSLYAKSGLVEDLRVIF 112

Query: 228 ARMTGD-------------------------VKVQGDGV-----SLVNALSACASLGTWS 257
             M                            +++Q +G+     + V+ L+AC  L    
Sbjct: 113 DNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLR 172

Query: 258 RGKQCGMMEEAKKVFERMKV----KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
           RGKQ         +  R+ +     +V   NA+   Y+R G  + A  LF +M    V  
Sbjct: 173 RGKQ---------IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRM----VIR 219

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           NVVTW+ +I+GY +     + +D+F +MQ   L+P+ VT  S+L                
Sbjct: 220 NVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGA-------------- 265

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
                                      Y +   +D AR +F  I  + +D   WT+MI  
Sbjct: 266 ---------------------------YIQAGYIDEARKVFGEI--REKDEVCWTIMIVG 296

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH--AYVLRNQ 491
            +QNG   DAL LF +M  ++   +P+ +T+S  + +CA+LA+L  G+ +H  A+++   
Sbjct: 297 CAQNGKEEDALLLFSEMLLEN--ARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVN 354

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            ++L   V++ L+DMY + G    A  +F  ++ RNVVSW S++ GY ++G   +A   +
Sbjct: 355 DDLL---VSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLY 411

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           + M +E L PD VTF+ +L AC H+G+V++G +YF SMS + G+    +HYAC+V+L GR
Sbjct: 412 ENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGR 471

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           +  +D+AV+LI  M  EP  +IW  +L+ C +  +++ GE+AA  L+EL       Y +L
Sbjct: 472 SGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIML 531

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+YA  GRWKDVA IRSLMK   VKK    SW++       F   DRTHP ++ I+  L
Sbjct: 532 SNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQL 591

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG-TPIRITKN 790
             L+++++  G+ P T+  LHD  ++EK + +  HSEKLALAYG++    G TPIRI KN
Sbjct: 592 NRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKN 651

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +R C DCH  + F+S I    +ILRDSNRFHHF EG C+CK YW
Sbjct: 652 IRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 206/425 (48%), Gaps = 59/425 (13%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A  +FL+M + G  P EYT   VL AC +L   R G  +H  I       NVFVCNAL  
Sbjct: 139 ALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTD 198

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           +YARC  +  AR+LFD M    I ++V+WN +++ Y ++   E  + LF  M     ++ 
Sbjct: 199 LYARCGEIDQARRLFDRMV---IRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVS-NLKP 254

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D V      +A + LG +    Q G ++EA+KVF  ++ KD V W  M+ G ++ G  ED
Sbjct: 255 DQV------TASSVLGAYI---QAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEED 305

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF +M  EN +                                   P+  T+ S++S
Sbjct: 306 ALLLFSEMLLENAR-----------------------------------PDGYTISSVVS 330

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA + +L  G+  H      ++ V+    DDL+V +AL+DMY KC     A  +F  + 
Sbjct: 331 SCAKLASLYHGQVVHGKAF--LMGVN----DDLLVSSALVDMYCKCGVTRDAWTIFSTM- 383

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            + R+V +W  MIG Y+ NG   +AL+L+  M +++  +KP++ T    L AC     + 
Sbjct: 384 -QTRNVVSWNSMIGGYALNGQDLEALSLYENMLEEN--LKPDSVTFVGVLSACVHAGLVE 440

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTG 537
            G++    +         P    C+++++ RSG +D A  +  ++ Q  N + WT++++ 
Sbjct: 441 EGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSV 500

Query: 538 YGMHG 542
             M G
Sbjct: 501 CVMKG 505



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 153/370 (41%), Gaps = 48/370 (12%)

Query: 58  QQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRL 115
            ++ V NL    V  S ++ AY+       A  +   I         W  +I    +   
Sbjct: 245 HEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREK--DEVCWTIMIVGCAQNGK 302

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
            ++A  LF +M+     PD YT   V+ +C +L S   G  VH      G + ++ V +A
Sbjct: 303 EEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSA 362

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+ MY +C     A  +F  M      ++VSWN+++  YA +G     L L+  M  +  
Sbjct: 363 LVDMYCKCGVTRDAWTIFSTMQTR---NVVSWNSMIGGYALNGQDLEALSLYENMLEE-N 418

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGY 290
           ++ D V+ V  LSAC            G++EE K+ F  M  +  +      +  MV  +
Sbjct: 419 LKPDSVTFVGVLSACV---------HAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLF 469

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG---HGHEA------LDVFRQM 341
            R G  + A  L   M QE    N + W+ V++    +G   HG  A      L+ F  +
Sbjct: 470 GRSGHMDKAVDLISSMSQEP---NSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAV 526

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT----------IKRVLSVDGSHPDDL 391
            +  L  N+          AS+ +L+  K    ++          + + ++ D +HPD  
Sbjct: 527 PYIMLS-NMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAK 585

Query: 392 MV---INALI 398
           ++   +N LI
Sbjct: 586 IIHVQLNRLI 595



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 93/205 (45%), Gaps = 37/205 (18%)

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA------------ 516
           + C R + +   +++ +++  + ++    F+ N L+++Y++SG+I  A            
Sbjct: 30  LECFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDN 89

Query: 517 -------------------RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
                              RV+FDN+  R+ VS+ ++++G+  +G G  A   F +M+KE
Sbjct: 90  FSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKE 149

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRL 615
           GL P   T + +L AC+    + +G +    +      +     + C  + DL  R   +
Sbjct: 150 GLKPTEYTHVSVLNACTQLLDLRRGKQIHGRI---IICNLGGNVFVCNALTDLYARCGEI 206

Query: 616 DEAVELIEGMPMEPTPIIWVALLNG 640
           D+A  L + M +    + W  +++G
Sbjct: 207 DQARRLFDRMVIRNV-VTWNLMISG 230


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/706 (35%), Positives = 374/706 (52%), Gaps = 80/706 (11%)

Query: 143 KACGELPSSRCGSSVH------AVICSSGFDSNVFVCNALMAMYARCDTLSY-----ARQ 191
           KA   L +++C +S+H      A+I  +G   + ++  +L+  YA   T  Y     + +
Sbjct: 34  KAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLR 93

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD + +P   ++  WN ++    ++ +    ++L+  M      + +  +    L AC+
Sbjct: 94  VFDFVRKP---NVFLWNCMIKVCIENNEPFKAILLYYEMV-VAHSRPNKYTYPAVLKACS 149

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
             G  + G Q         + +     D    ++ +  Y+  G   +A  +      E  
Sbjct: 150 DSGVVAEGVQV-----HAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE-- 202

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            ++ V W+A+I GY + G    A ++F  M                              
Sbjct: 203 -VDAVCWNAMIDGYLRFGEVEAARELFEGM------------------------------ 231

Query: 372 THCYTIKRVLSVDGSHPDDLMVI--NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
                           PD  M+   NA+I  +++C  V+VAR  FD +  K RD  +W+ 
Sbjct: 232 ----------------PDRSMISTWNAMISGFSRCGMVEVAREFFDEM--KERDEISWSA 273

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI  Y Q G   +AL +F QM  Q + ++P  F L   L ACA L AL  GR IH Y  R
Sbjct: 274 MIDGYIQEGCFMEALEIFHQM--QKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
           N  + L   +   L+DMY++ G ID A  VF+ +  + V SW +++ G  MHG   +A  
Sbjct: 332 NSIQ-LDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHG---RAED 387

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
           A D   K  + P+ +TF+ +L AC+H G+V +GL  F+SM KE+G+  + EHY CIVDLL
Sbjct: 388 AIDLFSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLL 447

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
           GRA  L EA +++  +P EPTP +W ALL  CR H NVELGE     LLELE +  G YT
Sbjct: 448 GRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYT 507

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKEGTATFFVGDRTHPQSQKIY 728
           LLSNIYA AGRW++V  +R LMK  G+K  PG S +  G+     F +GD +HPQ + IY
Sbjct: 508 LLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIY 567

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           ++L  + +R++  GY P  S  L D+D+EEK   +++HSEKLA+ +G++ T+PGT IRI 
Sbjct: 568 QMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIV 627

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCHSA   IS + N EII+RD  R+HHF+ G+C+CK +W
Sbjct: 628 KNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 220/454 (48%), Gaps = 71/454 (15%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +VF WN +I+  +    P  A  L+ +M+     P++YT+P VLKAC +      G  VH
Sbjct: 102 NVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVH 161

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +   G   +  + ++ + MYA    L  AR++ D+  + G  D V WN ++  Y + G
Sbjct: 162 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD--KGGEVDAVCWNAMIDGYLRFG 219

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           + E    LF  M           S+++  +A  S   +SR   CGM+E A++ F+ MK +
Sbjct: 220 EVEAARELFEGMPDR--------SMISTWNAMIS--GFSR---CGMVEVAREFFDEMKER 266

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D +SW+AM+ GY + G F +A  +F +M++E ++                          
Sbjct: 267 DEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR-------------------------- 300

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
                    P    L S+LS CA++GAL  G+  H Y  +  + +DG      ++  +L+
Sbjct: 301 ---------PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDG------VLGTSLV 345

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMYAKC  +D+A  +F+ ++  N++V++W  MIG  + +G A DA+ LF +M      + 
Sbjct: 346 DMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD-----IY 398

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
           PN  T    L ACA    ++ G  I    +R +Y +  P + +  C++D+  R+G +  A
Sbjct: 399 PNEITFVGVLNACAHGGLVQKGLTIFN-SMRKEYGVE-PQIEHYGCIVDLLGRAGLLTEA 456

Query: 517 RVVFDNLKQRNVVS-WTSLMTGYGMHG---LGDK 546
             V  ++      + W +L+     HG   LG++
Sbjct: 457 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGER 490



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 148/361 (40%), Gaps = 64/361 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   ++      A  +F QM +    P ++  P VL AC  L +   G  +H    
Sbjct: 271 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 330

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +    +  +  +L+ MYA+C  +  A ++F++M      ++ SWN ++   A  G AE 
Sbjct: 331 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK---EVSSWNAMIGGLAMHGRAED 387

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG----------------------- 259
            + LF++M     +  + ++ V  L+ACA  G   +G                       
Sbjct: 388 AIDLFSKM----DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 443

Query: 260 ----KQCGMMEEAKKVFERMKVKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                + G++ EA+KV   +  +   + W A++    + G+ E    + K + +   + N
Sbjct: 444 VDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ-N 502

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
              ++ +   YA+ G   E  +V + M+  G++    T +  L G   V   ++G     
Sbjct: 503 SGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDL-GRGEVHKFIIG----- 556

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCK--------SVDVARVMFDAIAPKNRDVAT 426
                    DGSHP     +  +  M  K K          D ++V+FD I  + ++ A 
Sbjct: 557 ---------DGSHPQ----VKDIYQMLDKVKERLQMEGYEPDPSQVLFD-IDEEEKETAV 602

Query: 427 W 427
           W
Sbjct: 603 W 603


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/512 (41%), Positives = 315/512 (61%), Gaps = 9/512 (1%)

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           +GY +       + ++ +M    + PN  T   L+  C    A+  GK+ H + +K    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
            DG        +N LI MY   +S++ AR +FD +  ++R+  +W  MI +Y Q+   ++
Sbjct: 127 ADG------FSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHE 180

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A ALF +M  ++ ++  + F  +  L AC  L AL  G+ IH Y+ ++  E L   +A  
Sbjct: 181 AFALFDRMRLENVVL--DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSKLATT 237

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           +IDMY + G ++ A  VF+ L Q+ + SW  ++ G  MHG G+ A   F +M +E +APD
Sbjct: 238 VIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPD 297

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
           G+TF+ +L AC+HSG+V++G  YF  M++  G+    EH+ C+VDLLGRA  L+EA +LI
Sbjct: 298 GITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLI 357

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MP+ P   +  AL+  CRIH N ELGE    +++ELE    G Y LL+N+YA+AGRW+
Sbjct: 358 NEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWE 417

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DVA++R LM   GVKK PG S ++ + G   F  G R HPQ+++IY  L  +++ I+++G
Sbjct: 418 DVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIG 477

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP T   LHD+D+EEK + L+ HSEKLA+A+G+L T PG  +RI+KNLRIC DCH A  
Sbjct: 478 YVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASK 537

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS + + EII+RD NRFHHF+ G C+CK YW
Sbjct: 538 LISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 29/267 (10%)

Query: 111 VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170
           +R +L  N   ++ +M+ +   P+++T+P +++AC    +   G  +HA +   GF ++ 
Sbjct: 70  LRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADG 129

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F  N L+ MY    +L  AR++FD M Q    + VSWN ++AAY QS        LF RM
Sbjct: 130 FSLNNLIHMYVNFQSLEQARRVFDNMPQRDR-NSVSWNAMIAAYVQSNRLHEAFALFDRM 188

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGM 264
             +  V  D     + LSAC  LG   +GK                          +CG 
Sbjct: 189 RLE-NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +E+A +VF  +  K + SWN M+ G +  G  E A  LFK+M +E V  + +T+  V++ 
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307

Query: 325 YAQRGHGHEALDVFRQM-QFCGLEPNV 350
            A  G   E    F+ M +  GL+P +
Sbjct: 308 CAHSGLVEEGKHYFQYMTEVLGLKPGM 334



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 16/247 (6%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D  S N ++  Y    S E A  +F  M Q +   N V+W+A+IA Y Q    HEA  +F
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD--RNSVSWNAMIAAYVQSNRLHEAFALF 185

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+   +  +     S+LS C  +GAL  GK  H Y  K  + +D        +   +I
Sbjct: 186 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSK------LATTVI 239

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY KC  ++ A  +F+ +  K   +++W  MIG  + +G    A+ LF +M  + ++V 
Sbjct: 240 DMYCKCGCLEKASEVFNELPQKG--ISSWNCMIGGLAMHGKGEAAIELFKEM--EREMVA 295

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
           P+  T    L ACA    +  G+    Y+   +   L P + +  C++D+  R+G ++ A
Sbjct: 296 PDGITFVNVLSACAHSGLVEEGKHYFQYM--TEVLGLKPGMEHFGCMVDLLGRAGLLEEA 353

Query: 517 RVVFDNL 523
           R + + +
Sbjct: 354 RKLINEM 360



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 18/241 (7%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           ++LI  YV+  +   A  +   +     +   WNA+I   V+      AF LF +M    
Sbjct: 133 NNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLEN 192

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              D++    +L AC  L +   G  +H  I  SG + +  +   ++ MY +C  L  A 
Sbjct: 193 VVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKAS 252

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++F+E+ Q GI    SWN ++   A  G  E  + LF  M  ++ V  DG++ VN LSAC
Sbjct: 253 EVFNELPQKGIS---SWNCMIGGLAMHGKGEAAIELFKEMEREM-VAPDGITFVNVLSAC 308

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A           G++EE K  F+ M         +  +  MV    R G  E+A  L  +
Sbjct: 309 A---------HSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE 359

Query: 306 M 306
           M
Sbjct: 360 M 360


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 275/806 (34%), Positives = 419/806 (51%), Gaps = 44/806 (5%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPPS-----HLIAAYVSHNAPSP--ALSLLQRISPS 96
           LR C SL Q   +H  I      H  PS      L+AAY    A     A  LL  + P 
Sbjct: 20  LRSCASLPQAAAVHGHIA---RAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEM-PR 75

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGS 155
             +V  +N LI    R    + +   FL   R      D +T+   L AC      + G 
Sbjct: 76  RNAV-SFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGK 134

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VHA+    G    VFV N+L++MYARC  +  AR++FD   +    D VSWN++V+ Y 
Sbjct: 135 VVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEER---DDVSWNSLVSGYL 191

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           + G  E  L +FA M     +  +  +L + +  C+       G   G+ E       + 
Sbjct: 192 RVGAHEEMLRVFALMR-RCAMGLNSFALGSVIKCCSG----GDGSVRGIAEAVHGCVVKA 246

Query: 276 KVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG--- 331
            +  D+   +AMV  Y++ G+  +A ALFK +    +  NVV ++A+IAG  +       
Sbjct: 247 GLDTDLFLASAMVDMYAKRGALSEAVALFKSV----LDPNVVVFNAMIAGLCRDEAAVHK 302

Query: 332 ---HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
               EAL ++ ++Q  G+EP   T  S++  C   G +  GK+ H   +K     D    
Sbjct: 303 EVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDD--- 359

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
               + +ALID+Y     ++     F ++ PK +DV TWT MI    QN     ALALF 
Sbjct: 360 ---FIGSALIDLYFNSACMEDGFRCFRSV-PK-QDVVTWTAMISGCVQNELFERALALFH 414

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           ++      +KP+ FT+S  + ACA LA +R G Q+  +  ++ ++       +C I MY+
Sbjct: 415 ELLGVG--LKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSC-IHMYA 471

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           RSG+++ A   F  ++  +VVSW+++++ +  HG   +A   F++M    + P+ +TFL 
Sbjct: 472 RSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLG 531

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           +L ACSH G+VD+GL+Y++ M  E+G+    +H  C+VDLLGRA RL +A   I      
Sbjct: 532 VLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFH 591

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
             P++W +LL  CRIH ++E G+L A+R++EL+    G Y  L N+Y +AG     ++IR
Sbjct: 592 DEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGELSLGSKIR 651

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
            LMK  GVKK PG SW++ + G  +F  GD++HP+   IY  LA ++ +I  +     + 
Sbjct: 652 DLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSKIDKLTTTDTSC 711

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
               +    E+ + +  HSEKLA+A GI+      PIR+ KNLR+C DCHS +  IS   
Sbjct: 712 IEWVETTGREQ-NWMNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSE 770

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
             EIILRD  RFHHF++GSC+C  YW
Sbjct: 771 CREIILRDVIRFHHFRDGSCSCGDYW 796


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/451 (47%), Positives = 289/451 (64%), Gaps = 13/451 (2%)

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           D+   NAL+  Y K   +D A  +F+ +  +N  + +WT MI  YSQ+G A  AL+LF +
Sbjct: 199 DVSSWNALLAGYTKSGCIDAALAIFERMPWRN--IVSWTTMISGYSQSGLAQQALSLFDE 256

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR----NQYEMLIPFVANCLID 505
           M ++D  V+PN  T+   L ACA+L+ L  GRQIH    R    +   +LI   A     
Sbjct: 257 MVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA----- 311

Query: 506 MYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           MY++ G +  AR  FD L   ++N+++W +++T Y  +G G +A   F +M + G+ PD 
Sbjct: 312 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 371

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +TF  LL  CSHSG+VD GLKYF+ MS  + I+ R EHYAC+ DLLGRA RL EA +L+ 
Sbjct: 372 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 431

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            MPM   P IW +LL  CR H N+E+ E AA +L  LE E  G+Y LLSN+YA AGRW++
Sbjct: 432 EMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQE 491

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           V ++R+++K  G KK PGCSW++       F  GD +HPQ ++IY  L  L +++KA GY
Sbjct: 492 VDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGY 551

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
            P TS+ LHD+ +EEK   L  HSEKLA+A+GIL T   T +R+TKNLRICGDCH+A+ F
Sbjct: 552 FPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVF 611

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS I   E+I+RD NRFHHFK G C+C  YW
Sbjct: 612 ISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 188/400 (47%), Gaps = 44/400 (11%)

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
           + G  VHA +   G      V + ++A YA    +  +  +F+     GI D  ++  ++
Sbjct: 87  KLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFN-----GIGDYFTFPFVL 141

Query: 212 AAYAQ-----SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
            +  +      G    GL+L   +  D+ V    + L                 +CG + 
Sbjct: 142 KSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYG---------------KCGEIN 186

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           +A KVF+ M ++DV SWNA++ GY++ G  + A A+F++M       N+V+W+ +I+GY+
Sbjct: 187 DAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR----NIVSWTTMISGYS 242

Query: 327 QRGHGHEALDVFRQM--QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
           Q G   +AL +F +M  +  G+ PN VT++S+L  CA +  L  G++ H    +  L+ +
Sbjct: 243 QSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSN 302

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            S      V+ AL  MYAKC S+  AR  FD +    +++  W  MI +Y+  G    A+
Sbjct: 303 AS------VLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAV 356

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--C 502
           + F +M Q    ++P+  T +  L  C+    +  G +   + +   Y  + P V +  C
Sbjct: 357 STFREMIQAG--IQPDDITFTGLLSGCSHSGLVDVGLKYFNH-MSTTYS-INPRVEHYAC 412

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           + D+  R+G +  A  +   +      S W SL+     H
Sbjct: 413 VADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKH 452



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 137/265 (51%), Gaps = 36/265 (13%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D +TFPFVLK+  EL S   G  VH +I   G   +++V  +L+ +Y +C  ++ A ++F
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192

Query: 194 DEM---------------FQPGICD-------------IVSWNTIVAAYAQSGDAEGGLM 225
           D M                + G  D             IVSW T+++ Y+QSG A+  L 
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252

Query: 226 LFARMTG-DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN 284
           LF  M   D  V+ + V++++ L ACA L T  RG+Q  + E A ++        +++  
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ--IHELACRMGLNSNASVLIALT 310

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           AM   Y++ GS  DA   F K+ +   + N++ W+ +I  YA  GHG +A+  FR+M   
Sbjct: 311 AM---YAKCGSLVDARNCFDKLNRN--EKNLIAWNTMITAYASYGHGLQAVSTFREMIQA 365

Query: 345 GLEPNVVTLVSLLSGCASVGALLLG 369
           G++P+ +T   LLSGC+  G + +G
Sbjct: 366 GIQPDDITFTGLLSGCSHSGLVDVG 390



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-- 129
           L+A Y        AL++ +R+   P+ ++  W  +I    +  L   A  LF +M++   
Sbjct: 206 LLAGYTKSGCIDAALAIFERM---PWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDS 262

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  P+  T   VL AC +L +   G  +H + C  G +SN  V  AL AMYA+C +L  A
Sbjct: 263 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDA 322

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R  FD++ +    ++++WNT++ AYA  G     +  F  M     +Q D ++    LS 
Sbjct: 323 RNCFDKLNR-NEKNLIAWNTMITAYASYGHGLQAVSTFREMI-QAGIQPDDITFTGLLSG 380

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYS-------RIGSFEDAFAL 302
           C+           G+++   K F  M      S N  V  Y+       R G   +A  L
Sbjct: 381 CS---------HSGLVDVGLKYFNHMST--TYSINPRVEHYACVADLLGRAGRLAEASKL 429

Query: 303 FKKM 306
             +M
Sbjct: 430 VGEM 433



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 67/182 (36%)

Query: 474 LAALRFGRQIHA--------------------------------------------YVLR 489
           L  L+ G Q+HA                                            +VL+
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGDYFTFPFVLK 142

Query: 490 NQYEMLIPFVANC-------------------LIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           +  E+L  ++  C                   LI +Y + G+I+ A  VFDN+  R+V S
Sbjct: 143 SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS 202

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +L+ GY   G  D A   F++M    +    V++  ++   S SG+  Q L  FD M 
Sbjct: 203 WNALLAGYTKSGCIDAALAIFERMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEMV 258

Query: 591 KE 592
           KE
Sbjct: 259 KE 260


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/699 (35%), Positives = 377/699 (53%), Gaps = 91/699 (13%)

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           ++ F+ N L+ +YA+   L  A+ LFD+M +    DI SWN +++AYA+SG  +     F
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKR---DIFSWNALLSAYAKSGSIQNLKATF 112

Query: 228 ARM---------------TGDV----------KVQGDGV-----SLVNALSACASLGTWS 257
            RM               +G+           ++Q +G      ++V+ L+A A L    
Sbjct: 113 DRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLR 172

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GKQ         +  R  + +V  WNA+   Y++ G  E A  LF  +     K N+V+
Sbjct: 173 YGKQI-----HGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCL----TKKNLVS 223

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+ +I+GYA+ G   + + +  QM+  G                                
Sbjct: 224 WNLMISGYAKNGQPEKCIGLLHQMRLSG-------------------------------- 251

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
                    H  D + ++ +I  Y +C  VD AR +F     K +D+  WT M+  Y++N
Sbjct: 252 ---------HMPDQVTMSTIIAAYCQCGRVDEARRVFSEF--KEKDIVCWTAMMVGYAKN 300

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY-VLRNQYEMLI 496
           G   DAL LF +M  +   ++P+++TLS  + +CA+LA+L  G+ +H   +L      L+
Sbjct: 301 GREEDALLLFNEMLLEH--IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLL 358

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             V++ LIDMYS+ G ID AR VF+ +  RNVVSW +++ G   +G    A   F+ M +
Sbjct: 359 --VSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
           +   PD VTF+ +L AC H   ++QG +YFDS++ + G++   +HYAC+V+LLGR  R++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           +AV LI+ M  +P  +IW  LL+ C    ++   E+AA  L EL+      Y +LSN+YA
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYA 536

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
           + GRWKDVA +R+LMK   VKK  G SW++       F   DRTHP+S+ IYE L  L+ 
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIG 596

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG-TPIRITKNLRICG 795
           +++  G+ P T+  LHDV ++EK   +  HSEKLALA+G++    G +PIRI KN+RIC 
Sbjct: 597 KLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICN 656

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH  + F S II  +IILRDSNRFHHF  G C+C   W
Sbjct: 657 DCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 213/426 (50%), Gaps = 67/426 (15%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P  +  LF +M R G+ P EYT   +L A  +L   R G  +H  I    F  NVF+ NA
Sbjct: 136 PQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNA 195

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG--GLMLFARMTGD 233
           L  MYA+C  +  AR LFD + +    ++VSWN +++ YA++G  E   GL+   R++G 
Sbjct: 196 LTDMYAKCGEIEQARWLFDCLTKK---NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGH 252

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           +    D V++   ++A           QCG ++EA++VF   K KD+V W AM+ GY++ 
Sbjct: 253 MP---DQVTMSTIIAAYC---------QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKN 300

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  EDA  LF +M  E++                                   EP+  TL
Sbjct: 301 GREEDALLLFNEMLLEHI-----------------------------------EPDSYTL 325

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S++S CA + +L  G+  H  +I   L+      ++L+V +ALIDMY+KC  +D AR +
Sbjct: 326 SSVVSSCAKLASLHHGQAVHGKSILAGLN------NNLLVSSALIDMYSKCGFIDDARSV 379

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +  +N  V +W  MI   +QNG   DAL LF  M QQ    KP+  T    L AC  
Sbjct: 380 FNLMPTRN--VVSWNAMIVGCAQNGHDKDALELFENMLQQK--FKPDNVTFIGILSACLH 435

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVS 530
              +  G++    +  NQ+ M  P + +  C++++  R+G I+ A  +  N+    + + 
Sbjct: 436 CNWIEQGQEYFDSIT-NQHGM-TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLI 493

Query: 531 WTSLMT 536
           W++L++
Sbjct: 494 WSTLLS 499



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 32/235 (13%)

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            P D  + N L+ +YAK   +  A+ +FD +    RD+ +W  ++ +Y+++G   +  A 
Sbjct: 54  QPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLK--RDIFSWNALLSAYAKSGSIQNLKAT 111

Query: 447 FPQMFQQDKL-----------------------------VKPNAFTLSCALMACARLAAL 477
           F +M  +D +                              +P  +T+   L A A+L+ L
Sbjct: 112 FDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDL 171

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           R+G+QIH  ++   +   + F+ N L DMY++ G+I+ AR +FD L ++N+VSW  +++G
Sbjct: 172 RYGKQIHGSIIVRNFLGNV-FIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISG 230

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           Y  +G  +K      QMR  G  PD VT   ++ A    G VD+  + F    ++
Sbjct: 231 YAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK 285



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 55  LIHQQIIVQNL-THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           L+HQ  +  ++   V  S +IAAY        A  +          +  W A++    + 
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK--DIVCWTAMMVGYAKN 300

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
              ++A  LF +M+     PD YT   V+ +C +L S   G +VH     +G ++N+ V 
Sbjct: 301 GREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS 360

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           +AL+ MY++C  +  AR +F+ M      ++VSWN ++   AQ+G  +  L LF  M   
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLM---PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVT 288
            K + D V+ +  LSAC           C  +E+ ++ F+ +  +  ++     +  MV 
Sbjct: 418 -KFKPDNVTFIGILSACL---------HCNWIEQGQEYFDSITNQHGMTPTLDHYACMVN 467

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
              R G  E A AL K M  +    + + WS +++  + +G    A    R +    L+P
Sbjct: 468 LLGRTGRIEQAVALIKNMAHDP---DFLIWSTLLSICSTKGDIVNAEVAARHL--FELDP 522

Query: 349 NVVTLVSLLSG----------CASVGALLLGKETHCYT----------IKRVLSVDGSHP 388
            +     +LS            ASV  L+  K    +           + R  S D +HP
Sbjct: 523 TIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHP 582

Query: 389 D 389
           +
Sbjct: 583 E 583



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 65/248 (26%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +   P+    L  QM   G  PD+ T                         
Sbjct: 224 WNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM------------------------ 259

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                      + ++A Y +C  +  AR++F E  +    DIV W  ++  YA++G  E 
Sbjct: 260 -----------STIIAAYCQCGRVDEARRVFSEFKEK---DIVCWTAMMVGYAKNGREED 305

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            L+LF  M  +  ++ D  +L + +S+CA L +   G+                      
Sbjct: 306 ALLLFNEMLLE-HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +CG +++A+ VF  M  ++VVSWNAM+ G ++ G  +DA  LF+ M Q+  K + V
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424

Query: 317 TWSAVIAG 324
           T+  +++ 
Sbjct: 425 TFIGILSA 432



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           ++ C R   +   +++ +++  + ++    F+ N L+ +Y++ G +  A+ +FD + +R+
Sbjct: 29  VLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRD 88

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           + SW +L++ Y   G        FD+M       D V++   +   S +    + L+ F 
Sbjct: 89  IFSWNALLSAYAKSGSIQNLKATFDRMPFR----DSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 588 SMSKE 592
            M +E
Sbjct: 145 RMQRE 149


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/629 (38%), Positives = 354/629 (56%), Gaps = 23/629 (3%)

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           +NT++            + L+A M     +  D  +    L ACA L  +  G     + 
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMH-KAAIVPDSFTFSFVLKACARLNLFHLGVMIHSL- 129

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
               VF+     DV     +V  YS+ G   DA+ +F  M    V  NVV+W+ +I G  
Sbjct: 130 ----VFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDM----VVKNVVSWTGMICGCI 181

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           + G   EA+D+FR +   GL P+   +V +L  CA +G L  G+      I R +   G 
Sbjct: 182 EFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR-----WIDRCMRECGL 236

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
              ++ V  +L+DMY KC S++ AR +FD +  K  D+  W+ MI  Y+ NG   +A+ L
Sbjct: 237 -SRNVFVATSLVDMYTKCGSMEEARFVFDGMVEK--DIVCWSAMIQGYASNGLPREAIEL 293

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVANCLID 505
           F +M + +  V+P+ + +  AL +CA L AL  G    A  L N  E L  P +   LID
Sbjct: 294 FFEMRKVN--VRPDCYAMVGALSSCASLGALELGNW--AKGLMNYEEFLSNPVLGTSLID 349

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
            Y++ G ++ A  V+  +K+++ V + ++++G  M+G    A   F QM K G+ P+  T
Sbjct: 350 FYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHT 409

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F+ LL  C+H+G+VD G  YF+SMS +F ++   EHY C+VDLL RA  LDEA  LI+GM
Sbjct: 410 FVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGM 469

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           PM+   I+W +LL GCR+H   +L E    +L+ELE    G Y LLSNIY+ + RW +  
Sbjct: 470 PMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAE 529

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           +IRS +   G++K PG SWV+       F VGD +HP SQKIYE L  L + +K  GY P
Sbjct: 530 KIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNP 589

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            T F L DV++EEK   L  HSEKLA+A+ +++T     IR+ KNLR+CGDCH AI  IS
Sbjct: 590 TTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHIS 649

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +   EI++RD+NRFH F +G+C+C+ YW
Sbjct: 650 KVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 241/531 (45%), Gaps = 94/531 (17%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYV------SHNAPSPALSLLQRISPSPFSVF 101
           K L    L H +++  NL H   + L++  +      S+NA  P L   +  +P+  + F
Sbjct: 15  KCLKHAKLAHCRLLRLNLHH--DNDLLSIILRSTINFSNNAQYPILVFHK--TPTNSNTF 70

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            +N +IR  V     +NA  L+  M +    PD +TF FVLKAC  L     G  +H+++
Sbjct: 71  LYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLV 130

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +GFD +VFV   ++  Y++C  L  A ++FD+M    + ++VSW  ++    + G   
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMV---VKNVVSWTGMICGCIEFGKFR 187

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------- 260
             + LF R   +  ++ DG  +V  L ACA LG    G+                     
Sbjct: 188 EAVDLF-RGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSL 246

Query: 261 -----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                +CG MEEA+ VF+ M  KD+V W+AM+ GY+  G   +A  LF +MR+ NV+   
Sbjct: 247 VDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVR--- 303

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
                                           P+   +V  LS CAS+GAL LG      
Sbjct: 304 --------------------------------PDCYAMVGALSSCASLGALELGNWA--- 328

Query: 376 TIKRVLSVDG--SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             K +++ +   S+P   ++  +LID YAKC S++ A  ++  +  K+R V  +  +I  
Sbjct: 329 --KGLMNYEEFLSNP---VLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVV--FNAVISG 381

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
            +  G    A  +F QM +    + PN  T    L  C     +  GR  H +   +   
Sbjct: 382 LAMYGQVGAAFGVFGQMGKFG--IPPNEHTFVGLLCGCTHAGLVDDGR--HYFNSMSHDF 437

Query: 494 MLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMH 541
            + P + +  C++D+ +R+G +D A  +   +  + NV+ W SL+ G  +H
Sbjct: 438 SVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLH 488



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 23/251 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I+      LP  A  LF +M +    PD Y     L +C  L +   G+    ++ 
Sbjct: 274 WSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMN 333

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              F SN  +  +L+  YA+C ++  A  ++  M +    D V +N +++  A  G    
Sbjct: 334 YEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEK---DRVVFNAVISGLAMYGQVGA 390

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
              +F +M G   +  +  + V  L  C            G++++ +  F  M       
Sbjct: 391 AFGVFGQM-GKFGIPPNEHTFVGLLCGCT---------HAGLVDDGRHYFNSMSHDFSVT 440

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +  +  MV   +R G  ++A  L K M    +K NV+ W +++ G         A  V
Sbjct: 441 PTIEHYGCMVDLLARAGFLDEAHNLIKGM---PMKANVIVWGSLLGGCRLHRETQLAEHV 497

Query: 338 FRQMQFCGLEP 348
            +Q+    LEP
Sbjct: 498 LKQL--IELEP 506


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 350/575 (60%), Gaps = 49/575 (8%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CGMM +A+++F+ M  K+++SWN ++ G    G + +AF LF  M Q+           
Sbjct: 178 KCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQD----------- 226

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
               ++  G                        V+++   A +G +  G++ H  ++K  
Sbjct: 227 ----FSDAGSR--------------------MFVTMIRASAGLGLIFAGRQLHSCSLK-- 260

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             V G    D+ V  ALIDMY+KC S++ A+ +FD +  K      W  +I  Y+ +G +
Sbjct: 261 TGVGG----DVFVACALIDMYSKCGSIEDAQCVFDQMPEKT--TVGWNSIIAGYALHGYS 314

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL+++ +M  +D  VK + FT S  +  CARLA+L   +Q HA ++R+ + + I  VA
Sbjct: 315 EEALSMYYEM--RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDI--VA 370

Query: 501 N-CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           N  L+D+YS+ G I+ A+ VFD +  +NV+SW +L+ GYG HG G +A   F++M  EG+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ VTFL +L ACS+SG+ D+G + F+SMS++  I  RA HYAC+++LLGR   LDEA 
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LI+  P +PT  +W ALL  CR+H N ELG+ AA +L  +  EK  +Y +L NIY  +G
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSG 550

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           R ++ A +   +K  G++  P CSW++ K+    F  GD+ H QS++IY+ L  L+  I 
Sbjct: 551 RLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEIS 610

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVPQ  F L DVD++E+  LL+ HSEKLA+A+G++ T+  TP++I ++ RICGDCHS
Sbjct: 611 KHGYVPQDKFLLPDVDEQEERVLLY-HSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHS 669

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI  I+++   EI++RD++RFHHFK+GSC+C  YW
Sbjct: 670 AIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 224/514 (43%), Gaps = 80/514 (15%)

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           I + V  +    A  LF  +   G +  D  T+  ++ AC  L S R    V   + +SG
Sbjct: 102 IEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSG 161

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            D + ++ N ++ M+ +C  +  AR+LFDEM +    +I+SWNTI+     +GD      
Sbjct: 162 LDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEK---NILSWNTIIGGLVDAGDYFEAFR 218

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------------ 261
           LF  M  D    G  +  V  + A A LG    G+Q                        
Sbjct: 219 LFLMMWQDFSDAGSRM-FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMY 277

Query: 262 --CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             CG +E+A+ VF++M  K  V WN+++ GY+  G  E+A +++ +MR   VK++  T+S
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFS 337

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
            +I                                     CA + +L   K+ H   ++ 
Sbjct: 338 III-----------------------------------RICARLASLEHAKQAHAGLVRH 362

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
              +      D++   AL+D+Y+K   ++ A+ +FD +  KN  V +W  +I  Y  +G 
Sbjct: 363 GFGL------DIVANTALVDLYSKWGRIEDAKHVFDMMPHKN--VISWNALIAGYGNHGR 414

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +A+ +F +M  +  +  PN  T    L AC+       G +I   + R+         
Sbjct: 415 GVEAVEMFERMLHEGMV--PNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMH 472

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
             C+I++  R G +D A  +  +   +  V+ W +L+T   +H   +   +A +++   G
Sbjct: 473 YACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLY--G 530

Query: 559 LAPDGVT-FLVLLYACSHSGMVDQGLKYFDSMSK 591
           + P+ ++ ++VLL   + SG +++      ++ +
Sbjct: 531 MGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKR 564



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 30/269 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN +I   V       AFRLFL M +         F  +++A   L     G  +H
Sbjct: 196 NILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLH 255

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +    +G   +VFV  AL+ MY++C ++  A+ +FD+M +      V WN+I+A YA  G
Sbjct: 256 SCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEK---TTVGWNSIIAGYALHG 312

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC---------------- 262
            +E  L ++  M  D  V+ D  +    +  CA L +    KQ                 
Sbjct: 313 YSEEALSMYYEMR-DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVAN 371

Query: 263 ----------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                     G +E+AK VF+ M  K+V+SWNA++ GY   G   +A  +F++M  E + 
Sbjct: 372 TALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            N VT+ AV++  +  G      ++F  M
Sbjct: 432 PNHVTFLAVLSACSYSGLSDRGWEIFESM 460



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 103/210 (49%), Gaps = 8/210 (3%)

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP--F 498
           ++AL LF ++ + +     ++ T    + AC  L ++R  +++  Y++ +    L P  +
Sbjct: 112 HEALELF-EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSG---LDPDEY 167

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N ++ M+ + G +  AR +FD + ++N++SW +++ G    G   +A   F  M ++ 
Sbjct: 168 LRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDF 227

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
                  F+ ++ A +  G++  G +   S S + G+         ++D+  +   +++A
Sbjct: 228 SDAGSRMFVTMIRASAGLGLIFAG-RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDA 286

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVE 648
             + + MP E T + W +++ G  +H   E
Sbjct: 287 QCVFDQMP-EKTTVGWNSIIAGYALHGYSE 315


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 394/711 (55%), Gaps = 45/711 (6%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGF--DSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +  +L+ C  L + +    +H+ + + GF   +  F+   L+ +Y++   L  AR LFD 
Sbjct: 28  YDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLAR-LIILYSKLGDLHSARTLFDH 83

Query: 196 MFQPGICDIVS-----WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN----- 245
                     +      NT++ AYA +G +   + L+  M      Q  GV + N     
Sbjct: 84  RHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM------QRMGVGVNNFTYPF 137

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            L  CAS      G   G +   + V       D+    A+V  Y++ G   DA  +F +
Sbjct: 138 VLKVCAS----ELGAVFGEVVHGQVVRTGFG-SDLFVEAALVDMYAKCGEIGDAHEVFDR 192

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M    +  +VV W+A+I  Y Q     +AL +FR+MQ  G   + +T +S+ S    +G 
Sbjct: 193 M----LIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD 248

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
             +    H Y      +V      D+ V N+++ MYAKC +V+ AR++FD +  + R+  
Sbjct: 249 GRMAISVHGY------AVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRM--EERNGI 300

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  M+  Y+QNG   DAL+LF QM  Q     PN  T    + AC+ L +   GR++H 
Sbjct: 301 SWNSMLSGYTQNGRPTDALSLFNQM--QASECDPNPVTALIMVSACSYLGSKHLGRKLHN 358

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN--LKQRNVVSWTSLMTGYGMHGL 543
           +V+ ++ ++    + N ++DMY + GD+DTA  +F+N  L +R+V SW  L++GYG+HG 
Sbjct: 359 FVISSKMDIDTT-LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGH 417

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G +A   F +M+ EG+ P+ +TF  +L ACSH+G++D+G K F  M+K   +    +HYA
Sbjct: 418 GKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYA 476

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C+VD+LGRA  L+EA  LI+ +P  P+  +W ALL  CRIH N ELGE+AAN L +LE E
Sbjct: 477 CMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPE 536

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
             G Y L+SNIYA + +WK+V  +R  MK  G+KK    S ++       F   D++ P 
Sbjct: 537 HTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPY 596

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGT 783
            +++Y  +  L   +K +GYVP  S  LHDV+ E+K  LL  HSEKLA+A+GI+    G 
Sbjct: 597 YREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGM 656

Query: 784 PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           PI++TKNLR+C DCH A  FIS I   +II+RD NRFHHF+ G C+C  YW
Sbjct: 657 PIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 168/610 (27%), Positives = 272/610 (44%), Gaps = 99/610 (16%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQN-LTHVPP--SHLIAAYVSHNAPSPALSLLQRI------ 93
           LL+ C SLT + LIH  +  +  L H P   + LI  Y        A +L          
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHG 90

Query: 94  -SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
            + +P S F  N ++R          A  L++ M R G   + +T+PFVLK C     + 
Sbjct: 91  HTQAPNS-FLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G  VH  +  +GF S++FV  AL+ MYA+C  +  A ++FD M    I D+V W  ++ 
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRML---IRDVVCWTAMIT 206

Query: 213 AYAQSGDAEGGLMLFARMT-----------------------GDVKVQGDGVSLVNALSA 249
            Y Q+      LMLF +M                        G + +   G +++N    
Sbjct: 207 LYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIG 266

Query: 250 CASLGTWSRG--KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
             S+G    G   +CG +E A+ VF+RM+ ++ +SWN+M++GY++ G   DA +LF    
Sbjct: 267 DVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN--- 323

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
                                           QMQ    +PN VT + ++S C+ +G+  
Sbjct: 324 --------------------------------QMQASECDPNPVTALIMVSACSYLGSKH 351

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG++ H + I   + +D +      + NA++DMY KC  +D A  MF+      RDV++W
Sbjct: 352 LGRKLHNFVISSKMDIDTT------LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSW 405

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
            V+I  Y  +G   +AL LF +M  Q + V+PN  T +  L AC+    +  GR+  A +
Sbjct: 406 NVLISGYGVHGHGKEALELFSRM--QVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM 463

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDK 546
            +      +   A C++DM  R+G ++ A  +   +  R +   W +L+    +HG  + 
Sbjct: 464 TKLSVRPEMKHYA-CMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTEL 522

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL---YACSH---------SGMVDQGLKYFDSMSK-EF 593
              A + + +  L P+   + VL+   YA S+           M  +GLK   + S  EF
Sbjct: 523 GEIAANNLFQ--LEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEF 580

Query: 594 GISARAEHYA 603
           G      H A
Sbjct: 581 GTEVHGFHTA 590


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 359/601 (59%), Gaps = 31/601 (5%)

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D  +   ALSACA LG    G+         + F+     DV   ++++  Y+R G+  D
Sbjct: 107 DSTTFTLALSACARLGDLRGGESV-----RDRAFDAGYKDDVFVCSSLLHLYARWGAMGD 161

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  +F +M + +     VTWS ++AG+   G   +A+ ++R+M+  G++ + V ++ ++ 
Sbjct: 162 AVKVFDRMPRRDR----VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQ 217

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C +   + +G   H + ++  + +D      ++   +L+DMYAK   +DVA  +F  + 
Sbjct: 218 ACTAARNVRMGASVHGHLLRHGMRMD------VVTATSLVDMYAKNGLLDVACRVFGLMV 271

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            +N DV +W+ MI  ++QNG +++AL LF  M  Q   ++P++  L  AL+AC+ +  L+
Sbjct: 272 HRN-DV-SWSAMISGFAQNGQSDEALRLFRNM--QASGIQPDSGALVSALLACSNIGFLK 327

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCL-----IDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
            GR +H +++R        F  NC+     IDMYS+ G + +A+++F+ +  R+++ W +
Sbjct: 328 LGRSVHGFIVRR-------FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++   G HG G  A   F +M + G+ PD  TF  LL A SHSG+V++G  +F  M   F
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHF 440

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            I+   +HY C+VDLL R+  ++EA +L+  M  EPT  IWVALL+GC  +  +ELGE  
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A+ +LEL+ +  G   L+SN+YA   +W  V ++R LMK +G KK PGCS ++ +     
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHA 560

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F + D++HPQ ++I   +A L   ++ MGY+P+T F  HD+++E K   L  HSEKLA+A
Sbjct: 561 FLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIA 620

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+L T PGT + I KNLR+CGDCH AI +IS I + EI++RD+ RFHHFK+G C+C+ Y
Sbjct: 621 FGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDY 680

Query: 834 W 834
           W
Sbjct: 681 W 681



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 245/481 (50%), Gaps = 31/481 (6%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNA 119
           I+  + TH   S L AAY      + A S L   + S     W   +   + R   P +A
Sbjct: 35  IVSSSATHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGS-PASA 93

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
            R+F + +     PD  TF   L AC  L   R G SV      +G+  +VFVC++L+ +
Sbjct: 94  LRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHL 152

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           YAR   +  A ++FD M +    D V+W+T+VA +  +G     + ++ RM  D  V+GD
Sbjct: 153 YARWGAMGDAVKVFDRMPRR---DRVTWSTMVAGFVSAGQPLDAIQMYRRMRED-GVKGD 208

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
            V ++  + AC    T +R  + G       +   M++ DVV+  ++V  Y++ G  + A
Sbjct: 209 EVVMIGVIQAC----TAARNVRMGASVHGHLLRHGMRM-DVVTATSLVDMYAKNGLLDVA 263

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +F  M    V  N V+WSA+I+G+AQ G   EAL +FR MQ  G++P+   LVS L  
Sbjct: 264 CRVFGLM----VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLA 319

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           C+++G L LG+  H + ++R          + ++  A IDMY+KC S+  A+++F+ I+ 
Sbjct: 320 CSNIGFLKLGRSVHGFIVRRF-------DFNCILGTAAIDMYSKCGSLASAQMLFNMIS- 371

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
            +RD+  W  MI     +G   DAL LF +M +    ++P+  T +  L A +    +  
Sbjct: 372 -DRDLILWNAMIACCGAHGRGQDALTLFQEMNETG--MRPDHATFASLLSALSHSGLVEE 428

Query: 480 GRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMT 536
           G+     ++ N ++ + P   +  CL+D+ +RSG ++ A  +  ++K    V+ W +L++
Sbjct: 429 GKLWFGCMV-NHFK-ITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486

Query: 537 G 537
           G
Sbjct: 487 G 487


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/695 (33%), Positives = 386/695 (55%), Gaps = 29/695 (4%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           V+++C  L +   G  +H +I   G  S+V+V N L+ MY +C +L  AR +F+    P 
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEAT--PA 97

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++ SW  ++   AQ G ++  L LF  M     +Q   VS   A++AC++   +    
Sbjct: 98  K-NVFSWTILITVCAQHGRSQEALALFYEMLKQ-GIQPHSVSFTAAINACSAGPEFLPAG 155

Query: 261 QCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
           +         +  R   +D VV+  ++V+ YS+ GS E++   F+ M     +LN V+W+
Sbjct: 156 RA-----LHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESM----TELNAVSWN 206

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           A+IA +A+   G EAL   ++M   G+    VT ++L+S       L   +  H   ++ 
Sbjct: 207 AMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRT 266

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
               D        V+N +++MY KC  +  A  MF +++    DV  W  MI +YSQ+G 
Sbjct: 267 GFDQD--------VVNVILNMYGKCGCLQDAEAMFKSMSQP--DVIAWNTMIAAYSQHGH 316

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
            ++AL  +  M  Q++ V P+ +T    + ACA L  +  G+Q+H  +    ++  +  +
Sbjct: 317 TSEALRFYELM--QEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQ--VTEL 372

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           AN L++MY + G +D AR +FD    +  V+W +++  Y  H    +A   F  MR +G 
Sbjct: 373 ANSLVNMYGKCGILDVARSIFDKTA-KGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGE 431

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P  +TF+ +L AC+++G+ ++   YF  M ++ G+     HY C+V+ LG+A RL +A 
Sbjct: 432 EPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAE 491

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LI+GMP EP  + W + L  CR H +++ G+ AA   + ++ E    Y  L+ I+A+AG
Sbjct: 492 ALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARIHADAG 551

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
            +++ +RIR LM   G++K  G S ++       F  GD+++P+S++I++ L  L + +K
Sbjct: 552 DFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMK 611

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GY P  +   HDV+  +K  LLF HSE+LA+A+GI++T+ GTP+RI KNLR+CGDCH+
Sbjct: 612 RAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTPLRIMKNLRVCGDCHA 671

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                S I   EII+RDSNRFHHFK GSC+CK +W
Sbjct: 672 MTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 176/364 (48%), Gaps = 27/364 (7%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           S +++   Q G    A+D  ++ +    + ++   V ++  CA +GAL  G+  H   I+
Sbjct: 7   STLLSKRQQLGQIAAAIDALQKRK----DADLKECVRVIQSCARLGALAEGRRIH-QLIR 61

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
           RV         D+ V N L+ MY KC S++ AR++F+A   KN  V +WT++I   +Q+G
Sbjct: 62  RV-----GLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN--VFSWTILITVCAQHG 114

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMAC-ARLAALRFGRQIHAYVLRNQYEMLIP 497
            + +ALALF +M +Q   ++P++ + + A+ AC A    L  GR +HA + R  ++  + 
Sbjct: 115 RSQEALALFYEMLKQG--IQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAV- 171

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
                L+ MYS+ G ++ +   F+++ + N VSW +++  +  H  G +A     +M  E
Sbjct: 172 VATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLE 231

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+    VT++ L+ A      + +  +Y        G      +   I+++ G+   L +
Sbjct: 232 GIRACSVTYITLMSAYDQPSQL-KSARYIHDCILRTGFDQDVVN--VILNMYGKCGCLQD 288

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNI 674
           A  + + M  +P  I W  ++     H +       A R  EL  E+      YT +S I
Sbjct: 289 AEAMFKSMS-QPDVIAWNTMIAAYSQHGHTS----EALRFYELMQEEGVVPDDYTYVSVI 343

Query: 675 YANA 678
            A A
Sbjct: 344 DACA 347



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 105/243 (43%), Gaps = 25/243 (10%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           S S   V  WN +I    +      A R +  M   G  PD+YT+  V+ AC  L     
Sbjct: 295 SMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEV 354

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VH  +    F       N+L+ MY +C  L  AR +FD+  +      V+WN ++ A
Sbjct: 355 GKQVHRRLGDRAFQVTELA-NSLVNMYGKCGILDVARSIFDKTAKGS----VTWNAMIGA 409

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           YAQ    +    LF  M  D + +   ++ ++ LSACA+          G+ EEA   F 
Sbjct: 410 YAQHSHEQQAFELFLLMRLDGE-EPSYITFMSVLSACAN---------AGLPEEAHSYFV 459

Query: 274 RMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
            M+    V      +  MV    + G   DA AL + M  E    +V+TW++ +A    R
Sbjct: 460 CMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEP---DVLTWTSFLANC--R 514

Query: 329 GHG 331
            HG
Sbjct: 515 SHG 517


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/543 (40%), Positives = 329/543 (60%), Gaps = 26/543 (4%)

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLL 357
           A  +F K+ +    +NV  W+ +I GYA+ G+   A+ ++R+M+  G +EP+  T   LL
Sbjct: 72  AHKVFSKIEK---PINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
                +  + LG+  H   I+   S  GS    + V N+L+ +YA C  V  A  +FD +
Sbjct: 129 KAVGKMADVRLGETIHSVVIR---SGFGSL---IYVQNSLLHLYANCGDVASAYKVFDKM 182

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  D+  W  +I  +++NG   +ALAL+ +M    K +KP+ FT+   L ACA++ AL
Sbjct: 183 PEK--DLVAWNSVINGFAENGKPEEALALYTEM--DLKGIKPDGFTIVSLLSACAKIGAL 238

Query: 478 RFGRQIHAYVL-----RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
             G++ H Y++     RN +       +N L+D+Y+R G ++ A+ +FD +  +N VSWT
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHS------SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 533 SLMTGYGMHGLGDKAHWAFDQMR-KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           SL+ G  ++GLG +A   F  M  KEGL P  +TF+ +LYACSH GMV +G +YF  MS+
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSE 352

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           E+ I  R EH+ C+VDLL RA ++ +A E I  MPM+P  +IW  LL  C +H + +L E
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
           LA  ++L+LE    G Y LLSN+YA+  RW DV +IR  M   GV+K PG S V+     
Sbjct: 413 LARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRV 472

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F +GD++HPQ+  IY  L  +  R++  GYVPQ S    DV++EEK + L  HSEK+A
Sbjct: 473 HEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIA 532

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+ +++T    PIR+ KNL++C DCH AI  +S + N EI++RD +RFHHFK GSC+C+
Sbjct: 533 IAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 832 GYW 834
            YW
Sbjct: 593 DYW 595



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 205/380 (53%), Gaps = 31/380 (8%)

Query: 72  HLIAAYVSHNAPSP---ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
           HLI   VS  +P P   A  +  +I   P +VF WN LIR    +    +A  L+ +M  
Sbjct: 55  HLIFYLVSLPSPPPMSYAHKVFSKIE-KPINVFIWNTLIRGYAEIGNSVSAVSLYREMRA 113

Query: 129 RGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
            G+  PD +T+PF+LKA G++   R G ++H+V+  SGF S ++V N+L+ +YA C  ++
Sbjct: 114 SGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVA 173

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK-VQGDGVSLVNA 246
            A ++FD+M +    D+V+WN+++  +A++G  E  L L+  M  D+K ++ DG ++V+ 
Sbjct: 174 SAYKVFDKMPEK---DLVAWNSVINGFAENGKPEEALALYTEM--DLKGIKPDGFTIVSL 228

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           LSACA +G  + GK+  +      + +    +++ S N ++  Y+R G  E+A  LF +M
Sbjct: 229 LSACAKIGALTLGKRFHVY-----MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGA 365
               V  N V+W+++I G A  G G EA+++F+ M+   GL P  +T V +L  C+  G 
Sbjct: 284 ----VDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGM 339

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI--APKNRD 423
           +  G E       R +S +      +     ++D+ A+   V  A   ++ I   P   +
Sbjct: 340 VKEGFEYF-----RRMSEEYKIEPRIEHFGCMVDLLARAGQVKKA---YEYILKMPMQPN 391

Query: 424 VATWTVMIGSYSQNGGANDA 443
           V  W  ++G+ + +G ++ A
Sbjct: 392 VVIWRTLLGACTVHGDSDLA 411


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 274/735 (37%), Positives = 401/735 (54%), Gaps = 46/735 (6%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            W A+I    +   PD A  ++  M     +PD+ T    L AC  L     G  +H +  
Sbjct: 367  WTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQ 426

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + GF   V V NAL+ MYA+   +  A ++F  M +    D+VSW++++A +  +  +  
Sbjct: 427  NKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK---DVVSWSSMIAGFCFNHRSFD 483

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERM 275
             L  F  M G VK   + V+ + ALSACA+ G    GK+       CG+  E        
Sbjct: 484  ALYYFRYMLGHVK--PNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVP---- 537

Query: 276  KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
                    NA++  Y + G    A+A F    +++V    V+W+ +++G+   G G  AL
Sbjct: 538  --------NALLDLYVKCGQTSYAWAQFSVHSEKDV----VSWNIMLSGFVAHGLGDIAL 585

Query: 336  DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
             +F QM +  L    +   S L+ CA +G L +G + H       L+ +      ++V N
Sbjct: 586  SLFNQMMYTSL--GRMGACSALAACACLGRLDVGIKLH------ELAQNKGFIRYVVVAN 637

Query: 396  ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            AL++MYAK K +D A  +F  +A K  DV +W+ MI  +  N  + DAL  F  M     
Sbjct: 638  ALLEMYAKSKHIDKAIEVFKFMAEK--DVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-- 693

Query: 456  LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
             VKPN+ T   AL ACA   ALR G++IHAYVLR        +V N L+D+Y + G    
Sbjct: 694  -VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE-GYVPNALLDLYVKCGQTSY 751

Query: 516  ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
            A   F    +++VVSW  +++G+  HGLGD A   F+QM + G  PD VTF VL+ ACS 
Sbjct: 752  AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF-VLMCACSR 810

Query: 576  SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            +GMV QG + F   +++F I    +HYAC+VDLL R  +L EA  LI  MP++P   +W 
Sbjct: 811  AGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWG 870

Query: 636  ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            ALLNGCRIH +VELGELAA  +LELE      + LL ++Y +AG+W  VAR+R  M+  G
Sbjct: 871  ALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKG 930

Query: 696  VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
            +++  GCSWV+ K  T  F   D +HPQ ++I  +L G+ +R+KA G+ P  S    +V 
Sbjct: 931  LEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVS 990

Query: 756  DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
            ++   D+L  HSE+LA+A+G++ T PGT I +TKN   C  CH     IS I+  EI +R
Sbjct: 991  ED---DILCGHSERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVR 1047

Query: 816  DSNRFHHFKEGSCTC 830
            D+ + H FK+G C+C
Sbjct: 1048 DTKQLHCFKDGDCSC 1062



 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 174/542 (32%), Positives = 283/542 (52%), Gaps = 31/542 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           VF WN ++    ++   + A  L+ +M+  G  PD YTFP VL+ CG +P  R G  VHA
Sbjct: 162 VFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHA 221

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GF   V V NAL+ MYA+C  +  AR++FD M    + D +SWN ++A + ++ +
Sbjct: 222 HVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGM---AMTDCISWNAMIAGHFENHE 278

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK-VFERMKVK 278
            E GL LF  M  + +VQ + +++ +   A   L       + G  +E      +R    
Sbjct: 279 CEAGLELFLTMLEN-EVQPNLMTITSVTVASGML------SEVGFAKEMHGFAVKRGFAI 331

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV   N+++  Y+ +G   DA  +F +M  +    + ++W+A+I+GY + G   +AL+V+
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETK----DAMSWTAMISGYEKNGFPDKALEVY 387

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M+   + P+ VT+ S L+ CA +G L +G + H       L+ +      ++V NAL+
Sbjct: 388 ALMELHNVNPDDVTIASALAACACLGRLDVGIKLH------ELAQNKGFIRYVVVANALL 441

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           +MYAK K +D A  +F  +A K  DV +W+ MI  +  N  + DAL  F  M      VK
Sbjct: 442 EMYAKSKHIDKAIEVFKFMAEK--DVVSWSSMIAGFCFNHRSFDALYYFRYMLGH---VK 496

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN+ T   AL ACA   ALR G++IHAYVLR        +V N L+D+Y + G    A  
Sbjct: 497 PNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE-GYVPNALLDLYVKCGQTSYAWA 555

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            F    +++VVSW  +++G+  HGLGD A   F+QM    L   G      L AC+  G 
Sbjct: 556 QFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSLGRMGAC--SALAACACLGR 613

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D G+K    +++  G          ++++  ++  +D+A+E+ + M  E   + W +++
Sbjct: 614 LDVGIK-LHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMA-EKDVVSWSSMI 671

Query: 639 NG 640
            G
Sbjct: 672 AG 673



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 196/395 (49%), Gaps = 18/395 (4%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A  A   L  W R    GM   A+   E       +  NAM++   R G    A+ +F K
Sbjct: 98  AYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLG-NAMLSMLVRFGEIWHAWRVFAK 156

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M + +V     +W+ ++ GY + G   EALD++ +M + G+ P+V T   +L  C  +  
Sbjct: 157 MPERDV----FSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPD 212

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
             +G+E H + ++          D++ V+NAL+ MYAKC  +  AR +FD +A    D  
Sbjct: 213 WRMGREVHAHVLRFGFG------DEVDVLNALVTMYAKCGDIVAARKVFDGMAMT--DCI 264

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W  MI  + +N      L LF  M + +  V+PN  T++   +A   L+ + F +++H 
Sbjct: 265 SWNAMIAGHFENHECEAGLELFLTMLENE--VQPNLMTITSVTVASGMLSEVGFAKEMHG 322

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           + ++  + + + F  N LI MY+  G +  A  +F  ++ ++ +SWT++++GY  +G  D
Sbjct: 323 FAVKRGFAIDVAF-CNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPD 381

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           KA   +  M    + PD VT    L AC+  G +D G+K    +++  G          +
Sbjct: 382 KALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIK-LHELAQNKGFIRYVVVANAL 440

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +++  ++  +D+A+E+ + M  E   + W +++ G
Sbjct: 441 LEMYAKSKHIDKAIEVFKFMA-EKDVVSWSSMIAG 474


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/543 (40%), Positives = 328/543 (60%), Gaps = 26/543 (4%)

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLL 357
           A  +F K+ +    +NV  W+ +I GYA+ G+   A  ++R+M+  GL EP+  T   L+
Sbjct: 72  AHKVFSKIEK---PINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
               ++  + LG+  H   I+   S  GS    + V N+L+ +YA C  V  A  +FD +
Sbjct: 129 KAVTTMADVRLGETIHSVVIR---SGFGSL---IYVQNSLLHLYANCGDVASAYKVFDKM 182

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K  D+  W  +I  +++NG   +ALAL+ +M    K +KP+ FT+   L ACA++ AL
Sbjct: 183 PEK--DLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGAL 238

Query: 478 RFGRQIHAYVL-----RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
             G+++H Y++     RN +       +N L+D+Y+R G ++ A+ +FD +  +N VSWT
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHS------SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRK-EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           SL+ G  ++G G +A   F  M   EGL P  +TF+ +LYACSH GMV +G +YF  M +
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           E+ I  R EH+ C+VDLL RA ++ +A E I+ MPM+P  +IW  LL  C +H + +L E
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
            A  ++L+LE    G Y LLSN+YA+  RW DV +IR  M   GVKK PG S V+     
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F +GD++HPQS  IY  L  +  R+++ GYVPQ S    DV++EEK + +  HSEK+A
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+ +++T   +PI + KNLR+C DCH AI  +S + N EI++RD +RFHHFK GSC+C+
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 832 GYW 834
            YW
Sbjct: 593 DYW 595



 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 206/394 (52%), Gaps = 29/394 (7%)

Query: 72  HLIAAYVSHNAPSP---ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
           HLI   VS  +P P   A  +  +I   P +VF WN LIR    +    +AF L+ +M  
Sbjct: 55  HLIFYLVSLPSPPPMSYAHKVFSKIE-KPINVFIWNTLIRGYAEIGNSISAFSLYREMRV 113

Query: 129 RGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
            G   PD +T+PF++KA   +   R G ++H+V+  SGF S ++V N+L+ +YA C  ++
Sbjct: 114 SGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVA 173

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            A ++FD+M +    D+V+WN+++  +A++G  E  L L+  M     ++ DG ++V+ L
Sbjct: 174 SAYKVFDKMPEK---DLVAWNSVINGFAENGKPEEALALYTEMNSK-GIKPDGFTIVSLL 229

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           SACA +G  + GK+  +      + +    +++ S N ++  Y+R G  E+A  LF +M 
Sbjct: 230 SACAKIGALTLGKRVHVY-----MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM- 283

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGAL 366
              V  N V+W+++I G A  G G EA+++F+ M+   GL P  +T V +L  C+  G +
Sbjct: 284 ---VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G E      +R+       P  +     ++D+ A+   V  A     ++ P   +V  
Sbjct: 341 KEGFE----YFRRMREEYKIEP-RIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQPNVVI 394

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           W  ++G+ + +G ++ A     Q+ Q    ++PN
Sbjct: 395 WRTLLGACTVHGDSDLAEFARIQILQ----LEPN 424


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/719 (35%), Positives = 386/719 (53%), Gaps = 26/719 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           WNA+I       +    F + L  MR G   PD  T   ++  C        GS +H++ 
Sbjct: 214 WNAMISMYSHEEVYSKCF-IVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLC 272

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
            SSG   +V + NAL+ MY+    L  A  LF  M +    D++SWNT++++Y QS    
Sbjct: 273 VSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRR---DVISWNTMISSYVQSNSCV 329

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L    ++    +   + ++  +AL AC+S      G+    M     + +R     ++
Sbjct: 330 EALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAM-----ILQRSLQNVLL 384

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             N+++T YS+  S ED   +F+ M       +VV+ + +  GYA       A+ VF  M
Sbjct: 385 IGNSLLTMYSKCNSMEDTERVFESMPC----YDVVSCNVLTGGYAALEDVANAMRVFSWM 440

Query: 342 QFCGLEPNVVTLVSLLSGCASVGAL-LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +  G++PN +T+++L   C S+G L   G   H Y  +  L        D  + N+LI M
Sbjct: 441 RGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGL------LSDEYITNSLITM 494

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YA C  ++ +  +F  I   N+ V +W  +I +  ++G   +A+ LF  M  Q    K +
Sbjct: 495 YATCGDLESSTGIFSRI--NNKSVISWNAIIAANVRHGRGEEAIKLF--MDSQHAGNKLD 550

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            F L+  L + A LA+L  G Q+H   ++N  +     V N  +DMY + G +D      
Sbjct: 551 RFCLAECLSSSANLASLEEGMQLHGLSVKNGLD-CDSHVVNATMDMYGKCGKMDCMLKTL 609

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
            +   R    W +L++GY  +G   +A   F  M   G  PD VTF+ LL ACSH+G++D
Sbjct: 610 PDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLID 669

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G+ Y++SM+  FG+S   +H  CIVDLLGR  +  EA + I+ MP+ P  +IW +LL+ 
Sbjct: 670 KGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSS 729

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            R H N+++G  AA  LLEL+   D +Y LLSN+YA   RW DV ++RS MK   + KRP
Sbjct: 730 SRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRP 789

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
            CSW++ K   +TF +GDR+H  ++KIY  L  ++ +++ +GYV  TS ALHD D+E+K 
Sbjct: 790 ACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSALHDTDEEQKE 849

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             L+ HSEKLALAYG+L    G+ IRI KNLR+C DCH     +SM+ + EI+LRD  R
Sbjct: 850 HNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHREIVLRDPYR 908



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 226/486 (46%), Gaps = 27/486 (5%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSS 151
           P   S  W+ A +    R  L   AF L   M  R      +    ++ AC   G    +
Sbjct: 2   PHRTSSSWYTA-VSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
            CG+++HA+   +G   NV++  AL+ +Y     +  A++LF EM Q    ++VSW  I+
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQR---NVVSWTAIM 117

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
            A + +G  E  L+ + RM  +  V  +  +L   +S C +L     G Q         +
Sbjct: 118 VALSSNGCMEEALVAYRRMRKE-GVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGL 176

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
              + V      N+++T +  +   +DA  LF +M + +     ++W+A+I+ Y+     
Sbjct: 177 LTHVSVA-----NSLITMFGNLRRVQDAERLFDRMEERDR----ISWNAMISMYSHEEVY 227

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            +   V   M+   ++P+V TL SL+S CAS   + LG   H   +   L         +
Sbjct: 228 SKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHC------SV 281

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            +INAL++MY+    +D A  +F  ++   RDV +W  MI SY Q+    +AL    Q+ 
Sbjct: 282 PLINALVNMYSTAGKLDEAESLFRNMS--RRDVISWNTMISSYVQSNSCVEALETLGQLL 339

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
           Q D+   PN+ T S AL AC+   AL  GR IHA +L+   + ++  + N L+ MYS+  
Sbjct: 340 QTDE-GPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVL-LIGNSLLTMYSKCN 397

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            ++    VF+++   +VVS   L  GY        A   F  MR  G+ P+ +T + L  
Sbjct: 398 SMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQG 457

Query: 572 ACSHSG 577
            C   G
Sbjct: 458 TCKSLG 463



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 44/344 (12%)

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SW   V+G +R G    AF L + MR+ +V L+    ++++     RG        +++ 
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRG--------WQEG 59

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             CG   + +T  + L G   +G  LL    H Y         GS     +V+NA     
Sbjct: 60  AACGAAIHALTHRAGLMGNVYIGTALL----HLY---------GSRG---LVLNA----- 98

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
                    R+ ++      R+V +WT ++ + S NG   +AL  + +M ++  +   NA
Sbjct: 99  --------QRLFWEM---PQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANA 147

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
                +L  C  L     G Q+ A+V+ +     +  VAN LI M+     +  A  +FD
Sbjct: 148 LATVVSL--CGALEDEVAGLQVTAHVVVSGLLTHVS-VANSLITMFGNLRRVQDAERLFD 204

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +++R+ +SW ++++ Y    +  K       MR   + PD  T   L+  C+ S +V  
Sbjct: 205 RMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVAL 264

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           G     S+    G+         +V++   A +LDEA  L   M
Sbjct: 265 G-SGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNM 307



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 120/297 (40%), Gaps = 37/297 (12%)

Query: 50  LTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRR 109
           +TQ  L+  + I  +L        I  Y +      +  +  RI+    SV  WNA+I  
Sbjct: 476 VTQTGLLSDEYITNSL--------ITMYATCGDLESSTGIFSRINNK--SVISWNAIIAA 525

Query: 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
            VR    + A +LF+     G   D +     L +   L S   G  +H +   +G D +
Sbjct: 526 NVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCD 585

Query: 170 VFVCNALMAMYARCDTLS-YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
             V NA M MY +C  +    + L D   +P  C    WNT+++ YA+ G  +     F 
Sbjct: 586 SHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQC----WNTLISGYARYGYFKEAEDTFK 641

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWN---- 284
            M   V  + D V+ V  LSAC+           G++++    +  M     VS      
Sbjct: 642 HMVS-VGQKPDYVTFVALLSACS---------HAGLIDKGMDYYNSMAPTFGVSPGIKHC 691

Query: 285 -AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
             +V    R+G F +A     +M    V  N + W ++++        H+ LD+ R+
Sbjct: 692 VCIVDLLGRLGKFAEAEKFIDEM---PVLPNDLIWRSLLSS----SRTHKNLDIGRK 741



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 14/225 (6%)

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA---AL 477
           +R  ++W   +   ++ G  + A  L   M ++D  V  + F L+  + AC         
Sbjct: 3   HRTSSSWYTAVSGCARCGLESTAFTLLRVMRERD--VPLSGFALASLVTACEHRGWQEGA 60

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G  IHA   R    M   ++   L+ +Y   G +  A+ +F  + QRNVVSWT++M  
Sbjct: 61  ACGAAIHALTHRAGL-MGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVA 119

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
              +G  ++A  A+ +MRKEG+  +      ++  C        GL+    ++    +S 
Sbjct: 120 LSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQ----VTAHVVVSG 175

Query: 598 RAEHYAC---IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
              H +    ++ + G   R+ +A  L + M  E   I W A+++
Sbjct: 176 LLTHVSVANSLITMFGNLRRVQDAERLFDRME-ERDRISWNAMIS 219


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/755 (33%), Positives = 408/755 (54%), Gaps = 32/755 (4%)

Query: 85  PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
            A  L  ++S S  ++  +N+LI   V++   D    LF +  R G   D+Y     L A
Sbjct: 19  SADKLFDKMSKS--NIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAGALTA 76

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C +  +   G  +H +I   G  S V + N+L+ MY++C  + YAR LFD        D 
Sbjct: 77  CSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFD---HSDKLDG 133

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           VSWN+++A Y Q+G  E  L +  +M  +  +  +  +L +AL AC+S   ++  K  G 
Sbjct: 134 VSWNSLIAGYVQNGKYEELLTILQKMHQN-GLAFNTYTLGSALKACSS--NFNGCKMFGT 190

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           M     +   + + DVV   A++  Y++ GS +DA  +F +M    V  NVV ++A++AG
Sbjct: 191 MLHDHAIKLGLHL-DVVVGTALLDMYAKTGSLDDAIQIFDQM----VDKNVVMYNAMMAG 245

Query: 325 YAQRGH-----GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
             Q+        ++AL++F +M+ CG++P++ T  SLL  C  V      K+ H    K 
Sbjct: 246 LLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKN 305

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L        D  + + LID+Y+   S+  A + F++I   N  +   T MI  Y QNG 
Sbjct: 306 GL------LSDEYIGSILIDLYSVLGSMMDALLCFNSI--HNLTIVPMTAMIFGYLQNGE 357

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
              AL+LF ++   ++  KP+ F  S  + +CA +  LR G QI  +  +        F 
Sbjct: 358 FESALSLFYELLTYEE--KPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIF- 414

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            N  I MY++SGD+  A + F  ++  ++VSW++++     HG   +A   F+ M+  G+
Sbjct: 415 QNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGI 474

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+   FL +L ACSH G+V++GL+YFD+M K++ +    +H  C+VDLLGRA RL +A 
Sbjct: 475 EPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAE 534

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LI  +  E  P++W ALL+ CRIH +    +  A +++ELE     SY LL NIY +AG
Sbjct: 535 SLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDAG 594

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
                +++R+LM+   +KK PG SW+Q  +   +F  GDR+H  S +IY  L  ++   K
Sbjct: 595 NKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDRSHKNSGQIYAKLDEMLATTK 654

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
            +          + ++ E   ++ + HSEKLA+A+G+L  +   P+R+ KNLRIC DCH 
Sbjct: 655 RLD--SAKDILGYKIEHEHLTNVNY-HSEKLAVAFGVLYLSESAPVRVMKNLRICLDCHM 711

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +   S++   E+I+RDS RFHHFK+GSC+C  YW
Sbjct: 712 TMKLFSIVEKRELIVRDSVRFHHFKDGSCSCGDYW 746



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 22/289 (7%)

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
           + G    A  LF KM     K N+VT++++I+GY Q  +  + + +F + +  GL+ +  
Sbjct: 13  KCGDTRSADKLFDKMS----KSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKY 68

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
                L+ C+  G L  GK  H   +   L   GS    +++ N+LIDMY+KC  VD AR
Sbjct: 69  NCAGALTACSQSGNLSAGKMIHGLILVYGL---GSQ---VVLTNSLIDMYSKCGQVDYAR 122

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
           ++FD       D  +W  +I  Y QNG   + L +  +M Q    +  N +TL  AL AC
Sbjct: 123 ILFD--HSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNG--LAFNTYTLGSALKAC 178

Query: 472 AR--LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           +        FG  +H + ++    + +  V   L+DMY+++G +D A  +FD +  +NVV
Sbjct: 179 SSNFNGCKMFGTMLHDHAIKLGLHLDV-VVGTALLDMYAKTGSLDDAIQIFDQMVDKNVV 237

Query: 530 SWTSLMTG-YGMHGLGDKAHWA----FDQMRKEGLAPDGVTFLVLLYAC 573
            + ++M G      + DK  +     F +M+  G+ P   T+  LL AC
Sbjct: 238 MYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKAC 286



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + GD  +A  +FD + + N+V++ SL++GY      DK    FD+ R+ GL  D      
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
            L ACS SG +  G K    +   +G+ ++      ++D+  +  ++D A  L +    +
Sbjct: 73  ALTACSQSGNLSAG-KMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSD-K 130

Query: 629 PTPIIWVALLNG 640
              + W +L+ G
Sbjct: 131 LDGVSWNSLIAG 142


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 324/572 (56%), Gaps = 58/572 (10%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN--VVTLVSLLSGCASVGALLLGKE 371
           N+  ++A++  ++Q    H  +  F         PN    T  S+L  CA +  +L G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 372 THCYTIK----RVLSVDGSHPD---------------DLMVI------NALIDMYAKCKS 406
            HC+  K      L V  S  D               D MV+      N LI  Y     
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 407 VDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQN 437
           VD AR++FD +  KN                             R+V +W  MI  Y+QN
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQN 268

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
               DA+ LF QM Q +  + PN  TL   L ACA L AL  G+ IH ++ RN+ E+ + 
Sbjct: 269 EKYADAIELFRQM-QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGL- 326

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F+ N L DMY++ G +  A+ VF  + +R+V+SW+ ++ G  M+G  ++A   F +M ++
Sbjct: 327 FLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 386

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           GL P+ ++F+ LL AC+H+G+VD+GL+YFD M + +GI+ + EHY C+VDLL RA RLD+
Sbjct: 387 GLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQ 446

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A  LI  MPM+P  I+W ALL GCRI+ + E GE    R+LEL+S   GS   L+N+YA+
Sbjct: 447 AESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYAS 506

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            GR  D A  R  M+     K PGCSW++       FF+GD +HPQS +IY ++  L  +
Sbjct: 507 MGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWK 566

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +K  GY P+T   +H++D+EEK D L  HSEKLALA+G++ T+ GT IRI KNLR+C DC
Sbjct: 567 MKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDC 626

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           H AI  IS I+  EI++RD +RFHHFK+G C+
Sbjct: 627 HDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 156/526 (29%), Positives = 253/526 (48%), Gaps = 78/526 (14%)

Query: 38  KITSLLLRQCKSLT--QVYLIHQQIIVQNLTHVPPSHLIAAYV----SHNAPSPALSLLQ 91
           K   LLLR    L+  Q++ I  QII   +  + P+ +   ++    SH     ++ +  
Sbjct: 23  KTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFN 82

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQ--MMRRGWHPDEYTFPFVLKACGELP 149
                P ++F +NAL++   +          F    ++    +PDEYTF  VLKAC  L 
Sbjct: 83  HFLSFP-NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLA 141

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
               G  VH  +   G +SN+FV N+L+ +Y +      A++LFDEM    + D+VSWNT
Sbjct: 142 QVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMV---VRDVVSWNT 198

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           +++ Y  SG  +   M+F           DG+   N +S    +  ++R    G +EEA+
Sbjct: 199 LISGYCFSGMVDKARMVF-----------DGMMEKNLVSWSTMISGYAR---VGNLEEAR 244

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           ++FE M +++VVSWNAM+ GY++   + DA  LF++M+ E                    
Sbjct: 245 QLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEG------------------- 285

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
                          GL PN VTLVS+LS CA +GAL LGK  H +  +  + V      
Sbjct: 286 ---------------GLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEV------ 324

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            L + NAL DMYAKC  V  A+ +F  +    RDV +W+++I   +  G AN+A   F +
Sbjct: 325 GLFLGNALADMYAKCGCVLEAKGVFHEM--HERDVISWSIIIMGLAMYGYANEAFNFFAE 382

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMY 507
           M +    ++PN  +    L AC     +  G  +  + +  Q   + P + +  C++D+ 
Sbjct: 383 MIEDG--LEPNDISFMGLLTACTHAGLVDKG--LEYFDMMPQVYGITPKIEHYGCVVDLL 438

Query: 508 SRSGDIDTARVVFDNLK-QRNVVSWTSLMTG---YGMHGLGDKAHW 549
           SR+G +D A  + +++  Q NV+ W +L+ G   Y     G++  W
Sbjct: 439 SRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVW 484


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/671 (36%), Positives = 378/671 (56%), Gaps = 38/671 (5%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY +C  L  A ++F  M      ++VSW  ++  + + GDA G L L   M    +   
Sbjct: 1   MYVKCGELDLACEVFGGMRDR---NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAP 57

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           +  +L  +L AC  +G  +     G+      V    +  DVV+ +++V  YS+ G   D
Sbjct: 58  NEYTLSASLKACCVVGDTA----AGVGIHGLCVRAGYQEHDVVA-SSLVLVYSKGGRIGD 112

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF--CGLEPNVVTLVSL 356
           A  +F       +   + TW+A+++GYA  GHG +AL VFR+M+      +P+  T  SL
Sbjct: 113 ARRVFDGA---GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASL 169

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDG-SHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           L  C+ +GA   G + H       ++  G S   + ++  AL+DMY KC+ + VA  +F+
Sbjct: 170 LKACSGLGATREGAQVHA-----AMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFE 224

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            +  KN  V  WT ++  ++Q G   +AL LF + ++     +P++  LS  +   A  A
Sbjct: 225 RLERKN--VIQWTAVVVGHAQEGQVTEALELFRRFWRSG--ARPDSHVLSSVVGVLADFA 280

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
            +  GRQ+H Y +++     +    N ++DMY + G  D A  +F  ++  NVVSWT+++
Sbjct: 281 LVEQGRQVHCYGIKDPTGTDVS-AGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMV 339

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
            G G HGLG +A   F++MR  G+ PD VT+L LL ACSH+G+VD+  +YF  + ++  +
Sbjct: 340 NGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTV 399

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAAN 655
             +AEHYAC+VDLLGRA  L EA +LI  MPMEPT  +W  LL+ CR+H +V +G  A +
Sbjct: 400 RPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGD 459

Query: 656 RLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKEGTATF 714
            LL ++ +   +Y  LSN+ A AG W++  ++R  M+  G+KK+ GCSWV+ GKE    F
Sbjct: 460 VLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKE--VHF 517

Query: 715 FVG----DRTHPQSQKIYEILAGLVQRIKA-MGY-VPQTSFALHDVDDEEKGDLLFEHSE 768
           F G    + THPQ+  I  +L  +  R++  +GY      FALHDVD+E + + L  HSE
Sbjct: 518 FYGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSE 577

Query: 769 KLA-----LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
           +LA     L  G+     G PIR+ KNLR+CGDCH     +S ++   +++RD+NRFH F
Sbjct: 578 RLAVGLWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRF 637

Query: 824 KEGSCTCKGYW 834
           + GSC+CK YW
Sbjct: 638 EHGSCSCKDYW 648



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 208/447 (46%), Gaps = 24/447 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH-PDEYTFPFVLKACGELPSSRCGSSV 157
           +V  W AL+   +R        RL  +M       P+EYT    LKAC  +  +  G  +
Sbjct: 22  NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGI 81

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQ 216
           H +   +G+  +  V ++L+ +Y++   +  AR++FD     G+   I +WN +V+ YA 
Sbjct: 82  HGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFD---GAGLGSGIATWNAMVSGYAH 138

Query: 217 SGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           +G     L++F  M   + + Q D  +  + L AC+ LG    G Q   +  A       
Sbjct: 139 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQ---VHAAMTASGFS 195

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              + +   A+V  Y +      A  +F+++ ++NV    + W+AV+ G+AQ G   EAL
Sbjct: 196 TASNAILAGALVDMYVKCRRLPVAMQVFERLERKNV----IQWTAVVVGHAQEGQVTEAL 251

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           ++FR+    G  P+   L S++   A    +  G++ HCY IK     D S        N
Sbjct: 252 ELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVS------AGN 305

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +++DMY KC   D A  MF  +   N  V +WT M+    ++G   +A+ALF +M  +  
Sbjct: 306 SIVDMYLKCGLPDEAERMFREMRAPN--VVSWTTMVNGLGKHGLGREAVALFEEM--RAG 361

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            V+P+  T    L AC+    +   R+  + + R++          C++D+  R+G++  
Sbjct: 362 GVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELRE 421

Query: 516 ARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           AR +   +     V  W +L++   +H
Sbjct: 422 ARDLIRTMPMEPTVGVWQTLLSACRVH 448


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/602 (38%), Positives = 338/602 (56%), Gaps = 24/602 (3%)

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---DVVSWNAMVTGYSRI 293
           + D VSL   +  C   GT   G+      EA              +   N++V+ Y++ 
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ-RGHGHEALDVFRQMQFCGLEPNVVT 352
           G  +DA  LF +M + NV    VTW+ V+A  A   G   EAL     M   G+ PN  T
Sbjct: 129 GLLDDALRLFDRMPERNV----VTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYT 184

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
             S+L  C + G L      H  T+K  L        D+ V ++LID Y K   +D  R 
Sbjct: 185 FSSVLGACGTPGVL---AALHASTVKVGLD------SDVFVRSSLIDAYMKLGDLDGGRR 235

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD +    RD+  W  +I  ++Q+G    A+ LF +M  +D     N  TL+  L AC 
Sbjct: 236 VFDEMV--TRDLVVWNSIIAGFAQSGDGVGAIELFMRM--KDAGFSANQGTLTSVLRACT 291

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            +  L  GRQ+HA+VL+ + ++++    N L+DMY + G ++ A  +F  + QR+V+SW+
Sbjct: 292 GMVMLEAGRQVHAHVLKYERDLIL---HNALLDMYCKCGSLEDAEALFHRMPQRDVISWS 348

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           ++++G   +G   +A   FD M+ EG+AP+ +T + +L+ACSH+G+V+ G  YF SM K 
Sbjct: 349 TMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKL 408

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
           FGI    EH+ C+VDLLGRA +LDEAVE I  M +EP  +IW  LL  CR+H +  L   
Sbjct: 409 FGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAY 468

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
           AA  +L+LE +  G+  LLSN YA+  +W D  +    M+  G+KK PG SW++ ++   
Sbjct: 469 AAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVH 528

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F  GD +HP S  I + L  L+ RI A+GYVPQT F L D+  E+K DLL  HSEK+A+
Sbjct: 529 VFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAI 588

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           A+G +    G PIRI KNLRICGDCH+    +S      II+RD  RFHHF++G+C+C  
Sbjct: 589 AFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGD 648

Query: 833 YW 834
           YW
Sbjct: 649 YW 650



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 246/527 (46%), Gaps = 60/527 (11%)

Query: 59  QIIVQNLTHVPPSHLIAAYV-------SHNAPSPALSLLQRIS-PSPFSVFWWNALIRRA 110
           ++++++L   PP + +AA         +   P P+L++  R+    PF           A
Sbjct: 6   RVLMKSLFKRPPRNRLAATRRSSRPVHTQPPPHPSLAIFSRLCVEGPFPAALALLPDLAA 65

Query: 111 VRLRL-PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
             LR  P +  RL    +R G   D       ++A G+L              S G    
Sbjct: 66  AGLRADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHY-----------SGGAGGG 114

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS-GDAEGGLMLFA 228
           +FV N+L++MYA+   L  A +LFD M +    ++V+W T+VAA A + G  E  L    
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPER---NVVTWTTVVAALANADGRKEEALRFLV 171

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M  D  V  +  +  + L AC + G  +      +     KV       DV   ++++ 
Sbjct: 172 AMWRD-GVAPNAYTFSSVLGACGTPGVLA-----ALHASTVKVGLD---SDVFVRSSLID 222

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y ++G  +    +F +M    V  ++V W+++IAG+AQ G G  A+++F +M+  G   
Sbjct: 223 AYMKLGDLDGGRRVFDEM----VTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSA 278

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           N  TL S+L  C  +  L  G++ H + +K        +  DL++ NAL+DMY KC S++
Sbjct: 279 NQGTLTSVLRACTGMVMLEAGRQVHAHVLK--------YERDLILHNALLDMYCKCGSLE 330

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A  +F  +    RDV +W+ MI   +QNG + +AL +F  M  + + V PN  T+   L
Sbjct: 331 DAEALFHRMP--QRDVISWSTMISGLAQNGKSAEALRVFDLM--KSEGVAPNRITMVGVL 386

Query: 469 MACARLAALRFGRQIHAYVLRNQYEM--LIPFVA--NCLIDMYSRSGDIDTA-RVVFDNL 523
            AC+    +  G     Y  R+  ++  + P     NC++D+  R+G +D A   + D  
Sbjct: 387 FACSHAGLVEDG----WYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMN 442

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            + + V W +L+    MH  G+ A +A  ++ K  L PD     VLL
Sbjct: 443 LEPDAVIWRTLLGACRMHKSGNLAAYAAREILK--LEPDDQGARVLL 487


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/748 (34%), Positives = 398/748 (53%), Gaps = 29/748 (3%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  + +I+ YV     S A  L   +     +V  W  L+         D AF+LF QM 
Sbjct: 76  VSTNTMISGYVKMGDLSSARHLFDAMPDR--TVVTWTILMGWYAGNNHFDEAFKLFRQMC 133

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF--VCNALMAMYARCDT 185
           R    PD  TF  +L  C +         VHA     GFD+N+F  VCN L+  Y     
Sbjct: 134 RSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRR 193

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L  A  LF+E+      D V++NT++  Y + G     + LF +M        D  +   
Sbjct: 194 LDLACVLFEEILDK---DSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSD-FTFSG 249

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            L A   L  ++ G+Q   +      F R    D    N ++  YS+     +   LF +
Sbjct: 250 VLKAVVGLHDFALGQQLHGLS-VTTGFSR----DASVGNQILHFYSKHDRVLETRNLFNE 304

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M +    L+ V+++ VI+ Y+Q     E+L++FR+MQ  G +       ++LS  A++ +
Sbjct: 305 MPE----LDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSS 360

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L +G++ HC  I  V + D      L V N+L+DMYAKC+  D A ++F +++   R   
Sbjct: 361 LQVGRQVHCQAI--VATADSI----LHVGNSLVDMYAKCEMFDEAELIFKSLS--QRSTV 412

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +WT +I  Y Q G     L LF +M   +  ++ +  T +  L A A  A+L  G+Q+HA
Sbjct: 413 SWTALISGYVQKGLHGAGLKLFTKMRGAN--LRADQSTFATVLKASAGFASLLLGKQLHA 470

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           +++R+   +   F  + L+DMY++ G I  A  VF+ +  RN VSW +L++ Y  +G G+
Sbjct: 471 FIIRSG-NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGE 529

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
            A  AF +M + GL PD V+ L +L ACSH G V+QG ++F +MS  +GI+ + +HYAC+
Sbjct: 530 AAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACM 589

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           +DLLGR  R  EA +L++ MP EP  I+W ++LN CRI+ N  L E AA +L  +E  +D
Sbjct: 590 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRD 649

Query: 666 -GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
             +Y  +SNIYA AG+W++V  ++  M+  G+KK P  SWV+       F   D+THP  
Sbjct: 650 AAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNG 709

Query: 725 QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
            +I + +  L   I+  GY P TS  + D+D++ K + L  HSE+LA+A+ +++T  G P
Sbjct: 710 DEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFALISTPEGCP 769

Query: 785 IRITKNLRICGDCHSAITFISMIINHEI 812
           I + KNLR C DCH+AI  IS I+   I
Sbjct: 770 IVVMKNLRACRDCHAAIKLISKIVKRVI 797



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 176/383 (45%), Gaps = 25/383 (6%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A KV++ M  K+ VS N M++GY ++G    A  LF  M        VVTW+ ++
Sbjct: 58  GQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDR----TVVTWTILM 113

Query: 323 AGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
             YA   H  EA  +FRQM + C L P+ VT  +LL GC          + H + +K  L
Sbjct: 114 GWYAGNNHFDEAFKLFRQMCRSCTL-PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVK--L 170

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             D +    L V N L+  Y + + +D+A V+F+ I   ++D  T+  +I  Y ++G   
Sbjct: 171 GFDTNL--FLTVCNVLLKSYCEVRRLDLACVLFEEIL--DKDSVTFNTLITGYEKDGLYT 226

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A+ LF +M Q     KP+ FT S  L A   L     G+Q+H   +   +      V N
Sbjct: 227 EAIHLFLKMRQSGH--KPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDAS-VGN 283

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            ++  YS+   +   R +F+ + + + VS+  +++ Y      +++   F +M+  G   
Sbjct: 284 QILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDR 343

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY----ACIVDLLGRANRLDE 617
               F  +L   ++   +  G +          I A A+        +VD+  +    DE
Sbjct: 344 RNFPFATMLSIAANLSSLQVGRQVHCQ-----AIVATADSILHVGNSLVDMYAKCEMFDE 398

Query: 618 AVELIEGMPMEPTPIIWVALLNG 640
           A ELI     + + + W AL++G
Sbjct: 399 A-ELIFKSLSQRSTVSWTALISG 420


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 349/575 (60%), Gaps = 49/575 (8%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CGMM +A+++F+ M  K+++SWN ++ G    G + +AF LF  M Q            
Sbjct: 178 KCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQX----------- 226

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
               ++  G                        V+++   A +G +  G++ H  ++K  
Sbjct: 227 ----FSDAGSR--------------------MFVTMIRASAGLGLIFAGRQLHSCSLK-- 260

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             V G    D+ V  ALIDMY+KC S++ A+ +FD +  K      W  +I  Y+ +G +
Sbjct: 261 TGVGG----DVFVACALIDMYSKCGSIEDAQCVFDQMPEKT--TVGWNSIIAGYALHGYS 314

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL+++ +M  +D  VK + FT S  +  CARLA+L   +Q HA ++R+ + + I  VA
Sbjct: 315 EEALSMYYEM--RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDI--VA 370

Query: 501 N-CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           N  L+D+YS+ G I+ A+ VFD +  +NV+SW +L+ GYG HG G +A   F++M  EG+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ VTFL +L ACS+SG+ D+G + F+SMS++  I  RA HYAC+++LLGR   LDEA 
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LI+  P +PT  +W ALL  CR+H N ELG+ AA +L  +  EK  +Y +L NIY  +G
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSG 550

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           R ++ A +   +K  G++  P CSW++ K+    F  GD+ H QS++IY+ L  L+  I 
Sbjct: 551 RLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEIS 610

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVPQ  F L DVD++E+  LL+ HSEKLA+A+G++ T+  TP++I ++ RICGDCHS
Sbjct: 611 KHGYVPQXKFLLPDVDEQEERVLLY-HSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHS 669

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI  I+++   EI++RD++RFHHFK+GSC+C  YW
Sbjct: 670 AIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/514 (23%), Positives = 223/514 (43%), Gaps = 80/514 (15%)

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           I + V  +    A  LF  +   G +  D  T+  ++ AC  L S R    V   + +SG
Sbjct: 102 IEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSG 161

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
            D + ++ N ++ M+ +C  +  AR+LFDEM +    +I+SWNTI+     +GD      
Sbjct: 162 LDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEK---NILSWNTIIGGLVDAGDYFEAFR 218

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------------ 261
           LF  M       G  +  V  + A A LG    G+Q                        
Sbjct: 219 LFLMMWQXFSDAGSRM-FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMY 277

Query: 262 --CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             CG +E+A+ VF++M  K  V WN+++ GY+  G  E+A +++ +MR   VK++  T+S
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFS 337

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
            +I                                     CA + +L   K+ H   ++ 
Sbjct: 338 III-----------------------------------RICARLASLEHAKQAHAGLVRH 362

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
              +      D++   AL+D+Y+K   ++ A+ +FD +  KN  V +W  +I  Y  +G 
Sbjct: 363 GFGL------DIVANTALVDLYSKWGRIEDAKHVFDMMPHKN--VISWNALIAGYGNHGR 414

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +A+ +F +M  +  +  PN  T    L AC+       G +I   + R+         
Sbjct: 415 GVEAVEMFERMLHEGMV--PNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMH 472

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
             C+I++  R G +D A  +  +   +  V+ W +L+T   +H   +   +A +++   G
Sbjct: 473 YACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLY--G 530

Query: 559 LAPDGVT-FLVLLYACSHSGMVDQGLKYFDSMSK 591
           + P+ ++ ++VLL   + SG +++      ++ +
Sbjct: 531 MGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKR 564



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 30/269 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN +I   V       AFRLFL M +         F  +++A   L     G  +H
Sbjct: 196 NILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLH 255

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +    +G   +VFV  AL+ MY++C ++  A+ +FD+M +      V WN+I+A YA  G
Sbjct: 256 SCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEK---TTVGWNSIIAGYALHG 312

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC---------------- 262
            +E  L ++  M  D  V+ D  +    +  CA L +    KQ                 
Sbjct: 313 YSEEALSMYYEMR-DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVAN 371

Query: 263 ----------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                     G +E+AK VF+ M  K+V+SWNA++ GY   G   +A  +F++M  E + 
Sbjct: 372 TALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            N VT+ AV++  +  G      ++F  M
Sbjct: 432 PNHVTFLAVLSACSYSGLSDRGWEIFESM 460



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 101/208 (48%), Gaps = 4/208 (1%)

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           ++AL LF ++ + +     ++ T    + AC  L ++R  +++  Y++ +  +    ++ 
Sbjct: 112 HEALELF-EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDP-DEYLR 169

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           N ++ M+ + G +  AR +FD + ++N++SW +++ G    G   +A   F  M +    
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSD 229

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
                F+ ++ A +  G++  G +   S S + G+         ++D+  +   +++A  
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAG-RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQC 288

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVE 648
           + + MP E T + W +++ G  +H   E
Sbjct: 289 VFDQMP-EKTTVGWNSIIAGYALHGYSE 315


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 342/553 (61%), Gaps = 17/553 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  YS + S ++A  +F K R    K  +  W+A+       G+G E LD++R+M   G
Sbjct: 119 LINMYSELDSIDNARKVFDKTR----KRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG 174

Query: 346 LEPNVVTLVSLLSGC----ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           +  +  T   +L  C    A V  LL G+E H + ++     +G     + ++  L+DMY
Sbjct: 175 VPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRH--GFEGH----VHIMTTLLDMY 228

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           A+   V  A  +FD +  KN  V +W+ MI  YS+NG   +AL LF +M  +++ + PN+
Sbjct: 229 ARFGCVLNASRVFDQMPVKN--VVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNS 286

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            T+   L ACA LAAL  G+ +H Y+LR   + ++P V+  L+ +Y+R G+++    VF+
Sbjct: 287 VTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVS-ALVTVYARCGNLELGHRVFE 345

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +++R+VVSW SL++ YG+HG G KA   F +M  +GL+P  ++F+ +L ACSH+G+V++
Sbjct: 346 RMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEE 405

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G   F+SM +   I    EHYAC+VDLLGRANRLDEA ++I+ M +EP P +W +LL  C
Sbjct: 406 GKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSC 465

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RIH NVEL E A +RL ELE    G+Y LL++IYA A  W +V R++ L++  G++K PG
Sbjct: 466 RIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPG 525

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            S ++ +    +F   D  +PQ ++++ +L  L   +K  GYVP T   L+D+D EEK  
Sbjct: 526 RSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKER 585

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
           ++  HSEKLALA+G++ +  G  IRITKNLR+C DCHS   FIS   N EI++RD NRFH
Sbjct: 586 IVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFH 645

Query: 822 HFKEGSCTCKGYW 834
            F++G C+C  YW
Sbjct: 646 LFQDGVCSCGDYW 658



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 160/352 (45%), Gaps = 41/352 (11%)

Query: 26  IKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSH 80
           +++ S    P      LL+  C    SL Q   +H+ +I       P   + LI  Y   
Sbjct: 67  LQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSEL 126

Query: 81  NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
           ++   A  +  +      +++ WNAL R             L+ +M R G   D +T+ +
Sbjct: 127 DSIDNARKVFDKTRKR--TIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTY 184

Query: 141 VLKAC--GELPSSRC--GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           VLKAC   E   S    G  +H  I   GF+ +V +   L+ MYAR   +  A ++FD+M
Sbjct: 185 VLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQM 244

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALSACASLGT 255
               + ++VSW+ ++A Y+++G     L LF +M   +  +  + V++V+ L ACA+L  
Sbjct: 245 ---PVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAA 301

Query: 256 WSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
             +GK                          +CG +E   +VFERM+ +DVVSWN++++ 
Sbjct: 302 LEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISS 361

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           Y   G    A  +FK+M  + +  + +++ +V+   +  G   E   +F  M
Sbjct: 362 YGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESM 413



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 14/247 (5%)

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           N D      +I S  + G  N AL    Q+  Q+    P   T    +++C R  +L  G
Sbjct: 44  NGDSNNNNPLIQSLCKQGNLNQAL----QVLSQEP--NPTQHTYELLILSCTRQNSLPQG 97

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             +H +++ +  +   PF+A  LI+MYS    ID AR VFD  ++R +  W +L     +
Sbjct: 98  IDLHRHLIHDGSDQ-DPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTL 156

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS----GMVDQGLKYFDSMSKEFGIS 596
            G G +    + +M + G+  D  T+  +L AC  S     ++  G +    + +  G  
Sbjct: 157 AGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRH-GFE 215

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
                   ++D+  R   +  A  + + MP++   + W A++  C       L  L   R
Sbjct: 216 GHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNV-VSWSAMI-ACYSKNGKPLEALELFR 273

Query: 657 LLELESE 663
            + LE++
Sbjct: 274 KMMLENQ 280


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/528 (40%), Positives = 322/528 (60%), Gaps = 24/528 (4%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKET 372
           N+ TW+ +I G+A+  +   A+++F QM     + P+  T   L    A +  + LG+  
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 373 HCYTIKRVLSVDGSHPDDL-MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           H   ++          D L  V N+L+ MY+     + A  +F+ ++   RD   W  +I
Sbjct: 159 HSVVVRNGF-------DSLRFVQNSLVHMYSVFGFAESAYQVFEIMS--YRDRVAWNSVI 209

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-- 489
             ++ NG  N+AL L+ +M  +   V+P+ FT+   L AC  L AL  G ++H Y+++  
Sbjct: 210 NGFALNGMPNEALTLYREMGSEG--VEPDGFTMVSLLSACVELGALALGERVHMYMVKVG 267

Query: 490 ---NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
              NQ+       +N L+D+YS+ G+   A+ VFD +++R+VVSWTSL+ G  ++GLG++
Sbjct: 268 LVQNQH------ASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNE 321

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F ++ ++GL P  +TF+ +LYACSH GM+D+G  YF  M +E+GI  R EH+ C+V
Sbjct: 322 ALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMV 381

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666
           DLL RA ++ +A + I  MP+ P  +IW  LL  C IH ++ELGE+A   +  LE    G
Sbjct: 382 DLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSG 441

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
            + LLSN+YA+  RW DV  +R +M   GVKK PG S V+ K     F +GDR+HPQS++
Sbjct: 442 DFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEE 501

Query: 727 IYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIR 786
            Y +LA + Q +K  GYVP+T   L D+++EEK   L  H+EK+A+A+ ++ T PGTPIR
Sbjct: 502 TYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIR 561

Query: 787 ITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I KNLR+C DCH AI  IS +   EII+RD +RFHHFK+GSC+CK YW
Sbjct: 562 IMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 180/339 (53%), Gaps = 28/339 (8%)

Query: 41  SLLLRQCKSLTQVYLIHQ----QIIVQNLTH-VPPS------HLIAAYVSHNAP-SPALS 88
           S +LR+C SL Q+    Q    QI   ++ H VPP       HLI A VS +AP S A  
Sbjct: 31  SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQ 90

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM-MRRGWHPDEYTFPFVLKACGE 147
           +  +I     ++F WN +IR       P  A  LF QM       PD +TFPF+ KA  +
Sbjct: 91  IFNQIQAP--NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAK 148

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSW 207
           L     G  +H+V+  +GFDS  FV N+L+ MY+       A Q+F+ M      D V+W
Sbjct: 149 LMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIM---SYRDRVAW 205

Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           N+++  +A +G     L L+  M G   V+ DG ++V+ LSAC  LG  + G++  M   
Sbjct: 206 NSVINGFALNGMPNEALTLYREM-GSEGVEPDGFTMVSLLSACVELGALALGERVHMY-- 262

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              + +   V++  + NA++  YS+ G+F DA  +F +M + +V    V+W+++I G A 
Sbjct: 263 ---MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSV----VSWTSLIVGLAV 315

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            G G+EAL +F +++  GL+P+ +T V +L  C+  G L
Sbjct: 316 NGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGML 354



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 27/236 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I       +P+ A  L+ +M   G  PD +T   +L AC EL +   G  VH  + 
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMV 264

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   N    NAL+ +Y++C     A+++FDEM +     +VSW +++   A +G    
Sbjct: 265 KVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEER---SVVSWTSLIVGLAVNGLGNE 321

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--- 276
            L LF    G+++ QG     ++ V  L AC+          CGM++E    F RMK   
Sbjct: 322 ALKLF----GELERQGLKPSEITFVGVLYACS---------HCGMLDEGFNYFRRMKEEY 368

Query: 277 --VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
             +  +     MV    R G   DA+   + M    V  N V W  ++      GH
Sbjct: 369 GILPRIEHHGCMVDLLCRAGKVGDAYDYIRNM---PVPPNAVIWRTLLGACTIHGH 421



 Score = 47.8 bits (112), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 111/280 (39%), Gaps = 51/280 (18%)

Query: 481 RQIHAYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           +QIHA+ +R+      P F  + +  + S S  +  A  +F+ ++  N+ +W +++ G+ 
Sbjct: 52  KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFA 111

Query: 540 MHGLGDKAHWAFDQMR-KEGLAPDGVTFLVLLYACS-----------HSGMVDQGLKYF- 586
                  A   F QM     + PD  TF  L  A +           HS +V  G     
Sbjct: 112 ESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLR 171

Query: 587 ---DSMSKEFGISARAEHYACIVDLLGRANRL---------------DEAVELIEGM--- 625
              +S+   + +   AE    + +++   +R+               +EA+ L   M   
Sbjct: 172 FVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSE 231

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG------SYTLLSNIYANAG 679
            +EP     V+LL+ C     VELG LA    + +   K G      +   L ++Y+  G
Sbjct: 232 GVEPDGFTMVSLLSAC-----VELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCG 286

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
            ++D  ++   M     ++R   SW     G A   +G+ 
Sbjct: 287 NFRDAQKVFDEM-----EERSVVSWTSLIVGLAVNGLGNE 321


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/688 (35%), Positives = 397/688 (57%), Gaps = 36/688 (5%)

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
           R  + +HA++  S   S+  + ++L A YAR   L+ A              I +WN I+
Sbjct: 25  RTLARLHALLIVSSSASHTLI-SSLAAAYARAGDLAAAESTLTATAASSS--IAAWNAII 81

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           AA+++ G     L +F  +      + D  +   ALSACA LG    G+         + 
Sbjct: 82  AAHSRRGSPASALRVFRALPP--AARPDSTTFTLALSACARLGDLRGGESV-----RDRA 134

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+     DV   ++++  Y+R G+  DA  +F +M + +     VTWS ++AG+   G  
Sbjct: 135 FDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDR----VTWSTMVAGFVSAGQP 190

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            +A+ ++R+M+  G++ + V ++ ++  C +   + +G   H + ++  + +D      +
Sbjct: 191 LDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD------V 244

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +   +L+DMYAK   +DVA  +F  +  +N DV +W+ MI  ++QNG +++AL LF  M 
Sbjct: 245 VTATSLVDMYAKNGLLDVACRVFGLMVHRN-DV-SWSAMISGFAQNGQSDEALRLFRNM- 301

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL-----IDM 506
            Q   ++P++  L  AL+AC+ +  L+ GR +H +++R        F  NC+     IDM
Sbjct: 302 -QASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-------FDFNCILGTAAIDM 353

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           YS+ G + +A+++F+ +  R+++ W +++   G HG G  A   F +M + G+ PD  TF
Sbjct: 354 YSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
             LL A SHSG+V++G  +F  M   F I+   +HY C+VDLL R+  ++EA +L+  M 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
            EPT  IWVALL+GC  +  +ELGE  A+ +LEL+ +  G   L+SN+YA   +W  V +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R LMK +G KK PGCS ++ +     F + D++HPQ ++I   +A L   ++ MGY+P+
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           T F  HD+++E K   L  HSE+LA+A+G+L T PGT + I KNLR+CGDCH AI +IS 
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I + EI++RD+ RFHHFK+G C+C+ YW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 223/428 (52%), Gaps = 36/428 (8%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P +A R+F + +     PD  TF   L AC  L   R G SV      +G+  +VFVC++
Sbjct: 90  PASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSS 148

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+ +YAR   +  A ++F  M +    D V+W+T+VA +  +G     + ++ RM  D  
Sbjct: 149 LLHLYARWGAMGDAVKVFVRMPRR---DRVTWSTMVAGFVSAGQPLDAIQMYRRMRED-G 204

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           V+GD V ++  + AC    T +R  + G       +   M++ DVV+  ++V  Y++ G 
Sbjct: 205 VKGDEVVMIGVIQAC----TAARNVRMGASVHGHLLRHGMRM-DVVTATSLVDMYAKNGL 259

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            + A  +F  M    V  N V+WSA+I+G+AQ G   EAL +FR MQ  G++P+   LVS
Sbjct: 260 LDVACRVFGLM----VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C+++G L LG+  H + ++R          + ++  A IDMY+KC S+  A+++F+
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRRF-------DFNCILGTAAIDMYSKCGSLASAQMLFN 368

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA--- 472
            I+  +RD+  W  MI     +G   DAL LF +M +    ++P+  T +  L A +   
Sbjct: 369 MIS--DRDLILWNAMIACCGAHGRGQDALTLFQEMNETG--MRPDHATFASLLSALSHSG 424

Query: 473 --RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
                 L FGR ++ + +    +  +     CL+D+ +RSG ++ A  +  ++K    V+
Sbjct: 425 LVEEGKLWFGRMVNHFKITPAEKHYV-----CLVDLLARSGLVEEASDLLTSMKAEPTVA 479

Query: 531 -WTSLMTG 537
            W +L++G
Sbjct: 480 IWVALLSG 487


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/688 (35%), Positives = 397/688 (57%), Gaps = 36/688 (5%)

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
           R  + +HA++  S   S+  + ++L A YAR   L+ A              I +WN I+
Sbjct: 25  RTLARLHALLIVSSSASHTLI-SSLAAAYARAGDLAAAESTLTATAA--SSSIAAWNAII 81

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           AA+++ G     L +F  +      + D  +   ALSACA LG    G+         + 
Sbjct: 82  AAHSRRGSPASALRVFRALP--PAARPDSTTFTLALSACARLGDLRGGESV-----RDRA 134

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F+     DV   ++++  Y+R G+  DA  +F +M + +     VTWS ++AG+   G  
Sbjct: 135 FDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDR----VTWSTMVAGFVSAGQP 190

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            +A+ ++R+M+  G++ + V ++ ++  C +   + +G   H + ++  + +D      +
Sbjct: 191 LDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD------V 244

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +   +L+DMYAK   +DVA  +F  +  +N DV +W+ MI  ++QNG +++AL LF  M 
Sbjct: 245 VTATSLVDMYAKNGLLDVACRVFGLMVHRN-DV-SWSAMISGFAQNGQSDEALRLFRNM- 301

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL-----IDM 506
            Q   ++P++  L  AL+AC+ +  L+ GR +H +++R        F  NC+     IDM
Sbjct: 302 -QASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-------FDFNCILGTAAIDM 353

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           YS+ G + +A+++F+ +  R+++ W +++   G HG G  A   F +M + G+ PD  TF
Sbjct: 354 YSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
             LL A SHSG+V++G  +F  M   F I+   +HY C+VDLL R+  ++EA +L+  M 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
            EPT  IWVALL+GC  +  +ELGE  A+ +LEL+ +  G   L+SN+YA   +W  V +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R LMK +G KK PGCS ++ +     F + D++HPQ ++I   +A L   ++ MGY+P+
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           T F  HD+++E K   L  HSE+LA+A+G+L T PGT + I KNLR+CGDCH AI +IS 
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I + EI++RD+ RFHHFK+G C+C+ YW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 223/428 (52%), Gaps = 36/428 (8%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P +A R+F + +     PD  TF   L AC  L   R G SV      +G+  +VFVC++
Sbjct: 90  PASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSS 148

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           L+ +YAR   +  A ++F  M +    D V+W+T+VA +  +G     + ++ RM  D  
Sbjct: 149 LLHLYARWGAMGDAVKVFVRMPRR---DRVTWSTMVAGFVSAGQPLDAIQMYRRMRED-G 204

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
           V+GD V ++  + AC    T +R  + G       +   M++ DVV+  ++V  Y++ G 
Sbjct: 205 VKGDEVVMIGVIQAC----TAARNVRMGASVHGHLLRHGMRM-DVVTATSLVDMYAKNGL 259

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
            + A  +F  M    V  N V+WSA+I+G+AQ G   EAL +FR MQ  G++P+   LVS
Sbjct: 260 LDVACRVFGLM----VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
            L  C+++G L LG+  H + ++R          + ++  A IDMY+KC S+  A+++F+
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRRF-------DFNCILGTAAIDMYSKCGSLASAQMLFN 368

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA--- 472
            I+  +RD+  W  MI     +G   DAL LF +M +    ++P+  T +  L A +   
Sbjct: 369 MIS--DRDLILWNAMIACCGAHGRGQDALTLFQEMNETG--MRPDHATFASLLSALSHSG 424

Query: 473 --RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
                 L FGR ++ + +    +  +     CL+D+ +RSG ++ A  +  ++K    V+
Sbjct: 425 LVEEGKLWFGRMVNHFKITPAEKHYV-----CLVDLLARSGLVEEASDLLTSMKAEPTVA 479

Query: 531 -WTSLMTG 537
            W +L++G
Sbjct: 480 IWVALLSG 487


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/636 (39%), Positives = 354/636 (55%), Gaps = 37/636 (5%)

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMT--GDVKVQGDGVSLVNALSACASLGTWSRGKQC-G 263
           WNT +   A+       L L+ +M   GD   + +  +   AL +CA+L     G Q  G
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGD---RPNAFTFPFALKSCAALSLPILGSQFHG 64

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT--WSAV 321
            + +   VFE      ++S       Y +    ++A    +K+ +EN     +T  ++A+
Sbjct: 65  QITKVGCVFEPFVQTGLISM------YCKGSLVDNA----RKVFEENFHSRKLTVCYNAL 114

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           ++GY       +A+ +FRQM   G+  N VTL+ L+  C S   L LG   HC T+K   
Sbjct: 115 VSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 174

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
                   D+ V+N  I MY KC SV+ A+ +FD +  K   + +W  M+  Y+QNG A 
Sbjct: 175 D------SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG--LISWNAMVSGYAQNGLAT 226

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           + L L+  M      V P+  TL   L +CA L A   G ++  + ++       PF+ N
Sbjct: 227 NVLELYRNMDMNG--VHPDPVTLVGVLSSCANLGAQSVGHEVE-FKMQASGFTSNPFLNN 283

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LI+MY+R G++  A+ VFD + +R +VSWT+++ GYGMHG G+ A   F +M + G+ P
Sbjct: 284 ALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP 343

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           DG  F+ +L ACSH+G+ DQGL+YF  M + + +    EHY+C+VDLLGRA RL EA  L
Sbjct: 344 DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL 403

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           IE MP++P   +W ALL  C+IH NVEL ELA  R++ELE E  G Y LLSNIY+NA   
Sbjct: 404 IESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNS 463

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
           K V RIR +MK   +KK PGCS+V+ K     F VGDR H QS +IY +L  L   I   
Sbjct: 464 KGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQE 523

Query: 742 GYVPQTSFALHDVDDEEKGDLLFE---HSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
              P+      D  +E   D       HSEKLA+A+G+L T  G  + I KNLRIC DCH
Sbjct: 524 FGKPEK-----DNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCH 578

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                +S I++ ++ +RD+ RFHHF+ GSC+CK YW
Sbjct: 579 LFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 227/517 (43%), Gaps = 76/517 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN  +R   +      A  L+ QM+R G  P+ +TFPF LK+C  L     GS  H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G     FV   L++MY +   +  AR++F+E F       V +N +V+ Y  +     
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL-TVCYNALVSGYVSNSKCSD 126

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            ++LF +M  +  V  + V+L+  + AC S      G                       
Sbjct: 127 AVLLFRQMNEE-GVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +CG +  A+K+F+ M VK ++SWNAMV+GY++ G   +   L++ M    V  + V
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           T                                   LV +LS CA++GA  +G E     
Sbjct: 246 T-----------------------------------LVGVLSSCANLGAQSVGHEVE--- 267

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
            K   S   S+P    + NALI+MYA+C ++  A+ +FD +    R + +WT +IG Y  
Sbjct: 268 FKMQASGFTSNP---FLNNALINMYARCGNLTKAQAVFDGMP--ERTLVSWTAIIGGYGM 322

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G    A+ LF +M +    ++P+     C L AC+       G +    + RN      
Sbjct: 323 HGHGEIAVQLFKEMIRSG--IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 380

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           P   +C++D+  R+G +  A+ + +++  + +   W +L+    +H   + A  AF+++ 
Sbjct: 381 PEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVI 440

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +  L P+ + + VLL     +    +G+     M KE
Sbjct: 441 E--LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKE 475



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 189/395 (47%), Gaps = 24/395 (6%)

Query: 44  LRQCKSLTQVYL---IHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPF 98
           L+ C +L+   L    H QI        P   + LI+ Y   +    A  + +    S  
Sbjct: 47  LKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRK 106

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
               +NAL+   V      +A  LF QM   G   +  T   ++ AC    +   GSS+H
Sbjct: 107 LTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLH 166

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 GFDS+V V N  + MY +C +++YA++LFDEM   G   ++SWN +V+ YAQ+G
Sbjct: 167 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG---LISWNAMVSGYAQNG 223

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            A   L L+  M  +  V  D V+LV  LS+CA+LG  S G +     +A          
Sbjct: 224 LATNVLELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGF-----TS 277

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +    NA++  Y+R G+   A A+F  M +      +V+W+A+I GY   GHG  A+ +F
Sbjct: 278 NPFLNNALINMYARCGNLTKAQAVFDGMPER----TLVSWTAIIGGYGMHGHGEIAVQLF 333

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++M   G+EP+    V +LS C+  G    G E +   +KR   ++   P+     + ++
Sbjct: 334 KEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE-YFKMMKRNYQLEPG-PEHY---SCMV 388

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           D+  +   +  A+ + +++ P   D A W  ++G+
Sbjct: 389 DLLGRAGRLKEAQTLIESM-PIKPDGAVWGALLGA 422


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/552 (40%), Positives = 335/552 (60%), Gaps = 19/552 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y++     DA  +F +M Q+NV    V+W+A+I+ Y+QRG   EAL++F +M    
Sbjct: 131 LIVLYNKCDCLGDAREMFDEMPQKNV----VSWTAMISAYSQRGFAFEALNLFVEMLRSD 186

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            EPN  T  ++L+ C        G++ H   IKR      ++   + V ++L+DMYAK  
Sbjct: 187 TEPNHFTFATILTSCYGSLGFETGRQIHSIAIKR------NYESHMFVGSSLLDMYAKSG 240

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +  A  +F  +    RDV   T +I  Y+Q G   +AL LF Q+  Q + +  N+ T +
Sbjct: 241 RICDAHGVFHCLP--ERDVVACTAIISGYAQMGLDEEALKLFRQL--QIEGMNSNSVTYA 296

Query: 466 CALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
             L A + LAAL  G+Q+H++VLR+ QY  ++  + N LIDMYS+ G++  AR +FD++ 
Sbjct: 297 SVLTALSGLAALNHGKQVHSHVLRSGQYSYVV--LLNSLIDMYSKCGNVCYARRIFDSMP 354

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGL 583
           +R  +SW +++ GY  HG+  +    F  MR+E  + PD +T+L +L  CSH  + D GL
Sbjct: 355 ERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGL 414

Query: 584 KYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           + F +M + + GI     HY C+VDLLGRA R++EA + I+ MP  PT  IW +LL  CR
Sbjct: 415 EIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCR 474

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H++VE+G +   +LLELE E  G+Y +LSN+YA+AG+W+D+  IR LM+   V K PG 
Sbjct: 475 VHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGR 534

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWV+  +   TF   D THP+ +++ + +  L  + K  GYVP  S  L+DVD+E+K  +
Sbjct: 535 SWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKV 594

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLALA+G++ T  GT IR+ KNLRIC DCHS   F+S +    +ILRD NRFH+
Sbjct: 595 LLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHN 654

Query: 823 FKEGSCTCKGYW 834
              G C+C  YW
Sbjct: 655 IVGGVCSCGDYW 666



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 215/426 (50%), Gaps = 34/426 (7%)

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
            LQM   G       +  +L  C    + R G  VH  +  + +  +V++   L+ +Y +
Sbjct: 78  LLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNK 137

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           CD L  AR++FDEM Q    ++VSW  +++AY+Q G A   L LF  M      + +  +
Sbjct: 138 CDCLGDAREMFDEMPQK---NVVSWTAMISAYSQRGFAFEALNLFVEMLRS-DTEPNHFT 193

Query: 243 LVNALSAC-ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
               L++C  SLG +  G+Q   +   +     M V      ++++  Y++ G   DA  
Sbjct: 194 FATILTSCYGSLG-FETGRQIHSIAIKRNYESHMFVG-----SSLLDMYAKSGRICDAHG 247

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  + +     +VV  +A+I+GYAQ G   EAL +FRQ+Q  G+  N VT  S+L+  +
Sbjct: 248 VFHCLPER----DVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 303

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            + AL  GK+ H + ++            ++++N+LIDMY+KC +V  AR +FD++    
Sbjct: 304 GLAALNHGKQVHSHVLR------SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP--E 355

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           R   +W  M+  YS++G A + L LF  M +++K VKP++ T    L  C+       G 
Sbjct: 356 RTCISWNAMLVGYSKHGMAREVLELFKLMREENK-VKPDSITYLAVLSGCSHGQLEDMGL 414

Query: 482 QIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS----WTSLM 535
           +I  Y + N  + + P + +  C++D+  R+G ++ A   FD +K+   V     W SL+
Sbjct: 415 EIF-YNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKMPFVPTAAIWGSLL 470

Query: 536 TGYGMH 541
               +H
Sbjct: 471 GSCRVH 476



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%), Gaps = 33/281 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I    +      A  LF++M+R    P+ +TF  +L +C        G  +H
Sbjct: 155 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 214

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           ++     ++S++FV ++L+ MYA+   +  A  +F  + +    D+V+   I++ YAQ G
Sbjct: 215 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER---DVVACTAIISGYAQMG 271

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             E  L LF ++  +  +  + V+  + L+A + L   + GKQ                 
Sbjct: 272 LDEEALKLFRQLQIE-GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL 330

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-V 311
                    CG +  A+++F+ M  +  +SWNAM+ GYS+ G   +   LFK MR+EN V
Sbjct: 331 NSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKV 390

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNV 350
           K + +T+ AV++G +        L++F  M     G+EP++
Sbjct: 391 KPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDI 431



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 8/204 (3%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
            A+I    ++ L + A +LF Q+   G + +  T+  VL A   L +   G  VH+ +  
Sbjct: 261 TAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLR 320

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           SG  S V + N+L+ MY++C  + YAR++FD M +      +SWN ++  Y++ G A   
Sbjct: 321 SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER---TCISWNAMLVGYSKHGMAREV 377

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM-MEEAKKVFERMKVKDVVS 282
           L LF  M  + KV+ D ++ +  LS C+       G +    M   K   E     D+  
Sbjct: 378 LELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIE----PDIGH 433

Query: 283 WNAMVTGYSRIGSFEDAFALFKKM 306
           +  +V    R G  E+AF   KKM
Sbjct: 434 YGCVVDLLGRAGRVEEAFDFIKKM 457


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/662 (36%), Positives = 372/662 (56%), Gaps = 25/662 (3%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N L+  Y +C ++ YAR++FDE+       IV+WN+++A+Y ++G ++  + ++ RM  D
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHR---HIVAWNSMIASYIRNGRSKEAIDIYQRMVPD 170

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
             +  D  +  +   A + LG    G++       + V   + V +V   +A+V  Y++ 
Sbjct: 171 -GILPDEFTFSSVFKAFSDLGLVHEGQRA----HGQSVVLGVGVSNVFVGSALVDMYAKF 225

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   DA    + +  + V  +VV ++A+I GY+  G   E+L VFR M   G+E N  TL
Sbjct: 226 GKMRDA----RLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTL 281

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L  C ++  L  G+  H   +K  L         +    +L+ MY +C  VD +  +
Sbjct: 282 SSVLVCCGNLEDLTSGRLIHGLIVKAGL------ESAVASQTSLLTMYYRCGLVDDSLKV 335

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F      N+   TWT +I    QNG    AL  F QM +    + PN+FTLS  L AC+ 
Sbjct: 336 FKQFINPNQ--VTWTSVIVGLVQNGREEIALLKFRQMLRSS--ITPNSFTLSSVLRACSS 391

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           LA L  G+QIHA V++   + +  +V   LID Y + G  + AR VF+ L + +VVS  S
Sbjct: 392 LAMLEQGKQIHAIVMKFGLD-IDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNS 450

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++  Y  +G G +A   F  M+  GL P+ VT+L +L AC+++G++++G   F S     
Sbjct: 451 MIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSG 510

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            I    +HYAC+VDLLGRA RL EA  LI  + +    +IW  LL+ CRIH +VE+ +  
Sbjct: 511 NIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDV-VIWRTLLSACRIHGDVEMAKRV 569

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
            NR+++L  E  G++ LLSN+YA+ G W  V  ++S M+   +KK P  SWV  +    T
Sbjct: 570 MNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHT 629

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  GD +HP  + I E L  L++++K +GYVP T F L D+D+E+K   L+ HSEKLA+A
Sbjct: 630 FMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVA 689

Query: 774 YGI-LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           + +  +    T IRI KNLR+CGDCH+ + F+S I+  +II RD  RFHHF+ G C+C  
Sbjct: 690 FALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGD 749

Query: 833 YW 834
           YW
Sbjct: 750 YW 751



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 168/563 (29%), Positives = 270/563 (47%), Gaps = 41/563 (7%)

Query: 24  TNIKLFSVTTTPCIKITSL---LLRQC---KSLTQVYLIHQQIIVQNLTHVPPSHLIAAY 77
           +NIK+  +  T  I+ T L   L++QC   KS+T +  I    + +   H   + LI AY
Sbjct: 61  SNIKIRKLCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSLGNKLIDAY 120

Query: 78  VSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT 137
           +   +   A  +   +      +  WN++I   +R      A  ++ +M+  G  PDE+T
Sbjct: 121 LKCGSVVYARKVFDEVPHR--HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFT 178

Query: 138 FPFVLKACGELPSSRCGSSVH--AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           F  V KA  +L     G   H  +V+   G  SNVFV +AL+ MYA+   +  AR + D+
Sbjct: 179 FSSVFKAFSDLGLVHEGQRAHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRDARLVSDQ 237

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           +      D+V +  ++  Y+  G+    L +F  MT    ++ +  +L + L  C +L  
Sbjct: 238 VVGK---DVVLFTALIVGYSHHGEDGESLQVFRNMTKK-GIEANEYTLSSVLVCCGNLED 293

Query: 256 WSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
            + G+   G++ +A    E      V S  +++T Y R G  +D+  +FK+     +  N
Sbjct: 294 LTSGRLIHGLIVKAG--LESA----VASQTSLLTMYYRCGLVDDSLKVFKQF----INPN 343

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            VTW++VI G  Q G    AL  FRQM    + PN  TL S+L  C+S+  L  GK+ H 
Sbjct: 344 QVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHA 403

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
             +K  L +D        V  ALID Y KC S ++AR +F+ +     DV +   MI SY
Sbjct: 404 IVMKFGLDIDK------YVGAALIDFYGKCGSTEIARSVFNGLLEV--DVVSVNSMIYSY 455

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           +QNG  ++AL LF  M  +D  ++PN  T    L AC     L  G  I +    +    
Sbjct: 456 AQNGFGHEALQLFSGM--KDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIE 513

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           L      C++D+  R+G +  A ++ + +   +VV W +L++   +HG  + A    +  
Sbjct: 514 LTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMN-- 571

Query: 555 RKEGLAP-DGVTFLVL--LYACS 574
           R   LAP DG T ++L  LYA +
Sbjct: 572 RVIDLAPEDGGTHVLLSNLYAST 594



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 7/192 (3%)

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           + N LID Y + G +  AR VFD +  R++V+W S++  Y  +G   +A   + +M  +G
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLK-YFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           + PD  TF  +  A S  G+V +G + +  S+    G+S      A +VD+  +  ++ +
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSA-LVDMYAKFGKMRD 230

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGE-LAANRLLELESEKDGSYTLLSNIYA 676
           A  L+    +    +++ AL+ G   H   E GE L   R +  +  +   YT LS++  
Sbjct: 231 A-RLVSDQVVGKDVVLFTALIVGYSHHG--EDGESLQVFRNMTKKGIEANEYT-LSSVLV 286

Query: 677 NAGRWKDVARIR 688
             G  +D+   R
Sbjct: 287 CCGNLEDLTSGR 298


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/645 (38%), Positives = 364/645 (56%), Gaps = 36/645 (5%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVP-----PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFW 102
           +SL +  ++H   I   L H P     PSHL  +Y        A  L   +S    S+F 
Sbjct: 93  RSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDP--SLFL 150

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           WNA+I+  V      +A R+F  M+  G  W PD+YTFP V+KAC  +     G  +H  
Sbjct: 151 WNAIIKMYVDKGFHFDALRVFDSMICSGKCW-PDKYTFPLVIKACSVMSMLNVGVLIHGR 209

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
              SGF SN+FV N+L+AMY  C  +  ARQ+F+ M +  +   VSWNT+++ + Q+G  
Sbjct: 210 ALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSV---VSWNTMISGWFQNGRP 266

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
           E  L +F  M  D +V+ D  ++V+AL +C  L     G +   + +   + E+++V+  
Sbjct: 267 EEALAVFNSMM-DARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVR-- 323

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              NA+V  YSR G  ++A  +F + ++++V    +TW+++I GY   G+   AL +   
Sbjct: 324 ---NALVDMYSRCGGMDEASLVFAETKEKDV----ITWTSMINGYIMNGNAKSALALCPA 376

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           MQ  G+ PN VTL SLLS CAS+  L  GK  H + +++ L        D++V+ ALIDM
Sbjct: 377 MQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLD------SDVLVVTALIDM 430

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAKC +V  +  +F   + K      W  ++     N  A +A+ LF  M  ++  V+ N
Sbjct: 431 YAKCNAVSYSFQVFAKTSMKR--TVPWNALLSGLIHNELAREAVGLFKSMLIEE--VEAN 486

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T +  + A A LA L+    +H+Y++R+ +   I  +   LIDMYS+ G +D A  +F
Sbjct: 487 HATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITG-LIDMYSKCGSLDYAHKIF 545

Query: 521 DNL--KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           D +  K+++++ W+ L+ GYGMHG G+ A   F+QM   G+ P+ +TF  +L+ACSH G+
Sbjct: 546 DEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGL 605

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           VD GL  F  M + +  S    HY C+VDLLGRA RLDEA +LI+ MP +    IW ALL
Sbjct: 606 VDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALL 665

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
             C IH NVELGE+AA RL ELE E  G+Y LL+NIYA  GRWKD
Sbjct: 666 GACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKD 710



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 240/581 (41%), Gaps = 116/581 (19%)

Query: 145 CGELPSSRCGS-SVHAVICSSGFDSNVFVCNALMAMYAR--------------------- 182
           CG+  ++   S +  A+  S    +NV  C++L+  YA                      
Sbjct: 53  CGDFRNNLSNSNTTKALSKSKSLIANVHRCDSLLCHYAATRSLNKTKILHGHTITSGLLH 112

Query: 183 -----------------CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
                            C  +  AR+LFD++  P    +  WN I+  Y   G     L 
Sbjct: 113 SPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPS---LFLWNAIIKMYVDKGFHFDALR 169

Query: 226 LFARMTGDVKVQGDGVSLVNALSACA-----SLGTWSRGK-------------------- 260
           +F  M    K   D  +    + AC+     ++G    G+                    
Sbjct: 170 VFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMY 229

Query: 261 -QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             CG +  A++VF  M  + VVSWN M++G+ + G  E+A A+F  M    V        
Sbjct: 230 MNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARV-------- 281

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
                                      EP+  T+VS L  C  +  L LG + H    K 
Sbjct: 282 ---------------------------EPDSATIVSALPSCGHLKELELGIKVHKLVQKN 314

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L       + + V NAL+DMY++C  +D A ++F     K +DV TWT MI  Y  NG 
Sbjct: 315 HLQ------EKIEVRNALVDMYSRCGGMDEASLVF--AETKEKDVITWTSMINGYIMNGN 366

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           A  ALAL P M Q D +V PNA TL+  L ACA L  L+ G+ +HA+V+R + +  +  V
Sbjct: 367 AKSALALCPAM-QLDGVV-PNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDV-LV 423

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
              LIDMY++   +  +  VF     +  V W +L++G   + L  +A   F  M  E +
Sbjct: 424 VTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEV 483

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
             +  TF  ++ A +    + Q +     + +  G  ++      ++D+  +   LD A 
Sbjct: 484 EANHATFNSVIPAYAILADLKQVMNLHSYLVRS-GFISKIAVITGLIDMYSKCGSLDYAH 542

Query: 620 ELIEGMP-MEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           ++ + +P  E   I+W  L+ G  +H + E   L  N+++ 
Sbjct: 543 KIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVH 583


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/597 (38%), Positives = 339/597 (56%), Gaps = 43/597 (7%)

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR-QENVKLNVVTWSAVIAGYA 326
           A+ VF+ +   D   WN M+  Y    + +++ +LF +MR QE + ++  + S VI    
Sbjct: 57  ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           +         +  Q+   GL  ++    +L+   A  G +          I R +  + +
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDI---------EIARNILDEMA 167

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------------------- 421
           HPD L+  N L+  Y +   +++A  +FD +  ++                         
Sbjct: 168 HPD-LVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFD 226

Query: 422 ----RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               RD+ +W+ MI +Y++   +N+AL LF +M  Q   V P+  T+   L AC  + AL
Sbjct: 227 RTCERDLISWSSMIAAYAKARQSNEALRLFHEM--QLANVLPDKVTMVSVLSACGDVGAL 284

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G+ IH  + RN+ E+ +  +   L+DMY++ GDID +  VF+ +  R+V +W++++ G
Sbjct: 285 GMGKMIHECIERNRIEIDLK-LGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMG 343

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
              HG G+ A   F +M  E + P+ VTF+ +L ACSH G+VD+G  YF SMSK + +S 
Sbjct: 344 LANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSP 403

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
           + EHY C+VD+LGRA RL EA+ELI+ MP  P  I+W ALL  CRI+ NVE+ E A   L
Sbjct: 404 KIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNL 463

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           LELE   DG+Y LLSNIY+ A  W  V  +R +MK+  ++K PG S ++       F  G
Sbjct: 464 LELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAG 523

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D++HP+S+KI  +L+ +  R+KA GY P T+  L D D++EK + L  HSEKLA+A+G+L
Sbjct: 524 DQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLL 583

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +TAPG+ IRI KNLR+C DCH AI  IS      II+RD NRFHHF  GSC+CK YW
Sbjct: 584 STAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 144/503 (28%), Positives = 226/503 (44%), Gaps = 77/503 (15%)

Query: 43  LLRQCKSLTQVYLIHQQIIV-----QNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           LL+    L Q+  IH  II       N         + A  S N    A S+   I PSP
Sbjct: 9   LLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEI-PSP 67

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGELPSSRCGSS 156
              F WN +IR  +  + P  +  LF QM  +   P D Y+   V++ACG L     G  
Sbjct: 68  -DTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQK 126

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  +   G  S++FV  AL+ MYA+   +  AR + DEM  P   D+V +N ++A Y +
Sbjct: 127 LHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHP---DLVPYNVLLAEYVR 183

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G+      LF RM      + D VS    +   ASLG          +  AKK+F+R  
Sbjct: 184 VGEINLAHDLFDRMP-----ERDLVSWNTMIHGHASLGD---------VGTAKKLFDRTC 229

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            +D++SW++M+  Y++     +A  LF +M+  NV                         
Sbjct: 230 ERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVL------------------------ 265

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH-CYTIKRVLSVDGSHPDDLMVIN 395
                      P+ VT+VS+LS C  VGAL +GK  H C    R+         DL +  
Sbjct: 266 -----------PDKVTMVSVLSACGDVGALGMGKMIHECIERNRI-------EIDLKLGT 307

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +L+DMYAKC  +D +  +F+ +   NRDV  W+ MI   + +G    AL  F +M  +D 
Sbjct: 308 SLVDMYAKCGDIDNSLRVFNGM--NNRDVFAWSAMIMGLANHGFGELALDHFSKMISED- 364

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDI 513
            +KPN  T    L AC+ +  +  G   +   +   Y+ + P + +  C++D+  R+G +
Sbjct: 365 -IKPNDVTFIGVLSACSHIGLVDEG-WTYFTSMSKVYD-VSPKIEHYGCVVDILGRAGRL 421

Query: 514 DTARVVFDNLK-QRNVVSWTSLM 535
             A  +  ++    + + W +L+
Sbjct: 422 QEAMELIKSMPFAPDAIVWRALL 444


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 358/622 (57%), Gaps = 30/622 (4%)

Query: 217 SGDAEGGLMLFARMTGDVKVQG-DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           SG  +  L+  A +  +VK +G D +     L+ C S      G++         + +  
Sbjct: 43  SGQLKEALLQMAILGREVKFEGYDSI-----LNECVSQRAIREGQRV-----HTHMIKTC 92

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
            +  V     ++  Y++     DA  +F +M Q NV    V+W+A+I+ Y+QRG   EAL
Sbjct: 93  YLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNV----VSWTAMISAYSQRGFAFEAL 148

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           ++F +M     EPN  T  ++L+ C        G++ H   IKR      ++   + V +
Sbjct: 149 NLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKR------NYESHMFVGS 202

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +L+DMYAK   +  A  +F  +    RDV   T +I  Y+Q G   +AL LF Q+  Q +
Sbjct: 203 SLLDMYAKSGRICDAHGVFHCLP--ERDVVACTAIISGYAQMGLDEEALKLFRQL--QIE 258

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDID 514
            +  N+ T +  L A + LAAL  G+Q+H++VLR+ QY  ++  + N LIDMYS+ G++ 
Sbjct: 259 GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVV--LLNSLIDMYSKCGNVC 316

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYAC 573
            AR +FD++ +R  +SW +++ GY  HG+  +    F  MR+E  + PD +T+L +L  C
Sbjct: 317 YARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGC 376

Query: 574 SHSGMVDQGLKYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           SH  + D GL+ F +M + + GI     HY C+VDLLGRA R++EA + I+ MP  PT  
Sbjct: 377 SHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAA 436

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           IW +LL  CR+H++VE+G +   +LLELE E  G+Y +LSN+YA+AG+W+D+  IR LM+
Sbjct: 437 IWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQ 496

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
              V K PG SWV+  +   TF   D THP+ +++   +  L  + K  GYVP  S  L+
Sbjct: 497 EKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLY 556

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           DVD+E+K  +L  HSEKLALA+G++ T  GT IR+ KNLRIC DCHS   F+S +    +
Sbjct: 557 DVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTV 616

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           ILRD NRFH+   G C+C  YW
Sbjct: 617 ILRDKNRFHNIVGGVCSCGDYW 638



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 214/426 (50%), Gaps = 34/426 (7%)

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
            LQM   G       +  +L  C    + R G  VH  +  + +  +V++   L+ +Y +
Sbjct: 50  LLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNK 109

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           CD L  AR +FDEM Q    ++VSW  +++AY+Q G A   L LF  M      + +  +
Sbjct: 110 CDCLGDARGMFDEMPQR---NVVSWTAMISAYSQRGFAFEALNLFVEMLRS-DTEPNHFT 165

Query: 243 LVNALSAC-ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
               L++C  SLG +  G+Q   +   +     M V      ++++  Y++ G   DA  
Sbjct: 166 FATILTSCYGSLG-FETGRQIHSIAIKRNYESHMFVG-----SSLLDMYAKSGRICDAHG 219

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  + +     +VV  +A+I+GYAQ G   EAL +FRQ+Q  G+  N VT  S+L+  +
Sbjct: 220 VFHCLPER----DVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 275

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            + AL  GK+ H + ++            ++++N+LIDMY+KC +V  AR +FD++    
Sbjct: 276 GLAALNHGKQVHSHVLR------SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP--E 327

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           R   +W  M+  YS++G A + L LF  M +++K VKP++ T    L  C+       G 
Sbjct: 328 RTCISWNAMLVGYSKHGMAREVLELFKLMREENK-VKPDSITYLAVLSGCSHGQLEDMGL 386

Query: 482 QIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS----WTSLM 535
           +I  Y + N  + + P + +  C++D+  R+G ++ A   FD +K+   V     W SL+
Sbjct: 387 EIF-YNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKMPFVPTAAIWGSLL 442

Query: 536 TGYGMH 541
               +H
Sbjct: 443 GSCRVH 448



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%), Gaps = 33/281 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A+I    +      A  LF++M+R    P+ +TF  +L +C        G  +H
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 186

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           ++     ++S++FV ++L+ MYA+   +  A  +F  + +    D+V+   I++ YAQ G
Sbjct: 187 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER---DVVACTAIISGYAQMG 243

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
             E  L LF ++  +  +  + V+  + L+A + L   + GKQ                 
Sbjct: 244 LDEEALKLFRQLQIE-GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL 302

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-V 311
                    CG +  A+++F+ M  +  +SWNAM+ GYS+ G   +   LFK MR+EN V
Sbjct: 303 NSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKV 362

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNV 350
           K + +T+ AV++G +        L++F  M     G+EP++
Sbjct: 363 KPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDI 403



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 8/204 (3%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
            A+I    ++ L + A +LF Q+   G + +  T+  VL A   L +   G  VH+ +  
Sbjct: 233 TAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLR 292

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           SG  S V + N+L+ MY++C  + YAR++FD M +      +SWN ++  Y++ G A   
Sbjct: 293 SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER---TCISWNAMLVGYSKHGMAREV 349

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM-MEEAKKVFERMKVKDVVS 282
           L LF  M  + KV+ D ++ +  LS C+       G +    M   K   E     D+  
Sbjct: 350 LELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIE----PDIGH 405

Query: 283 WNAMVTGYSRIGSFEDAFALFKKM 306
           +  +V    R G  E+AF   KKM
Sbjct: 406 YGCVVDLLGRAGRVEEAFDFIKKM 429


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/521 (42%), Positives = 314/521 (60%), Gaps = 10/521 (1%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + V+W+A+IA Y   GH  EA+ V R+    G+ P+  T V +L+ CA V  L  G+   
Sbjct: 5   STVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGE--- 61

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +      +    + + V  A +D+Y KC  ++ AR +FD +  KNRD   W  M+G 
Sbjct: 62  --AVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEM--KNRDAVAWGAMVGG 117

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+ NG   +AL LF  M  Q +  KP+ +T+  AL AC RL AL  GRQ    V  ++  
Sbjct: 118 YASNGHPREALDLFFAM--QMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEV- 174

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           +  P +   LIDMY++ G    A +VF  + +R+++ W +++ G GM G    A     Q
Sbjct: 175 LGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQ 234

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M+K G+  +  TF+ LL +C+H+G+V+ G +YF +M+  + IS R EHY C+VDL  RA 
Sbjct: 235 MKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAG 294

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            L+EA +LI  MPM    ++W ALL GC+IH N +L E A  +L+ LE    G+Y +LSN
Sbjct: 295 LLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSN 354

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IY+N+GRW+D A++R  MK  G++K P  SWV+       F+VGD +HP S KIY  L  
Sbjct: 355 IYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDE 414

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           L   +KAMGY P T   + DV++EEK + L  HSEK+A+A+ ++TT PG  IR+TKNLR+
Sbjct: 415 LGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRV 474

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCHSAI  IS I   EI++RD+NRFH F++G C+C  YW
Sbjct: 475 CTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 31/377 (8%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P P +V W  ALI   +       A  +  +    G  PD +T   VL AC  +     G
Sbjct: 2   PHPSTVSW-TALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 155 SSVHAVI-CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
            +V A      G   +VFV  A + +Y +C  +  AR +FDEM      D V+W  +V  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNR---DAVAWGAMVGG 117

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           YA +G     L LF  M  +   + D  ++V ALSAC  LG    G+Q   M    +V  
Sbjct: 118 YASNGHPREALDLFFAMQME-GAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVL- 175

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                + V   A++  Y++ GS  +A+ +F++M    ++ +++ W+A+I G    GH   
Sbjct: 176 ----GNPVLGTALIDMYAKCGSTSEAWMVFQQM----LERDIIVWNAMILGLGMTGHEKI 227

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE-----THCYTIKRVLSVDGSHP 388
           A  +  QM+  G++ N  T + LL  C   G +  G++     TH Y I   +   G   
Sbjct: 228 AFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYG--- 284

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
                   ++D++++   ++ A  +   + P   +   W  ++G    +  A+ A     
Sbjct: 285 -------CMVDLFSRAGLLEEAHQLIGDM-PMLANAVVWGALLGGCKIHRNADLAEHALK 336

Query: 449 QMFQQDKLVKPNAFTLS 465
           Q+ + +     N   LS
Sbjct: 337 QLIRLEPWNSGNYVMLS 353


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/491 (42%), Positives = 307/491 (62%), Gaps = 15/491 (3%)

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS- 406
           PN  T   +L  CA +G L LGK  H   +K          D++ V N L+ MY  C+  
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFG------DEVNVQNTLVHMYCCCRGG 61

Query: 407 ---VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
              ++ AR +FD +     D  +W+ MIG Y + G ++DA+ LF +M  Q K V P+  T
Sbjct: 62  EGGIEFARKVFDEMYKS--DSVSWSAMIGGYVRVGRSSDAINLFREM--QIKGVCPDEIT 117

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           +   L AC  L AL  G+ + +YV + + +  +  ++N LIDM+++ GD+D A  +F ++
Sbjct: 118 MVSVLSACTGLGALELGKWVESYVEKERVQKNVE-LSNALIDMFAKCGDVDKATNLFRSM 176

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           ++RN+VSWTS++ G  MHG G +A   F++M + G+ PD V F+ LL ACSHSG+VD+G 
Sbjct: 177 RERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGK 236

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YFDSM K+F I  + EHY C+VD+L RA  + EA++ ++ MP++P P++W  L+N CR 
Sbjct: 237 RYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRA 296

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H  ++LGE    +L+  E   + +Y LLSNIYA    W+   RIR  M   G+KK PG +
Sbjct: 297 HGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGST 356

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
            ++       F  GD++H QS++IYE++  + + +K  GY+P T+  L D+DDE+K D L
Sbjct: 357 MIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTL 416

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+A+ +L T PGT IRI KNLR+C DCHSA  FIS I N EI++RD NRFHHF
Sbjct: 417 NRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHF 476

Query: 824 KEGSCTCKGYW 834
           K G C+C+ +W
Sbjct: 477 KNGLCSCRDFW 487



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 172/373 (46%), Gaps = 66/373 (17%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC-- 183
           M+ R   P+++T+PFVLKAC  + +   G SVH  +   GF   V V N L+ MY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 184 --DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG--- 238
               + +AR++FDEM++    D VSW+ ++  Y + G +   + LF  M    +++G   
Sbjct: 61  GEGGIEFARKVFDEMYKS---DSVSWSAMIGGYVRVGRSSDAINLFREM----QIKGVCP 113

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D +++V+ LSAC  LG    GK      E ++V      K+V   NA++  +++ G  + 
Sbjct: 114 DEITMVSVLSACTGLGALELGKWVESYVEKERV-----QKNVELSNALIDMFAKCGDVDK 168

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF+ MR+     N+V+W++VI G A  G G EA+ VF +M   G+ P+ V  + LLS
Sbjct: 169 ATNLFRSMRER----NIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLS 224

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C+  G +  GK                                  +  D  R  F +I 
Sbjct: 225 ACSHSGLVDKGK----------------------------------RYFDSMRKDF-SIV 249

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
           PK   +  +  M+    + G   +AL      F Q+  + PN       + AC     L+
Sbjct: 250 PK---IEHYGCMVDMLCRAGLVKEALK-----FVQEMPIDPNPVVWRTLINACRAHGELK 301

Query: 479 FGRQIHAYVLRNQ 491
            G +I   ++RN+
Sbjct: 302 LGEKITRQLIRNE 314



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 163/332 (49%), Gaps = 25/332 (7%)

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L ACA +G  + GK          V +     +V   N +V  Y      E      +K+
Sbjct: 17  LKACAGIGNLNLGKSV-----HGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKV 71

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             E  K + V+WSA+I GY + G   +A+++FR+MQ  G+ P+ +T+VS+LS C  +GAL
Sbjct: 72  FDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGAL 131

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LGK    Y  K  +        ++ + NALIDM+AKC  VD A  +F ++  + R++ +
Sbjct: 132 ELGKWVESYVEKERVQ------KNVELSNALIDMFAKCGDVDKATNLFRSM--RERNIVS 183

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT +IG  + +G   +A+A+F +M +    V P+       L AC+    +  G++ +  
Sbjct: 184 WTSVIGGLAMHGRGVEAVAVFEEMVRSG--VTPDDVVFIGLLSACSHSGLVDKGKR-YFD 240

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTGYGMHG- 542
            +R  +  ++P + +  C++DM  R+G +  A + V +     N V W +L+     HG 
Sbjct: 241 SMRKDFS-IVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGE 299

Query: 543 --LGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             LG+K       +R E +       L  +YA
Sbjct: 300 LKLGEKITRQL--IRNEPMHESNYVLLSNIYA 329



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 23/251 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   VR+    +A  LF +M  +G  PDE T   VL AC  L +   G  V + + 
Sbjct: 83  WSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVE 142

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                 NV + NAL+ M+A+C  +  A  LF  M +    +IVSW +++   A  G    
Sbjct: 143 KERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER---NIVSWTSVIGGLAMHGRGVE 199

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
            + +F  M     V  D V  +  LSAC+           G++++ K+ F+ M+     V
Sbjct: 200 AVAVFEEMVRS-GVTPDDVVFIGLLSACS---------HSGLVDKGKRYFDSMRKDFSIV 249

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +  +  MV    R G  ++A    ++M    +  N V W  +I   A R HG   L  
Sbjct: 250 PKIEHYGCMVDMLCRAGLVKEALKFVQEM---PIDPNPVVWRTLIN--ACRAHGELKLGE 304

Query: 338 FRQMQFCGLEP 348
               Q    EP
Sbjct: 305 KITRQLIRNEP 315


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/526 (42%), Positives = 324/526 (61%), Gaps = 17/526 (3%)

Query: 314 NVVTWSAVIAGYAQRGH----GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           +VV ++ ++ GYA+ G       EA  VF +M   G+ P+  T VSLL  CAS  A   G
Sbjct: 98  DVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           ++ H   +K          +   V   LI+MYA+C  V  ARVMFD +      V ++  
Sbjct: 158 RQAHGVAVK------AGAAEHEYVAPTLINMYAECGDVRAARVMFDRM--DGECVVSYNA 209

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI +  ++    +AL LF +M  Q K +KP + TL   L ACA L AL  GR IH Y+ +
Sbjct: 210 MITASVRSSLPGEALVLFREM--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
            + + L+  V   LIDMY++ G ++ A  VF +++ R+  +W+ +M  Y  HG G +A  
Sbjct: 268 MRLDSLVK-VNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAIS 326

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            F++M+K+G+ PD VTFL +LYACSHSGMV +GL+YFDSM +E+GI +  +HY C+ DLL
Sbjct: 327 MFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLL 385

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
            R+ +L+ A + I+ +P++PT I+W  LL+ C  H +V++G+    R+LEL+    G Y 
Sbjct: 386 ARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYV 445

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           + SN+ AN GRW+++  +R LM   GV K PGCS ++       FF GD +HP SQ+   
Sbjct: 446 IFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARR 505

Query: 730 ILAGLVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           ++  +++++K +GYVP TS   H ++ +EEK   L  HSEKLA+++G+L TAPGT +RI 
Sbjct: 506 MVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIV 565

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+C DCHS    +SM+ N  IILRD NRFHHF++G C+C  YW
Sbjct: 566 KNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 27/374 (7%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRL----PDNAFRLFLQMMRRGWHPDEYTFPFV 141
           A  +  RI P P  V W+N L+R   R        + A R+F++MM  G  PD YTF  +
Sbjct: 86  ARQVFDRI-PHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSL 144

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LKAC    +   G   H V   +G   + +V   L+ MYA C  +  AR +FD M   G 
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM--DGE 202

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
           C +VS+N ++ A  +S      L+LF  M     ++   V+L++ LSACA LG    G+ 
Sbjct: 203 C-VVSYNAMITASVRSSLPGEALVLFREMQAK-GLKPTSVTLISVLSACALLGALELGRW 260

Query: 262 CGMMEEAKKVFERMKVKDVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                       +M++  +V  N A++  Y++ GS EDA  +F+ M   + +     WS 
Sbjct: 261 I------HDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQ----AWSV 310

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           ++  YA  G+G EA+ +F +M+  G++P+ VT + +L  C+  G +  G + +  +++  
Sbjct: 311 MMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQ-YFDSMREY 369

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             V G     +     + D+ A+   ++ A    D + P       W  ++ + + +G  
Sbjct: 370 GIVSG-----IKHYGCVTDLLARSGQLERAYKFIDEL-PIKPTAILWRTLLSACAGHGDV 423

Query: 441 NDALALFPQMFQQD 454
           +    +F ++ + D
Sbjct: 424 DMGKRVFERILELD 437



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 189/403 (46%), Gaps = 86/403 (21%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD----AEGGLMLFARMTGDVKVQGDGV 241
           L+YARQ+FD +  PG  D+V +NT++  YA+ G     AE    +F RM  +  V  D  
Sbjct: 83  LAYARQVFDRIPHPG--DVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEE-GVAPDTY 139

Query: 242 SLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERM 275
           + V+ L ACAS      G+Q                          CG +  A+ +F+RM
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM 199

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             + VVS+NAM+T   R     +A  LF++M+ +                          
Sbjct: 200 DGECVVSYNAMITASVRSSLPGEALVLFREMQAK-------------------------- 233

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
                    GL+P  VTL+S+LS CA +GAL LG+  H Y  K  L       D L+ +N
Sbjct: 234 ---------GLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL-------DSLVKVN 277

Query: 396 -ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            ALIDMYAKC S++ A  +F  +  ++RD   W+VM+ +Y+ +G   +A+++F +M +Q 
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQG 335

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
             +KP+  T    L AC+    +  G Q   Y    +   ++  + +  C+ D+ +RSG 
Sbjct: 336 --MKPDDVTFLGVLYACSHSGMVSEGLQ---YFDSMREYGIVSGIKHYGCVTDLLARSGQ 390

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           ++ A    D L  +   + W +L++    HG  D     F+++
Sbjct: 391 LERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERI 433



 Score = 47.4 bits (111), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 15/165 (9%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            A  +F +M ++G  PD+ TF  VL AC        G      +   G  S +     + 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-DVKV 236
            + AR   L  A +  DE+  P     + W T+++A A  GD + G  +F R+   D   
Sbjct: 383 DLLARSGQLERAYKFIDEL--PIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSH 440

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
            GD V   N    CA+ G W         EE   V + M  K VV
Sbjct: 441 GGDYVIFSN---LCANTGRW---------EEMNMVRKLMSEKGVV 473


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/699 (35%), Positives = 376/699 (53%), Gaps = 91/699 (13%)

Query: 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLF 227
           ++ F+ N L+ +YA+   L  A+ LFD+M +    D  SWN +++AYA+SG  +     F
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKR---DXFSWNALLSAYAKSGSIQNLKATF 112

Query: 228 ARM---------------TGDV----------KVQGDGV-----SLVNALSACASLGTWS 257
            RM               +G+           ++Q +G      ++V+ L+A A L    
Sbjct: 113 DRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLR 172

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
            GKQ         +  R  + +V  WNA+   Y++ G  E A  LF  +     K N+V+
Sbjct: 173 YGKQI-----HGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCL----TKKNLVS 223

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+ +I+GYA+ G   + + +  QM+  G                                
Sbjct: 224 WNLMISGYAKNGQPEKCIGLLHQMRLSG-------------------------------- 251

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
                    H  D + ++ +I  Y +C  VD AR +F     K +D+  WT M+  Y++N
Sbjct: 252 ---------HMPDQVTMSTIIAAYCQCGRVDEARRVFSEF--KEKDIVCWTAMMVGYAKN 300

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY-VLRNQYEMLI 496
           G   DAL LF +M  +   ++P+++TLS  + +CA+LA+L  G+ +H   +L      L+
Sbjct: 301 GREEDALLLFNEMLLEH--IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLL 358

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             V++ LIDMYS+ G ID AR VF+ +  RNVVSW +++ G   +G    A   F+ M +
Sbjct: 359 --VSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
           +   PD VTF+ +L AC H   ++QG +YFDS+S + G++   +HYAC+V+LLGR  R++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           +AV LI+ M  +P  +IW  LL+ C    ++   E+AA  L EL+      Y +LSN+YA
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYA 536

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
           + GRWKDVA +R+LMK   VKK  G SW++       F   DRTHP+S+ IYE L  L+ 
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIG 596

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG-TPIRITKNLRICG 795
           +++  G+ P T+  LHDV ++EK   +  HSEKLALA+G++    G +PIRI KN+RIC 
Sbjct: 597 KLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICN 656

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH  + F S II  +IILRDSNRFHHF  G C+C   W
Sbjct: 657 DCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 213/426 (50%), Gaps = 67/426 (15%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           P  +  LF +M R G+ P EYT   +L A  +L   R G  +H  I    F  NVF+ NA
Sbjct: 136 PQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNA 195

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG--GLMLFARMTGD 233
           L  MYA+C  +  AR LFD + +    ++VSWN +++ YA++G  E   GL+   R++G 
Sbjct: 196 LTDMYAKCGEIEQARWLFDCLTKK---NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGH 252

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           +    D V++   ++A           QCG ++EA++VF   K KD+V W AM+ GY++ 
Sbjct: 253 MP---DQVTMSTIIAAYC---------QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKN 300

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  EDA  LF +M  E++                                   EP+  TL
Sbjct: 301 GREEDALLLFNEMLLEHI-----------------------------------EPDSYTL 325

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S++S CA + +L  G+  H  +I   L+      ++L+V +ALIDMY+KC  +D AR +
Sbjct: 326 SSVVSSCAKLASLHHGQAVHGKSILAGLN------NNLLVSSALIDMYSKCGFIDDARSV 379

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +  +N  V +W  MI   +QNG   DAL LF  M QQ    KP+  T    L AC  
Sbjct: 380 FNLMPTRN--VVSWNAMIVGCAQNGHDKDALELFENMLQQK--FKPDNVTFIGILSACLH 435

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVS 530
              +  G++    +  NQ+ M  P + +  C++++  R+G I+ A  +  N+    + + 
Sbjct: 436 CNWIEQGQEYFDSI-SNQHGM-TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLI 493

Query: 531 WTSLMT 536
           W++L++
Sbjct: 494 WSTLLS 499



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 32/235 (13%)

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            P D  + N L+ +YAK   +  A+ +FD +    RD  +W  ++ +Y+++G   +  A 
Sbjct: 54  QPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLK--RDXFSWNALLSAYAKSGSIQNLKAT 111

Query: 447 FPQMFQQDKL-----------------------------VKPNAFTLSCALMACARLAAL 477
           F +M  +D +                              +P  +T+   L A A+L  L
Sbjct: 112 FDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDL 171

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           R+G+QIH  ++   +   + F+ N L DMY++ G+I+ AR +FD L ++N+VSW  +++G
Sbjct: 172 RYGKQIHGSIIVRNFLGNV-FIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISG 230

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           Y  +G  +K      QMR  G  PD VT   ++ A    G VD+  + F    ++
Sbjct: 231 YAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK 285



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 55  LIHQQIIVQNL-THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           L+HQ  +  ++   V  S +IAAY        A  +          +  W A++    + 
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK--DIVCWTAMMVGYAKN 300

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
              ++A  LF +M+     PD YT   V+ +C +L S   G +VH     +G ++N+ V 
Sbjct: 301 GREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS 360

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           +AL+ MY++C  +  AR +F+ M      ++VSWN ++   AQ+G  +  L LF  M   
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLM---PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVT 288
            K + D V+ +  LSAC           C  +E+ ++ F+ +  +  ++     +  MV 
Sbjct: 418 -KFKPDNVTFIGILSACL---------HCNWIEQGQEYFDSISNQHGMTPTLDHYACMVN 467

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
              R G  E A AL K M  +    + + WS +++  + +G    A    R +    L+P
Sbjct: 468 LLGRTGRIEQAVALIKNMAHDP---DFLIWSTLLSICSTKGDIVNAEVAARHL--FELDP 522

Query: 349 NVVTLVSLLSG----------CASVGALLLGKETHCYT----------IKRVLSVDGSHP 388
            +     +LS            ASV  L+  K    +           + R  S D +HP
Sbjct: 523 TIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHP 582

Query: 389 D 389
           +
Sbjct: 583 E 583



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 65/248 (26%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +   P+    L  QM   G  PD+ T                         
Sbjct: 224 WNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM------------------------ 259

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                      + ++A Y +C  +  AR++F E  +    DIV W  ++  YA++G  E 
Sbjct: 260 -----------STIIAAYCQCGRVDEARRVFSEFKEK---DIVCWTAMMVGYAKNGREED 305

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            L+LF  M  +  ++ D  +L + +S+CA L +   G+                      
Sbjct: 306 ALLLFNEMLLE-HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +CG +++A+ VF  M  ++VVSWNAM+ G ++ G  +DA  LF+ M Q+  K + V
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424

Query: 317 TWSAVIAG 324
           T+  +++ 
Sbjct: 425 TFIGILSA 432



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           ++ C R   +   +++ +++  + ++    F+ N L+ +Y++ G +  A+ +FD + +R+
Sbjct: 29  VLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRD 88

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             SW +L++ Y   G        FD+M       D V++   +   S +    + L+ F 
Sbjct: 89  XFSWNALLSAYAKSGSIQNLKATFDRMPFR----DSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 588 SMSKE 592
            M +E
Sbjct: 145 RMQRE 149


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/551 (39%), Positives = 329/551 (59%), Gaps = 17/551 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y +  S  DA  +F  M + NV    V+W+A+I+ Y+QRG+  +AL +F QM   G
Sbjct: 99  LIVFYVKCDSLRDARHVFDVMPERNV----VSWTAMISAYSQRGYASQALSLFVQMLRSG 154

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            EPN  T  ++L+ C      +LG++ H + IK       ++   + V ++L+DMYAK  
Sbjct: 155 TEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKL------NYEAHVYVGSSLLDMYAKDG 208

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +  AR +F  +    RDV + T +I  Y+Q G   +AL LF ++  Q + ++ N  T +
Sbjct: 209 KIHEARGIFQCLP--ERDVVSCTAIISGYAQLGLDEEALELFRRL--QREGMQSNYVTYT 264

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L A + LAAL  G+Q+H ++LR++    +  + N LIDMYS+ G++  AR +FD L +
Sbjct: 265 SVLTALSGLAALDHGKQVHNHLLRSEVPSYV-VLQNSLIDMYSKCGNLTYARRIFDTLHE 323

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLK 584
           R V+SW +++ GY  HG G +    F+ M  E  + PD VT L +L  CSH G+ D+G+ 
Sbjct: 324 RTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMD 383

Query: 585 -YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            ++D  S +  +   ++HY C+VD+LGRA R++ A E ++ MP EP+  IW  LL  C +
Sbjct: 384 IFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSV 443

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H+N+++GE   ++LL++E E  G+Y +LSN+YA+AGRW+DV  +R+LM    V K PG S
Sbjct: 444 HSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRS 503

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++  +   TF   D +HP+ +++   +  L  R K  GYVP  S  LHDVD+E+K  +L
Sbjct: 504 WIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKIL 563

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLAL +G++ T    PIR+ KNLRIC DCH+   + S I   E+ LRD NRFH  
Sbjct: 564 LSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRI 623

Query: 824 KEGSCTCKGYW 834
             G C+C  YW
Sbjct: 624 VGGKCSCGDYW 634



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 205/451 (45%), Gaps = 80/451 (17%)

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFR-LFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           P   S F  N+     + + + D   R   L M  RG   +   +  VL  C    + R 
Sbjct: 19  PRLLSTFPSNS--HHVLNIHIHDTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIRE 76

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VHA +  + +   V++   L+  Y +CD+L  AR +FD M +    ++VSW  +++A
Sbjct: 77  GQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPER---NVVSWTAMISA 133

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------- 262
           Y+Q G A   L LF +M      + +  +    L++C     +  G+Q            
Sbjct: 134 YSQRGYASQALSLFVQMLRS-GTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEA 192

Query: 263 ---------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                          G + EA+ +F+ +  +DVVS  A+++GY+++G  E+A  LF++++
Sbjct: 193 HVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQ 252

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           +E ++ N VT+++V+                                  LSG A   AL 
Sbjct: 253 REGMQSNYVTYTSVLTA--------------------------------LSGLA---ALD 277

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            GK+ H + ++  +      P  +++ N+LIDMY+KC ++  AR +FD +    R V +W
Sbjct: 278 HGKQVHNHLLRSEV------PSYVVLQNSLIDMYSKCGNLTYARRIFDTL--HERTVISW 329

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             M+  YS++G   + L LF  M  ++K VKP++ T+   L  C+       G  I  Y 
Sbjct: 330 NAMLVGYSKHGEGREVLELFNLMIDENK-VKPDSVTVLAVLSGCSHGGLEDKGMDIF-YD 387

Query: 488 LRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
           + +    + P   +  C++DM  R+G ++ A
Sbjct: 388 MTSGKISVQPDSKHYGCVVDMLGRAGRVEAA 418



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 166/357 (46%), Gaps = 49/357 (13%)

Query: 17  LTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP-----S 71
           + L  L TN + ++     C++         +++ +   +H  +I    TH  P     +
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRK--------RAIREGQRVHAHMIK---THYLPCVYLRT 97

Query: 72  HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW 131
            LI  YV  ++   A  +   + P   +V  W A+I    +      A  LF+QM+R G 
Sbjct: 98  RLIVFYVKCDSLRDARHVFD-VMPER-NVVSWTAMISAYSQRGYASQALSLFVQMLRSGT 155

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            P+E+TF  VL +C        G  +H+ I    ++++V+V ++L+ MYA+   +  AR 
Sbjct: 156 EPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARG 215

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +F  + +    D+VS   I++ YAQ G  E  L LF R+  +  +Q + V+  + L+A +
Sbjct: 216 IFQCLPER---DVVSCTAIISGYAQLGLDEEALELFRRLQRE-GMQSNYVTYTSVLTALS 271

Query: 252 SLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNA 285
            L     GKQ                          CG +  A+++F+ +  + V+SWNA
Sbjct: 272 GLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNA 331

Query: 286 MVTGYSRIGSFEDAFALFKKMRQEN-VKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           M+ GYS+ G   +   LF  M  EN VK + VT  AV++G +  G   + +D+F  M
Sbjct: 332 MLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDM 388



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 146/342 (42%), Gaps = 30/342 (8%)

Query: 29  FSVTTTPCIKITSLLL-RQCKSLTQVYLIHQQIIVQNL-THV-PPSHLIAAYVSHNAPSP 85
           F+   T CI  +  +L RQ         IH  II  N   HV   S L+  Y        
Sbjct: 162 FATVLTSCIGSSGFVLGRQ---------IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHE 212

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  + Q +      V    A+I    +L L + A  LF ++ R G   +  T+  VL A 
Sbjct: 213 ARGIFQCLPER--DVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTAL 270

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
             L +   G  VH  +  S   S V + N+L+ MY++C  L+YAR++FD + +     ++
Sbjct: 271 SGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHER---TVI 327

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           SWN ++  Y++ G+    L LF  M  + KV+ D V+++  LS C+  G   +G      
Sbjct: 328 SWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYD 387

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
             + K+  +    D   +  +V    R G  E AF   KKM  E    +   W  ++   
Sbjct: 388 MTSGKISVQ---PDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEP---SAAIWGCLLGAC 441

Query: 326 AQRGHGHEALDV--FRQMQFCGLEP-NVVTLVSLLSGCASVG 364
           +     H  LD+  F   Q   +EP N    V L +  AS G
Sbjct: 442 SV----HSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAG 479


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 322/542 (59%), Gaps = 54/542 (9%)

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFCGLEPNVVT 352
           GS +D+  +F++M + NV    ++W+A+I  Y Q G    EA+++F +M           
Sbjct: 9   GSVDDSRKVFEQMPEHNV----MSWTAIITAYVQSGECDKEAIELFCKM----------- 53

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
            +S    C                                V N+LI MYA+   ++ AR 
Sbjct: 54  -ISASVNC--------------------------------VGNSLISMYARSGRMEDARK 80

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
            FD +  KN  + ++  ++  Y++N  + +A  LF ++   D  +  +AFT +  L   A
Sbjct: 81  AFDILFEKN--LVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGIGISAFTFASLLSGAA 136

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            + A+  G QIH  +L+  Y+     + N LI MYSR G+I+ A  VF+ ++ RNV+SWT
Sbjct: 137 SIGAMGKGEQIHGRLLKGGYKSN-QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWT 195

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           S++TG+  HG   +A   F +M + G  P+ +T++ +L ACSH GM+ +G K+F+SM KE
Sbjct: 196 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 255

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
            GI  R EHYAC+VDLLGR+  L EA+E I  MP+    ++W  LL  CR+H N ELG  
Sbjct: 256 HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 315

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
           AA  +LE E +   +Y LLSN++A+AG+WKDV +IR  MK   + K  GCSW++ +    
Sbjct: 316 AAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 375

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAL 772
            F VG+ +HPQ+ +IY+ L  L  +IK MGY+P T F LHD+++E+K   LF+HSEK+A+
Sbjct: 376 RFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAV 435

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
           A+G+++T+   PIRI KNLR+CGDCH+AI +ISM    EI++RDSNRFHH K G C+C  
Sbjct: 436 AFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCND 495

Query: 833 YW 834
           YW
Sbjct: 496 YW 497



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 173/340 (50%), Gaps = 46/340 (13%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE-DAFALFKKM--------------- 306
           G +++++KVFE+M   +V+SW A++T Y + G  + +A  LF KM               
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISM 68

Query: 307 -----RQENVKL--------NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
                R E+ +         N+V+++A++ GYA+     EA  +F ++   G+  +  T 
Sbjct: 69  YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 128

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            SLLSG AS+GA+  G++ H   +K      G +  +  + NALI MY++C +++ A  +
Sbjct: 129 ASLLSGAASIGAMGKGEQIHGRLLK------GGYKSNQCICNALISMYSRCGNIEAAFQV 182

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +  ++R+V +WT MI  ++++G A  AL +F +M +     KPN  T    L AC+ 
Sbjct: 183 FNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLETG--TKPNEITYVAVLSACSH 238

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVS 530
           +  +  G Q H   +  ++  ++P + +  C++D+  RSG +  A    +++    + + 
Sbjct: 239 VGMISEG-QKHFNSMYKEHG-IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 296

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           W +L+    +HG  +    A + + ++   PD     +LL
Sbjct: 297 WRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAYILL 334



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 19/255 (7%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           D++ ++F QM      P+     +       + S  C      + C     S   V N+L
Sbjct: 12  DDSRKVFEQM------PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSL 65

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           ++MYAR   +  AR+ FD +F+    ++VS+N IV  YA++  +E   +LF  +  D  +
Sbjct: 66  ISMYARSGRMEDARKAFDILFEK---NLVSYNAIVDGYAKNLKSEEAFLLFNEI-ADTGI 121

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
                +  + LS  AS+G   +G+Q        ++ +     +    NA+++ YSR G+ 
Sbjct: 122 GISAFTFASLLSGAASIGAMGKGEQI-----HGRLLKGGYKSNQCICNALISMYSRCGNI 176

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           E AF +F +M   NV    ++W+++I G+A+ G    AL++F +M   G +PN +T V++
Sbjct: 177 EAAFQVFNEMEDRNV----ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAV 232

Query: 357 LSGCASVGALLLGKE 371
           LS C+ VG +  G++
Sbjct: 233 LSACSHVGMISEGQK 247



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 15/257 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +NA++    +    + AF LF ++   G     +TF  +L     + +   G  +H  + 
Sbjct: 93  YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 152

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+ SN  +CNAL++MY+RC  +  A Q+F+EM      +++SW +++  +A+ G A  
Sbjct: 153 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR---NVISWTSMITGFAKHGFATR 209

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDVV 281
            L +F +M  +   + + ++ V  LSAC+ +G  S G K    M +   +  RM+     
Sbjct: 210 ALEMFHKML-ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME----- 263

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            +  MV    R G   +A      M    +  + + W  ++   A R HG+  L      
Sbjct: 264 HYACMVDLLGRSGLLVEAMEFINSMP---LMADALVWRTLLG--ACRVHGNTELGRHAAE 318

Query: 342 QFCGLEPNVVTLVSLLS 358
                EP+      LLS
Sbjct: 319 MILEQEPDDPAAYILLS 335



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 49/250 (19%)

Query: 400 MYAKCK---SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN-DALALFPQMFQQDK 455
           MYAKC    SVD +R +F+ +   N  V +WT +I +Y Q+G  + +A+ LF +M     
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHN--VMSWTAIITAYVQSGECDKEAIELFCKMI---- 54

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
                + +++C                                V N LI MY+RSG ++ 
Sbjct: 55  -----SASVNC--------------------------------VGNSLISMYARSGRMED 77

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR  FD L ++N+VS+ +++ GY  +   ++A   F+++   G+     TF  LL   + 
Sbjct: 78  ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 137

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G + +G +    + K  G  +       ++ +  R   ++ A ++   M  +   I W 
Sbjct: 138 IGAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 195

Query: 636 ALLNGCRIHA 645
           +++ G   H 
Sbjct: 196 SMITGFAKHG 205


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/710 (34%), Positives = 382/710 (53%), Gaps = 52/710 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYA--RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +HA +  +    + +  + L+  YA   C  L YA+ +F+++ QP   ++  WNT++  Y
Sbjct: 91  IHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQP---NLYCWNTLIRGY 147

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           A S D     ++F  M        +  +      A + L     G     M     V + 
Sbjct: 148 ASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGM-----VIKA 202

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               D+   N+++  Y   G+ + A  +F  M  ++V    V+W+A+I  +A  G   +A
Sbjct: 203 SLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDV----VSWNAMINAFALGGLPDKA 258

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L +F++M+   ++PNV+T+VS+LS CA    L  G+   C  I+     +    + L++ 
Sbjct: 259 LLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWI-CSYIE-----NNGFTEHLILN 312

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPK----------------NRD-------------VA 425
           NA++DMY KC  ++ A+ +F+ ++ K                N D              A
Sbjct: 313 NAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTA 372

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  +I +Y QNG    AL+LF +M Q  K  KP+  TL CAL A A+L A+ FG  IH 
Sbjct: 373 AWNALISAYEQNGKPRVALSLFHEM-QLSKDAKPDEVTLICALCASAQLGAIDFGHWIHV 431

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y+ ++    L   +A  L+DMY++ G+++ A  VF  +++++V  W++++    M+G G 
Sbjct: 432 YIKKHDIN-LNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGK 490

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
            A   F  M +  + P+ VTF  +L AC+H+G+V++G + F+ M   +GI  + +HY C+
Sbjct: 491 AALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCV 550

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VD+ GRA  L++A   IE MP+ PT  +W ALL  C  H NVEL ELA   LLELE    
Sbjct: 551 VDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNH 610

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G++ LLSNIYA AG W+ V+ +R LM+ + VKK P CS +        F VGD +HP SQ
Sbjct: 611 GAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQ 670

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
           KIY  L  + ++ K +GY P  S  L    +D      L  HSEKLA+A+G+++TA   P
Sbjct: 671 KIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQP 730

Query: 785 IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IRI KN+RICGDCH+    +S + + +I+LRD  RFHHF+ G C+C  YW
Sbjct: 731 IRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  212 bits (539), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 156/550 (28%), Positives = 263/550 (47%), Gaps = 63/550 (11%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYV--SHNAPSPALSLLQRISPSPF 98
            + QC +  Q+  IH  ++  +    P   S L+ AY   S +    A ++  +I P P 
Sbjct: 78  FIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQI-PQP- 135

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSV 157
           +++ WN LIR       P  +F +FL M+      P+++TFPF+ KA   L     GS +
Sbjct: 136 NLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVL 195

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H ++  +   S++F+ N+L+  Y        A ++F  M  PG  D+VSWN ++ A+A  
Sbjct: 196 HGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM--PGK-DVVSWNAMINAFALG 252

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA-----SLGTW------SRG------- 259
           G  +  L+LF  M     V+ + +++V+ LSACA       G W      + G       
Sbjct: 253 GLPDKALLLFQEMEMK-DVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLIL 311

Query: 260 --------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                    +CG + +AK +F +M  KD+VSW  M+ G++++G++++A  +F  M  +  
Sbjct: 312 NNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHK-- 369

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGK 370
                 W+A+I+ Y Q G    AL +F +MQ     +P+ VTL+  L   A +GA+  G 
Sbjct: 370 --WTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGH 427

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
             H Y  K  +++      +  +  +L+DMYAKC +++ A  +F A+  + +DV  W+ M
Sbjct: 428 WIHVYIKKHDINL------NCHLATSLLDMYAKCGNLNKAMEVFHAV--ERKDVYVWSAM 479

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           IG+ +  G    AL LF  M +    +KPNA T +  L AC     +  G Q     L  
Sbjct: 480 IGALAMYGQGKAALDLFSSMLE--AYIKPNAVTFTNILCACNHAGLVNEGEQ-----LFE 532

Query: 491 QYEMLIPFVAN-----CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLG 544
           Q E L   V       C++D++ R+G ++ A    + +        W +L+     HG  
Sbjct: 533 QMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNV 592

Query: 545 DKAHWAFDQM 554
           + A  A+  +
Sbjct: 593 ELAELAYQNL 602



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 13/296 (4%)

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G E     ++  +  C +   L   K+ H + ++     D      L+   A+    + C
Sbjct: 67  GNEVESTNILEFIDQCTNTMQL---KQIHAHMLRTSRFCDPYTASKLLTAYAI----SSC 119

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
             +  A+ +F+ I   N  +  W  +I  Y+ +     +  +F  M        PN FT 
Sbjct: 120 SCLIYAKNVFNQIPQPN--LYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEF-PNKFTF 176

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
                A +RL  L  G  +H  V++      + F+ N LI+ Y  SG  D A  VF N+ 
Sbjct: 177 PFLFKAASRLKVLHLGSVLHGMVIKASLSSDL-FILNSLINFYGSSGAPDLAHRVFTNMP 235

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            ++VVSW +++  + + GL DKA   F +M  + + P+ +T + +L AC+    ++ G +
Sbjct: 236 GKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG-R 294

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +  S  +  G +        ++D+  +   +++A +L   M  E   + W  +L+G
Sbjct: 295 WICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDG 349


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/705 (35%), Positives = 385/705 (54%), Gaps = 38/705 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+ C     S  G  VH  +  SG   N+   N L+ MY +C     A ++FD M +  
Sbjct: 12  ILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPER- 70

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW+ +++ +  +GD +G L LF+ M G   +  +  +    L AC  L    +G 
Sbjct: 71  --NVVSWSALMSGHVLNGDLKGSLSLFSEM-GRQGIYPNEFTFSTNLKACGLLNALEKGL 127

Query: 261 Q----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           Q    C      K  FE M    V   N++V  YS+ G   +A  +F+++    V  +++
Sbjct: 128 QIHGFC-----LKIGFEMM----VEVGNSLVDMYSKCGRINEAEKVFRRI----VDRSLI 174

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLE--PNVVTLVSLLSGCASVGALLLGKETHC 374
           +W+A+IAG+   G+G +ALD F  MQ   ++  P+  TL SLL  C+S G +  GK+ H 
Sbjct: 175 SWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHG 234

Query: 375 YTIKRVLSVDGSH-PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           + ++      G H P    +  +L+D+Y KC  +  AR  FD I  K + + +W+ +I  
Sbjct: 235 FLVR-----SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI--KEKTMISWSSLILG 287

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+Q G   +A+ LF ++  Q+   + ++F LS  +   A  A LR G+Q+ A  ++    
Sbjct: 288 YAQEGEFVEAMGLFKRL--QELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLP-S 344

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
            L   V N ++DMY + G +D A   F  ++ ++V+SWT ++TGYG HGLG K+   F +
Sbjct: 345 GLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYE 404

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M +  + PD V +L +L ACSHSGM+ +G + F  + +  GI  R EHYAC+VDLLGRA 
Sbjct: 405 MLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAG 464

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
           RL EA  LI+ MP++P   IW  LL+ CR+H ++ELG+     LL ++++   +Y ++SN
Sbjct: 465 RLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSN 524

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +Y  AG W +    R L    G+KK  G SWV+ +     F  G+ +HP +  I E L  
Sbjct: 525 LYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKE 584

Query: 734 LVQRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT---TAPGTPIRITK 789
             +R++  +GYV      LHD+DDE K + L  HSEKLA+   + T      G  IR+ K
Sbjct: 585 AERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFK 644

Query: 790 NLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           NLR+C DCH  I  +S I     ++RD+ RFH F++G C+C  YW
Sbjct: 645 NLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689



 Score =  172 bits (436), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 234/510 (45%), Gaps = 84/510 (16%)

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           L  +  ++LI  Y     P  A  +   +     +V  W+AL+   V       +  LF 
Sbjct: 39  LNLITSNYLIDMYCKCREPLMAYKVFDSMPER--NVVSWSALMSGHVLNGDLKGSLSLFS 96

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
           +M R+G +P+E+TF   LKACG L +   G  +H      GF+  V V N+L+ MY++C 
Sbjct: 97  EMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 156

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSL 243
            ++ A ++F  +       ++SWN ++A +  +G     L  F  M   ++K + D  +L
Sbjct: 157 RINEAEKVFRRIVDR---SLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTL 213

Query: 244 VNALSACASLGTWSRGKQ----------------------------CGMMEEAKKVFERM 275
            + L AC+S G    GKQ                            CG +  A+K F+++
Sbjct: 214 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI 273

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           K K ++SW++++ GY++ G F +A  LFK++++ N +++    S++I  +A         
Sbjct: 274 KEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFAD-------F 326

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            + RQ                            GK+     +K    ++ S      V+N
Sbjct: 327 ALLRQ----------------------------GKQMQALAVKLPSGLETS------VLN 352

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +++DMY KC  VD A   F  +  K  DV +WTV+I  Y ++G    ++ +F +M + + 
Sbjct: 353 SVVDMYLKCGLVDEAEKCFAEMQLK--DVISWTVVITGYGKHGLGKKSVRIFYEMLRHN- 409

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDI 513
            ++P+       L AC+    ++ G ++ + +L      + P V +  C++D+  R+G +
Sbjct: 410 -IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETH--GIKPRVEHYACVVDLLGRAGRL 466

Query: 514 DTARVVFDNLKQR-NVVSWTSLMTGYGMHG 542
             A+ + D +  + NV  W +L++   +HG
Sbjct: 467 KEAKHLIDTMPIKPNVGIWQTLLSLCRVHG 496



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 170/340 (50%), Gaps = 20/340 (5%)

Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
            LVS+L  C   G    G + HCY +K      GS   +L+  N LIDMY KC+   +A 
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLK-----SGSGL-NLITSNYLIDMYCKCREPLMAY 61

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471
            +FD++  +N  V +W+ ++  +  NG    +L+LF +M +Q   + PN FT S  L AC
Sbjct: 62  KVFDSMPERN--VVSWSALMSGHVLNGDLKGSLSLFSEMGRQG--IYPNEFTFSTNLKAC 117

Query: 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
             L AL  G QIH + L+  +EM++  V N L+DMYS+ G I+ A  VF  +  R+++SW
Sbjct: 118 GLLNALEKGLQIHGFCLKIGFEMMVE-VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISW 176

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLA--PDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
            +++ G+   G G KA   F  M++  +   PD  T   LL ACS +GM+  G +    +
Sbjct: 177 NAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFL 236

Query: 590 SKE-FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
            +  F   + A     +VDL  +   L  A +  + +  E T I W +L+ G        
Sbjct: 237 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSSLILGYAQEGEFV 295

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
                  RL EL S+ D S+ L S I    G + D A +R
Sbjct: 296 EAMGLFKRLQELNSQID-SFALSSII----GVFADFALLR 330


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/493 (42%), Positives = 296/493 (60%), Gaps = 20/493 (4%)

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+  T   LL  CA + AL  G+  H    K  L         + V N+L+ +Y  C   
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLV------SLVFVKNSLVHLYGACGLF 173

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + A  +FD I P  R++ +W  ++  ++ NG  N+ L +F +M + +    P+ FT+   
Sbjct: 174 ESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVE--FAPDGFTVVSV 231

Query: 468 LMACARLAALRFGRQIHAYVLR-----NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           L ACA +  L  GR++H +V +     N +        N LID+Y++ G +D AR +F  
Sbjct: 232 LTACAEIGVLALGRRVHVFVAKVGLVGNAH------AGNALIDLYAKCGGVDDARKMFGE 285

Query: 523 LK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +   R VVSWTSL+ G  ++G G  A   F  M +E L P  +T + +LYACSH G+VD 
Sbjct: 286 MGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDD 345

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G +YFD M  E+GI+ R EH  C+VDLLGRA R++EA   I  MP+EP  ++W  LL  C
Sbjct: 346 GFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGAC 405

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
            +H  +E+GE A  RL+EL+    G Y LLSN+YA  GRW DV  +R  M   GV+K PG
Sbjct: 406 AMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPG 465

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            S V+ +     F +GDR+HP++ +IYE+L  + +R++  GY+P TS  L D++DEEK  
Sbjct: 466 HSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKES 525

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+LA+A+ +L + PGTPIRI KNLR+CGDCH AI  IS + + EII+RD +RFH
Sbjct: 526 ALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFH 585

Query: 822 HFKEGSCTCKGYW 834
           HFK G+C+CK YW
Sbjct: 586 HFKGGACSCKDYW 598



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 178/353 (50%), Gaps = 33/353 (9%)

Query: 30  SVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH---------VPPSH-LIAAYV- 78
           ++   PC    +  LR C +L +++L    +      H         V PSH L+A ++ 
Sbjct: 4   AIPRAPCTHPAAAALRHCVALLRLHLASPSLATAKQLHARALRAAPGVTPSHPLLAKHLL 63

Query: 79  ----SHNAPSP--ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW- 131
               +  AP    A+++L  + PSP   F  N ++R       P    R+ L + RR   
Sbjct: 64  FHLAALKAPPLRYAVAVLSGLLPSP-DPFSLNTVLRIFASSARP----RVALALHRRHLA 118

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            PD +T+P +L+AC  L + R G  +HA  C +G  S VFV N+L+ +Y  C     A +
Sbjct: 119 PPDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHR 178

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FDE+  P   ++VSWN+++  +A +G     L +F  M  +V+   DG ++V+ L+ACA
Sbjct: 179 VFDEIPPPER-NLVSWNSVLNGFAANGRPNEVLTVFREML-EVEFAPDGFTVVSVLTACA 236

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            +G  + G++  +      V +   V +  + NA++  Y++ G  +DA  +F +M    V
Sbjct: 237 EIGVLALGRRVHVF-----VAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEM---GV 288

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
              VV+W+++I G A  G G +AL +F  M+   L P  +T+V +L  C+  G
Sbjct: 289 GRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCG 341



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 171/357 (47%), Gaps = 35/357 (9%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
           D  S NT++  +A S      L L  R         D  +    L ACA L     G+  
Sbjct: 89  DPFSLNTVLRIFASSARPRVALALHRRHLA----PPDTHTYPPLLQACARLLALRYGE-- 142

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G+  EA K      V  V   N++V  Y   G FE A  +F ++     + N+V+W++V+
Sbjct: 143 GLHAEACK---NGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPP--ERNLVSWNSVL 197

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
            G+A  G  +E L VFR+M      P+  T+VS+L+ CA +G L LG+  H + + +V  
Sbjct: 198 NGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVF-VAKVGL 256

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           V  +H       NALID+YAKC  VD AR MF  +    R V +WT +I   + NG   D
Sbjct: 257 VGNAHAG-----NALIDLYAKCGGVDDARKMFGEMG-VGRTVVSWTSLIVGLAVNGFGMD 310

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLA----ALRFGRQIHA-YVLRNQYEMLIP 497
           AL LF  M +++KL+ P   T+   L AC+         R+  Q+ A Y +  + E L  
Sbjct: 311 ALQLF-SMMEREKLM-PTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHL-- 366

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWA 550
               C++D+  R+G ++ A      +  + N V W +L+    MH    +G+ A WA
Sbjct: 367 ---GCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAA-WA 419



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 114/258 (44%), Gaps = 26/258 (10%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  +   I P   ++  WN+++        P+    +F +M+   + PD +T   VL AC
Sbjct: 176 AHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTAC 235

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DI 204
            E+     G  VH  +   G   N    NAL+ +YA+C  +  AR++F EM   G+   +
Sbjct: 236 AEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEM---GVGRTV 292

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           VSW +++   A +G     L LF+ M  + K+    +++V  L AC+          CG+
Sbjct: 293 VSWTSLIVGLAVNGFGMDALQLFSMMERE-KLMPTEITMVGVLYACS---------HCGL 342

Query: 265 MEEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
           +++  + F++MK +      +     MV    R G  E+A      M  E    N V W 
Sbjct: 343 VDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEP---NAVVWR 399

Query: 320 AVIAGYAQRGHGHEALDV 337
            ++   A     H+ L++
Sbjct: 400 TLLGACAM----HKKLEI 413


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 337/577 (58%), Gaps = 25/577 (4%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIG-SFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           + +A  +   +   DV S+N +V    R       A ALF +M + +      +WSA+++
Sbjct: 77  LPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDH----FSWSAIVS 132

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEP------NVVTLVSLLSGCASVGALLLGKETHCYTI 377
            + + G    AL ++R+M     EP      N  T  S L+   +      G+E HC+ +
Sbjct: 133 AHVRHGQPRAALAIYRRML---REPGGSGADNEFTASSALAAATAARCARAGRELHCHVV 189

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +R +  D       +V +AL DMYAK   +D AR +FD +    RDV +WT M+  Y   
Sbjct: 190 RRGIDADA------VVWSALADMYAKFGRLDDARSVFDRM--PVRDVVSWTAMLDRYFDA 241

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   +   LF +M +   L  PN FT +  L ACA   + + G+Q+H  + +++      
Sbjct: 242 GRDGEGFRLFVRMMRSGIL--PNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSC- 298

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F  + L+ MYS+ GD+ TA  VF  + + ++VSWT++++GY  +G  D+A   FD +   
Sbjct: 299 FAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSS 358

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G  PD VTF+ +L AC+H+G+VD+GL  F S+  ++GI   A+HYAC++DLL R+   + 
Sbjct: 359 GFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFER 418

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A ++I  MP++P   +W +LL GCRIH NV L   AA  L E+E E   +Y  L+NIYA+
Sbjct: 419 AEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYAS 478

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            G + +V  +R  M+  G+ K P  SW++       F VGD++HPQ+++IY +L  L  +
Sbjct: 479 VGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVK 538

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           ++  GYV  T F LHDV+DE+K   +  HSE+LA+A+GI+ T  G+PI++ KNLRICGDC
Sbjct: 539 MREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDC 598

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+ I  IS I+  EII+RDSNRFHHFK GSC+C+ YW
Sbjct: 599 HTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 194/482 (40%), Gaps = 79/482 (16%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRR---GWHPDEYTFPFVLKACGELPSSRCGSSV 157
           F W+A++   VR   P  A  ++ +M+R        +E+T    L A      +R G  +
Sbjct: 125 FSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGREL 184

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   G D++  V +AL  MYA+   L  AR +FD M    + D+VSW  ++  Y  +
Sbjct: 185 HCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRM---PVRDVVSWTAMLDRYFDA 241

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMK 276
           G    G  LF RM     +  +  +    L ACA   +   GKQ  G M +++       
Sbjct: 242 GRDGEGFRLFVRMMRS-GILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSR------T 294

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
                + +A+V  YS+ G    A  +F+ M     K ++V+W+A+I+GYAQ G   EAL 
Sbjct: 295 GDSCFAGSALVHMYSKYGDMGTAMRVFRGM----PKPDLVSWTAMISGYAQNGQPDEALH 350

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F  +   G  P+ VT V +LS CA  G +  G                     L + ++
Sbjct: 351 CFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKG---------------------LGIFHS 389

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           + D Y    + D    + D ++             G + +   A D +   P        
Sbjct: 390 IKDKYGIEHTADHYACVIDLLSRS-----------GLFER---AEDMINTMP-------- 427

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           VKPN F  +  L  C     +R        +   + E    +V   L ++Y+  G  D  
Sbjct: 428 VKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVT--LANIYASVGLFDEV 485

Query: 517 RVVFDNLKQRNVV-----SWTSLMTGYGMHGLGDKAHWAFDQ-----------MRKEGLA 560
             +   ++ R +      SW  + T   +  +GDK+H   ++           MR+EG  
Sbjct: 486 ENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYV 545

Query: 561 PD 562
            D
Sbjct: 546 AD 547



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 126/266 (47%), Gaps = 14/266 (5%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W A++ R          FRLF++MMR G  P+E+T+  VL+AC E  S + G  VH 
Sbjct: 228 VVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHG 287

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +  S    + F  +AL+ MY++   +  A ++F  M +P   D+VSW  +++ YAQ+G 
Sbjct: 288 RMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKP---DLVSWTAMISGYAQNGQ 344

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F  M      + D V+ V  LSACA  G   +G   G+    K  +      D
Sbjct: 345 PDEALHCFD-MLLSSGFRPDHVTFVGVLSACAHAGLVDKG--LGIFHSIKDKYGIEHTAD 401

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
              +  ++   SR G FE A  +   M    VK N   W++++ G   R H +  L  + 
Sbjct: 402 --HYACVIDLLSRSGLFERAEDMINTM---PVKPNKFLWASLLGGC--RIHKNVRLAWWA 454

Query: 340 QMQFCGLEP-NVVTLVSLLSGCASVG 364
                 +EP N  T V+L +  ASVG
Sbjct: 455 AEALFEIEPENPATYVTLANIYASVG 480



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 187/455 (41%), Gaps = 87/455 (19%)

Query: 161 ICSSGFDSNVFVCNALMAMYARCDT-LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           + SS   ++V   N L+A   R    L+ AR LFD M +    D  SW+ IV+A+ + G 
Sbjct: 83  LLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRR---DHFSWSAIVSAHVRHGQ 139

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSAC------------------------ASLGT 255
               L ++ RM  +    G       + +                          A    
Sbjct: 140 PRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVV 199

Query: 256 WSR----GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           WS       + G +++A+ VF+RM V+DVVSW AM+  Y   G   + F LF +M +   
Sbjct: 200 WSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRS-- 257

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
                                            G+ PN  T   +L  CA   +  LGK+
Sbjct: 258 ---------------------------------GILPNEFTYAGVLRACAEFTSEKLGKQ 284

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H    K   S  G   D     +AL+ MY+K   +  A  +F  + PK  D+ +WT MI
Sbjct: 285 VHGRMAK---SRTG---DSCFAGSALVHMYSKYGDMGTAMRVFRGM-PKP-DLVSWTAMI 336

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QNG  ++AL  F  +       +P+  T    L ACA    +  G  I  + ++++
Sbjct: 337 SGYAQNGQPDEALHCFDMLLSSG--FRPDHVTFVGVLSACAHAGLVDKGLGIF-HSIKDK 393

Query: 492 YEMLIPFVAN---CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKA 547
           Y   I   A+   C+ID+ SRSG  + A  + + +  + N   W SL+ G  +H     A
Sbjct: 394 YG--IEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLA 451

Query: 548 HWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQ 581
            WA + + +  + P+   T++ L    +  G+ D+
Sbjct: 452 WWAAEALFE--IEPENPATYVTLANIYASVGLFDE 484


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 328/572 (57%), Gaps = 15/572 (2%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G    A+ +FER+  ++V+SWN ++ GY + G  E A  LF +M   NV     TW+A++
Sbjct: 91  GDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNV----ATWNAMV 146

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           AG    G   E+L  F  M+  G++P+   L SL   CA +  ++ G++ H Y ++  L 
Sbjct: 147 AGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLD 206

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  D+ V ++L  MY +C  +        A+   N  + +    I   +QNG A  
Sbjct: 207 ------RDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN--IVSCNTTISGRTQNGDAEG 258

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           AL  F  M  +   V+ NA T   A+ +C+ LAAL  G+QIHA  ++   + ++P V   
Sbjct: 259 ALEFFCLM--RGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVP-VMTS 315

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ MYSR G +  +  V       ++V  +++++ YG HG G KA   F QM   G  P+
Sbjct: 316 LVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPN 375

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            VTFL LLYACSHSG+ D+G+  F+ M+K +G+    +HY CIVDLLGR+  L+EA +LI
Sbjct: 376 EVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLI 435

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MP++P  +IW  LL+ C+     ++ E  A R++EL+     SY LLSNI A + RW+
Sbjct: 436 LSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWE 495

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DV+++R  M+   V+K PG SWV+ K     F  GD +H + ++I E L  ++ RI+  G
Sbjct: 496 DVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCG 555

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y P  S   HD++DEEK   L  HSEKLA+A+  L+   G PIR+ KNLR+C DCH AI 
Sbjct: 556 YAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIK 615

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +S +I  EI++RD +RFHHFK+G C+C  YW
Sbjct: 616 LMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 15/292 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  YV +     A  L   +     +V  WNA++       L + +   F  M R G  
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPAR--NVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 171

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDEY    + + C  L     G  VHA +  SG D ++ V ++L  MY RC  L      
Sbjct: 172 PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 231

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
              +  P + +IVS NT ++   Q+GDAEG L  F  M G   V+ + V+ V+A+++C+ 
Sbjct: 232 LRAL--PSL-NIVSCNTTISGRTQNGDAEGALEFFCLMRG-AGVEANAVTFVSAVTSCSD 287

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L   ++G+Q   +     V      K V    ++V  YSR G   D+    +++  E   
Sbjct: 288 LAALAQGQQIHALAIKTGV-----DKVVPVMTSLVHMYSRCGCLGDS----ERVCLEYSG 338

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            ++V  SA+I+ Y   GHG +A+ +F+QM   G EPN VT ++LL  C+  G
Sbjct: 339 TDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSG 390



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 201/464 (43%), Gaps = 64/464 (13%)

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +IR     R+ +   R F    R G   +   F  + +AC  LP  R    +HA   +SG
Sbjct: 20  IIRLCSTGRVKEALHRRF----REGLWSEPGLFSHIFRACQALPLLR---QLHAFAATSG 72

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
             ++ F  N L+  YA       AR LF+ + +    +++SWN ++  Y ++GD E    
Sbjct: 73  AAADRFTANHLLLAYADLGDFPTARGLFERIPKR---NVMSWNILIGGYVKNGDLETARK 129

Query: 226 LFARM------TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--- 276
           LF  M      T +  V G    L N+     SLG +   ++ GM  +   +    +   
Sbjct: 130 LFDEMPARNVATWNAMVAG----LTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCA 185

Query: 277 -VKDVVS-------------------WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
            ++DVVS                    +++   Y R G   D  A  + +      LN+V
Sbjct: 186 GLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRAL----PSLNIV 241

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           + +  I+G  Q G    AL+ F  M+  G+E N VT VS ++ C+ + AL  G++ H   
Sbjct: 242 SCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALA 301

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSYS 435
           IK    VD   P    V+ +L+ MY++C  + D  RV  +       D+   + MI +Y 
Sbjct: 302 IK--TGVDKVVP----VMTSLVHMYSRCGCLGDSERVCLEY---SGTDLVLCSAMISAYG 352

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            +G    A+ LF QM       +PN  T    L AC+       G  ++ + L  +   L
Sbjct: 353 FHGHGQKAVGLFKQMMAAG--AEPNEVTFLTLLYACSHSGLKDEG--MNCFELMTKTYGL 408

Query: 496 IPFVAN--CLIDMYSRSGDIDTAR-VVFDNLKQRNVVSWTSLMT 536
            P V +  C++D+  RSG ++ A  ++     Q + V W +L++
Sbjct: 409 QPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 452



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F AN L+  Y+  GD  TAR +F+ + +RNV+SW  L+ GY  +G  + A   FD+M   
Sbjct: 78  FTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPAR 137

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            +A    T+  ++   ++SG+ ++ L +F +M +E
Sbjct: 138 NVA----TWNAMVAGLTNSGLNEESLGFFFAMRRE 168


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/684 (37%), Positives = 384/684 (56%), Gaps = 34/684 (4%)

Query: 154 GSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDIVSWNTIV 211
           G ++HA +I ++ FD  V + N L++ YA+C  +  AR +FD M F+    + VS N ++
Sbjct: 30  GKALHARLITAAHFD--VVLHNNLISFYAKCGRVGLARTVFDAMPFR----NAVSANLLM 83

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
           + YA SG  +  L L       V    +   L  A+SA A++ ++  G+QC         
Sbjct: 84  SGYASSGRHKESLQLLRV----VDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGF 139

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            E+  V     +NA++  Y +    EDA  +F+ +       +   ++++I GY  RG  
Sbjct: 140 AEQRYV-----FNAVLYMYCQCAHMEDASKVFESVS----GFDAFAFNSMINGYLDRGQL 190

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
             +L + R M     + + V+ V++L  CAS+   +LG + H   +K+ L ++      +
Sbjct: 191 DGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELN------V 244

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V +AL+DMY KC  V  A   F+ +  KN  V +WT ++ +Y+QN    DAL LF  M 
Sbjct: 245 YVGSALVDMYGKCDHVHDANRAFEVLPEKN--VVSWTAVMTAYTQNELYEDALQLFLDME 302

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRS 510
            +   V+PN FT + AL +CA LAALR G  + A V++   ++ L+  V+N L++MYS+S
Sbjct: 303 MEG--VQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLL--VSNALMNMYSKS 358

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G I+ A  VF ++  R+VVSW  ++TGY  HGL  +   AF  M    + P  VTF+ +L
Sbjct: 359 GSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVL 418

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            AC+  G+VD+   Y ++M KE GI+   EHY C+V LL R  RLDEA   I    +   
Sbjct: 419 SACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTD 478

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
            + W +LLN C+++ N  LG   A ++L+LE    G+Y LLSN+YA A RW  V ++R  
Sbjct: 479 VVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKH 538

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           M+   V+K PG SW+        F   ++ HPQ  +I + L  L+ +IKA+GYVP  +  
Sbjct: 539 MRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVV 598

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHD+DDE K + L  HSEKLALA+G++ T  G  I I KNLRIC DCH AI  IS++ + 
Sbjct: 599 LHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSR 658

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           +I++RD+ RFH  + G C+C  YW
Sbjct: 659 KIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 202/483 (41%), Gaps = 95/483 (19%)

Query: 124 LQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
           LQ++R   +  +EY     + A   + S   G   H     +GF    +V NA++ MY +
Sbjct: 96  LQLLRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQ 155

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           C  +  A ++F+ +   G  D  ++N+++  Y   G  +G L +   MTG+ + + D VS
Sbjct: 156 CAHMEDASKVFESV--SGF-DAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAE-KWDYVS 211

Query: 243 LVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMK 276
            V  L  CAS+     G Q                          C  + +A + FE + 
Sbjct: 212 YVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLP 271

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            K+VVSW A++T Y++   +EDA  LF  M  E                           
Sbjct: 272 EKNVVSWTAVMTAYTQNELYEDALQLFLDMEME--------------------------- 304

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
                   G++PN  T    L+ CA + AL  G       +K        H D L+V NA
Sbjct: 305 --------GVQPNEFTYAVALNSCAGLAALRTGNALGACVMKT------GHWDHLLVSNA 350

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L++MY+K  S++ A  +F  I+   RDV +W ++I  Y+ +G A + +  F  M      
Sbjct: 351 LMNMYSKSGSIEDAHRVF--ISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLS--AA 406

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA-----NCLIDMYSRSG 511
           V P+  T    L ACA+L     G    A+   N     +          C++ +  R G
Sbjct: 407 VIPSYVTFVGVLSACAQL-----GLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVG 461

Query: 512 DIDTA-RVVFDNLKQRNVVSWTSLMTG---YGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
            +D A R + +N    +VV+W SL+     Y  +GLG   H   +Q+ +  L P  V   
Sbjct: 462 RLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLG---HRVAEQILQ--LEPSDVGTY 516

Query: 568 VLL 570
           VLL
Sbjct: 517 VLL 519



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 13/271 (4%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           S S F  F +N++I   +     D +  +   M       D  ++  VL  C  +  S  
Sbjct: 168 SVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVL 227

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G+ VHA       + NV+V +AL+ MY +CD +  A + F+ + +    ++VSW  ++ A
Sbjct: 228 GAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEK---NVVSWTAVMTA 284

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           Y Q+   E  L LF  M  +  VQ +  +   AL++CA L     G   G        ++
Sbjct: 285 YTQNELYEDALQLFLDMEME-GVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWD 343

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            + V      NA++  YS+ GS EDA  +F  M       +VV+W+ +I GYA  G   E
Sbjct: 344 HLLVS-----NALMNMYSKSGSIEDAHRVFISMPLR----DVVSWNLIITGYAHHGLARE 394

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            ++ F  M    + P+ VT V +LS CA +G
Sbjct: 395 GMEAFHSMLSAAVIPSYVTFVGVLSACAQLG 425



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 127/269 (47%), Gaps = 31/269 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W A++    +  L ++A +LFL M   G  P+E+T+   L +C  L + R G+++ 
Sbjct: 274 NVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALG 333

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  +G   ++ V NALM MY++  ++  A ++F  M  P + D+VSWN I+  YA  G
Sbjct: 334 ACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISM--P-LRDVVSWNLIITGYAHHG 390

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            A  G+  F  M     V    V+ V  LSACA         Q G+++EA      M +K
Sbjct: 391 LAREGMEAFHSML-SAAVIPSYVTFVGVLSACA---------QLGLVDEAFYYLNTM-MK 439

Query: 279 DV------VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG---YAQRG 329
           +V        +  MV    R+G  ++A    + +    +  +VV W +++     Y   G
Sbjct: 440 EVGITPGKEHYTCMVGLLCRVGRLDEA---ERFIVNNCIGTDVVAWRSLLNSCQVYKNYG 496

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
            GH   +     Q   LEP+ V    LLS
Sbjct: 497 LGHRVAE-----QILQLEPSDVGTYVLLS 520


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 357/594 (60%), Gaps = 24/594 (4%)

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           +L+ A+S C+S+ ++ R   C       +V + +        + +V+ Y  +G  +DA  
Sbjct: 43  ALITAISTCSSI-SYCRALHC-------RVIKSVNYNHGFIGDQLVSSYVELGCTKDALE 94

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNVVTLVSLLSGC 360
           LF ++  +++    V+W+++I+G+++R      L +  +M+F  GL+PN VT++ ++S C
Sbjct: 95  LFDELPDKDL----VSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSAC 150

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420
           A VG L +GK  H   +K  + ++      + V+N+LI++Y KC  ++ A  +F+ ++ +
Sbjct: 151 AGVGELDVGKCIHGIAVKSGMLLE------VKVVNSLINLYGKCGCLEAACCLFEGMSVQ 204

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           +  + +W  M+  +   G A   +  F  M +    +  +  T+   L+AC  L   +  
Sbjct: 205 S--LVSWNSMVAVHVHMGLAEKGIGYFIMMRRAG--INSDQATVVSLLLACENLGVRKLA 260

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
             +H Y+L    +  +  +A  L+D+Y++ G +  +  VF  +   + V+WT++++ Y M
Sbjct: 261 EAVHGYILNGGLDGNLA-IATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAM 319

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           HG G +A   F+ M +EG+ PD VTF  LL ACSHSG+V++G  YF  M + +G+  R E
Sbjct: 320 HGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVE 379

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HY+C+VDLLGR+  L++A +LI+ MPMEP   +W AL+  CR+  N+ELG+  A RL  L
Sbjct: 380 HYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSL 439

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           +     +Y  LSN+Y+ AG+W+D +++R+LMK   + + PGCS+++       F +GD++
Sbjct: 440 DPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQS 499

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HP +++IY  L  LV++ + +G+  +T + LHDVD+E K DL+ +HSEKLA+A+G+L T 
Sbjct: 500 HPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTN 559

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            G P+ ITKN+RICGDCH     IS+I    II+RD+ RFHHF  G C+C  YW
Sbjct: 560 AGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 195/456 (42%), Gaps = 47/456 (10%)

Query: 21  HLFTNI-KLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQ-NLTH-VPPSHLIAAY 77
           H F+N+  L S   T         +  C S++    +H ++I   N  H      L+++Y
Sbjct: 32  HAFSNVDSLVSALITA--------ISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSY 83

Query: 78  VSHNAPSPALSLLQRISPSPFSVFWWNALI----RRAVRLRLPDNAFRLFLQMMRRGWHP 133
           V       AL L   +      +  WN+LI    RRA         FR+  +M   G  P
Sbjct: 84  VELGCTKDALELFDELPDK--DLVSWNSLISGFSRRADLGICLGLLFRMRFEM---GLKP 138

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +E T   V+ AC  +     G  +H +   SG    V V N+L+ +Y +C  L  A  LF
Sbjct: 139 NEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLF 198

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           + M    +  +VSWN++VA +   G AE G+  F  M     +  D  ++V+ L AC +L
Sbjct: 199 EGM---SVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMR-RAGINSDQATVVSLLLACENL 254

Query: 254 GTWSRGKQCGMMEEAKK--VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           G          + EA    +       ++    A++  Y+++G+  D+  +F  M    +
Sbjct: 255 GVRK-------LAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGM----I 303

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             + V W+A+++ YA  G G EA++ F  M   G+ P+ VT   LLS C+  G +  GK 
Sbjct: 304 NPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKN 363

Query: 372 THCYTIKRVLSVDGSHPDDLMV--INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
                 K +    G    +L V   + ++D+  +   ++ A  +  ++ P   +   W  
Sbjct: 364 ----YFKIMYEFYGV---ELRVEHYSCMVDLLGRSGHLNDAYKLIKSM-PMEPNSGVWGA 415

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           +IG+    G       +  ++F  D     N  TLS
Sbjct: 416 LIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLS 451



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 147/342 (42%), Gaps = 53/342 (15%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN+++   V + L +     F+ M R G + D+ T   +L AC  L   +   +VH
Sbjct: 205 SLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVH 264

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I + G D N+ +  AL+ +YA+  TLS + ++F  M  P   D V+W  ++++YA  G
Sbjct: 265 GYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINP---DAVAWTAMLSSYAMHG 321

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-- 276
                +  F  M  +  V  D V+  + LSAC+           G++EE K  F+ M   
Sbjct: 322 RGREAIEHFELMVRE-GVVPDHVTFTHLLSACS---------HSGLVEEGKNYFKIMYEF 371

Query: 277 ---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                 V  ++ MV    R G   DA+ L K M  E    N   W A+I     RG+   
Sbjct: 372 YGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEP---NSGVWGALIGACRVRGNIEL 428

Query: 334 ALDVFRQMQFCGLEP----NVVTLVSLLSG------CASVGALLL--------------- 368
             +V  ++    L+P    N +TL ++ S        + V AL+                
Sbjct: 429 GKEVAERL--FSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEH 486

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
           G + HC+ +      D SHPD   + N L ++  K + V  A
Sbjct: 487 GNKIHCFVMG-----DQSHPDTEQIYNKLEELVRKNREVGFA 523


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/692 (34%), Positives = 382/692 (55%), Gaps = 32/692 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN+LI         ++A  ++ +    G  PD +T   VL ACG L + + G +VH VI 
Sbjct: 190 WNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIE 249

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   +V + N L++MY + + L  AR++F +M    + D V+WNT++  YAQ G  E 
Sbjct: 250 KIGIAGDVIIGNGLLSMYFKFERLREARRVFSKM---AVKDSVTWNTMICGYAQLGRHEA 306

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            + LF  M     + G   D +S+ + + AC   G    GK        K +       D
Sbjct: 307 SVKLFMDM-----IDGFVPDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFECD 356

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            V+ N ++  Y++ G    A  +F   + ++     VTW+++I GY Q G+  E L+ F+
Sbjct: 357 TVACNILIDMYAKCGDLLAAQEVFDTTKCKDS----VTWNSLINGYTQSGYYKEGLESFK 412

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
            M+    +P+ VT V LLS  + +  +  G+  HC  IK     +      L++ N+L+D
Sbjct: 413 MMKM-ERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAE------LIIGNSLLD 465

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YAKC  +D    +F  ++    D+ +W  +I S            +  +M  +  +  P
Sbjct: 466 VYAKCGEMDDLLKVFSYMSA--HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLM--P 521

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +  T+   L  C+ LA  R G++IH Y+ ++ +E  +P + N LI+MYS+ G ++    V
Sbjct: 522 DEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP-IGNALIEMYSKCGSLENCIKV 580

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           F  +K+++VV+WT+L++ +GM+G G KA  AF  M   G+ PD V F+  ++ACSHSGMV
Sbjct: 581 FKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMV 640

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +GL++FD M  ++ +  R EHYAC+VDLL R+  L +A E I  MPM+P   +W ALL+
Sbjct: 641 KEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLS 700

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CR   N  + +  + ++LEL S+  G Y L+SNIYA  G+W  V  +R+ MK  G+KK 
Sbjct: 701 ACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
           PG SW++ ++    F  GD++  Q  K+ ++L  LV+ +   GYV    FALHDV++++K
Sbjct: 761 PGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDK 820

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
            D+L  HSE+LA+A+G+L T PG+P+ I   L
Sbjct: 821 RDMLCGHSERLAIAFGLLNTKPGSPLLIFPTL 852



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 183/687 (26%), Positives = 310/687 (45%), Gaps = 92/687 (13%)

Query: 40  TSLL--LRQCKSLTQVYLIHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSPALSLLQRISP 95
           +SLL  L   K+  Q+  +H  II    +L+ +    LI+ Y     P  ++S+ + ISP
Sbjct: 23  SSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISP 82

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           +  +V+ WN++IR      L   A   + +M  +   PD +TFP V+ +C  +     G 
Sbjct: 83  TN-NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH      GF+S++++ NAL+ MY+R   L  AR +F+EM      D VSWN++++ Y 
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR---DSVSWNSLISGYC 198

Query: 216 QSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSACASLGTWSRG-------KQCGM-- 264
            +G  E  L ++   RMTG V    D  ++ + L AC SL     G       ++ G+  
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVP---DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 265 -----------------MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                            + EA++VF +M VKD V+WN M+ GY+++G  E +  LF  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
                                                G  P+++++ S +  C   G L 
Sbjct: 316 D------------------------------------GFVPDMLSITSTIRACGQSGDLQ 339

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           +GK  H Y I            D +  N LIDMYAKC  +  A+ +FD    K +D  TW
Sbjct: 340 VGKFVHKYLIGSGFEC------DTVACNILIDMYAKCGDLLAAQEVFD--TTKCKDSVTW 391

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
             +I  Y+Q+G   + L  F  M  +    KP++ T    L   ++LA +  GR IH  V
Sbjct: 392 NSLINGYTQSGYYKEGLESFKMMKMER---KPDSVTFVLLLSIFSQLADINQGRGIHCDV 448

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           ++  +E  +  + N L+D+Y++ G++D    VF  +   +++SW +++            
Sbjct: 449 IKFGFEAEL-IIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
               ++MR EGL PD  T L +L  CS   +  QG +    + K  G  +       +++
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIE 566

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           +  +   L+  +++ + M  E   + W AL++   ++   +   L A + +EL      S
Sbjct: 567 MYSKCGSLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKA-LKAFQDMELSGVLPDS 624

Query: 668 YTLLSNIYA--NAGRWKDVARIRSLMK 692
              ++ I+A  ++G  K+  R    MK
Sbjct: 625 VAFIAFIFACSHSGMVKEGLRFFDRMK 651


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/693 (35%), Positives = 392/693 (56%), Gaps = 34/693 (4%)

Query: 151 SRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
           S+CG   +A     S  + NVF  N ++  YA+   +  ARQLFDE+ QP   D VS+NT
Sbjct: 54  SKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQP---DTVSYNT 110

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           +++ YA + +    ++LF RM   +  + DG +L   ++AC       +   C  +    
Sbjct: 111 LISGYADARETFAAMVLFKRMR-KLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGF 169

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
             +  +        NA VT YS+ G   +A ++F  M +     + V+W+++I  Y Q  
Sbjct: 170 DSYSSVN-------NAFVTYYSKGGLLREAVSVFYGMDELR---DEVSWNSMIVAYGQHK 219

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
            G +AL ++++M F G + ++ TL S+L+   S+  L+ G++ H   IK      G H +
Sbjct: 220 EGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA-----GFHQN 274

Query: 390 DLMVINALIDMYAKCKSVD----VARVMFDAIAPKNRDVATWTVMIGSYSQNGG-ANDAL 444
              V + LID Y+KC   D      +V  + ++P   D+  W  MI  YS N   + +A+
Sbjct: 275 S-HVGSGLIDFYSKCGGCDGMYDSEKVFQEILSP---DLVVWNTMISGYSMNEELSEEAV 330

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
             F QM  Q    +P+  +  C   AC+ L++    +QIH   +++        V N LI
Sbjct: 331 KSFRQM--QRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALI 388

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            +Y +SG++  AR VFD + + N VS+  ++ GY  HG G +A   + +M   G+AP+ +
Sbjct: 389 SLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKI 448

Query: 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
           TF+ +L AC+H G VD+G +YF++M + F I   AEHY+C++DLLGRA +L+EA   I+ 
Sbjct: 449 TFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDA 508

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684
           MP +P  + W ALL  CR H N+ L E AAN L+ ++      Y +L+N+YA+A +W+++
Sbjct: 509 MPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEM 568

Query: 685 ARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744
           A +R  M+   ++K+PGCSW++ K+    F   D +HP  +++ E L  +++++K +GYV
Sbjct: 569 ASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYV 628

Query: 745 PQTSFALHDVDDEEKGDL---LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
               +A+   D+  +GD    L  HSEKLA+A+G+++T  G  + + KNLRICGDCH+AI
Sbjct: 629 MDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAI 688

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            F+S +   EII+RD+ RFH FK+G C+C  YW
Sbjct: 689 KFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 169/335 (50%), Gaps = 22/335 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I    + +    A  L+ +M+ +G+  D +T   VL A   L     G   H  + 
Sbjct: 208 WNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLI 267

Query: 163 SSGFDSNVFVCNALMAMYAR---CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +GF  N  V + L+  Y++   CD +  + ++F E+  P   D+V WNT+++ Y+ + +
Sbjct: 268 KAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSP---DLVVWNTMISGYSMNEE 324

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVK 278
                +   R    +  + D  S V   SAC++L + S+ KQ  G+  ++     R+ V 
Sbjct: 325 LSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVN 384

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
                NA+++ Y + G+ +DA  +F +M +    LN V+++ +I GYAQ GHG EAL ++
Sbjct: 385 -----NALISLYYKSGNLQDARWVFDRMPE----LNAVSFNCMIKGYAQHGHGTEALLLY 435

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++M   G+ PN +T V++LS CA  G +  G+E +  T+K    ++          + +I
Sbjct: 436 QRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE-YFNTMKETFKIEPEAEH----YSCMI 490

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           D+  +   ++ A    DA+  K   VA W  ++G+
Sbjct: 491 DLLGRAGKLEEAERFIDAMPYKPGSVA-WAALLGA 524



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 121/269 (44%), Gaps = 24/269 (8%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           SP  V W   +   ++   L + A + F QM R G  PD+ +F  V  AC  L S     
Sbjct: 306 SPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCK 365

Query: 156 SVHAVICSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            +H +   S   SN + V NAL+++Y +   L  AR +FD M  P + + VS+N ++  Y
Sbjct: 366 QIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRM--PEL-NAVSFNCMIKGY 422

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
           AQ G     L+L+ RM  D  +  + ++ V  LSACA          CG ++E ++ F  
Sbjct: 423 AQHGHGTEALLLYQRML-DSGIAPNKITFVAVLSACA---------HCGKVDEGQEYFNT 472

Query: 275 MKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           MK       +   ++ M+    R G  E+A      M     K   V W+A++   A R 
Sbjct: 473 MKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAM---PYKPGSVAWAALLG--ACRK 527

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           H + AL      +   ++P   T   +L+
Sbjct: 528 HKNMALAERAANELMVMQPLAATPYVMLA 556


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/516 (41%), Positives = 315/516 (61%), Gaps = 10/516 (1%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN--VVTLVSLLSGCASVGALLLGKE 371
           N+   +A +   AQ  H   A+  F         PN    T  S+L  CA +  ++ G++
Sbjct: 54  NIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQK 113

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H    K+          +L V N+LIDMY K   + +AR +FD +  ++R+V  W  MI
Sbjct: 114 IHAMVTKQ------GFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMI 167

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y+QN   +DA+ +F +M QQ   V PN  TL   L ACA L AL  G+ I  ++ R +
Sbjct: 168 AGYAQNEKYSDAIEVF-RMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRRE 226

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             + + F+ N L DMY++ G I  AR VF+ +++R+V+SW+ ++ G  M+G  D+A   F
Sbjct: 227 MALGL-FLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCF 285

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M   G  P+ V F+ LL AC+H+G+V +GL  F++M KE+G+S + EHY C+VDLL R
Sbjct: 286 YEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSR 345

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  LD+A ++I  MPM+P  IIW ALL GCRI+ +   G+     +LEL+S+  GSY  L
Sbjct: 346 AGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYL 405

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           +N+Y++ GR  D A+ R  M+  GV K PGCSW++       FF+GD +HP+S KIY ++
Sbjct: 406 ANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMI 465

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L+ ++K  GY P+T   +H +D+EEK D L  HSEKLA+A+G+++T+ GT IR+ KNL
Sbjct: 466 RELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNL 525

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           RIC DCH A   IS I+  EII+RD +RFHHFK+G+
Sbjct: 526 RICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 184/419 (43%), Gaps = 82/419 (19%)

Query: 50  LTQVYLIHQQIIVQNL--THVPPS----HLIAAYVSH-NAPSPALSLLQRISPSPFSVFW 102
           + QV  I  Q+I   +  + V P+     LI A   H N    AL      SP+   +F 
Sbjct: 1   MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPN---IFA 57

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMR--RGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            NA ++   +     +A + F   +      +PDE+TF  VLKAC  L     G  +HA+
Sbjct: 58  HNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAM 117

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +   GF+SN+FV N+L+ MY +   L  AR LFDEMF     ++V WN ++A YAQ+   
Sbjct: 118 VTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDR-NVVCWNAMIAGYAQNEKY 176

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------------- 260
              + +F  M     V  + V+LV+ L ACA LG    GK                    
Sbjct: 177 SDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNA 236

Query: 261 ------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                 +CG + EA++VF +M+ +DV+SW+ ++ G +  G  ++AF  F           
Sbjct: 237 LADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCF----------- 285

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
                            +E LD       CG +PN V  + LL+ C   G  L+ K  +C
Sbjct: 286 -----------------YEMLD-------CGEKPNDVVFMGLLTACTHAG--LVKKGLNC 319

Query: 375 Y-TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           + T+ +   V       +     ++D+ ++   +D A  M  ++ P   +V  W  ++G
Sbjct: 320 FNTMDKEYGVSPK----VEHYGCVVDLLSRAGELDKAEDMISSM-PMKPNVIIWGALLG 373


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/796 (32%), Positives = 414/796 (52%), Gaps = 46/796 (5%)

Query: 66  THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQ 125
           TH+  + LI+ Y+  N    AL L   + PSP +V  +  LI    + R   +A  LFL+
Sbjct: 98  THLSNA-LISTYLKLNLFPHALRLFLSL-PSP-NVVSYTTLISFLSKHR-QHHALHLFLR 153

Query: 126 MMRRG-WHPDEYTFPFVLKACGELPSS-RCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
           M  R    P+EYT+  VL AC  L      G  +HA    +    + FV NAL+++YA+ 
Sbjct: 154 MTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKH 213

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
            +   A +LF+++ +    DI SWNTI++A  Q    +    LF  M      + D  +L
Sbjct: 214 ASFHAALKLFNQIPRR---DIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTL 270

Query: 244 VNALSACASL-----------------------GTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L+A ASL                       G      + G +++ + +FE M+V+DV
Sbjct: 271 SILLTASASLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDV 330

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           ++W  MVT Y   G    A  +F +M ++N     V+++ V+AG+ +   G EA+ +F +
Sbjct: 331 ITWTEMVTAYMEFGLVNLALKVFDEMPEKNS----VSYNTVLAGFCRNEQGFEAMRLFVR 386

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   GLE    +L S++  C  +G   + K+ H + +K     +G       V  AL+DM
Sbjct: 387 MVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNG------YVEAALLDM 440

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y +C  +  A  MF     +      WT MI  Y++NG   +A+ LF  + + D  V  +
Sbjct: 441 YTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLF-HVGRSDGKVIMD 499

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
               +  L  C  +  L  G+QIH +V++      +  V N ++ MY + G +D A  VF
Sbjct: 500 EVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLE-VGNAVVSMYFKCGSVDDAMKVF 558

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL--YACSHSGM 578
            ++   ++V+W +L++G  MH  GD+A   + +M  EG+ P+ VTF++++  Y  ++  +
Sbjct: 559 GDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNL 618

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           VD     F+SM   + I   + HYA  + +LG    L EA+E I  MP +P+ ++W  LL
Sbjct: 619 VDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLL 678

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           +GCR+H N  +G+ AA  +L LE +   ++ L+SN+Y+ +GRW     +R  M+  G +K
Sbjct: 679 DGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRK 738

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            P  SW+  ++   +F+  DR+HPQ + I   L  L+     +GY P TSF LH+V++  
Sbjct: 739 HPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEEHH 798

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K   LF HS KLA  YGIL T PG PIRI KN+ +CGDCH+ + + S++   +I LRDS+
Sbjct: 799 KKIFLFHHSAKLAATYGILMTKPGKPIRIVKNILLCGDCHAFLKYASIVTKRDIFLRDSS 858

Query: 819 RFHHFKEGSCTCKGYW 834
            FH F  G C+CK  W
Sbjct: 859 GFHCFSNGQCSCKDCW 874



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 246/555 (44%), Gaps = 65/555 (11%)

Query: 127 MRRGWH---PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
           +R G H   P+ ++    L        +    +VHA +     + +  + NAL++ Y + 
Sbjct: 53  LRHGTHYLPPESHSLLHALHVSSRSGDTHLAKTVHATLLKRD-EEDTHLSNALISTYLKL 111

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
           +   +A +LF  +  P   ++VS+ T++ ++         L LF RMT    +  +  + 
Sbjct: 112 NLFPHALRLFLSLPSP---NVVSYTTLI-SFLSKHRQHHALHLFLRMTTRSHLPPNEYTY 167

Query: 244 VNALSACAS-LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
           V  L+AC+S L  +  G Q          F+   V      NA+V+ Y++  SF  A  L
Sbjct: 168 VAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVA-----NALVSLYAKHASFHAALKL 222

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCA 361
           F ++ +     ++ +W+ +I+   Q      A  +FR MQ       +  TL  LL+  A
Sbjct: 223 FNQIPRR----DIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASA 278

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           S   L+ G++ H + +K  L        DL V N LI  Y+K  +VD    +F+ +  + 
Sbjct: 279 S---LMEGQQVHAHAVKLGLET------DLNVGNGLIGFYSKFGNVDDVEWLFEGM--RV 327

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL------------------------- 456
           RDV TWT M+ +Y + G  N AL +F +M +++ +                         
Sbjct: 328 RDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRM 387

Query: 457 ----VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
               ++   F+L+  + AC  L   +  +Q+H + ++  +     +V   L+DMY+R G 
Sbjct: 388 VEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGS-NGYVEAALLDMYTRCGR 446

Query: 513 IDTARVVFD--NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVL 569
           +  A  +F    L++ + V WT+++ GY  +G  ++A + F   R +G +  D V    +
Sbjct: 447 MVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASM 506

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L  C   G +D G K       + G+    E    +V +  +   +D+A+++   MP   
Sbjct: 507 LGLCGTIGHLDMG-KQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTD 565

Query: 630 TPIIWVALLNGCRIH 644
             + W  L++G  +H
Sbjct: 566 I-VTWNTLISGNLMH 579


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/549 (41%), Positives = 331/549 (60%), Gaps = 16/549 (2%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V  YS   S  +A  LF K+ + N+ L    W+ +I  YA  G    A+ ++ QM   G
Sbjct: 99  LVNFYSVCNSLRNAHHLFDKIPKGNLFL----WNVLIRAYAWNGPHETAISLYHQMLEYG 154

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L+P+  TL  +L  C+++  +  G+  H    +RV  +      D+ V  AL+DMYAKC 
Sbjct: 155 LKPDNFTLPFVLKACSALSTIGEGRVIH----ERV--IRSGWERDVFVGAALVDMYAKCG 208

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V  AR +FD I   +RD   W  M+ +Y+QNG  +++L+L  +M    K V+P   TL 
Sbjct: 209 CVVDARHVFDKIV--DRDAVLWNSMLAAYAQNGHPDESLSLCCEM--AAKGVRPTEATLV 264

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + + A +A L  GR+IH +  R+ ++     V   LIDMY++ G +  A V+F+ L++
Sbjct: 265 TVISSSADIACLPHGREIHGFGWRHGFQYNDK-VKTALIDMYAKCGSVKVACVLFERLRE 323

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           + VVSW +++TGY MHGL  +A   F++M KE   PD +TF+  L ACS   ++D+G   
Sbjct: 324 KRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRAL 382

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           ++ M ++  I+   EHY C+VDLLG   +LDEA +LI  M + P   +W ALLN C+ H 
Sbjct: 383 YNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHG 442

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           NVEL E+A  +L+ELE +  G+Y +L+N+YA +G+W+ VAR+R LM   G+KK   CSW+
Sbjct: 443 NVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWI 502

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + K     F  GD +HP S  IY  L  L   ++  GYVP T    HDV+++EK D++  
Sbjct: 503 EVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCS 562

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+A+G+++T PGT + ITKNLRIC DCH AI FIS I   EI +RD NR+HHF+ 
Sbjct: 563 HSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRH 622

Query: 826 GSCTCKGYW 834
           G C+C  YW
Sbjct: 623 GLCSCGDYW 631



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 237/469 (50%), Gaps = 49/469 (10%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           + Y +  +L++C    +   G  +HA +C  G   N+ +   L+  Y+ C++L  A  LF
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D++ +    ++  WN ++ AYA +G  E  + L+ +M  +  ++ D  +L   L AC++L
Sbjct: 117 DKIPKG---NLFLWNVLIRAYAWNGPHETAISLYHQML-EYGLKPDNFTLPFVLKACSAL 172

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
            T   G+   ++ E  +V      +DV    A+V  Y++ G   DA  +F K+    V  
Sbjct: 173 STIGEGR---VIHE--RVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKI----VDR 223

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           + V W++++A YAQ GH  E+L +  +M   G+ P   TLV+++S  A +  L  G+E H
Sbjct: 224 DAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIH 283

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            +  +     +        V  ALIDMYAKC SV VA V+F+ +  + + V +W  +I  
Sbjct: 284 GFGWRHGFQYNDK------VKTALIDMYAKCGSVKVACVLFERL--REKRVVSWNAIITG 335

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+ +G A +AL LF +M ++    +P+  T   AL AC+R   L  GR ++  ++R+   
Sbjct: 336 YAMHGLAVEALDLFERMMKE---AQPDHITFVGALAACSRGRLLDEGRALYNLMVRDC-- 390

Query: 494 MLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS----WTSLMTGYGMHGLGDKA 547
            + P V +  C++D+    G +D A   +D ++Q +V+     W +L+     HG  + A
Sbjct: 391 RINPTVEHYTCMVDLLGHCGQLDEA---YDLIRQMDVMPDSGVWGALLNSCKTHGNVELA 447

Query: 548 HWAFDQMRKEGLAPDGV-TFLVLLYACSHSG-----------MVDQGLK 584
             A +++ +  L PD    +++L    + SG           M+D+G+K
Sbjct: 448 EVALEKLIE--LEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIK 494



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 194/421 (46%), Gaps = 52/421 (12%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  Y   N+   A  L  +I     ++F WN LIR        + A  L+ QM+  G
Sbjct: 97  TKLVNFYSVCNSLRNAHHLFDKIPKG--NLFLWNVLIRAYAWNGPHETAISLYHQMLEYG 154

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD +T PFVLKAC  L +   G  +H  +  SG++ +VFV  AL+ MYA+C  +  AR
Sbjct: 155 LKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDAR 214

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            +FD++      D V WN+++AAYAQ+G  +  L L   M     V+    +LV  +S+ 
Sbjct: 215 HVFDKIVDR---DAVLWNSMLAAYAQNGHPDESLSLCCEMAAK-GVRPTEATLVTVISSS 270

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           A +     G++                          CG ++ A  +FER++ K VVSWN
Sbjct: 271 ADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWN 330

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QF 343
           A++TGY+  G   +A  LF++M +E  + + +T+   +A  ++     E   ++  M + 
Sbjct: 331 AIITGYAMHGLAVEALDLFERMMKE-AQPDHITFVGALAACSRGRLLDEGRALYNLMVRD 389

Query: 344 CGLEPNV---VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           C + P V     +V LL  C        G+    Y + R + V    PD   V  AL++ 
Sbjct: 390 CRINPTVEHYTCMVDLLGHC--------GQLDEAYDLIRQMDV---MPDS-GVWGALLNS 437

Query: 401 YAKCKSVDVARVMFDA-IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
                +V++A V  +  I  +  D   + ++   Y+Q+G       L   M   DK +K 
Sbjct: 438 CKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMI--DKGIKK 495

Query: 460 N 460
           N
Sbjct: 496 N 496



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 443 ALALFPQMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF--- 498
           A  L PQ         P N +  +  L +C    AL  G+Q+HA +     ++ I +   
Sbjct: 39  ATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLC----QLGIAYNLD 94

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           +A  L++ YS    +  A  +FD + + N+  W  L+  Y  +G  + A   + QM + G
Sbjct: 95  LATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG 154

Query: 559 LAPDGVTFLVLLYACSHSGMVDQG 582
           L PD  T   +L ACS    + +G
Sbjct: 155 LKPDNFTLPFVLKACSALSTIGEG 178


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/686 (35%), Positives = 383/686 (55%), Gaps = 42/686 (6%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYA--RCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
             +HA    +   ++ FV + L+A+Y+  + + L YAR +FD + +     ++ WNTI+ 
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRR---SLIHWNTIIK 86

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
            Y ++  +  G++LF  +  +     D  +L   +  CA LG    GKQ   +       
Sbjct: 87  CYVENQFSHDGIVLFHELVHEY--LPDNFTLPCVIKGCARLGVVQEGKQIHGLA------ 138

Query: 273 ERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
             +K+    DV    ++V  YS+ G  + A  +F  M    +  +VV W+++I GYA+ G
Sbjct: 139 --LKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGM----IDKDVVLWNSLIDGYARCG 192

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
               AL +F +M     E +  +   L+ G +  G +   ++            D     
Sbjct: 193 EIDIALQLFEEMP----ERDAFSWTVLVDGLSKCGKVESARKL----------FDQMPCR 238

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           +L+  NA+I+ Y K    D A  +F  +     D+ TW +MI  Y  NG   DA+ +F  
Sbjct: 239 NLVSWNAMINGYMKSGDFDSALELFYQMPI--WDLVTWNLMIAGYELNGQFMDAVKMFFM 296

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M +     +P+  TL   L A + LA L  GR IH+Y+ +N +E L   +   LI+MY++
Sbjct: 297 MLKLGS--RPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFE-LDGILGTSLIEMYAK 353

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G I++A  VF  ++++ V  WT+++ G G+HG+ + A   F +M K GL P+ + F+ +
Sbjct: 354 CGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGV 413

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L AC+H+G+VD G +YFD M  E+ I    EHY C+VD+L RA  L+EA   IE MP+ P
Sbjct: 414 LNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISP 473

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
             +IW++LL G R H  +++GE AA R++E+  E  G Y LLSN+YA +G W+ V+ +R 
Sbjct: 474 NKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVRE 533

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           +M   G +K PGCS V+ K     F VGD +HPQ+++IY  ++ + +++K +G+VP T+ 
Sbjct: 534 MMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQ 593

Query: 750 ALHDVDDE-EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
            L  ++ E EK   L  HSE+LA+A+G++   PG PIRI KNLR+C DCHS    +S I 
Sbjct: 594 VLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIY 653

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
           + EII+RD+ RFHHFK GSC+C  YW
Sbjct: 654 SREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 167/515 (32%), Positives = 264/515 (51%), Gaps = 52/515 (10%)

Query: 71  SHLIAAYVSH--NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
           S L+A Y     N    A S+  RI     S+  WN +I+  V  +   +   LF +++ 
Sbjct: 49  SRLLALYSDPKINDLGYARSIFDRIQRR--SLIHWNTIIKCYVENQFSHDGIVLFHELVH 106

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
             + PD +T P V+K C  L   + G  +H +    GF S+VFV  +L+ MY++C  +  
Sbjct: 107 E-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC 165

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS---LVN 245
           AR++FD M      D+V WN+++  YA+ G+ +  L LF  M      + D  S   LV+
Sbjct: 166 ARKVFDGMIDK---DVVLWNSLIDGYARCGEIDIALQLFEEMP-----ERDAFSWTVLVD 217

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            LS            +CG +E A+K+F++M  +++VSWNAM+ GY + G F+ A  LF +
Sbjct: 218 GLS------------KCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQ 265

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M       ++VTW+ +IAGY   G   +A+ +F  M   G  P+  TLVS+LS  + +  
Sbjct: 266 MP----IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L  G+  H Y  K    +DG      ++  +LI+MYAKC  ++ A  +F AI  K   V 
Sbjct: 322 LGKGRWIHSYMEKNGFELDG------ILGTSLIEMYAKCGCIESALTVFRAIQKKK--VG 373

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            WT +I     +G AN ALALF +M +    +KPNA      L AC     +  GRQ + 
Sbjct: 374 HWTAIIVGLGIHGMANHALALFLEMCKTG--LKPNAIIFIGVLNACNHAGLVDDGRQ-YF 430

Query: 486 YVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
            ++ N+Y+ + P + +  CL+D+  R+G ++ A+   +N+    N V W SL+ G   HG
Sbjct: 431 DMMMNEYK-IEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 489

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLL---YACS 574
             D   +A  ++ +  +AP+ +   +LL   YA S
Sbjct: 490 KIDIGEYAAQRVIE--VAPETIGCYILLSNMYAAS 522


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/691 (34%), Positives = 382/691 (55%), Gaps = 24/691 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           +N LI    +    ++A  +F +M   G  PD  T   +L AC  L   + G+ +H+ + 
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G  S+  +  +L+ +Y +C  +  A  +F+   +    ++V WN ++ A+ Q  D   
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT---NVVLWNLMLVAFGQINDLAK 328

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF +M     ++ +  +    L  C        G+Q   +   K  FE     D+  
Sbjct: 329 SFELFCQMQA-AGIRPNQFTYPCILRTCTCTREIDLGEQIHSLS-VKTGFE----SDMYV 382

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
              ++  YS+ G  E A  + + +++++V    V+W+++IAGY Q     +AL  F++MQ
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDV----VSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
            CG+ P+ + L S +SGCA + A+  G + H       + V G +  D+ + NAL+++YA
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHAR-----IYVSG-YSGDVSIWNALVNLYA 492

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  +  A   F+ +  K  D  T   ++  ++Q+G   +AL +F +M Q    VK N F
Sbjct: 493 RCGRIREAFSSFEEMELK--DGITGNGLVSGFAQSGLHEEALKVFMRMDQSG--VKHNVF 548

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T   AL A A LA ++ G+QIHA V++  +      V N LI +Y + G  + A++ F  
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETE-VGNALISLYGKCGSFEDAKMEFSE 607

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           + +RN VSW +++T    HG G +A   FDQM+KEG+ P+ VTF+ +L ACSH G+V++G
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YF SMS E+GI  R +HYAC++D+ GRA +LD A + IE MP+    ++W  LL+ C+
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H N+E+GE AA  LLELE     SY LLSN YA   +W +  ++R +M+  GV+K PG 
Sbjct: 728 VHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGR 787

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ K     FFVGDR HP +++IY  LA +  R+  +GY  +     HD + E +   
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPT 847

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
              HSEKLA+ +G+++  P  P+R+ KNLR+
Sbjct: 848 DLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 256/514 (49%), Gaps = 26/514 (5%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKAC-GELPSSRCGSSVHAVICSSGFDSNVFVCN 174
           P     LF    R+        F   L+AC G     +    +HA   + G      V N
Sbjct: 22  PAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGN 81

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
            L+ +Y++   +  AR++F+E+      D VSW  +++ YAQ+G  E  L L+ +M    
Sbjct: 82  LLIDLYSKNGLVLPARRVFEEL---SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAG 138

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
            V    V L + LS+C     +++G+         + ++     ++   NA++T Y R G
Sbjct: 139 VVPTPYV-LSSVLSSCTKAELFAQGRLI-----HAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           SF  A  +F  M   +     VT++ +I+G+AQ GHG  AL++F +MQF GL P+ VT+ 
Sbjct: 193 SFRLAERVFCDMPHRDT----VTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           SLL+ CAS+G L  G + H Y  K  +S       D ++  +L+D+Y KC  V+ A V+F
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGIS------SDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           ++    N  V  W +M+ ++ Q      +  LF QM  Q   ++PN FT  C L  C   
Sbjct: 303 NSSDRTN--VVLWNLMLVAFGQINDLAKSFELFCQM--QAAGIRPNQFTYPCILRTCTCT 358

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             +  G QIH+  ++  +E  + +V+  LIDMYS+ G ++ AR V + LK+++VVSWTS+
Sbjct: 359 REIDLGEQIHSLSVKTGFESDM-YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + GY  H     A  AF +M+K G+ PD +     +  C+    + QGL+    +    G
Sbjct: 418 IAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-G 476

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
            S     +  +V+L  R  R+ EA    E M ++
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 162/592 (27%), Positives = 278/592 (46%), Gaps = 30/592 (5%)

Query: 56  IHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH + + + L    +  + LI  Y  +    PA  + + +S        W A++    + 
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSAR--DNVSWVAMLSGYAQN 121

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC 173
            L + A  L+ QM R G  P  Y    VL +C +      G  +HA     GF S +FV 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           NA++ +Y RC +   A ++F +M      D V++NT+++ +AQ G  E  L +F  M   
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHR---DTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
             +  D V++ + L+ACASLG   +G Q         +F+     D +   +++  Y + 
Sbjct: 239 -GLSPDCVTISSLLAACASLGDLQKGTQL-----HSYLFKAGISSDYIMEGSLLDLYVKC 292

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  E A  +F      + + NVV W+ ++  + Q     ++ ++F QMQ  G+ PN  T 
Sbjct: 293 GDVETALVIF----NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
             +L  C     + LG++ H       LSV      D+ V   LIDMY+K   ++ AR +
Sbjct: 349 PCILRTCTCTREIDLGEQIHS------LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRV 402

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
            + +  K +DV +WT MI  Y Q+    DALA F +M  Q   + P+   L+ A+  CA 
Sbjct: 403 LEML--KEKDVVSWTSMIAGYVQHECCKDALAAFKEM--QKCGIWPDNIGLASAISGCAG 458

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           + A+R G QIHA +  + Y   +  + N L+++Y+R G I  A   F+ ++ ++ ++   
Sbjct: 459 INAMRQGLQIHARIYVSGYSGDVS-IWNALVNLYARCGRIREAFSSFEEMELKDGITGNG 517

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           L++G+   GL ++A   F +M + G+  +  TF+  L A ++   + QG K   +   + 
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQG-KQIHARVIKT 576

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           G S   E    ++ L G+    ++A      M  E   + W  ++  C  H 
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/711 (36%), Positives = 394/711 (55%), Gaps = 45/711 (6%)

Query: 136 YTFPFVLKACGELPSSRCGSSVH--AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +T+  + +AC    S   G ++H    + +   D N+F+ N ++ MYA+C +L YA Q+F
Sbjct: 64  HTYAALFQACARRSSLPEGQALHRHMFLHNPNSDFNLFLTNHVVNMYAKCGSLDYAHQMF 123

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           DEM +    +IVSW  +V+ YAQ G +     +F  M   +  Q    +  + +SAC   
Sbjct: 124 DEMPEK---NIVSWTALVSGYAQHGRSNECFRVFRGML--IWHQPTEFAFASVISACG-- 176

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVK 312
           G  + G+Q   +   K  F+      V   NA++  Y +  G  ++A+ +++ M   N+ 
Sbjct: 177 GDDNCGRQVHALA-LKTSFDSC----VYVGNALIMMYCKSCGGADEAWNVYEAMGFRNL- 230

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG-ALLLGKE 371
              V+W+++IAG+   G G+ AL++F QM   G+  +  TLVS+ S    +G  L    +
Sbjct: 231 ---VSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQ 287

Query: 372 THCYTIKR--VLSVDGSHPDDLMVINALIDMYAKC--KSVDVARVMFDAIAPKNRDVATW 427
             C TIK   +L ++        V  AL+  Y+    +  D  R+  +      +DV +W
Sbjct: 288 LQCLTIKTGFILKIE--------VATALVKAYSSLGGEVSDCYRIFLEL--DGRQDVVSW 337

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
           T +I ++++      AL +F Q  ++   + P+    S  L ACA LA  R    + ++V
Sbjct: 338 TGIIAAFAERD-PKKALVIFRQFLRE--CLAPDRHMFSIVLKACAGLATERHALTVQSHV 394

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           L+  +E  I  +AN LI   +R G +  ++ VFD +  R+ VSW S++  Y MHG G +A
Sbjct: 395 LKVGFEDDI-VLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEA 453

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              F QM  +   PDG TF+ LL ACSH+GM ++G K F++MS   GI  + +HYAC+VD
Sbjct: 454 LLLFSQMDAQ---PDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVD 510

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           +LGRA ++ EA ELI+ MPMEP  ++W ALL  CR H   +L +LAA +L EL+      
Sbjct: 511 ILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLG 570

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y L+SNI+   GR+ +   IR  M+   V+K PG SW++       F  G + HP+ + I
Sbjct: 571 YVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAI 630

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA----PGT 783
              L  LV+R+K +GYVPQ S ALHD++DE K + L+ HSEKLALA+ ++        G 
Sbjct: 631 CARLEELVRRLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKLALAFALMNVGSICCSGN 690

Query: 784 PIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I+I KN+RIC DCH+ +   S +++ EI++RDSNRFHHFK   C+C  YW
Sbjct: 691 TIKIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW 741



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 266/570 (46%), Gaps = 57/570 (10%)

Query: 21  HLFTNIKLFSVTTTPCIKITS-----LLLRQC---KSLTQVYLIHQQIIVQN----LTHV 68
           HL   +KLF   T P   + S      L + C    SL +   +H+ + + N        
Sbjct: 42  HLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFLHNPNSDFNLF 101

Query: 69  PPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
             +H++  Y    +   A  +   +     ++  W AL+    +    +  FR+F  M+ 
Sbjct: 102 LTNHVVNMYAKCGSLDYAHQMFDEMPEK--NIVSWTALVSGYAQHGRSNECFRVFRGMLI 159

Query: 129 RGWH-PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR-CDTL 186
             WH P E+ F  V+ ACG      CG  VHA+   + FDS V+V NAL+ MY + C   
Sbjct: 160 --WHQPTEFAFASVISACG--GDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGA 215

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVN 245
             A  +++ M   G  ++VSWN+++A +   G     L LF++M  G ++   D  +LV+
Sbjct: 216 DEAWNVYEAM---GFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRF--DRATLVS 270

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI-GSFEDAFALFK 304
             S    +G    G +C    +   +     +K  V+  A+V  YS + G   D + +F 
Sbjct: 271 IFSCLCGMGD---GLECCFQLQCLTIKTGFILKIEVA-TALVKAYSSLGGEVSDCYRIFL 326

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           ++   + + +VV+W+ +IA +A+R    +AL +FRQ     L P+      +L  CA   
Sbjct: 327 EL---DGRQDVVSWTGIIAAFAERD-PKKALVIFRQFLRECLAPDRHMFSIVLKACAG-- 380

Query: 365 ALLLGKETHCYTIK-RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
              L  E H  T++  VL V     DD+++ NALI   A+C SV +++ +FD +   +RD
Sbjct: 381 ---LATERHALTVQSHVLKV--GFEDDIVLANALIHACARCGSVALSKQVFDKMG--SRD 433

Query: 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483
             +W  M+ +Y+ +G   +AL LF QM  Q     P+  T    L AC+       G +I
Sbjct: 434 TVSWNSMLKAYAMHGQGKEALLLFSQMDAQ-----PDGATFVALLSACSHAGMAEEGAKI 488

Query: 484 HAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGM 540
              +  N    ++P + +  C++D+  R+G I  A+ + D +  + + V W++L+     
Sbjct: 489 FETMSNNH--GIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRK 546

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           HG    A  A  ++++  L P+     VL+
Sbjct: 547 HGETKLAKLAAVKLKE--LDPNNSLGYVLM 574


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/665 (38%), Positives = 365/665 (54%), Gaps = 72/665 (10%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARC--DTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +H+ I  +G  +  F  + L+   A      LSYA  LF+ + QP   +   WNT++   
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQP---NQFIWNTMIRGN 107

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC------------ 262
           + S    G +  + RM     V+ +  +    L +CA +G    GKQ             
Sbjct: 108 SLSSSPVGAIDFYVRML-LCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESD 166

Query: 263 --------------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                         G +  A+ VF +  ++D VS+ A++TGY+  G  +DA  LF+++  
Sbjct: 167 PFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPV 226

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
            +     V+W+A+IAGYAQ G   EAL  F++M+   + PN  T+V++LS CA  G+L L
Sbjct: 227 RDA----VSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLEL 282

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G     +     L        +L ++NALIDMY+KC  +D AR +F+ I  K  D+ +W 
Sbjct: 283 GNWVRSWIEDHGLG------SNLRLVNALIDMYSKCGDLDKARDLFEGICEK--DIISWN 334

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
           VMIG YS      +ALALF +M Q +  V+PN  T    L ACA L AL  G+ IHAY+ 
Sbjct: 335 VMIGGYSHMNSYKEALALFRKMQQSN--VEPNDVTFVSILPACAYLGALDLGKWIHAYID 392

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +    +    +   LIDMY++ G+I+ A+ VF  +K +++ SW ++++G  MHG  + A 
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F QMR EG  PD +TF+ +L ACSH+G+V+ G + F SM +++ IS + +HY C++DL
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGRA   DEA  L++ M M+P   IW +LL  CR+H NVELGE AA  L ELE E  G+Y
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LLSNIYA AGRW DVARIR+ +   G+KK                          Q IY
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKK-------------------------XQDIY 607

Query: 729 EILAGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
           ++L  + Q   +  G VP TS  L+D+D+E K   L  HSEKLA+A+G+++T P T IRI
Sbjct: 608 KMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRI 667

Query: 788 TKNLR 792
            KNLR
Sbjct: 668 VKNLR 672



 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 192/654 (29%), Positives = 296/654 (45%), Gaps = 142/654 (21%)

Query: 29  FSVTTTPCIKI-----TSLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIA--AYVS 79
           F  T+ P  K+     +  LL  CKS   +  IH QII   L  T    S LI   A   
Sbjct: 19  FQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISP 78

Query: 80  HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
               S AL L + I     + F WN +IR       P  A   +++M+  G  P+ YTFP
Sbjct: 79  FGNLSYALLLFESIEQP--NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFP 136

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY----------- 188
           F+LK+C ++ +++ G  +H  +   G +S+ FV  +L+ MYA+   L Y           
Sbjct: 137 FLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLR 196

Query: 189 --------------------ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
                               AR+LF+E+    + D VSWN ++A YAQSG  E  L  F 
Sbjct: 197 DAVSFTALITGYTLRGCLDDARRLFEEI---PVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 229 RMTGDVKVQGDGVSLVNALSACA-----SLGTWSRG---------------------KQC 262
            M     V  +  ++V  LSACA      LG W R                       +C
Sbjct: 254 EMK-RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC 312

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +++A+ +FE +  KD++SWN M+ GYS + S+++A ALF+KM+Q NV           
Sbjct: 313 GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV----------- 361

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                                   EPN VT VS+L  CA +GAL LGK  H Y  K+ L 
Sbjct: 362 ------------------------EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLG 397

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +  +      +  +LIDMYAKC +++ A+ +F  + PK+  + +W  MI   + +G AN 
Sbjct: 398 LTNTS-----LWTSLIDMYAKCGNIEAAKQVFAGMKPKS--LGSWNAMISGLAMHGHANM 450

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN- 501
           AL LF QM  +D+  +P+  T    L AC+    +  GRQ  + ++ + Y+ + P + + 
Sbjct: 451 ALELFRQM--RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVED-YD-ISPKLQHY 506

Query: 502 -CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG---LGDKAHWAFDQMRK 556
            C+ID+  R+G  D A  +  N++ + +   W SL+    +HG   LG+ A     ++  
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEP 566

Query: 557 EGLAPDGVTFLVLLYACS---------HSGMVDQGL-------KYFDSMSKEFG 594
           E   P     L  +YA +          + + D+G+       K  D + + FG
Sbjct: 567 EN--PGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKXQDIYKMLDEIDQSFG 618


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/706 (34%), Positives = 401/706 (56%), Gaps = 29/706 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           ++ A VS  A +  LS  +R+   S        WN+++             +LF +M   
Sbjct: 199 IVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMT 258

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G   + YT    L AC     ++ G  +HA +  S     V+VCNAL+AMYARC  +  A
Sbjct: 259 GPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEA 318

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
            ++   M      D+V+WN+++  Y Q+   +  L  F  M      + D VSL + ++A
Sbjct: 319 GRILRLMNNA---DVVTWNSLIKGYVQNLMYKEALQFFCDMIA-AGHKPDEVSLTSVIAA 374

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
              L     G     ME    V +     +++  N ++  YS+          F  M ++
Sbjct: 375 SGRLSNLLAG-----MELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEK 429

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           ++    ++W+ +IAGYA      EAL +FR +    +E + + L S+L  C+ + ++L+ 
Sbjct: 430 DL----ISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIV 485

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           KE HC+ +++ L        D ++ N L+D+Y KC+++  A  +F++I  K +DV +WT 
Sbjct: 486 KEIHCHILRKGLI-------DTVIQNELVDVYGKCRNMGYASRVFESI--KGKDVVSWTS 536

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI S + NG  N+A+ LF +M +   L   ++  L C L A A L+AL+ GR+IH Y+LR
Sbjct: 537 MISSSALNGNENEAVELFRRMAETGLLA--DSVALLCILSAAASLSALKKGREIHGYLLR 594

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
             +  L   +A  ++DMY+  GD+ +A+ VFD ++++ ++ +TS++  YGMHG G  +  
Sbjct: 595 KGF-CLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVE 653

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            F++MR E ++PD ++FL LLYACSH+G++D+G ++   M  E+ +    EHY C+VD+L
Sbjct: 654 LFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDML 713

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
           GRAN + EA E ++ M  EPT  +W ALL  CR H+  E+GE+AA RLLELE +  G+  
Sbjct: 714 GRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLV 773

Query: 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE 729
           L+SN++A  GRW DV ++R+ MK +G++K PGCSW++       F   D++HP++++IYE
Sbjct: 774 LVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPETKEIYE 833

Query: 730 ILAGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
            L+ + +++ +  GY+  T F LH+VD+ EK  +L  HSE+LA+AY
Sbjct: 834 KLSEVTRKLERESGYLADTKFILHNVDEGEKVQMLHGHSERLAIAY 879



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 248/473 (52%), Gaps = 28/473 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           + F WNALI   V    P +A  ++  M   G   D Y+FP +LKACG+L   R G+ +H
Sbjct: 126 TAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRDIRSGTELH 185

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            ++   GF+S  F+ NAL++MYA+ D LS A++LFD   + G  D V WN+I+++Y+ SG
Sbjct: 186 CMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKG--DAVLWNSILSSYSTSG 243

Query: 219 DAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            +   L LF   +MTG      +  ++V+AL+AC        GK     E    V +   
Sbjct: 244 KSLETLQLFREMQMTGPA---SNSYTIVSALTACEGFSYAKLGK-----EIHAAVLKSTH 295

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             +V   NA++  Y+R G   +A  + + M       +VVTW+++I GY Q     EAL 
Sbjct: 296 SFEVYVCNALIAMYARCGKMLEAGRILRLMNNA----DVVTWNSLIKGYVQNLMYKEALQ 351

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F  M   G +P+ V+L S+++    +  LL G E H Y IK           +L+V N 
Sbjct: 352 FFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKH------GWDSNLLVGNT 405

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LIDMY+KC         F  +    +D+ +WT +I  Y+ N    +AL LF  + +  K 
Sbjct: 406 LIDMYSKCNLTCYMGRAF--LMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAK--KR 461

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           ++ +   L   L AC+ L ++   ++IH ++LR    ++   + N L+D+Y +  ++  A
Sbjct: 462 MEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKG--LIDTVIQNELVDVYGKCRNMGYA 519

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
             VF+++K ++VVSWTS+++   ++G  ++A   F +M + GL  D V  L +
Sbjct: 520 SRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCI 572



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+++  K +++   +V FD +  ++R    W  +IG+Y  NG    AL ++  M  +   
Sbjct: 103 LLELCGKSRALSQEKV-FDEM--RDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEG-- 157

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V  + ++    L AC +L  +R G ++H  +++  +     F+ N L+ MY+++  +  A
Sbjct: 158 VPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNS-TGFIVNALVSMYAKTDHLSAA 216

Query: 517 RVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           + +FD  +++ + V W S+++ Y   G   +    F +M+  G A +  T +  L AC  
Sbjct: 217 KRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEG 276

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPII 633
                 G +   ++ K    +   E Y C  ++ +  R  ++ EA  ++  M      + 
Sbjct: 277 FSYAKLGKEIHAAVLKS---THSFEVYVCNALIAMYARCGKMLEAGRILRLMN-NADVVT 332

Query: 634 WVALLNG 640
           W +L+ G
Sbjct: 333 WNSLIKG 339



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 2/161 (1%)

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD ++ R   +W +L+  Y  +G    A + +  MR EG+  D  +F VLL AC     
Sbjct: 118 VFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRD 177

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +  G +    M  + G ++       +V +  + + L  A  L +    +   ++W ++L
Sbjct: 178 IRSGTE-LHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSIL 236

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           +         L  L   R +++      SYT++S + A  G
Sbjct: 237 SSYSTSGK-SLETLQLFREMQMTGPASNSYTIVSALTACEG 276


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/749 (32%), Positives = 395/749 (52%), Gaps = 98/749 (13%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + L+  Y   + P  A+ L  R+     +VF W A++    R+   ++A   F++M   G
Sbjct: 120 TKLVVFYAKCDFPEVAVRLFHRLRVR--NVFSWAAIVGLQCRMGFSEDALLGFIEMQENG 177

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD +  P VLKACG L     G  VH  +   GF + VFV ++L+ MY +C  L  AR
Sbjct: 178 VFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDAR 237

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNAL 247
           ++FD M +    ++V+WN+++  Y Q+G  +  + +F     D++V+G     V++ + L
Sbjct: 238 KVFDSMVEK---NVVTWNSMIVGYVQNGLNQEAIDVFY----DMRVEGIEPTRVTVASFL 290

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           SA A+L     GKQ      A  +   + + +++  ++++  YS++G  EDA  +F +M 
Sbjct: 291 SASANLDALIEGKQG----HAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRML 345

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           +++V    VTW+ +I+ Y Q     +AL++   M+   L  + VTL S+LS  A    + 
Sbjct: 346 EKDV----VTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIK 401

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LGKE HCY I+R L        D++V N++IDMYAKC+ +D AR +FD  +   RD+  W
Sbjct: 402 LGKEGHCYCIRRNLE------SDVVVANSIIDMYAKCERIDDARKVFD--STTERDLVLW 453

Query: 428 TVMIGSYSQ-----------------------------------NGGANDALALFPQM-- 450
             ++ +Y+Q                                   NG  N+A  +F QM  
Sbjct: 454 NTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQS 513

Query: 451 -----------------------------FQ--QDKLVKPNAFTLSCALMACARLAALRF 479
                                        FQ  Q+  ++P+  +++  L+AC  + +L +
Sbjct: 514 LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWY 573

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           GR IH ++ R+++ + +P VA  L+DMY++ G ID A+ VF  +  + +  + ++++ Y 
Sbjct: 574 GRAIHGFITRHEFCLSVP-VATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYA 632

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
           +HG   +A   F  ++KEG+ PD +TF  +L ACSH+G+V++GL  F  M  +  ++   
Sbjct: 633 LHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIM 692

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
           EHY C+V LL R   LDEA+ LI  MP +P   I  +LL  CR H  +ELGE  +  L +
Sbjct: 693 EHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFK 752

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           LE    G+Y  LSN YA AGRW +V+ +R LMK  G++K PGCSW+Q       F  GD 
Sbjct: 753 LEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDG 812

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTS 748
           +HP++++IY +LA L+  ++ MGYVP  S
Sbjct: 813 SHPKTEEIYAMLAMLLSEMRFMGYVPIAS 841



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 164/639 (25%), Positives = 270/639 (42%), Gaps = 161/639 (25%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSG--FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
           +L+ C    +   G  +HA I  +G  F  N +V   L+  YA+CD    A +LF  +  
Sbjct: 85  LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRL-- 142

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
             + ++ SW  IV    + G +E  L+ F  M  +  V  D   L N L AC SL     
Sbjct: 143 -RVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQEN-GVFPDNFVLPNVLKACGSLQLIGL 200

Query: 259 GK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           GK                          +CG++E+A+KVF+ M  K+VV+WN+M+ GY +
Sbjct: 201 GKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQ 260

Query: 293 IGSFEDAFALFKKMRQENVK-----------------------------------LNVVT 317
            G  ++A  +F  MR E ++                                   L+ + 
Sbjct: 261 NGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNIL 320

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV-------------------------- 351
            S++I  Y++ G   +A  VF +M    LE +VV                          
Sbjct: 321 GSSIINFYSKVGLIEDAELVFSRM----LEKDVVTWNLLISSYVQHHQVGKALNMCHLMR 376

Query: 352 ---------TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
                    TL S+LS  A    + LGKE HCY I+R L        D++V N++IDMYA
Sbjct: 377 SENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLE------SDVVVANSIIDMYA 430

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC+ +D AR +FD+     RD+  W  ++ +Y+Q G + +AL LF QM  Q   V PN  
Sbjct: 431 KCERIDDARKVFDSTT--ERDLVLWNTLLAAYAQVGLSGEALKLFYQM--QFDSVPPNVI 486

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           +                                     N +I  + R+G ++ A+ +F  
Sbjct: 487 SW------------------------------------NSVILGFLRNGQVNEAKDMFSQ 510

Query: 523 LK----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           ++    Q N+++WT+L++G    G G +A   F +M++ G+ P   +   +L AC+    
Sbjct: 511 MQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPS 570

Query: 579 VDQGLKYFDSMSK-EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +  G      +++ EF +S        +VD+  +   +DEA ++   M  +  P I+ A+
Sbjct: 571 LWYGRAIHGFITRHEFCLSVPVA--TSLVDMYAKCGSIDEAKKVFHMMSSKELP-IYNAM 627

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           ++   +H    +  LA  + L+ E  +  S T  S + A
Sbjct: 628 ISAYALHGQA-VEALALFKHLQKEGIEPDSITFTSILSA 665



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I S  ++G   +++ L  +M  +D  + P  +     L  C    AL  G+QIHA +L+N
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIY--GELLQGCVYERALHTGQQIHARILKN 108

Query: 491 -QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549
             +     +V   L+  Y++    + A  +F  L+ RNV SW +++      G  + A  
Sbjct: 109 GDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALL 168

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            F +M++ G+ PD      +L AC    ++  G K       + G  A     + +VD+ 
Sbjct: 169 GFIEMQENGVFPDNFVLPNVLKACGSLQLIGLG-KGVHGYVLKMGFGACVFVSSSLVDMY 227

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           G+   L++A ++ + M +E   + W +++ G
Sbjct: 228 GKCGVLEDARKVFDSM-VEKNVVTWNSMIVG 257


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 326/546 (59%), Gaps = 16/546 (2%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y + G  + A  LF +M   NV    V W+AV+      G   E ++ +  ++  G  PN
Sbjct: 57  YFKTGRLKLARHLFGEMPNRNV----VAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPN 112

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
           VV+  +  + CA    L LG++ H + +K    +D S      V+N+++D Y KC+    
Sbjct: 113 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS------VLNSMVDFYGKCRCAGK 166

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           AR +FD +  +N    +W  M+ +Y+QNG   +A A +    +  +  +P  F +S AL 
Sbjct: 167 ARAVFDGMGVRNS--VSWCSMVAAYAQNGAEEEAFAAYLGARRSGE--EPTDFMVSSALT 222

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            CA L  L  GR +HA  +R+  +  I FVA+ L+DMY + G ++ A  +F    QRN+V
Sbjct: 223 TCAGLLGLHLGRALHAVAVRSCIDANI-FVASALVDMYGKCGCVEDAEQIFYETPQRNLV 281

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           +W +++ GY   G    A   FD M + G  AP+ +T + ++ +CS  G+   G + F++
Sbjct: 282 TWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFET 341

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M + FGI  R EHYAC+VDLLGRA   ++A E+I+GMPM P+  +W ALL  C++H   E
Sbjct: 342 MRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTE 401

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           LG +AA +L EL+ +  G++ LLSN++A+AGRW +   IR  MK+ G+KK PGCSWV  K
Sbjct: 402 LGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWK 461

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F   D  H    +I  +L+ L ++++A GY+P T ++L+D+++EEK   +F+HSE
Sbjct: 462 NVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSE 521

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLALA+G++   PG PIRI KNLRIC DCH A  FIS I+  EII+RD+NRFHHFK+  C
Sbjct: 522 KLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQC 581

Query: 829 TCKGYW 834
           +C  YW
Sbjct: 582 SCGDYW 587



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 190/427 (44%), Gaps = 39/427 (9%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPS-SRCGSSVHAVICSSGF-DSNVFVCNALMAMYARC 183
           M+R G  P+++TFP   KA    P  S  G  +H++    G+   + FV  A + MY + 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             L  AR LF EM      ++V+WN ++      G     L       G  +  G    L
Sbjct: 61  GRLKLARHLFGEMPNR---NVVAWNAVMTNAVLDGRP---LETIEAYFGLREAGG----L 110

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFED 298
            N +SACA     +      + E+    F    VK     DV   N+MV  Y +      
Sbjct: 111 PNVVSACAFFNACAGAMYLSLGEQ----FHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGK 166

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A A+F  M       N V+W +++A YAQ G   EA   +   +  G EP    + S L+
Sbjct: 167 ARAVFDGMGVR----NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALT 222

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA +  L LG+  H   ++  +        ++ V +AL+DMY KC  V+ A  +F    
Sbjct: 223 TCAGLLGLHLGRALHAVAVRSCIDA------NIFVASALVDMYGKCGCVEDAEQIF--YE 274

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
              R++ TW  MIG Y+  G A +AL +F  M +  +   PN  TL   + +C+R    +
Sbjct: 275 TPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGE-TAPNYITLVNVITSCSRGGLTK 333

Query: 479 FGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLM 535
            G ++    +R ++  + P   +  C++D+  R+G  + A  V   +  R  +S W +L+
Sbjct: 334 DGYELFE-TMRERFG-IEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 391

Query: 536 TGYGMHG 542
               MHG
Sbjct: 392 GACKMHG 398



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 36/280 (12%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNA++  AV    P      +  +   G  P+  +      AC        G   H
Sbjct: 77  NVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFH 136

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   GF+ +V V N+++  Y +C     AR +FD M   G+ + VSW ++VAAYAQ+G
Sbjct: 137 GFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGM---GVRNSVSWCSMVAAYAQNG 193

Query: 219 DAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------- 260
             E     +  AR +G+   +     + +AL+ CA L     G+                
Sbjct: 194 AEEEAFAAYLGARRSGE---EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIF 250

Query: 261 ----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM-RQE 309
                     +CG +E+A+++F     +++V+WNAM+ GY+ IG  ++A  +F  M R  
Sbjct: 251 VASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSG 310

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEP 348
               N +T   VI   ++ G   +  ++F  M +  G+EP
Sbjct: 311 ETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEP 350



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 22/252 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +++    +    + AF  +L   R G  P ++     L  C  L     G ++HAV  
Sbjct: 182 WCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAV 241

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S  D+N+FV +AL+ MY +C  +  A Q+F E  Q    ++V+WN ++  YA  GDA+ 
Sbjct: 242 RSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQR---NLVTWNAMIGGYAHIGDAQN 298

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L++F  M    +   + ++LVN +++C      SRG   G+ ++  ++FE M+ +  + 
Sbjct: 299 ALLVFDDMIRSGETAPNYITLVNVITSC------SRG---GLTKDGYELFETMRERFGIE 349

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  +V    R G  E A+ + + M    ++ ++  W A++   A + HG   L  
Sbjct: 350 PRTEHYACVVDLLGRAGMEEQAYEVIQGM---PMRPSISVWGALLG--ACKMHGKTELGR 404

Query: 338 FRQMQFCGLEPN 349
               +   L+P 
Sbjct: 405 IAAEKLFELDPQ 416



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 3/183 (1%)

Query: 457 VKPNAFTLSCALMACARLAALR-FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           ++PN FT   A  A A        G QIH+  +R  Y  + PFV+   +DMY ++G +  
Sbjct: 6   LRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKL 65

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           AR +F  +  RNVV+W ++MT   + G   +   A+  +R+ G  P+ V+      AC+ 
Sbjct: 66  ARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAG 125

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           +  +  G + F     + G          +VD  G+     +A  + +GM +  + + W 
Sbjct: 126 AMYLSLG-EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS-VSWC 183

Query: 636 ALL 638
           +++
Sbjct: 184 SMV 186


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/656 (35%), Positives = 370/656 (56%), Gaps = 25/656 (3%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY++ D  + A+ L      P  C +V+W  +++   Q+G     L+ F++M  +  ++ 
Sbjct: 1   MYSKLDLPNPAQLLLQ--LTPTRC-VVTWTALISGSVQNGYFSSALLYFSKMRRE-NIKP 56

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           +  +   A  A  +L     GKQ   +       +  ++ D     +    YS+ G   +
Sbjct: 57  NDFTFPCAFKASTALCLPFAGKQIHAI-----ALKLGQINDKFVGCSAFDMYSKTGLKFE 111

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF +M   NV +    W+A I+     G   +A+D F + +  G EP+++T  + L+
Sbjct: 112 AQRLFDEMPPRNVAV----WNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLN 167

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA    L LG++ H   I+           D+ V N +ID+Y KCK V++A ++F+ + 
Sbjct: 168 ACADARCLDLGRQLHGLVIR------SGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMG 221

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            +N    +W  M+ +  QN     A  +F  +  + + ++   + +S  + A A ++ L 
Sbjct: 222 RRNS--VSWCTMVAACEQNDEKEKACVVF--LMGRKEGIELTDYMVSSVISAYAGISGLE 277

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
           FGR +HA  ++   E  I FV + L+DMY + G I+    VF  + +RN+VSW ++++GY
Sbjct: 278 FGRSVHALAVKACVEGDI-FVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGY 336

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
              G  D A   F++M+ E +A + VT + +L ACS  G V  G + F+SM   + I   
Sbjct: 337 AHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPG 395

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
           AEHYACI D+LGRA  ++ A E ++ MP+ PT  +W ALLN CR++   ELG++AA+ L 
Sbjct: 396 AEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLF 455

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           +L+ +  G++ LLSN++A AGRW +   +R  MK  G+KK  GCSWV  K     F   D
Sbjct: 456 KLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKD 515

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
            +H ++ +I  +L  L   ++A GY+P T++AL+D+++EEK   +  HSEK+ALA+G++ 
Sbjct: 516 TSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIA 575

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             PG PIRITKNLRICGDCHSA  FIS I+  EII+RD+NRFH F++  C+C+ +W
Sbjct: 576 LPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 225/487 (46%), Gaps = 39/487 (8%)

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           Y   + P+PA  LLQ ++P+   V  W ALI  +V+     +A   F +M R    P+++
Sbjct: 2   YSKLDLPNPAQLLLQ-LTPTR-CVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDF 59

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TFP   KA   L     G  +HA+    G  ++ FV  +   MY++      A++LFDEM
Sbjct: 60  TFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 197 FQPGICDIVSWNTIVAAY---AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
             P   ++  WN  ++      + G A    + F R+ G    + D ++    L+ACA  
Sbjct: 120 -PPR--NVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGG----EPDLITFCAFLNACADA 172

Query: 254 GTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                G+Q  G++   +  FE     DV   N ++  Y +    E A  +F  M +    
Sbjct: 173 RCLDLGRQLHGLV--IRSGFE----GDVSVANGIIDVYGKCKEVELAEMVFNGMGRR--- 223

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            N V+W  ++A   Q     +A  VF   +  G+E     + S++S  A +  L  G+  
Sbjct: 224 -NSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSV 282

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H   +K    V+G    D+ V +AL+DMY KC S++    +F  +  +N  + +W  MI 
Sbjct: 283 HALAVK--ACVEG----DIFVGSALVDMYGKCGSIEDCEQVFHEMPERN--LVSWNAMIS 334

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y+  G  + A+ LF +M  Q + V  N  TL C L AC+R  A++ G +I    +R++Y
Sbjct: 335 GYAHQGDVDMAMTLFEEM--QSEAV-ANYVTLICVLSACSRGGAVKLGNEIFE-SMRDRY 390

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHW 549
             + P   +  C+ DM  R+G ++ A      +  R  +S W +L+    ++G  +    
Sbjct: 391 R-IEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKI 449

Query: 550 AFDQMRK 556
           A D + K
Sbjct: 450 AADNLFK 456


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/710 (35%), Positives = 392/710 (55%), Gaps = 31/710 (4%)

Query: 43  LLRQCKSLTQVYL--IHQQIIVQ---NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +++ C  L  V L  + Q +I++   +L     S LI  Y  +     A     ++    
Sbjct: 16  VIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDK- 74

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
                WN +I   V+    D+A +LF  MM     PD  TF  VL           G  +
Sbjct: 75  -DCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQL 133

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H ++  SG D    V N L+ +Y++   L  AR+LFD M Q    D+V WN ++  Y Q+
Sbjct: 134 HGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQ---IDLVVWNRMIGGYVQN 190

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +   MLF  M     ++ D ++  + L    SL   S  KQ  + E    +     +
Sbjct: 191 GFMDDASMLFNEMI-SAGIKPDSITFTSFLP---SLAESSSLKQ--IKEIHGYIVRHGVI 244

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            DV   +A++  Y +     DA  +  KM   + K ++V ++A+I+GY   G   +AL++
Sbjct: 245 LDVYLNSALIDLYFKC---RDA-VMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           FR +    + PN +T  S+L  CA + A+ LG+E H Y IK  L       +   V +A+
Sbjct: 301 FRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELE------EKCPVGSAI 354

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           ++MYAKC  +D+A ++F  I+ K  D   W  +I S+SQ+G   +A+ LF QM  +   V
Sbjct: 355 MNMYAKCGRLDLAHLIFGRISIK--DAICWNSIITSFSQDGKPEEAIYLFRQMGMEG--V 410

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           K +  T+S AL ACA + AL +G++IH ++++  +E  + F  + LI+MY++ G ++ AR
Sbjct: 411 KYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDL-FDMSALINMYAKCGKLNIAR 469

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
           +VF+ ++++N V+W S++  YG HG    +   F  M +EG+ PD +TFL +L +C H+G
Sbjct: 470 LVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAG 529

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            V+ G++YF  M++E+GI A+ EHYAC+ DL GRA  LDEA E+I  MP  P   +W  L
Sbjct: 530 QVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTL 589

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  CR+H NVEL E+A+  LL+LE +  G Y LL+++ A+AG+W+ V +I+ LMK  GV+
Sbjct: 590 LGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQ 649

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
           K PGCSW++    T  FF  D +HP+S +IY +L  L+  ++ +GYVPQ 
Sbjct: 650 KVPGCSWIEVNNTTCVFFAADGSHPESPQIYSLLKSLLLELRKVGYVPQA 699



 Score =  232 bits (592), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 164/575 (28%), Positives = 286/575 (49%), Gaps = 32/575 (5%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+  G  PD+YTFP V+K C  L + R G  +  +I   GFD ++FV ++L+ +YA    
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  AR+ FD+M      D V WN ++  Y Q G+++  + LF  M    + + D V+   
Sbjct: 61  IEDARRFFDKMIDK---DCVLWNVMINGYVQCGESDSAIKLFKDMMSS-EAKPDSVTFAC 116

Query: 246 ALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
            LS   S      G+Q  G++  +   F  +        N +VT YS+     DA  LF 
Sbjct: 117 VLSISCSEAMVEYGRQLHGLVVRSGLDFVPL------VGNTLVTVYSKGRQLGDARKLFD 170

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            M Q    +++V W+ +I GY Q G   +A  +F +M   G++P+ +T  S L   A   
Sbjct: 171 MMPQ----IDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESS 226

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           +L   KE H Y ++  + +      D+ + +ALID+Y KC+   +A  MF+       D+
Sbjct: 227 SLKQIKEIHGYIVRHGVIL------DVYLNSALIDLYFKCRDAVMACKMFN--LSTKFDI 278

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
             +T MI  Y  NG   DAL +F  + Q+  +  PNA T S  L ACA LAA++ GR++H
Sbjct: 279 VIYTAMISGYVLNGMNKDALEIFRWLLQKKMI--PNALTFSSILPACAGLAAIKLGRELH 336

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
            Y+++N+ E   P V + +++MY++ G +D A ++F  +  ++ + W S++T +   G  
Sbjct: 337 GYIIKNELEEKCP-VGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKP 395

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           ++A + F QM  EG+  D VT    L AC++   +  G +    M K     +     + 
Sbjct: 396 EEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKG-AFESDLFDMSA 454

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE--LES 662
           ++++  +  +L+ A  L+  +  E   + W +++     H  +       + +LE  ++ 
Sbjct: 455 LINMYAKCGKLNIA-RLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQP 513

Query: 663 EKDGSYTLLSNIYANAGRWKDVAR-IRSLMKHTGV 696
           +     T+LS+   +AG+ +D  R  R + +  G+
Sbjct: 514 DHITFLTILSSC-GHAGQVEDGVRYFRCMTEEYGI 547


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 269/754 (35%), Positives = 407/754 (53%), Gaps = 75/754 (9%)

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           PD A  +F     R   P+EY++  +++A   + SSR   +        GFD+  F  N 
Sbjct: 58  PDAARAVF----NRVRLPNEYSWSCIIQAY--VSSSRIHDARALFDSMPGFDA--FTWNI 109

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           ++A YAR + L  AR+LF  M      D+VSW  +VA YA+    E    LF RM     
Sbjct: 110 MIAAYARINRLDDARELFHGMISGR--DVVSWAILVAGYARHDRLEEASALFRRMP---- 163

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK---VKDVVSWNAMVTGYSR 292
              D V+  + L   A           G + EA+++F+R+     +D  + NAM+  Y +
Sbjct: 164 -LWDTVTCTSVLQGYA---------HNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGK 213

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
               + A  LF +++  N      +WS ++  YAQ GH   A   F +M     + + + 
Sbjct: 214 NARVDLAEGLFAQIKLRNA----ASWSLLLLTYAQNGHLDLAKKSFDRMP----QRDSIA 265

Query: 353 LVSLLSGCASVGALLLGKETHCY-----------------------TIKRVLS-VDGSHP 388
             ++ +  +  G L   +E   Y                        ++R+ S ++    
Sbjct: 266 FTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTV 325

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
              +V   L+++Y KC  VD AR + DA+    R   +WT MI +Y+QNG A +A+ LF 
Sbjct: 326 ATTVVAGTLVNLYGKCGRVDDARRVLDAMPV--RTSVSWTAMIAAYAQNGNAAEAINLFQ 383

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV----LRNQYEMLIPFVANCLI 504
            M  +    +P+  TL   + +CA L  L  G++IHA +    L +Q  ML+    N +I
Sbjct: 384 CMDLEG--AEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLL----NAVI 437

Query: 505 DMYSRSGDIDTARVVFDN--LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAP 561
            MY + G+++ AR VF++  L+ R+VV+WT+++  Y  +G+G++A   F +M  +G   P
Sbjct: 438 TMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEP 497

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + VTFL +L ACSH G ++Q  ++F SM  +FG+    +HY C+VDLLGRA RL EA +L
Sbjct: 498 NRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKL 557

Query: 622 I-EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           +      E   + W+A L+ C+++ ++E  + AA R+ ELE E      LLSN+YA  GR
Sbjct: 558 LLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGR 617

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
             DVARIR+ MK +GVKK  G SW++       F V D +HP+  +IY  L  L + IK 
Sbjct: 618 RADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKE 677

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSA 800
            GYVP T   L DVD+E+K  LL  HSE+LA+A GI++T PGT +R+ KNLR+C DCH+A
Sbjct: 678 AGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAA 737

Query: 801 ITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             FIS I+  +II+RD++RFHHFK+G C+C  YW
Sbjct: 738 TKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 132/553 (23%), Positives = 227/553 (41%), Gaps = 103/553 (18%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           F   ++AC           +H  I  S    N  + N L+ ++ +C     AR +F+ + 
Sbjct: 10  FEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVR 69

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
            P   +  SW+ I+ AY  S                                        
Sbjct: 70  LP---NEYSWSCIIQAYVSSS--------------------------------------- 87

Query: 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
                  + +A+ +F+ M   D  +WN M+  Y+RI   +DA  LF  M       +VV+
Sbjct: 88  ------RIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGR---DVVS 138

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+ ++AGYA+     EA  +FR+M       + VT  S+L G A  G L   +E      
Sbjct: 139 WAILVAGYARHDRLEEASALFRRMPLW----DTVTCTSVLQGYAHNGHLAEAQEL----- 189

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
                + G+   D    NA+I  Y K   VD+A  +F  I  K R+ A+W++++ +Y+QN
Sbjct: 190 --FDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQI--KLRNAASWSLLLLTYAQN 245

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV---------- 487
           G  + A   F +M Q+D +    AFT   A++  +    LR  R++  Y+          
Sbjct: 246 GHLDLAKKSFDRMPQRDSI----AFTAMTAVL--SDQGELRGAREMLRYLSAVDVIAWNA 299

Query: 488 -------------LRNQYEML------IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
                        +R  +  +         VA  L+++Y + G +D AR V D +  R  
Sbjct: 300 LLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTS 359

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           VSWT+++  Y  +G   +A   F  M  EG  P  +T + ++ +C+  G +  G +    
Sbjct: 360 VSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHAR 419

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII-WVALLNGCRIHANV 647
           +      S        ++ + G+   L+ A E+ E +P+    ++ W A++   R +A  
Sbjct: 420 IRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMI---RAYAQN 476

Query: 648 ELGELAANRLLEL 660
            +GE A     E+
Sbjct: 477 GVGEEAIELFQEM 489



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 130/283 (45%), Gaps = 53/283 (18%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S   V  WNAL+    R    D   RLF  M  R                          
Sbjct: 290 SAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTV------------------------ 325

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
                       +   V   L+ +Y +C  +  AR++ D M    +   VSW  ++AAYA
Sbjct: 326 ------------ATTVVAGTLVNLYGKCGRVDDARRVLDAM---PVRTSVSWTAMIAAYA 370

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           Q+G+A   + LF  M  +     D ++L++ + +CA LGT S GK+      +  +F   
Sbjct: 371 QNGNAAEAINLFQCMDLEGAEPSD-ITLISVVDSCAVLGTLSLGKRIHARIRSSPLFS-- 427

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL---NVVTWSAVIAGYAQRGHGH 332
             + ++  NA++T Y + G+ E A  +F     E+V L   +VVTW+A+I  YAQ G G 
Sbjct: 428 --QSLMLLNAVITMYGKCGNLELAREVF-----ESVPLRTRSVVTWTAMIRAYAQNGVGE 480

Query: 333 EALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           EA+++F++M    G EPN VT +S+LS C+ +G L    E  C
Sbjct: 481 EAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFC 523



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 38/278 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I    +      A  LF  M   G  P + T   V+ +C  L +   G  +HA I 
Sbjct: 362 WTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIR 421

Query: 163 SSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
           SS  F  ++ + NA++ MY +C  L  AR++F E        +V+W  ++ AYAQ+G  E
Sbjct: 422 SSPLFSQSLMLLNAVITMYGKCGNLELAREVF-ESVPLRTRSVVTWTAMIRAYAQNGVGE 480

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG---------------------- 259
             + LF  M  D   + + V+ ++ LSAC+ LG   +                       
Sbjct: 481 EAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCC 540

Query: 260 -----KQCGMMEEAKKVFERMK--VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ---E 309
                 + G + EA+K+  R K    DVV W A ++     G  E +    K++ +   E
Sbjct: 541 LVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPE 600

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
           NV   V+  +     YA +G   +   +  +M+  G++
Sbjct: 601 NVAGRVLLSNV----YAAKGRRADVARIRNEMKSSGVK 634



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 143/363 (39%), Gaps = 56/363 (15%)

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           + A  +G++ H   I         H D+  + N LID++ KC   D AR +F+ +   N 
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
              +W+ +I +Y  +   +DA ALF      D +   +AFT +  + A AR+  L   R+
Sbjct: 74  --YSWSCIIQAYVSSSRIHDARALF------DSMPGFDAFTWNIMIAAYARINRLDDARE 125

Query: 483 I---------------------------HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
           +                            A  L  +  +        ++  Y+ +G +  
Sbjct: 126 LFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAE 185

Query: 516 ARVVFDNL---KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           A+ +FD +     R+  +  +++  YG +   D A   F Q++    A    + L+L YA
Sbjct: 186 AQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAA--SWSLLLLTYA 243

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
              +G +D   K FD M +   I+     +  +  +L     L  A E++  +      I
Sbjct: 244 --QNGHLDLAKKSFDRMPQRDSIA-----FTAMTAVLSDQGELRGAREMLRYLSAVDV-I 295

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL----LSNIYANAGRWKDVARIR 688
            W ALL G     +++       RL      +  + T+    L N+Y   GR  D  R+ 
Sbjct: 296 AWNALLEGYSRTGDLD----EVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVL 351

Query: 689 SLM 691
             M
Sbjct: 352 DAM 354


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 338/576 (58%), Gaps = 19/576 (3%)

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           G++  ++ +A+ +F+R+   D VS+N +++ +   G    A  LF  M       NV +W
Sbjct: 61  GRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAM--PATARNVTSW 118

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           + +++G ++ G   EA  VF  M       N ++  +++S  A  G +   +E  C+   
Sbjct: 119 NTMLSGLSRSGAVGEARAVFLAMP----ARNSISWNAMVSCFAHAGDMCAAEE--CFE-- 170

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                D    ++ ++  A++  Y     V+ A   F+A+    R + +W  ++  Y +N 
Sbjct: 171 -----DAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPV--RSLVSWNAVVAGYVKNS 223

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            A DAL +F  M + D  V+PN  TLS  L+ C+ L+AL FGRQ+H +  +      +  
Sbjct: 224 RAEDALWVFKTMVR-DADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVT- 281

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
               L+ MY + GD+D A  +F  ++ R+V++W ++++GY  HG G +A   F++M+ +G
Sbjct: 282 AGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQG 341

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           + P+ +TF+ +L AC H+GM D G++ F+ M + +GI AR +HY+C+VDLL RA  L+ A
Sbjct: 342 VEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERA 401

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
           V LI  MP +P P  +  LLN  R++ N+E  E AA +L+E   +  G+Y  L+NIYA A
Sbjct: 402 VSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVA 461

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
            +W DV+R+R  MK   V K PG SWV+       F   DR HPQ   I+E L  L +R+
Sbjct: 462 NQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERM 521

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           KAMGYVP   FALHDVD+  K  +L  HSEKLA+A+G+L+TAPG  +RI KNLR+CGDCH
Sbjct: 522 KAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCH 581

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +A   IS I + EIILRD+ RFHHF+ G C+C  YW
Sbjct: 582 TAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 176/377 (46%), Gaps = 56/377 (14%)

Query: 174 NALMAMYARCDT--------LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           N L+A YAR           L+ AR LFD + +P   D VS+NT+++ +  +GD  G   
Sbjct: 47  NRLLAGYARAARPGGRRDRLLADARHLFDRIPRP---DAVSYNTLLSCHFAAGDVRGARD 103

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLG---------------TWSRGKQC----GMME 266
           LFA M    +      ++++ LS   ++G               +W+    C    G M 
Sbjct: 104 LFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMC 163

Query: 267 EAKKVFERMKVKD-VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
            A++ FE    K+  V W AMV+GY   G  E A   F+ M       ++V+W+AV+AGY
Sbjct: 164 AAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVR----SLVSWNAVVAGY 219

Query: 326 AQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            +     +AL VF+ M +   + PN  TL S+L GC+++ AL  G++ H +  K  LS  
Sbjct: 220 VKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLS-- 277

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                 +    +L+ MY KC  +D A  +F  +  + RDV  W  MI  Y+ +G   +A+
Sbjct: 278 ----RRVTAGTSLVSMYCKCGDLDGACKLFSEM--RIRDVIAWNAMISGYAHHGDGREAI 331

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-----HAYVLRNQYEMLIPFV 499
            LF +M  Q   V+PN  T    L AC       FG Q        Y +  + +      
Sbjct: 332 ELFEKMKSQG--VEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHY---- 385

Query: 500 ANCLIDMYSRSGDIDTA 516
            +C++D+  R+G ++ A
Sbjct: 386 -SCMVDLLCRAGSLERA 401



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 30/209 (14%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N  +  A+++ Y     +  A Q F+ M    +  +VSWN +VA Y ++  AE  L +F 
Sbjct: 177 NAVLWTAMVSGYMDSGHVEKAMQFFEAM---PVRSLVSWNAVVAGYVKNSRAEDALWVFK 233

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------C 262
            M  D  V+ +  +L + L  C++L     G+Q                          C
Sbjct: 234 TMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKC 293

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ A K+F  M+++DV++WNAM++GY+  G   +A  LF+KM+ + V+ N +T+ AV+
Sbjct: 294 GDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVL 353

Query: 323 AGYAQRGHGHEALDVFRQMQ-FCGLEPNV 350
                 G     +  F +MQ   G+E  V
Sbjct: 354 TACIHTGMCDFGMQCFERMQEVYGIEARV 382



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 23/216 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSV 157
           S+  WNA++   V+    ++A  +F  M+R     P+E T   VL  C  L +   G  V
Sbjct: 208 SLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQV 267

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H           V    +L++MY +C  L  A +LF EM    I D+++WN +++ YA  
Sbjct: 268 HQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEM---RIRDVIAWNAMISGYAHH 324

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           GD    + LF +M     V+ + ++ V  L+AC   G    G QC         FERM  
Sbjct: 325 GDGREAIELFEKMKSQ-GVEPNWITFVAVLTACIHTGMCDFGMQC---------FERM-- 372

Query: 278 KDVVSWNAMVTGYS-------RIGSFEDAFALFKKM 306
           ++V    A V  YS       R GS E A +L + M
Sbjct: 373 QEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSM 408


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/683 (34%), Positives = 387/683 (56%), Gaps = 59/683 (8%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L  A  LFD++ +P   D+ +W  +++ + Q G  +  + +++ +     V+ D   L++
Sbjct: 27  LKRALYLFDKIPEP---DLRTWTILISGHTQHGFPKKAIDIYSTLLSR-NVRPDKFVLLS 82

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKV-FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
              ACA+ G     K+  + ++A +  F     KD+V  NA++  + +      A  +F 
Sbjct: 83  VAKACAASGDLVVAKK--IHDDAIQFGFN----KDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            M    V  +VV+W+++   Y   G   + + +FR+M   G+  N +T+ S+L  CA   
Sbjct: 137 DM----VVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY- 191

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            + LG+E H + ++  +        ++ V +AL++MYA    +  AR++FD++   +RD+
Sbjct: 192 -IKLGREVHGFILRNEME------GNVYVSSALVNMYASSLGLKQARLVFDSMY--HRDI 242

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQ-------------------------------- 452
            +W VM+ +Y  N      L LF QM +                                
Sbjct: 243 VSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCK 302

Query: 453 -QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            QD  +KPN  T+  AL  C  L +LR G++IH YV R+ +   +  +   L+ +Y++ G
Sbjct: 303 MQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVT-ITTALVLLYAKCG 361

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           D++ +R VF+ + +++VV+W +++    MHG G ++   F++M   G+ P+ VTF+ +L 
Sbjct: 362 DLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLS 421

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
            CSHS + D+GL  F+SMS E  I+  A+HY+C+VD+L RA RL+EA + I  MP+EPT 
Sbjct: 422 GCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTA 481

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
             W ALL  CR++ NVELG LAA++L E+E +  G+Y LLSNI   A +W + + IR +M
Sbjct: 482 AAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMM 541

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
           +  G+ K PG SWVQ K    +F  GD+++ Q   IY  L  + ++++  GY P T F L
Sbjct: 542 RDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVL 601

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
            +VD E++ + L  HSE+LA+A+GIL ++  T +R+ KNLRICGDCH+AI  I+ I+  +
Sbjct: 602 QNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQ 661

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           II+RDS RFHHF++G CTC  +W
Sbjct: 662 IIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 225/477 (47%), Gaps = 40/477 (8%)

Query: 64  NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
           NL       LI   ++      AL L  +I P P  +  W  LI    +   P  A  ++
Sbjct: 8   NLQPCQSIKLIKTCLNSGDLKRALYLFDKI-PEP-DLRTWTILISGHTQHGFPKKAIDIY 65

Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
             ++ R   PD++    V KAC           +H      GF+ ++ + NAL+ M+ +C
Sbjct: 66  STLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKC 125

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             ++ AR +FD+M    + D+VSW ++   Y   G    G++LF  M G   ++ + +++
Sbjct: 126 KFVNGARCVFDDMV---VKDVVSWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANSLTV 181

Query: 244 VNALSACASL--------GTWSRGKQCGM----------------MEEAKKVFERMKVKD 279
            + L ACA          G   R +  G                 +++A+ VF+ M  +D
Sbjct: 182 SSILPACADYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRD 241

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           +VSWN M+T Y     +E    LF +MR+E +KLN  +W+A I+G  Q G    AL +  
Sbjct: 242 IVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILC 301

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
           +MQ  G++PN +T+VS L GC ++ +L  GKE H Y  +          +D+ +  AL+ 
Sbjct: 302 KMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWF------IEDVTITTALVL 355

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +YAKC  ++++R +F+ +  K  DV  W  MI + S +G   ++L LF +M   D  V+P
Sbjct: 356 LYAKCGDLELSRHVFNTMPRK--DVVAWNTMIMANSMHGKGGESLILFNKML--DSGVEP 411

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           N+ T    L  C+       G  +   +             +C++D+ SR+G ++ A
Sbjct: 412 NSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEA 468



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 28/277 (10%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFS 99
           +SL L+Q + L    + H+ I+  N+       ++ AY  +      L L  ++      
Sbjct: 223 SSLGLKQAR-LVFDSMYHRDIVSWNV-------MLTAYFLNKEYERGLGLFHQMRKEGIK 274

Query: 100 VFW--WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           +    WNA I   ++    + A  +  +M   G  P+  T    L  C  L S R G  +
Sbjct: 275 LNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEI 334

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +    F  +V +  AL+ +YA+C  L  +R +F+ M +    D+V+WNT++ A +  
Sbjct: 335 HGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRK---DVVAWNTMIMANSMH 391

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G     L+LF +M  D  V+ + V+ +  LS C+            + +E   VF  M  
Sbjct: 392 GKGGESLILFNKML-DSGVEPNSVTFIGVLSGCS---------HSQLADEGLLVFNSMSS 441

Query: 278 K-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           +     D   ++ MV   SR G  E+A+   +KM  E
Sbjct: 442 EHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIE 478



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           I  +  CL      SGD+  A  +FD + + ++ +WT L++G+  HG   KA   +  + 
Sbjct: 15  IKLIKTCL-----NSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLL 69

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
              + PD    L +  AC+ SG +    K  D  + +FG +        ++D+ G+   +
Sbjct: 70  SRNVRPDKFVLLSVAKACAASGDLVVAKKIHDD-AIQFGFNKDLVLGNALIDMFGKCKFV 128

Query: 616 DEAVELIEGMPMEPTPIIWVAL 637
           + A  + + M ++   + W ++
Sbjct: 129 NGARCVFDDMVVKDV-VSWTSM 149


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/551 (40%), Positives = 326/551 (59%), Gaps = 15/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
            ++++ Y++ G    A  +F +M   +     V W+A+I  Y   G   EA+ V R    
Sbjct: 110 TSLLSLYAKCGLLHRAQRVFDEMPHPST----VPWTALITAYMDAGDLREAVHVARNAFA 165

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+  T V +L+ CA +  L  G+     T+ R    +G     + V  A +D+Y K
Sbjct: 166 NGMRPDSFTAVRVLTACARIADLATGE-----TVWRAAEQEGV-AQSVFVATAAVDLYVK 219

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  +  AR +FD +  +++D   W  M+G Y+ NG   +AL LF  M  Q + +KP+ + 
Sbjct: 220 CGEMAKAREVFDKM--RHKDAVAWGAMVGGYASNGHPREALDLFLAM--QAEGMKPDCYA 275

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           ++ AL AC RL AL  GRQ    V  +++ +  P +   LIDMY++ G    A VVF  +
Sbjct: 276 VAGALSACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTVEAWVVFQQM 334

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           ++++++ W +++ G GM G    A     QM K G+  +  TF+ LL +C+H+G++  G 
Sbjct: 335 RKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 394

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YF +M+K + IS R EHY C+VDLL RA  L EA +L++ MPM    +I  ALL GC+I
Sbjct: 395 RYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKI 454

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N EL E    +L+ LE    G+Y +LSNIY+N GRW+D A++R  MK  GV+K P CS
Sbjct: 455 HRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACS 514

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           WV+ +     F VGD++HP S +IY+ L  L   +K MGY P T   + DV+DEEK   L
Sbjct: 515 WVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTL 574

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+A+ +L T PG  IR+TKNLR+C DCH+AI  +S I + EII+RD+NRFH F
Sbjct: 575 VHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCF 634

Query: 824 KEGSCTCKGYW 834
           ++GSC+C  YW
Sbjct: 635 RDGSCSCNDYW 645



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 130/305 (42%), Gaps = 35/305 (11%)

Query: 66  THVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRL 122
           +H  P H++ + +S  A    L   QR+    P P +V W  ALI   +       A  +
Sbjct: 102 SHTNP-HVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPW-TALITAYMDAGDLREAVHV 159

Query: 123 FLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182
                  G  PD +T   VL AC  +     G +V       G   +VFV  A + +Y +
Sbjct: 160 ARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVK 219

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           C  ++ AR++FD+M      D V+W  +V  YA +G     L LF  M  +  ++ D  +
Sbjct: 220 CGEMAKAREVFDKMRHK---DAVAWGAMVGGYASNGHPREALDLFLAMQAE-GMKPDCYA 275

Query: 243 LVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMK 276
           +  ALSAC  LG    G+Q                          CG   EA  VF++M+
Sbjct: 276 VAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMR 335

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            KD++ WNAM+ G    G  + AFAL  +M +  VKLN  T+  ++      G   +   
Sbjct: 336 KKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 395

Query: 337 VFRQM 341
            F  M
Sbjct: 396 YFHNM 400



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 456 LVKPNAFTLSCALMACARLA-ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           L  P+  T+  AL + +RL   LR G Q+HA  L+       P V   L+ +Y++ G + 
Sbjct: 65  LPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHT-NPHVLTSLLSLYAKCGLLH 123

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHG-LGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            A+ VFD +   + V WT+L+T Y   G L +  H A +     G+ PD  T + +L AC
Sbjct: 124 RAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAF-ANGMRPDSFTAVRVLTAC 182

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +    +  G   + +  +E G++         VDL  +   + +A E+ + M      + 
Sbjct: 183 ARIADLATGETVWRAAEQE-GVAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RHKDAVA 240

Query: 634 WVALLNG 640
           W A++ G
Sbjct: 241 WGAMVGG 247


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/694 (34%), Positives = 373/694 (53%), Gaps = 72/694 (10%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
           +  HA I  SG  ++ ++   L+A Y+  +  + A  +   +  P    I S+++++ A 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDP---TIYSFSSLIYAL 91

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------- 261
            ++      + +F+RM     +  D   L N    CA L  +  GKQ             
Sbjct: 92  TKAKLFTQSIGVFSRMFSHGLIP-DSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150

Query: 262 -------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
                        CG M +A+KVF+RM  KDVV+ +A++  Y+R G  E+   +  +M  
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             ++ N+V+W+ +++G+ + G+  EA+ +F+++   G  P+ VT+ S+L        L +
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK---------------------CKS- 406
           G+  H Y IK+ L  D        VI+A+IDMY K                     C + 
Sbjct: 271 GRLIHGYVIKQGLLKDKC------VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAY 324

Query: 407 ---------VDVARVMFDAIAPKNRD--VATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
                    VD A  MF+    +  +  V +WT +I   +QNG   +AL LF +M  Q  
Sbjct: 325 ITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM--QVA 382

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            VKPN  T+   L AC  +AAL  GR  H + +R      +  V + LIDMY++ G I+ 
Sbjct: 383 GVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV-HVGSALIDMYAKCGRINL 441

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           +++VF+ +  +N+V W SLM G+ MHG   +    F+ + +  L PD ++F  LL AC  
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+ D+G KYF  MS+E+GI  R EHY+C+V+LLGRA +L EA +LI+ MP EP   +W 
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWG 561

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALLN CR+  NV+L E+AA +L  LE E  G+Y LLSNIYA  G W +V  IR+ M+  G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCSW+Q K    T   GD++HPQ  +I E +  + + ++  G+ P   FALHDV+
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVE 681

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITK 789
           ++E+  +L+ HSEKLA+ +G+L T  GTP+++ +
Sbjct: 682 EQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVER 715



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/564 (25%), Positives = 271/564 (48%), Gaps = 84/564 (14%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           + LIA+Y ++N  + A  +LQ I P P +++ +++LI    + +L   +  +F +M   G
Sbjct: 54  AKLIASYSNYNCFNDADLVLQSI-PDP-TIYSFSSLIYALTKAKLFTQSIGVFSRMFSHG 111

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             PD +  P + K C EL + + G  +H V C SG D + FV  ++  MY RC  +  AR
Sbjct: 112 LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDAR 171

Query: 191 QLFD-------------------------------EMFQPGI-CDIVSWNTIVAAYAQSG 218
           ++FD                               EM   GI  +IVSWN I++ + +SG
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             +  +++F ++   +    D V++ + L +       + G+                  
Sbjct: 232 YHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI 290

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   + G +     +F + ++ +    NA +TG SR G  + A  +F+  +++ ++
Sbjct: 291 SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTME 350

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           LNVV+W+++IAG AQ G   EAL++FR+MQ  G++PN VT+ S+L  C ++ AL  G+ T
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432
           H + + RV  +D  H     V +ALIDMYAKC  +++++++F+ +  KN  +  W  ++ 
Sbjct: 411 HGFAV-RVHLLDNVH-----VGSALIDMYAKCGRINLSQIVFNMMPTKN--LVCWNSLMN 462

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAYV 487
            +S +G A + +++F  + +    +KP+  + +  L AC ++         F      Y 
Sbjct: 463 GFSMHGKAKEVMSIFESLMRTR--LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG 520

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDK 546
           ++ + E       +C++++  R+G +  A  +   +  + +   W +L+    +    D 
Sbjct: 521 IKPRLEHY-----SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL 570
           A  A +++    L P+     VLL
Sbjct: 576 AEIAAEKLFH--LEPENPGTYVLL 597


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/554 (40%), Positives = 332/554 (59%), Gaps = 24/554 (4%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V  Y+R G+ EDA  +   M + NV    V+W+A+I+GY+Q     EA D+F  M   G
Sbjct: 76  LVIMYARCGALEDAHNVLDGMPERNV----VSWTAMISGYSQNERPAEAWDLFIMMLRAG 131

Query: 346 LEPNVVTLVSLLSGCASVGALLLG--KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            EPN  TL S+L+ C     +     K+ H + IK+   +       + V ++L+DMYA+
Sbjct: 132 CEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELH------MFVGSSLLDMYAR 185

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
            +++  AR +FD +    RDV ++T ++  Y++ G   +AL LF Q++ +   ++ N  T
Sbjct: 186 SENIQEARRVFDMLPA--RDVVSYTTILSGYTRLGLDEEALNLFRQLYNEG--MQCNQVT 241

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF---VANCLIDMYSRSGDIDTARVVF 520
            S  L A + L+++ +G+Q+H  +LR +    +PF   + N LIDMYS+ G +  +R VF
Sbjct: 242 FSVLLNALSGLSSMDYGKQVHGLILRRE----LPFFMALQNSLIDMYSKCGKLLYSRRVF 297

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           DN+ +R+VVSW +++ GYG HG+  +    F  M  + + PD VT L +L   SH G+VD
Sbjct: 298 DNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM-CDKVKPDSVTLLAVLLGYSHGGLVD 356

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +GL  FD + KE       +HY C++DLLGR+ +L++A+ LI+ MP +PT  IW +LL  
Sbjct: 357 EGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGA 416

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR+HANV +GE  A +L ++E E  G+Y +LSNIYA A  WKDV R+R LM    V K P
Sbjct: 417 CRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDVFRLRKLMLKKTVIKEP 476

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           G SW+   +   TF   +R HP+ + I   +  +   IKA G+VP  S  LHDVDDE+K 
Sbjct: 477 GRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAGFVPDLSCVLHDVDDEQKE 536

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
            +L  HSEKLA+ +G+++T     I++ KNLRIC DCH+   F+S +   EI LRD NRF
Sbjct: 537 RMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRF 596

Query: 821 HHFKEGSCTCKGYW 834
           H   EG+CTC  YW
Sbjct: 597 HLITEGACTCGDYW 610



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 192/422 (45%), Gaps = 83/422 (19%)

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
           R G  VHA + ++G+   +++   L+ MYARC  L  A  + D M +    ++VSW  ++
Sbjct: 52  REGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER---NVVSWTAMI 108

Query: 212 AAYAQSGDAEGGLMLFARM-------------------TGDVKVQGDGVSLVNALS---- 248
           + Y+Q+        LF  M                   TG   +    +  V+A +    
Sbjct: 109 SGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKN 168

Query: 249 -------ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
                    + L  ++R +    ++EA++VF+ +  +DVVS+  +++GY+R+G  E+A  
Sbjct: 169 FELHMFVGSSLLDMYARSEN---IQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALN 225

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           LF+++  E ++ N VT+S                                 L++ LSG +
Sbjct: 226 LFRQLYNEGMQCNQVTFS--------------------------------VLLNALSGLS 253

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           S+     GK+ H   ++R L      P  + + N+LIDMY+KC  +  +R +FD +    
Sbjct: 254 SMD---YGKQVHGLILRREL------PFFMALQNSLIDMYSKCGKLLYSRRVFDNMP--E 302

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           R V +W  M+  Y ++G A + + LF   F  DK VKP++ TL   L+  +    +  G 
Sbjct: 303 RSVVSWNAMLMGYGRHGMAYEVVQLFR--FMCDK-VKPDSVTLLAVLLGYSHGGLVDEGL 359

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGM 540
            +  ++++ Q  +L      C+ID+  RSG ++ A ++   +  Q     W SL+    +
Sbjct: 360 DMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRV 419

Query: 541 HG 542
           H 
Sbjct: 420 HA 421



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 33/268 (12%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSS 156
           +V  W A+I    +   P  A+ LF+ M+R G  P+E+T   VL +C   +         
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQ 159

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VHA      F+ ++FV ++L+ MYAR + +  AR++FD +  P   D+VS+ TI++ Y +
Sbjct: 160 VHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDML--PAR-DVVSYTTILSGYTR 216

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
            G  E  L LF ++  +  +Q + V+    L+A + L +   GKQ               
Sbjct: 217 LGLDEEALNLFRQLYNE-GMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMA 275

Query: 262 -----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                      CG +  +++VF+ M  + VVSWNAM+ GY R G   +   LF+ M  + 
Sbjct: 276 LQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM-CDK 334

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           VK + VT  AV+ GY+  G   E LD+F
Sbjct: 335 VKPDSVTLLAVLLGYSHGGLVDEGLDMF 362



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 24/255 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  +  ++    RL L + A  LF Q+   G   ++ TF  +L A   L S   G  VH 
Sbjct: 204 VVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHG 263

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +I        + + N+L+ MY++C  L Y+R++FD M +     +VSWN ++  Y + G 
Sbjct: 264 LILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERS---VVSWNAMLMGYGRHGM 320

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF-----ER 274
           A   + LF  M    KV+ D V+L+      A L  +S G   G+++E   +F     E+
Sbjct: 321 AYEVVQLFRFMCD--KVKPDSVTLL------AVLLGYSHG---GLVDEGLDMFDHIVKEQ 369

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
             + +   +  ++    R G  E A  L +KM  +  +     W +++   A R H +  
Sbjct: 370 STLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTR---AIWGSLLG--ACRVHANVH 424

Query: 335 LDVFRQMQFCGLEPN 349
           +  F   +   +EP 
Sbjct: 425 VGEFVAQKLFDIEPE 439



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 99/198 (50%), Gaps = 6/198 (3%)

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
           A+  C    ALR GRQ+HA ++   Y   + ++A  L+ MY+R G ++ A  V D + +R
Sbjct: 41  AITECVGRRALREGRQVHARMVTAGYRPAL-YLATRLVIMYARCGALEDAHNVLDGMPER 99

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS-GMVDQGLKY 585
           NVVSWT++++GY  +    +A   F  M + G  P+  T   +L +C+ S G+    +K 
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQ 159

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
             + + +          + ++D+  R+  + EA  + + +P     + +  +L+G   + 
Sbjct: 160 VHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDV-VSYTTILSG---YT 215

Query: 646 NVELGELAANRLLELESE 663
            + L E A N   +L +E
Sbjct: 216 RLGLDEEALNLFRQLYNE 233


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/685 (36%), Positives = 382/685 (55%), Gaps = 36/685 (5%)

Query: 154 GSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           G +VHA V+ ++ FD  V   N L+A+Y +C  L  ARQ+FD M      + VS N +++
Sbjct: 35  GKAVHARVVRAARFD--VVQYNNLIALYVKCGRLGLARQVFDAMPSR---NPVSGNLLMS 89

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVS---LVNALSACASLGTWSRGKQCGMMEEAK 269
            YA SG     L L        +V   G++   L +A++A A + ++  G+QC       
Sbjct: 90  GYASSGRHRDALALL-------RVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKA 142

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
            + E   V      +A++  Y +    ++A  +F  +       NV  ++++I G+  RG
Sbjct: 143 GLAEHPYV-----CSAVLHMYCQCAHMDEAVKVFDNVSS----FNVFAFNSMINGFLDRG 193

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
               +  + R M     + + V+ V++L  CAS   ++LG + H   +KR L ++     
Sbjct: 194 QMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELN----- 248

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
            + V +AL+DMY KC     A  +F+ +  KN  + +WT ++ +Y+QN    DAL LF  
Sbjct: 249 -VYVGSALVDMYGKCDFPHEANRVFEVLPEKN--IVSWTAIMTAYTQNELFEDALQLFLD 305

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M  +   V+PN FT + AL +CA LA L+ G  + A  ++  +  L+P V N L++MYS+
Sbjct: 306 MEMEG--VRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLP-VCNALMNMYSK 362

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           SG ++ AR VF ++  R+VVSW S++ GY  HG   +A  AF  M      P  VTF+ +
Sbjct: 363 SGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGV 422

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L AC+  G+VD+G  Y + M KE G+    EHY C+V LL R  RLDEA   IE   +  
Sbjct: 423 LSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGT 482

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
             + W +LL+ C+++ N  LG   A ++ +L+ +  G+Y LLSN+YA A RW  V ++R 
Sbjct: 483 DVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRR 542

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           LM+  GV+K PG SW+Q       F   D+ HP  ++I + L  L+ +IK +GYVP  + 
Sbjct: 543 LMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAV 602

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
           ALHDV+DE+K + L  HSEKLALA+G++ T  G  IRI KN+RIC DCH AI  IS+   
Sbjct: 603 ALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATG 662

Query: 810 HEIILRDSNRFHHFKEGSCTCKGYW 834
             I++RD+ RFH  ++G C+C  YW
Sbjct: 663 RRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 195/475 (41%), Gaps = 100/475 (21%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +EY     + A   + S   G   H     +G   + +VC+A++ MY +C  +  A ++F
Sbjct: 112 NEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVF 171

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D +      ++ ++N+++  +   G  +G   +   M  +V  Q D VS V  L  CAS 
Sbjct: 172 DNVSS---FNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVG-QWDHVSYVAVLGHCAST 227

Query: 254 GTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMV 287
                G Q                          C    EA +VFE +  K++VSW A++
Sbjct: 228 KEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIM 287

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
           T Y++   FEDA  LF  M  E                                   G+ 
Sbjct: 288 TAYTQNELFEDALQLFLDMEME-----------------------------------GVR 312

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           PN  T    L+ CA +  L  G      T+K        H   L V NAL++MY+K  SV
Sbjct: 313 PNEFTYAVALNSCAGLATLKNGNALGACTMKT------GHWGLLPVCNALMNMYSKSGSV 366

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + AR +F  ++   RDV +W  +I  Y+ +G A +A+  F  M   +++  P+  T    
Sbjct: 367 EDARRVF--LSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV--PSYVTFIGV 422

Query: 468 LMACARLAALRFG--------RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA-RV 518
           L ACA+L  +  G        +++     +  Y         C++ +  R G +D A R 
Sbjct: 423 LSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHY--------TCMVGLLCRVGRLDEAERF 474

Query: 519 VFDNLKQRNVVSWTSLMTG---YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           +  N    +VV+W SL++    Y  +GLG   H   +Q+ +  L P  V   VLL
Sbjct: 475 IESNCIGTDVVAWRSLLSSCQVYRNYGLG---HRVAEQIFQ--LKPKDVGTYVLL 524



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S F+VF +N++I   +     D +  +   M+R     D  ++  VL  C        GS
Sbjct: 175 SSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGS 234

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH        + NV+V +AL+ MY +CD    A ++F+ + +    +IVSW  I+ AY 
Sbjct: 235 QVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEK---NIVSWTAIMTAYT 291

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           Q+   E  L LF  M  +  V+ +  +   AL++CA L T   G   G        +  +
Sbjct: 292 QNELFEDALQLFLDMEME-GVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLL 350

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
            V      NA++  YS+ GS EDA  +F  M       +VV+W+++I GYA  G   EA+
Sbjct: 351 PV-----CNALMNMYSKSGSVEDARRVFLSMPCR----DVVSWNSIIIGYAHHGRAREAM 401

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           + F  M F    P+ VT + +LS CA +G
Sbjct: 402 EAFHDMLFAEEVPSYVTFIGVLSACAQLG 430



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 32/327 (9%)

Query: 43  LLRQCKSLTQVYL---IHQQIIVQ--NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +L  C S  +V L   +H Q + +   L     S L+  Y   + P  A  + + +    
Sbjct: 220 VLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEK- 278

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++  W A++    +  L ++A +LFL M   G  P+E+T+   L +C  L + + G+++
Sbjct: 279 -NIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNAL 337

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQ 216
            A    +G    + VCNALM MY++  ++  AR++F  M  P  C D+VSWN+I+  YA 
Sbjct: 338 GACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSM--P--CRDVVSWNSIIIGYAH 393

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G A   +  F  M    +V    V+ +  LSACA LG    G           + + + 
Sbjct: 394 HGRAREAMEAFHDMLFAEEVP-SYVTFIGVLSACAQLGLVDEG-----FYYLNIMMKEVG 447

Query: 277 VK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-VKLNVVTWSAVIAG---YAQRGHG 331
           VK     +  MV    R+G  ++A    ++  + N +  +VV W ++++    Y   G G
Sbjct: 448 VKPGKEHYTCMVGLLCRVGRLDEA----ERFIESNCIGTDVVAWRSLLSSCQVYRNYGLG 503

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLS 358
           H   +     Q   L+P  V    LLS
Sbjct: 504 HRVAE-----QIFQLKPKDVGTYVLLS 525


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 347/557 (62%), Gaps = 18/557 (3%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+   N ++  + + G   DA  LF +M ++++     +W  +I G+   G+  EA  +F
Sbjct: 151 DLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDM----ASWMTMIGGFVDSGNFSEAFGLF 206

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M     +    T  +++   A +G + +G++ H   +KR +       DD  V  ALI
Sbjct: 207 LCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVG------DDTFVSCALI 260

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY+KC S++ A  +FD +  K      W  +I SY+ +G + +AL+ + +M  +D   K
Sbjct: 261 DMYSKCGSIEDAHCVFDQMPEKT--TVGWNSIIASYALHGYSEEALSFYYEM--RDSGAK 316

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN-CLIDMYSRSGDIDTAR 517
            + FT+S  +  CARLA+L + +Q HA ++R  Y+  I  VAN  L+D YS+ G ++ A 
Sbjct: 317 IDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDI--VANTALVDFYSKWGRMEDAW 374

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VF+ ++++NV+SW +L+ GYG HG G++A   F+QM +EG+ P+ VTFL +L ACS+SG
Sbjct: 375 HVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSG 434

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           + ++G + F SMS++  +  RA HYAC+V+LLGR   LDEA ELI   P +PT  +W  L
Sbjct: 435 LSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATL 494

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  CR+H N+ELG+LAA  L  +E EK  +Y +L N+Y ++G+ K+ A +   +K  G++
Sbjct: 495 LTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLR 554

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
             P C+W++ K+ +  F  GD++H Q+++IYE +  ++  I   GYV +    L DVD+E
Sbjct: 555 MLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEE 614

Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           E+  L + HSEKLA+A+G++ T   TP++IT+  R+CGDCHSAI FI+M+   EI++RD+
Sbjct: 615 EQRILKY-HSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDA 673

Query: 818 NRFHHFKEGSCTCKGYW 834
           +RFHHF++GSC+C  YW
Sbjct: 674 SRFHHFRDGSCSCGDYW 690



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 223/482 (46%), Gaps = 35/482 (7%)

Query: 118 NAFRLF--LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
            A  LF  L++   G+     T+  ++ AC  L S R    V   + +SGF+ +++V N 
Sbjct: 98  EAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNR 157

Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
           ++ ++ +C  +  AR+LFDEM +    D+ SW T++  +  SG+      LF  M  +  
Sbjct: 158 VLFVHVKCGLMLDARKLFDEMPEK---DMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFN 214

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQ---CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
             G   +    + A A LG    G+Q   C +        +R    D     A++  YS+
Sbjct: 215 -DGRSRTFTTMIRASAGLGLVQVGRQIHSCAL--------KRGVGDDTFVSCALIDMYSK 265

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            GS EDA  +F +M ++      V W+++IA YA  G+  EAL  + +M+  G + +  T
Sbjct: 266 CGSIEDAHCVFDQMPEK----TTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFT 321

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           +  ++  CA + +L   K+ H   ++R       +  D++   AL+D Y+K   ++ A  
Sbjct: 322 ISIVIRICARLASLEYAKQAHAALVRR------GYDTDIVANTALVDFYSKWGRMEDAWH 375

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F+ +  KN  V +W  +I  Y  +G   +A+ +F QM ++  +  PN  T    L AC+
Sbjct: 376 VFNRMRRKN--VISWNALIAGYGNHGQGEEAVEMFEQMLREGMI--PNHVTFLAVLSACS 431

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-W 531
                  G +I   + R+           C++++  R G +D A  +  +   +   + W
Sbjct: 432 YSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMW 491

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMS 590
            +L+T   MH   +    A + +   G+ P+ +  ++VLL   + SG + +      ++ 
Sbjct: 492 ATLLTACRMHENLELGKLAAENLY--GMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLK 549

Query: 591 KE 592
           ++
Sbjct: 550 RK 551



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 19/259 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I         + A   + +M   G   D +T   V++ C  L S       HA + 
Sbjct: 287 WNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALV 346

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G+D+++    AL+  Y++   +  A  +F+ M +    +++SWN ++A Y   G  E 
Sbjct: 347 RRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRK---NVISWNALIAGYGNHGQGEE 403

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM-MEEAKKVFERMKVKDVV 281
            + +F +M  +  +  + V+ +  LSAC+  G   RG +    M    KV  R      +
Sbjct: 404 AVEMFEQMLREGMIP-NHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPR-----AM 457

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            +  MV    R G  ++A+ L   +R    K     W+ ++   A R H +  L      
Sbjct: 458 HYACMVELLGREGLLDEAYEL---IRSAPFKPTTNMWATLLT--ACRMHENLELGKLAAE 512

Query: 342 QFCGLEP----NVVTLVSL 356
              G+EP    N + L++L
Sbjct: 513 NLYGMEPEKLCNYIVLLNL 531


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/551 (40%), Positives = 326/551 (59%), Gaps = 15/551 (2%)

Query: 284  NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
             ++++ Y++ G    A  +F +M   +     V W+A+I  Y   G   EA+ V R    
Sbjct: 565  TSLLSLYAKCGLLHRAQRVFDEMPHPST----VPWTALITAYMDAGDLREAVHVARNAFA 620

Query: 344  CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             G+ P+  T V +L+ CA +  L  G+     T+ R    +G     + V  A +D+Y K
Sbjct: 621  NGMRPDSFTAVRVLTACARIADLATGE-----TVWRAAEQEGV-AQSVFVATAAVDLYVK 674

Query: 404  CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
            C  +  AR +FD +  +++D   W  M+G Y+ NG   +AL LF  M  Q + +KP+ + 
Sbjct: 675  CGEMAKAREVFDKM--RHKDAVAWGAMVGGYASNGHPREALDLFLAM--QAEGMKPDCYA 730

Query: 464  LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            ++ AL AC RL AL  GRQ    V  +++ +  P +   LIDMY++ G    A VVF  +
Sbjct: 731  VAGALSACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTVEAWVVFQQM 789

Query: 524  KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            ++++++ W +++ G GM G    A     QM K G+  +  TF+ LL +C+H+G++  G 
Sbjct: 790  RKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 849

Query: 584  KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            +YF +M+K + IS R EHY C+VDLL RA  L EA +L++ MPM    +I  ALL GC+I
Sbjct: 850  RYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKI 909

Query: 644  HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
            H N EL E    +L+ LE    G+Y +LSNIY+N GRW+D A++R  MK  GV+K P CS
Sbjct: 910  HRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACS 969

Query: 704  WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
            WV+ +     F VGD++HP S +IY+ L  L   +K MGY P T   + DV+DEEK   L
Sbjct: 970  WVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTL 1029

Query: 764  FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
              HSEKLA+A+ +L T PG  IR+TKNLR+C DCH+AI  +S I + EII+RD+NRFH F
Sbjct: 1030 VHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCF 1089

Query: 824  KEGSCTCKGYW 834
            ++GSC+C  YW
Sbjct: 1090 RDGSCSCNDYW 1100



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 186/455 (40%), Gaps = 49/455 (10%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNA 82
           +++  +   P      + L+    L       +Q+  ++L   +H  P H++ + +S  A
Sbjct: 514 LRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNP-HVLTSLLSLYA 572

Query: 83  PSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
               L   QR+    P P +V W  ALI   +       A  +       G  PD +T  
Sbjct: 573 KCGLLHRAQRVFDEMPHPSTVPW-TALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 631

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
            VL AC  +     G +V       G   +VFV  A + +Y +C  ++ AR++FD+M   
Sbjct: 632 RVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 691

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D V+W  +V  YA +G     L LF  M  +  ++ D  ++  ALSAC  LG    G
Sbjct: 692 ---DAVAWGAMVGGYASNGHPREALDLFLAMQAE-GMKPDCYAVAGALSACTRLGALDLG 747

Query: 260 KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           +Q                          CG   EA  VF++M+ KD++ WNAM+ G    
Sbjct: 748 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 807

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVT 352
           G  + AFAL  +M +  VKLN  T+  ++      G   +    F  M +   + P +  
Sbjct: 808 GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 867

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR- 411
              ++   +  G L   +E H       L  D   P + +++ AL+      ++ ++A  
Sbjct: 868 YGCMVDLLSRAGLL---QEAH------QLVDDMPMPANAVILGALLGGCKIHRNTELAEH 918

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
           V+   I  +  +   + ++   YS  G   DA  L
Sbjct: 919 VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 953



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 456 LVKPNAFTLSCALMACARLA-ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           L  P+  T+  AL + +RL   LR G Q+HA  L+       P V   L+ +Y++ G + 
Sbjct: 520 LPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHT-NPHVLTSLLSLYAKCGLLH 578

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHG-LGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            A+ VFD +   + V WT+L+T Y   G L +  H A +     G+ PD  T + +L AC
Sbjct: 579 RAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAF-ANGMRPDSFTAVRVLTAC 637

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +    +  G   + +  +E G++         VDL  +   + +A E+ + M      + 
Sbjct: 638 ARIADLATGETVWRAAEQE-GVAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RHKDAVA 695

Query: 634 WVALLNG 640
           W A++ G
Sbjct: 696 WGAMVGG 702


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/551 (40%), Positives = 326/551 (59%), Gaps = 15/551 (2%)

Query: 284  NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
             ++++ Y++ G    A  +F +M   +     V W+A+I  Y   G   EA+ V R    
Sbjct: 589  TSLLSLYAKCGLLHRAQRVFDEMPHPST----VPWTALITAYMDAGDLREAVHVARNAFA 644

Query: 344  CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             G+ P+  T V +L+ CA +  L  G+     T+ R    +G     + V  A +D+Y K
Sbjct: 645  NGMRPDSFTAVRVLTACARIADLATGE-----TVWRAAEQEGV-AQSVFVATAAVDLYVK 698

Query: 404  CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
            C  +  AR +FD +  +++D   W  M+G Y+ NG   +AL LF  M  Q + +KP+ + 
Sbjct: 699  CGEMAKAREVFDKM--RHKDAVAWGAMVGGYASNGHPREALDLFLAM--QAEGMKPDCYA 754

Query: 464  LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            ++ AL AC RL AL  GRQ    V  +++ +  P +   LIDMY++ G    A VVF  +
Sbjct: 755  VAGALSACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTVEAWVVFQQM 813

Query: 524  KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            ++++++ W +++ G GM G    A     QM K G+  +  TF+ LL +C+H+G++  G 
Sbjct: 814  RKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 873

Query: 584  KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            +YF +M+K + IS R EHY C+VDLL RA  L EA +L++ MPM    +I  ALL GC+I
Sbjct: 874  RYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKI 933

Query: 644  HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
            H N EL E    +L+ LE    G+Y +LSNIY+N GRW+D A++R  MK  GV+K P CS
Sbjct: 934  HRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACS 993

Query: 704  WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
            WV+ +     F VGD++HP S +IY+ L  L   +K MGY P T   + DV+DEEK   L
Sbjct: 994  WVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTL 1053

Query: 764  FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
              HSEKLA+A+ +L T PG  IR+TKNLR+C DCH+AI  +S I + EII+RD+NRFH F
Sbjct: 1054 VHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCF 1113

Query: 824  KEGSCTCKGYW 834
            ++GSC+C  YW
Sbjct: 1114 RDGSCSCNDYW 1124



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 186/455 (40%), Gaps = 49/455 (10%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNA 82
           +++  +   P      + L+    L       +Q+  ++L   +H  P H++ + +S  A
Sbjct: 538 LRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNP-HVLTSLLSLYA 596

Query: 83  PSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
               L   QR+    P P +V W  ALI   +       A  +       G  PD +T  
Sbjct: 597 KCGLLHRAQRVFDEMPHPSTVPW-TALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 655

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
            VL AC  +     G +V       G   +VFV  A + +Y +C  ++ AR++FD+M   
Sbjct: 656 RVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 715

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              D V+W  +V  YA +G     L LF  M  +  ++ D  ++  ALSAC  LG    G
Sbjct: 716 ---DAVAWGAMVGGYASNGHPREALDLFLAMQAE-GMKPDCYAVAGALSACTRLGALDLG 771

Query: 260 KQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
           +Q                          CG   EA  VF++M+ KD++ WNAM+ G    
Sbjct: 772 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 831

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVT 352
           G  + AFAL  +M +  VKLN  T+  ++      G   +    F  M +   + P +  
Sbjct: 832 GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 891

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR- 411
              ++   +  G L   +E H       L  D   P + +++ AL+      ++ ++A  
Sbjct: 892 YGCMVDLLSRAGLL---QEAH------QLVDDMPMPANAVILGALLGGCKIHRNTELAEH 942

Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
           V+   I  +  +   + ++   YS  G   DA  L
Sbjct: 943 VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 977



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 456 LVKPNAFTLSCALMACARLA-ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           L  P+  T+  AL + +RL   LR G Q+HA  L+       P V   L+ +Y++ G + 
Sbjct: 544 LPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHT-NPHVLTSLLSLYAKCGLLH 602

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHG-LGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
            A+ VFD +   + V WT+L+T Y   G L +  H A +     G+ PD  T + +L AC
Sbjct: 603 RAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAF-ANGMRPDSFTAVRVLTAC 661

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +    +  G   + +  +E G++         VDL  +   + +A E+ + M      + 
Sbjct: 662 ARIADLATGETVWRAAEQE-GVAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RHKDAVA 719

Query: 634 WVALLNG 640
           W A++ G
Sbjct: 720 WGAMVGG 726


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/559 (40%), Positives = 326/559 (58%), Gaps = 45/559 (8%)

Query: 313 LNVVTWSAVIAGYAQ-----RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           L    W+ +I  + Q      G  H  + +F +M+F G++P+  T   LL   AS   L 
Sbjct: 22  LESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLH 81

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------ 421
           LG+  H   ++  L++D        V  +LI MY+ C ++  AR +FD I   +      
Sbjct: 82  LGRSVHAQILRFGLAIDP------FVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNS 135

Query: 422 -----------------------RDVATWTVMIGSYSQNGGANDALALFPQM-FQQDKLV 457
                                  R+V +W+ MI  Y + G   +ALALF +M       V
Sbjct: 136 IINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 195

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSGDIDTA 516
           +PN FT+S  L AC RL AL  G+  HAY+  ++  M +  V    LIDMY++ G ++ A
Sbjct: 196 RPNEFTMSGVLAACGRLGALEHGKWAHAYI--DKCGMPVDVVLGTALIDMYAKCGSVEKA 253

Query: 517 RVVFDNL-KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
             VF NL   ++V++W+++++G  MHGL ++    F +M  +G+ P+ VTFL +  AC H
Sbjct: 254 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 313

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G+V +G  Y   M++++ I    +HY C+VDL GRA R+ EA  +++ MPMEP  ++W 
Sbjct: 314 GGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWG 373

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL+G R+H ++E  ELA  +L+ELE    G+Y LLSN+YA  GRW+DV  +R LM+  G
Sbjct: 374 ALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMG 433

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD 755
           +KK PGCS ++       FFVGD +HP++++I+ +L  +++R+K  GYV  T   L D+D
Sbjct: 434 IKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLD 493

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +E K   L  HSEKLALAYG L T+PGTPIRI KNLRIC DCH AI  IS + + EII+R
Sbjct: 494 EEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVR 553

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D NRFHHF +G C+C+ YW
Sbjct: 554 DCNRFHHFTQGLCSCRDYW 572



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 168/380 (44%), Gaps = 63/380 (16%)

Query: 101 FWWNALIRRAVRLRL-----PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           F WN LIR  V+ R        +   +F++M   G  PD +TFPF+L++         G 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM---------------FQPG 200
           SVHA I   G   + FV  +L++MY+ C  L +ARQ+FDE+               FQ G
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAG 144

Query: 201 ICD-------------IVSWNTIVAAYAQSGDAEGGLMLF--ARMTGDVKVQGDGVSLVN 245
           + D             ++SW+ ++  Y + G  +  L LF   +M G   V+ +  ++  
Sbjct: 145 LVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSG 204

Query: 246 ALSACASLGTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
            L+AC  LG    GK       +CGM              DVV   A++  Y++ GS E 
Sbjct: 205 VLAACGRLGALEHGKWAHAYIDKCGM------------PVDVVLGTALIDMYAKCGSVEK 252

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  +F  +       +V+ WSA+I+G A  G   E + +F +M   G+ PN VT +++  
Sbjct: 253 ATWVFSNLGPNK---DVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFC 309

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C   G +  GK+       R ++ D S    +     ++D+Y +   +  A  +  ++ 
Sbjct: 310 ACVHGGLVSEGKD-----YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSM- 363

Query: 419 PKNRDVATWTVMIGSYSQNG 438
           P   DV  W  ++     +G
Sbjct: 364 PMEPDVLVWGALLSGSRMHG 383



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 37/305 (12%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWH---PDEYTFPFVLKACGELPSSRCGSSVHA 159
           W+ +I   VR      A  LF +M   G +   P+E+T   VL ACG L +   G   HA
Sbjct: 164 WSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHA 223

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            I   G   +V +  AL+ MYA+C ++  A  +F  +      D+++W+ +++  A  G 
Sbjct: 224 YIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNK--DVMAWSAMISGLAMHGL 281

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------- 260
           AE  + LF++M     V+ + V+ +    AC   G  S GK                   
Sbjct: 282 AEECVGLFSKMINQ-GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHY 340

Query: 261 --------QCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                   + G ++EA  V + M ++ DV+ W A+++G    G  E      KK+  E  
Sbjct: 341 GCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL-IELE 399

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
             N   +  +   YA+RG   +   V   M+  G++   V   SL+     +    +G +
Sbjct: 400 PTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKK--VPGCSLIEVGGVLHEFFVGDD 457

Query: 372 THCYT 376
           +H  T
Sbjct: 458 SHPET 462


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/733 (34%), Positives = 400/733 (54%), Gaps = 38/733 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++   V       A +L+ +M++ G  P+E+TF  +L A   L  +  G  VHA + 
Sbjct: 185 WTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNY-GKLVHAHLM 243

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + N+ +  AL+ MY +C ++  A ++     +    D+  W  I++ + QS     
Sbjct: 244 MWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLE---YDVFLWTAIISGFTQSLKFRE 300

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +  F  M     V  +  +    L+AC+S+     GKQ      ++ V   ++  DV  
Sbjct: 301 AITAFHEMETS-GVVPNNFTYSGILNACSSILALDLGKQI----HSRVVMAGLE-NDVSV 354

Query: 283 WNAMVTGYSRIGS-FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            N++V  Y +  +  EDA   F+ +   NV    ++W+++IAG+++ G   E++ VF  M
Sbjct: 355 GNSLVDMYMKCSNMIEDAVRAFRGIASPNV----ISWTSLIAGFSEHGLEEESIKVFGAM 410

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           Q  G+ PN  TL ++L  C ++ +L   ++ H Y IK       +  +D++V NAL+D Y
Sbjct: 411 QGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKN------NADNDVVVGNALVDAY 464

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           A    VD A  +   +  K+RDV T+T +    +Q G    AL +   M + D  V+ + 
Sbjct: 465 AGLGMVDDAWHVTSMM--KHRDVITYTSLATRINQTGNHEMALNIITHMNKDD--VRMDG 520

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           F+L+  L A A +  +  G+Q+H Y +++     I  V+N L+D+Y + G I  A   F 
Sbjct: 521 FSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWIS-VSNGLVDLYGKCGCIHDAHRSFL 579

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            + + + VSW  L+ G   +G    A  AF+ MR  G+ PD +T L++LYACSH G+VD 
Sbjct: 580 EITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDM 639

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           GL YF SM ++ GI  + +HY C+VDLLGRA RL+EA+ +IE MP +P  +I+  LL  C
Sbjct: 640 GLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGAC 699

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           ++H N+ LGE  A + LEL+      Y LL+N+Y ++GR +   + R +M+  GV+K PG
Sbjct: 700 KLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPG 759

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            SW++ +     F  GD +HPQ  KI+E +  L+ + +  G   Q + AL          
Sbjct: 760 QSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRALA--------- 810

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
               HSEKLA+A+G+++T P  PIRI KN+RIC DCH  I  ++ +++ EII+RD NRFH
Sbjct: 811 ---HHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFH 867

Query: 822 HFKEGSCTCKGYW 834
            FK+G C+C+GYW
Sbjct: 868 SFKKGECSCRGYW 880



 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 165/575 (28%), Positives = 283/575 (49%), Gaps = 29/575 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  L+    ++   + A  LF  M+  G +P+E+T    L++C  L     G+   A++ 
Sbjct: 84  WTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVT 143

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGFDSN  + +AL+  Y++C     A ++F+ M      DIVSW  +V+++ ++G    
Sbjct: 144 KSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNG---DIVSWTMMVSSFVEAGSWSQ 200

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L L+ RM     V  +  + V  L+A + LG        G +  A  +  R+++  V+ 
Sbjct: 201 ALQLYHRMI-QTGVAPNEFTFVKLLAASSFLGL-----NYGKLVHAHLMMWRIELNLVLK 254

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             A+V  Y +  S EDA     K+ +  ++ +V  W+A+I+G+ Q     EA+  F +M+
Sbjct: 255 -TALVDMYCKCQSIEDAV----KVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEME 309

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+ PN  T   +L+ C+S+ AL LGK+ H   +   L       +D+ V N+L+DMY 
Sbjct: 310 TSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLE------NDVSVGNSLVDMYM 363

Query: 403 KCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           KC + ++ A   F  IA  N  V +WT +I  +S++G   +++ +F  M  Q   V+PN+
Sbjct: 364 KCSNMIEDAVRAFRGIASPN--VISWTSLIAGFSEHGLEEESIKVFGAM--QGVGVRPNS 419

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           FTLS  L AC  + +L   R++H Y+++N  +  +  V N L+D Y+  G +D A  V  
Sbjct: 420 FTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDV-VVGNALVDAYAGLGMVDDAWHVTS 478

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +K R+V+++TSL T     G  + A      M K+ +  DG +    L A +   +++ 
Sbjct: 479 MMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMET 538

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G K     S + G+ +       +VDL G+   + +A      +  EP  + W  L+ G 
Sbjct: 539 G-KQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEIT-EPDAVSWNGLIFGL 596

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
             + +V    L+A   + L   +    T L  +YA
Sbjct: 597 ASNGHVS-SALSAFEDMRLAGVEPDQITCLLVLYA 630



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 217/455 (47%), Gaps = 86/455 (18%)

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWN 208
           S R G  +H+ I   GF  ++F+ N L+++Y +C  ++ ARQLFDEM  P  C D+ SW 
Sbjct: 30  SVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEM--P--CRDVASWT 85

Query: 209 TIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRG------- 259
            +++AY + G+ E  L LF  M  +G+   +    +L  AL +C++L  ++ G       
Sbjct: 86  MLMSAYGKIGNHEEALELFDSMLISGEYPNE---FTLSTALRSCSALREFNHGTRFQALV 142

Query: 260 -------------------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAF 300
                               +CG  +EA +VFE M   D+VSW  MV+ +   GS+  A 
Sbjct: 143 TKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQAL 202

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360
            L+ +M Q                                    G+ PN  T V LL+  
Sbjct: 203 QLYHRMIQ-----------------------------------TGVAPNEFTFVKLLAAS 227

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV-DVARVMFDAIAP 419
           + +G L  GK  H + +   + +      +L++  AL+DMY KC+S+ D  +V   +   
Sbjct: 228 SFLG-LNYGKLVHAHLMMWRIEL------NLVLKTALVDMYCKCQSIEDAVKV---SKLT 277

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
              DV  WT +I  ++Q+    +A+  F +M  +   V PN FT S  L AC+ + AL  
Sbjct: 278 LEYDVFLWTAIISGFTQSLKFREAITAFHEM--ETSGVVPNNFTYSGILNACSSILALDL 335

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSR-SGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
           G+QIH+ V+    E  +  V N L+DMY + S  I+ A   F  +   NV+SWTSL+ G+
Sbjct: 336 GKQIHSRVVMAGLENDVS-VGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGF 394

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
             HGL +++   F  M+  G+ P+  T   +L AC
Sbjct: 395 SEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 8/252 (3%)

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           +D+ + N L+ +Y KC  V  AR +FD +    RDVA+WT+++ +Y + G   +AL LF 
Sbjct: 48  EDMFLSNNLLSLYGKCFGVAEARQLFDEMPC--RDVASWTMLMSAYGKIGNHEEALELFD 105

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
            M    +   PN FTLS AL +C+ L     G +  A V ++ ++   P + + LID YS
Sbjct: 106 SMLISGEY--PNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDS-NPVLGSALIDFYS 162

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G    A  VF+ +   ++VSWT +++ +   G   +A   + +M + G+AP+  TF+ 
Sbjct: 163 KCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVK 222

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           LL A S  G+    L +   M     ++   +    +VD+  +   +++AV+ +  + +E
Sbjct: 223 LLAASSFLGLNYGKLVHAHLMMWRIELNLVLK--TALVDMYCKCQSIEDAVK-VSKLTLE 279

Query: 629 PTPIIWVALLNG 640
               +W A+++G
Sbjct: 280 YDVFLWTAIISG 291



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 21/335 (6%)

Query: 41  SLLLRQCKSLTQVYL---IHQQIIVQNLTH--VPPSHLIAAYVS-HNAPSPALSLLQRIS 94
           S +L  C S+  + L   IH ++++  L +     + L+  Y+   N    A+   + I+
Sbjct: 321 SGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIA 380

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
            SP +V  W +LI       L + + ++F  M   G  P+ +T   +L ACG + S    
Sbjct: 381 -SP-NVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQT 438

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +H  I  +  D++V V NAL+  YA    +  A  +   M      D++++ ++    
Sbjct: 439 RKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHR---DVITYTSLATRI 495

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            Q+G+ E  L +   M  D  V+ DG SL + LSA A +     GKQ         +   
Sbjct: 496 NQTGNHEMALNIITHMNKD-DVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSW 554

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           + V      N +V  Y + G   DA   F ++ +     + V+W+ +I G A  GH   A
Sbjct: 555 ISVS-----NGLVDLYGKCGCIHDAHRSFLEITEP----DAVSWNGLIFGLASNGHVSSA 605

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           L  F  M+  G+EP+ +T + +L  C+  G + +G
Sbjct: 606 LSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMG 640



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           ++R G  IH+ +++  ++  + F++N L+ +Y +   +  AR +FD +  R+V SWT LM
Sbjct: 30  SVRDGICIHSPIIKMGFQEDM-FLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLM 88

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           + YG  G  ++A   FD M   G  P+  T    L +CS     + G + F ++  + G 
Sbjct: 89  SAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTR-FQALVTKSGF 147

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGM 625
            +     + ++D   +     EA  + E M
Sbjct: 148 DSNPVLGSALIDFYSKCGCTQEAYRVFEYM 177


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/521 (40%), Positives = 320/521 (61%), Gaps = 12/521 (2%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           ++ +W+++IAGYAQ     EAL +   M     +PN  T  SLL    +  +  +G++ H
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 64

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             T+K          DD+ V +AL+DMYA+C  +D+A  +FD +  KN    +W  +I  
Sbjct: 65  ALTVKY------DWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG--VSWNALIAG 116

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           +++ G     L +F +M  Q    +   FT S    A A + AL  G+ +HA+++++  E
Sbjct: 117 FARKGDGETTLLMFAEM--QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG-E 173

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
            L  FV N ++DMY++SG +  AR VFD++ ++++V+W S++T +  +GLG +A   F++
Sbjct: 174 RLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEE 233

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           MRK G+  + +TFL +L ACSH G+V +G +YFD M KE  +    +HY  +VDLLGRA 
Sbjct: 234 MRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLGRAG 292

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            L++A+  I  MPM+PT  +W ALL  CR+H N ++G+ AA+ + EL+ +  G   LL N
Sbjct: 293 LLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYN 352

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IYA+ G+W   AR+R +MK TGVKK P CSWV+ +     F   D THP+S++IY+    
Sbjct: 353 IYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEE 412

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           +  +I+  GYVP T + L  VD++E+   L  HSEK+ALA+ ++    G  IRI KN+RI
Sbjct: 413 ISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRI 472

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CGDCHSA  +IS +   EI++RD+NRFHHF  GSC+C  YW
Sbjct: 473 CGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 17/271 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +LI    +  +PD A  L L M+R  + P+ +TF  +LKA G   SS  G  +HA+  
Sbjct: 9   WTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 68

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
              +  +V+V +AL+ MYARC  +  A  +FD++      + VSWN ++A +A+ GD E 
Sbjct: 69  KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK---NGVSWNALIAGFARKGDGET 125

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMKVKDV 280
            L++FA M  +   +    +  +  SA A +G   +GK     M++  +++         
Sbjct: 126 TLLMFAEMQRN-GFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERL-------SA 177

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              N ++  Y++ GS  DA  +F  +     K ++VTW++++  +AQ G G EA+  F +
Sbjct: 178 FVGNTILDMYAKSGSMIDARKVFDHVD----KKDLVTWNSMLTAFAQYGLGREAVTHFEE 233

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           M+ CG+  N +T +S+L+ C+  G +  GK+
Sbjct: 234 MRKCGVHLNQITFLSILTACSHGGLVKEGKQ 264



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 161/396 (40%), Gaps = 76/396 (19%)

Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ- 261
           D+ SW +++A YAQ+ D     +         + + +G +  + L A  +  +   G+Q 
Sbjct: 5   DMCSWTSLIAGYAQN-DMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 63

Query: 262 -------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
                                    CG M+ A  VF++++ K+ VSWNA++ G++R G  
Sbjct: 64  HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 123

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           E    +F +M++                                    G E    T  S+
Sbjct: 124 ETTLLMFAEMQRN-----------------------------------GFEATHFTYSSV 148

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
            S  A +GAL  GK  H + IK    +         V N ++DMYAK  S+  AR +FD 
Sbjct: 149 FSAIAGIGALEQGKWVHAHMIKSGERLSA------FVGNTILDMYAKSGSMIDARKVFDH 202

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +  K  D+ TW  M+ +++Q G   +A+  F +M +    V  N  T    L AC+    
Sbjct: 203 VDKK--DLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG--VHLNQITFLSILTACSHGGL 258

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFDNLKQRNVVSWTSLM 535
           ++ G+Q    +  +  E  I      ++D+  R+G ++ A V +F    +     W +L+
Sbjct: 259 VKEGKQYFDMMKEHNLEPEIDHYVT-VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
               MH       +A D + +  L PD     VLLY
Sbjct: 318 GSCRMHKNAKIGQFAADHVFE--LDPDDTGPPVLLY 351



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  R++ SWTSL+ GY  + + D+A      M +    P+G TF  LL A   S     G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +   +++ ++         + ++D+  R  R+D A+ + + +      + W AL+ G
Sbjct: 61  -EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE-SKNGVSWNALIAG 116


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/702 (36%), Positives = 388/702 (55%), Gaps = 39/702 (5%)

Query: 142 LKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           L++CG     R G  +HA ++ S    ++ F+ N L+ MY+ C  +  A +LFD M +P 
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRP- 82

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSR 258
             ++VSW T+V+   Q+      L  F+ M   G V  Q    S   A +A A+    ++
Sbjct: 83  --NLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQ 140

Query: 259 ----GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
               G + G   E   +F    + D+         YS+ G   +A  +F +M Q++    
Sbjct: 141 LHCVGVRLGFDAE---LFVASNLADM---------YSKSGLLVEACRVFDQMPQKDA--- 185

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETH 373
            V W+A+I GYA+ G+   A+  FR M+  GL   +   L S+LS    +    L +  H
Sbjct: 186 -VAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIH 244

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD-VARVMFDAIAPKNRDVATWTVMIG 432
              +K           ++ V NAL DMYAK   +D  ARV+   I   + +V + T +I 
Sbjct: 245 SCVMK------SGFEQEVAVRNALTDMYAKAADMDNAARVV--KIDQGSLNVVSATSLID 296

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
            Y +      AL +F ++ +Q   V+PN FT S  +  CA  A L  G Q+HA V++   
Sbjct: 297 GYIETDCIEKALLMFIELRRQG--VEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSL 354

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
            +   FV++ L+DMY + G I  +  +F  ++    ++W + +     HG G +A  AFD
Sbjct: 355 -ISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFD 413

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M   G+ P+ +TF+ LL ACSH+G+VD+GLKYF SM    GI  + EHY+CI+D+ GRA
Sbjct: 414 RMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRA 473

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            RLDEA + I  MP++P    W +LL  CR+  N ELGE+AA+ +++LE +  G +  LS
Sbjct: 474 GRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLS 533

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
            IYA+ G+W+DV  +R LM+   +KK PG SWV   + T  F   D +HPQ +KIYE L 
Sbjct: 534 GIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLE 593

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L +RIK  GYVP T F   +++D  K  +L  HSE++A+A+ +++     PI + KNLR
Sbjct: 594 ELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLR 653

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IC DCHSA+ FIS + N +II+RD++RFHHF +G C+C  YW
Sbjct: 654 ICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 142/504 (28%), Positives = 231/504 (45%), Gaps = 32/504 (6%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +HLI  Y SH A  P+   L    P P ++  W  L+    +  +  +A   F  M R G
Sbjct: 57  NHLITMY-SHCADVPSAVRLFDAMPRP-NLVSWTTLVSGLTQNSMHRDALAAFSSMCRAG 114

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P ++      +A   L +   G+ +H V    GFD+ +FV + L  MY++   L  A 
Sbjct: 115 LVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEAC 174

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           ++FD+M Q    D V+W  ++  YA++G+ E  ++ F  M  +  V  D   L + LSA 
Sbjct: 175 RVFDQMPQK---DAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231

Query: 251 ASL--GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
             L  G  +R     +M   K  FE    ++V   NA+   Y++    ++A  + K    
Sbjct: 232 GGLKDGWLARAIHSCVM---KSGFE----QEVAVRNALTDMYAKAADMDNAARVVKI--- 281

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           +   LNVV+ +++I GY +     +AL +F +++  G+EPN  T  S++ GCA    L  
Sbjct: 282 DQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQ 341

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G + H   IK  L  D        V + L+DMY KC  + ++  +F  I   + D+A W 
Sbjct: 342 GAQLHAEVIKTSLISDS------FVSSTLLDMYGKCGLISLSIQLFKEI-EYHTDIA-WN 393

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
             I   +Q+G   +A+  F +M      ++PN  T    L AC+    +  G + + Y +
Sbjct: 394 AAINVLAQHGHGREAIRAFDRMTSSG--IRPNHITFVSLLTACSHAGLVDEGLK-YFYSM 450

Query: 489 RNQYEMLIPFVA-NCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDK 546
           ++ + +       +C+IDMY R+G +D A      +  + N   W SL+    M G  + 
Sbjct: 451 KDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKEL 510

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL 570
              A D M K  L PD     V L
Sbjct: 511 GEIAADNMMK--LEPDNTGVHVSL 532



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 145/345 (42%), Gaps = 55/345 (15%)

Query: 92  RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS 151
           +I     +V    +LI   +     + A  +F+++ R+G  P+E+TF  ++K C      
Sbjct: 280 KIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALL 339

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDIVSWNTI 210
             G+ +HA +  +   S+ FV + L+ MY +C  +S + QLF E+ +   I    +WN  
Sbjct: 340 EQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDI----AWNAA 395

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
           +   AQ G     +  F RMT    ++ + ++ V+ L+AC+           G+++E  K
Sbjct: 396 INVLAQHGHGREAIRAFDRMTSS-GIRPNHITFVSLLTACS---------HAGLVDEGLK 445

Query: 271 VFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
            F  MK    +      ++ ++  Y R G  ++A     +M    VK N   W +++   
Sbjct: 446 YFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEM---PVKPNAYGWCSLLG-- 500

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC-ASVGA------------------- 365
           A R  G++ L          LEP+   +   LSG  AS+G                    
Sbjct: 501 ACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKL 560

Query: 366 -----LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
                +   K+TH +      S D SHP    +   L ++Y + K
Sbjct: 561 PGFSWVDSNKKTHVFG-----SEDWSHPQQEKIYEKLEELYERIK 600



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 3/224 (1%)

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            +  L+  L +C R   LR GR +HA ++ +       F+AN LI MYS   D+ +A  +
Sbjct: 16  TSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRL 75

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD + + N+VSWT+L++G   + +   A  AF  M + GL P          A +     
Sbjct: 76  FDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAAR 135

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
             G +    +    G  A     + + D+  ++  L EA  + + MP +   + W A+++
Sbjct: 136 HAGAQ-LHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMP-QKDAVAWTAMID 193

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
           G   + N+E   + A R +  E        +L ++ + +G  KD
Sbjct: 194 GYAKNGNLE-AAVIAFRDMRREGLVGADQHVLCSVLSASGGLKD 236


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 293/444 (65%), Gaps = 6/444 (1%)

Query: 393 VINALIDMYAKCKSVDV--ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           V N +ID YAK    D+  AR +FD +   +RDV +W  MI  Y+QNG + +AL L+ +M
Sbjct: 229 VANTIIDAYAKGGGHDLGAARKLFDMM---DRDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                 V+ NA TLS  L+ACA   A++ G++IH  V+R   E  + +V   ++DMYS+ 
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNV-YVGTSVVDMYSKC 344

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G ++ A   F  +K +N++SW++++ GYGMHG G +A   F  MRK GL P+ +TF+ +L
Sbjct: 345 GKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVL 404

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            ACSH+G++ +G  ++++M  EFGI    EHY C+VDLLGRA  LDEA  LI+ M ++P 
Sbjct: 405 AACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 464

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
             +W ALL+ CRI+ NVEL ++ A RL EL++   G Y LLSNIYA AG WK+V R+R L
Sbjct: 465 AALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVL 524

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           +K  G++K PG S V+ K  T  F+VGD++HPQ ++IY  L  L++RI   GYVP T   
Sbjct: 525 VKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSV 584

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHD+D EE+  +L  HSEKLA+A+ ++ +  G+ I + KNLR+C DCH+AI  I+ +   
Sbjct: 585 LHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGR 644

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EII+RD  RFHHFK+G C+C  YW
Sbjct: 645 EIIIRDLKRFHHFKDGLCSCGDYW 668



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 134/291 (46%), Gaps = 43/291 (14%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVLKACGELPSS 151
           +P+P  V    A+    +R  L      +F  M+  G     DE      L A   +P  
Sbjct: 152 TPNPVIV---TAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDR 208

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCD--TLSYARQLFDEMFQPGICDIVSWNT 209
                +HA++   G D    V N ++  YA+     L  AR+LFD M +    D+VSWNT
Sbjct: 209 GITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDR----DVVSWNT 264

Query: 210 IVAAYAQSGDAEGGLMLFARMT---GDVKVQGDGVSLVNALSACASLGTWSRGK------ 260
           ++A YAQ+G +   L L+++M    GDV+   + V+L   L ACA  G    GK      
Sbjct: 265 MIALYAQNGLSTEALGLYSKMLIVGGDVRC--NAVTLSAVLLACAHAGAIQTGKRIHNQV 322

Query: 261 --------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAF 300
                               +CG +E A K F+++K K+++SW+AM+ GY   G  ++A 
Sbjct: 323 VRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEAL 382

Query: 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-CGLEPNV 350
            +F  MR+  +K N +T+  V+A  +  G   E    +  M+   G+EP V
Sbjct: 383 HVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGV 433



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 23/231 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVLKACGELPSSRCGSSV 157
           V  WN +I    +  L   A  L+ +M+  G     +  T   VL AC    + + G  +
Sbjct: 259 VVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRI 318

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   G + NV+V  +++ MY++C  +  A + F ++      +I+SW+ ++A Y   
Sbjct: 319 HNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGK---NILSWSAMIAGYGMH 375

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G  +  L +F  M     ++ + ++ +  L+AC+           G++ E +  +  MK 
Sbjct: 376 GYGQEALHVFTDMRKS-GLKPNYITFITVLAACS---------HAGLLSEGRYWYNTMKT 425

Query: 278 K-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           +      V  +  MV    R G  ++A+ L K+M+   VK +   W A+++
Sbjct: 426 EFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMK---VKPDAALWGALLS 473


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/822 (30%), Positives = 412/822 (50%), Gaps = 88/822 (10%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR--- 129
           +I A VS +  S A  L   +         W  +I    +      +F  F  M+R    
Sbjct: 80  MIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTND 139

Query: 130 -GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            G + D ++F  V+KACG L  SR    +HA++   GF     + N+++ MY +C  +  
Sbjct: 140 GGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDL 199

Query: 189 ARQLFDEMFQPGI-C---------------------------DIVSWNTIVAAYAQSGDA 220
           A  +F ++ +P + C                           D VSWNT+++ ++Q G  
Sbjct: 200 AETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFG 259

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L +F  M        + ++  + LSACAS      G          ++       D+
Sbjct: 260 VQCLAMFVEMCNQ-GFSPNFMTYGSVLSACASTSDLKWGAHL-----HARILRMEHSLDL 313

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           V  N ++  Y++ G  + A  +FK +R+ +     ++W+++I G    G G +AL +F Q
Sbjct: 314 VFGNGLIDMYAKCGCLDLAKRVFKSLREHDH----ISWNSLITGVVHFGLGEDALILFNQ 369

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+   +  +   L ++L  C+       G+  H YTIK    +  S P    V NA+I M
Sbjct: 370 MRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS--GMGSSAP----VGNAIITM 423

Query: 401 YAKCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMI 431
           YAKC   D A ++F  +  +N                             R++ TW  M+
Sbjct: 424 YAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSML 483

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            +Y QNG + + L L+  M  +   V+P+  T + ++ ACA LA ++ G Q+  +  +  
Sbjct: 484 STYVQNGFSEEGLKLYVSM--RSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFG 541

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             + +  VAN ++ MYSR G I  A+  FD++  ++++SW +++  +  +GLG K    F
Sbjct: 542 LSLNVS-VANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTF 600

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           + M K    P+ ++++ +L  CSH G+V +G  YFDSM++ FGIS   EH++C+VDLLGR
Sbjct: 601 EDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGR 660

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  L++A +LIEGMP +P   +W ALL  CR+H ++ L E AA +L+EL+ E    Y LL
Sbjct: 661 AGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLL 720

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+Y+ +G   +VA +R LMK  G++   GCSW++       F V + +HPQ +++Y  L
Sbjct: 721 SNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKL 780

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             +++ I+  G       ++H             HSEKLA A+G+L      PI + KNL
Sbjct: 781 EEMMKMIEDTGKYITVESSVHRSKK--------YHSEKLAFAFGLLNLPSWMPIHVMKNL 832

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           R+C DCH  I  +S++ + E+I+RD  RFHHFK+G C+CK Y
Sbjct: 833 RVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 158/573 (27%), Positives = 248/573 (43%), Gaps = 109/573 (19%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARC-------------------------------DT 185
           +HA +  SG DS++F+ N L+ MY+ C                                 
Sbjct: 30  LHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSR 89

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVS 242
           +S A +LFDEM    + D VSW T+++ Y+Q+G        F+ M  D    G   D  S
Sbjct: 90  MSDAEKLFDEM-PVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFS 148

Query: 243 LVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMK 276
             + + AC SLG      Q                          CG ++ A+ VF  ++
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
              +  WN+M+ GYS++     A  +F +M +     + V+W+ +I+ ++Q G G + L 
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPER----DEVSWNTLISIFSQHGFGVQCLA 264

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F +M   G  PN +T  S+LS CAS   L  G   H     R+L ++  H  DL+  N 
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHA----RILRME--HSLDLVFGNG 318

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LIDMYAKC  +D+A+ +F ++  +  D  +W  +I      G   DAL LF QM +    
Sbjct: 319 LIDMYAKCGCLDLAKRVFKSL--REHDHISWNSLITGVVHFGLGEDALILFNQMRRSS-- 374

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY--------- 507
           V  + F L   L  C+       G  +H Y +++      P V N +I MY         
Sbjct: 375 VVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAP-VGNAIITMYAKCGDTDKA 433

Query: 508 ----------------------SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
                                 SRSGDI  AR  FD + +RN+V+W S+++ Y  +G  +
Sbjct: 434 DLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSE 493

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +    +  MR  G+ PD +TF   + AC+   +V  G++     +K FG+S        I
Sbjct: 494 EGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK-FGLSLNVSVANSI 552

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V +  R   + EA    + +  +   I W A+L
Sbjct: 553 VTMYSRCGLIKEAKNTFDSID-DKDLISWNAML 584



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 50/295 (16%)

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
           +H  ++   N +I        +  A  +FD +  + +D  +WT MI  YSQNG  + +  
Sbjct: 69  THHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFE 128

Query: 446 LFPQMFQ--QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
            F  M +   D     + F+ +  + AC  L   R   Q+HA V +  + M    + N +
Sbjct: 129 TFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETC-IQNSV 187

Query: 504 IDMYSRSGDIDTARVV-------------------------------FDNLKQRNVVSWT 532
           + MY + GD+D A  V                               F+ + +R+ VSW 
Sbjct: 188 VGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWN 247

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG-------LKY 585
           +L++ +  HG G +    F +M  +G +P+ +T+  +L AC+ +  +  G       L+ 
Sbjct: 248 TLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRM 307

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
             S+   FG          ++D+  +   LD A  + + +  E   I W +L+ G
Sbjct: 308 EHSLDLVFGNG--------LIDMYAKCGCLDLAKRVFKSLR-EHDHISWNSLITG 353


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/494 (41%), Positives = 312/494 (63%), Gaps = 9/494 (1%)

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G+E N VT V++LSG  + G+L  G+  H       L VD      ++V  AL++M
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVD------VIVGTALVNM 54

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y KC+SV+ AR  F+ I+  N  V +W+ M+ +Y+QNG A  AL L+ +M    K + PN
Sbjct: 55  YGKCQSVEEARAAFEKISRPN--VVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPN 112

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T    L AC+ L AL  GR+IHA V    ++  +  V N L++ Y R G +  A++VF
Sbjct: 113 RVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDL-VVCNALVNFYGRCGSLGDAKIVF 171

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D +++R+V+SW+S+++ +   G  D+A   + +M  EG  PD + F+ +L+ACS+SG+V+
Sbjct: 172 DGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVE 231

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
               +F S+  +  +    EHYAC+VD+LGRA +L +A +L+  MP  P P++++ +L+ 
Sbjct: 232 ASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSA 291

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           C+++ +VE GE AA  + EL+ E    Y  L+NIY+ A R KD ARIR LM+  G+KK+P
Sbjct: 292 CKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKP 351

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW++  +    F  GD+ HPQ  +IY  +  L +++K  GY   T   L DV+++EK 
Sbjct: 352 GCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKE 411

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           +LL+ HSEKLA+A+G+++T PG P+RI KNLR+C DCH+A   IS +   EI++RD+NRF
Sbjct: 412 NLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRF 471

Query: 821 HHFKEGSCTCKGYW 834
           HHF +G C+C  YW
Sbjct: 472 HHFLDGMCSCNDYW 485



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
           RG   ++ T+  VL       S   G  VH+ +  +G + +V V  AL+ MY +C ++  
Sbjct: 4   RGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEE 63

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK-VQGDGVSLVNAL 247
           AR  F+++ +P   ++VSW+ ++AAYAQ+G A   L L+  M    K +  + V+ +  L
Sbjct: 64  ARAAFEKISRP---NVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
            AC+ LG  + G++         V ER    D+V  NA+V  Y R GS  DA  +F  MR
Sbjct: 121 DACSFLGALAEGRKI-----HAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMR 175

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
           + +V    ++WS++I+ +AQRG   EA++++ +M   G  P+ +  +S+L  C++ G +
Sbjct: 176 RRDV----ISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVV 230



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 24/242 (9%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM--MRRG 130
           L+  Y    +   A +  ++IS    +V  W+A++    +      A  L+ +M   R+G
Sbjct: 51  LVNMYGKCQSVEEARAAFEKISRP--NVVSWSAMLAAYAQNGHARMALELYREMGSARKG 108

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
             P+  TF  +L AC  L +   G  +HA +   GFD+++ VCNAL+  Y RC +L  A+
Sbjct: 109 MAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAK 168

Query: 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            +FD M +    D++SW+++++A+AQ G  +  + L+ RM  +  +  D +  ++ L AC
Sbjct: 169 IVFDGMRRR---DVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLP-DDIIFISVLFAC 224

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKD------VVSWNAMVTGYSRIGSFEDAFALFK 304
           ++ G            EA   F R  V D      +  +  MV    R G   DA  L +
Sbjct: 225 SNSGVV----------EASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLR 274

Query: 305 KM 306
            M
Sbjct: 275 LM 276


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/651 (38%), Positives = 374/651 (57%), Gaps = 26/651 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++R  V+    DNA   F +M       +  T+  +L  C    +   G+ +H ++ 
Sbjct: 181 WNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVI 240

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGF+ +  V N L+AMY++C  L YAR+LF+ M Q    D V+WN ++A Y Q+G  + 
Sbjct: 241 GSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQT---DTVTWNGLIAGYVQNGFTDE 297

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVV 281
              LF  M     V+ D V+  + L +    G+    + C   +E      R +V  DV 
Sbjct: 298 AAPLFNAMI-SAGVKPDSVTFASFLPSILESGSL---RHC---KEVHSYIVRHRVPFDVY 350

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             +A++  Y + G  E A    +K+ Q+N+ ++V   +A+I+GY   G   +A++ FR +
Sbjct: 351 LKSALIDVYFKGGDVEMA----RKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWL 406

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G+  N +T+ S+L  CA+V AL  GKE HC+ +K+ L       + + V +A+ DMY
Sbjct: 407 IQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLE------NIVNVGSAITDMY 460

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC  +D+A   F  ++  +RD   W  MI S+SQNG    A+ LF QM       K ++
Sbjct: 461 AKCGRLDLAYEFFRRMS--DRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSG--AKFDS 516

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
            +LS AL A A L AL +G+++H YV+RN +     FVA+ LIDMYS+ G++  A  VF+
Sbjct: 517 VSLSSALSAAANLPALYYGKEMHGYVIRNAFSS-DTFVASTLIDMYSKCGNLALAWCVFN 575

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  +N VSW S++  YG HG   +    + +M + G+ PD VTFLV++ AC H+G+VD+
Sbjct: 576 LMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDE 635

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G+ YF  M++E+GI AR EHYAC+VDL GRA R+ EA + I+ MP  P   +W  LL  C
Sbjct: 636 GIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGAC 695

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R+H NVEL +LA+  LLEL+ +  G Y LLSN++A+AG W  V ++RSLMK  GV+K PG
Sbjct: 696 RLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPG 755

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
            SW+    GT  F   D  HP+S +IY IL  L+  ++  GYVPQ    LH
Sbjct: 756 YSWIDVNGGTHMFSAADGNHPESVEIYLILKSLLLELRKQGYVPQPYLPLH 806



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 162/530 (30%), Positives = 257/530 (48%), Gaps = 37/530 (6%)

Query: 43  LLRQCKS---LTQVYLIHQQIIVQNLTHV--PPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           L R C     + Q   +H Q+IV  +  V  P S ++  YV       A +L   +    
Sbjct: 17  LFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELR- 75

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
                WN +IR    L   D A   + +M+     PD+YTFP+V+KACG L +      V
Sbjct: 76  -YALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVV 134

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H    S GF  ++F  +AL+ +YA    +  AR++FDE+    + D + WN ++  Y +S
Sbjct: 135 HDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDEL---PLRDTILWNVMLRGYVKS 191

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMK 276
           GD +  +  F  M     +  + V+    LS CA+ G +  G Q  G++  +   F+   
Sbjct: 192 GDFDNAIGTFCEMRTSYSMV-NSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQV 250

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
                  N +V  YS+ G+   A  LF  M Q     + VTW+ +IAGY Q G   EA  
Sbjct: 251 A------NTLVAMYSKCGNLLYARKLFNTMPQT----DTVTWNGLIAGYVQNGFTDEAAP 300

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F  M   G++P+ VT  S L      G+L   KE H Y ++  +      P D+ + +A
Sbjct: 301 LFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRV------PFDVYLKSA 354

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKN--RDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           LID+Y K   V++AR +F     +N   DVA  T MI  Y  +G   DA+  F  + Q+ 
Sbjct: 355 LIDVYFKGGDVEMARKIFQ----QNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEG 410

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
            +   N+ T++  L ACA +AAL+ G+++H ++L+ + E ++  V + + DMY++ G +D
Sbjct: 411 MVT--NSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVN-VGSAITDMYAKCGRLD 467

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
            A   F  +  R+ V W S+++ +  +G  + A   F QM   G   D V
Sbjct: 468 LAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSV 517



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 114/296 (38%), Gaps = 15/296 (5%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC- 404
           L+     L SL   C+    +   ++ H   I       G   D     + ++ +Y  C 
Sbjct: 7   LDSLTTQLESLFRACSDASMVQQARQVHTQVIV------GGMGDVCAPSSRVLGLYVLCG 60

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
           +  D   + F+    + R    W  MI      G  + AL  + +M   +  V P+ +T 
Sbjct: 61  RFRDAGNLFFEL---ELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSN--VSPDKYTF 115

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
              + AC  L  +     +H       + + + F  + LI +Y+ +G I  AR VFD L 
Sbjct: 116 PYVIKACGGLNNVPLCMVVHDTARSLGFHVDL-FAGSALIKLYADNGYIRDARRVFDELP 174

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            R+ + W  ++ GY   G  D A   F +MR      + VT+  +L  C+  G    G +
Sbjct: 175 LRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQ 234

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
               +    G     +    +V +  +   L  A +L   MP   T + W  L+ G
Sbjct: 235 -LHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDT-VTWNGLIAG 288


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/519 (40%), Positives = 317/519 (61%), Gaps = 13/519 (2%)

Query: 318 WSAVIAGYAQRGHG-HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           +S +I  YA+     H A+  +  M   G+ PN      +L  CA +  L LGK  H   
Sbjct: 76  FSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSL 135

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYS 435
           +K     D    DD+ V N ++ MY  C   ++ AR +FD + PK  D  TWT MIG Y+
Sbjct: 136 VK--FGFD----DDIFVQNTMVHMYCCCSGGMEFARKLFDEM-PK-LDPVTWTAMIGGYA 187

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           + G +  A+ LF +M  Q   V P+  T+   L AC  L AL  G+ I +Y+ + +    
Sbjct: 188 RLGQSAGAVGLFRKM--QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKT 245

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  ++N L+DM+++ GD+D A  +F N+ +R +VSWTS++ G  MHG G +A   F++M+
Sbjct: 246 VE-LSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMK 304

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G+ P+ + F+ LL ACSHSG+V++G +YF  M+++FGI  + EHY C+VDLL RA  +
Sbjct: 305 ASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLV 364

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
            EA+E +E MP+EP PIIW  L++ CR+H  ++LGE  + +L+  E   + +Y LLSNIY
Sbjct: 365 TEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIY 424

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
                W+  ++IR  M   G++K PG + ++       F VGDR+H Q  +I +++  + 
Sbjct: 425 GKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMG 484

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
           + +K  GY P T+    D+D+E+K D L  HSEKLA+A+ +L T PG+PIRITKNLR+CG
Sbjct: 485 REMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCG 544

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCHSA  FIS I N EI++RD +RFHHF++G C+C  +W
Sbjct: 545 DCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 211/462 (45%), Gaps = 65/462 (14%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQR 92
           PC+ I    L+ C +L ++  +H  II     + P   +   +A  + +A   A+SL+  
Sbjct: 9   PCLDI----LQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFS 64

Query: 93  ISPSP-FSVFWWNALIRR-AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
           +  +  +  F ++ +IR  A   +   NA   +  M+  G  P++Y FPFVLKAC  L  
Sbjct: 65  VEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRD 124

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNT 209
              G +VH  +   GFD ++FV N ++ MY  C   + +AR+LFDEM  P + D V+W  
Sbjct: 125 LNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEM--PKL-DPVTWTA 181

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269
           ++  YA+ G + G + LF +M     V  D V++V+ LSAC  LG    GK      E +
Sbjct: 182 MIGGYARLGQSAGAVGLFRKMQ-IAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKE 240

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           +V + +++      NA+V  +++ G  + A  LF+ M     K  +V+W++VI G A  G
Sbjct: 241 RVLKTVELS-----NALVDMFAKCGDVDKALGLFRNMS----KRTIVSWTSVIVGLAMHG 291

Query: 330 HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
            G EA+ +F +M+  G+ P  +  + LLS C+  G +  G++      ++          
Sbjct: 292 RGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQF--------- 342

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
                                      I PK   +  +  M+   S+ G   +AL    +
Sbjct: 343 --------------------------GIVPK---IEHYGCMVDLLSRAGLVTEALEFVER 373

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
           M      ++PN       + AC     L+ G  I   ++RN+
Sbjct: 374 M-----PIEPNPIIWRTLISACRVHGELKLGESISKQLIRNE 410



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 199/408 (48%), Gaps = 32/408 (7%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+AC  LP     + +H  I   GF +N  V     +  +  D + YA  L   +    
Sbjct: 13  ILQACNTLPKL---AQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR 69

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           + D   ++TI+ AYA+S  ++   + +  +     +  +  +    L ACA L   + GK
Sbjct: 70  VYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGK 129

Query: 261 QC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRI-GSFEDAFALFKKMRQENVKLNVVTW 318
              G +   K  F+     D+   N MV  Y    G  E A  LF +M     KL+ VTW
Sbjct: 130 AVHGSL--VKFGFD----DDIFVQNTMVHMYCCCSGGMEFARKLFDEMP----KLDPVTW 179

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A+I GYA+ G    A+ +FR+MQ  G+ P+ VT+VS+LS C  +GAL LGK    Y  K
Sbjct: 180 TAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEK 239

Query: 379 -RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
            RVL         + + NAL+DM+AKC  VD A  +F  ++   R + +WT +I   + +
Sbjct: 240 ERVLKT-------VELSNALVDMFAKCGDVDKALGLFRNMS--KRTIVSWTSVIVGLAMH 290

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   +A++LF +M     +  P        L AC+    +  GRQ  + + R Q+  ++P
Sbjct: 291 GRGLEAVSLFEEMKASGMV--PEDIAFIGLLSACSHSGLVERGRQYFSEMTR-QFG-IVP 346

Query: 498 FVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
            + +  C++D+ SR+G +  A    + +  + N + W +L++   +HG
Sbjct: 347 KIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHG 394


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/686 (35%), Positives = 381/686 (55%), Gaps = 38/686 (5%)

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           S+H  I  SG     F  + L+  Y +C  ++ AR+LFDEM       IV+WN++++++ 
Sbjct: 22  SLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNR---HIVTWNSMISSHV 77

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
             G  +  + L+  M  +  V  D  +      A + +G    G++         V    
Sbjct: 78  SRGKTKEAIELYDNMLFE-GVLPDAYTFSAIFKAFSEMGVSREGQKA----HGLAVVLGF 132

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           +V D      +V  Y++ G  +DA  +F ++  ++V    V ++A+I GY QRG   EAL
Sbjct: 133 EVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDV----VLFTALIVGYNQRGLDGEAL 188

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL-SVDGSHPDDLMVI 394
           +VF  M    ++PN  TL S+L  C ++G L+ GK  H   +K  L SV  S        
Sbjct: 189 EVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQT------ 242

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L+ MY+KC  V+ +  +F+++A  +    TWT  I    QNG    AL++F +M +  
Sbjct: 243 -SLLTMYSKCNMVEDSIKVFNSLAYASH--VTWTSFIVGLVQNGREEIALSMFREMIRCS 299

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-----NQYEMLIPFVANCLIDMYSR 509
             + PN FT S  L AC+ LA L  G QIHA  ++     N+Y      V   LI +Y +
Sbjct: 300 --ISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKY------VDAALIHLYGK 351

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G+++ AR VF++L + +VVS  +++  Y  +G G +A   F++M+K G  P+ VTF+ +
Sbjct: 352 CGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISI 411

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L AC+++G+V++G + F  +     I    +HY C++DLLGRA R +EA  LIE     P
Sbjct: 412 LLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEE-GKNP 470

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
             I W  LLN C+IH  VE+ E    ++L+      G++ LL+NIYA+AG+W +V  ++S
Sbjct: 471 DVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKS 530

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
             +   +KK P  SWV       TF  GD +HP++ +I E+L  L++++  +GY P T F
Sbjct: 531 AGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKF 590

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKNLRICGDCHSAITFISMII 808
            L D+++E+K   L+ HSEKLA+A+ +  T    T IRI KNLR+CGDCHS I F+S++ 
Sbjct: 591 VLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLT 650

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
             +II RD+ RFHHFK G C+CK YW
Sbjct: 651 GRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 256/538 (47%), Gaps = 32/538 (5%)

Query: 48  KSLTQVYLIHQQIIVQ-NLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNAL 106
           KSLT +  +H  I+   +L       LI  Y+  +  + A  L   + P+   +  WN++
Sbjct: 15  KSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLFDEM-PNR-HIVTWNSM 72

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           I   V       A  L+  M+  G  PD YTF  + KA  E+  SR G   H +    GF
Sbjct: 73  ISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGF 132

Query: 167 D-SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           + S+ FV   ++ MYA+   +  AR +FD +      D+V +  ++  Y Q G     L 
Sbjct: 133 EVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDK---DVVLFTALIVGYNQRGLDGEALE 189

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWN 284
           +F  M G  +++ +  +L + L +C +LG    GK   G++   K   E +    V S  
Sbjct: 190 VFEDMVGS-RIKPNEYTLASVLVSCGNLGDLVNGKLIHGLV--VKSGLESV----VASQT 242

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           +++T YS+    ED+  +F  +       + VTW++ I G  Q G    AL +FR+M  C
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYA----SHVTWTSFIVGLVQNGREEIALSMFREMIRC 298

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
            + PN  T  S+L  C+S+  L  G++ H  T+K  L VDG+   D     ALI +Y KC
Sbjct: 299 SISPNHFTFSSILHACSSLAMLEAGEQIHAVTVK--LGVDGNKYVDA----ALIHLYGKC 352

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            +V+ AR +F+++     DV +   MI +Y+QNG  ++AL LF +M +     KPN  T 
Sbjct: 353 GNVEKARSVFESLTE--LDVVSINTMIYAYAQNGFGHEALELFERMKKLGH--KPNVVTF 408

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
              L+AC     +  G QI + +  N    L      C+ID+  R+   + A ++ +  K
Sbjct: 409 ISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK 468

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQ 581
             +V+ W +L+    +HG  + A     +M  +  AP DG T ++L    + +G  D 
Sbjct: 469 NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQ--APRDGGTHILLTNIYASAGKWDN 524


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/499 (42%), Positives = 310/499 (62%), Gaps = 13/499 (2%)

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           VF +M   G+ P+  T VSLL  CAS  A   G++ H   +K          +   V   
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVK------AGAAEHEYVAPT 178

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI+MYA+C  V  ARVMFD +      V ++  MI +  ++    +AL LF +M  Q K 
Sbjct: 179 LINMYAECGDVRAARVMFDRM--DGECVVSYNAMITASVRSSLPGEALVLFREM--QAKG 234

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP + TL   L ACA L AL  GR IH Y+ + + + L+  V   LIDMY++ G ++ A
Sbjct: 235 LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVK-VNTALIDMYAKCGSLEDA 293

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF +++ R+  +W+ +M  Y  HG G +A   F++M+K+G+ PD VTFL +LYACSHS
Sbjct: 294 IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +GL+YFDSM +E+GI +  +HY C+ DLL R+ +L+ A + I+ +P++PT I+W  
Sbjct: 354 GMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRT 412

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ C  H +V++G+    R+LEL+    G Y + SN+ AN GRW+++  +R LM   GV
Sbjct: 413 LLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGV 472

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVD 755
            K PGCS ++       FF GD +HP SQ+   ++  +++++K +GYVP TS   H ++ 
Sbjct: 473 VKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMG 532

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +EEK   L  HSEKLA+++G+L TAPGT +RI KNLR+C DCHS    +SM+ N  IILR
Sbjct: 533 EEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILR 592

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D NRFHHF++G C+C  YW
Sbjct: 593 DLNRFHHFEDGVCSCGDYW 611



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 175/374 (46%), Gaps = 27/374 (7%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR----LFLQMMRRGWHPDEYTFPFV 141
           A  +  RI P P  V W+N L+R   R             +F++MM  G  PD YTF  +
Sbjct: 86  ARQVFDRI-PHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSL 144

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LKAC    +   G   H V   +G   + +V   L+ MYA C  +  AR +FD M   G 
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM--DGE 202

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
           C +VS+N ++ A  +S      L+LF  M     ++   V+L++ LSACA LG    G+ 
Sbjct: 203 C-VVSYNAMITASVRSSLPGEALVLFREMQAK-GLKPTSVTLISVLSACALLGALELGRW 260

Query: 262 CGMMEEAKKVFERMKVKDVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                       +M++  +V  N A++  Y++ GS EDA  +F+ M   + +     WS 
Sbjct: 261 I------HDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQ----AWSV 310

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           ++  YA  G+G EA+ +F +M+  G++P+ VT + +L  C+  G +  G + +  +++  
Sbjct: 311 MMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQ-YFDSMREY 369

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             V G     +     + D+ A+   ++ A    D + P       W  ++ + + +G  
Sbjct: 370 GIVSG-----IKHYGCVTDLLARSGQLERAYKFIDEL-PIKPTAILWRTLLSACAGHGDV 423

Query: 441 NDALALFPQMFQQD 454
           +    +F ++ + D
Sbjct: 424 DMGKRVFERILELD 437



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 186/403 (46%), Gaps = 86/403 (21%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIV----AAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           L+YARQ+FD +  PG  D+V +NT++          G AE    +F RM  +  V  D  
Sbjct: 83  LAYARQVFDRIPHPG--DVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEE-GVAPDTY 139

Query: 242 SLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERM 275
           + V+ L ACAS      G+Q                          CG +  A+ +F+RM
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM 199

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             + VVS+NAM+T   R     +A  LF++M+ +                          
Sbjct: 200 DGECVVSYNAMITASVRSSLPGEALVLFREMQAK-------------------------- 233

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
                    GL+P  VTL+S+LS CA +GAL LG+  H Y  K  L       D L+ +N
Sbjct: 234 ---------GLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL-------DSLVKVN 277

Query: 396 -ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            ALIDMYAKC S++ A  +F  +  ++RD   W+VM+ +Y+ +G   +A+++F +M +Q 
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQG 335

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
             +KP+  T    L AC+    +  G Q   Y    +   ++  + +  C+ D+ +RSG 
Sbjct: 336 --MKPDDVTFLGVLYACSHSGMVSEGLQ---YFDSMREYGIVSGIKHYGCVTDLLARSGQ 390

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           ++ A    D L  +   + W +L++    HG  D     F+++
Sbjct: 391 LERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERI 433



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 15/165 (9%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            A  +F +M ++G  PD+ TF  VL AC        G      +   G  S +     + 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-DVKV 236
            + AR   L  A +  DE+  P     + W T+++A A  GD + G  +F R+   D   
Sbjct: 383 DLLARSGQLERAYKFIDEL--PIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSH 440

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
            GD V   N    CA+ G W         EE   V + M  K VV
Sbjct: 441 GGDYVIFSN---LCANTGRW---------EEMNMVRKLMSEKGVV 473


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 337/575 (58%), Gaps = 18/575 (3%)

Query: 265 MEEAKKVFERMKV----KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           MEE +++  R+ +    +  ++ N +V+ Y++ G  ++A A+F  +    ++  VV+WSA
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGI----LERTVVSWSA 56

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +I  YA  G G EAL +F +M+  G +EPN +T   + + C  +  L  G+E H      
Sbjct: 57  MIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHAL---- 112

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            ++       + ++ NAL++MY +C S++ AR +FD +   + D  +WT MI + ++N  
Sbjct: 113 AMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTM--DHPDAFSWTSMITACTENCE 170

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +AL LF +M  +   + P + TL+  L ACA   AL+ G+QIH+ +  + +   +   
Sbjct: 171 LLEALELFHRMNLEG--IPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSV-LA 227

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
              L+DMY++ G ++ +  VF  ++ RN VSWT+++     HG GD+A   F +M  EG+
Sbjct: 228 QTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGM 287

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
             D  TF+ +L ACSH+G++ + L++F SM +++ I+    HY   +D +GRA RL +A 
Sbjct: 288 VADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAE 347

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           ELI  MP  P  + W  LLN CRIH+  E     A  L +L  E   +YTLL N+YA  G
Sbjct: 348 ELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATG 407

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           R+ D  R+R  M   G+KK PG S+++ K     F  GDR HP   +I   L  L  R++
Sbjct: 408 RYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMR 467

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVP T   LH V++EEK  L+  HSEKLA+A+G++ T PGTP+ I KNLR+C DCH+
Sbjct: 468 EAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHA 527

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A   I+ I+   I++RD++RFHHF++G C+CK YW
Sbjct: 528 ATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 216/446 (48%), Gaps = 39/446 (8%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H+ +   GF       N L++MYA+C  L  AR +F+ + +     +VSW+ ++ A
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILER---TVVSWSAMIGA 60

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           YA  G  +  L+LF RM  D +V+ + ++     +AC  +    +G++   +  A     
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASG--- 117

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            +K  + +  NA++  Y R GS E+A  +F  M       +  +W+++I    +     E
Sbjct: 118 ELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHP----DAFSWTSMITACTENCELLE 173

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           AL++F +M   G+ P  VTL S+L+ CA  GAL +GK+ H       L   G H   ++ 
Sbjct: 174 ALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSR-----LDASGFH-SSVLA 227

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
             AL+DMYAKC S++ +  +F A+  + R+  +WT MI + +Q+G  ++AL LF +M  +
Sbjct: 228 QTALLDMYAKCGSLECSSKVFTAM--ETRNSVSWTAMIAALAQHGQGDEALELFKEMNLE 285

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQ-IHAYVLRNQYEMLIPFVANC-LIDMYSRSG 511
             +   +A T  C L AC+    ++   +  H+ V    Y +       C  +D   R+G
Sbjct: 286 GMVA--DATTFICVLRACSHAGLIKESLEFFHSMV--EDYAIAPTETHYCRALDTIGRAG 341

Query: 512 DIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD---GVTFL 567
            +  A  +  ++      ++W +L+    +H   ++A    + + K  LAP+     T L
Sbjct: 342 RLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSK--LAPEDSMAYTLL 399

Query: 568 VLLYACS---------HSGMVDQGLK 584
             +YA +           GM D+GLK
Sbjct: 400 GNVYAATGRYGDQMRVRKGMTDRGLK 425



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 125/272 (45%), Gaps = 33/272 (12%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSV 157
           +V  W+A+I           A  LF +M   G   P+  TF  V  ACG +     G  +
Sbjct: 50  TVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREI 109

Query: 158 HAVICSSGF--DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
           HA+  +SG    SN  + NAL+ MY RC +L  AR++FD M  P   D  SW +++ A  
Sbjct: 110 HALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHP---DAFSWTSMITACT 166

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------------- 261
           ++ +    L LF RM  +  +    V+L + L+ACA  G    GKQ              
Sbjct: 167 ENCELLEALELFHRMNLE-GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSV 225

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       CG +E + KVF  M+ ++ VSW AM+   ++ G  ++A  LFK+M  E
Sbjct: 226 LAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLE 285

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            +  +  T+  V+   +  G   E+L+ F  M
Sbjct: 286 GMVADATTFICVLRACSHAGLIKESLEFFHSM 317


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/702 (35%), Positives = 379/702 (53%), Gaps = 69/702 (9%)

Query: 143 KACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI- 201
           +A   LPS R   +   V+      S       L+  YA C  L  A  + +     G  
Sbjct: 23  RAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVLESSSPDGRS 82

Query: 202 -CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-----DGVSLVNALSACASLGT 255
               V +N ++ A   S      L+LFA M    + +G     D  +   AL +C++   
Sbjct: 83  RTTTVCFNVLIRALTASSLHRDALVLFASM----RPRGPACFPDHYTYPLALKSCSA--- 135

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
            S+    G+   +     R+  ++V   ++ ++ YSR G  EDA+ +F  M   +V    
Sbjct: 136 -SKDLLLGLQIHSAVAKLRLD-RNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDV---- 189

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQ-MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
           V+W+A+IAG+A+ G    A++VF+Q +   G  P+  T+  +L                 
Sbjct: 190 VSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILP---------------- 233

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
                  ++  + PDD+  +                R +FD +  + +++ +W  M+  Y
Sbjct: 234 -------AMGNAKPDDIRFV----------------RRVFDNM--QFKELISWNAMLAVY 268

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
           + N     A+ LF  M  +   V+P++ TL+  L  C  L+A   G++IH  + R     
Sbjct: 269 ANNEFHVKAVELF--MLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKN--- 323

Query: 495 LIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           + P   + N L+DMY+  G +  AR +FD +  R+V+SWTS+++ YG HG G +A   F+
Sbjct: 324 MCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFE 383

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M  +GL PD + F+ +L ACSH+G++  G  YFDSM+  + I  +AEHY C+VDLLGRA
Sbjct: 384 KMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRA 443

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             ++EA + I  M +EP   +W ALL  CRIH+N+++G +AA+ L  L  E+ G Y LLS
Sbjct: 444 GCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLS 503

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N+YA AGRW DV  +RS+M + G+KK PG S V+  +   TF +GDR HPQS+ IY  L 
Sbjct: 504 NMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLD 563

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L+ +I+ MGY P+    LHDV++E+K D L  HSEKLA+A+ +L T+PGT IR+T NLR
Sbjct: 564 ELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLR 623

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            C DCH A   IS+I   EI+L+D+NR HH  +G C+C  YW
Sbjct: 624 TCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 172/622 (27%), Positives = 276/622 (44%), Gaps = 98/622 (15%)

Query: 43  LLRQCKS---LTQVYLIHQQIIVQNLTHVPPSH---------LIAAYVSHNAPSPALSLL 90
           LL  C++   L  +   H +++V  L H  PSH         LI AY + +A   A ++L
Sbjct: 18  LLAACRAPAHLPSLRAAHARLLV--LLH--PSHPSAAHANVKLIQAYAACSALPLAHTVL 73

Query: 91  QRISP---SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG--WHPDEYTFPFVLKAC 145
           +  SP   S  +   +N LIR      L  +A  LF  M  RG    PD YT+P  LK+C
Sbjct: 74  ESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSC 133

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
                   G  +H+ +     D NV+V ++ ++MY+RC     A ++FD M      D+V
Sbjct: 134 SASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHR---DVV 190

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           SWN ++A +A+ G  +  + +F +    V +QG   S+ +A +    L      K    +
Sbjct: 191 SWNAMIAGFARVGLFDRAIEVFKQF---VVLQG---SMPDAGTMAGILPAMGNAKP-DDI 243

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
              ++VF+ M+ K+++SWNAM+  Y+       A  LF  M ++ V              
Sbjct: 244 RFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEV-------------- 289

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
                                EP+ +TL ++L  C  + A  +GK  H   IKR      
Sbjct: 290 ---------------------EPDSITLATVLPPCGELSAFSVGKRIH-EIIKR-----K 322

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
           +   +L++ NAL+DMYA C  +  AR +FD ++   RDV +WT +I +Y ++G   +A+ 
Sbjct: 323 NMCPNLLLENALMDMYASCGCLKDAREIFDLMSA--RDVISWTSIISAYGKHGHGREAVD 380

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CL 503
           LF +M  Q   ++P++      L AC+    L  G+  H +        +IP   +  C+
Sbjct: 381 LFEKMLGQG--LEPDSIAFVAVLAACSHAGLLADGK--HYFDSMTSRYHIIPKAEHYTCM 436

Query: 504 IDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           +D+  R+G I+ A   +   L + N   W +L+    +H   D    A D +    L P+
Sbjct: 437 VDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLF--SLVPE 494

Query: 563 GVTFLVLL---YACS---------HSGMVDQGLKYFDSMS-KEFGISARAEHYA--CIVD 607
              + VLL   YA +          S MV++G+K F   S  E G      H    C   
Sbjct: 495 QTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQ 554

Query: 608 LLGRANRLDEAVELIEGMPMEP 629
                ++LDE +  I GM   P
Sbjct: 555 SEMIYHKLDELLGKIRGMGYNP 576


>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
 gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
          Length = 809

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/747 (34%), Positives = 399/747 (53%), Gaps = 34/747 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F W +++       L   A   F QM++ G  PD   F   L  CG L     G+ +H
Sbjct: 86  NIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLEDGAGIH 145

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I     DS++ + NAL++MY +C  L  A+QLFD +      +++SW  +V+ +A++G
Sbjct: 146 RQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMK---NVISWTILVSVFAENG 202

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                  L   M  +  ++ D V L+  L+ C+S G          M     V   +  +
Sbjct: 203 RRRETWGLLRSMAVE-GIKPDKVLLLTLLNVCSSRGVLDEDS---WMAHDYIVGSGLDRE 258

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            VV+  A+++ ++R G  + A  +F+K+   + ++ +  W+A+I  YA RG   EAL + 
Sbjct: 259 AVVA-TALLSMFARCGRVDKAREIFEKVADHSAQV-IECWNAMITAYAHRGCSKEALFLL 316

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVINAL 397
             +Q  G++PN +T +S L  C+S   L  G+  H       L +D S  D ++ V NAL
Sbjct: 317 DSLQLQGVKPNCITFISSLGACSS---LQDGRALH-------LLIDESGFDREVSVANAL 366

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           + MY +C S+  +  +F  +A K  D+A+W   I +++ +G +++ + L  QM  +  L 
Sbjct: 367 VTMYGRCGSLLDSAKLFSEMAEK--DLASWNSAIAAHAYHGRSDECIKLLDQMRGEGGL- 423

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           +P++ TL  A+ AC  LA     +++H        E     VAN L+DMY ++GD+DTAR
Sbjct: 424 EPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESE-TCVANGLVDMYGKAGDVDTAR 482

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD   +RNV +W ++   Y   G+     W    M+++G  PD VTF+ LL  C HSG
Sbjct: 483 YIFDRALRRNVTTWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPDSVTFVSLLSVCGHSG 542

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP--TPIIWV 635
           ++++    F +M +EFGI    +HY+C++DLL RA  L +A + I  + +    +  +W+
Sbjct: 543 LLEEARYNFVAMRREFGIDPSPKHYSCVIDLLARAGELQQAEDFIARISVSSPASSPMWM 602

Query: 636 ALLNGCRIHANVELGELAAN------RLLELESEKDGS--YTLLSNIYANAGRWKDVARI 687
           ALL  CR   +       A         +E  S+ D S  +  L+NI A +G W +   I
Sbjct: 603 ALLGACRSLGDSSSRARRAARNAMDVEKMEPRSQHDPSAAHVALANICAASGNWDEALSI 662

Query: 688 RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
           R  M   G++K PG S +  K     F  GDR HP+ ++IY  L  L + +   GYV  T
Sbjct: 663 RKAMAEKGLRKEPGRSLIAVKNRLHEFVAGDRDHPRREEIYAELRRLERAMVDRGYVVDT 722

Query: 748 SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
               H+V + +K DLL  HSEKLA+A+G+L+T PG+ +RI KNLR CGDCH+AI  IS I
Sbjct: 723 GMVTHNVGEADKRDLLGCHSEKLAVAFGVLSTPPGSSLRIIKNLRACGDCHTAIKLISAI 782

Query: 808 INHEIILRDSNRFHHFKEGSCTCKGYW 834
              EI++RDSNRFHHF+ GSC+C  YW
Sbjct: 783 EGREIVVRDSNRFHHFRNGSCSCGDYW 809



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 151/548 (27%), Positives = 257/548 (46%), Gaps = 42/548 (7%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGF-------DSNVFVCNALMAMYARCDTLSYA 189
           ++  +LK CG L     G  +HA I  SG            F+ N L+ MY +C     A
Sbjct: 16  SYARLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEA 75

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           ++ FD +      +I SW +I+ AY  +G     L  F +M     V+ D +  + AL+ 
Sbjct: 76  QRAFDSIAHK---NIFSWTSILVAYFHAGLHAQALERFHQMI-KAGVEPDRLVFLAALNV 131

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           C  L     G         +++ +++   D+   NA+V+ Y + G  + A  LF  +  +
Sbjct: 132 CGILKRLEDGAGI-----HRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMK 186

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
               NV++W+ +++ +A+ G   E   + R M   G++P+ V L++LL+ C+S G L   
Sbjct: 187 ----NVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDED 242

Query: 370 K-ETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV-AT 426
               H Y +       GS  D + +V  AL+ M+A+C  VD AR +F+ +A  +  V   
Sbjct: 243 SWMAHDYIV-------GSGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIEC 295

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  MI +Y+  G + +AL L   +  Q + VKPN  T   +L AC   ++L+ GR +H  
Sbjct: 296 WNAMITAYAHRGCSKEALFLLDSL--QLQGVKPNCITFISSLGAC---SSLQDGRALHLL 350

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           +  + ++  +  VAN L+ MY R G +  +  +F  + ++++ SW S +  +  HG  D+
Sbjct: 351 IDESGFDREVS-VANALVTMYGRCGSLLDSAKLFSEMAEKDLASWNSAIAAHAYHGRSDE 409

Query: 547 AHWAFDQMRKE-GLAPDGVTFLVLLYACSHSGMVD-QGLKYFDSMSKEFGISARAEHYAC 604
                DQMR E GL P  VT +  + AC   G+ D    K     ++E G+ +       
Sbjct: 410 CIKLLDQMRGEGGLEPSSVTLVTAMSAC--GGLADPSSSKRVHERARELGLESETCVANG 467

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +VD+ G+A  +D A  + +   +      W A+    R    V  G L   R ++ +  +
Sbjct: 468 LVDMYGKAGDVDTARYIFD-RALRRNVTTWNAMAGAYR-QCGVTRGVLWLVRTMQRDGYR 525

Query: 665 DGSYTLLS 672
             S T +S
Sbjct: 526 PDSVTFVS 533



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 26/307 (8%)

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI-NALIDMYAK 403
           G++    +   LL  C  +G L  GK  H    +  L +D         + N L+ MY K
Sbjct: 9   GVDDACRSYARLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGK 68

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C   D A+  FD+IA KN  + +WT ++ +Y   G    AL  F QM +    V+P+   
Sbjct: 69  CGRTDEAQRAFDSIAHKN--IFSWTSILVAYFHAGLHAQALERFHQMIKAG--VEPDRLV 124

Query: 464 LSCALMACARLAALRFG----RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
              AL  C  L  L  G    RQI   +L +  E     + N L+ MY + G +D A+ +
Sbjct: 125 FLAALNVCGILKRLEDGAGIHRQIQDKLLDSDLE-----IGNALVSMYGKCGRLDLAKQL 179

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
           FD L+ +NV+SWT L++ +  +G   +       M  EG+ PD V  L LL  CS  G++
Sbjct: 180 FDCLEMKNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVL 239

Query: 580 DQGLKYFDS-MSKEF----GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII- 633
           D+     DS M+ ++    G+   A     ++ +  R  R+D+A E+ E +      +I 
Sbjct: 240 DE-----DSWMAHDYIVGSGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIE 294

Query: 634 -WVALLN 639
            W A++ 
Sbjct: 295 CWNAMIT 301


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 329/579 (56%), Gaps = 49/579 (8%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+ +G    +  LF +    NV L    W+ +I  +A     H AL  + QM    ++PN
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFL----WTHIINAHAHFDLFHHALSYYSQMLTHPIQPN 120

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
             TL SLL  C     L   +  H + IK  LS   SH   L V   L+D YA+   V  
Sbjct: 121 AFTLSSLLKACT----LHPARAVHSHAIKFGLS---SH---LYVSTGLVDAYARGGDVAS 170

Query: 410 ARVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQNGGA 440
           A+ +FDA+  ++                             +DV  W VMI  Y+Q+G  
Sbjct: 171 AQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCP 230

Query: 441 NDALALFPQMFQQDKL-----VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           N+AL  F +M           V+PN  T+   L +C ++ AL  G+ +H+YV  N  ++ 
Sbjct: 231 NEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVN 290

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  V   L+DMY + G ++ AR VFD ++ ++VV+W S++ GYG+HG  D+A   F +M 
Sbjct: 291 VR-VGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMC 349

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G+ P  +TF+ +L AC+H+G+V +G + FDSM   +G+  + EHY C+V+LLGRA R+
Sbjct: 350 CIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRM 409

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
            EA +L+  M +EP P++W  LL  CRIH+NV LGE  A  L+       G+Y LLSN+Y
Sbjct: 410 QEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMY 469

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A A  W  VA++RS+MK +GV+K PGCS ++ K     F  GDR HP+S+ IY +L  + 
Sbjct: 470 AAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMN 529

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
             +K   Y P+T   LHD+ ++EK   L  HSEKLALA+G+++T+PG  I+I KNLR+C 
Sbjct: 530 GWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCL 589

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH+ +  +S I   +II+RD NRFHHF+ GSC+C+ YW
Sbjct: 590 DCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 169/373 (45%), Gaps = 69/373 (18%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSH--LIAAYVSHNAPSPALSLLQRISPSPF 98
           +LL+   KS   +  IH  ++ + L H P  +  L  +Y S      +++L  R +P+P 
Sbjct: 27  ALLIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHR-TPNP- 84

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +VF W  +I       L  +A   + QM+     P+ +T   +LKAC   P+     +VH
Sbjct: 85  NVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPAR----AVH 140

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP------------------- 199
           +     G  S+++V   L+  YAR   ++ A++LFD M +                    
Sbjct: 141 SHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLP 200

Query: 200 ---------GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV------KVQGDGVSLV 244
                    G+ D+V WN ++  YAQ G     L+ F +M   +      KV+ + +++V
Sbjct: 201 EARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVV 260

Query: 245 NALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVK 278
             LS+C  +G    GK                          +CG +E+A+KVF+ M+ K
Sbjct: 261 AVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK 320

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DVV+WN+M+ GY   G  ++A  LF +M    VK + +T+ AV+   A  G   +  +VF
Sbjct: 321 DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVF 380

Query: 339 RQMQ-FCGLEPNV 350
             M+   G+EP V
Sbjct: 381 DSMKDGYGMEPKV 393


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 321/542 (59%), Gaps = 31/542 (5%)

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
            S E A  LF ++ Q N+    V ++ +  GYA+       +  FR+          + L
Sbjct: 75  ASMEHAHQLFDQITQPNI----VLFNTMARGYARLNDPLRMITHFRR---------CLRL 121

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           VS       V AL  GK+ HC+ +K  +S      D++ V+  LI+MY  C  +D +R +
Sbjct: 122 VS------KVKALAEGKQLHCFAVKLGVS------DNMYVVPTLINMYTACGDIDASRRV 169

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD I      V  +  +I S ++N  AN+ALALF ++  Q+  +KP   T+   L +CA 
Sbjct: 170 FDKIDEPC--VVAYNAIIMSLARNNRANEALALFREL--QEIGLKPTDVTMLVVLSSCAL 225

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L +L  GR +H YV +  ++  +  V   LIDMY++ G +D A  VF ++ +R+  +W++
Sbjct: 226 LGSLDLGRWMHEYVKKYGFDRYVK-VNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSA 284

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++  Y  HG G +A    ++M+KE + PD +TFL +LYACSH+G+V++G +YF  M+ E+
Sbjct: 285 IIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEY 344

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    +HY C+VDLLGRA RLDEA + I+ +P++PTPI+W  LL+ C  H NVE+G+  
Sbjct: 345 GIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRV 404

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
             R+ EL+    G Y + SN+ A  G+W DV  +R  M   G  K PGCS ++       
Sbjct: 405 IERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHE 464

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEHSEKLAL 772
           FF G+  H  S  ++  L  LV+ +K+ GYVP TS   + D++DEEK  +L  HSEKLA+
Sbjct: 465 FFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAI 524

Query: 773 AYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKG 832
            +G+L T PGT IR+ KNLR+CGDCH+A  FIS+I   +IILRD  RFHHFK+G C+C  
Sbjct: 525 TFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGD 584

Query: 833 YW 834
           YW
Sbjct: 585 YW 586



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/463 (21%), Positives = 192/463 (41%), Gaps = 102/463 (22%)

Query: 33  TTPCIKITSLL--------LRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPS 84
           T P  + TSLL        + +C +L ++  I    I  N  +   +++I  +++    +
Sbjct: 14  TKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQN--NTNVITKFINFCTSN 71

Query: 85  P-------ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT 137
           P       A  L  +I+    ++  +N + R   RL  P      F + +R         
Sbjct: 72  PTKASMEHAHQLFDQITQP--NIVLFNTMARGYARLNDPLRMITHFRRCLR--------- 120

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
               +KA  E      G  +H      G   N++V   L+ MY  C  +  +R++FD++ 
Sbjct: 121 LVSKVKALAE------GKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKID 174

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
           +P  C +V++N I+ + A++  A   L LF R   ++ ++   V+++  LS+CA LG+  
Sbjct: 175 EP--C-VVAYNAIIMSLARNNRANEALALF-RELQEIGLKPTDVTMLVVLSSCALLGSLD 230

Query: 258 RGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
            G+                          +CG +++A  VF  M  +D  +W+A++  Y+
Sbjct: 231 LGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYA 290

Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM---------- 341
             G    A ++  +M++E V+ + +T+  ++   +  G   E  + F  M          
Sbjct: 291 THGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSI 350

Query: 342 --------------------QFCG---LEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
                               +F     ++P  +   +LLS C++ G + +GK      I+
Sbjct: 351 KHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKR----VIE 406

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVD-VARVMFDAIAPK 420
           R+  +D SH  D ++ + L   Y K   V+ + + M D  A K
Sbjct: 407 RIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVK 449


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/499 (42%), Positives = 310/499 (62%), Gaps = 13/499 (2%)

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           VF +M   G+ P+  T VSLL  CAS  A   G++ H   +K          +   V   
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVK------AGAAEHEYVAPT 178

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI+MYA+C  V  ARVMFD +      V ++  MI +  ++    +AL LF +M  Q K 
Sbjct: 179 LINMYAECGDVRAARVMFDRM--DGECVVSYNAMITASVRSSLPGEALVLFREM--QAKG 234

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP + TL   L ACA L AL  GR IH Y+ + + + L+  V   LIDMY++ G ++ A
Sbjct: 235 LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVK-VNTALIDMYAKCGSLEDA 293

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF +++ R+  +W+ +M  Y  HG G +A   F++M+K+G+ PD VTFL +LYACSHS
Sbjct: 294 IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +GL+YFDSM +E+GI +  +HY C+ DLL R+ +L+ A + I+ +P++PT I+W  
Sbjct: 354 GMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRT 412

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ C  H +V++G+    R+LEL+    G Y + SN+ AN GRW+++  +R LM   GV
Sbjct: 413 LLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGV 472

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVD 755
            K PGCS ++       FF GD +HP SQ+   ++  +++++K +GYVP TS   H ++ 
Sbjct: 473 VKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMG 532

Query: 756 DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
           +EEK   L  HSEKLA+++G+L TAPGT +RI KNLR+C DCHS    +SM+ N  IILR
Sbjct: 533 EEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILR 592

Query: 816 DSNRFHHFKEGSCTCKGYW 834
           D NRFHHF++G C+C  YW
Sbjct: 593 DLNRFHHFEDGVCSCGDYW 611



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 175/374 (46%), Gaps = 27/374 (7%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR----LFLQMMRRGWHPDEYTFPFV 141
           A  +  RI P P  V W+N L+R   R             +F++MM  G  PD YTF  +
Sbjct: 86  ARQVFDRI-PHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSL 144

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LKAC    +   G   H V   +G   + +V   L+ MYA C  +  AR +FD M   G 
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM--DGE 202

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
           C +VS+N ++ A  +S      L+LF  M     ++   V+L++ LSACA LG    G+ 
Sbjct: 203 C-VVSYNAMITASVRSSLPGEALVLFREMQAK-GLKPTSVTLISVLSACALLGALELGRW 260

Query: 262 CGMMEEAKKVFERMKVKDVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                       +M++  +V  N A++  Y++ GS EDA  +F+ M   + +     WS 
Sbjct: 261 I------HDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQ----AWSV 310

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           ++  YA  G+G EA+ +F +M+  G++P+ VT + +L  C+  G +  G + +  +++  
Sbjct: 311 MMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQ-YFDSMREY 369

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             V G     +     + D+ A+   ++ A    D + P       W  ++ + + +G  
Sbjct: 370 GIVSG-----IKHYGCVTDLLARSGQLERAYKFIDEL-PIKPTAILWRTLLSACAGHGDV 423

Query: 441 NDALALFPQMFQQD 454
           +    +F ++ + D
Sbjct: 424 DMGKRVFERILELD 437



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 196/426 (46%), Gaps = 87/426 (20%)

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIV----AAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           L+YARQ+FD +  PG  D++ +NT++          G AE    +F RM  +  V  D  
Sbjct: 83  LAYARQVFDRIPHPG--DVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEE-GVAPDTY 139

Query: 242 SLVNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERM 275
           + V+ L ACAS      G+Q                          CG +  A+ +F+RM
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM 199

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             + VVS+NAM+T   R     +A  LF++M+ +                          
Sbjct: 200 DGECVVSYNAMITASVRSSLPGEALVLFREMQAK-------------------------- 233

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
                    GL+P  VTL+S+LS CA +GAL LG+  H Y  K  L       D L+ +N
Sbjct: 234 ---------GLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL-------DSLVKVN 277

Query: 396 -ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            ALIDMYAKC S++ A  +F  +  ++RD   W+VM+ +Y+ +G   +A+++F +M +Q 
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQG 335

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
             +KP+  T    L AC+    +  G Q   Y    +   ++  + +  C+ D+ +RSG 
Sbjct: 336 --MKPDDVTFLGVLYACSHSGMVSEGLQ---YFDSMREYGIVSGIKHYGCVTDLLARSGQ 390

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           ++ A    D L  +   + W +L++    HG  D     F+++  E     G  +++   
Sbjct: 391 LERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERIL-ELDDSHGGDYVIFSN 449

Query: 572 ACSHSG 577
            C+++G
Sbjct: 450 LCANTG 455



 Score = 47.8 bits (112), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 15/165 (9%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            A  +F +M ++G  PD+ TF  VL AC        G      +   G  S +     + 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-DVKV 236
            + AR   L  A +  DE+  P     + W T+++A A  GD + G  +F R+   D   
Sbjct: 383 DLLARSGQLERAYKFIDEL--PIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSH 440

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
            GD V   N    CA+ G W         EE   V + M  K VV
Sbjct: 441 GGDYVIFSN---LCANTGRW---------EEMNMVRKLMSEKGVV 473


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/661 (35%), Positives = 371/661 (56%), Gaps = 29/661 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +VF W  +I  +    L  + F+ F +M+  G  PD++ +  ++++C  L S   G  VH
Sbjct: 185 NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVH 244

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A I   GF +++FV  +L+ MYA+  ++  +  +F+ M +    + VSWN +++    +G
Sbjct: 245 AQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEH---NQVSWNAMISGCTSNG 301

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                  LF RM        +  +LV+   A   L   + GK      E +     + ++
Sbjct: 302 LHLEAFDLFVRMKNGA-CTPNMYTLVSVSKAVGKLVDVNMGK------EVQNCASELGIE 354

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +V+   A++  YS+ GS  DA ++F      N  +N   W+A+I+GY+Q G   EAL++
Sbjct: 355 GNVLVGTALIDMYSKCGSLHDARSVFDT-NFINCGVNT-PWNAMISGYSQSGCSQEALEL 412

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI--- 394
           + QM   G+  ++ T  S+ +  A+  +L  G+  H   +K  L        DLMV+   
Sbjct: 413 YVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGL--------DLMVVSVN 464

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NA+ D Y+KC  ++  R +FD +  + RD+ +WT ++ +YSQ+    +ALA F  M  ++
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRM--EERDIVSWTTLVTAYSQSSLGEEALATFCLM--RE 520

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           +   PN FT S  L++CA L  L +GRQ+H  + +   +     + + LIDMY++ G I 
Sbjct: 521 EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTE-KCIESALIDMYAKCGSIT 579

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A  VFD +   ++VSWT++++GY  HGL + A   F +M   G+  + VT L +L+ACS
Sbjct: 580 EAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACS 639

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H GMV++GL YF  M   +G+    EHYACI+DLLGR  RLD+A+E I  MPMEP  ++W
Sbjct: 640 HGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVW 699

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             LL GCR+H NVELGE+AA ++L +  E   +Y LLSN Y   G ++D   +R++MK  
Sbjct: 700 QTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQ 759

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           GVKK PG SW+  K     F+ GD+ HPQ ++IY  L  L ++IKAMGYVP   + L++ 
Sbjct: 760 GVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIKAMGYVPDLRYVLNNA 819

Query: 755 D 755
           D
Sbjct: 820 D 820



 Score =  218 bits (556), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 266/538 (49%), Gaps = 26/538 (4%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGF-DSNVFVC-NALMAMYARCDTLSYARQLFDEMFQ 198
           VL+ C E  S R   +VH ++  S F D ++ V  N    +Y++C     A  +FDEM Q
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 183

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               ++ SW  ++    + G    G   F  M  +  +  D  +    + +C  L +   
Sbjct: 184 R---NVFSWTVMIVGSTEHGLFFDGFKFFCEML-NSGILPDKFAYSAIIQSCIGLDSLEL 239

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           GK    M  A+ V         VS  +++  Y+++GS ED++ +F  M +     N V+W
Sbjct: 240 GK----MVHAQIVMRGFATHIFVS-TSLLNMYAKLGSIEDSYWVFNMMTEH----NQVSW 290

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A+I+G    G   EA D+F +M+     PN+ TLVS+      +  + +GKE       
Sbjct: 291 NAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ--NCA 348

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             L ++G    +++V  ALIDMY+KC S+  AR +FD           W  MI  YSQ+G
Sbjct: 349 SELGIEG----NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 404

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            + +AL L+ QM Q    +  + +T      A A   +L+FGR +H  VL+   ++++  
Sbjct: 405 CSQEALELYVQMCQNG--ITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVS 462

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V N + D YS+ G ++  R VFD +++R++VSWT+L+T Y    LG++A   F  MR+EG
Sbjct: 463 VNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEG 522

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
            AP+  TF  +L +C+    ++ G +    + K  G+       + ++D+  +   + EA
Sbjct: 523 FAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKA-GLDTEKCIESALIDMYAKCGSITEA 581

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
            ++ + +   P  + W A+++G   H  VE   L   R +EL   K  + TLL  ++A
Sbjct: 582 GKVFDKIS-NPDIVSWTAIISGYAQHGLVE-DALQLFRRMELSGIKANAVTLLCVLFA 637



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 35/247 (14%)

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV----KPNAFTLSCA---- 467
           + AP+      W V+ GS         A+++  Q  ++ K+V    +P +  +S      
Sbjct: 65  STAPRTVQKIDWVVLTGSL--------AVSVPSQTAKKSKIVVGRNRPESIGISETYQQT 116

Query: 468 --------LMACARLAALRFGRQIHAYVLRNQYE---MLIPFVANCLIDMYSRSGDIDTA 516
                   L  CA   ++R  + +H  VL++ +E   +++ F  N    +YS+  +   A
Sbjct: 117 QVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLF--NHAAHVYSKCSEFRAA 174

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VFD + QRNV SWT ++ G   HGL       F +M   G+ PD   +  ++ +C   
Sbjct: 175 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGL 234

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD--EAVELIEGMPMEPTPIIW 634
             ++ G      +  +  +   A H      LL    +L   E    +  M  E   + W
Sbjct: 235 DSLELG----KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSW 290

Query: 635 VALLNGC 641
            A+++GC
Sbjct: 291 NAMISGC 297


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/704 (34%), Positives = 386/704 (54%), Gaps = 34/704 (4%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           +F   +++C +   S   S +H  I  +G  S+ ++ N L+ M A+  +L  AR +FD +
Sbjct: 46  SFAAAIRSCKD---SNSVSIIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAI 102

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
                 +I SWN I++AYA  G     L LFA+M     V    ++   ALSAC+SLG  
Sbjct: 103 QHK---NIFSWNIIISAYAHRGHPSTALHLFAKM----DVPPTAMTFATALSACSSLGDL 155

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
            RG++     +A +      + D     A+ + Y++ G    A ++F ++  +NV    V
Sbjct: 156 QRGREIHARIKASRGIRPSVILDT----AIFSMYAKCGDLSTAKSVFDRIPAKNV----V 207

Query: 317 TWSAVIAGYAQRGHGH-EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           +W+A+IA YAQ GH H +ALD+F +M   G+ P   T V +L  C  V +L   ++ H  
Sbjct: 208 SWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSL---EKIHAR 264

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            ++  L  D     D+ V NAL++MYAKC S++VAR +F  +  + RD  +  VMI +++
Sbjct: 265 IVETGLQFD---VRDVGVQNALLNMYAKCGSLEVARDIFRKM--QRRDQVSMNVMIATFA 319

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN--QYE 493
           Q G   +++ +F +M  +   +  +  T +  + AC+   AL FG++IH  V+      +
Sbjct: 320 QQGLGKESIQVFREMDLEG--LPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRK 377

Query: 494 MLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
             +P   V   L+ MY + G ++ A+ VF  +  +N VSW +++      G GD+A    
Sbjct: 378 CCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFL 437

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
                EG+  D  +F+ +L ACSHSGM++    +F  M  +F +   AE+Y C+VDLL R
Sbjct: 438 RAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLAR 497

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           + RL +A EL+  MP  P  I W  LL GCR+  ++E    AA +   LE +    YTLL
Sbjct: 498 SGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLL 557

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKR-PGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           S++Y+  G+  ++  +RS MK  G++K  PG S ++       F  GD +HPQ  KI   
Sbjct: 558 SSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRE 617

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
           L  L   +K  G+VP T   +HD+  E+K ++L  HSEKLA+A+G+++T  G P+ + KN
Sbjct: 618 LDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLISTKSGIPLLVLKN 677

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR+C DCH AI  IS + +  I +RD+NRFH F+ G+C+C  YW
Sbjct: 678 LRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCSCGDYW 721



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 165/563 (29%), Positives = 276/563 (49%), Gaps = 42/563 (7%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           +R CK    V +IHQ+I    L  +    + L+     H +   A S+   I     ++F
Sbjct: 51  IRSCKDSNSVSIIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHK--NIF 108

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
            WN +I        P  A  LF +M      P   TF   L AC  L   + G  +HA I
Sbjct: 109 SWNIIISAYAHRGHPSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGREIHARI 165

Query: 162 -CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             S G   +V +  A+ +MYA+C  LS A+ +FD +      ++VSWN ++AAYAQSG +
Sbjct: 166 KASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAK---NVVSWNALIAAYAQSGHS 222

Query: 221 -EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L LF +M  +  V+    + V  L AC  + +    K    + E    F+   V+D
Sbjct: 223 HHQALDLFEKM-AEHGVRPCRATFVGVLGACNDVTSLE--KIHARIVETGLQFD---VRD 276

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKM-RQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           V   NA++  Y++ GS E A  +F+KM R++ V +NV     +IA +AQ+G G E++ VF
Sbjct: 277 VGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNV-----MIATFAQQGLGKESIQVF 331

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R+M   GL  +  T  S+++ C+  GAL  GK  H   ++ VL      P +++V  AL+
Sbjct: 332 REMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLP-NVVVETALV 390

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            MY KC +++ A+ +F A+  KN    +W  M+ + +  G  ++A A       +   V+
Sbjct: 391 SMYGKCGTLEQAKAVFKAMTTKNS--VSWNAMLAACAHQGQGDEAAAFLRAAACEG--VE 446

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
            ++ +    L+AC+    L      H  ++ + ++ L+P   N  C++D+ +RSG +  A
Sbjct: 447 LDSASFISVLIACSHSGMLEVAYD-HFQLMLSDFD-LVPAAENYRCMVDLLARSGRLGDA 504

Query: 517 RVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ---MRKEGLAPDGVTFLVLLYA 572
             + +++    + ++W +L+ G  + G  + A  A +Q   +  +  AP   T L  LY 
Sbjct: 505 DELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAP--YTLLSSLY- 561

Query: 573 CSHSGMVDQGLKYFDSMSKEFGI 595
            S +G  D+ ++   SM KE G+
Sbjct: 562 -SATGKKDELVELRSSM-KERGL 582


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/691 (36%), Positives = 370/691 (53%), Gaps = 81/691 (11%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           ++R  + P+   F  +L +C    S+R    VHA I  + F   +F+ N L+ +Y +CD 
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 186 LSYARQLFDEMFQPGIC----------------------------DIVSWNTIVAAYAQS 217
           L  AR+LFD M Q                                D  SWN++V+ +AQ 
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
              E  L  F +M  +  +  +  S  +ALSACA L   + G Q   +     V +    
Sbjct: 126 DRFEESLEYFVKMHREDFLLNE-YSFGSALSACAGLMDLNMGTQVHAL-----VSKSRYS 179

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            DV   +A++  YS+ GS   A  +F  M    ++ N+VTW+++I  Y Q G   EAL+V
Sbjct: 180 TDVYMGSALIDMYSKCGSVACAEEVFSGM----IERNLVTWNSLITCYEQNGPASEALEV 235

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M   GLEP+ VTL S++S CAS+ AL  G + H   +K          DDL++ NAL
Sbjct: 236 FVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK-----TNKFRDDLVLGNAL 290

Query: 398 IDMYAKCKSVDVARVMFDAIAPKN-----------------------------RDVATWT 428
           +DMYAKC  V+ AR +FD ++ +N                             R+V +W 
Sbjct: 291 VDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWN 350

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +I  Y+QNG   +AL LF  + ++   + P  +T    L ACA LA L  GRQ H +VL
Sbjct: 351 ALIAGYTQNGENEEALRLFRLLKRES--IWPTHYTFGNLLSACANLADLLLGRQAHTHVL 408

Query: 489 RNQYEMLIP-----FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL 543
           +  +E         FV N LIDMY + G I+    VF+ +K+R+ VSW +++ GY  +G 
Sbjct: 409 KQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGY 468

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603
           G +A   F +M   G  PD VT + +L ACSH+G+V++G  YF SM +E G+    +HY 
Sbjct: 469 GAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYT 527

Query: 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663
           C+VDLLGRA  L+EA  LIE MP+ P  ++W +LL  C++H N+E+G+ AA +LLE++  
Sbjct: 528 CMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPW 587

Query: 664 KDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQ 723
             G Y LLSN+YA  GRW DV R+R LM+  GV K+PGCSW++ +     F V D++HP 
Sbjct: 588 NSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPH 647

Query: 724 SQKIYEILAGLVQRIKAMGYVPQTS-FALHD 753
            ++IY +L  L +++K +GY+P  + F  +D
Sbjct: 648 RKQIYSVLKMLTEQMKRVGYIPDANDFEAYD 678



 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 169/578 (29%), Positives = 281/578 (48%), Gaps = 81/578 (14%)

Query: 28  LFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSP 85
           L+   ++P  K+    LR  +S     L+H +I++   +      + LI  Y   +    
Sbjct: 10  LYLPNSSPFAKLLDSCLRS-RSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDD 68

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF---------------------- 123
           A  L  R+     + F WN+LI    +    D A RLF                      
Sbjct: 69  ARKLFDRMPQR--NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHD 126

Query: 124 ---------LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174
                    ++M R  +  +EY+F   L AC  L     G+ VHA++  S + ++V++ +
Sbjct: 127 RFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGS 186

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           AL+ MY++C +++ A ++F  M +    ++V+WN+++  Y Q+G A   L +F RM  D 
Sbjct: 187 ALIDMYSKCGSVACAEEVFSGMIER---NLVTWNSLITCYEQNGPASEALEVFVRMM-DS 242

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQ---------------------------CGMMEE 267
            ++ D V+L + +SACASL     G Q                           C  + E
Sbjct: 243 GLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A++VF+RM +++VVS  +MV+GY+R  S + A  +F KM Q     NVV+W+A+IAGY Q
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQR----NVVSWNALIAGYTQ 358

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G   EAL +FR ++   + P   T  +LLS CA++  LLLG++ H + +K+        
Sbjct: 359 NGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGA 418

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
             D+ V N+LIDMY KC S++    +F+ +  K RD  +W  +I  Y+QNG   +AL +F
Sbjct: 419 ESDIFVGNSLIDMYMKCGSIEDGSRVFEKM--KERDCVSWNAIIVGYAQNGYGAEALQIF 476

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLID 505
            +M    +  KP+  T+   L AC+    +  GR    Y    +   LIP   +  C++D
Sbjct: 477 RKMLVCGE--KPDHVTMIGVLCACSHAGLVEEGRH---YFFSMEEHGLIPLKDHYTCMVD 531

Query: 506 MYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
           +  R+G ++ A+ + + +    + V W SL+    +HG
Sbjct: 532 LLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 36/299 (12%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C  + +   +  ++ ++N+  V  + +++ Y    +   A  +  +++    +V  WNA
Sbjct: 296 KCSKVNEARRVFDRMSIRNV--VSETSMVSGYARAASVKAARFMFSKMTQR--NVVSWNA 351

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           LI    +    + A RLF  + R    P  YTF  +L AC  L     G   H  +   G
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQG 411

Query: 166 F------DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           F      +S++FV N+L+ MY +C ++    ++F++M +    D VSWN I+  YAQ+G 
Sbjct: 412 FEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER---DCVSWNAIIVGYAQNGY 468

Query: 220 AEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
               L +F +M   G+   + D V+++  L AC+           G++EE +  F  M+ 
Sbjct: 469 GAEALQIFRKMLVCGE---KPDHVTMIGVLCACS---------HAGLVEEGRHYFFSMEE 516

Query: 278 KDVVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
             ++     +  MV    R G   +A  L + M    V  + V W +++A  A + HG+
Sbjct: 517 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAM---PVNPDAVVWGSLLA--ACKVHGN 570


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/744 (32%), Positives = 407/744 (54%), Gaps = 43/744 (5%)

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +I   VR   P  A  L+ +M  RG   D++    ++ AC +L +   G  +H  +  +G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           F +++ +  AL+ MYA+C +L  A+++F+ M    I D+ +W++I+AAYA++G  E  ++
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGM---EIKDLFAWSSIIAAYARAGRGEMAVV 117

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           L+ RM  +  V+ + V+   AL  CAS+   + G+       A KV      +D V  ++
Sbjct: 118 LYRRMIAE-GVEPNVVTFACALGGCASVAGLADGRAIHQRILASKV-----PQDDVLQDS 171

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFC 344
           ++  Y +     +A  +F+ M+  NV+    +++A+I+ Y Q G   EAL++F +M +  
Sbjct: 172 LLNMYLKCDEMVEARKVFEGMKARNVR----SYTAMISAYVQAGEHAEALELFSRMSKVE 227

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
            +EPN  T  ++L     +G L  G++ H +   R    +      ++V NAL+ MY KC
Sbjct: 228 AIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTN------VVVQNALVTMYGKC 281

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            S   AR +FD++  +N  V +WT MI +Y+Q+G   +AL LF +M      V+P+  + 
Sbjct: 282 GSPVEARKVFDSMTARN--VISWTSMIAAYAQHGNPQEALNLFKRMD-----VEPSGVSF 334

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
           S AL ACA L AL  GR+IH  V+  +  +  P +   L+ MY+R G +D AR VF+ +K
Sbjct: 335 SSALNACALLGALDEGREIHHRVV--EANLASPQMETSLLSMYARCGSLDDARRVFNRMK 392

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            R+  S  +++  +  HG   +A   + +M +EG+  DG+TF+ +L ACSH+ +V     
Sbjct: 393 TRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRD 452

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
           +  S+  + G+    EHY C+VD+LGR+ RL +A EL+E MP +   + W+ LL+GC+ H
Sbjct: 453 FLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRH 512

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            +++ GE AA ++ EL   +   Y  LSN+YA A R+ D  R+R  M+  GV +    S+
Sbjct: 513 GDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSY 572

Query: 705 VQGKEGTATFFVGDRTHPQS-------QKIYEILAGLVQRIKAMGYVPQTSFALHD---- 753
           ++       F  G R   Q        +++  +L  L++ +K  GYVP T     +    
Sbjct: 573 IEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTREVYLEQQGV 632

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTA---PGTPIRITKNLRICGDCHSAITFISMIINH 810
             +EEK   L  HSE+LA+AYG++         P+R+  + R+C  CHSAI  +S I   
Sbjct: 633 TSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLSDITEK 692

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
            I +RD +RFHHF++G+C+C  +W
Sbjct: 693 RIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 149/574 (25%), Positives = 285/574 (49%), Gaps = 43/574 (7%)

Query: 11  LKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLL--RQCKSLTQVYLIHQQIIVQNL-TH 67
           ++   PL    L+  ++   +     I +TSL+    + ++L +   +H+ +I+    T 
Sbjct: 6   VREGRPLQALELWGEMEERGIVADKFI-VTSLVAACTKLQALEEGRRLHEHLIITGFRTD 64

Query: 68  VP-PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQM 126
           +P  + L+  Y    +   A  + + +      +F W+++I    R    + A  L+ +M
Sbjct: 65  IPLETALLQMYAKCGSLDDAKRVFEGMEIK--DLFAWSSIIAAYARAGRGEMAVVLYRRM 122

Query: 127 MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL 186
           +  G  P+  TF   L  C  +     G ++H  I +S    +  + ++L+ MY +CD +
Sbjct: 123 IAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEM 182

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
             AR++F+ M      ++ S+  +++AY Q+G+    L LF+RM+    ++ +  +    
Sbjct: 183 VEARKVFEGMKAR---NVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           L A   LG   +G++       + +  R    +VV  NA+VT Y + GS  +A  +F  M
Sbjct: 240 LGAVEGLGNLEKGRKV-----HRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSM 294

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
              N    V++W+++IA YAQ G+  EAL++F++M    +EP+ V+  S L+ CA +GAL
Sbjct: 295 TARN----VISWTSMIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGAL 347

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G+E H     RV+  + + P    +  +L+ MYA+C S+D AR +F+ +  K RD  +
Sbjct: 348 DEGREIH----HRVVEANLASPQ---METSLLSMYARCGSLDDARRVFNRM--KTRDAFS 398

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
              MI +++Q+G    AL ++ +M Q+   +  +  T    L+AC+  + +   R     
Sbjct: 399 CNAMIAAFTQHGRKKQALRIYRKMEQEG--IPADGITFVSVLVACSHTSLVADCRDFLQS 456

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGL 543
           ++ +    ++P V +  C++D+  RSG +  A  + + +  Q + V+W +L++G   HG 
Sbjct: 457 LVMDHG--VVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGD 514

Query: 544 GDKAHWAFDQMRKEGLAPDGV---TFLVLLYACS 574
            D+   A  ++ +  LAP       FL  +YA +
Sbjct: 515 LDRGERAARKVFE--LAPAETLPYVFLSNMYAAA 546


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/695 (36%), Positives = 380/695 (54%), Gaps = 91/695 (13%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F+ N L+ +YA+   LS A+ +FD M +    D+ SWNT+++AYA+ G  E   ++F +M
Sbjct: 59  FIHNQLLHLYAKFGKLSDAQNVFDNMTKR---DVYSWNTLLSAYAKMGMVENLHVVFDQM 115

Query: 231 --------------------TGD-----VKVQGDGV-----SLVNALSACASLGTWSRGK 260
                               +G      V++Q DG      S VNAL AC+ L     GK
Sbjct: 116 PYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGK 175

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q         + E   V+     NAM   Y++ G  + A  LF  M    +  NVV+W+ 
Sbjct: 176 QIHGRIVVADLGENTFVR-----NAMTDMYAKCGDIDKARLLFDGM----IDKNVVSWNL 226

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I+GY + G+ +E + +F +MQ  GL+P                                
Sbjct: 227 MISGYVKMGNPNECIHLFNEMQLSGLKP-------------------------------- 254

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                    DL+ ++ +++ Y +C  VD AR +F  + PK +D   WT MI  Y+QNG  
Sbjct: 255 ---------DLVTVSNVLNAYFRCGRVDDARNLFIKL-PK-KDEICWTTMIVGYAQNGRE 303

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            DA  LF  M +++  VKP+++T+S  + +CA+LA+L  G+ +H  V+    +  +  V+
Sbjct: 304 EDAWMLFGDMLRRN--VKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSM-LVS 360

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560
           + L+DMY + G    ARV+F+ +  RNV++W +++ GY  +G   +A   +++M++E   
Sbjct: 361 SALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFK 420

Query: 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620
           PD +TF+ +L AC ++ MV +G KYFDS+S E GI+   +HYAC++ LLGR+  +D+AV+
Sbjct: 421 PDNITFVGVLSACINADMVKEGQKYFDSIS-EHGIAPTLDHYACMITLLGRSGSVDKAVD 479

Query: 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680
           LI+GMP EP   IW  LL+ C    +++  ELAA+ L EL+    G Y +LSN+YA  GR
Sbjct: 480 LIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGR 538

Query: 681 WKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740
           WKDVA +RSLMK    KK    SWV+       F   D  HP+  KIY  L  L+  ++ 
Sbjct: 539 WKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQ 598

Query: 741 MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGT-PIRITKNLRICGDCHS 799
           +GY P T+  LH+V +EEK   +  HSEKLALA+ ++    G  PIRI KN+R+C DCH 
Sbjct: 599 IGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHV 658

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            + F S+ I+  II+RDSNRFHHF  G C+C   W
Sbjct: 659 FMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 201/419 (47%), Gaps = 60/419 (14%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A ++ ++M   G+ P +Y+    L+AC +L   R G  +H  I  +    N FV NA+  
Sbjct: 139 ALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTD 198

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA+C  +  AR LFD M      ++VSWN +++ Y + G+    + LF  M     ++ 
Sbjct: 199 MYAKCGDIDKARLLFDGMIDK---NVVSWNLMISGYVKMGNPNECIHLFNEMQLS-GLKP 254

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D V++ N L+A           +CG +++A+ +F ++  KD + W  M+ GY++ G  ED
Sbjct: 255 DLVTVSNVLNAYF---------RCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREED 305

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A+ LF  M + NVK                                   P+  T+ S++S
Sbjct: 306 AWMLFGDMLRRNVK-----------------------------------PDSYTISSMVS 330

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            CA + +L  G+  H   +  V+ +D S    ++V +AL+DMY KC     ARV+F+ + 
Sbjct: 331 SCAKLASLYHGQVVHGKVV--VMGIDNS----MLVSSALVDMYCKCGVTLDARVIFETMP 384

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            +N  V TW  MI  Y+QNG   +AL L+ +M Q++   KP+  T    L AC     ++
Sbjct: 385 IRN--VITWNAMILGYAQNGQVLEALTLYERMQQEN--FKPDNITFVGVLSACINADMVK 440

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMT 536
            G++    +  +     +   A C+I +  RSG +D A  +   +    N   W++L++
Sbjct: 441 EGQKYFDSISEHGIAPTLDHYA-CMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLS 498



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 41/290 (14%)

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
           H+A+D+         +        L+  CA     +  K    +     + ++   P D 
Sbjct: 8   HQAIDLLYSHGLASFD----DYTRLVLHCARANDFIQAKRLQSH-----MELNLFQPKDS 58

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            + N L+ +YAK   +  A+ +FD +    RDV +W  ++ +Y++ G   +   +F QM 
Sbjct: 59  FIHNQLLHLYAKFGKLSDAQNVFDNMTK--RDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 452 QQDKL-----------------------------VKPNAFTLSCALMACARLAALRFGRQ 482
            +D +                              +P  ++   AL AC++L  LR G+Q
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQ 176

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           IH  ++         FV N + DMY++ GDID AR++FD +  +NVVSW  +++GY   G
Sbjct: 177 IHGRIVVADLGE-NTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMG 235

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
             ++    F++M+  GL PD VT   +L A    G VD     F  + K+
Sbjct: 236 NPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKK 285



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 68/294 (23%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN +I   V++  P+    LF +M   G  PD  T   VL A              
Sbjct: 220 NVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNA-------------- 265

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                                Y RC  +  AR LF ++ +    D + W T++  YAQ+G
Sbjct: 266 ---------------------YFRCGRVDDARNLFIKLPKK---DEICWTTMIVGYAQNG 301

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
             E   MLF  M     V+ D  ++ + +S+CA L +   G+                  
Sbjct: 302 REEDAWMLFGDMLRR-NVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVS 360

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG+  +A+ +FE M +++V++WNAM+ GY++ G   +A  L+++M+QEN K
Sbjct: 361 SALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFK 420

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV---VTLVSLLSGCASV 363
            + +T+  V++         E    F  +   G+ P +     +++LL    SV
Sbjct: 421 PDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSV 474



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           V  S+++ AY        A +L  ++ P    + W   ++  A   R  D A+ LF  M+
Sbjct: 257 VTVSNVLNAYFRCGRVDDARNLFIKL-PKKDEICWTTMIVGYAQNGREED-AWMLFGDML 314

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           RR   PD YT   ++ +C +L S   G  VH  +   G D+++ V +AL+ MY +C    
Sbjct: 315 RRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTL 374

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
            AR +F+ M    I ++++WN ++  YAQ+G     L L+ RM  +   + D ++ V  L
Sbjct: 375 DARVIFETM---PIRNVITWNAMILGYAQNGQVLEALTLYERMQQE-NFKPDNITFVGVL 430

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV----SWNAMVTGYSRIGSFEDAFALF 303
           SAC +           M++E +K F+ +    +      +  M+T   R GS + A  L 
Sbjct: 431 SACIN---------ADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVDLI 481

Query: 304 KKMRQENVKLNVVTWSAVIA 323
           + M  E    N   WS +++
Sbjct: 482 QGMPHEP---NYRIWSTLLS 498



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 41/237 (17%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           ++ CAR       +++ +++  N ++    F+ N L+ +Y++ G +  A+ VFDN+ +R+
Sbjct: 29  VLHCARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRD 88

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           V SW +L++ Y   G+ +  H  FDQM       D V++  L+   + +G   + LK   
Sbjct: 89  VYSWNTLLSAYAKMGMVENLHVVFDQMPYR----DSVSYNTLIACFASNGHSGKALKVLV 144

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            M ++     +  H           N L    +L++             L +G +IH  +
Sbjct: 145 RMQEDGFQPTQYSH----------VNALQACSQLLD-------------LRHGKQIHGRI 181

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            + +L  N  +            ++++YA  G   D+ + R L    G+  +   SW
Sbjct: 182 VVADLGENTFVR---------NAMTDMYAKCG---DIDKARLLFD--GMIDKNVVSW 224


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/657 (34%), Positives = 352/657 (53%), Gaps = 41/657 (6%)

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-DGVSLVNALSACASLGTWSRGK---- 260
           +W +I++  A+ G    G+  FA M  +      +   L   L  CA LG    G+    
Sbjct: 91  AWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHG 150

Query: 261 ----------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
                                 +CG    A++ F  M  KD  SWN ++    + G    
Sbjct: 151 WILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVG 210

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF     E+   +V +W+ +++G  + GH  EAL   +QM   G+  +  T   + +
Sbjct: 211 ATQLF----DESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFA 266

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
               + +  LG++ H   +  VL       +D  V  +L+DMY KC  ++ A  +FD  +
Sbjct: 267 LAGLLSSRDLGRQLHGRVVVAVL------EEDAFVGCSLMDMYCKCGEMESALSIFDRWS 320

Query: 419 PKNRDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
               D    W+ M+  Y QNG   +AL  F +M ++   V    F L+    ACA    +
Sbjct: 321 DFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREG--VPAGQFILTSVASACANAGMV 378

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             GRQ+H +V +  +    P +A+ ++DMYS+SG ++ A  +F + + +NV  WT+++  
Sbjct: 379 EQGRQVHGFVEKLGHRFDAP-LASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCS 437

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           Y  HG G  A   F +M+ E + P+ +T + +L ACSHSG+V  G  YF+ M +E+GI  
Sbjct: 438 YASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVP 497

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             EHY C+VDL GRA  LD+A   IE   +    ++W  LL+ CR+H ++E  +LA+ +L
Sbjct: 498 NTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKL 557

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           ++LE    GSY L+SN+YA   +W D  ++RS MK   V+K+PG SW+  K     F   
Sbjct: 558 VQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVAL 617

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D +HP+S +IY  L  L++R+K MGY  +T   +HD+++E++   L  HSEKLA+A+GI+
Sbjct: 618 DTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGII 677

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +T  GT +RI KNLR+C DCH AI FI+   + EI++RD  RFHHFK+G C+C+ +W
Sbjct: 678 STPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 230/522 (44%), Gaps = 58/522 (11%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           VP S +IA  + HNA         R  P+      W ++I    R     +  R F +M+
Sbjct: 64  VPSSSVIARGL-HNAHRVFDGTPTRSLPA------WTSIISGCAREGRHADGMRAFAEML 116

Query: 128 RR--GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
                  P+ +    VL+ C  L     G  +H  I  SG   +V +CNA++ MYA+C  
Sbjct: 117 DECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGD 176

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVS-L 243
              AR+ F  M Q    D  SWN ++ A  Q GD  G   LF   +  DV      VS L
Sbjct: 177 HGRARRAFGAMAQK---DATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGL 233

Query: 244 VNALSACASLGTWSRGKQCGMM-------------------EEAKKVFERMKV----KDV 280
           +       +LG   +  + G+                    +  +++  R+ V    +D 
Sbjct: 234 MRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDA 293

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
               +++  Y + G  E A ++F +   +  +     WS ++AGY Q G   EAL+ FR+
Sbjct: 294 FVGCSLMDMYCKCGEMESALSIFDRW-SDFTEDRQFAWSTMVAGYVQNGREEEALEFFRR 352

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   G+      L S+ S CA+ G +  G++ H +  K        H  D  + +A++DM
Sbjct: 353 MLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKL------GHRFDAPLASAIVDM 406

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y+K  S++ A  +F +   KN  VA WT M+ SY+ +G    AL +F +M  + + + PN
Sbjct: 407 YSKSGSLEDACRIFRSAQTKN--VALWTTMLCSYASHGQGRMALEIFSRM--KAEKIMPN 462

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDTAR- 517
             TL   L AC+    +  G   H + L  +   ++P     NC++D+Y R+G +D A+ 
Sbjct: 463 EITLVAVLSACSHSGLVSDG--YHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKN 520

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
            + +N      V W +L++   +H      H  + Q+  E L
Sbjct: 521 FIEENKISHEAVVWKTLLSACRLH-----KHIEYAQLASEKL 557


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 329/549 (59%), Gaps = 16/549 (2%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V  Y+   S  +A  LF K+ ++N+ L    W+ +I GYA  G    A+ ++ +M   G
Sbjct: 88  LVHLYAVSNSLLNARNLFDKIPKQNLFL----WNVLIRGYAWNGPHDNAIILYHKMLDYG 143

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P+  TL  +L  C+++ A+  G+  H Y IK           DL V  ALIDMYAKC 
Sbjct: 144 LRPDNFTLPFVLKACSALSAIGEGRSIHEYVIK------SGWERDLFVGAALIDMYAKCG 197

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V  A  +FD I    RD   W  M+ +Y+QNG  +++++L  +M      V+P   TL 
Sbjct: 198 CVMDAGRVFDKIVV--RDAVLWNSMLAAYAQNGHPDESISLCREMAANG--VRPTEATLV 253

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + + A +A L +GR+IH +  R+ ++     V   LIDMY++ G +  A  +F+ L++
Sbjct: 254 TVISSSADVACLPYGREIHGFGWRHGFQSNDK-VKTALIDMYAKCGSVKVALALFERLRE 312

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           + VVSW +++TGY MHGL   A   FD+MRKE   PD +TF+ +L ACS   ++D+G   
Sbjct: 313 KRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRAL 371

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           ++ M +++GI+   +HY C++DLLG   +LDEA +LI  M ++P   +W ALLN C+IH 
Sbjct: 372 YNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHG 431

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           NVEL ELA  +L+ELE +  G+Y +L+N+YA +G+W+ V ++R +M    +KK   CSW+
Sbjct: 432 NVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWI 491

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           + K     F  GD +H  S  IY  L  L   +   GY P T    HDV+++EK  ++  
Sbjct: 492 EVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCS 551

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+A+G+++T+PGT + ITKNLRIC DCH AI FIS I+  EI +RD NR+H FK 
Sbjct: 552 HSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKH 611

Query: 826 GSCTCKGYW 834
           G C+C  +W
Sbjct: 612 GMCSCGDHW 620



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 225/490 (45%), Gaps = 58/490 (11%)

Query: 7   VFPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQ 63
           +FP  +S       H   ++  F    T     TSLL + C   K+L     +H Q    
Sbjct: 18  LFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLL-QSCIDSKALNPGKQLHAQFYHL 76

Query: 64  NLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFR 121
            + +     + L+  Y   N+   A +L  +I     ++F WN LIR        DNA  
Sbjct: 77  GIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQ--NLFLWNVLIRGYAWNGPHDNAII 134

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           L+ +M+  G  PD +T PFVLKAC  L +   G S+H  +  SG++ ++FV  AL+ MYA
Sbjct: 135 LYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYA 194

Query: 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           +C  +  A ++FD++    + D V WN+++AAYAQ+G  +  + L   M  +  V+    
Sbjct: 195 KCGCVMDAGRVFDKIV---VRDAVLWNSMLAAYAQNGHPDESISLCREMAAN-GVRPTEA 250

Query: 242 SLVNALSACASLGT-----------WSRGKQ---------------CGMMEEAKKVFERM 275
           +LV  +S+ A +             W  G Q               CG ++ A  +FER+
Sbjct: 251 TLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERL 310

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           + K VVSWNA++TGY+  G    A  LF KMR+E+ + + +T+  V+A  ++     E  
Sbjct: 311 REKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGR 369

Query: 336 DVFRQM-QFCGLEPNV---VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
            ++  M +  G+ P V     ++ LL  C        G+    Y + R +SV    PD  
Sbjct: 370 ALYNLMVRDYGITPTVQHYTCMIDLLGHC--------GQLDEAYDLIRNMSVK---PDS- 417

Query: 392 MVINALIDMYAKCKSVDVARVMFDA-IAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
            V  AL++      +V++A +  +  I  +  D   + ++   Y+Q+G       L   M
Sbjct: 418 GVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVM 477

Query: 451 FQQDKLVKPN 460
              DK +K N
Sbjct: 478 I--DKRIKKN 485



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPF---VANCLIDMYSRSGDIDTARVVFDNLK 524
           L +C    AL  G+Q+HA      Y + I +   +A  L+ +Y+ S  +  AR +FD + 
Sbjct: 54  LQSCIDSKALNPGKQLHAQF----YHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           ++N+  W  L+ GY  +G  D A   + +M   GL PD  T   +L ACS    + +G
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 329/608 (54%), Gaps = 80/608 (13%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G    + ++F + K  ++  +N M+ G     SF+++  ++  MR+E             
Sbjct: 56  GNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKE------------- 102

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
                                 GL P+  T   LL  CA +    LG + H   +K    
Sbjct: 103 ----------------------GLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK---- 136

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------------- 421
                  D  V  +L+ +Y KC  +D A  +FD I  KN                     
Sbjct: 137 --AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAI 194

Query: 422 ---------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
                          +D+ +W+ MI  Y+ NG   +AL LF +M  +    +P+ + +  
Sbjct: 195 DMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEG--FRPDCYAMVG 252

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR 526
            L ACARL AL  G      + RN++ +  P +   LIDMY++ G +D+A  VF  ++++
Sbjct: 253 VLCACARLGALELGNWASNLMDRNEF-LGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKK 311

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           ++V W + ++G  M G    A   F QM K G+ PDG TF+ LL AC+H+G+VD+G +YF
Sbjct: 312 DIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYF 371

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
           +SM + F ++   EHY C+VDLLGRA  LDEA +L++ MPME   I+W ALL GCR+H +
Sbjct: 372 NSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRD 431

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
            +L E    +L+ LE    G+Y LLSNIY+ + +W+D A+IRS+M   G+KK PG SW++
Sbjct: 432 TQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIE 491

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
                  F VGD +HP S+KIY  L  LV+ +KA GYVP T + L D+++EEK   +  H
Sbjct: 492 VDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCH 551

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEKLA+A+G+++TAP   IR+ KNLR+CGDCH AI  IS     EII+RD+NRFH F +G
Sbjct: 552 SEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDG 611

Query: 827 SCTCKGYW 834
           SC+CK YW
Sbjct: 612 SCSCKDYW 619



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 176/370 (47%), Gaps = 53/370 (14%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F +N +I   V       +  ++  M + G  PD +TFPF+LKAC  L  S+ G  +H
Sbjct: 72  NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH 131

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC---------------- 202
            ++  +G +S+ FV  +L+++Y +C  +  A ++FD++ +  +                 
Sbjct: 132 GLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCR 191

Query: 203 -------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
                              DIVSW++++  YA +G  +  L LF +M  +   + D  ++
Sbjct: 192 EAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNE-GFRPDCYAM 250

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKDVVSWNAMVTGYSRIGSFEDAFAL 302
           V  L ACA LG    G        A  + +R + + + V   A++  Y++ G  + A+ +
Sbjct: 251 VGVLCACARLGALELGNW------ASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEV 304

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F+ MR++++    V W+A I+G A  GH   A  +F QM+  G+EP+  T V LL  C  
Sbjct: 305 FRGMRKKDI----VVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTH 360

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
            G +  G++ +  +++RV ++      ++     ++D+  +   +D A  +  ++ P   
Sbjct: 361 AGLVDEGRQ-YFNSMERVFTL----TPEIEHYGCMVDLLGRAGFLDEAHQLVKSM-PMEA 414

Query: 423 DVATWTVMIG 432
           +   W  ++G
Sbjct: 415 NAIVWGALLG 424



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 190/417 (45%), Gaps = 48/417 (11%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VHA +   G D + ++ N ++         +Y+ ++F +  +P   +I  +NT++     
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEP---NIFLFNTMIHGLVL 85

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG----------------- 259
           +   +  + ++  M  +  +  D  +    L ACA L     G                 
Sbjct: 86  NDSFQESIEIYHSMRKE-GLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAF 144

Query: 260 ---------KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK---MR 307
                     +CG ++ A KVF+ +  K+V +W A+++GY  +G   +A  +F++   + 
Sbjct: 145 VNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVF 204

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
              ++ ++V+WS++I GYA  G   EALD+F +M   G  P+   +V +L  CA +GAL 
Sbjct: 205 DGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALE 264

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
           LG        +        +P   ++  ALIDMYAKC  +D A  +F  +  + +D+  W
Sbjct: 265 LGNWASNLMDRNEFL---GNP---VLGTALIDMYAKCGRMDSAWEVFRGM--RKKDIVVW 316

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487
              I   + +G    A  LF QM  +   ++P+  T    L AC     +  GRQ    +
Sbjct: 317 NAAISGLAMSGHVKAAFGLFGQM--EKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSM 374

Query: 488 LRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            R     L P + +  C++D+  R+G +D A  +  ++  + N + W +L+ G  +H
Sbjct: 375 ER--VFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH 429


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 332/551 (60%), Gaps = 20/551 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y + G   DA  +F KM   NV    V+W+ +I+ Y+      +AL+    M  
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNV----VSWTTMISAYSAAKLNDKALEFLVLMLR 59

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ PN+ T  S+L  C  +  L   ++ HC  IK  + +D     D+ V +ALID+Y++
Sbjct: 60  EGVRPNMFTYSSVLRACDGLFNL---RQLHCCIIK--IGLDS----DVFVRSALIDVYSR 110

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
              ++ A  +FD +     D+  W+ +I  ++QN   ++AL LF +M +   L +    T
Sbjct: 111 WGELENALRVFDEMVTG--DLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQT--T 166

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L+  L AC  LA L  GRQ+H +VL+   ++++    N L+DMY + G ++ A  VF  +
Sbjct: 167 LTSVLRACTGLALLELGRQVHVHVLKYDQDLILN---NALLDMYCKCGSLEDANAVFVRM 223

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            +++V+SW++++ G   +G   +A   F+ M+  G+ P+ VT + +L+ACSH+G+V++GL
Sbjct: 224 VEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGL 283

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YF SM + FGI    EHY C++DLLGRA RL EAV+LI  M  EP  + W ALLN CR+
Sbjct: 284 YYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRV 343

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H NV++   AA ++L L+ +  G+Y LLSNIYAN  RW DVA +R  M + G+KK PGCS
Sbjct: 344 HRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCS 403

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++  +    F +GDR+HPQ ++I   L  L+ ++  +GYVP T+F L D++ E+  D L
Sbjct: 404 WIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSL 463

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+ +G+++   G  IRI KNLRICGDCH     ++ +    I++RD  R+HHF
Sbjct: 464 RYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHF 523

Query: 824 KEGSCTCKGYW 834
           ++G C+C  +W
Sbjct: 524 QDGLCSCGDFW 534



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 200/405 (49%), Gaps = 39/405 (9%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           F+ N L+ MY +   L  A+ +FD+M      ++VSW T+++AY+ +   +  L     M
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDR---NVVSWTTMISAYSAAKLNDKALEFLVLM 57

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
             +  V+ +  +  + L AC  L    R   C +++            DV   +A++  Y
Sbjct: 58  LRE-GVRPNMFTYSSVLRACDGLFNL-RQLHCCIIKIGLD-------SDVFVRSALIDVY 108

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           SR G  E+A  +F +M    V  ++V WS++IAG+AQ   G EAL +F++M+  G     
Sbjct: 109 SRWGELENALRVFDEM----VTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQ 164

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            TL S+L  C  +  L LG++ H + +K        +  DL++ NAL+DMY KC S++ A
Sbjct: 165 TTLTSVLRACTGLALLELGRQVHVHVLK--------YDQDLILNNALLDMYCKCGSLEDA 216

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
             +F  +  K  DV +W+ MI   +QNG + +AL LF  M  +   +KPN  T+   L A
Sbjct: 217 NAVFVRMVEK--DVISWSTMIAGLAQNGYSKEALKLFESM--KVLGIKPNYVTIVGVLFA 272

Query: 471 CARLAALRFGRQIHAYVLRNQYEM--LIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-Q 525
           C+    +  G     Y   +  E+  + P   +  C+ID+  R+G +  A  + + ++ +
Sbjct: 273 CSHAGLVEEG----LYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECE 328

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            + V+W +L+    +H   D A  A  Q+ +  L P      VLL
Sbjct: 329 PDAVTWRALLNACRVHRNVDVAIHAAKQILR--LDPQDAGTYVLL 371



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 34/301 (11%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  YV       A  +  ++     +V  W  +I      +L D A    + M+R G  
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDR--NVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ +T+  VL+AC  L + R    +H  I   G DS+VFV +AL+ +Y+R   L  A ++
Sbjct: 64  PNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           FDEM      D+V W++I+A +AQ+ D +  L LF RM           +L + L AC  
Sbjct: 121 FDEMVTG---DLVVWSSIIAGFAQNSDGDEALRLFKRMK-RAGFLAQQTTLTSVLRACTG 176

Query: 253 LGTWSRGKQ------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
           L     G+Q                        CG +E+A  VF RM  KDV+SW+ M+ 
Sbjct: 177 LALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIA 236

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLE 347
           G ++ G  ++A  LF+ M+   +K N VT   V+   +  G   E L  F  M +  G++
Sbjct: 237 GLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGID 296

Query: 348 P 348
           P
Sbjct: 297 P 297



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 8/190 (4%)

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           +IN LI+MY K   +  A+ +FD +   +R+V +WT MI +YS     + AL     M +
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMP--DRNVVSWTTMISAYSAAKLNDKALEFLVLMLR 59

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           +   V+PN FT S  L AC  L  L   RQ+H  +++   +  + FV + LID+YSR G+
Sbjct: 60  EG--VRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDV-FVRSALIDVYSRWGE 113

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ A  VFD +   ++V W+S++ G+  +  GD+A   F +M++ G      T   +L A
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRA 173

Query: 573 CSHSGMVDQG 582
           C+   +++ G
Sbjct: 174 CTGLALLELG 183



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F+ N LI+MY + G +  A+ VFD +  RNVVSWT++++ Y    L DKA      M +E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ P+  T+  +L AC   G+ +  L+       + G+ +     + ++D+  R   L+ 
Sbjct: 61  GVRPNMFTYSSVLRAC--DGLFN--LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 618 AVELIEGMPMEPTPIIWVALLNG 640
           A+ + + M +    ++W +++ G
Sbjct: 117 ALRVFDEM-VTGDLVVWSSIIAG 138


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/687 (35%), Positives = 372/687 (54%), Gaps = 79/687 (11%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D   F  +L  C    S+R  S VHA I  S F S  F+ N L+ +Y +C  +  AR+LF
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 194 DEMFQPGI----------------------------CDIVSWNTIVAAYAQSGDAEGGLM 225
           D M +  I                             D  SWN++++ + Q G  +  L+
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
            FA+M G   +  +  S  +ALSACA L     G Q   +     V+    + DV   +A
Sbjct: 138 YFAQMHGHGFLVNE-YSFGSALSACAGLQDLKLGSQIHSL-----VYRSNYLSDVYMGSA 191

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           +V  YS+ G  E A ++F +M   +     V+W+++I  Y Q G   EAL +F +M  CG
Sbjct: 192 LVDMYSKCGRVEYAQSVFDEMTVRSR----VSWNSLITCYEQNGPVDEALKIFVEMIKCG 247

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           +EP+ VTL S++S CA++ A+  G++ H     RV+  D    +DL++ NAL+DMYAKC 
Sbjct: 248 VEPDEVTLASVVSACATISAIKEGQQIHA----RVVKCD-EFRNDLILGNALLDMYAKCN 302

Query: 406 SVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQ 436
            ++ AR++FD +  ++                             +DV TW  +I   +Q
Sbjct: 303 RINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQ 362

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN----QY 492
           NG   +AL LF  + ++   V P  +T    L ACA LA L+ GRQ H++VL++    QY
Sbjct: 363 NGENEEALILFRLLKRES--VWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQY 420

Query: 493 -EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
            E    FV N LIDMY + G ++    VF ++ +++ VSW +++ GY  +G G+KA   F
Sbjct: 421 GEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVF 480

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M + G APD VT + +L ACSH+G++D+G  YF SM+ + G+    +HY C+VDLLGR
Sbjct: 481 CKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGR 540

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  L+EA  LIE M M+P  I+W +LL  C++H N++LGE    +LLE++ E  G Y LL
Sbjct: 541 AGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLL 600

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+YA    WK+V R+R LM+  GV K+PGCSW++ +     F V D+ H + ++IY +L
Sbjct: 601 SNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVL 660

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEE 758
             ++Q++K  GYVP       D D+E+
Sbjct: 661 RTILQQMKQAGYVPYVGSNEFDEDEEQ 687



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 234/467 (50%), Gaps = 40/467 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I    +    D A   F QM   G+  +EY+F   L AC  L   + GS +H+++ 
Sbjct: 119 WNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVY 178

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S + S+V++ +AL+ MY++C  + YA+ +FDEM    +   VSWN+++  Y Q+G  + 
Sbjct: 179 RSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEM---TVRSRVSWNSLITCYEQNGPVDE 235

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
            L +F  M     V+ D V+L + +SACA++     G+Q                     
Sbjct: 236 ALKIFVEMI-KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNAL 294

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                 C  + EA+ +F+ M ++ VVS  +MV+GY++    + A  +F  M  +    +V
Sbjct: 295 LDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVK----DV 350

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           +TW+A+IAG  Q G   EAL +FR ++   + P   T  +LL+ CA++  L LG++ H +
Sbjct: 351 ITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSH 410

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            +K           D+ V N+LIDMY KC SV+    +F  +  K  D  +W  MI  Y+
Sbjct: 411 VLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEK--DCVSWNAMIVGYA 468

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG  N AL +F +M +  +   P+  T+   L AC+    L  GR     +      M 
Sbjct: 469 QNGFGNKALEVFCKMLESGE--APDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMP 526

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           +     C++D+  R+G ++ A+ + + +  Q + + W SL+    +H
Sbjct: 527 LKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVH 573



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 35/292 (11%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C  + +  +I   + ++++  V  + +++ Y   +    A  +   +      V  WNA
Sbjct: 300 KCNRINEARIIFDMMPIRSV--VSETSMVSGYAKASKVKVARYMFSNMMVK--DVITWNA 355

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           LI    +    + A  LF  + R    P  YTF  +L AC  L   + G   H+ +   G
Sbjct: 356 LIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHG 415

Query: 166 F------DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           F      DS+VFV N+L+ MY +C ++    ++F  M +    D VSWN ++  YAQ+G 
Sbjct: 416 FRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEK---DCVSWNAMIVGYAQNGF 472

Query: 220 AEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
               L +F +M  +G+     D V+++  L AC+           G+++E +  F  M  
Sbjct: 473 GNKALEVFCKMLESGEAP---DHVTMIGVLCACS---------HAGLLDEGRYYFRSMTA 520

Query: 278 KDVV-----SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +  +      +  MV    R G  E+A  L ++M   +++ + + W +++A 
Sbjct: 521 QHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEM---SMQPDAIVWGSLLAA 569


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 338/589 (57%), Gaps = 29/589 (4%)

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS---FEDAFALFKKMRQENVKLNVV 316
           ++C  ++  K+V   M    ++     ++    I S   F  A ++F  +    + L   
Sbjct: 17  EKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIFL--- 73

Query: 317 TWSAVIAGYAQ-RGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
            ++ +I+  A  + H H A  ++ R +    L+PN  T  SL   C S   L  G+  H 
Sbjct: 74  -YNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHT 132

Query: 375 YTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           + +K +       P  D  V  AL++ YAKC  V   R +F+ I+    D+A+W  ++ +
Sbjct: 133 HVLKFL------EPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKP--DLASWNSILSA 184

Query: 434 YSQNGGAN--------DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           Y  N GA         + L LF +M  Q  L+K N  TL   + ACA L AL  G   H 
Sbjct: 185 YVHNSGAICEDVSLSLEVLTLFIEM--QKSLIKANEVTLVALISACAELGALSQGAWAHV 242

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           YVL++  + L  FV   LIDMYS+ G +D A  +FD L  R+ + + +++ G+ +HG G 
Sbjct: 243 YVLKHNLK-LNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 301

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           +A   F +M  EGLAPD VT +V + +CSH G+V++G   F+SM + +G+  + EHY C+
Sbjct: 302 QALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCL 361

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA RL EA E +  MPM+P  +IW +LL   R+H N+E+GE+    L++LE E  
Sbjct: 362 VDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS 421

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G+Y LLSN+YA+  RW DV R+R LMK  G+ K PG S V+       F +GD+THP+S+
Sbjct: 422 GNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSK 481

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +IY  L  + +R+   G+ P+T   L D+++EEK D L  HSE+LA+A+ ++ +    PI
Sbjct: 482 EIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPI 541

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RI KNLR+CGDCH++   IS I   EII+RD NRFHHFKEG+C+C  YW
Sbjct: 542 RIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 206/437 (47%), Gaps = 37/437 (8%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLT-HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           LL +CK+L  +  +H  +I   L  H  P   I    S    + ALS+   I P+P ++F
Sbjct: 15  LLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHI-PNP-TIF 72

Query: 102 WWNALIRRAVRLRLPDN-AFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHA 159
            +N LI     ++   + AF L+ +++      P+ +TFP + KACG  P  R G ++H 
Sbjct: 73  LYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHT 132

Query: 160 -VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V+       + FV  AL+  YA+C  +   R LF+++ +P   D+ SWN+I++AY  + 
Sbjct: 133 HVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKP---DLASWNSILSAYVHNS 189

Query: 219 DAEGG--------LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
            A           L LF  M   + ++ + V+LV  +SACA LG  S+G           
Sbjct: 190 GAICEDVSLSLEVLTLFIEMQKSL-IKANEVTLVALISACAELGALSQGA----WAHVYV 244

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
           +   +K+   V   A++  YS+ G  + A  LF ++       + + ++A+I G+A  G+
Sbjct: 245 LKHNLKLNHFVG-TALIDMYSKCGCLDLACQLFDQLPHR----DTLCYNAMIGGFAIHGY 299

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
           GH+ALD+F++M   GL P+ VTLV  +  C+ VG +    E  C   + +  V G  P  
Sbjct: 300 GHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLV----EEGCDVFESMKEVYGVEP-K 354

Query: 391 LMVINALIDMYAKCKSVDVA--RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           L     L+D+  +   +  A  RV+   + P   +   W  ++G+   +G       +  
Sbjct: 355 LEHYGCLVDLLGRAGRLREAEERVLNMPMKP---NAVIWRSLLGAARVHGNLEIGEVVLK 411

Query: 449 QMFQQDKLVKPNAFTLS 465
            + Q +     N   LS
Sbjct: 412 HLIQLEPETSGNYVLLS 428


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/736 (34%), Positives = 385/736 (52%), Gaps = 31/736 (4%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAA 76
           L   +K+     +P       +++ C   KS+    ++H+ + +  L       S LI  
Sbjct: 43  LLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKL 102

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           Y  +   S A  L   I P   SV W N ++   V+     NA ++FL+M      P+  
Sbjct: 103 YAENGHLSDAQYLFDNI-PQKDSVLW-NVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSV 160

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TF  VL  C        G+ +H +  S G + +  V N L+AMY++C  L  AR+LFD  
Sbjct: 161 TFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTS 220

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            Q    D+VSWN I++ Y Q+G       LF  M     ++ D ++  + L     L + 
Sbjct: 221 PQS---DLVSWNGIISGYVQNGLMGEAEHLFRGMI-SAGIKPDSITFASFLPCVNELLSL 276

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
              K     E    +     V DV   +A++  Y +    E A    +K+  ++   + V
Sbjct: 277 KHCK-----EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMA----QKILCQSSSFDTV 327

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
             + +I+GY   G   EAL+ FR +    ++P  VT  S+    A + AL LGKE H   
Sbjct: 328 VCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSI 387

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           IK  L       +   V +A++DMYAKC  +D+A  +F+ I  K  D   W  MI S SQ
Sbjct: 388 IKTKLD------EKCHVGSAILDMYAKCGRLDLACRVFNRITEK--DAICWNSMITSCSQ 439

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +A+ LF QM  +    + +  ++S AL ACA L AL +G++IH  +++      +
Sbjct: 440 NGRPGEAINLFRQMGMEG--TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDL 497

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
            +  + LIDMY++ G+++ +R VFD +++RN VSW S+++ YG HG   +    F +M +
Sbjct: 498 -YAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLR 556

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            G+ PD VTFL ++ AC H+G VD+G++Y+  M++E+GI AR EHYAC+ D+ GRA RLD
Sbjct: 557 NGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLD 616

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           EA E I  MP  P   +W  LL  C IH NVEL E+A+  L +L+    G Y LL+N+ A
Sbjct: 617 EAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQA 676

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
            AG+W+ V ++RS+MK  GV+K PG SW++    T  F   D +HP + +IY +L  L+ 
Sbjct: 677 GAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLL 736

Query: 737 RIKAMGYVPQTSFALH 752
            +K  GYVPQ    +H
Sbjct: 737 ELKKEGYVPQLYLPMH 752



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 153/574 (26%), Positives = 266/574 (46%), Gaps = 82/574 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +IR    +   + A   +L+M+  G  PD+YTFP+V+KAC  L S + G  VH  + 
Sbjct: 26  WNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVN 85

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   +VFV ++L+ +YA    LS A+ LFD + Q    D V WN ++  Y ++GD+  
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQK---DSVLWNVMLNGYVKNGDSGN 142

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACAS-----LGTWSRG------------------ 259
            + +F  M    +++ + V+    LS CAS     LGT   G                  
Sbjct: 143 AIKIFLEMRHS-EIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLL 201

Query: 260 ---KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +C  ++ A+K+F+     D+VSWN +++GY + G   +A  LF             
Sbjct: 202 AMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLF------------- 248

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
                                 R M   G++P+ +T  S L     + +L   KE H Y 
Sbjct: 249 ----------------------RGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI 286

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           I+  + +      D+ + +ALID+Y KC+ V++A+ +       + D    T MI  Y  
Sbjct: 287 IRHAVVL------DVFLKSALIDIYFKCRDVEMAQKIL--CQSSSFDTVVCTTMISGYVL 338

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +AL  F  + Q+   +KP + T S    A A LAAL  G+++H  +++ + +   
Sbjct: 339 NGKNKEALEAFRWLVQER--MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKC 396

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             V + ++DMY++ G +D A  VF+ + +++ + W S++T    +G   +A   F QM  
Sbjct: 397 -HVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA--CIVDLLGRANR 614
           EG   D V+    L AC++   +  G +    M K      R++ YA   ++D+  +   
Sbjct: 456 EGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG---PLRSDLYAESSLIDMYAKCGN 512

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           L+ +  + + M  E   + W ++++    H +++
Sbjct: 513 LNFSRRVFDRM-QERNEVSWNSIISAYGNHGDLK 545



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 9/242 (3%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY +  S+  A+ +F  +  +    + W  MI  ++  G  N AL  + +M      V P
Sbjct: 1   MYVRTGSLKDAKNLFYTL--QLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG--VSP 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYV-LRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           + +T    + AC  L +++ G+ +H  V L    E +  FV + LI +Y+ +G +  A+ 
Sbjct: 57  DKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDV--FVGSSLIKLYAENGHLSDAQY 114

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FDN+ Q++ V W  ++ GY  +G    A   F +MR   + P+ VTF  +L  C+   M
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAM 174

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D G +    ++   G+   +     ++ +  +   L  A +L +  P +   + W  ++
Sbjct: 175 LDLGTQ-LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGII 232

Query: 639 NG 640
           +G
Sbjct: 233 SG 234


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 187/367 (50%), Positives = 264/367 (71%), Gaps = 1/367 (0%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L ACA +AAL  G+Q+HA +++  +E+ +  V+N L+DMY + G I+ A+ VF  L + +
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVS-VSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           V SW ++++G   HG G +A   F+QM + G+ P+ +TF+V+L  CSH+G+VD+G  YFD
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           SM+++ GIS +AEHY+C+VDL GRA  LDEA+  I  MP+EP   +W +LL  CR+H N+
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           EL E A  +L+EL  E  G+Y LLSNIYA AGRW D  ++R +MK   VKK PGCSW++ 
Sbjct: 184 ELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEV 243

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
           +     F VGD +HPQ ++IYE L  L  ++KA GY+P T+F LHDV++E+K  +L  HS
Sbjct: 244 QNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHS 303

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLA+A+GI++T PGT IR+ KNLR+CGDCH+A  FIS I++ EI+LRD++RFHHFK+G 
Sbjct: 304 EKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQ 363

Query: 828 CTCKGYW 834
           C+C  YW
Sbjct: 364 CSCGDYW 370



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 13/219 (5%)

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
           +  +L  CASV AL  GK+ H   IK    +D S      V N L+DMY KC  ++ A+ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVS------VSNGLVDMYGKCGRIEDAQE 54

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  +     DVA+W  MI   +Q+G   +A+ LF QM Q    VKPN  T    L  C+
Sbjct: 55  VFSKLLEP--DVASWNAMISGLAQHGCGKEAVLLFEQMLQTG--VKPNQITFVVVLSGCS 110

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSW 531
               +  GR     + R+          +C++D++ R+G +D A    + +  + N   W
Sbjct: 111 HAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVW 170

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            SL+    +HG  + A  A +Q+ +  L P+     VLL
Sbjct: 171 GSLLGACRVHGNIELAERAVEQLIE--LTPENPGTYVLL 207



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 23/223 (10%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+AC  + +   G  VHA I   GF+ +V V N L+ MY +C  +  A+++F ++ +P 
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEP- 62

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             D+ SWN +++  AQ G  +  ++LF +M     V+ + ++ V  LS C+         
Sbjct: 63  --DVASWNAMISGLAQHGCGKEAVLLFEQML-QTGVKPNQITFVVVLSGCS--------- 110

Query: 261 QCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
             G+++E +  F+ M     +S     ++ MV  + R G  ++A     +M    V+ N 
Sbjct: 111 HAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM---PVEPNA 167

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
             W +++   A R HG+  L      Q   L P       LLS
Sbjct: 168 SVWGSLLG--ACRVHGNIELAERAVEQLIELTPENPGTYVLLS 208



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 131/323 (40%), Gaps = 71/323 (21%)

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
           +   L ACAS+    +GKQ    +  K  FE     DV   N +V  Y + G  EDA  +
Sbjct: 1   MAGILRACASVAALEQGKQV-HADIIKIGFEL----DVSVSNGLVDMYGKCGRIEDAQEV 55

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F K+    ++ +V +W+A+I+G AQ G G EA+ +F QM   G++PN +T V +LSGC+ 
Sbjct: 56  FSKL----LEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSH 111

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA------ 416
            G                                          VD  R  FD+      
Sbjct: 112 AGL-----------------------------------------VDEGRNYFDSMTRDHG 130

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           I+PK      ++ M+  + + G  ++AL    QM      V+PNA      L AC     
Sbjct: 131 ISPK---AEHYSCMVDLFGRAGCLDEALNFINQM-----PVEPNASVWGSLLGACRVHGN 182

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV-----VSW 531
           +    +    ++    E   P     L ++Y+ +G  D A  V   +K R+V      SW
Sbjct: 183 IELAERAVEQLIELTPEN--PGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 532 TSLMTGYGMHGLGDKAHWAFDQM 554
             +        +GD +H   +++
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEI 263


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/652 (38%), Positives = 368/652 (56%), Gaps = 28/652 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++   V+    ++A   F +M      P+  +F  +L  C      R G  +H ++ 
Sbjct: 246 WNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVI 305

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGF+S+  V N ++ MY++C  L  AR++FD M Q    D V+WN ++A Y Q+G  + 
Sbjct: 306 RSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQT---DTVTWNGLIAGYVQNGFTDE 362

Query: 223 GLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DV 280
            + LF  M T  VK+  D ++  + L +    G+    K C   +E      R  V  DV
Sbjct: 363 AVALFKAMVTSGVKL--DSITFASFLPSVLKSGSL---KYC---KEVHSYIVRHGVPFDV 414

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
              +A+V  Y + G  E A   F    Q+N  ++V   +A+I+GY   G   EAL++FR 
Sbjct: 415 YLKSALVDIYFKGGDVEMACKTF----QQNTLVDVAVCTAMISGYVLNGLNVEALNLFRW 470

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +   G+ PN +T+ S+L  CA++ +L LGKE HC  +K+ L       +   V +++  M
Sbjct: 471 LIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLE------NVCQVGSSITYM 524

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAK   +D+A   F  +  K  D   W +MI S+SQNG    A+ LF QM       K +
Sbjct: 525 YAKSGRLDLAYQFFRRMPVK--DSVCWNLMIVSFSQNGKPELAIDLFRQMGTSG--TKFD 580

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
           + +LS  L ACA   AL +G+++H +V+RN + +   FVA+ LIDMYS+ G +  AR VF
Sbjct: 581 SVSLSATLSACANYPALYYGKELHCFVVRNSF-ISDTFVASTLIDMYSKCGKLALARSVF 639

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D +  +N VSW S++  YG HG   +    F +M + G+ PD VTFLV++ AC H+G+VD
Sbjct: 640 DMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVD 699

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G+ YF  M++E+GI AR EH+AC+VDL GRA RL EA + I+ MP  P    W +LL  
Sbjct: 700 EGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGA 759

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           CR+H NVEL +LA+  L+EL+    G Y LLSN++A AG W+ V ++RSLMK  GV+K P
Sbjct: 760 CRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIP 819

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
           G SW+    GT  F   D  HPQS +IY IL  L+  ++  GYVPQ    LH
Sbjct: 820 GYSWIDVNGGTHMFSAADGCHPQSVEIYLILKNLLLELRKHGYVPQPYLPLH 871



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 239/482 (49%), Gaps = 34/482 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +   G + ++ + + ++ MY  C +      LF  +    +C  + WN ++  ++ 
Sbjct: 98  IHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRL---QLCYSLPWNWLIRGFSM 154

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE-AKKVFERM 275
            G  +  LM F RM G   V  D  +    + AC  L   +    C M+ E A+ +   M
Sbjct: 155 LGCFDFALMFFFRMLGS-NVAPDKYTFPYVIKACGGL---NNVPLCKMVHELARSMGFHM 210

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
              D+   ++++  Y+  G   DA  LF ++   +     + W+ ++ GY + G  + AL
Sbjct: 211 ---DLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDC----ILWNVMLNGYVKNGDFNSAL 263

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
             F++M+   ++PN V+ V LLS CA+ G +  G + H   I+     D +      V N
Sbjct: 264 GTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPT------VAN 317

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            +I MY+KC ++  AR +FD I P+  D  TW  +I  Y QNG  ++A+ALF  M     
Sbjct: 318 TIITMYSKCGNLFDARKIFD-IMPQT-DTVTWNGLIAGYVQNGFTDEAVALFKAMVTSG- 374

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF---VANCLIDMYSRSGD 512
            VK ++ T +  L +  +  +L++ +++H+Y++R+     +PF   + + L+D+Y + GD
Sbjct: 375 -VKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHG----VPFDVYLKSALVDIYFKGGD 429

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ A   F      +V   T++++GY ++GL  +A   F  + +EG+ P+ +T   +L A
Sbjct: 430 VEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPA 489

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           C+    +  G +    + K+ G+    +  + I  +  ++ RLD A +    MP++ + +
Sbjct: 490 CAALASLKLGKELHCDILKK-GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDS-V 547

Query: 633 IW 634
            W
Sbjct: 548 CW 549



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           W  +I  +S  G  + AL  F +M   +  V P+ +T    + AC  L  +   + +H  
Sbjct: 145 WNWLIRGFSMLGCFDFALMFFFRMLGSN--VAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
                + M + F+ + LI +Y+ +G I  A+ +FD L  R+ + W  ++ GY  +G  + 
Sbjct: 203 ARSMGFHMDL-FIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNS 261

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A   F +MR   + P+ V+F+ LL  C+  G+V  G++    +    G  +       I+
Sbjct: 262 ALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQ-LHGLVIRSGFESDPTVANTII 320

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +  +   L +A ++ + MP   T + W  L+ G
Sbjct: 321 TMYSKCGNLFDARKIFDIMPQTDT-VTWNGLIAG 353


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/724 (33%), Positives = 399/724 (55%), Gaps = 43/724 (5%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M  RG   D++    ++ AC +L +   G  +H  +  +GF +++ +  AL+ MYA+C +
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L  A+++F+ M    I D+ +W++I++AYA++G  E  ++L+ RM  +  V+ + V+   
Sbjct: 61  LDDAKRVFEGM---EIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAE-GVEPNVVTFAC 116

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           AL  CAS+   + G+       A KV      +D V  ++++  Y +     +A  +F+ 
Sbjct: 117 ALGGCASVAGLADGRAIHQRILASKV-----PQDDVLQDSLLNMYLKCDEMVEARKVFEG 171

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVG 364
           M+  NV+    +++A+I+ Y Q G   EAL++F +M +   +EPN  T  ++L     +G
Sbjct: 172 MKARNVR----SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLG 227

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
            L  G++ H +   R    +      ++V NAL+ MY KC S   AR +FD++  +N  V
Sbjct: 228 NLEKGRKVHRHLASRGFDTN------VVVQNALVTMYGKCGSPVEARKVFDSMTARN--V 279

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +WT MI +Y+Q+G   +AL LF +M      V+P+  + S AL ACA L AL  GR+IH
Sbjct: 280 ISWTSMIAAYAQHGNPQEALNLFKRMD-----VEPSGVSFSSALNACALLGALDEGREIH 334

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
             V+  +  +  P +   L+ MY+R G +D AR VF+ +K R+  S  +++  +  HG  
Sbjct: 335 HRVV--EAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRK 392

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            +A   + +M +EG+  DG+TF+ +L ACSH+ +V     +F S+  + G+    EHY C
Sbjct: 393 KQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLC 452

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +VD+LGR+ RL +A EL+E MP +   + W+ LL+GC+ H ++  GE AA ++ EL   +
Sbjct: 453 MVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAE 512

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
              Y  LSN+YA A R+ D  R+R  M+  GV      S+++       F  G R   Q 
Sbjct: 513 TLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQE 572

Query: 725 -------QKIYEILAGLVQRIKAMGYVPQTSFALHD----VDDEEKGDLLFEHSEKLALA 773
                  +++  +L  L++ +K  GYVP T     +      +EEK   L  HSE+LA+A
Sbjct: 573 GHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCFHSERLAIA 632

Query: 774 YGILTTA---PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
           YG++         P+R+  + R+C DCHSAI  +S II   I +RD NRFHHF++G+C+C
Sbjct: 633 YGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSC 692

Query: 831 KGYW 834
             +W
Sbjct: 693 GDHW 696



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 259/511 (50%), Gaps = 37/511 (7%)

Query: 39  ITSLLL--RQCKSLTQVYLIHQQIIVQNL-THVP-PSHLIAAYVSHNAPSPALSLLQRIS 94
           +TSL+    + ++L +   +H+ +I+    T +P  + L+  Y    +   A  + + + 
Sbjct: 13  VTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGME 72

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
                +F W+++I    R    + A  L+ +M+  G  P+  TF   L  C  +     G
Sbjct: 73  IK--DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADG 130

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            ++H  I +S    +  + ++L+ MY +CD +  AR++F+ M      ++ S+  +++AY
Sbjct: 131 RAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKAR---NVRSYTAMISAY 187

Query: 215 AQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274
            Q+G+    L LF+RM+    ++ +  +    L A   LG   +G++       + +  R
Sbjct: 188 VQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKV-----HRHLASR 242

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
               +VV  NA+VT Y + GS  +A  +F  M   N    V++W+++IA YAQ G+  EA
Sbjct: 243 GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARN----VISWTSMIAAYAQHGNPQEA 298

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L++F++M    +EP+ V+  S L+ CA +GAL  G+E H     RV+    + P    + 
Sbjct: 299 LNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIH----HRVVEAHLASP---QME 348

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +L+ MYA+C S+D AR +F+ +  K RD  +   MI +++Q+G    AL ++ +M Q+ 
Sbjct: 349 TSLLSMYARCGSLDDARRVFNRM--KTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEG 406

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
             +  +  T    L+AC+  + +   R     ++ +    ++P V +  C++D+  RSG 
Sbjct: 407 --IPADGITFVSVLVACSHTSLVADCRDFFQSLVMDH--GVVPLVEHYLCMVDVLGRSGR 462

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
           +  A  + + +  Q + V+W +L++G   HG
Sbjct: 463 LGDAEELVETMPYQTDAVAWMTLLSGCKRHG 493


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 395/715 (55%), Gaps = 43/715 (6%)

Query: 43  LLRQC---KSLTQVYLIHQQII---VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           LL+ C   K L Q  LIHQ+I+   +QN   +  S LI  Y S +    A  + Q I  +
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKS-LINLYFSCHLFQSAKLVFQTIE-N 66

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGS 155
           P  +  WN L+    +  +      +F +++   +  PD +T+P VLKAC  L     G 
Sbjct: 67  PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 126

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VH  +  SGF  +V V ++ + MYA+C+    A +LFDEM +    D+ SWN +++ Y 
Sbjct: 127 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPER---DVASWNNVISCYY 183

Query: 216 QSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
           Q G  E  L LF  M    KV G   D V+L   +S+CA L    RGK+  M E  +  F
Sbjct: 184 QDGQPEKALELFEEM----KVSGFKPDSVTLTTVISSCARLLDLERGKEIHM-ELVRSGF 238

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
                 D    +A+V  Y + G  E A  +F++++++NV    V+W+++IAGY+ +G   
Sbjct: 239 ----ALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV----VSWNSMIAGYSLKGDSK 290

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
             +++FR+M   G+ P + TL S+L  C+    L LGK  H Y I+  +  D      + 
Sbjct: 291 SCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD------IF 344

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V ++LID+Y KC ++  A  +F  +   N  V +W VMI  Y + G   +AL +F  M +
Sbjct: 345 VNSSLIDLYFKCGNIGSAENVFQNMPKTN--VVSWNVMISGYVKVGSYLEALVIFTDMRK 402

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
               VKP+A T +  L AC++LA L  G++IH +++ ++ E +   V   L+DMY++ G 
Sbjct: 403 AG--VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLE-INEVVMGALLDMYAKCGA 459

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           +D A  +F+ L +R+ VSWTS++  YG HG   +A   F++M++    PD VTFL +L A
Sbjct: 460 VDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSA 519

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-MEPTP 631
           CSH+G+VD+G  YF+ M  E+G     EHY+C++DLLGR  RL EA E+++  P +    
Sbjct: 520 CSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDV 579

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
            +   L + C +H  ++LGE     L+E + +   +Y +LSN+YA+  +W +V ++R  +
Sbjct: 580 GLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKI 639

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYE---ILAGLVQRIKAMGY 743
           K  G+KK PGCSW++  +    F V D++HPQ+  IYE   ILA  V++ + + +
Sbjct: 640 KELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEKYQVLSF 694


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 300/493 (60%), Gaps = 20/493 (4%)

Query: 348  PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
            P+  T   L+  CA + AL  G+  H    K            + V N+L+ +Y  C   
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAK------NGFVTLVFVQNSLVHLYGACGLF 855

Query: 408  DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
            + A  +FD +  + R++ +W  M+ S++ NG  N+ L +F +M   D    P+ FT+   
Sbjct: 856  ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD--FAPDGFTIVSV 913

Query: 468  LMACARLAALRFGRQIHAYV-----LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            L ACA   AL  GR++H YV     + N +      V+N LID+Y++ G ++ AR +F+ 
Sbjct: 914  LTACAEFGALALGRRVHVYVEKVGLVENSH------VSNALIDLYAKCGSVNDARRIFEE 967

Query: 523  LK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +   R VVSWTSL+ G   +G G +A   F  M +E L P  +T + +LYACSH G+VD 
Sbjct: 968  MGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDD 1027

Query: 582  GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
            G +YFD M +++GIS R EH  C+VDLLGRA R++EA + I  MP+EP  ++W  LL  C
Sbjct: 1028 GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSC 1087

Query: 642  RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
             +H  +ELG++A  RL+EL+    G Y LLSN+YA  G W DV  +R  M    V+K PG
Sbjct: 1088 AMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPG 1147

Query: 702  CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
             S V+ +     F +GDR+HP+S++IYE+LA + +R++  GY+P+TS  L D+++EEK  
Sbjct: 1148 HSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 1207

Query: 762  LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
             L  HSE+LA+A+ +L + PG PIRI KNLR+CGDCH A   IS + + EII+RD +RFH
Sbjct: 1208 ALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFH 1267

Query: 822  HFKEGSCTCKGYW 834
            HF+ G+C+CK YW
Sbjct: 1268 HFQGGACSCKDYW 1280



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 155/296 (52%), Gaps = 16/296 (5%)

Query: 72   HLIAAYVSHNAPS--PALSLLQRISP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
            HL+    +  AP    A+++L R+ P  P   F  N ++R A     P  A  L     R
Sbjct: 741  HLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALELH---RR 797

Query: 129  RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            R   PD +T+P +++AC  L + R G  +HA    +GF + VFV N+L+ +Y  C     
Sbjct: 798  RLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFES 857

Query: 189  ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
            A ++FDEM   G  ++VSWN+++ ++A +G     L +F  M G V    DG ++V+ L+
Sbjct: 858  AHKVFDEMPVRG-RNLVSWNSMLNSFAANGRPNEVLTVFWEMLG-VDFAPDGFTIVSVLT 915

Query: 249  ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
            ACA  G  + G++  +  E   + E   V      NA++  Y++ GS  DA  +F++M  
Sbjct: 916  ACAEFGALALGRRVHVYVEKVGLVENSHVS-----NALIDLYAKCGSVNDARRIFEEM-- 968

Query: 309  ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
              +   VV+W+++I G A  G G EAL++F  M+   L P  +T+V +L  C+  G
Sbjct: 969  -GLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCG 1023



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 170/366 (46%), Gaps = 31/366 (8%)

Query: 182  RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
            R   L YA  +   +   G  D    NT++   A S      L L  R         D  
Sbjct: 750  RAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALELHRRRLA----LPDTH 805

Query: 242  SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
            +    + ACA L     G +C   E AK  F    V  V   N++V  Y   G FE A  
Sbjct: 806  TYPPLIQACARLLALREG-ECLHAEAAKNGF----VTLVFVQNSLVHLYGACGLFESAHK 860

Query: 302  LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
            +F +M       N+V+W++++  +A  G  +E L VF +M      P+  T+VS+L+ CA
Sbjct: 861  VFDEMPVRG--RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACA 918

Query: 362  SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
              GAL LG+  H Y +++V  V+ SH     V NALID+YAKC SV+ AR +F+ +    
Sbjct: 919  EFGALALGRRVHVY-VEKVGLVENSH-----VSNALIDLYAKCGSVNDARRIFEEMG-LG 971

Query: 422  RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL---- 477
            R V +WT +I   + NG   +AL LF  + +++KLV P   T+   L AC+    +    
Sbjct: 972  RTVVSWTSLIVGLAANGFGKEALELF-SLMEREKLV-PTEITMVGVLYACSHCGLVDDGF 1029

Query: 478  -RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLM 535
              F R    Y +  + E L      C++D+  R+G ++ A      +  + N V W +L+
Sbjct: 1030 RYFDRMKEDYGISPRIEHL-----GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLL 1084

Query: 536  TGYGMH 541
                MH
Sbjct: 1085 GSCAMH 1090



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 51/310 (16%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WN+++        P+    +F +M+   + PD +T   VL AC E  +   G  VH  + 
Sbjct: 875  WNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVE 934

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
              G   N  V NAL+ +YA+C +++ AR++F+EM   G+   +VSW +++   A +G  +
Sbjct: 935  KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM---GLGRTVVSWTSLIVGLAANGFGK 991

Query: 222  GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
              L LF+ M  + K+    +++V  L AC+          CG++++  + F+RMK     
Sbjct: 992  EALELFSLMERE-KLVPTEITMVGVLYACS---------HCGLVDDGFRYFDRMK----- 1036

Query: 282  SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
                           ED + +  ++      ++++          + G   EA D    M
Sbjct: 1037 ---------------ED-YGISPRIEHLGCMVDLL---------GRAGRVEEAYDYIITM 1071

Query: 342  QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
                LEPN V   +LL  CA    L LGK       +R++ +D  H  D ++++ L    
Sbjct: 1072 P---LEPNAVVWRTLLGSCAMHKKLELGK----VAWERLVELDPGHSGDYVLLSNLYAAV 1124

Query: 402  AKCKSVDVAR 411
                 V V R
Sbjct: 1125 GMWADVHVLR 1134


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/651 (35%), Positives = 368/651 (56%), Gaps = 24/651 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   V+         LF +M + G    + TF  V ++C  L + R GS +H    
Sbjct: 243 WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHAL 302

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            + F ++V +  A + MY +C+ LS A++LF+ +      ++ S+N I+  YA+S     
Sbjct: 303 KTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNH---NLQSYNAIIVGYARSDKGIE 359

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L +F R+     +  D VSL  A  ACA +     G Q   +       + +   ++  
Sbjct: 360 ALGMF-RLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLS-----MKSLCQSNICV 413

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y + G+  +A  +F++M    V  + V+W+A+IA + Q G+  + L +F  M 
Sbjct: 414 ANAILDMYGKCGALVEACLVFEEM----VSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 469

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+EP+  T  S+L  CA   AL  G E H   IK  L +D        V  ALIDMY+
Sbjct: 470 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDS------FVGIALIDMYS 523

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  ++ A  + D +A +   V +W  +I  +S    + +A   F +M +    V P+ F
Sbjct: 524 KCGMMEKAEKLHDRLAEQT--VVSWNAIISGFSLQKQSEEAQKTFSKMLEMG--VDPDNF 579

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T +  L  CA L  +  G+QIHA +++ + +    ++++ L+DMYS+ G++   +++F+ 
Sbjct: 580 TYATILDTCANLVTVELGKQIHAQIIKKELQS-DAYISSTLVDMYSKCGNMQDFQLIFEK 638

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
              R+ V+W +++ GY  HGLG++A   F+ M+ E + P+  TFL +L AC H G+V++G
Sbjct: 639 APNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKG 698

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L YF SM   +G+  + EHY+C+VD++GR+ ++ +A+ELIEGMP E   +IW  LL+ C+
Sbjct: 699 LHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICK 758

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH NVE+ E AA  +L+LE E   +Y LLSNIYANAG W +V ++R +M+  G+KK PGC
Sbjct: 759 IHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGC 818

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
           SW++ K     F VGD+ HP+S++IYE L  L   +K +GY+P T F L+D
Sbjct: 819 SWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILND 869



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 172/582 (29%), Positives = 279/582 (47%), Gaps = 37/582 (6%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+LI   +          +FLQM R G   D  TF  VLK+C  L     G  +H 
Sbjct: 139 VVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHG 198

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +    GFD +V   +AL+ MYA+C  L  + Q F  M +    + VSW+ I+A   Q+ D
Sbjct: 199 LAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK---NWVSWSAIIAGCVQNDD 255

Query: 220 AEGGLMLFARMTGDVKVQGDGVS---LVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
             GGL LF  M    +  G GVS     +   +CA L     G Q           +   
Sbjct: 256 LRGGLELFKEM----QKAGVGVSQSTFASVFRSCAGLSALRLGSQL-----HGHALKTDF 306

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DVV   A +  Y +  +  DA  LF  +   N++    +++A+I GYA+   G EAL 
Sbjct: 307 GTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ----SYNAIIVGYARSDKGIEALG 362

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +FR +Q  GL  + V+L      CA +   L G + H  ++K +         ++ V NA
Sbjct: 363 MFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQ------SNICVANA 416

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           ++DMY KC ++  A ++F+ +   +RD  +W  +I ++ QNG     L+LF  M Q    
Sbjct: 417 ILDMYGKCGALVEACLVFEEMV--SRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG-- 472

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           ++P+ FT    L ACA   AL  G +IH  +++++   L  FV   LIDMYS+ G ++ A
Sbjct: 473 MEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLG-LDSFVGIALIDMYSKCGMMEKA 531

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             + D L ++ VVSW ++++G+ +    ++A   F +M + G+ PD  T+  +L  C++ 
Sbjct: 532 EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL 591

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             V+ G +    + K+  + + A   + +VD+  +   + +   + E  P     + W A
Sbjct: 592 VTVELGKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF-VTWNA 649

Query: 637 LLNGCRIHANVELGELAAN--RLLELESEKDGSYTLLSNIYA 676
           ++ G   H    LGE A      ++LE+ K    T L+ + A
Sbjct: 650 MVCGYAQHG---LGEEALKIFEYMQLENVKPNHATFLAVLRA 688



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 142/571 (24%), Positives = 274/571 (47%), Gaps = 54/571 (9%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TF  + + C +  +   G   HA +  + F   VFV N L+ MY +C  L +A ++FD M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 197 FQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLFA 228
            Q                                D+VSWN++++ Y  +GD    + +F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
           +M G +    D  +    L +C+SL     G Q   +   K  F+     DVV+ +A++ 
Sbjct: 164 QM-GRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLA-VKMGFDC----DVVTGSALLD 217

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y++    + +   F  M ++N     V+WSA+IAG  Q       L++F++MQ  G+  
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNW----VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           +  T  S+   CA + AL LG + H + +K           D+++  A +DMY KC ++ 
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGT------DVVIGTATLDMYMKCNNLS 327

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A+ +F+++   N ++ ++  +I  Y+++    +AL +F ++ Q+  L   +  +LS A 
Sbjct: 328 DAQKLFNSLP--NHNLQSYNAIIVGYARSDKGIEALGMF-RLLQKSGL-GLDEVSLSGAF 383

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            ACA +     G Q+H   +++  +  I  VAN ++DMY + G +  A +VF+ +  R+ 
Sbjct: 384 RACAVIKGDLEGLQVHGLSMKSLCQSNIC-VANAILDMYGKCGALVEACLVFEEMVSRDA 442

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           VSW +++  +  +G  +K    F  M + G+ PD  T+  +L AC+    ++ G++  + 
Sbjct: 443 VSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNR 502

Query: 589 MSK-EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
           + K   G+ +       ++D+  +   +++A +L + +  E T + W A+++G  +    
Sbjct: 503 IIKSRLGLDSFVG--IALIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQS 559

Query: 648 ELGELAANRLLELESEKDG-SYTLLSNIYAN 677
           E  +   +++LE+  + D  +Y  + +  AN
Sbjct: 560 EEAQKTFSKMLEMGVDPDNFTYATILDTCAN 590



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 6/187 (3%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y        A  L  R++    +V  WNA+I      +  + A + F +M+  G  
Sbjct: 518 LIDMYSKCGMMEKAEKLHDRLAEQ--TVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVD 575

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD +T+  +L  C  L +   G  +HA I      S+ ++ + L+ MY++C  +   + +
Sbjct: 576 PDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLI 635

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F++       D V+WN +V  YAQ G  E  L +F  M  +  V+ +  + +  L AC  
Sbjct: 636 FEKAPNR---DFVTWNAMVCGYAQHGLGEEALKIFEYMQLE-NVKPNHATFLAVLRACGH 691

Query: 253 LGTWSRG 259
           +G   +G
Sbjct: 692 MGLVEKG 698


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/703 (34%), Positives = 373/703 (53%), Gaps = 60/703 (8%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS-GDAEGGLMLFARMTG 232
           N L+ +Y +   L +A +LFDE+      +  +W  +++ +A++ G +E    LF  M  
Sbjct: 71  NYLLTLYVKSSNLDHAHKLFDEITHK---NTQTWTILISGFARAAGSSELVFSLFREMQA 127

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMME 266
           D     +  +L + L  C+       GK                          +C   E
Sbjct: 128 DGACP-NQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFE 186

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
            A+  FE M  KDVVSWN M+  Y R G  E +  +F+    ++V    V+W+ +I G  
Sbjct: 187 YAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDV----VSWNTIIDGLI 242

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           Q G+   AL+    M   G E + VT    L   +S+  + +G++ H   +   L+ DG 
Sbjct: 243 QCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDG- 301

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAI---------------APKNRDVATWTVMI 431
                 + ++L++MY KC  +D A  +   +                PK R V +W+ M+
Sbjct: 302 -----YIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMV-SWSSMV 355

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
             Y  NG   D +  F  M  +  L+  +  T++  + ACA    L FG+QIHAY+ +  
Sbjct: 356 SGYVWNGKYEDGMKTFRSMVCE--LIVVDIRTVATIISACANAGILEFGKQIHAYIQKIG 413

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
              +  +V + LIDMYS+SG +D A ++F+ +K+ NVV WTS+++G  +HG G +A   F
Sbjct: 414 LR-IDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLF 472

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           + M   G+ P+ VTF+ +L ACSH G++++G +YF  M   + I+   EHY  +V+L GR
Sbjct: 473 EGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGR 532

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A  L EA   I    +     +W + L+ CR+H N  +G+  +  LL+       +Y LL
Sbjct: 533 AGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILL 592

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SN+ ++  +W + A +RSLM   GVKK+PG SWVQ K+   +F VGDR+HPQ ++IY  L
Sbjct: 593 SNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYL 652

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             L+ R+K +GY       + DV++E+   L+  HSEKLAL + I+ T+P TPIRI KNL
Sbjct: 653 DSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNL 712

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RIC DCH+   + S ++  EII+RD++RFHHFK+ SC+C  YW
Sbjct: 713 RICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 242/555 (43%), Gaps = 63/555 (11%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDN-AFRLFLQMMRR 129
           ++L+  YV  +    A  L   I+        W  LI    R        F LF +M   
Sbjct: 71  NYLLTLYVKSSNLDHAHKLFDEITHKNTQT--WTILISGFARAAGSSELVFSLFREMQAD 128

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  P++YT   VLK C    + + G  +HA I  +G   +V + N+++ +Y +C    YA
Sbjct: 129 GACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYA 188

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
              F+ M +    D+VSWN ++ AY + GD E  L +F        V  +  ++++ L  
Sbjct: 189 ESFFELMIEK---DVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWN--TIIDGLIQ 243

Query: 250 CA-------------------SLGTWSRG----KQCGMMEEAKKVFERMKV----KDVVS 282
           C                    S  T+S          ++E  +++  R+       D   
Sbjct: 244 CGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYI 303

Query: 283 WNAMVTGYSRIGSFEDAFALFKK-----MRQENV-------KLNVVTWSAVIAGYAQRGH 330
            +++V  Y + G  + A  + K      +R+ N        K  +V+WS++++GY   G 
Sbjct: 304 RSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGK 363

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
             + +  FR M    +  ++ T+ +++S CA+ G L  GK+ H Y  K  L +D      
Sbjct: 364 YEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDA----- 418

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
             V ++LIDMY+K  S+D A ++F+ I   N  V  WT MI   + +G   +A++LF  M
Sbjct: 419 -YVGSSLIDMYSKSGSLDDALMIFEQIKEPN--VVLWTSMISGCALHGQGKEAISLFEGM 475

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYS 508
                 + PN  T    L AC+ +  +  G + +  ++++ Y  + P V +   ++++Y 
Sbjct: 476 LNLG--IIPNEVTFVGVLNACSHVGLIEEGCR-YFRMMKDTYH-INPEVEHYTSMVNLYG 531

Query: 509 RSGD-IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
           R+G  I+    +F+N        W S ++   +H   +    +  +M  +    D   ++
Sbjct: 532 RAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGK-SVSEMLLQSAPSDPDAYI 590

Query: 568 VLLYACSHSGMVDQG 582
           +L   CS +   D+ 
Sbjct: 591 LLSNMCSSNHQWDEA 605



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 4/169 (2%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG- 539
           R +H +  + +  + I   AN L+ +Y +S ++D A  +FD +  +N  +WT L++G+  
Sbjct: 52  RALHGHYFK-KGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFAR 110

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
             G  +     F +M+ +G  P+  T   +L  CS    +  G K   +     G+    
Sbjct: 111 AAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFG-KGIHAWILRNGVGGDV 169

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
                I+DL  +    + A    E M +E   + W  ++       +VE
Sbjct: 170 VLENSILDLYLKCKEFEYAESFFELM-IEKDVVSWNIMIGAYLREGDVE 217


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 337/575 (58%), Gaps = 49/575 (8%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CGMM +A+++F+ M  +++VSWN +++G   +G F +AF LF  M +E       T++ 
Sbjct: 22  KCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAV 81

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I   A    G E + + RQ+  C L+  +                              
Sbjct: 82  MIRASA----GLELISIGRQLHACTLKMGI------------------------------ 107

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                   DD+ V  ALIDMY+KC S++ AR +F+ +  K      W  +I  Y+ +G +
Sbjct: 108 -------GDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKT--TVGWNTIIAGYALHGYS 158

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL ++ +M  +D  VK + FT S  +  CARLA++   +Q HA ++R+ +   I  VA
Sbjct: 159 EEALDMYYEM--RDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDI--VA 214

Query: 501 N-CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           N  L+D YS+ G I+ AR VFD +  +NV+SW +L+ GYG HG G +A   F+QM +E +
Sbjct: 215 NTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERM 274

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ +TFL +L ACSHSG+ ++G + F SM ++  I  RA HYAC+++L+GR   LDEA+
Sbjct: 275 NPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEAL 334

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LI G P +PT  +W ALL  CR++ N ELG+ AA +L  +E +K  +Y +L NIY +AG
Sbjct: 335 ALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAG 394

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
             K+ A +   +K  G++ RP CSW++ K     F  GD  HPQ ++IY+ +  L+  I 
Sbjct: 395 NLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEIS 454

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GYVP     L DVD++E+   L+ HSEKLA+A+G+++T    P++I +  RICGDCH 
Sbjct: 455 KYGYVPNQKTLLPDVDEQEERVRLY-HSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHE 513

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           AI  I+ +   EI++RD+ RFHHFK G C+C+ YW
Sbjct: 514 AIKLIARVTGREIVIRDAGRFHHFKHGHCSCEDYW 548



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 198/460 (43%), Gaps = 79/460 (17%)

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           +  +GF+ + ++ N ++ M+ +C  +  AR+LFDEM +    ++VSWNTI++     GD 
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPER---NLVSWNTIISGLVDVGDF 57

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------- 261
                LF  M  +    G   +    + A A L   S G+Q                   
Sbjct: 58  MEAFRLFLNMWEEFSDAG-SFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCA 116

Query: 262 -------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN 314
                  CG +E+A+ VFE M  K  V WN ++ GY+  G  E+A  ++ +MR   VK++
Sbjct: 117 LIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMD 176

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC 374
             T+S ++                                     CA + ++   K+ H 
Sbjct: 177 HFTFSMIV-----------------------------------RICARLASVEHAKQAHA 201

Query: 375 YTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
             I+           D++   AL+D Y+K   ++ AR +FD +A KN  V +W  +IG Y
Sbjct: 202 ALIRHGFG------SDIVANTALVDFYSKWGRIEDARHVFDKMASKN--VISWNALIGGY 253

Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494
             +G  ++A+ LF QM Q+   + PN  T    L AC+       G +I   + R+    
Sbjct: 254 GNHGRGSEAVELFEQMIQER--MNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIK 311

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHWAFDQ 553
                  C+I++  R G +D A  +      +   + W +L+T   ++   +   +A ++
Sbjct: 312 PRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEK 371

Query: 554 MRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +   G+ PD +  ++VLL   + +G + +      ++ ++
Sbjct: 372 LY--GMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRK 409



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 125/265 (47%), Gaps = 30/265 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I   V +     AFRLFL M         +TF  +++A   L     G  +HA   
Sbjct: 44  WNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTL 103

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   ++FV  AL+ MY++C ++  AR +F+EM +      V WNTI+A YA  G +E 
Sbjct: 104 KMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEK---TTVGWNTIIAGYALHGYSEE 160

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-------------------- 262
            L ++  M  D  V+ D  +    +  CA L +    KQ                     
Sbjct: 161 ALDMYYEMR-DSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALV 219

Query: 263 ------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                 G +E+A+ VF++M  K+V+SWNA++ GY   G   +A  LF++M QE +  N +
Sbjct: 220 DFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHI 279

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQM 341
           T+ AV++  +  G      ++F+ M
Sbjct: 280 TFLAVLSACSHSGLSERGWEIFQSM 304



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 7/263 (2%)

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +D     D  + N ++ M+ KC  +  AR +FD +  +N  + +W  +I      G   +
Sbjct: 2   IDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERN--LVSWNTIISGLVDVGDFME 59

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A  LF  M+++       +FT +  + A A L  +  GRQ+HA  L+      I FV+  
Sbjct: 60  AFRLFLNMWEE--FSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDI-FVSCA 116

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LIDMYS+ G I+ AR VF+ + ++  V W +++ GY +HG  ++A   + +MR  G+  D
Sbjct: 117 LIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMD 176

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
             TF +++  C+    V+   +   ++ +  G  +       +VD   +  R+++A  + 
Sbjct: 177 HFTFSMIVRICARLASVEHAKQAHAALIRH-GFGSDIVANTALVDFYSKWGRIEDARHVF 235

Query: 623 EGMPMEPTPIIWVALLNGCRIHA 645
           + M  +   I W AL+ G   H 
Sbjct: 236 DKMASKNV-ISWNALIGGYGNHG 257



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           ++ N ++ M+ + G +  AR +FD + +RN+VSW ++++G    G   +A   F  M +E
Sbjct: 11  YMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEE 70

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
                  TF V++ A +   ++  G +   + + + GI         ++D+  +   +++
Sbjct: 71  FSDAGSFTFAVMIRASAGLELISIG-RQLHACTLKMGIGDDIFVSCALIDMYSKCGSIED 129

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           A  + E MP E T + W  ++ G  +H   E
Sbjct: 130 ARFVFEEMP-EKTTVGWNTIIAGYALHGYSE 159


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/522 (40%), Positives = 320/522 (61%), Gaps = 12/522 (2%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           +++ ++ +  GYA+    + A  +F ++   GL P+  T  SLL  CAS  AL  G   H
Sbjct: 94  DIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLH 153

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           C+ +K  L+       ++ +   LI+MYA+C  ++ AR +FD +  +   + ++  +I  
Sbjct: 154 CFAVKLGLN------HNIYICPTLINMYAECNDMNAARGVFDEM--EQPCIVSYNAIITG 205

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+++   N+AL+LF ++  Q   ++P   T+   +M+CA L AL  G+ IH YV +  ++
Sbjct: 206 YARSSQPNEALSLFREL--QASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFD 263

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  V   LIDM+++ G +  A  +F+ ++ R+  +W++++  +  HG G KA   F++
Sbjct: 264 KYVK-VNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEE 322

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M++EG+ PD +TFL LLYACSH+G+V+QG  YF SMSK +GI+   +HY C+VDLLGRA 
Sbjct: 323 MKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAG 382

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            LDEA   ++ + ++ TPI+W  LL+ C  H NVE+ +    R+ EL+    G Y +LSN
Sbjct: 383 HLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSN 442

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA  GRW+DV  +R LMK  GV K PGCS V+       FF GD  H  S ++   L  
Sbjct: 443 LYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDE 502

Query: 734 LVQRIKAMGYVPQTSFALH-DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
           L++ IK +GYVP TS   H D+++E K  +L  HSEKLA+A+G+L T PGT IR+ KNLR
Sbjct: 503 LMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLR 562

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH+A   IS I   +I++RD  RFH F++G C+C  +W
Sbjct: 563 ICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 198/419 (47%), Gaps = 30/419 (7%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALS-------LLQRISP 95
           LL +C SL ++  I    I  NL       ++   ++    +P  S       L  +I  
Sbjct: 35  LLSKCTSLNELKQIQAYTIKTNLQ--SDISVLTKLINFCTLNPTTSYMDHAHHLFDQILD 92

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
               +F  N + R   R   P  AF LF +++  G  PD+YTF  +LKAC    + R G 
Sbjct: 93  KDIILF--NIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGM 150

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +H      G + N+++C  L+ MYA C+ ++ AR +FDEM QP  C IVS+N I+  YA
Sbjct: 151 GLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQP--C-IVSYNAIITGYA 207

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
           +S      L LF  +     ++   V++++ + +CA LG    GK      + K   + +
Sbjct: 208 RSSQPNEALSLFRELQAS-NIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYV 266

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           KV       A++  +++ GS  DA ++F+ MR  + +     WSA+I  +A  G G +A+
Sbjct: 267 KVN-----TALIDMFAKCGSLTDAISIFEGMRVRDTQ----AWSAMIVAFATHGDGLKAI 317

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            +F +M+  G+ P+ +T + LL  C+  G +  G+  + Y++ +   +       +    
Sbjct: 318 SMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGR-GYFYSMSKTYGITPG----IKHYG 372

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            ++D+  +   +D A    D +  K   +  W  ++ + S +G    A  +  ++F+ D
Sbjct: 373 CMVDLLGRAGHLDEAYNFVDKLEIKATPI-LWRTLLSACSTHGNVEMAKRVIERIFELD 430



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 43/238 (18%)

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE----MLIPFVANCLIDM 506
           F +++ V      LS  L  C  L  L+   QI AY ++   +    +L   +  C ++ 
Sbjct: 20  FSKNEFVINQLHPLS-LLSKCTSLNELK---QIQAYTIKTNLQSDISVLTKLINFCTLN- 74

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
              +  +D A  +FD +  ++++ +  +  GY        A   F ++   GL PD  TF
Sbjct: 75  -PTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTF 133

Query: 567 LVLLYACSHSGMVDQGLKYF-------------------------DSMSKEFGISARAEH 601
             LL AC+ S  + +G+                            + M+   G+    E 
Sbjct: 134 SSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQ 193

Query: 602 -----YACIVDLLGRANRLDEAVEL---IEGMPMEPTPIIWVALLNGCRIHANVELGE 651
                Y  I+    R+++ +EA+ L   ++   +EPT +  ++++  C +   ++LG+
Sbjct: 194 PCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGK 251


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 331/556 (59%), Gaps = 15/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV +  ++++ YS  G   DA  +F+++ + +V    VTW+A+ +GY   G   EA+D+F
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSV----VTWTALFSGYTTAGKHREAIDLF 200

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++M   G+ P+   +V +LS C  VG L  G+    + +K +  ++     +  V   L+
Sbjct: 201 KKMVEMGVRPDSYFIVQVLSACVHVGDLDSGE----WIVKHMEEME--MQKNSFVRTTLV 254

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           ++YAKC  ++ AR +FD++  K  D+ TW+ MI  Y+ N    + +  F QM Q++  +K
Sbjct: 255 NLYAKCGKMEKARSVFDSMGEK--DIVTWSTMIQGYASNSFPKEGIEFFLQMLQEN--LK 310

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F++   L +CA L AL  G    + + R+++ +   F+AN LIDMY++ G +     
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMARGFE 369

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF  +K++++V   + ++G   +G    +   F Q  K G++PDG TFL LL  C H+G+
Sbjct: 370 VFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGL 429

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +  GL++F+++S  + +    EHY C+VDL GRA  LD+A  LI  MPM P  I+W ALL
Sbjct: 430 IQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALL 489

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           +GCR+  + +L E     L+ LE    G+Y  LSNIY+ +GRW + A +R +M   G+KK
Sbjct: 490 SGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKK 549

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG SW++ +     F   D++HP S KIY  L  L   ++ MG+VP T F   DV+DEE
Sbjct: 550 IPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEE 609

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSEKLA+A+G+++T  G  IR+ KNLR+CGDCH  +  IS I   EI++RD+N
Sbjct: 610 KERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNN 669

Query: 819 RFHHFKEGSCTCKGYW 834
           RFH F  GSC+C  YW
Sbjct: 670 RFHCFTNGSCSCNDYW 685



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 213/474 (44%), Gaps = 92/474 (19%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F +N LI   V   L      LFL + + G +   +TFP VLKAC    + + G  +H
Sbjct: 75  NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLH 134

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++   GF+ +V    +L+++Y+    L+ A ++F+E+ +     +V+W  + + Y  +G
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERS---VVTWTALFSGYTTAG 191

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
                + LF +M  ++ V+ D   +V  LSAC  +G    G+                  
Sbjct: 192 KHREAIDLFKKMV-EMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVR 250

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG ME+A+ VF+ M  KD+V+W+ M+ GY+     ++    F +M QEN+K
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLK 310

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                              P+  ++V  LS CAS+GAL LG+  
Sbjct: 311 -----------------------------------PDQFSIVGFLSSCASLGALDLGEWG 335

Query: 373 HCYTIKRVLSVDGSHP--DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
                   +S+   H    +L + NALIDMYAKC ++     +F  +  K +D+      
Sbjct: 336 --------ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM--KEKDIVIMNAA 385

Query: 431 IGSYSQNGGANDALALFPQMFQQDKL-VKPNAFTLSCALMACARLA----ALRFGRQIH- 484
           I   ++NG    + A+F    Q +KL + P+  T    L  C         LRF   I  
Sbjct: 386 ISGLAKNGHVKLSFAVFG---QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTG 537
            Y L+   E        C++D++ R+G +D A R++ D   + N + W +L++G
Sbjct: 443 VYALKRTVEHY-----GCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG 491



 Score = 42.7 bits (99), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 50/253 (19%), Positives = 102/253 (40%), Gaps = 42/253 (16%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +Q+H  ++ +       F+ N L+           + ++F + +  N+  + +L+ G+  
Sbjct: 30  KQVHVSLIHHHLHH-DTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVN 88

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           + L  +    F  +RK GL   G TF ++L AC+ +     G+    S+  + G +    
Sbjct: 89  NHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGID-LHSLVVKCGFNHDVA 147

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-------------------- 640
               ++ +   + RL++A ++ E +P E + + W AL +G                    
Sbjct: 148 AMTSLLSIYSGSGRLNDAHKVFEEIP-ERSVVTWTALFSGYTTAGKHREAIDLFKKMVEM 206

Query: 641 ---------------CRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAGRWKDV 684
                          C    +++ GE     + E+E +K+    T L N+YA  G+   +
Sbjct: 207 GVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGK---M 263

Query: 685 ARIRSLMKHTGVK 697
            + RS+    G K
Sbjct: 264 EKARSVFDSMGEK 276


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 361/658 (54%), Gaps = 26/658 (3%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY++ D    AR +      P   ++VSW ++++  AQ+G     L+ F  M  +  V  
Sbjct: 1   MYSKLDHPESARLVL--RLTPAR-NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPN 57

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           D  +   A  A ASL     GKQ   +       +  ++ DV    +    Y +    +D
Sbjct: 58  D-FTFPCAFKAVASLRLPVTGKQIHAL-----AVKCGRILDVFVGCSAFDMYCKTRLRDD 111

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A  LF ++ + N++    TW+A I+     G   EA++ F + +     PN +T  + L+
Sbjct: 112 ARKLFDEIPERNLE----TWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLN 167

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C+    L LG + H   ++     D S      V N LID Y KCK +  + ++F  + 
Sbjct: 168 ACSDWLHLNLGMQLHGLVLRSGFDTDVS------VCNGLIDFYGKCKQIRSSEIIFTEMG 221

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            KN    +W  ++ +Y QN     A  L+  +  +  +V+ + F +S  L ACA +A L 
Sbjct: 222 TKN--AVSWCSLVAAYVQNHEDEKASVLY--LRSRKDIVETSDFMISSVLSACAGMAGLE 277

Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            GR IHA+ ++   E  I FV + L+DMY + G I+ +   FD + ++N+V+  SL+ GY
Sbjct: 278 LGRSIHAHAVKACVERTI-FVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 336

Query: 539 GMHGLGDKAHWAFDQM--RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
              G  D A   F++M  R  G  P+ +TF+ LL ACS +G V+ G+K FDSM   +GI 
Sbjct: 337 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIE 396

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
             AEHY+CIVD+LGRA  ++ A E I+ MP++PT  +W AL N CR+H   +LG LAA  
Sbjct: 397 PGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAEN 456

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           L +L+ +  G++ LLSN +A AGRW +   +R  +K  G+KK  G SW+  K     F  
Sbjct: 457 LFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQA 516

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGI 776
            DR+H  +++I   LA L   ++A GY P    +L+D+++EEK   +  HSEKLALA+G+
Sbjct: 517 KDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGL 576

Query: 777 LTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           L+     PIRITKNLRICGDCHS   F+S  +  EII+RD+NRFH FK+G C+CK YW
Sbjct: 577 LSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 169/375 (45%), Gaps = 21/375 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA I  +V    P  A   F++  R   HP+  TF   L AC +      G  +H ++ 
Sbjct: 127 WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVL 186

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGFD++V VCN L+  Y +C  +  +  +F EM   G  + VSW ++VAAY Q+ + E 
Sbjct: 187 RSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEM---GTKNAVSWCSLVAAYVQNHEDEK 243

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             +L+ R   D+ V+     + + LSACA +     G+        K   ER     +  
Sbjct: 244 ASVLYLRSRKDI-VETSDFMISSVLSACAGMAGLELGRSI-HAHAVKACVERT----IFV 297

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM- 341
            +A+V  Y + G  ED+   F +M ++    N+VT +++I GYA +G    AL +F +M 
Sbjct: 298 GSALVDMYGKCGCIEDSEQAFDEMPEK----NLVTRNSLIGGYAHQGQVDMALALFEEMA 353

Query: 342 -QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
            + CG  PN +T VSLLS C+  GA+    E        + S  G  P      + ++DM
Sbjct: 354 PRGCGPTPNYMTFVSLLSACSRAGAV----ENGMKIFDSMRSTYGIEPGAEHY-SCIVDM 408

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
             +   V+ A      + P    ++ W  +  +   +G     L     +F+ D     N
Sbjct: 409 LGRAGMVERAYEFIKKM-PIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGN 467

Query: 461 AFTLSCALMACARLA 475
              LS    A  R A
Sbjct: 468 HVLLSNTFAAAGRWA 482



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 211/472 (44%), Gaps = 34/472 (7%)

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           Y   + P  A  L+ R++P+  +V  W +LI    +      A   F +M R G  P+++
Sbjct: 2   YSKLDHPESA-RLVLRLTPAR-NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDF 59

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TFP   KA   L     G  +HA+    G   +VFV  +   MY +      AR+LFDE+
Sbjct: 60  TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119

Query: 197 FQPGICDIVSWNTIVAAYAQSG---DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
            +    ++ +WN  ++     G   +A    + F R+ G      + ++    L+AC+  
Sbjct: 120 PER---NLETWNAFISNSVTDGRPREAIEAFIEFRRIDG----HPNSITFCAFLNACSDW 172

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
              + G Q   +     V       DV   N ++  Y +      +  +F +M  +    
Sbjct: 173 LHLNLGMQLHGL-----VLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK---- 223

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N V+W +++A Y Q     +A  ++ + +   +E +   + S+LS CA +  L LG+  H
Sbjct: 224 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIH 283

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            + +K  +         + V +AL+DMY KC  ++ +   FD +  KN  + T   +IG 
Sbjct: 284 AHAVKACVE------RTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN--LVTRNSLIGG 335

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+  G  + ALALF +M  +     PN  T    L AC+R  A+  G +I    +R+ Y 
Sbjct: 336 YAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDS-MRSTYG 394

Query: 494 MLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHG 542
            + P   +  C++DM  R+G ++ A      +  +  +S W +L     MHG
Sbjct: 395 -IEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 445


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/548 (39%), Positives = 337/548 (61%), Gaps = 19/548 (3%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ-FCGLEP 348
           Y++ G F D   +F +M  +++    V W+A+I  Y Q     EAL +F++MQ   GL  
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDL----VCWTAMITAYEQAEKPEEALILFKKMQQEEGLLA 57

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           + + +VS+ S    +G +      H Y  ++ L       ++L V N+++ M+ KC + +
Sbjct: 58  DSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSL------IEELCVGNSILAMHTKCGNTE 111

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            AR++FD +    RDV +W  M+  Y+QNG A +AL LF +M  +D   +P   T    +
Sbjct: 112 KARLVFDMMM--ERDVISWNSMLSGYTQNGQATEALLLFDEM--RDSDCQPTPVTALIMV 167

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL--KQR 526
            ACA L     GR+ H +++ ++ E+    ++N L+DMY++ GD++ A  +F+ +   +R
Sbjct: 168 SACAYLGFRHLGRKFHDFIVDSRMEIDTN-LSNALMDMYAKCGDLEKAVDLFNGIPPTER 226

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           N  SW  L++GYGMHG G +A   F +M++EG+ P+  TF  +L ACSH+G++D+G K F
Sbjct: 227 NAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCF 286

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
             M K   ++   +H+AC+VD+LGRA  L EA +LI+ MP  P+  +W ALL  C+IH N
Sbjct: 287 AEM-KRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGN 345

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           +ELG+ AA+ LL+LE    G Y L+SNIYA + +WK+V ++R  MK+ G+KK    S ++
Sbjct: 346 MELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIE 405

Query: 707 GKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEH 766
             +    F   D+ +P   ++Y+ +  L   +K  GYVP  S ALHDV++E+K  +L  H
Sbjct: 406 YGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYH 465

Query: 767 SEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
           SEKLA+A+G+L   PG  IR+TKNLR+C DCHSA  +IS I   +II+RD+NRFHHF+ G
Sbjct: 466 SEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGG 525

Query: 827 SCTCKGYW 834
           +C+CK YW
Sbjct: 526 TCSCKDYW 533



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 195/430 (45%), Gaps = 85/430 (19%)

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYA+C      R++FDEM      D+V W  ++ AY Q+   E  L+LF +M  +  +  
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTK---DLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLA 57

Query: 239 DGVSLVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVF 272
           D +++V+  SA   LG                                +CG  E+A+ VF
Sbjct: 58  DSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVF 117

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           + M  +DV+SWN+M++GY++ G   +A  LF +MR  +                      
Sbjct: 118 DMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDC--------------------- 156

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
                         +P  VT + ++S CA +G   LG++ H + +   + +D +      
Sbjct: 157 --------------QPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTN------ 196

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           + NAL+DMYAKC  ++ A  +F+ I P  R+  +W V+I  Y  +G   +AL LF +M  
Sbjct: 197 LSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRM-- 254

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           Q++ V+PN FT +  L AC+    +  GR+  A + R    +     A C++DM  R+G 
Sbjct: 255 QEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHA-CVVDMLGRAGL 313

Query: 513 IDTARVVFDNLKQRNVVS----WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           +  A   FD +K+         W +L+    +HG  +    A   + +  L P+   + V
Sbjct: 314 LQEA---FDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQ--LEPNHTGYYV 368

Query: 569 LL---YACSH 575
           L+   YA S+
Sbjct: 369 LMSNIYAASN 378



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 14/282 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W A+I    +   P+ A  LF +M +  G   D      V  A G+L   +   +VH   
Sbjct: 26  WTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYA 85

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
                   + V N+++AM+ +C     AR +FD M +    D++SWN++++ Y Q+G A 
Sbjct: 86  FRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMER---DVISWNSMLSGYTQNGQAT 142

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L+LF  M  D   Q   V+ +  +SACA LG    G++         V  RM++   +
Sbjct: 143 EALLLFDEMR-DSDCQPTPVTALIMVSACAYLGFRHLGRKFHDF----IVDSRMEIDTNL 197

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           S NA++  Y++ G  E A  LF  +     + N  +W+ +I+GY   GHG EAL++F +M
Sbjct: 198 S-NALMDMYAKCGDLEKAVDLFNGIPP--TERNAGSWNVLISGYGMHGHGKEALELFSRM 254

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           Q  G+EPN  T  S+LS C+  G +  G++  C+   + LSV
Sbjct: 255 QEEGVEPNHFTFTSILSACSHAGLIDEGRK--CFAEMKRLSV 294



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 133/253 (52%), Gaps = 16/253 (6%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYAKC      R +FD ++ K  D+  WT MI +Y Q     +AL LF +M Q++ L+  
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTK--DLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLAD 58

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQY-EMLIPFVANCLIDMYSRSGDIDTARV 518
           +   +S A  A  +L  ++    +H Y  R    E L   V N ++ M+++ G+ + AR+
Sbjct: 59  SIAVVSVA-SAVGQLGDVKNAHTVHGYAFRKSLIEELC--VGNSILAMHTKCGNTEKARL 115

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VFD + +R+V+SW S+++GY  +G   +A   FD+MR     P  VT L+++ AC++ G 
Sbjct: 116 VFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGF 175

Query: 579 VDQGLKYFDSMSKEFGISARAE----HYACIVDLLGRANRLDEAVELIEGM-PMEPTPII 633
              G K+ D     F + +R E        ++D+  +   L++AV+L  G+ P E     
Sbjct: 176 RHLGRKFHD-----FIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGS 230

Query: 634 WVALLNGCRIHAN 646
           W  L++G  +H +
Sbjct: 231 WNVLISGYGMHGH 243



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 110/263 (41%), Gaps = 20/263 (7%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN+++    +      A  LF +M      P   T   ++ AC  L     G   H 
Sbjct: 125 VISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHD 184

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            I  S  + +  + NALM MYA+C  L  A  LF+ +  P   +  SWN +++ Y   G 
Sbjct: 185 FIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGI-PPTERNAGSWNVLISGYGMHGH 243

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L LF+RM  +  V+ +  +  + LSAC+           G+++E +K F  MK   
Sbjct: 244 GKEALELFSRMQEE-GVEPNHFTFTSILSACS---------HAGLIDEGRKCFAEMKRLS 293

Query: 280 VVSWNA----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           V   +     +V    R G  ++AF L K+M           W A++   A + HG+  L
Sbjct: 294 VTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSD---GVWGALL--LACKIHGNMEL 348

Query: 336 DVFRQMQFCGLEPNVVTLVSLLS 358
                     LEPN      L+S
Sbjct: 349 GKTAASNLLQLEPNHTGYYVLMS 371


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 376/713 (52%), Gaps = 126/713 (17%)

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           ++ QM   G  PD + +P ++K+ G       G   HA +   G  S+ FV NA++ MYA
Sbjct: 17  MYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLGHGSDAFVRNAVIDMYA 71

Query: 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241
           R                     +  WN +V+ Y +  ++EG                   
Sbjct: 72  R--------------------KVADWNAMVSGYWK-WESEG------------------- 91

Query: 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
                                    +A+ +F+ M  ++V++W AMVTGY+++   E A  
Sbjct: 92  -------------------------QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARR 126

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
            F  M + +V    V+W+A+++GYAQ G   EAL +F +M   G   N VT         
Sbjct: 127 YFDCMPERSV----VSWNAMLSGYAQNGLAEEALRLFDEM--LGAYRNSVTW-------- 172

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
                                            NA+I  Y +   +D AR +F+ +  +N
Sbjct: 173 ---------------------------------NAMISAYMRVGDLDSARKLFNTMPGRN 199

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
             V TW  MI  Y+QNG +  A+ LF +M    KL  P+  T+   + AC  L AL  G 
Sbjct: 200 --VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT-PDEVTMVSVISACGHLGALELGN 256

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
            +  ++  NQ ++ I    N +I MYSR G ++ A+ VF  +  R+VVS+ +L++G+  H
Sbjct: 257 WVVRFLTENQIKLSISG-HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAH 315

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
           G G +A      M++ G+ PD VTF+ +L ACSH+G++++G K F+S+ K+  I    +H
Sbjct: 316 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI-KDPAI----DH 370

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YAC+VDLLGR   L++A   +E MPMEP   ++ +LLN  RIH  VELGELAAN+L ELE
Sbjct: 371 YACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELE 430

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            +  G++ LLSNIYA+AGRWKDV RIR  MK  GVKK  G SWV+       F V DR+H
Sbjct: 431 PDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSH 490

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
            +S  IY++L  L ++++  GY+   S  L DV++EEK +++  HSEKLA+ Y +L +  
Sbjct: 491 ERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEA 550

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G  IR+ KNLR+C DCH+AI  IS +    II+RD+NRFH F +G C+CK YW
Sbjct: 551 GAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR-RGW 131
           +I+AY+       A  L   +     +V  WN++I    +      A  LF +M+  +  
Sbjct: 175 MISAYMRVGDLDSARKLFNTMPGR--NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 232

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            PDE T   V+ ACG L +   G+ V   +  +    ++   NA++ MY+RC ++  A++
Sbjct: 233 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 292

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +F EM      D+VS+NT+++ +A  G     + L + M  +  ++ D V+ +  L+AC+
Sbjct: 293 VFQEM---ATRDVVSYNTLISGFAAHGHGVEAINLMSTMK-EGGIEPDRVTFIGVLTACS 348

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                      G++EE +KVFE +K   +  +  MV    R+G  EDA    ++M  E
Sbjct: 349 ---------HAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPME 397



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 30/225 (13%)

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           M+  YS        + ++ QM  Q   V+P+AF     L+  A    + F    HA+VL+
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQM--QGCGVRPDAFVYPI-LIKSAGTGGIGF----HAHVLK 53

Query: 490 NQYEMLIPFVANCLIDMYSRS-GDIDT-------------ARVVFDNLKQRNVVSWTSLM 535
             +     FV N +IDMY+R   D +              A+ +FD + +RNV++WT+++
Sbjct: 54  LGHGS-DAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMV 112

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
           TGY      + A   FD M +  +    V++  +L   + +G+ ++ L+ FD M    G 
Sbjct: 113 TGYAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAEEALRLFDEM---LGA 165

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
              +  +  ++    R   LD A +L   MP     + W +++ G
Sbjct: 166 YRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNV-VTWNSMIAG 209


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 325/572 (56%), Gaps = 15/572 (2%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A+++FER+  ++V+SWN +  GY + G    A  LF +M + NV     TW+A++
Sbjct: 152 GDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNV----ATWNAMV 207

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           AG    G   E+L  F  M+  G+ P+   L S+   CA +  ++ G++ H Y ++  L 
Sbjct: 208 AGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLD 267

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  D+ V ++L  MY +C  +     +   +   +  + +   +I   +QNG +  
Sbjct: 268 ------RDMCVGSSLAHMYMRCGCLQEGEAVLRML--PSLSIVSCNTIIAGRTQNGDSEG 319

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           AL  F  M  +   V  +  T   A+ +C+ LAAL  G+QIH  V++   + ++P V  C
Sbjct: 320 ALEYFCMM--RSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVP-VMTC 376

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ MYSR G +  +  VF      +    +++++ YG HG G KA   F QM   G  P 
Sbjct: 377 LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS 436

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            VTFL LLYACSHSG+ ++G+  F+ M+K +G+    +HY C+VDLLGR+  LDEA  LI
Sbjct: 437 DVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI 496

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MP+ P  +IW  LL+ C+   N ++ E  A R++EL+     SY LLSNI A + RW 
Sbjct: 497 LSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWG 556

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DV+ +R  M+   V+K PG SWV+ K     F  GD +HP+ ++I E L  ++ +I+  G
Sbjct: 557 DVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCG 616

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y P  S  LHD++DEEK   L  HSEKLA+A+  L+   G PIR+ KNLR+C DCH AI 
Sbjct: 617 YSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIK 676

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +S +   EI++RD +RFHHFK+G C+C+ YW
Sbjct: 677 LMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 183/428 (42%), Gaps = 52/428 (12%)

Query: 38  KITSLLLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISP 95
           ++ S L R C++L  +  +H               +HL+ AY      + A  L +RI P
Sbjct: 107 RLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERI-P 165

Query: 96  SPFSVFW------------------------------WNALIRRAVRLRLPDNAFRLFLQ 125
               + W                              WNA++     L   + +   FL 
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 225

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M R G HPDE+    V + C  L     G  VHA +  SG D ++ V ++L  MY RC  
Sbjct: 226 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 285

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L     +   +  P +  IVS NTI+A   Q+GD+EG L  F  M   V V  D V+ V+
Sbjct: 286 LQEGEAVLRML--PSL-SIVSCNTIIAGRTQNGDSEGALEYFCMMR-SVGVAADVVTFVS 341

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A+S+C+ L   ++G+Q        +V +    K V     +V  YSR G   D+  +F  
Sbjct: 342 AISSCSDLAALAQGQQI-----HGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFG 396

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
               +  L     SA+I+ Y   GHG +A+++F+QM   G EP+ VT ++LL  C+  G 
Sbjct: 397 YCGSDTFL----LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGL 452

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
              G +  C+ +  +    G  P  +     ++D+  +   +D A  +  ++ P   D  
Sbjct: 453 KEEGMD--CFEL--MTKTYGMQP-SVKHYTCVVDLLGRSGCLDEAEALILSM-PLTPDGV 506

Query: 426 TWTVMIGS 433
            W  ++ +
Sbjct: 507 IWKTLLSA 514



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 205/492 (41%), Gaps = 68/492 (13%)

Query: 82  APSPALSLLQRISPSPFS---VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTF 138
           AP  ALSL   +     S   V   +  +R     RL D   R F  ++   W      F
Sbjct: 53  APVRALSLRSMVGLVALSLDTVATKDEFVRLCATGRLRDALRRPFRGVL---WSDAARLF 109

Query: 139 PFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
             + +AC  L   R    +HA   +SG  ++ F  N LM  YA    L+ AR+LF+ + +
Sbjct: 110 SHLFRACRALRPLR---QLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPR 166

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG-------------------------- 232
               +++SWN +   Y ++GD  G   LF  M                            
Sbjct: 167 R---NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFF 223

Query: 233 -DVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            D++ +G   D   L +    CA L     G+Q         V      +D+   +++  
Sbjct: 224 LDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQV-----HAYVVRSGLDRDMCVGSSLAH 278

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y R G  ++  A+ + +      L++V+ + +IAG  Q G    AL+ F  M+  G+  
Sbjct: 279 MYMRCGCLQEGEAVLRML----PSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAA 334

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV- 407
           +VVT VS +S C+ + AL  G++ H   +K    VD   P    V+  L+ MY++C  + 
Sbjct: 335 DVVTFVSAISSCSDLAALAQGQQIHGQVMK--AGVDKVVP----VMTCLVHMYSRCGCLG 388

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           D  RV F        D    + MI +Y  +G    A+ LF QM       +P+  T    
Sbjct: 389 DSERVFFGYCGS---DTFLLSAMISAYGFHGHGQKAIELFKQMMNGG--AEPSDVTFLAL 443

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK- 524
           L AC+       G  +  + L  +   + P V +  C++D+  RSG +D A  +  ++  
Sbjct: 444 LYACSHSGLKEEG--MDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPL 501

Query: 525 QRNVVSWTSLMT 536
             + V W +L++
Sbjct: 502 TPDGVIWKTLLS 513



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           ALR  RQ+HA+   +       F AN L+  Y+  GD+  AR +F+ + +RNV+SW  L 
Sbjct: 118 ALRPLRQLHAFAATSGAAT-DRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILF 176

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            GY  +G    A   FD+M +  +A    T+  ++   ++ G  ++ L +F  M +E
Sbjct: 177 GGYIKNGDLGGARKLFDEMPERNVA----TWNAMVAGLTNLGFDEESLGFFLDMRRE 229


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/652 (37%), Positives = 370/652 (56%), Gaps = 30/652 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           + F WN LIR    +        ++ QM+R G  PD++TFPFVLKAC +    R G  VH
Sbjct: 6   TAFLWNTLIR-GYSIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVH 64

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             +   GF+S+VFV N L++ Y  C  L  A ++FDEM +    D+VSWNT++  ++ +G
Sbjct: 65  GSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEK---DLVSWNTMIGVFSVNG 121

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                 +   R+  D  ++ + +++ + L     L  +  G+      E      RM ++
Sbjct: 122 WHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGR------EVHGSSIRMGLE 175

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D+   N+++  Y++ G   +A  +F K+  +NV    V+W+A+IA +AQ      A+ +
Sbjct: 176 SDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNV----VSWNAMIANFAQNRFELVAVGL 231

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
            RQMQ  G  PN VT  ++L  CA +G +  GKE H  +I    + D      L V NAL
Sbjct: 232 VRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFD------LFVSNAL 285

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
            DMYAK   + +AR +FD      RD  ++ ++I  +SQ    +++L+LF +M  Q   +
Sbjct: 286 TDMYAKSGHLKLARNVFDT---SLRDEVSYNILIVGHSQTSDCSESLSLFSEM--QLMGL 340

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           K +  +   AL ACA L A++ G++IH ++LR  + + + FVAN L+D Y++ G I  AR
Sbjct: 341 KQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHL-FVANSLLDFYTKCGRIGLAR 399

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD +  ++V SW +++ GYGM G  D A   F+ MRK+ +  D V+F+ +L ACSH G
Sbjct: 400 NIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGG 459

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           ++++G KYFD + K  GI     HYAC+VDLLGRA  ++EA ELI+G+P+ P   IW AL
Sbjct: 460 LLEKGRKYFDEL-KARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGAL 518

Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
           L  CRI+ N+EL   AA  L EL+ E  G YTLLSN+YA  GRW +  RIR LMK  GVK
Sbjct: 519 LGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVK 578

Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ--RIKAMGYVPQT 747
           K PGCSWVQ  E    F VG++       ++   +  V   R+  + ++P++
Sbjct: 579 KSPGCSWVQIGEQAHAFVVGEKIEGLDLGLWPFKSKAVPLFRLTILDFLPKS 630


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 325/572 (56%), Gaps = 15/572 (2%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A+++FER+  ++V+SWN +  GY + G    A  LF +M + NV     TW+A++
Sbjct: 90  GDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNV----ATWNAMV 145

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           AG    G   E+L  F  M+  G+ P+   L S+   CA +  ++ G++ H Y ++  L 
Sbjct: 146 AGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLD 205

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  D+ V ++L  MY +C  +     +   +   +  + +   +I   +QNG +  
Sbjct: 206 ------RDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLS--IVSCNTIIAGRTQNGDSEG 257

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           AL  F  M  +   V  +  T   A+ +C+ LAAL  G+QIH  V++   + ++P V  C
Sbjct: 258 ALEYFCMM--RSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVP-VMTC 314

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ MYSR G +  +  VF      +    +++++ YG HG G KA   F QM   G  P 
Sbjct: 315 LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS 374

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            VTFL LLYACSHSG+ ++G+  F+ M+K +G+    +HY C+VDLLGR+  LDEA  LI
Sbjct: 375 DVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI 434

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MP+ P  +IW  LL+ C+   N ++ E  A R++EL+     SY LLSNI A + RW 
Sbjct: 435 LSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWG 494

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DV+ +R  M+   V+K PG SWV+ K     F  GD +HP+ ++I E L  ++ +I+  G
Sbjct: 495 DVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCG 554

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y P  S  LHD++DEEK   L  HSEKLA+A+  L+   G PIR+ KNLR+C DCH AI 
Sbjct: 555 YSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIK 614

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +S +   EI++RD +RFHHFK+G C+C+ YW
Sbjct: 615 LMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 183/428 (42%), Gaps = 52/428 (12%)

Query: 38  KITSLLLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISP 95
           ++ S L R C++L  +  +H               +HL+ AY      + A  L +RI P
Sbjct: 45  RLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERI-P 103

Query: 96  SPFSVFW------------------------------WNALIRRAVRLRLPDNAFRLFLQ 125
               + W                              WNA++     L   + +   FL 
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 163

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M R G HPDE+    V + C  L     G  VHA +  SG D ++ V ++L  MY RC  
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 223

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L     +   +  P +  IVS NTI+A   Q+GD+EG L  F  M   V V  D V+ V+
Sbjct: 224 LQEGEAVLRML--PSL-SIVSCNTIIAGRTQNGDSEGALEYFCMMR-SVGVAADVVTFVS 279

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A+S+C+ L   ++G+Q        +V +    K V     +V  YSR G   D+  +F  
Sbjct: 280 AISSCSDLAALAQGQQI-----HGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFG 334

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
               +  L     SA+I+ Y   GHG +A+++F+QM   G EP+ VT ++LL  C+  G 
Sbjct: 335 YCGSDTFL----LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSG- 389

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
            L  +   C+ +  +    G  P  +     ++D+  +   +D A  +  ++ P   D  
Sbjct: 390 -LKEEGMDCFEL--MTKTYGMQP-SVKHYTCVVDLLGRSGCLDEAEALILSM-PLTPDGV 444

Query: 426 TWTVMIGS 433
            W  ++ +
Sbjct: 445 IWKTLLSA 452



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 196/467 (41%), Gaps = 65/467 (13%)

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           +  +R     RL D   R F  ++   W      F  + +AC  L   R    +HA   +
Sbjct: 16  DEFVRLCATGRLRDALRRPFRGVL---WSDAARLFSHLFRACRALRPLR---QLHAFAAT 69

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           SG  ++ F  N LM  YA    L+ AR+LF+ + +    +++SWN +   Y ++GD  G 
Sbjct: 70  SGAATDRFTANHLMLAYADLGDLTAARELFERIPRR---NVMSWNILFGGYIKNGDLGGA 126

Query: 224 LMLFARMTG---------------------------DVKVQG---DGVSLVNALSACASL 253
             LF  M                             D++ +G   D   L +    CA L
Sbjct: 127 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 186

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                G+Q         V      +D+   +++   Y R G  ++  A+ + +      L
Sbjct: 187 RDVVTGRQV-----HAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRML----PSL 237

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           ++V+ + +IAG  Q G    AL+ F  M+  G+  +VVT VS +S C+ + AL  G++ H
Sbjct: 238 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 297

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIG 432
              +K    VD   P    V+  L+ MY++C  + D  RV F        D    + MI 
Sbjct: 298 GQVMK--AGVDKVVP----VMTCLVHMYSRCGCLGDSERVFFGYCGS---DTFLLSAMIS 348

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
           +Y  +G    A+ LF QM       +P+  T    L AC+       G  +  + L  + 
Sbjct: 349 AYGFHGHGQKAIELFKQMMNGG--AEPSDVTFLALLYACSHSGLKEEG--MDCFELMTKT 404

Query: 493 EMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMT 536
             + P V +  C++D+  RSG +D A  +  ++    + V W +L++
Sbjct: 405 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLS 451



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           ALR  RQ+HA+   +       F AN L+  Y+  GD+  AR +F+ + +RNV+SW  L 
Sbjct: 56  ALRPLRQLHAFAATSG-AATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILF 114

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            GY  +G    A   FD+M +  +A    T+  ++   ++ G  ++ L +F  M +E
Sbjct: 115 GGYIKNGDLGGARKLFDEMPERNVA----TWNAMVAGLTNLGFDEESLGFFLDMRRE 167


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 343/566 (60%), Gaps = 20/566 (3%)

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           +VF+ +  +D    + +VT Y+++G  EDA  LF  M  +++    V+W+++I+G+++  
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDL----VSWNSLISGFSRCL 119

Query: 330 HGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           H   +L  F  M+F   ++PN VT++S++S C+  GAL  GK  H + IK    V G+  
Sbjct: 120 H--MSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIK----VGGTL- 170

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            ++ V N+LI+MY K   +  A  +F+AI   N    +W  +I +   NG A + +  F 
Sbjct: 171 -EVKVANSLINMYGKSGDLTSACRLFEAIPDPN--TVSWNSIIAAQVTNGCAREGIDYFN 227

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M +    ++ +  T+   L AC  L   +    IH  +    +   I  +A  L+D Y+
Sbjct: 228 KMRRLG--IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKIT-IATALLDTYA 284

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G +  +  VF  +   + V+WT+++ GY  HGLG +A   F+ M  +GL PD VTF  
Sbjct: 285 KLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTH 344

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           LL ACSHSG+V++G  YF+ MS+ +GI  R +HY+C+VDLLGR   L++A E+I+ MPME
Sbjct: 345 LLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPME 404

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           P   +W ALL  CR+H N+ELG+  A  L+ +E     +Y +LSN+Y+ +  WKD A++R
Sbjct: 405 PNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVR 464

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
           +L+K  G+K+ PG S ++       FFVGDR+HP+++KIY  L  L+ +I+  GY  +T 
Sbjct: 465 ALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTE 524

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
           + L DV++E K D++ +HSEKLA+A+G+L +  G  + ITKNLRICGDCHS    IS+I 
Sbjct: 525 YVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIE 584

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
              II+RD  RFHHF +G C+C  YW
Sbjct: 585 KRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 191/468 (40%), Gaps = 88/468 (18%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L A    PS      +HA +  S    + F+ + L+  Y +      A +LFD+M    
Sbjct: 45  LLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHK- 103

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             D+VSWN++++ +++       L  F  M  ++ V+ + V++++ +SAC+  G    GK
Sbjct: 104 --DLVSWNSLISGFSRC--LHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGK 157

Query: 261 --------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     + G +  A ++FE +   + VSWN+++       
Sbjct: 158 YIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSII------- 210

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
                                       A     G   E +D F +M+  G+E +  T++
Sbjct: 211 ----------------------------AAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           +LL  C  +G   L +  H       L         + +  AL+D YAK   +  +  +F
Sbjct: 243 ALLQACLHLGVGKLAESIHG------LMFCTGFGAKITIATALLDTYAKLGRLSASYGVF 296

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             +   +R    WT M+  Y+ +G   +A+ LF  M   +K ++P+  T +  L AC+  
Sbjct: 297 TEVGFADR--VAWTAMLAGYAAHGLGREAIKLFESM--ANKGLEPDHVTFTHLLSACSHS 352

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSW 531
             +  G+    + + ++   + P V +  C++D+  R G ++ A  V  N+  + N   W
Sbjct: 353 GLVNEGKSY--FNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVW 410

Query: 532 TSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
            +L+    +HG   LG +   A   +  E L P     L  +Y+ S S
Sbjct: 411 GALLGACRVHGNIELGKEV--AEHLINMEPLDPRNYIMLSNMYSASRS 456



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 149/359 (41%), Gaps = 47/359 (13%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y      + A  L + I P P +V W N++I   V           F +M R G  
Sbjct: 178 LINMYGKSGDLTSACRLFEAI-PDPNTVSW-NSIIAAQVTNGCAREGIDYFNKMRRLGIE 235

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            DE T   +L+AC  L   +   S+H ++  +GF + + +  AL+  YA+   LS +  +
Sbjct: 236 QDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGV 295

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F E+   G  D V+W  ++A YA  G     + LF  M  +  ++ D V+  + LSAC+ 
Sbjct: 296 FTEV---GFADRVAWTAMLAGYAAHGLGREAIKLFESM-ANKGLEPDHVTFTHLLSACSH 351

Query: 253 LGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            G  + GK    +M E   +  R     V  ++ MV    R G   DA+ + + M  E  
Sbjct: 352 SGLVNEGKSYFNVMSEVYGIEPR-----VDHYSCMVDLLGRCGLLNDAYEVIQNMPMEP- 405

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP----NVVTLVSLLSG------CA 361
             N   W A++   A R HG+  L          +EP    N + L ++ S        A
Sbjct: 406 --NAGVWGALLG--ACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 362 SVGALL---------------LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            V ALL                G + H + +      D SHP+   + + L ++  K +
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVG-----DRSHPETEKIYSKLEELLGKIR 515


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 300/493 (60%), Gaps = 20/493 (4%)

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+  T   L+  CA + AL  G+  H    K            + V N+L+ +Y  C   
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTL------VFVQNSLVHLYGACGLF 167

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + A  +FD +  + R++ +W  M+ S++ NG  N+ L +F +M   D    P+ FT+   
Sbjct: 168 ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD--FAPDGFTIVSV 225

Query: 468 LMACARLAALRFGRQIHAYV-----LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           L ACA   AL  GR++H YV     + N +      V+N LID+Y++ G ++ AR +F+ 
Sbjct: 226 LTACAEFGALALGRRVHVYVEKVGLVENSH------VSNALIDLYAKCGSVNDARRIFEE 279

Query: 523 LK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +   R VVSWTSL+ G   +G G +A   F  M +E L P  +T + +LYACSH G+VD 
Sbjct: 280 MGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDD 339

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G +YFD M +++GIS R EH  C+VDLLGRA R++EA + I  MP+EP  ++W  LL  C
Sbjct: 340 GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSC 399

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
            +H  +ELG++A  RL+EL+    G Y LLSN+YA  G W DV  +R  M    V+K PG
Sbjct: 400 AMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPG 459

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            S V+ +     F +GDR+HP+S++IYE+LA + +R++  GY+P+TS  L D+++EEK  
Sbjct: 460 HSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519

Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
            L  HSE+LA+A+ +L + PG PIRI KNLR+CGDCH A   IS + + EII+RD +RFH
Sbjct: 520 ALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFH 579

Query: 822 HFKEGSCTCKGYW 834
           HF+ G+C+CK YW
Sbjct: 580 HFQGGACSCKDYW 592



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 200/415 (48%), Gaps = 39/415 (9%)

Query: 37  IKITSLLLRQCKSLTQVYLIHQQIIVQNLTH-------VPPSH-LIAAYV-----SHNAP 83
           I  T   LR C +L +++L    +      H       VP SH L+A ++     +  AP
Sbjct: 5   IPSTRPALRHCVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAP 64

Query: 84  SP--ALSLLQRISP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
               A+++L R+ P  P   F  N ++R A     P  A  L     RR   PD +T+P 
Sbjct: 65  PLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALELH---RRRLALPDTHTYPP 121

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +++AC  L + R G  +HA    +GF + VFV N+L+ +Y  C     A ++FDEM   G
Sbjct: 122 LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG 181

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSWN+++ ++A +G     L +F  M G V    DG ++V+ L+ACA  G  + G+
Sbjct: 182 R-NLVSWNSMLNSFAANGRPNEVLTVFWEMLG-VDFAPDGFTIVSVLTACAEFGALALGR 239

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +  +  E   + E   V      NA++  Y++ GS  DA  +F++M    +   VV+W++
Sbjct: 240 RVHVYVEKVGLVENSHVS-----NALIDLYAKCGSVNDARRIFEEM---GLGRTVVSWTS 291

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I G A  G G EAL++F  M+   L P  +T+V +L  C+  G +  G         R+
Sbjct: 292 LIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFR----YFDRM 347

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI--APKNRDVATWTVMIGS 433
               G  P  +  +  ++D+  +   V+ A   +D I   P   +   W  ++GS
Sbjct: 348 KEDYGISP-RIEHLGCMVDLLGRAGRVEEA---YDYIITMPLEPNAVVWRTLLGS 398



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 183/402 (45%), Gaps = 34/402 (8%)

Query: 149 PSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYA--RCDTLSYARQLFDEMFQPGICDIV 205
           PS      +HA    +G   S+  +   L+   A  R   L YA  +   +   G  D  
Sbjct: 26  PSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPF 85

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
             NT++   A S      L L  R         D  +    + ACA L     G +C   
Sbjct: 86  PLNTVLRIAAGSPRPRVALELHRRRLA----LPDTHTYPPLIQACARLLALREG-ECLHA 140

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
           E AK  F    V  V   N++V  Y   G FE A  +F +M       N+V+W++++  +
Sbjct: 141 EAAKNGF----VTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG--RNLVSWNSMLNSF 194

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           A  G  +E L VF +M      P+  T+VS+L+ CA  GAL LG+  H Y +++V  V+ 
Sbjct: 195 AANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVY-VEKVGLVEN 253

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
           SH     V NALID+YAKC SV+ AR +F+ +    R V +WT +I   + NG   +AL 
Sbjct: 254 SH-----VSNALIDLYAKCGSVNDARRIFEEMG-LGRTVVSWTSLIVGLAANGFGKEALE 307

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALR-----FGRQIHAYVLRNQYEMLIPFVA 500
           LF  + +++KLV P   T+   L AC+    +      F R    Y +  + E L     
Sbjct: 308 LF-SLMEREKLV-PTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHL----- 360

Query: 501 NCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            C++D+  R+G ++ A      +  + N V W +L+    MH
Sbjct: 361 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMH 402



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 132/315 (41%), Gaps = 61/315 (19%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN+++        P+    +F +M+   + PD +T   VL AC E  +   G  VH  + 
Sbjct: 187 WNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVE 246

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
             G   N  V NAL+ +YA+C +++ AR++F+EM   G+   +VSW +++   A +G  +
Sbjct: 247 KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM---GLGRTVVSWTSLIVGLAANGFGK 303

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L LF+ M  + K+    +++V  L AC+          CG++++  + F+RMK    +
Sbjct: 304 EALELFSLMERE-KLVPTEITMVGVLYACS---------HCGLVDDGFRYFDRMKEDYGI 353

Query: 282 S-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           S        MV    R G  E+A+     M                              
Sbjct: 354 SPRIEHLGCMVDLLGRAGRVEEAYDYIITM------------------------------ 383

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
                    LEPN V   +LL  CA    L LGK       +R++ +D  H  D ++++ 
Sbjct: 384 --------PLEPNAVVWRTLLGSCAMHKKLELGK----VAWERLVELDPGHSGDYVLLSN 431

Query: 397 LIDMYAKCKSVDVAR 411
           L         V V R
Sbjct: 432 LYAAVGMWADVHVLR 446


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 316/545 (57%), Gaps = 24/545 (4%)

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           +R  SFE +  +F  +R+ NV L    W+ +I    +     +A+ ++ +M      PN 
Sbjct: 103 NRYLSFESSLRVFDFVRKPNVFL----WNCMIKVCIENNEPFKAILLYYEMMVAHFRPNK 158

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            T  ++L  C+  G +  G + H + +K  L  DG       ++++ I MYA    +  A
Sbjct: 159 YTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGH------ILSSAIRMYASFGRLVEA 212

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           R + D       D       +    + G   +AL +F QM  Q + ++P  F L   L A
Sbjct: 213 RRILD-------DKGGEVDAVCMPDRKGCFMEALEIFHQM--QKEKIRPRKFVLPSVLSA 263

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           CA L AL  GR IH Y  RN  + L   +   L+DMY++ G ID A  VF+ +  + V S
Sbjct: 264 CANLGALDQGRWIHTYAKRNSIQ-LDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 322

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           W +++ G  MHG   +A  A D   K  + P+ +TF+ +L AC+H G+V +GL  F+SM 
Sbjct: 323 WNAMIGGLAMHG---RAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMR 379

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
           KE+G+  + EHY CIVDLLGRA  L EA +++  +P EPTP +W ALL  CR H NVELG
Sbjct: 380 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELG 439

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ-GKE 709
           E     LLELE +  G YTLLSNIYA AGRW++V  +R LMK  G+K  PG S +  G+ 
Sbjct: 440 ERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRG 499

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F +GD +HPQ + IY++L  + +R++  GY P  S  L D+D+EEK   +++HSEK
Sbjct: 500 EVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEK 559

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+ +G++ T+PGT IRI KNLR+C DCHSA   IS + N EII+RD  R+HHF+ G+C+
Sbjct: 560 LAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACS 619

Query: 830 CKGYW 834
           CK +W
Sbjct: 620 CKDFW 624



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 138/574 (24%), Positives = 246/574 (42%), Gaps = 83/574 (14%)

Query: 13  SKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSH 72
           ++ P   +HL  N      +      I  LL  QC +    +L     ++    H+  S+
Sbjct: 30  TEAPYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLH-HLKQAHALILRTGHLQDSY 88

Query: 73  LIAAYVSHNA---PSPALSLLQRISPSPF----SVFWWNALIRRAVRLRLPDNAFRLFLQ 125
           +  + V   A    +  LS    +    F    +VF WN +I+  +    P  A  L+ +
Sbjct: 89  IAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYE 148

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           MM   + P++YT+P VLKAC +      G  VHA +   G   +  + ++ + MYA    
Sbjct: 149 MMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGR 208

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L  AR++ D+  + G  D V        + ++      L +F +M  + K++     L +
Sbjct: 209 LVEARRILDD--KGGEVDAVCMPDRKGCFMEA------LEIFHQMQKE-KIRPRKFVLPS 259

Query: 246 ALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKD 279
            LSACA+LG   +G+                          +CG ++ A +VFE+M  K+
Sbjct: 260 VLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKE 319

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V SWNAM+ G +  G  EDA  LF KM   ++  N +T+  V+   A  G   + L +F 
Sbjct: 320 VSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFN 376

Query: 340 QM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            M +  G+EP +        GC      LLG+       ++V+S   + P    V  AL+
Sbjct: 377 SMRKEYGVEPQIEHY-----GCI---VDLLGRAGLLTEAEKVVSSIPTEPTP-AVWGALL 427

Query: 399 DMYAKCKSVD----VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
               K  +V+    V +++ + + P+N     +T++   Y++ G        + ++ +  
Sbjct: 428 GACRKHGNVELGERVGKILLE-LEPQNS--GRYTLLSNIYAKAG-------RWEEVGEVR 477

Query: 455 KLVKPNAF--TLSCALMACARLAALRF--GRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
           KL+K      T   +++   R    +F  G   H  V ++ Y+ML        ++ Y   
Sbjct: 478 KLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQV-KDIYQMLDKVKERLQMEGY--- 533

Query: 511 GDIDTARVVFD-NLKQRNVVSW---TSLMTGYGM 540
            + D ++V+FD + +++    W     L  G+G+
Sbjct: 534 -EPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGL 566


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/573 (37%), Positives = 327/573 (57%), Gaps = 42/573 (7%)

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           S+ G    A  +F K+   +  +    ++ +  GY +       + ++ +M    + PN 
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYI----YNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNK 120

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            T   L+  C    A+  GK+ H + +K     DG        +N LI MY   +S++ A
Sbjct: 121 FTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADG------FSLNNLIHMYVNFQSLEQA 174

Query: 411 RVMFDAIAPKN-----------------------------RDVATWTVMIGSYSQNGGAN 441
           R +FD +  ++                             R+  +W  MI +Y Q+   +
Sbjct: 175 RRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLH 234

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +A ALF +M  ++ ++  + F  +  L AC  L AL  G+ IH Y+ ++  E L   +A 
Sbjct: 235 EAFALFDRMRLENVVL--DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSKLAT 291

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            +IDMY + G ++ A  VF+ L Q+ + SW  ++ G  MHG G+ A   F +M +E +AP
Sbjct: 292 TVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAP 351

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           DG+TF+ +L AC+HSG+V++G  YF  M++  G+    EH+ C+VDLLGRA  L+EA +L
Sbjct: 352 DGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKL 411

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           I  MP+ P   +  AL+  CRIH N ELGE    +++ELE    G Y LL+N+YA+AGRW
Sbjct: 412 INEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRW 471

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
           +DVA++R LM   GVKK PG S ++ + G   F  G R HPQ+++IY  L  +++ I+++
Sbjct: 472 EDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSI 531

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GYVP T   LHD+D+EEK + L+ HSEKLA+A+G+L T PG  +RI+KNLRIC DCH A 
Sbjct: 532 GYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQAS 591

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             IS + + EII+RD NRFHHF+ G C+CK YW
Sbjct: 592 KLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 164/382 (42%), Gaps = 66/382 (17%)

Query: 30  SVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP---- 85
           S+++    K+    L  C ++ ++   H QII   L+    +  +   +   A S     
Sbjct: 13  SLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLS--ADNDAMGRVIKFCAISKSGDL 70

Query: 86  --ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
             AL +  +I P P   + +N + R  +R +L  N   ++ +M+ +   P+++T+P +++
Sbjct: 71  NYALEVFDKI-PHP-DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIR 128

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC- 202
           AC    +   G  +HA +   GF ++ F  N L+ MY    +L  AR++FD M Q  +  
Sbjct: 129 ACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVS 188

Query: 203 ---------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
                                      + VSWN ++AAY QS        LF RM  +  
Sbjct: 189 WTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLE-N 247

Query: 236 VQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMMEEAK 269
           V  D     + LSAC  LG   +GK                          +CG +E+A 
Sbjct: 248 VVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKAS 307

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           +VF  +  K + SWN M+ G +  G  E A  LFK+M +E V  + +T+  V++  A  G
Sbjct: 308 EVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSG 367

Query: 330 HGHEALDVFRQM-QFCGLEPNV 350
              E    F+ M +  GL+P +
Sbjct: 368 LVEEGKHYFQYMTEVLGLKPGM 389



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 31/218 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   V+      AF LF +M       D++    +L AC  L +   G  +H  I 
Sbjct: 220 WNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIE 279

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SG + +  +   ++ MY +C  L  A ++F+E+ Q GI    SWN ++   A  G  E 
Sbjct: 280 KSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGIS---SWNCMIGGLAMHGKGEA 336

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------------------- 260
            + LF  M  ++ V  DG++ VN LSACA  G    GK                      
Sbjct: 337 AIELFKEMEREM-VAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCM 395

Query: 261 -----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
                + G++EEA+K+   M V         + G  RI
Sbjct: 396 VDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI 433


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 328/555 (59%), Gaps = 12/555 (2%)

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           VS+N  +  +      E + +  + +     + ++V ++++  GY++  +  E  ++F +
Sbjct: 62  VSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVE 121

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +    L P+  T  SLL  CA   AL  G++ HC ++K  L VD    D++ V   LI+M
Sbjct: 122 ILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMK--LGVD----DNVYVCPTLINM 175

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y +C+ VD AR +FD I      V  +  MI  Y++    N+AL+LF +M  Q K +KPN
Sbjct: 176 YTECEDVDAARCVFDRIVEPC--VVCYNAMITGYARRNRPNEALSLFREM--QGKNLKPN 231

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             TL   L +CA L +L  G+ IH Y  ++ +   +  V   LIDM+++ G +D A  +F
Sbjct: 232 EITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVK-VNTALIDMFAKCGSLDDAVSIF 290

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           +N++ ++  +W++++  Y  HG  + +   F++MR E + PD +TFL LL ACSH+G+V+
Sbjct: 291 ENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVE 350

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G +YF  M  EFGI    +HY  +VDLLGRA  L++A E I+ +P+ PTP++W  LL  
Sbjct: 351 EGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAA 410

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           C  H N+EL E  + R+LEL+    G Y +LSN+YA   +W+ V  +R +MK     K P
Sbjct: 411 CSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVP 470

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH-DVDDEEK 759
           GCS ++       FF GD     + K++  L  +V+ +K  GYVP TS  +H D+ D+EK
Sbjct: 471 GCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEK 530

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
              L  HSEKLA+A+G+L T PGT IR+ KNLR+C DCHSA   IS+I   +++LRD  R
Sbjct: 531 EITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQR 590

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF++G C+C+ +W
Sbjct: 591 FHHFEDGKCSCRDFW 605



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 209/458 (45%), Gaps = 74/458 (16%)

Query: 26  IKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSP 85
           +K+ +V   P   I  LL+ +C S  ++  I    I  +   V  +  +  + + +    
Sbjct: 22  LKIDTVNPNPPNPI--LLISKCNSERELMQIQAYAIKSHQEDVSFNTKLINFCTESPTES 79

Query: 86  ALSLLQRI--SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLK 143
           ++S  + +  + S   +  +N++ R   R   P   F LF++++     PD YTFP +LK
Sbjct: 80  SMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLK 139

Query: 144 ACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           AC    +   G  +H +    G D NV+VC  L+ MY  C+ +  AR +FD + +P    
Sbjct: 140 ACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPC--- 196

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--- 260
           +V +N ++  YA+       L LF  M G   ++ + ++L++ LS+CA LG+   GK   
Sbjct: 197 VVCYNAMITGYARRNRPNEALSLFREMQGK-NLKPNEITLLSVLSSCALLGSLDLGKWIH 255

Query: 261 -----------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
                                  +CG +++A  +FE M+ KD  +W+AM+  Y+  G  E
Sbjct: 256 EYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAE 315

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM--QFCGLEPNV----- 350
           ++  +F++MR ENV+ + +T+  ++   +  G   E  + F  M  +F G+ P++     
Sbjct: 316 NSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEF-GIVPSIKHYGS 374

Query: 351 -VTLVS--------------------------LLSGCASVGALLLGKETHCYTIKRVLSV 383
            V L+                           LL+ C+S   L L ++      +R+L +
Sbjct: 375 MVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVS----ERILEL 430

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVAR-VMFDAIAPK 420
           D SH  D ++++ L     K ++VD  R VM D  A K
Sbjct: 431 DDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVK 468


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 345/589 (58%), Gaps = 22/589 (3%)

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
           A+ +CA+L     GKQ         VF+   + +     ++++ Y +    ++A  LF +
Sbjct: 16  AIKSCAALSLPITGKQLHC-----HVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDE 70

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
             Q   KL  V ++++++GYA      + + +F +M+  G+E N VT++ L+  C   G 
Sbjct: 71  NPQSR-KL-TVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGN 128

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L LG   H + +K  L +D S      V N L+ MY K   +D  R +FD +  K   + 
Sbjct: 129 LGLGMCVHGFCVKFGLDMDSS------VGNCLLTMYVKSGEIDCGRKLFDEMPRKG--LI 180

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           TW  MI  Y+QNG AN+ L L+ +M  + K   P+  TL   L +CA L AL  G+++  
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEM--ESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
            +    +    PF+ N L++MY+R G++  AR +FD +  ++VVSWT+++ GYGMHG G+
Sbjct: 239 KMEGFGFSS-NPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGE 297

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
            A   FD+M + G+ PDG  F+ +L ACSH+G+ ++GL YF  M +++G+   AEHY+C+
Sbjct: 298 VAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCM 357

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGRA RL+EA ELIE M +     +W ALL  C+IH NVEL ELA  +++ELE    
Sbjct: 358 VDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNT 417

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
           G Y LLSN+Y  AG  + + R+R LM+   +KK PGCS+V+ K     FF GDR HPQ+ 
Sbjct: 418 GYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTN 477

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +IY+ L  L   +K +    +     H+   EE  + +  HSEKLA+A+ +L T   T I
Sbjct: 478 EIYKKLNELENLVKDLDGCKKND---HE-RREEYLNSMGVHSEKLAVAFALLNTRKETEI 533

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I KNLRICGDCH  I  +S I++ + ++RD+ RFHHFK G C+CK YW
Sbjct: 534 IIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 221/477 (46%), Gaps = 86/477 (18%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+R G  P+ +TFPF +K+C  L     G  +H  +  +G     FV  +L++MY +C  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  AR+LFDE  Q      V +N++++ YA +   +  ++LF  M  ++ V+ +GV+++ 
Sbjct: 61  IDNARKLFDENPQSRKL-TVCYNSLLSGYALNSRVKDVVVLFCEMR-ELGVEINGVTMLG 118

Query: 246 ALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKD 279
            +  C   G    G                           + G ++  +K+F+ M  K 
Sbjct: 119 LVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKG 178

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           +++WNAM+ GY++ G   +   L+K+M  +                              
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKG----------------------------- 209

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
              FC   P+ +TLV +LS CA +GAL +GKE     ++R +   G   +  +  NAL++
Sbjct: 210 ---FC---PDPLTLVGVLSSCAHLGALSVGKE-----VERKMEGFGFSSNPFLN-NALVN 257

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MYA+C ++  AR +FD +  K+  V +WT +IG Y  +G    A+ LF +M +    +KP
Sbjct: 258 MYARCGNLKKARDIFDGMPVKS--VVSWTAIIGGYGMHGQGEVAVGLFDEMIRGG--IKP 313

Query: 460 NAFTLSCALMACARLAALR-----FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           +       L AC+           FG     Y LR   E       +C++D+  R+G ++
Sbjct: 314 DGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHY-----SCMVDLLGRAGRLN 368

Query: 515 TARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            AR + ++++ R +   W +L+    +H   + A  AF+Q+ +  L P    + VLL
Sbjct: 369 EARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIE--LEPTNTGYYVLL 423



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 135/299 (45%), Gaps = 32/299 (10%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIR-RAVRLRLPDNAFRLFLQMMRR 129
           + LI+ Y   +    A  L      S      +N+L+   A+  R+ D    LF +M   
Sbjct: 49  TSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKD-VVVLFCEMREL 107

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G   +  T   +++ CG   +   G  VH      G D +  V N L+ MY +   +   
Sbjct: 108 GVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCG 167

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           R+LFDEM + G   +++WN ++  YAQ+G A   L L+  M        D ++LV  LS+
Sbjct: 168 RKLFDEMPRKG---LITWNAMINGYAQNGLANNVLELYKEMESK-GFCPDPLTLVGVLSS 223

Query: 250 CASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSW 283
           CA LG  S GK+                          CG +++A+ +F+ M VK VVSW
Sbjct: 224 CAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSW 283

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            A++ GY   G  E A  LF +M +  +K +   + +V++  +  G  ++ LD F  M+
Sbjct: 284 TAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVME 342



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 120/258 (46%), Gaps = 17/258 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I    +  L +N   L+ +M  +G+ PD  T   VL +C  L +   G  V   + 
Sbjct: 182 WNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKME 241

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             GF SN F+ NAL+ MYARC  L  AR +FD M    +  +VSW  I+  Y   G  E 
Sbjct: 242 GFGFSSNPFLNNALVNMYARCGNLKKARDIFDGM---PVKSVVSWTAIIGGYGMHGQGEV 298

Query: 223 GLMLFARMT-GDVKVQGDGVSLVNALSACASLGTWSRG-KQCGMMEEAKKVFERMKVKDV 280
            + LF  M  G +K   DG + V+ LSAC+  G  ++G    G+ME  +K   R   +  
Sbjct: 299 AVGLFDEMIRGGIKP--DGTAFVSVLSACSHAGLTNKGLDYFGVME--RKYGLRPGAE-- 352

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
             ++ MV    R G   +A  L + M+   V+ +   W A++   A + H +  L     
Sbjct: 353 -HYSCMVDLLGRAGRLNEARELIESMQ---VRADGALWGALLG--ACKIHRNVELAELAF 406

Query: 341 MQFCGLEPNVVTLVSLLS 358
            Q   LEP       LLS
Sbjct: 407 EQVIELEPTNTGYYVLLS 424



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 12/209 (5%)

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PNAFT   A+ +CA L+    G+Q+H +V +    +L PFV   LI MY +   ID AR 
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGC-LLEPFVQTSLISMYGKCSLIDNARK 66

Query: 519 VFD-NLKQRNV-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           +FD N + R + V + SL++GY ++         F +MR+ G+  +GVT L L+  C   
Sbjct: 67  LFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIP 126

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G +  G+        +FG+   +    C++ +  ++  +D   +L + MP +   I W A
Sbjct: 127 GNLGLGM-CVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL-ITWNA 184

Query: 637 LLNGCRIHANVELGELAANRLLELESEKD 665
           ++NG   +A   L    AN +LEL  E +
Sbjct: 185 MING---YAQNGL----ANNVLELYKEME 206


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/599 (37%), Positives = 349/599 (58%), Gaps = 30/599 (5%)

Query: 239 DGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           D  S    L +CASL     G+Q  C ++    +        +     A+++ Y + G  
Sbjct: 49  DAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEA-------EPFVLTALISMYCKCGLV 101

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           EDA  +F++    + +L V  ++A+I+GY       +A  +FR+M+  G+  + VT++ L
Sbjct: 102 EDARKVFEE-NPHSSQLGV-CYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGL 159

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           +  C     L LG+  H   +K      G    ++ V+N+ I MY KC SV+  R +FD 
Sbjct: 160 VPLCTVPEYLWLGRSLHGECVK------GGTYSEVAVLNSFITMYMKCGSVESGRRLFDE 213

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +  K   + TW  +I  YSQNG A D L LF QM  +   V P+ FTL   L +CA L A
Sbjct: 214 MPVKG--LITWNAVISGYSQNGLAYDVLELFEQM--KSSGVCPDPFTLVSVLSSCAHLGA 269

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMT 536
            + G+++   V  N +   + F++N LI MY+R G++  AR VFD +  +++VSWT+++ 
Sbjct: 270 KKIGQEVGELVEANGFAPNV-FLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIG 328

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
            YGMHG+G+     FD M K G+ PDG  F+++L ACSHSG+ D+GL+ F +M +E+ + 
Sbjct: 329 CYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLE 388

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656
              EHY+C+VDLLGRA RLDEA+E I+ MP+EP   +W ALL  C+IH NV++ ELA  +
Sbjct: 389 PGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAK 448

Query: 657 LLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFV 716
           ++E E    G Y L+SNIY+++   + + RIR +M+    +K+PG S+V+ K     F  
Sbjct: 449 VIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLA 508

Query: 717 GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLALAYG 775
           GDR+H Q+++++ +L  L   +  +           D D  EE      EHSE+LA+A+G
Sbjct: 509 GDRSHEQTEEVHRMLDELETSVMELA-------GNMDCDRGEEVSSTTREHSERLAIAFG 561

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IL + PGT I + KNLR+C DCH  I  +S I++   ++RD++RFH+FK+G C+CK YW
Sbjct: 562 ILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 226/498 (45%), Gaps = 82/498 (16%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN  +R      L   +  L+  M+R G  PD ++FPF+LK+C  L     G  +H  + 
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDE---MFQPGICDIVSWNTIVAAYAQSGD 219
             G ++  FV  AL++MY +C  +  AR++F+E     Q G+C    +N +++ Y  +  
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVC----YNALISGYTANSK 133

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNAL----------------SACASLGTWSRGK--- 260
                 +F RM  +  V  D V+++  +                  C   GT+S      
Sbjct: 134 VSDAAFMFRRMK-ETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLN 192

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG +E  +++F+ M VK +++WNA+++GYS+ G   D   LF++M+      
Sbjct: 193 SFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSS---- 248

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                          G+ P+  TLVS+LS CA +GA  +G+E  
Sbjct: 249 -------------------------------GVCPDPFTLVSVLSSCAHLGAKKIGQE-- 275

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +  ++  +G  P ++ + NALI MYA+C ++  AR +FD +  K+  + +WT MIG 
Sbjct: 276 ---VGELVEANGFAP-NVFLSNALISMYARCGNLAKARAVFDIMPVKS--LVSWTAMIGC 329

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y  +G     L LF  M ++   ++P+       L AC+       G ++   + R    
Sbjct: 330 YGMHGMGETGLTLFDDMIKRG--IRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKL 387

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
              P   +CL+D+  R+G +D A    D++  + +   W +L+    +H   D A  AF 
Sbjct: 388 EPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFA 447

Query: 553 QMRKEGLAPDGVTFLVLL 570
           ++ +    P  + + VL+
Sbjct: 448 KVIE--FEPMNIGYYVLM 463


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 385/712 (54%), Gaps = 39/712 (5%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS-NVFVCNALMAMYARCDTLSYARQ 191
           PD +TFP VLK C  L +   G + H+     G  + +V+  N+L+A YAR   +  A +
Sbjct: 106 PDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAER 165

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +FD M  P   D+V+WN++V  Y  +G     L+ F  M   ++VQ DGV ++ AL+AC 
Sbjct: 166 VFDGM--PAR-DVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACC 222

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                 +G+     E    V       DV    +++  Y + G    A  +F  M    V
Sbjct: 223 LESALMQGR-----EVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTV 277

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
               VTW+ +I GYA      EA D F QM+  G +  VVT ++LL+ CA   + L G+ 
Sbjct: 278 ----VTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRS 333

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H Y  +R           +++  AL++MY+K   V  +  +F  +  K   + +W  MI
Sbjct: 334 VHGYITRRQFL------PHVVLETALLEMYSKVGKVKSSEKVFGQMTTKT--LVSWNNMI 385

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
            +Y       +A+ LF  +  Q   + P+ FT+S  + A   L  LR  RQ+H+Y++R  
Sbjct: 386 AAYMYKEMYMEAITLFLDLLNQP--LYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLG 443

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           Y      + N ++ MY+R GD+ ++R +FD +  ++V+SW +++ GY +HG G  A   F
Sbjct: 444 YGENT-LIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMF 502

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M+  GL P+  TF+ +L ACS SG+ D+G   F+SM +++G+  + EHY C+ DLLGR
Sbjct: 503 SEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGR 562

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK-----DG 666
           A  L E ++ IE MP++PT  +W +LL   R   ++++ E AA R+ +LE ++      G
Sbjct: 563 AGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTG 622

Query: 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQK 726
            Y L+S++YA+AGRWKDV RI+SLM+  G+++    S V+    + +F  GD THPQS+ 
Sbjct: 623 CYVLISSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKM 682

Query: 727 IYEI---LAGLVQRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782
           I E+   L+G +  ++  M     TS       D  +     +HS +LA+ +G+++T   
Sbjct: 683 IQEVSNFLSGKIGEMRDPMNQSDPTSL------DSRRTTEPNKHSVRLAVVFGLISTEAR 736

Query: 783 TPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           TPI + KN+RIC DCH A+  IS      I++ D+N +H F +GSC C  YW
Sbjct: 737 TPILVKKNVRICNDCHHALKLISKYSGRRIVVGDTNIYHQFSDGSCCCGDYW 788



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 30/270 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WN +I        P+ AF  F+QM   G   +  T   +L AC +  SS  G SVH
Sbjct: 276 TVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVH 335

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I    F  +V +  AL+ MY++   +  + ++F +M       +VSWN ++AAY    
Sbjct: 336 GYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTK---TLVSWNNMIAAYMYKE 392

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------- 261
                + LF  +     +  D  ++   + A   LG   + +Q                 
Sbjct: 393 MYMEAITLFLDLLNQ-PLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIM 451

Query: 262 ---------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                    CG +  ++++F++M  KDV+SWN M+ GY+  G    A  +F +M+   ++
Sbjct: 452 NAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLR 511

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N  T+ +V+   +  G   E    F  MQ
Sbjct: 512 PNESTFVSVLTACSVSGLTDEGWTQFNSMQ 541


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/444 (45%), Positives = 279/444 (62%), Gaps = 5/444 (1%)

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           L+ + A+I  YAK   +D ARV+FD +  + RD   W VMI  Y+Q+G  N+ L LF QM
Sbjct: 6   LVSLTAMITCYAKYGMIDEARVLFDGL--EERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
                 V+PN  T+   L AC +  AL  GR +H+Y+  N   + +  V   LIDMYS+ 
Sbjct: 64  LNAK--VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVR-VGTSLIDMYSKC 120

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G ++ AR+VF+ +  ++VV+W S++ GY MHG    A   F +M   G  P  +TF+ +L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
            ACSH+G+V +G K+F SM  E+GI  + EHY C+V+LLGRA  L+EA EL++ M ++  
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690
           P++W  LL  CR+H N+ LGE  A  L+       G+Y LLSNIYA AG W+ VAR+R+L
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFA 750
           MK +G +K PGCS ++       F  GD  HP+S++IYE+L  +   +K  GY PQT   
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHD++D +K   L  HSEKLALA+G++TT PGT I+I KNLR+C DCH+    IS I   
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           ++++RD NRFHHF  G C+C  YW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 147/271 (54%), Gaps = 19/271 (7%)

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
           M  K +VS  AM+T Y++ G  ++A  LF  + + +     + W+ +I GYAQ G  +E 
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDA----ICWNVMIDGYAQHGLPNEG 56

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           L +FRQM    + PN VT++++LS C   GAL  G+  H Y     + +      ++ V 
Sbjct: 57  LLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGI------NVRVG 110

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
            +LIDMY+KC S++ AR++F+ I+  N+DV  W  M+  Y+ +G + DAL LF +M    
Sbjct: 111 TSLIDMYSKCGSLEDARLVFERIS--NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIG 168

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGD 512
              +P   T    L AC+    +  G +   Y ++++Y  + P V +  C++++  R+G 
Sbjct: 169 --YQPTDITFIGVLNACSHAGLVSEGWKFF-YSMKDEYG-IEPKVEHYGCMVNLLGRAGY 224

Query: 513 IDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
           ++ A  +  N++  ++ V W +L+    +HG
Sbjct: 225 LEEAYELVKNMEIDQDPVLWGTLLGACRLHG 255



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 23/238 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +  LP+    LF QM+     P+E T   VL ACG+  +   G  VH+ I 
Sbjct: 40  WNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIE 99

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           ++G   NV V  +L+ MY++C +L  AR +F+ +      D+V+WN++V  YA  G ++ 
Sbjct: 100 NNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNK---DVVAWNSMVVGYAMHGFSQD 156

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            L LF  M   +  Q   ++ +  L+AC+           G++ E  K F  MK +    
Sbjct: 157 ALRLFKEMC-MIGYQPTDITFIGVLNACS---------HAGLVSEGWKFFYSMKDEYGIE 206

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             V  +  MV    R G  E+A+ L K M    +  + V W  ++   A R HG+ AL
Sbjct: 207 PKVEHYGCMVNLLGRAGYLEEAYELVKNME---IDQDPVLWGTLLG--ACRLHGNIAL 259



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 31/203 (15%)

Query: 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
           A++  YA+   +  AR LFD + +    D + WN ++  YAQ G    GL+LF +M  + 
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEER---DAICWNVMIDGYAQHGLPNEGLLLFRQML-NA 66

Query: 235 KVQGDGVSLVNALSACASLGTWSRGK--------------------------QCGMMEEA 268
           KV+ + V+++  LSAC   G    G+                          +CG +E+A
Sbjct: 67  KVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA 126

Query: 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328
           + VFER+  KDVV+WN+MV GY+  G  +DA  LFK+M     +   +T+  V+   +  
Sbjct: 127 RLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHA 186

Query: 329 GHGHEALDVFRQMQ-FCGLEPNV 350
           G   E    F  M+   G+EP V
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPKV 209


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/614 (38%), Positives = 358/614 (58%), Gaps = 30/614 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSS 156
           S+  +N +IR  VR  L  +A  +F++M+  G    PD YT+PFV KA GEL S + G  
Sbjct: 79  SLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLV 138

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VH  I  S F  + +V NAL+AMY     +  AR +FD M      D++SWNT+++ Y +
Sbjct: 139 VHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNR---DVISWNTMISGYYR 195

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +G     LM+F  M  +  V  D  ++V+ L  C  L     G+    + E K++ ++++
Sbjct: 196 NGYMNDALMMFDWMVNE-SVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIE 254

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           VK     NA+V  Y + G  ++A  +F +M + +V    +TW+ +I GY + G    AL+
Sbjct: 255 VK-----NALVNMYLKCGRMDEARFVFDRMERRDV----ITWTCMINGYTEDGDVENALE 305

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           + R MQF G+ PN VT+ SL+S C     +  GK  H + +++ +        D+++  +
Sbjct: 306 LCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVY------SDIIIETS 359

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI MYAKCK VD+   +F   +  +     W+ +I    QN   +DAL LF +M ++D  
Sbjct: 360 LISMYAKCKRVDLCFRVFSGASKYH--TGPWSAIIAGCVQNELVSDALGLFKRMRRED-- 415

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+PN  TL+  L A A LA LR    IH Y+ +  + M     A  L+ +YS+ G +++A
Sbjct: 416 VEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGF-MSSLDAATGLVHVYSKCGTLESA 474

Query: 517 RVVFDNL----KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             +F+ +    K ++VV W +L++GYGMHG G  A   F +M + G+ P+ +TF   L A
Sbjct: 475 HKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNA 534

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSHSG+V++GL  F  M + +   AR+ HY CIVDLLGRA RLDEA  LI  +P EPT  
Sbjct: 535 CSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTST 594

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W ALL  C  H NV+LGE+AAN+L ELE E  G+Y LL+NIYA  GRWKD+ ++RS+M+
Sbjct: 595 VWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMME 654

Query: 693 HTGVKKRPGCSWVQ 706
           + G++K+PG S ++
Sbjct: 655 NVGLRKKPGHSTIE 668



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 167/386 (43%), Gaps = 58/386 (15%)

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           CG +  A+K+FE M    ++S+N ++  Y R G + DA ++F +M  E VK         
Sbjct: 62  CGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVK--------- 112

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
                                     P+  T   +      + ++ LG   H   ++   
Sbjct: 113 ------------------------CVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWF 148

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
                   D  V NAL+ MY     V++AR +FD +  KNRDV +W  MI  Y +NG  N
Sbjct: 149 G------RDKYVQNALLAMYMNFGKVEMARDVFDVM--KNRDVISWNTMISGYYRNGYMN 200

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           DAL +F  M  +   V  +  T+   L  C  L  L  GR +H  V   +    I  V N
Sbjct: 201 DALMMFDWMVNES--VDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIE-VKN 257

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L++MY + G +D AR VFD +++R+V++WT ++ GY   G  + A      M+ EG+ P
Sbjct: 258 ALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRP 317

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI------VDLLGRANRL 615
           + VT   L+  C  +  V+ G           G + R + Y+ I      + +  +  R+
Sbjct: 318 NAVTIASLVSVCGDALKVNDG-------KCLHGWAVRQQVYSDIIIETSLISMYAKCKRV 370

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGC 641
           D    +  G     T   W A++ GC
Sbjct: 371 DLCFRVFSGASKYHTG-PWSAIIAGC 395


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 342/566 (60%), Gaps = 20/566 (3%)

Query: 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329
           +VF+ +  +D    + +VT Y+++G  EDA  LF  M  +++    V+W+++I+G+++  
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDL----VSWNSLISGFSRCL 119

Query: 330 HGHEALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
           H   +L  F  M+F   ++PN VT++S++S C   GAL  GK  H + IK    V G+  
Sbjct: 120 H--MSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIK----VGGTL- 170

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            ++ V N+LI+MY K   +  A  +F+AI   N    +W  +I +   NG A + +  F 
Sbjct: 171 -EVKVANSLINMYGKSGDLTSACRLFEAIPDPN--TVSWNSIIAAQVTNGCAREGIDYFN 227

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M +    ++ +  T+   L AC  L   +    IH  +    +   I  +A  L+D Y+
Sbjct: 228 KMRRLG--IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKIT-IATALLDTYA 284

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
           + G +  +  VF  +   + V+WT+++ GY  HGLG +A   F+ M  +GL PD VTF  
Sbjct: 285 KLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTH 344

Query: 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
           LL ACSHSG+V++G  YF+ MS+ +GI  R +HY+C+VDLLGR   L++A E+I+ MPME
Sbjct: 345 LLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPME 404

Query: 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
           P   +W ALL  CR+H N+ELG+  A  L+ +E     +Y +LSN+Y+ +  WKD A++R
Sbjct: 405 PNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVR 464

Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
           +L+K  G+K+ PG S ++       FFVGDR+HP+++KIY  L  L+ +I+  GY  +T 
Sbjct: 465 ALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTE 524

Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
           + L DV++E K D++ +HSEKLA+A+G+L +  G  + ITKNLRICGDCHS    IS+I 
Sbjct: 525 YVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIE 584

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
              II+RD  RFHHF +G C+C  YW
Sbjct: 585 KRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 190/468 (40%), Gaps = 88/468 (18%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L A    PS      +HA +  S    + F+ + L+  Y +      A +LFD+M    
Sbjct: 45  LLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHK- 103

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             D+VSWN++++ +++       L  F  M  ++ V+ + V++++ +SAC   G    GK
Sbjct: 104 --DLVSWNSLISGFSRC--LHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGK 157

Query: 261 --------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
                                     + G +  A ++FE +   + VSWN+++       
Sbjct: 158 YIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSII------- 210

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
                                       A     G   E +D F +M+  G+E +  T++
Sbjct: 211 ----------------------------AAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           +LL  C  +G   L +  H       L         + +  AL+D YAK   +  +  +F
Sbjct: 243 ALLQACLHLGVGKLAESIHG------LMFCTGFGAKITIATALLDTYAKLGRLSASYGVF 296

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             +   +R    WT M+  Y+ +G   +A+ LF  M   +K ++P+  T +  L AC+  
Sbjct: 297 TEVGFADR--VAWTAMLAGYAAHGLGREAIKLFESM--ANKGLEPDHVTFTHLLSACSHS 352

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSW 531
             +  G+    + + ++   + P V +  C++D+  R G ++ A  V  N+  + N   W
Sbjct: 353 GLVNEGKSY--FNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVW 410

Query: 532 TSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
            +L+    +HG   LG +   A   +  E L P     L  +Y+ S S
Sbjct: 411 GALLGACRVHGNIELGKEV--AEHLINMEPLDPRNYIMLSNMYSASRS 456



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 149/359 (41%), Gaps = 47/359 (13%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  Y      + A  L + I P P +V W N++I   V           F +M R G  
Sbjct: 178 LINMYGKSGDLTSACRLFEAI-PDPNTVSW-NSIIAAQVTNGCAREGIDYFNKMRRLGIE 235

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            DE T   +L+AC  L   +   S+H ++  +GF + + +  AL+  YA+   LS +  +
Sbjct: 236 QDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGV 295

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F E+   G  D V+W  ++A YA  G     + LF  M  +  ++ D V+  + LSAC+ 
Sbjct: 296 FTEV---GFADRVAWTAMLAGYAAHGLGREAIKLFESM-ANKGLEPDHVTFTHLLSACSH 351

Query: 253 LGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            G  + GK    +M E   +  R     V  ++ MV    R G   DA+ + + M  E  
Sbjct: 352 SGLVNEGKSYFNVMSEVYGIEPR-----VDHYSCMVDLLGRCGLLNDAYEVIQNMPMEP- 405

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP----NVVTLVSLLSG------CA 361
             N   W A++   A R HG+  L          +EP    N + L ++ S        A
Sbjct: 406 --NAGVWGALLG--ACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 362 SVGALL---------------LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
            V ALL                G + H + +      D SHP+   + + L ++  K +
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVG-----DRSHPETEKIYSKLEELLGKIR 515


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 311/491 (63%), Gaps = 14/491 (2%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P+ VT+VSL+  CA +G L  GK  H Y+  + L +D    ++L V NA++DMY KC 
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYS--KELGLD----ENLSVNNAILDMYCKCD 60

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            ++ A+ +F+ I  + +DV +WT M+   +++G   ++LALF +M  Q   ++P+  TL 
Sbjct: 61  DIESAQEVFNRI--REKDVLSWTSMLSGLAKSGYFQESLALFRKM--QLHKIEPDEITLV 116

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSGDIDTARVVFDNLK 524
             L ACA+  AL  G+ IH  +L +++E+    V    L+DMY++ G ID A  VF  ++
Sbjct: 117 GVLSACAQTGALDQGKYIH--LLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 174

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
            RNV +W +++ G  MHG G+ A   FDQM  + L PD VTF+ LL ACSH+G+VD+GL 
Sbjct: 175 VRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA 234

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
            F +M  +F I  R EHY C+VDLL RA ++D+A+  IE MP++   ++W  LL  CR  
Sbjct: 235 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 294

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            + +L E    R++ELE +  G Y +LSN+YA   +W    ++R  MK+ G++K PGCSW
Sbjct: 295 GHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 354

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK-AMGYVPQTSFALHDVDDEEKGDLL 763
           ++       F  GDR+H Q+++IY ++  + +R+    G+VP T+  L D+++EEK   L
Sbjct: 355 IELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSL 414

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
           F HSEKLA+A G+++T  G+PIRI KNLR+C DCHS +   S + N EI+ RD +RFHHF
Sbjct: 415 FLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHF 474

Query: 824 KEGSCTCKGYW 834
           KEGSC+C  +W
Sbjct: 475 KEGSCSCMDFW 485



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE T   ++ AC +L +   G  +H+     G D N+ V NA++ MY +CD +  A+++
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F+ + +    D++SW ++++  A+SG  +  L LF +M    K++ D ++LV  LSACA 
Sbjct: 69  FNRIREK---DVLSWTSMLSGLAKSGYFQESLALFRKMQLH-KIEPDEITLVGVLSACAQ 124

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            G   +GK   ++       ++ ++  D+V   A+V  Y++ GS + A  +F++MR  N 
Sbjct: 125 TGALDQGKYIHLL------IDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN- 177

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
              V TW+A+I G A  GHG +A+ +F QM+   L P+ VT ++LL  C+  G +  G  
Sbjct: 178 ---VFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA 234

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
                +K    ++      +     ++D+  + + VD A    + + P   +   W  ++
Sbjct: 235 MF-QAMKNKFQIEPR----MEHYGCVVDLLCRARKVDDALAFIENM-PIKANSVLWATLL 288

Query: 432 GSYSQNG 438
           G+    G
Sbjct: 289 GACRSGG 295



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 163/335 (48%), Gaps = 76/335 (22%)

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------------QCG 263
           MT    ++ D V++V+ + ACA LG   RGK                          +C 
Sbjct: 1   MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCD 60

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
            +E A++VF R++ KDV+SW +M++G ++ G F+++ ALF+KM+   ++ + +T      
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEIT------ 114

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
                                        LV +LS CA  GAL  GK  H    K  ++ 
Sbjct: 115 -----------------------------LVGVLSACAQTGALDQGKYIHLLIDKFEINC 145

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 DL++  AL+DMYAKC S+D+A  +F  +  + R+V TW  MIG  + +G   DA
Sbjct: 146 ------DLVLETALVDMYAKCGSIDLALQVFRRM--RVRNVFTWNAMIGGLAMHGHGEDA 197

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN-- 501
           ++LF QM + DKL+ P+  T    L AC+    +  G  +    ++N+++ + P + +  
Sbjct: 198 ISLFDQM-EXDKLM-PDDVTFIALLCACSHAGLVDEGLAMFQ-AMKNKFQ-IEPRMEHYG 253

Query: 502 CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLM 535
           C++D+  R+  +D A    +N+  + N V W +L+
Sbjct: 254 CVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 288



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 25/291 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           ++  Y   +    A  +  RI      V  W +++    +      +  LF +M      
Sbjct: 52  ILDMYCKCDDIESAQEVFNRIREK--DVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE 109

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDE T   VL AC +  +   G  +H +I     + ++ +  AL+ MYA+C ++  A Q+
Sbjct: 110 PDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 169

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M    + ++ +WN ++   A  G  E  + LF +M  D K+  D V+ +  L AC+ 
Sbjct: 170 FRRM---RVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXD-KLMPDDVTFIALLCACS- 224

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMR 307
                     G+++E   +F+ MK K  +      +  +V    R    +DA A  + M 
Sbjct: 225 --------HAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM- 275

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
              +K N V W+ ++      GH   A  + R++    LEP+      +LS
Sbjct: 276 --PIKANSVLWATLLGACRSGGHFDLAEKIXRRV--IELEPDSCGRYVMLS 322



 Score = 39.7 bits (91), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
           + L PD VT + L+ AC+  G +++G K   S SKE G+         I+D+  + + ++
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERG-KLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 617 EAVELIEGMPMEPTPIIWVALLNG 640
            A E+   +  E   + W ++L+G
Sbjct: 64  SAQEVFNRIR-EKDVLSWTSMLSG 86


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/663 (37%), Positives = 359/663 (54%), Gaps = 66/663 (9%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
           N+L+   +   T   A  L+  M Q G+  D +++  ++ A  +S     GL++   +  
Sbjct: 164 NSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHV-- 221

Query: 233 DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
            VK   +  S +      + +  ++ GK  G    AK++F     +DVVSWNAM+ GY +
Sbjct: 222 -VKSGFECDSYI----VSSLIHLYANGKDLG---AAKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
                 A  +F +M    V  +V++W+ +I GYA  G   EA  +F +M     E N+V+
Sbjct: 274 HVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMP----ERNLVS 325

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
             S+L+G                                         + KC +V+ A  
Sbjct: 326 WNSMLAG-----------------------------------------FVKCGNVEDAFG 344

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  +    RDV +W  M+  Y+Q G  N+ALALF QM      VKP   T+   L ACA
Sbjct: 345 LFSEMP--CRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG--VKPTEATVVSLLSACA 400

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532
            L AL  G  +H Y+  N+ E +   V   L+DMY++ G I  A  VF+ ++ ++V++W 
Sbjct: 401 HLGALDKGLHLHTYINDNRIE-VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWN 459

Query: 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
           +++ G  +HG   +A   F +M++ G+ P+ +TF+ +L ACSH+GMVD+G K  D MS  
Sbjct: 460 TIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS 519

Query: 593 FGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGEL 652
           +GI  + EHY C++DLL RA  L+EA+ELI  MPMEP P    ALL GCRIH N ELGE+
Sbjct: 520 YGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEM 579

Query: 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTA 712
              RL+ L+    G Y LLSNIYA A +W D  ++R+LMK  G+ K PG S ++ K    
Sbjct: 580 VGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVH 639

Query: 713 TFFVGDRTHPQSQKIYEILAGLVQRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
            F  GD +HP+S KIYE L  +  R+K A+GY   T   L D+++E+K   L  HSEKLA
Sbjct: 640 RFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLA 699

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +AYG+L       IRI KNLR+C DCH  I  IS +   EII+RD NRFHHF++G C+C 
Sbjct: 700 IAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCL 759

Query: 832 GYW 834
            +W
Sbjct: 760 DFW 762



 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 164/544 (30%), Positives = 278/544 (51%), Gaps = 69/544 (12%)

Query: 13  SKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSH 72
           S+TP  L +  +N ++ S            L   CK+L  +  +H QII  +  + P   
Sbjct: 84  SRTPNPLTNPPSNPQILS------------LFNPCKTLRHLKQVHAQIITHH--NSPFQL 129

Query: 73  LIAAYVSHNAPSP-----ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
              A +S  +P P     A ++   +   P S++  N+LIR     + P  A  L+  M+
Sbjct: 130 SALASLSALSPFPTFLAYAKTIFHHLQNPPPSLY--NSLIRALSSSKTPLEALPLYHTML 187

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
           + G  PD  T+PFV+KAC E   +  G  VH  +  SGF+ + ++ ++L+ +YA    L 
Sbjct: 188 QSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLG 247

Query: 188 YARQLFDEMFQPGIC---DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            A+QLF+      +C   D+VSWN ++  Y +  +     M  ARM  D  V  D +S  
Sbjct: 248 AAKQLFN------LCSARDVVSWNAMIDGYVKHVE-----MGHARMVFDRMVCRDVISWN 296

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
             ++  A +G          ++EAK++F+ M  +++VSWN+M+ G+ + G+ EDAF LF 
Sbjct: 297 TMINGYAIVGK---------IDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFS 347

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           +M       +VV+W++++A YAQ G  +EAL +F QM+  G++P   T+VSLLS CA +G
Sbjct: 348 EMPCR----DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLG 403

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
           AL  G   H Y     + V+       +V  AL+DMYAKC  + +A  +F+A+  +++DV
Sbjct: 404 ALDKGLHLHTYINDNRIEVNS------IVGTALVDMYAKCGKISLATQVFNAM--ESKDV 455

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI- 483
             W  +I   + +G   +A  LF +M  ++  V+PN  T    L AC+    +  G+++ 
Sbjct: 456 LAWNTIIAGMAIHGNVKEAQQLFKEM--KEAGVEPNDITFVAILSACSHAGMVDEGQKLL 513

Query: 484 ----HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGY 538
                +Y +  + E        C+ID+ +R+G ++ A  +   +  + N  +  +L+ G 
Sbjct: 514 DCMSSSYGIEPKVEHY-----GCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGC 568

Query: 539 GMHG 542
            +HG
Sbjct: 569 RIHG 572



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           A+ +F  +  +N   + +  +I + S +    +AL L+  M Q    +KP+  T    + 
Sbjct: 148 AKTIFHHL--QNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSG--LKPDHMTYPFVIK 203

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC   +   FG  +H +V+++ +E    ++ + LI +Y+   D+  A+ +F+    R+VV
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFE-CDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVV 262

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           SW +++ GY  H     A   FD+M    +  D +++  ++   +  G +D+  + FD M
Sbjct: 263 SWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEM 318

Query: 590 SKEFGIS 596
            +   +S
Sbjct: 319 PERNLVS 325


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 321/547 (58%), Gaps = 16/547 (2%)

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           S  G    A  LF +M+  +        + +I GYA+  + +EA+ ++  M   G+  + 
Sbjct: 56  SHSGDLNYARKLFTQMQNPDP----FICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDN 111

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            T   +L+ CA +GA+ LG+  HC  +K           DL VINALI  Y  C S   A
Sbjct: 112 YTYPFVLAACARLGAVKLGRRFHCEVLKNGFG------SDLFVINALIQFYHNCGSFGCA 165

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
             +FD      RDV TW +MI ++   G +  A  L  +M + D L +P+  T+   + A
Sbjct: 166 CDVFDESTV--RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNL-RPDEVTMVSLVPA 222

Query: 471 CARLAALRFGRQIHAYVLR-NQYEMLIPFV-ANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
           CA+L  L  G+ +H+Y    +++E+    V    L+DMY++ G ID A  VF  ++ RNV
Sbjct: 223 CAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 282

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
            +W +L+ G  MHG G+ A   FDQM  + L PD VTF+ LL ACSH+G+VD+GL  F +
Sbjct: 283 FTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQA 342

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M  +F I  R EHY C+VDLL RA ++D+A+  IE MP++   ++W  LL  CR   + +
Sbjct: 343 MKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFD 402

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           L E    R++ELE +  G Y +LSN+YA   +W    ++R  MK+ G++K PGCSW++  
Sbjct: 403 LAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELN 462

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKA-MGYVPQTSFALHDVDDEEKGDLLFEHS 767
                F  GDR+H Q+++IY ++  + +R+    G+VP T+  L D+++EEK   LF HS
Sbjct: 463 GMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHS 522

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           EKLA+A G+++T  G+PIRI KNLR+C DCHS +   S + N EI+ RD +RFHHFKEGS
Sbjct: 523 EKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGS 582

Query: 828 CTCKGYW 834
           C+C  +W
Sbjct: 583 CSCMDFW 589



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 209/418 (50%), Gaps = 28/418 (6%)

Query: 33  TTPCIKITSL--LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAY-VSHNAP-SPA 86
           ++ C K+ S+  L   C S+++    H  ++  +L H P   S LI+   +SH+   + A
Sbjct: 5   SSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYA 64

Query: 87  LSLLQRI-SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
             L  ++ +P PF     N +IR   R + P  A  L+  M+ RG   D YT+PFVL AC
Sbjct: 65  RKLFTQMQNPDPFIC---NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
             L + + G   H  +  +GF S++FV NAL+  Y  C +   A  +FDE     + D+V
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDE---STVRDVV 178

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           +WN ++ A+   G +E    L   MT    ++ D V++V+ + ACA LG   RGK    +
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGK---FL 235

Query: 266 EEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
               K  ++ ++  D+V   A+V  Y++ GS + A  +F++MR      NV TW+A+I G
Sbjct: 236 HSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR----NVFTWNALIGG 291

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            A  GHG +A+ +F QM+   L P+ VT ++LL  C+  G +  G       +K    ++
Sbjct: 292 LAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF-QAMKNKFQIE 350

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                 +     ++D+  + + VD A    + + P   +   W  ++G+  ++GG  D
Sbjct: 351 PR----MEHYGCVVDLLCRARKVDDALAFIENM-PIKANSVLWATLLGA-CRSGGHFD 402


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 309/523 (59%), Gaps = 17/523 (3%)

Query: 318 WSAVIAGYAQRGHGH-EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++ +I  +AQ  H    AL  +  M+   + PN  T   +L  CA +  L LG   H   
Sbjct: 194 FNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASM 253

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKC----KSVDV-ARVMFDAIAPKNRDVATWTVMI 431
           +K          +D  V N L+ MY  C     S  V A+ +FD    K  D  TW+ MI
Sbjct: 254 VKFGFE------EDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVK--DSVTWSAMI 305

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
           G Y++ G +  A+ LF +M  Q   V P+  T+   L ACA L AL  G+ + +Y+ R  
Sbjct: 306 GGYARAGNSARAVTLFREM--QVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKN 363

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
               +  + N LIDM+++ GD+D A  VF  +K R +VSWTS++ G  MHG G +A   F
Sbjct: 364 IMRSVE-LCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVF 422

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
           D+M ++G+ PD V F+ +L ACSHSG+VD+G  YF++M   F I  + EHY C+VD+L R
Sbjct: 423 DEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSR 482

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
           A R++EA+E +  MP+EP  +IW +++  C     ++LGE  A  L+  E   + +Y LL
Sbjct: 483 AGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLL 542

Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
           SNIYA   RW+   ++R +M   G++K PG + ++       F  GD++H Q ++IYE++
Sbjct: 543 SNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMV 602

Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
             + + IK  GYVP TS  L D+D+E+K D L+ HSEKLA+A+ +L+T PGTPIRI KNL
Sbjct: 603 EEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNL 662

Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           R+C DCHSA  FIS + N EI++RD NRFHHFK G C+C  +W
Sbjct: 663 RVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 203/450 (45%), Gaps = 72/450 (16%)

Query: 56  IHQQIIVQNLTHVPPS-HLIAAYVSH-NAPSPALSLL----QRISPSPFSVFWWNALIRR 109
           IH  I+   L H P      AA  SH NA   A S+L    Q   P     F +N LIR 
Sbjct: 141 IHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRA 200

Query: 110 -AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
            A       +A R +  M R    P+++TFPFVLKAC  +     G +VHA +   GF+ 
Sbjct: 201 FAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEE 260

Query: 169 NVFVCNALMAMYARC--DTLS---YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
           +  V N L+ MY  C  D  S    A+++FDE     + D V+W+ ++  YA++G++   
Sbjct: 261 DPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDE---SPVKDSVTWSAMIGGYARAGNSARA 317

Query: 224 LMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
           + LF  M  TG   V  D +++V+ LSACA LG    GK      E K +     ++ V 
Sbjct: 318 VTLFREMQVTG---VCPDEITMVSVLSACADLGALELGKWLESYIERKNI-----MRSVE 369

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA++  +++ G  + A  +F++M+       +V+W+++I G A  G G EA+ VF +M
Sbjct: 370 LCNALIDMFAKCGDVDRAVKVFREMKVR----TIVSWTSMIVGLAMHGRGLEAVLVFDEM 425

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G++P+ V  + +LS C+  G +  G   H Y                   N + +M+
Sbjct: 426 MEQGVDPDDVAFIGVLSACSHSGLVDKG---HYY------------------FNTMENMF 464

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
                         +I PK   +  +  M+   S+ G  N+AL     M      V+PN 
Sbjct: 465 --------------SIVPK---IEHYGCMVDMLSRAGRVNEALEFVRAM-----PVEPNQ 502

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQ 491
                 + AC     L+ G  +   ++R +
Sbjct: 503 VIWRSIVTACHARGELKLGESVAKELIRRE 532



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 199/430 (46%), Gaps = 37/430 (8%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF---DEMFQPGICDIVSWNTIVAA 213
           +H++I   G   N  V     A  +  + + YA  +    D+   P   D   +NT++ A
Sbjct: 141 IHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRA 200

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
           +AQ+  ++   + F        V  +  +    L ACA +     G         K  FE
Sbjct: 201 FAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHA-SMVKFGFE 259

Query: 274 RMKVKDVVSWNAMVTGYS---RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
               +D    N +V  Y    + GS     A  KK+  E+   + VTWSA+I GYA+ G+
Sbjct: 260 ----EDPHVRNTLVHMYCCCCQDGSSGPVSA--KKVFDESPVKDSVTWSAMIGGYARAGN 313

Query: 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
              A+ +FR+MQ  G+ P+ +T+VS+LS CA +GAL LGK    Y  ++ +         
Sbjct: 314 SARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIM------RS 367

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           + + NALIDM+AKC  VD A  +F  +  K R + +WT MI   + +G   +A+ +F +M
Sbjct: 368 VELCNALIDMFAKCGDVDRAVKVFREM--KVRTIVSWTSMIVGLAMHGRGLEAVLVFDEM 425

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY--VLRNQYEMLIPFVAN--CLIDM 506
            +Q   V P+       L AC+    +  G   H Y   + N +  ++P + +  C++DM
Sbjct: 426 MEQG--VDPDDVAFIGVLSACSHSGLVDKG---HYYFNTMENMFS-IVPKIEHYGCMVDM 479

Query: 507 YSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPD 562
            SR+G ++ A      +  + N V W S++T     G   LG+    A + +R+E     
Sbjct: 480 LSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESV--AKELIRREPSHES 537

Query: 563 GVTFLVLLYA 572
               L  +YA
Sbjct: 538 NYVLLSNIYA 547


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 337/573 (58%), Gaps = 17/573 (2%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ A  +F+RM  ++++S N M+  Y  +G+ E A  LF +M   NV     TW+A++
Sbjct: 118 GELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNV----ATWNAMV 173

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
            G  +     EAL +F +M      P+  +L S+L GCA +GALL G++ H Y +K    
Sbjct: 174 TGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFE 233

Query: 383 VDGSHPDDLMVINALIDMYAKCKSV-DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
            +      L+V  +L  MY K  S+ D  RV+     P    VA W  ++   +Q G   
Sbjct: 234 CN------LVVGCSLAHMYMKAGSMHDGERVI--NWMPDCSLVA-WNTLMSGKAQKGYFE 284

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
             L  +  M       +P+  T    + +C+ LA L  G+QIHA  ++      +  V++
Sbjct: 285 GVLDQYCMMKMAG--FRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSS 342

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L+ MYSR G +  +   F   K+R+VV W+S++  YG HG G++A   F++M +E L  
Sbjct: 343 -LVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPG 401

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + +TFL LLYACSH G+ D+GL  FD M K++G+ AR +HY C+VDLLGR+  L+EA  +
Sbjct: 402 NEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAM 461

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           I  MP++   IIW  LL+ C+IH N E+    A+ +L ++ +   SY LL+NIY++A RW
Sbjct: 462 IRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRW 521

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
           ++V+ +R  MK   VKK PG SWV+ K     F +GD  HP+  +I + L  L   IK  
Sbjct: 522 QNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQ 581

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GYVP TS  LHD+D+EEK  +L  HSEKLA+A+ ++ T  G PIR+ KNLR+C DCH AI
Sbjct: 582 GYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAI 641

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            +IS I   EII+RDS+RFHHFK G+C+C  YW
Sbjct: 642 KYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 211/474 (44%), Gaps = 75/474 (15%)

Query: 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197
           F  +L+AC  L S   G  +H++I +SG  S+ F+ N L+ +Y++   L  A  LFD M 
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 198 QPGI--CDIV--------------------------SWNTIVAAYAQSGDAEGGLMLFAR 229
           +  I  C+I+                          +WN +V    +    E  L+LF+R
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVS 282
           M  ++    D  SL + L  CA LG    G+Q       CG        FE     ++V 
Sbjct: 192 MN-ELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCG--------FE----CNLVV 238

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             ++   Y + GS  D   +   M       ++V W+ +++G AQ+G+    LD +  M+
Sbjct: 239 GCSLAHMYMKAGSMHDGERVINWMPD----CSLVAWNTLMSGKAQKGYFEGVLDQYCMMK 294

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G  P+ +T VS++S C+ +  L  GK+ H   +K           ++ V+++L+ MY+
Sbjct: 295 MAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVK------AGASSEVSVVSSLVSMYS 348

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  +  +   F  +  K RDV  W+ MI +Y  +G   +A+ LF +M Q++  +  N  
Sbjct: 349 RCGCLQDSIKTF--LECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQEN--LPGNEI 404

Query: 463 TLSCALMACARLAALR-----FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           T    L AC+           F   +  Y L+ + +        CL+D+  RSG ++ A 
Sbjct: 405 TFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHY-----TCLVDLLGRSGCLEEAE 459

Query: 518 VVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            +  ++  + + + W +L++   +H   + A    D++ +  + P      VLL
Sbjct: 460 AMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLR--IDPQDSASYVLL 511



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 190/421 (45%), Gaps = 59/421 (14%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I AY+       A +L   +     +V  WNA++    +  + + A  LF +M    + 
Sbjct: 141 MIKAYLGMGNLESAKNLFDEMPDR--NVATWNAMVTGLTKFEMNEEALLLFSRMNELSFM 198

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDEY+   VL+ C  L +   G  VHA +   GF+ N+ V  +L  MY +  ++    ++
Sbjct: 199 PDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERV 258

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA--RMTGDVKVQGDGVSLVNALSAC 250
            + M  P  C +V+WNT+++  AQ G  EG L  +   +M G    + D ++ V+ +S+C
Sbjct: 259 INWM--PD-CSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAG---FRPDKITFVSVISSC 312

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           + L    +GKQ                          CG ++++ K F   K +DVV W+
Sbjct: 313 SELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWS 372

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QF 343
           +M+  Y   G  E+A  LF +M QEN+  N +T+ +++   +  G   + L +F  M + 
Sbjct: 373 SMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKK 432

Query: 344 CGLEPNV---VTLVSLL--SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            GL+  +     LV LL  SGC      ++          R + V      D ++   L+
Sbjct: 433 YGLKARLQHYTCLVDLLGRSGCLEEAEAMI----------RSMPVKA----DAIIWKTLL 478

Query: 399 DMYAKCKSVDVARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
                 K+ ++AR + D +   + +D A++ ++   YS      +   +   M  +DK+V
Sbjct: 479 SACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAM--KDKMV 536

Query: 458 K 458
           K
Sbjct: 537 K 537



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 49/276 (17%)

Query: 409 VARVMFDA-IAPKNRDVATWTVMIGSYSQNGGANDALALFPQM------------FQQDK 455
           V+R  F   I  +N      T+   ++ QNG  +D    F  +            F  + 
Sbjct: 6   VSRTRFSVPIVFQNSIFRFSTISFKTHFQNGRFSDGNEQFATLCSKGHIREAFESFLSEI 65

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR------ 509
             +P  F  S  L AC  L ++  G+Q+H+ +  +       F++N L+++YS+      
Sbjct: 66  WAEPRLF--SNLLQACIPLKSVSLGKQLHSLIFTSGCSS-DKFISNHLLNLYSKFGELQA 122

Query: 510 -------------------------SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
                                     G++++A+ +FD +  RNV +W +++TG     + 
Sbjct: 123 AVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMN 182

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
           ++A   F +M +    PD  +   +L  C+H G +  G +    + K  G          
Sbjct: 183 EEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMK-CGFECNLVVGCS 241

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +  +  +A  + +   +I  MP + + + W  L++G
Sbjct: 242 LAHMYMKAGSMHDGERVINWMP-DCSLVAWNTLMSG 276


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 340/561 (60%), Gaps = 18/561 (3%)

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            D  + N ++  Y R+ + + A  LF +M   NV    V+W++++AGY  +G  + AL +
Sbjct: 57  NDTFATNHLINCYLRLFTIDHAQKLFDEMPHRNV----VSWTSLMAGYVSQGQPNMALCL 112

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F QMQ   + PN  T  +L++ C+ +  L +G+  H      ++ V G    +L+  ++L
Sbjct: 113 FHQMQGTLVLPNEFTFATLINACSILANLEIGRRIHA-----LVEVSGL-GSNLVACSSL 166

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMY KC  VD AR++FD++  +N  V +WT MI +YSQN   + AL LF + F   +L 
Sbjct: 167 IDMYGKCNHVDEARLIFDSMCTRN--VVSWTSMITTYSQNAQGHHALQLFKE-FNHSRLD 223

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           KPN F L  A+ ACA L +L  G+  H  V+R  +E     +A+ L+DMY++ G ++ + 
Sbjct: 224 KPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEA-SDVIASALVDMYAKCGCVNYSA 282

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +F  ++  +V+ +TS++ G   +GLG  +   F +M    + P+ +TF+ +L+ACSHSG
Sbjct: 283 KIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACSHSG 342

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT--PIIWV 635
           +VD+GL+  DSM  ++G++  A+HY CI D+LGR  R++EA +L + + +E     ++W 
Sbjct: 343 LVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGDGYAMLWG 402

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            LL+  R++  V++   A+NRL+E   +  G+Y  LSN YA AG W++   +RS MKHTG
Sbjct: 403 TLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDWENAHNLRSEMKHTG 462

Query: 696 VKKRPGCSWVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTS-FALHD 753
           V K PG SW++ KE T  F  GD   + Q ++I  +L  L +R+K  GYV  T      D
Sbjct: 463 VYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMKGRGYVGGTKGLVFVD 522

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           V++E K +++  HSEKLALA+G++ T  G  IRI KNLR+C DCH A   IS I+  E++
Sbjct: 523 VEEEAKEEIVSMHSEKLALAFGLINTPKGVTIRIMKNLRMCRDCHGAFKLISDIVERELV 582

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD NRFHHFK G CTC  +W
Sbjct: 583 VRDVNRFHHFKNGLCTCGDFW 603



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 208/457 (45%), Gaps = 36/457 (7%)

Query: 16  PLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHL 73
            L+L H  TN K   V            L+ CK LT     H  ++   L++     +HL
Sbjct: 16  KLSLFHFHTNTKAHFVAK----------LQTCKDLTSATSTHSNVVKSGLSNDTFATNHL 65

Query: 74  IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
           I  Y+       A  L   +     +V  W +L+   V    P+ A  LF QM      P
Sbjct: 66  INCYLRLFTIDHAQKLFDEMPHR--NVVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVLP 123

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +E+TF  ++ AC  L +   G  +HA++  SG  SN+  C++L+ MY +C+ +  AR +F
Sbjct: 124 NEFTFATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSLIDMYGKCNHVDEARLIF 183

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           D M      ++VSW +++  Y+Q+      L LF         + +   L +A+SACASL
Sbjct: 184 DSMCTR---NVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSACASL 240

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
           G+   GK    +     +    +  DV++ +A+V  Y++ G    +  +F++++      
Sbjct: 241 GSLGSGK----ITHGVVIRLGHEASDVIA-SALVDMYAKCGCVNYSAKIFRRIQNP---- 291

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           +V+ ++++I G A+ G G  +L +F++M    ++PN +T V +L  C+  G +  G E  
Sbjct: 292 SVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACSHSGLVDKGLEL- 350

Query: 374 CYTIKRVLSVDGSH--PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT-WTVM 430
                 + S+DG +    D      + DM  +   ++ A  +  ++  +    A  W  +
Sbjct: 351 ------LDSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGDGYAMLWGTL 404

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + +    G  + AL    ++ + ++ V     TLS A
Sbjct: 405 LSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNA 441


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/551 (39%), Positives = 314/551 (56%), Gaps = 39/551 (7%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N+  ++A+I G +   +   +   + +    GL P+ +T   L+  CA +    +G +TH
Sbjct: 81  NLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTH 140

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              IK           D  V N+L+ MYA    ++ AR +F  +     DV +WT MI  
Sbjct: 141 GQAIKHGFE------QDFYVQNSLVHMYASVGDINAARSVFQRMC--RFDVVSWTCMIAG 192

Query: 434 YSQNGGANDALALFPQMFQ-----------------------------QDKLVKPNAFTL 464
           Y + G A  A  LF +M +                             Q + V  N   +
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
              + +CA L AL  G + H YV+RN+  + +  +   ++DMY+R G+++ A +VF+ L 
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNL-ILGTAVVDMYARCGNVEKAVMVFEQLP 311

Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +++V+ WT+L+ G  MHG  +KA W F +M K+G  P  +TF  +L ACSH+GMV++GL+
Sbjct: 312 EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLE 371

Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
            F+SM ++ G+  R EHY C+VDLLGRA +L +A + +  MP++P   IW ALL  CRIH
Sbjct: 372 IFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIH 431

Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
            NVE+GE     LLE++ E  G Y LLSNIYA A +WKDV  +R +MK  GV+K PG S 
Sbjct: 432 KNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSL 491

Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLV-QRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           ++       F +GD+THP+ +KI  I   ++  +IK  GYV  T+  + D+D+EEK   L
Sbjct: 492 IEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGAL 551

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+AYGI+     TPIRI KNLR+C DCH+A   IS +   E+I+RD NRFHHF
Sbjct: 552 HRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHF 611

Query: 824 KEGSCTCKGYW 834
           KEG+C+C  YW
Sbjct: 612 KEGTCSCMDYW 622



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 181/365 (49%), Gaps = 50/365 (13%)

Query: 42  LLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYV--SHNAPSPALSLLQRISPSP 97
           +LL  C +   + +IH  ++  +L       S LIA  +  + N    A+ +  +I  +P
Sbjct: 22  VLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQ-NP 80

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            ++F +NALIR       P+N+F  +++ +R G  PD  T PF++KAC +L ++  G   
Sbjct: 81  -NLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQT 139

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H      GF+ + +V N+L+ MYA    ++ AR +F  M +    D+VSW  ++A Y + 
Sbjct: 140 HGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCR---FDVVSWTCMIAGYHRC 196

Query: 218 GDAEGGLMLFARM------------TGDVK-------------VQGDGV-----SLVNAL 247
           GDA+    LF RM            +G  +             +Q +GV      +V  +
Sbjct: 197 GDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVI 256

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           S+CA LG  + G      E+A +   R K+  +++   A+V  Y+R G+ E A  +F+++
Sbjct: 257 SSCAHLGALAMG------EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQL 310

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
            ++    +V+ W+A+IAG A  G+  +AL  F +M   G  P  +T  ++L+ C+  G +
Sbjct: 311 PEK----DVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMV 366

Query: 367 LLGKE 371
             G E
Sbjct: 367 ERGLE 371


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 329/556 (59%), Gaps = 15/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV +  ++++ YS  G   DA  LF ++   +V    VTW+A+ +GY   G   EA+D+F
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSV----VTWTALFSGYTTSGRHREAIDLF 200

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           ++M   G++P+   +V +LS C  VG L  G+    + +K +  ++     +  V   L+
Sbjct: 201 KKMVEMGVKPDSYFIVQVLSACVHVGDLDSGE----WIVKYMEEME--MQKNSFVRTTLV 254

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           ++YAKC  ++ AR +FD++  K  D+ TW+ MI  Y+ N    + + LF QM Q++  +K
Sbjct: 255 NLYAKCGKMEKARSVFDSMVEK--DIVTWSTMIQGYASNSFPKEGIELFLQMLQEN--LK 310

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           P+ F++   L +CA L AL  G    + + R+++ +   F+AN LIDMY++ G +     
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMARGFE 369

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF  +K++++V   + ++G   +G    +   F Q  K G++PDG TFL LL  C H+G+
Sbjct: 370 VFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGL 429

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +  GL++F+++S  + +    EHY C+VDL GRA  LD+A  LI  MPM P  I+W ALL
Sbjct: 430 IQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALL 489

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
           +GCR+  + +L E     L+ LE    G+Y  LSNIY+  GRW + A +R +M   G+KK
Sbjct: 490 SGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKK 549

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
            PG SW++ +     F   D++HP S KIY  L  L   ++ MG+VP T F   DV++EE
Sbjct: 550 IPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEE 609

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K  +L  HSEKLA+A G+++T  G  IR+ KNLR+CGDCH  +  IS I   EI++RD+N
Sbjct: 610 KERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNN 669

Query: 819 RFHHFKEGSCTCKGYW 834
           RFH F  GSC+C  YW
Sbjct: 670 RFHCFTNGSCSCNDYW 685



 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 214/474 (45%), Gaps = 92/474 (19%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F +N+LI   V   L      LFL + + G +   +TFP VLKAC    S + G  +H
Sbjct: 75  NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLH 134

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           +++   GF+ +V    +L+++Y+    L+ A +LFDE+       +V+W  + + Y  SG
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS---VVTWTALFSGYTTSG 191

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
                + LF +M  ++ V+ D   +V  LSAC  +G    G+                  
Sbjct: 192 RHREAIDLFKKMV-EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR 250

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG ME+A+ VF+ M  KD+V+W+ M+ GY+     ++   LF +M QEN+K
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
                                              P+  ++V  LS CAS+GAL LG+  
Sbjct: 311 -----------------------------------PDQFSIVGFLSSCASLGALDLGEWG 335

Query: 373 HCYTIKRVLSVDGSHP--DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
                   +S+   H    +L + NALIDMYAKC ++     +F  +  K +D+      
Sbjct: 336 --------ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM--KEKDIVIMNAA 385

Query: 431 IGSYSQNGGANDALALFPQMFQQDKL-VKPNAFTLSCALMACARLA----ALRFGRQIH- 484
           I   ++NG    + A+F    Q +KL + P+  T    L  C         LRF   I  
Sbjct: 386 ISGLAKNGHVKLSFAVFG---QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTG 537
            Y L+   E        C++D++ R+G +D A R++ D   + N + W +L++G
Sbjct: 443 VYALKRTVEHY-----GCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG 491



 Score = 43.5 bits (101), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           +QIH  ++ N +     F+ N L+           + ++F + +  N+  + SL+ G+  
Sbjct: 30  KQIHVSLI-NHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVN 88

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           + L  +    F  +RK GL   G TF ++L AC+ +     G+    S+  + G +    
Sbjct: 89  NHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID-LHSLVVKCGFNHDVA 147

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
               ++ +   + RL++A +L + +P + + + W AL +G
Sbjct: 148 AMTSLLSIYSGSGRLNDAHKLFDEIP-DRSVVTWTALFSG 186


>gi|79506598|ref|NP_196000.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170265|sp|Q9FFN1.1|PP363_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g03800; AltName: Full=Protein EMBRYO DEFECTIVE 175
 gi|9758009|dbj|BAB08606.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|26449508|dbj|BAC41880.1| unknown protein [Arabidopsis thaliana]
 gi|58013014|gb|AAW62960.1| embryo-defective 175 [Arabidopsis thaliana]
 gi|58013016|gb|AAW62961.1| embryo-defective 175 [Arabidopsis thaliana]
 gi|332003273|gb|AED90656.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 896

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 261/801 (32%), Positives = 412/801 (51%), Gaps = 63/801 (7%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW- 131
           LI+ Y+    P  A+  L  +S S  +V  + ALI    RL L   A ++F +M + G  
Sbjct: 120 LISTYLKLGFPREAI--LVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLV 177

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR-----CDTL 186
            P+EYTF  +L AC  +     G  +H +I  SGF ++VFV N+LM++Y +     CD +
Sbjct: 178 QPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDV 237

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV---SL 243
               +LFDE+ Q    D+ SWNT+V++  + G +     LF  M    +V+G GV   +L
Sbjct: 238 ---LKLFDEIPQR---DVASWNTVVSSLVKEGKSHKAFDLFYEMN---RVEGFGVDSFTL 288

Query: 244 VNALSACASLGTWSRGKQ-------CGMMEE----------------AKKV---FERMKV 277
              LS+C       RG++        G+M+E                 KKV   +E M  
Sbjct: 289 STLLSSCTDSSVLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMA 348

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +D V++  M+T Y   G  + A  +F  + ++N     +T++A++AG+ + GHG +AL +
Sbjct: 349 QDAVTFTEMITAYMSFGMVDSAVEIFANVTEKNT----ITYNALMAGFCRNGHGLKALKL 404

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F  M   G+E    +L S +  C  V    + ++ H + IK   + +        +  AL
Sbjct: 405 FTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPC------IQTAL 458

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTV-MIGSYSQNGGANDALALFPQMFQQDKL 456
           +DM  +C+ +  A  MFD   P N D +  T  +IG Y++NG  + A++LF +   + KL
Sbjct: 459 LDMCTRCERMADAEEMFDQ-WPSNLDSSKATTSIIGGYARNGLPDKAVSLFHRTLCEQKL 517

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
              +  +L+  L  C  L     G QIH Y L+  Y   I  + N LI MY++  D D A
Sbjct: 518 F-LDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDIS-LGNSLISMYAKCCDSDDA 575

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC--S 574
             +F+ +++ +V+SW SL++ Y +   GD+A   + +M ++ + PD +T  +++ A   +
Sbjct: 576 IKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFRYT 635

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            S  +      F SM   + I    EHY   V +LG    L+EA + I  MP++P   + 
Sbjct: 636 ESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVL 695

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ CRIH+N  + +  A  +L  + E    Y L SNIY+ +G W     IR  M+  
Sbjct: 696 RALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRER 755

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G +K P  SW+  +    +F   D +HPQ + IY  L  L+     +GY P T + L +V
Sbjct: 756 GYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEV 815

Query: 755 DDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           D+  K   LF HS KLA+ YGIL++   G P+R+ KN+ +CGDCH    +IS+++  EI+
Sbjct: 816 DEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIV 875

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRDS+ FHHF  G C+C+  W
Sbjct: 876 LRDSSGFHHFVNGKCSCRDLW 896



 Score = 48.1 bits (113), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           + +HA  L+ + E     + N LI  Y + G    A +VF +L    VVS+T+L++G+  
Sbjct: 100 KAVHASFLKLREEK--TRLGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSR 157

Query: 541 HGLGDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLK 584
             L  +A   F +MRK GL  P+  TF+ +L AC        G++
Sbjct: 158 LNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGIQ 202


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 261/737 (35%), Positives = 399/737 (54%), Gaps = 45/737 (6%)

Query: 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169
           A++LR  D     FL M RR    D      +L+A     S R G  +HA +   GF S+
Sbjct: 183 AIQLRAID--LLGFLPMERRRMIAD------LLRASARGSSLRGGVQLHAALMKLGFGSD 234

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
             + N L+ MYA+C  L  A ++FD M +    ++VSW  ++  +   G+A   L LF  
Sbjct: 235 TMLNNNLIDMYAKCGKLHMAGEVFDGMPER---NVVSWTALMVGFLHHGEARECLRLFGE 291

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
           M      +G G S  N  +  A+L     G + G+      V    +  DVV+ N++V  
Sbjct: 292 M------RGSGTS-PNEFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVVA-NSLVVM 343

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE-P 348
           YS+     DA  +F  +   N+     TW+++I+GYA  G G ++L VFR+MQ    E P
Sbjct: 344 YSKGRWTGDARRVFDVIPSRNL----ATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQP 399

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDMYAKCKSV 407
           +  T  SLL  C+ +GA   G + H       ++V G  P  + ++  AL+D+Y KC  +
Sbjct: 400 DEFTFASLLKACSGLGAAREGAQVHA-----AMAVRGVSPASNAILAGALLDVYVKCHRL 454

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
            VA  +FD +  + R+   WT +I  ++Q G   +A+ LF + +     V+ +   LS  
Sbjct: 455 PVAMQVFDGL--ERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG--VRADGHVLSSV 510

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           +   A  A +  G+Q+H Y  +    + +  VAN L+DMY + G    A   F  +  RN
Sbjct: 511 VAVFADFALVEQGKQVHCYTAKTPAGLDVS-VANSLVDMYLKCGLTGEAGRRFREMPARN 569

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           VVSWT+++ G G HG G +A   F++M+ EG+  D V +L LL ACSHSG+VD+  +YF 
Sbjct: 570 VVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFS 629

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            + ++  +  +AEHYAC+VDLLGRA  L EA ELI  MPMEPT  +W  LL+ CR+H +V
Sbjct: 630 RICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDV 689

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
            +G    + LL ++ +   +Y +LSNI A AG W++   IR  M+  G++K+ GCSW + 
Sbjct: 690 AVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEV 749

Query: 708 KEGTATFF-VGDRTHPQSQKIYEILAGLVQRIKA-MGYVPQTSFALHDVDDEEKGDLLFE 765
            +    F+  GD  HPQ+  I   L  +  R++  +GY      ALHDVD+E + + L E
Sbjct: 750 DKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDEESRVESLRE 809

Query: 766 HSEKLALAYGILTTAPGTP--------IRITKNLRICGDCHSAITFISMIINHEIILRDS 817
           HSE+LA+   +L    G          +R+ KNLR+CGDCH  +  +S ++   +++RD+
Sbjct: 810 HSERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDA 869

Query: 818 NRFHHFKEGSCTCKGYW 834
           NRFH F+ G+C+C+ YW
Sbjct: 870 NRFHRFQNGACSCRDYW 886



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 205/444 (46%), Gaps = 23/444 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   +         RLF +M   G  P+E+T    LKACG    +R G  +H
Sbjct: 265 NVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIH 322

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V   +GF+ +  V N+L+ MY++      AR++FD +      ++ +WN++++ YA +G
Sbjct: 323 GVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSR---NLATWNSMISGYAHAG 379

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L++F  M      Q D  +  + L AC+ LG    G Q   +  A  V       
Sbjct: 380 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQ---VHAAMAVRGVSPAS 436

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           + +   A++  Y +      A  +F  + +     N + W+ VI G+AQ G   EA+ +F
Sbjct: 437 NAILAGALLDVYVKCHRLPVAMQVFDGLERR----NAIQWTTVIVGHAQEGQVKEAMCLF 492

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R+    G+  +   L S+++  A    +  GK+ HCYT K    +D S      V N+L+
Sbjct: 493 RRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVS------VANSLV 546

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           DMY KC     A   F  +  +N  V +WT MI    ++G   +A+ LF +M  Q + V+
Sbjct: 547 DMYLKCGLTGEAGRRFREMPARN--VVSWTAMINGVGKHGHGREAIDLFEEM--QAEGVE 602

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            +       L AC+    +   R+  + + +++          C++D+  R+G++  A+ 
Sbjct: 603 ADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKE 662

Query: 519 VFDNLKQRNVVS-WTSLMTGYGMH 541
           +  ++     V  W +L++   +H
Sbjct: 663 LILSMPMEPTVGVWQTLLSACRVH 686


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/567 (40%), Positives = 320/567 (56%), Gaps = 35/567 (6%)

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE-PNVVT 352
           GS   A  LF ++R    K ++   + +I  YA   +  +A+  + +M    +  P+V T
Sbjct: 83  GSIPYARFLFYRIR----KPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHT 138

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI------------------ 394
              LL  C+ + +L LG+  H +  K   S + S  + L+ +                  
Sbjct: 139 FPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTP 198

Query: 395 -------NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
                  N +I  Y KC     AR MF+A+   +RDV +W+VMI  Y Q     + L LF
Sbjct: 199 ECDGASWNIMIGGYLKCGVFKSARRMFEAMP--DRDVVSWSVMINGYVQESRFKEGLGLF 256

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
             M  +   ++PN   L  AL ACA L A+  G+ I  Y+ R    + +  +   LIDMY
Sbjct: 257 QDMMGEK--IEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVR-LGTALIDMY 313

Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
           S+ G ++ A  VF  +K++NV++W++++ G  ++G G  A   F QM  +G+ P+ VTF+
Sbjct: 314 SKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFI 373

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            +L ACSHS +VD+G  +F SM+  +G+   A H+ C+VDL GRA  LD+A  +I+ MP 
Sbjct: 374 GILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPF 433

Query: 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
           +P   IW ALLN CRIH + ELGE    RLLEL+    G Y LLSNIYA  GRW  VA +
Sbjct: 434 KPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAEL 493

Query: 688 RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
           R +M+   V K PGCS++   +    F  GD +HPQ + IY  L  + Q +KA GY P T
Sbjct: 494 RRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDT 553

Query: 748 SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
              L D+D+EEK   L  HSEKLA+A+G++ T PGT IRITKNLR+C DCHSA   IS I
Sbjct: 554 GQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKI 613

Query: 808 INHEIILRDSNRFHHFKEGSCTCKGYW 834
            N EII+RD  RFHHF++GSC+C  +W
Sbjct: 614 YNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 149/538 (27%), Positives = 237/538 (44%), Gaps = 80/538 (14%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNL--THVPPSHLI--AAYVSHNAPSPALSLLQRISPSPFS 99
           L  CK+L  +  IH Q I   +   +   S ++  AA   H +   A  L  RI      
Sbjct: 42  LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP--D 99

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVH 158
           +F  N LIR       P +A   + +M       PD +TFP +LKAC E+PS R G ++H
Sbjct: 100 IFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIH 159

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD------------------------ 194
           + +   G+ S V V N L+ MYA C  +  A  +FD                        
Sbjct: 160 SHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFK 219

Query: 195 ---EMFQ--PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
               MF+  P   D+VSW+ ++  Y Q    + GL LF  M G+ K++ +   LVNALSA
Sbjct: 220 SARRMFEAMPDR-DVVSWSVMINGYVQESRFKEGLGLFQDMMGE-KIEPNESVLVNALSA 277

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW-NAMVTGYSRIGSFEDAFALFKKMRQ 308
           CA LG   +G+        ++  ER  V+  V    A++  YS+ GS E A  +F KM++
Sbjct: 278 CAHLGAMEQGQW------IERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKE 331

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           +    NV+ WSA+I G A  G G +AL++F QM+  G++PN VT + +L+ C+    +  
Sbjct: 332 K----NVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDE 387

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           G    C     + S+ G  P+       ++D+Y +   +D A+ +  ++ P   + A W 
Sbjct: 388 G----CSFFHSMTSIYGLKPNAHHHC-CMVDLYGRAGMLDQAQTVIKSM-PFKPNSAIWG 441

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA---RLAALR------- 478
            ++ +   +G       +  ++ + D         LS    AC    R+A LR       
Sbjct: 442 ALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQ 501

Query: 479 -----------FGRQIHAYVLRN----QYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
                       G  IH +V  +    Q EM+   +     ++ +     DT +V+ D
Sbjct: 502 VSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLD 559


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 388/700 (55%), Gaps = 40/700 (5%)

Query: 55  LIHQQII---VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAV 111
           LIHQ+I+   +QN   +  S LI  Y S +    A  + Q I  +P  +  WN L+    
Sbjct: 216 LIHQKIVSLGLQNNITLCKS-LINLYFSCHLFQSAKLVFQTIE-NPLDITLWNGLMAACT 273

Query: 112 RLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170
           +  +      +F +++   +  PD +T+P VLKAC  L     G  VH  +  SGF  +V
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
            V ++ + MYA+C+    A +LFDEM +    D+ SWN +++ Y Q G  E  L LF  M
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPER---DVASWNNVISCYYQDGQPEKALELFEEM 390

Query: 231 TGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
               KV G   D V+L   +S+CA L    RGK+  M E  +  F      D    +A+V
Sbjct: 391 ----KVSGFKPDSVTLTTVISSCARLLDLERGKEIHM-ELVRSGF----ALDGFVSSALV 441

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
             Y + G  E A  +F++++++NV    V+W+++IAGY+ +G     +++FR+M   G+ 
Sbjct: 442 DMYGKCGCLEMAKEVFEQIQRKNV----VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIR 497

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P + TL S+L  C+    L LGK  H Y I+  +  D      + V ++LID+Y KC ++
Sbjct: 498 PTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD------IFVNSSLIDLYFKCGNI 551

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
             A  +F  +   N  V +W VMI  Y + G   +AL +F  M +    VKP+A T +  
Sbjct: 552 GSAENVFQNMPKTN--VVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VKPDAITFTSV 607

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L AC++LA L  G++IH +++ ++ E +   V   L+DMY++ G +D A  +F+ L +R+
Sbjct: 608 LPACSQLAVLEKGKEIHNFIIESKLE-INEVVMGALLDMYAKCGAVDEALHIFNQLPERD 666

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
            VSWTS++  YG HG   +A   F++M++    PD VTFL +L ACSH+G+VD+G  YF+
Sbjct: 667 FVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFN 726

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHAN 646
            M  E+G     EHY+C++DLLGR  RL EA E+++  P +     +   L + C +H  
Sbjct: 727 QMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKK 786

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
           ++LGE     L+E + +   +Y +LSN+YA+  +W +V ++R  +K  G+KK PGCSW++
Sbjct: 787 LDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIE 846

Query: 707 GKEGTATFFVGDRTHPQSQKIYE---ILAGLVQRIKAMGY 743
             +    F V D++HPQ+  IYE   ILA  V++ + + +
Sbjct: 847 VGKRIHPFVVEDKSHPQADMIYECMSILASHVEKYQVLSF 886


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/443 (45%), Positives = 291/443 (65%), Gaps = 5/443 (1%)

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           +V NAL+DMYAK    D A  +F+ +   ++DV +WT ++     NG   +AL LF +M 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMT--DKDVISWTSLVTGCVHNGSYEEALRLFCEM- 59

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511
            +   + P+   ++  L ACA L  L FG+Q+HA  L++     +  V N L+ MY++ G
Sbjct: 60  -RIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLS-VDNSLVSMYAKCG 117

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            I+ A  VFD+++ ++V++WT+L+ GY  +G G ++   ++ M   G+ PD +TF+ LL+
Sbjct: 118 CIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLF 177

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           ACSH+G+V+ G  YF SM + +GI    EHYAC++DLLGR+ +L EA EL+  M ++P  
Sbjct: 178 ACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDA 237

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
            +W ALL  CR+H NVELGE AAN L ELE +    Y LLSN+Y+ AG+W++ A+ R LM
Sbjct: 238 TVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLM 297

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFAL 751
           K  GV K PGCSW++       F   DR+HP++ +IY  +  ++  IK  GYVP  +FAL
Sbjct: 298 KLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFAL 357

Query: 752 HDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHE 811
           HD+D+E K   L  HSEKLA+A+G+LT  PG PIRI KNLRICGDCH+A+ ++S + +  
Sbjct: 358 HDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRH 417

Query: 812 IILRDSNRFHHFKEGSCTCKGYW 834
           +ILRDSN FHHF+EG+C+C  YW
Sbjct: 418 VILRDSNCFHHFREGACSCSDYW 440



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 18/268 (6%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           NA+V  Y++ G F+ AF +F+KM  ++V    ++W++++ G    G   EAL +F +M+ 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDV----ISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ P+ + + ++LS CA +  L  GK+ H   +K  L         L V N+L+ MYAK
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLG------SSLSVDNSLVSMYAK 115

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  ++ A  +FD++  + +DV TWT +I  Y+QNG   ++L  +  M      VKP+  T
Sbjct: 116 CGCIEDANKVFDSM--EIQDVITWTALIVGYAQNGRGRESLNFYNBMIASG--VKPDFIT 171

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
               L AC+    +  GR     +         P    C+ID+  RSG +  A+ + + +
Sbjct: 172 FIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQM 231

Query: 524 K-QRNVVSWTSLMTGYGMHG---LGDKA 547
             Q +   W +L+    +HG   LG++A
Sbjct: 232 AVQPDATVWKALLAACRVHGNVELGERA 259



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 27/291 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W +L+   V     + A RLF +M   G HPD+     VL AC EL     G  VHA
Sbjct: 33  VISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHA 92

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
               SG  S++ V N+L++MYA+C  +  A ++FD M    I D+++W  ++  YAQ+G 
Sbjct: 93  NFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSM---EIQDVITWTALIVGYAQNGR 149

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
               L  +  M     V+ D ++ +  L AC+           G++E  +  F+ M+   
Sbjct: 150 GRESLNFYNBMIAS-GVKPDFITFIGLLFACS---------HAGLVEHGRSYFQSMEEVY 199

Query: 280 VVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            +      +  M+    R G   +A  L  +M    V+ +   W A++A  A R HG+  
Sbjct: 200 GIKPGPEHYACMIDLLGRSGKLMEAKELLNQMA---VQPDATVWKALLA--ACRVHGNVE 254

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           L          LEP       LLS   S      GK       +R++ + G
Sbjct: 255 LGERAANNLFELEPKNAVPYVLLSNLYSAA----GKWEEAAKTRRLMKLRG 301



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 31/228 (13%)

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
            V NAL+ MYA+     YA  +F++M      D++SW ++V     +G  E  L LF  M
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDK---DVISWTSLVTGCVHNGSYEEALRLFCEM 59

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------------CGM 264
              + +  D + +   LSACA L     GKQ                          CG 
Sbjct: 60  R-IMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGC 118

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +E+A KVF+ M+++DV++W A++ GY++ G   ++   +  M    VK + +T+  ++  
Sbjct: 119 IEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFA 178

Query: 325 YAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
            +  G        F+ M +  G++P       ++      G L+  KE
Sbjct: 179 CSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKE 226


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/554 (38%), Positives = 317/554 (57%), Gaps = 15/554 (2%)

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           +SWN ++ GY + G  E A  LF +M   NV     TW+A++AG    G   E+L  F  
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNV----ATWNAMVAGLTNSGLNEESLGFFFA 56

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+  G++P+   L SL   CA +  ++ G++ H Y ++  L        D+ V ++L  M
Sbjct: 57  MRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLD------RDMCVGSSLAHM 110

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           Y +C  +        A+   N  + +    I   +QNG A  AL  F  M  +   V+ N
Sbjct: 111 YMRCGFLRDGEAALRALPSLN--IVSCNTTISGRTQNGDAEGALEFFCLM--RGAGVEAN 166

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
           A T   A+ +C+ LAAL  G+QIHA  ++   + ++P V   L+ MYSR G +  +  V 
Sbjct: 167 AVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVP-VMTSLVHMYSRCGCLGDSERVC 225

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
                 ++V  +++++ YG HG G KA   F QM   G  P+ VTFL LLYACSHSG+ D
Sbjct: 226 LEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKD 285

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G+  F+ M+K +G+    +HY CIVDLLGR+  L+EA +LI  MP++P  +IW  LL+ 
Sbjct: 286 EGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA 345

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
           C+     ++ E  A R++EL+     SY LLSNI A + RW+DV+++R  M+   V+K P
Sbjct: 346 CKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEP 405

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           G SWV+ K     F  GD +H + ++I E L  ++ RI+  GY P  S   HD++DEEK 
Sbjct: 406 GVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKE 465

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             L  HSEKLA+A+  L+   G PIR+ KNLR+C DCH AI  +S +I  EI++RD +RF
Sbjct: 466 VSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRF 525

Query: 821 HHFKEGSCTCKGYW 834
           HHFK+G C+C  YW
Sbjct: 526 HHFKDGKCSCGDYW 539



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 141/292 (48%), Gaps = 15/292 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  YV +     A  L   +     +V  WNA++       L + +   F  M R G  
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPAR--NVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PDEY    + + C  L     G  VHA +  SG D ++ V ++L  MY RC  L      
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
              +  P + +IVS NT ++   Q+GDAEG L  F  M G   V+ + V+ V+A+++C+ 
Sbjct: 124 LRAL--PSL-NIVSCNTTISGRTQNGDAEGALEFFCLMRG-AGVEANAVTFVSAVTSCSD 179

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
           L   ++G+Q   +     V + + V       ++V  YSR G   D+    +++  E   
Sbjct: 180 LAALAQGQQIHALAIKTGVDKVVPV-----MTSLVHMYSRCGCLGDS----ERVCLEYSG 230

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            ++V  SA+I+ Y   GHG +A+ +F+QM   G EPN VT ++LL  C+  G
Sbjct: 231 TDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSG 282



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 165/367 (44%), Gaps = 30/367 (8%)

Query: 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233
           N L+  Y +   L  AR+LFDEM  P   ++ +WN +VA    SG  E  L  F  M  +
Sbjct: 4   NILIGGYVKNGDLETARKLFDEM--PAR-NVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
             +Q D   L +    CA L     G+Q         V      +D+   +++   Y R 
Sbjct: 61  -GMQPDEYGLGSLFRCCAGLRDVVSGRQV-----HAYVVRSGLDRDMCVGSSLAHMYMRC 114

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G   D  A  + +      LN+V+ +  I+G  Q G    AL+ F  M+  G+E N VT 
Sbjct: 115 GFLRDGEAALRALPS----LNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTF 170

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV-DVARV 412
           VS ++ C+ + AL  G++ H   IK    VD   P    V+ +L+ MY++C  + D  RV
Sbjct: 171 VSAVTSCSDLAALAQGQQIHALAIK--TGVDKVVP----VMTSLVHMYSRCGCLGDSERV 224

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
             +       D+   + MI +Y  +G    A+ LF QM       +PN  T    L AC+
Sbjct: 225 CLEY---SGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAG--AEPNEVTFLTLLYACS 279

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTAR-VVFDNLKQRNVV 529
                  G  ++ + L  +   L P V +  C++D+  RSG ++ A  ++     Q + V
Sbjct: 280 HSGLKDEG--MNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGV 337

Query: 530 SWTSLMT 536
            W +L++
Sbjct: 338 IWKTLLS 344


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 360/620 (58%), Gaps = 30/620 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSS 156
           S+  +N +IR  VR  L  +A  +F++M+  G    PD YT+PFV KA GEL S   G  
Sbjct: 79  SLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLV 138

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  I  S F  + +V NAL+AMY     +  AR +FD M      D++SWNT+++ Y +
Sbjct: 139 IHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNR---DVISWNTMISGYYR 195

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +G     LM+F  M  +  V  D  ++V+ L  C  L     G+    + E K++ ++++
Sbjct: 196 NGYMNDALMMFDWMVNE-GVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIE 254

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           VK     NA+V  Y + G  ++A  +F +M + +V    +TW+ +I GY + G    AL+
Sbjct: 255 VK-----NALVNMYLKCGRMDEARFVFGRMERRDV----ITWTCMINGYIEDGDVENALE 305

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           + R MQF G+ PN VT+ SL+S C     L  GK  H + I++ +        D+++  +
Sbjct: 306 LCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVC------SDIIIETS 359

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LI MYAKCK +D+   +F   A +N     W+ +I    QN    DAL LF +M ++D  
Sbjct: 360 LISMYAKCKHIDLCFRVFSG-ASRNH-TGPWSAIIAGCVQNELVRDALDLFKRMRRED-- 415

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+PN  TL+  L A A LA LR    IH Y+ +  + M     A  L+ +YS+ G +++A
Sbjct: 416 VEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGF-MSSLDAATGLVHVYSKCGTLESA 474

Query: 517 RVVFDNL----KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
             +F+ +    K ++VV W +L++GYGMHG G  A   F +M + G+ P+ +TF   L A
Sbjct: 475 HKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNA 534

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSHSG+V++GL  F  M + +   AR+ HY CIVDLLGRA RLDEA  LI  +P EPT  
Sbjct: 535 CSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTST 594

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           IW ALL  C  H NV+LGE+AAN+L ELE E  G+Y LL+NIYA  GRWKD+ ++R++M+
Sbjct: 595 IWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMME 654

Query: 693 HTGVKKRPGCSWVQGKEGTA 712
           + G++K+PG S ++ +  ++
Sbjct: 655 NVGLRKKPGHSTIEIRSNSS 674


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/519 (41%), Positives = 315/519 (60%), Gaps = 13/519 (2%)

Query: 318 WSAVIAGYAQRGHGHE-ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++ +I  YAQ GH  + AL ++  M    + PN  T   +L  CA +  L LG+  H   
Sbjct: 99  FNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSV 158

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKS-VDVARVMFDAIAPKNRDVATWTVMIGSYS 435
           +K     D      + V N ++ MY+ C   ++ AR +FD + PK+ D  TW+ MIG Y+
Sbjct: 159 VKFGFDCD------IHVQNTMVHMYSCCAGGINSARKVFDEM-PKS-DSVTWSAMIGGYA 210

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           + G + +A+ALF +M  Q   V P+  T+   L AC  L AL  G+ I AY+ R++    
Sbjct: 211 RVGRSTEAVALFREM--QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKP 268

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           +  V+N LIDM+++ GDI  A  +F  + ++ +VSWTS++ G  MHG G +A   F++M 
Sbjct: 269 VE-VSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMT 327

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             G+APD V F+ LL ACSHSG+V++G +YF SM K++ +  + EHY C+VD+  R   +
Sbjct: 328 SSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLV 387

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
            EA+E +  MP+EP P+I   L++ CR H   +LGE     L++ E   + +Y LLSNIY
Sbjct: 388 KEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIY 447

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A    W+   +IR +M+  G+KK PG + ++       F  GD++H Q ++IYE++  + 
Sbjct: 448 AKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMG 507

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
           + +K  GY P TS  L D+++E+K D L  HSEKLA+A+G+L T PGTPIRI KNLR+C 
Sbjct: 508 REMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCS 567

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCHSA  FIS I + EII+RD NRFHHFK G C+C  +W
Sbjct: 568 DCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 204/455 (44%), Gaps = 62/455 (13%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSH--NAPSPALSLL--QRISPSPF 98
           LL+ C +L ++  IH  I+   L + P      A +S   +A   A S L         +
Sbjct: 35  LLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLY 94

Query: 99  SVFWWNALIRRAVRL-RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
             F +N LIR   +     D A  L+  M+     P+++T+PFVLKAC  L     G +V
Sbjct: 95  DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154

Query: 158 HAVICSSGFDSNVFVCNALMAMYARC-DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           H  +   GFD ++ V N ++ MY+ C   ++ AR++FDEM +    D V+W+ ++  YA+
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKS---DSVTWSAMIGGYAR 211

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G +   + LF  M    +V  D +++V+ LSAC  LG    GK      E  ++ + ++
Sbjct: 212 VGRSTEAVALFREMQM-AEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVE 270

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           V      NA++  +++ G    A  LF+ M ++     +V+W++VI G A  G G EA  
Sbjct: 271 VS-----NALIDMFAKCGDISKALKLFRAMNEK----TIVSWTSVIVGMAMHGRGQEATC 321

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F +M   G+ P+ V  + LLS C+  G +  G+E     +K+                 
Sbjct: 322 LFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKY---------------- 365

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
                               + PK   +  +  M+  Y + G   +AL      F ++  
Sbjct: 366 -------------------KLVPK---IEHYGCMVDMYCRTGLVKEALE-----FVRNMP 398

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
           ++PN   L   + AC      + G +I   +++++
Sbjct: 399 IEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHE 433



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 205/441 (46%), Gaps = 36/441 (8%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ-LFDEMFQP 199
           +L+AC  LP     + +H  I   G  +N  V     ++ +      YA   LF      
Sbjct: 35  LLQACNALPKL---TQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADT 91

Query: 200 GICDIVSWNTIVAAYAQSGDA-EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
            + D   +NT++ AYAQ+G + +  L L+  M  D  +  +  +    L ACA L   + 
Sbjct: 92  RLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDA-ILPNKFTYPFVLKACAGLEVLNL 150

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI-GSFEDAFALFKKMRQENVKLNVVT 317
           G Q       K  F+     D+   N MV  YS   G    A  +F +M     K + VT
Sbjct: 151 G-QTVHGSVVKFGFD----CDIHVQNTMVHMYSCCAGGINSARKVFDEMP----KSDSVT 201

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           WSA+I GYA+ G   EA+ +FR+MQ   + P+ +T+VS+LS C  +GAL LGK    Y  
Sbjct: 202 WSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIE 261

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +  +         + V NALIDM+AKC  +  A  +F A+  K   + +WT +I   + +
Sbjct: 262 RHEIH------KPVEVSNALIDMFAKCGDISKALKLFRAMNEKT--IVSWTSVIVGMAMH 313

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
           G   +A  LF +M      V P+       L AC+    +  GR+    +++ +Y+ L+P
Sbjct: 314 GRGQEATCLFEEMTSSG--VAPDDVAFIGLLSACSHSGLVERGREYFGSMMK-KYK-LVP 369

Query: 498 FVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMT---GYGMHGLGDKAHWAF 551
            + +  C++DMY R+G +  A     N+  + N V   +L++   G+G   LG+K     
Sbjct: 370 KIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLL 429

Query: 552 DQMRKEGLAPDGVTFLVLLYA 572
             M+ E L       L  +YA
Sbjct: 430 --MKHEPLHESNYVLLSNIYA 448


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/667 (36%), Positives = 350/667 (52%), Gaps = 54/667 (8%)

Query: 203  DIVSWNTIVAAYAQS-GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            + + WN+ V  +  S G     L +F  + G   V    V  V AL  C  +     G  
Sbjct: 486  NYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSV-ALKTCTRVMDIWLG-- 542

Query: 262  CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
               ME    + +R    DV    A++  Y R    E A  +F +M      L    W+  
Sbjct: 543  ---MEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALL----WNEA 595

Query: 322  IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS-VGALLLGKETHCYTIKRV 380
            I    Q     + +++FR+MQF  L+    T+V +L    S +G L +GKETH Y ++  
Sbjct: 596  IILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNG 655

Query: 381  LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------------- 421
               D      + V  +LIDMY K  S+  A+ +FD +  +N                   
Sbjct: 656  FDCD------VYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFED 709

Query: 422  --------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
                           D+ TW  MI  Y+  G   +ALA F QM Q+   V PN+ +++C 
Sbjct: 710  ALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEG--VMPNSASITCL 767

Query: 468  LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
            L ACA L+ L+ G++IH   +RN +   + FVA  LIDMYS+S  +  A  VF  ++ + 
Sbjct: 768  LRACASLSLLQKGKEIHCLSIRNGFIEDV-FVATALIDMYSKSSSLKNAHKVFRRIQNKT 826

Query: 528  VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
            + SW  ++ G+ + GLG +A   F++M+K G+ PD +TF  LL AC +SG++ +G KYFD
Sbjct: 827  LASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFD 886

Query: 588  SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            SM  ++ I  R EHY C+VDLLGRA  LDEA +LI  MP++P   IW ALL  CRIH N+
Sbjct: 887  SMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNL 946

Query: 648  ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
            +  E AA  L +LE     +Y L+ N+Y+   RW+D+  +R LM   GV+ R   SW+Q 
Sbjct: 947  KFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQI 1006

Query: 708  KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
             +    F   ++ HP + KIY  L  LV  +K +GYVP  +    ++D+ EK  +L  H+
Sbjct: 1007 NQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHT 1066

Query: 768  EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
            EKLA+ YG++    G PIR+ KN RIC DCHSA  +IS++   E+ LRD  RFHHF+EG 
Sbjct: 1067 EKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGK 1126

Query: 828  CTCKGYW 834
            C+C  +W
Sbjct: 1127 CSCNDFW 1133



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 213/426 (50%), Gaps = 45/426 (10%)

Query: 120 FRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179
             +F ++  +G   D   +   LK C  +     G  +H  +   GFD +V++  ALM  
Sbjct: 508 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 567

Query: 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD 239
           Y RC  L  A Q+F EM  P   + + WN  +    QS   + G+ LF +M     ++ +
Sbjct: 568 YGRCWGLEKANQVFHEMPNP---EALLWNEAIILNLQSEKLQKGVELFRKMQFSF-LKAE 623

Query: 240 GVSLVNALSACAS-LGTWSRGKQ-----------CGM---------------MEEAKKVF 272
             ++V  L A  S LG  + GK+           C +               +  A+ VF
Sbjct: 624 TATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVF 683

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           + MK +++ +WN++V+GYS  G FEDA  L  +M +E +K ++VTW+ +I+GYA  G G 
Sbjct: 684 DNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGK 743

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EAL  F QMQ  G+ PN  ++  LL  CAS+  L  GKE HC      LS+     +D+ 
Sbjct: 744 EALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHC------LSIRNGFIEDVF 797

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V  ALIDMY+K  S+  A  +F  I  +N+ +A+W  MI  ++  G   +A+++F +M  
Sbjct: 798 VATALIDMYSKSSSLKNAHKVFRRI--QNKTLASWNCMIMGFAIFGLGKEAISVFNEM-- 853

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRS 510
           Q   V P+A T +  L AC     +  G +    ++ +    ++P + +  C++D+  R+
Sbjct: 854 QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDY--RIVPRLEHYCCMVDLLGRA 911

Query: 511 GDIDTA 516
           G +D A
Sbjct: 912 GYLDEA 917



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 143/357 (40%), Gaps = 52/357 (14%)

Query: 73   LIAAYVSHNAPSPALSLLQRISPSPFS--VFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
            L++ Y        AL LL ++        +  WN +I           A   F QM + G
Sbjct: 697  LVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEG 756

Query: 131  WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              P+  +   +L+AC  L   + G  +H +   +GF  +VFV  AL+ MY++  +L  A 
Sbjct: 757  VMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAH 816

Query: 191  QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
            ++F  +    +    SWN ++  +A  G  +  + +F  M   V V  D ++    LSAC
Sbjct: 817  KVFRRIQNKTLA---SWNCMIMGFAIFGLGKEAISVFNEMQ-KVGVGPDAITFTALLSAC 872

Query: 251  ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
                     K  G++ E  K F           ++M+T Y  +   E             
Sbjct: 873  ---------KNSGLIGEGWKYF-----------DSMITDYRIVPRLEH------------ 900

Query: 311  VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
                   +  ++    + G+  EA D+   M    L+P+     +LL  C  +   L   
Sbjct: 901  -------YCCMVDLLGRAGYLDEAWDLIHTMP---LKPDATIWGALLGSC-RIHKNLKFA 949

Query: 371  ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            ET     K +  ++ ++  + +++  L  ++ + + +D  R +  A   +NR V +W
Sbjct: 950  ET---AAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSW 1003


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/492 (43%), Positives = 305/492 (61%), Gaps = 15/492 (3%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P      SLL  C +  A+  GK+ H          D       ++   L+++Y  C 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFD------TVIATKLVNLYCVCD 124

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
           S+  AR++FD I PK+ ++  W V+I  Y+ NG    A+ L+ QMF  D  + P+ FT  
Sbjct: 125 SLSSARLLFDRI-PKH-NIFLWNVLIRGYAWNGPYEAAVQLYYQMF--DYGLVPDNFTFP 180

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L ACA L+A+  GR+IH +V++  +E  + FV   LIDMY++ G + +AR VFD +  
Sbjct: 181 FVLKACAALSAIEHGREIHEHVVQTGWEKDV-FVGAALIDMYAKCGCVGSAREVFDKILV 239

Query: 526 RN---VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           R+   VVSW +++TGY MHG   +A   F++M +    PD +TF+ +L ACSH G++++G
Sbjct: 240 RDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEG 298

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             +F++M +++ I    +HY C+VDLLG + RLDEA  LI  M + P   +W ALLN C+
Sbjct: 299 WMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCK 358

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IHANVELGE+A  RL+ELE +  G+Y +LSNIYA AG+W+ VA++R LM    +KK   C
Sbjct: 359 IHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIAC 418

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++ K     F  GD +HP S +IY  L  +   +K  GY P T    HDV+D+EK ++
Sbjct: 419 SWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANM 478

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           +  HSE+LA+A+G+++T PGT + ITKNLRIC DCH AI FIS I   EI +RD NR+HH
Sbjct: 479 VCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHH 538

Query: 823 FKEGSCTCKGYW 834
           FK+G C+C  YW
Sbjct: 539 FKDGVCSCGDYW 550



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 137/289 (47%), Gaps = 25/289 (8%)

Query: 30  SVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPS 84
           S   TP     + LL+ C   K++     +H Q+ +       V  + L+  Y   ++ S
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 85  PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
            A  L  RI     ++F WN LIR        + A +L+ QM   G  PD +TFPFVLKA
Sbjct: 128 SARLLFDRIPKH--NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKA 185

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C  L +   G  +H  +  +G++ +VFV  AL+ MYA+C  +  AR++FD++       +
Sbjct: 186 CAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLV 245

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           VSWN ++  YA  G A   L LF  M    K   D ++ V  LSAC      S G   G+
Sbjct: 246 VSWNAMITGYAMHGHATEALDLFEEMNRVAK--PDHITFVGVLSAC------SHG---GL 294

Query: 265 MEEAKKVFERMKVKD------VVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           +EE    FE M ++D      V  +  MV      G  ++A+ L  +M+
Sbjct: 295 LEEGWMFFETM-IRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMK 342



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D V    +V  Y    S   A  LF ++ + N+ L    W+ +I GYA  G    A+ ++
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFL----WNVLIRGYAWNGPYEAAVQLY 164

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QM   GL P+  T   +L  CA++ A+  G+E H + ++           D+ V  ALI
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQT------GWEKDVFVGAALI 218

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           DMYAKC  V  AR +FD I  ++   V +W  MI  Y+ +G A +AL LF +M   +++ 
Sbjct: 219 DMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEM---NRVA 275

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDT 515
           KP+  T    L AC+    L  G      ++R+    + P V +  C++D+   SG +D 
Sbjct: 276 KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDY--KIDPTVQHYTCMVDLLGHSGRLDE 333

Query: 516 ARVVFDNLKQRNVVS----WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           A   ++ + Q  V+     W +L+    +H   +    A +++ +  L PD     V+L
Sbjct: 334 A---YNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIE--LEPDDAGNYVIL 387


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 330/558 (59%), Gaps = 16/558 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D V    +V  Y+  G    A  +F +M  +    NV  W+ +I  YA+ G    A++++
Sbjct: 102 DAVLATRLVDLYASCGHVSLARRVFDEMPNQG---NVFLWNVLIRAYARDGPCEAAIELY 158

Query: 339 RQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           R M  +  ++P+  T   +L  CA++  L  G+E H     RV+  + +   D+ V   L
Sbjct: 159 RAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVH----DRVMRTNWA--TDVFVCTGL 212

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMYAKC  +D A  +F+      RD A W  MI +  QNG   +AL L   M  +   +
Sbjct: 213 IDMYAKCGCMDEAWAVFNDTTI--RDAAVWNSMIAACGQNGRPAEALTLCRNMAAEG--I 268

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            P   TL  A+ A A  +AL  GR++H Y  R  +        + L+DMY++SG +  A 
Sbjct: 269 APTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTS-LLDMYAKSGWVMVAH 327

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHS 576
           V+F+ L  R ++SW +++ G+GMHG  D A   F +MR E  + PD +TF+ +L AC+H 
Sbjct: 328 VLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHG 387

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           GMV +  + FD M   + I    +HY C+VD+LG + R  EA ++I+GM ++P   IW A
Sbjct: 388 GMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGA 447

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LLNGC+IH NVEL ELA  +L+ELE E  G+Y LLSNIYA +G+W++ AR+R LM + G+
Sbjct: 448 LLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGL 507

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK   CSW++ K     F VGD +HP+S  IYE L  L   I   GYVP T+   H+V+D
Sbjct: 508 KKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVED 567

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +EK ++++ HSE+LA+A+G+++T P T + +TKNLR+C DCH  I  IS I   EII+RD
Sbjct: 568 DEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRD 627

Query: 817 SNRFHHFKEGSCTCKGYW 834
            NR+HHF  G C+CK +W
Sbjct: 628 VNRYHHFVNGECSCKDHW 645



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 38/332 (11%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQN--LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +LR C   +++     +H +++V    L  V  + L+  Y S    S A  +   + P+ 
Sbjct: 74  ILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM-PNQ 132

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSS 156
            +VF WN LIR   R    + A  L+  M+  G   PD +T+P VLKAC  L     G  
Sbjct: 133 GNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGRE 192

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VH  +  + + ++VFVC  L+ MYA+C  +  A  +F++     I D   WN+++AA  Q
Sbjct: 193 VHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDT---TIRDAAVWNSMIAACGQ 249

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
           +G     L L   M  +  +     +LV+A+SA A      RG++               
Sbjct: 250 NGRPAEALTLCRNMAAE-GIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDK 308

Query: 262 -----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE- 309
                       G +  A  +FE++  ++++SWNAM+ G+   G  + AF LF +MR E 
Sbjct: 309 LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEA 368

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
            V  + +T+  V++     G   EA +VF  M
Sbjct: 369 QVMPDHITFVGVLSACNHGGMVQEAKEVFDLM 400



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           N    +  L +C    A+R GRQ+HA +L +    L   +A  L+D+Y+  G +  AR V
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTG-LDAVLATRLVDLYASCGHVSLARRV 125

Query: 520 FDNL-KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACSHSG 577
           FD +  Q NV  W  L+  Y   G  + A   +  M   G + PD  T+  +L AC+   
Sbjct: 126 FDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALL 185

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYAC--IVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            +  G +  D + +    +   + + C  ++D+  +   +DEA  +     +     +W 
Sbjct: 186 DLSAGREVHDRVMR---TNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAA-VWN 241

Query: 636 ALLNGC 641
           +++  C
Sbjct: 242 SMIAAC 247


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 342/601 (56%), Gaps = 41/601 (6%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G+ ++A++ F+ +  KD V W  ++ G  R G  ++A    +++  +  + NVV+W+++I
Sbjct: 154 GLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEA----RRLLVQAPERNVVSWTSLI 209

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG------------------ 364
           AGY++ G   +A+  F  M   G+ P+ V ++  LS C+ +                   
Sbjct: 210 AGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIR 269

Query: 365 ------ALLLGKETHCYTIKRVLSV-----DGSHPDDLMVINALIDMYAKCKSVDVARVM 413
                   L+     C  I +  +V      G  P+     NA+ID Y K   VDVAR +
Sbjct: 270 MTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPW---NAIIDGYCKLGHVDVARSL 326

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +    RDV T+  MI  Y  +G   DAL LF QM +    ++ + FT+   L ACA 
Sbjct: 327 FDQMGA--RDVITFNSMITGYIHSGRLRDALQLFMQMRRHG--MRADNFTVVSLLTACAS 382

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L AL  GR +HA + +   E  + ++   L+DMY + G +D A  VF  + +R+V +WT+
Sbjct: 383 LGALPHGRALHASIEQRIVEEDV-YLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTA 441

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           ++ G   +G+G  A  +F QM+++G  P  VT++ +L ACSHS ++D+G  +F+ M    
Sbjct: 442 MIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLH 501

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
            +  + EHY C++DLL R+  LDEA+ L++ MPM+P  +IW ++L+ CR+H N++L   A
Sbjct: 502 KLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHA 561

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A  LL+L  E+D  Y  L NIY ++ +W D  R+R LM+  GVKK  G S +        
Sbjct: 562 AEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHK 621

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F   D++HP + +I  ++  +  R+K++GY P TS    DVD+EEK   L  HSEK+A+A
Sbjct: 622 FVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIA 681

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G+++  P  PI I KNLR+C DCHSAI  +S + N EII+RD +RFHHF++G+C+C  +
Sbjct: 682 FGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDF 741

Query: 834 W 834
           W
Sbjct: 742 W 742



 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 167/592 (28%), Positives = 275/592 (46%), Gaps = 89/592 (15%)

Query: 48  KSLTQVYLIHQQIIVQ-NLTHVPPSHLIAAYVSHNAPSP-----ALSLLQRISPSPFSVF 101
           +S+ Q   +H  +     + H P +  + + +++   +P      LSL  R+  S  + F
Sbjct: 10  RSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHS--TTF 67

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSV--H 158
            ++  +R  ++     +   L L+ MR G      +TF FV + C     +R G  +  H
Sbjct: 68  LFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLH 127

Query: 159 AVICSSGFDSNV-FVCNALMAMYARCDTLSYARQLFDE---------------MFQPGIC 202
           A    +   S    V N L+ MYA       AR+ FDE               + + G+ 
Sbjct: 128 AACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLL 187

Query: 203 D-------------IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           D             +VSW +++A Y+++G     +  F  M  D  V  D V+++ ALSA
Sbjct: 188 DEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSD-GVAPDEVAVIGALSA 246

Query: 250 CASLGTWSRG--------------------------KQCGMMEEAKKVFERM-KVKDVVS 282
           C+ L     G                           +CG + +A+ VF+ + + +    
Sbjct: 247 CSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEP 306

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           WNA++ GY ++G  + A +LF +M   +V    +T++++I GY   G   +AL +F QM+
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDV----ITFNSMITGYIHSGRLRDALQLFMQMR 362

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G+  +  T+VSLL+ CAS+GAL  G+  H    +R++       +D+ +  AL+DMY 
Sbjct: 363 RHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVE------EDVYLGTALLDMYM 416

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  VD A  +F  +    RDV TWT MI   + NG   DAL  F QM ++D   +P + 
Sbjct: 417 KCGRVDEATAVFHRMG--ERDVHTWTAMIAGLAFNGMGKDALESFCQM-KRDGF-QPTSV 472

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVF 520
           T    L AC+  + L  GR +H   +R+ ++ L P V +  C+ID+ +RSG +D A  + 
Sbjct: 473 TYIAVLTACSHSSLLDEGR-LHFNEMRSLHK-LHPQVEHYGCMIDLLARSGLLDEAMHLV 530

Query: 521 DNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
             +  Q N V W S+++   +H   D A  A + + K  LAP+     V LY
Sbjct: 531 QTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLK--LAPEEDAVYVQLY 580


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 350/601 (58%), Gaps = 34/601 (5%)

Query: 239 DGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296
           D  S    L +CASL     G+Q  C + +   +        +     A+++ Y + G  
Sbjct: 52  DAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCET-------EPFVLTALISMYCKCGLV 104

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
            DA  +F++  Q + +L+V  ++A+I+GY       +A  +FR+M+  G+  + VT++ L
Sbjct: 105 ADARKVFEENPQSS-QLSV-CYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGL 162

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           +  C     L LG+  H   +K      G    ++ V+N+ I MY KC SV+  R +FD 
Sbjct: 163 VPLCTVPEYLWLGRSLHGQCVK------GGLDSEVAVLNSFITMYMKCGSVEAGRRLFDE 216

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +  K   + TW  +I  YSQNG A D L L+ QM  +   V P+ FTL   L +CA L A
Sbjct: 217 MPVKG--LITWNAVISGYSQNGLAYDVLELYEQM--KSSGVCPDPFTLVSVLSSCAHLGA 272

Query: 477 LRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            + G ++   V  N +   +P  FV+N  I MY+R G++  AR VFD +  +++VSWT++
Sbjct: 273 KKIGHEVGKLVESNGF---VPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAM 329

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           +  YGMHG+G+     FD M K G+ PDG  F+++L ACSHSG+ D+GL+ F +M +E+ 
Sbjct: 330 IGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 389

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           +    EHY+C+VDLLGRA RLDEA+E IE MP+EP   +W ALL  C+IH NV++ ELA 
Sbjct: 390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAF 449

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            +++E E    G Y L+SNIY+++   + + RIR +M+    +K+PG S+V+ K     F
Sbjct: 450 AKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLF 509

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLALA 773
             GDR+H Q+++++ +L  L   +  +           D D  EE      EHSE+LA+A
Sbjct: 510 LAGDRSHEQTEEVHRMLDELETSVMELA-------GNMDCDRGEEVSSTTREHSERLAIA 562

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +GIL + PGT I + KNLR+C DCH  +  +S I++ + ++RD++RFH+FK+G C+CK Y
Sbjct: 563 FGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDY 622

Query: 834 W 834
           W
Sbjct: 623 W 623



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 225/495 (45%), Gaps = 76/495 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN  +R      L   +  L+  M+R G  PD ++FPF+LK+C  L     G  +H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G ++  FV  AL++MY +C  ++ AR++F+E  Q      V +N +++ Y  +     
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLS-VCYNALISGYTANSKVTD 139

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACAS-----LGTWSRGK----------------- 260
              +F RM  +  V  D V+++  +  C       LG    G+                 
Sbjct: 140 AAYMFRRMK-ETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 261 ----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +CG +E  +++F+ M VK +++WNA+++GYS+ G   D   L+++M+         
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSS------- 251

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
                                       G+ P+  TLVS+LS CA +GA  +G E     
Sbjct: 252 ----------------------------GVCPDPFTLVSVLSSCAHLGAKKIGHE----- 278

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           + +++  +G  P ++ V NA I MYA+C ++  AR +FD +  K+  + +WT MIG Y  
Sbjct: 279 VGKLVESNGFVP-NVFVSNASISMYARCGNLAKARAVFDIMPVKS--LVSWTAMIGCYGM 335

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           +G     L LF  M ++   ++P+       L AC+       G ++   + R       
Sbjct: 336 HGMGEIGLMLFDDMIKRG--IRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPG 393

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           P   +CL+D+  R+G +D A    +++  + +   W +L+    +H   D A  AF ++ 
Sbjct: 394 PEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI 453

Query: 556 KEGLAPDGVTFLVLL 570
           +    P+ + + VL+
Sbjct: 454 E--FEPNNIGYYVLM 466


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/678 (34%), Positives = 365/678 (53%), Gaps = 48/678 (7%)

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
           YA  LF  +    + + + +N+++   ++SG+    ++ + R+   V  + D +S    L
Sbjct: 65  YALNLFSSI--SPLPESIVFNSLLRDLSRSGEPRATILFYQRIR-HVGGRFDRISFPPIL 121

Query: 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
            A + +     G     ME     F+   + D      ++  Y+  G    A  +F +M 
Sbjct: 122 KAVSKVSALFEG-----MELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMS 176

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           Q +V    VTW+ +I  Y + G   EA  +F +M+   + P+ + L +++S C   G + 
Sbjct: 177 QRDV----VTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR 232

Query: 368 LGKETHCYTIKRVLSVDGS-------------------------HPDDLMVINALIDMYA 402
             +  + + I+  + +D                              +L V  A++  Y+
Sbjct: 233 YNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYS 292

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           K   +D ARV+FD    K  D+  WT MI +Y+++    +AL +F +M      +KP+  
Sbjct: 293 KAGRLDDARVIFDQTEMK--DLVCWTTMISAYAESDHPQEALRVFEEMCCSG--IKPDVV 348

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T+   + AC  L  L   + +H Y   N  E ++P + N LI+MY++ G +D AR VF+ 
Sbjct: 349 TMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLP-IDNALINMYAKCGGLDAARDVFEK 407

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  RNVVSW+S++  + MHG    +   F QM++E + P+ VTF+ +LY CSHSG+V++G
Sbjct: 408 MPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEG 467

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            K F SM+ E+ I+ + EHY C+VDL GRAN L EA+E+IE MPM P  +IW +L++ CR
Sbjct: 468 KKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACR 527

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H  +ELGELAA R+L+LE + DG+  L+SNIYA   RW  V  IR +M+   V K  G 
Sbjct: 528 VHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGL 587

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           S +     +  F +GD+ H QS +IY  L  +V ++K  GYVP     L DV++EEK DL
Sbjct: 588 SRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDL 647

Query: 763 LFEHSEKLALAYGILTTAPGTP------IRITKNLRICGDCHSAITFISMIINHEIILRD 816
           +  HSEKLAL +G++             IRI KNLR+C DCH+    +S +   EII+RD
Sbjct: 648 VLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRD 707

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFH +K+G C+C+ YW
Sbjct: 708 RTRFHRYKDGLCSCRDYW 725



 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 177/560 (31%), Positives = 282/560 (50%), Gaps = 64/560 (11%)

Query: 47  CKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
           CKSL  +  +H  I+   + H        ++   S    S AL+L   ISP P S+ + N
Sbjct: 25  CKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIVF-N 83

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
           +L+R   R   P  A  LF Q +R  G   D  +FP +LKA  ++ +   G  +H     
Sbjct: 84  SLLRDLSRSGEP-RATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFK 142

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
               S+ FV   LM MYA C  ++YAR +FDEM Q    D+V+WNT++  Y + G  +  
Sbjct: 143 IATLSDPFVETGLMDMYAACGRINYARNVFDEMSQR---DVVTWNTMIERYCRFGLLDEA 199

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------------- 261
             LF  M  D  V  D + L N +SAC   G     +                       
Sbjct: 200 FKLFEEMK-DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVT 258

Query: 262 ----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
                G M+ A + F +M V+++    AMV+GYS+ G  +DA  +F +   +    ++V 
Sbjct: 259 MYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMK----DLVC 314

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT- 376
           W+ +I+ YA+  H  EAL VF +M   G++P+VVT++S++S C ++G L   K  H YT 
Sbjct: 315 WTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTH 374

Query: 377 ---IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              ++ VL +D          NALI+MYAKC  +D AR +F+ +  +N  V +W+ MI +
Sbjct: 375 LNGLESVLPID----------NALINMYAKCGGLDAARDVFEKMPTRN--VVSWSSMINA 422

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           ++ +G A+D+L+LF QM Q++  V+PN  T    L  C+    +  G++I A  + ++Y 
Sbjct: 423 FAMHGEASDSLSLFAQMKQEN--VEPNEVTFVGVLYGCSHSGLVEEGKKIFA-SMTDEYN 479

Query: 494 MLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWA 550
            + P + +  C++D++ R+  +  A  V +++    NVV W SLM+   +HG  +    A
Sbjct: 480 -ITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELA 538

Query: 551 FDQMRKEGLAPDGVTFLVLL 570
             ++ K  L PD    LVL+
Sbjct: 539 AKRILK--LEPDHDGALVLM 556



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 175/408 (42%), Gaps = 101/408 (24%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S   V  WN +I R  R  L D AF+LF +M      PDE     ++ ACG   + R   
Sbjct: 176 SQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNR 235

Query: 156 SVHAVICSSGFD-------------------------------SNVFVCNALMAMYARCD 184
           +++  +  +                                   N+FV  A+++ Y++  
Sbjct: 236 AIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAG 295

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            L  AR +FD   Q  + D+V W T+++AYA+S   +  L +F  M     ++ D V+++
Sbjct: 296 RLDDARVIFD---QTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCS-GIKPDVVTML 351

Query: 245 NALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVK 278
           + +SAC +LGT  + K                          +CG ++ A+ VFE+M  +
Sbjct: 352 SVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR 411

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +VVSW++M+  ++  G   D+ +LF +M+QENV+ N VT+  V+ G +  G   E   +F
Sbjct: 412 NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIF 471

Query: 339 RQM---------------------------------QFCGLEPNVVTLVSLLSGCASVGA 365
             M                                 +   + PNVV   SL+S C   G 
Sbjct: 472 ASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGE 531

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
           L LG+       KR+L ++  H   L++++   ++YA+    D  R++
Sbjct: 532 LELGE----LAAKRILKLEPDHDGALVLMS---NIYAREYRWDYVRII 572


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 338/600 (56%), Gaps = 29/600 (4%)

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           LS C S       ++ G M  A+++F+ +    V SWN M  GYSRI   +   +L+ +M
Sbjct: 53  LSFCCS-------REFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEM 105

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC-----GLEPNVVT---LVSLLS 358
            + NVK +  T+  +  G+ +      AL + R++  C     GL+ NV     L+++ S
Sbjct: 106 LERNVKPDCYTYPFLFKGFTRS----VALQLGRELH-CHVVKYGLDSNVFAHNALINMYS 160

Query: 359 GCASV----GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            C  +    G   +  ++   T   ++S       D++   A++  +     VD AR  F
Sbjct: 161 LCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYF 220

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
             +    RD  +WT MI  Y +     +AL LF +M  Q   +KP+ FT+   L ACA+L
Sbjct: 221 HKMP--ERDHVSWTAMIDGYLRLNCYKEALMLFREM--QTSKIKPDEFTMVSVLTACAQL 276

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
            AL  G  I  Y+ +N+ +    FV N LIDMY + G+++ A  +F+ L QR+  +WT++
Sbjct: 277 GALELGEWIRTYIDKNKVKN-DTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAM 335

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594
           + G  ++G G++A   F QM K  + PD VT++ +L AC+H+GMVD+G K+F SM+   G
Sbjct: 336 VVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHG 395

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I     HY C+VDLLG+A  L EA E+I+ MPM+P  I+W ALL  CRIH + E+ E A 
Sbjct: 396 IEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAI 455

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
            ++LELE      Y L  NIYA   +W  +  +R +M   G+KK PGCS ++       F
Sbjct: 456 EQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEF 515

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
             GD++HPQ+++IY  L  +   +K  GY P TS    D+ +E+K + ++ HSEKLA+A+
Sbjct: 516 VAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAF 575

Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G++ + PG  IRI KNLR+C DCH     +S + + E+I+RD  RFHHF+ GSC+CK YW
Sbjct: 576 GLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 208/495 (42%), Gaps = 77/495 (15%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSP--ALSLLQRISPSPF 98
           L   CKS+  +  IH + I   +   P   + +++   S        A  L   I P P 
Sbjct: 20  LFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTI-PEP- 77

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SVF WN + +   R+  P     L+L+M+ R   PD YT+PF+ K      + + G  +H
Sbjct: 78  SVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELH 137

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--------------DI 204
             +   G DSNVF  NAL+ MY+ C  +  AR +FD   +  +               D+
Sbjct: 138 CHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDV 197

Query: 205 VSWNTIVAAYAQSGDAEG-------------------------------GLMLFARMTGD 233
           +SW  IV  +  +G  +                                 LMLF  M   
Sbjct: 198 ISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTS 257

Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSR 292
            K++ D  ++V+ L+ACA LG    G      E  +   ++ KVK D    NA++  Y +
Sbjct: 258 -KIKPDEFTMVSVLTACAQLGALELG------EWIRTYIDKNKVKNDTFVGNALIDMYFK 310

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G+ E A ++F  + Q     +  TW+A++ G A  G G EAL++F QM    + P+ VT
Sbjct: 311 CGNVEMALSIFNTLPQR----DKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVT 366

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
            V +LS C   G +  GK+       R     G  P ++     ++D+  K   +  A  
Sbjct: 367 YVGVLSACTHTGMVDEGKKFFASMTAR----HGIEP-NIAHYGCMVDLLGKAGHLKEAHE 421

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN---AFTLSCALM 469
           +   + P   +   W  ++G+   +  A  A     Q+ +    ++PN    + L C + 
Sbjct: 422 IIKNM-PMKPNSIVWGALLGACRIHKDAEMAERAIEQILE----LEPNNGAVYVLQCNIY 476

Query: 470 -ACARLAALRFGRQI 483
            AC +   LR  RQ+
Sbjct: 477 AACNKWDKLRELRQV 491


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/517 (39%), Positives = 308/517 (59%), Gaps = 9/517 (1%)

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           ++ +I  Y+      +   ++R+M+  G+ PN ++   ++  C  + +L+ G + H   +
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARIL 195

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           +     DG H  D +++  L+D+Y+ C   + A  +FD I     D  +W V+I     N
Sbjct: 196 R-----DG-HQSDNLLLTTLMDLYSCCDKFEEACKVFDEIP--QWDTVSWNVLISCCIHN 247

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
               DAL +F  M       +P+  T    L ACA L AL FG ++H Y+  + Y+  + 
Sbjct: 248 RRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALN 307

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            + N LI MYSR G ++ A  +F  + +RNVVSW+++++G+ MHG G +A  AF+QM++ 
Sbjct: 308 -LCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQL 366

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G++PD  T   +L ACSH G+VD GL +FD MSK FGI     HY C+VDLLGRA  LD+
Sbjct: 367 GVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQ 426

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A +LI  M ++P   +W  LL  CRIH +  LGE     L+EL++++ G Y LL NIY++
Sbjct: 427 AYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSS 486

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            G W  V  +R  MK  G++  PGCS ++ K     F V D  HP++ +IYE+L  + ++
Sbjct: 487 VGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQ 546

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           +K  GYV + S  LH++  EEKG+ L  HSEKLA+A+G+L T PGT IR+ KNLRIC DC
Sbjct: 547 LKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDC 606

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+    +S   N E+++RD  RFHHF+EG C+C GYW
Sbjct: 607 HNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 190/403 (47%), Gaps = 39/403 (9%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIA-AYVSHNAPSPALSL-------LQRIS 94
           L++ C   T +  IH  II  +L     +H I+  ++S  A SP+  +        Q + 
Sbjct: 74  LIKSCSKKTHLLQIHAHIIRTSLIQ---NHFISLQFLSRAALSPSRDMGYSSQVFSQIMK 130

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           PS      +N +IR       P+  F L+ +M RRG  P+  +  FV+K+C  + S   G
Sbjct: 131 PSGSQ---YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGG 187

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             +HA I   G  S+  +   LM +Y+ CD    A ++FDE+ Q    D VSWN +++  
Sbjct: 188 LQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQ---WDTVSWNVLISCC 244

Query: 215 AQSGDAEGGLMLFARMTGDVK-VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
             +      L +F  M       + D V+ +  L ACA+LG    G      E      E
Sbjct: 245 IHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFG------ERVHNYIE 298

Query: 274 RMKVKDVVSW-NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
                  ++  N+++T YSR G  E A+++FK+M + NV    V+WSA+I+G+A  G+G 
Sbjct: 299 EHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNV----VSWSAMISGFAMHGYGR 354

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EA++ F QMQ  G+ P+  TL  +LS C+  G +  G         R+  V G  P ++ 
Sbjct: 355 EAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDG----LMFFDRMSKVFGIEP-NIH 409

Query: 393 VINALIDMYAKCKSVDVAR--VMFDAIAPKNRDVATWTVMIGS 433
               ++D+  +   +D A   +M   I P   D   W  ++G+
Sbjct: 410 HYGCMVDLLGRAGLLDQAYQLIMSMVIKP---DSTLWRTLLGA 449


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 322/549 (58%), Gaps = 14/549 (2%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  YS+      +  LF     ++      TWS+VI+ +AQ      AL  FR+M   G
Sbjct: 48  LINFYSKTNLPHSSLKLFDSFPHKSA----TTWSSVISSFAQNDLPLPALRFFRRMLRHG 103

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L P+  TL +      +  ++              LS+  +H  D+ V ++L+D YAKC 
Sbjct: 104 LLPDDHTLPT------AAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCG 157

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            V++AR +FD +  KN  V +W+ MI  YSQ G   +AL LF +  +QD  ++ N FTLS
Sbjct: 158 DVNLARKVFDEMPHKN--VVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLS 215

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L  C+       G+Q+H    +  ++    FVA+ LI +YS+ G ++    VF+ +K 
Sbjct: 216 SVLRVCSASTLFELGKQVHGLCFKTSFDSSC-FVASSLISLYSKCGVVEGGYKVFEEVKV 274

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
           RN+  W +++     H    +    F++M + G+ P+ +TFL LLYACSH+G+V++G   
Sbjct: 275 RNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHC 334

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645
           F  M KE GI   ++HYA +VDLLGRA +L+EAV +I+ MPM+PT  +W ALL GCRIH 
Sbjct: 335 FGLM-KEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHG 393

Query: 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705
           N EL    A+++ E+ +   G   LLSN YA AGRW++ AR R +M+  G+KK  G SWV
Sbjct: 394 NTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWV 453

Query: 706 QGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
           +      TF  GDR+H ++++IYE L  L + +   GYV  TSF L +VD +EK   +  
Sbjct: 454 EEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVLKEVDGDEKSQTIRY 513

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSE+LA+A+G++T  P  PIR+ KNLR+CGDCH+AI FIS      II+RD+NRFH F++
Sbjct: 514 HSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFED 573

Query: 826 GSCTCKGYW 834
           G CTC  YW
Sbjct: 574 GKCTCGDYW 582



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 207/449 (46%), Gaps = 28/449 (6%)

Query: 31  VTTTPCIKITSLLL--RQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPA 86
           V  + C  I  +L+     +SL +   +H Q+I      +P    HLI  Y   N P  +
Sbjct: 2   VVLSDCRDICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSS 61

Query: 87  LSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146
           L L         S   W+++I    +  LP  A R F +M+R G  PD++T P   K+  
Sbjct: 62  LKLFDSFPHK--SATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVA 119

Query: 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS 206
            L S     S+HA+   +    +VFV ++L+  YA+C  ++ AR++FDEM      ++VS
Sbjct: 120 ALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHK---NVVS 176

Query: 207 WNTIVAAYAQSGDAEGGLMLFAR-MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           W+ ++  Y+Q G  E  L LF R +  D  ++ +  +L + L  C++   +  GKQ   +
Sbjct: 177 WSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGL 236

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
                 F+          +++++ YS+ G  E  + +F++++  N+ +    W+A++   
Sbjct: 237 -----CFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGM----WNAMLIAC 287

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD- 384
           AQ  H     ++F +M+  G++PN +T + LL  C+  G  L+ K  HC+ + +   ++ 
Sbjct: 288 AQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAG--LVEKGEHCFGLMKEHGIEP 345

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
           GS          L+D+  +   ++ A ++   + P     + W  ++     +G    A 
Sbjct: 346 GSQH-----YATLVDLLGRAGKLEEAVLVIKEM-PMQPTESVWGALLTGCRIHGNTELAS 399

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACAR 473
            +  ++F+   +       LS A  A  R
Sbjct: 400 FVADKVFEMGAVSSGIQVLLSNAYAAAGR 428



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           +LR G Q+H  V++  +E  IP V + LI+ YS++    ++  +FD+   ++  +W+S++
Sbjct: 22  SLRKGLQLHGQVIKLGFEA-IPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVI 80

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           + +  + L   A   F +M + GL PD  T 
Sbjct: 81  SSFAQNDLPLPALRFFRRMLRHGLLPDDHTL 111


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 269/829 (32%), Positives = 418/829 (50%), Gaps = 113/829 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS-SRCGSSVHAVI 161
           W  LIR   ++   + A  LF  M   G  P    F  VL AC   P     G  +H V+
Sbjct: 67  WARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVL 126

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +  +S+ +V   L+ MY +C ++  AR++FD +       +V WN ++ AYAQ    E
Sbjct: 127 RGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHK---RVVEWNAMITAYAQQDHHE 183

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------- 260
             + +F  M  +  V+ + ++ +  L AC+ L      K                     
Sbjct: 184 QAIQVFYAMLLE-GVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFAT 242

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG +E+A + F R +++ +++  AM+T Y++   +++A  LFK M  E VKL
Sbjct: 243 ALVNFYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKL 301

Query: 314 NVVTWSAVI-----------------------------AG------YAQRGHGHEALDVF 338
           + +   AV+                             AG      Y + G   EA++VF
Sbjct: 302 DRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVF 361

Query: 339 RQ-------------------------------MQFCGLEPNVVTLVSLLSGCASVGALL 367
           R                                MQ  G++ + ++ V+ L  CA+  AL 
Sbjct: 362 RSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALA 421

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G+  H + ++  +        D+M+ NA++DMY  CKS D A  +F A+  K RD  +W
Sbjct: 422 KGRMIHSWIVESGIKA------DVMLDNAILDMYGSCKSTDDASRVFRAM--KARDQVSW 473

Query: 428 TVMIGSY-SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
             MI +Y +Q   +++AL LF QM  Q     P+  +   AL ACA  A+L  G+ +H  
Sbjct: 474 NAMITAYAAQPRLSSEALLLFQQM--QLHGFMPDVISFVAALSACAAQASLAEGKLLHDR 531

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           +     E  +  VAN +++MY++SG +  AR +F  +   +V+SW  +++ +  HG  D+
Sbjct: 532 IRETGLESNMT-VANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQ 590

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-GISARAEHYACI 605
               F +M  EG  P+ VTF+ ++ ACSH G+V  G++ F S+  +F  IS RAEHY C+
Sbjct: 591 VLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCM 650

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDL+ RA +LD A + I   P++P  +I   +L   ++H +VE    +A  L+EL  ++ 
Sbjct: 651 VDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRS 710

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
            +Y +LSN+Y   G+  + A+IR LM    ++K P  S +  K     FF GD T+ ++ 
Sbjct: 711 AAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTP 770

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +I E L  L   +   GY P T+  LHDV DE+K  LL  HSEKLA+A+G+++TAPGT +
Sbjct: 771 EILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSL 830

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RI KNLR+CGDCH+A  FIS I   EI++RDS+RFHHF  G+C+C  YW
Sbjct: 831 RIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 220/514 (42%), Gaps = 78/514 (15%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VHA IC S  D   F+ + L+ MY  C +L  A+  FD M    + D ++W  ++ A
Sbjct: 17  GKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRM---PVQDALTWARLIRA 73

Query: 214 YAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSR------------- 258
           + Q GD+E  L LF  M   G   V  + V+++ A SA   L    R             
Sbjct: 74  HGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMES 133

Query: 259 ------------GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                       GK C  +E+A+KVF+ ++ K VV WNAM+T Y++    E A  +F  M
Sbjct: 134 DHYVSTTLLHMYGK-CSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAM 192

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             E VK             A+R                      +T + +L  C+ +  L
Sbjct: 193 LLEGVK-------------AER----------------------ITFIGVLDACSKLKDL 217

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            + K       +R    +  H  D     AL++ Y  C  ++ A   F A +    ++  
Sbjct: 218 EVAKLVKLCVEER----EHDHLHDSSFATALVNFYGSCGDLEQA---FRAFSRHRLELIL 270

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
            T MI  Y+Q    ++AL LF  M  +   VK +       L AC+    L  GR IH +
Sbjct: 271 ATAMITQYTQRERWDEALELFKVMLLEG--VKLDRIACMAVLNACSGPRGLEEGRMIHGF 328

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           +   +++  +    N LI+MY + G ++ A  VF +++ R+V+SW +++  +G H    +
Sbjct: 329 MREIRFDRHVN-AGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPE 387

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A      M+ +G+  D ++F+  L  C+ S  + +G +   S   E GI A       I+
Sbjct: 388 ALHLLHLMQLDGVKADKISFVNALPLCAASEALAKG-RMIHSWIVESGIKADVMLDNAIL 446

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           D+ G     D+A  +   M      + W A++  
Sbjct: 447 DMYGSCKSTDDASRVFRAMKARDQ-VSWNAMITA 479



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 155/377 (41%), Gaps = 47/377 (12%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL   A   +L LGKE H    K  +   G    DL     L+ MY  C S+  A+  FD
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMD-RGPFMGDL-----LVRMYVDCGSLIDAKACFD 57

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC-ARL 474
            +  +  D  TW  +I ++ Q G +  AL LF  M  Q + V P        L AC A  
Sbjct: 58  RMPVQ--DALTWARLIRAHGQIGDSEQALHLFRSM--QLEGVAPVNRNFVAVLGACSADP 113

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             L  GR+IH  VLR        +V+  L+ MY +   ++ AR VFD ++ + VV W ++
Sbjct: 114 ELLEEGRRIHG-VLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAM 172

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-------------------H 575
           +T Y      ++A   F  M  EG+  + +TF+ +L ACS                   H
Sbjct: 173 ITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREH 232

Query: 576 SGMVDQGLK------YFDSMSKEFGISARAEHY------ACIVDLLGRANRLDEAVELIE 623
             + D          Y      E    A + H         ++    +  R DEA+EL +
Sbjct: 233 DHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFK 292

Query: 624 GMPMEPTP---IIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIYANAG 679
            M +E      I  +A+LN C     +E G +    + E+  ++   +   L N+Y   G
Sbjct: 293 VMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCG 352

Query: 680 RWKDVARIRSLMKHTGV 696
             ++   +   M+H  V
Sbjct: 353 SLEEAVEVFRSMQHRDV 369


>gi|297810463|ref|XP_002873115.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
 gi|297318952|gb|EFH49374.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
          Length = 896

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/801 (32%), Positives = 414/801 (51%), Gaps = 63/801 (7%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW- 131
           LI+ Y+    P  A   L  +S S  +V  + ALI    RL L   A ++F +M + G  
Sbjct: 120 LISTYLKLGFPREAF--LVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGIV 177

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR-----CDTL 186
            P+EYTF  +L AC  +     G  +H +I  SGF ++VFV N+LM++Y++     CD +
Sbjct: 178 QPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVGNSLMSLYSKDSGSSCDDV 237

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV---SL 243
               +LFDE+      D+ SWNT++++  + G +     LF  M    +V+G GV   +L
Sbjct: 238 ---LKLFDEIPHR---DVASWNTVISSLVKEGKSHKAFNLFYEMN---RVEGLGVDCFTL 288

Query: 244 VNALSACASLGTWSRGKQ-------CGMMEE----------------AKKV---FERMKV 277
              LS+C       RG++        G+M+E                 KKV   +E M V
Sbjct: 289 STLLSSCTDSSDLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFGDMKKVESLYEMMMV 348

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +D V++  M+T Y   G  + A  +F+ + ++N     +T++A++AG+ + GHG +AL +
Sbjct: 349 QDAVTFTEMITAYMAFGMVDSAVEIFENITEKNT----ITYNALMAGFCRNGHGLKALKL 404

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           F +M   G+E    +L S +  C  V    + ++ H + IK    ++        +  AL
Sbjct: 405 FTEMLQRGVELTDFSLTSAVDACGLVSEKRVSEQIHGFCIKFGCLLNPC------IQTAL 458

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTV-MIGSYSQNGGANDALALFPQMFQQDKL 456
           +DM  +C+ +  A  MF+   P N D +  T  ++G Y++NG  + AL+LF +   +++L
Sbjct: 459 LDMCTRCERMADAEEMFEQ-WPSNLDRSKATTSILGGYARNGLPDKALSLFHRTLCEEEL 517

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
              +  +L+  L  C  L     G QIH Y L+  Y   +  + N LI MYS+  D D A
Sbjct: 518 F-LDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDVC-LGNSLISMYSKCCDSDDA 575

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC--S 574
             VF+ +++ +VVSW SL++ Y +   G++A   + +M +E + PD +T  +++ A   +
Sbjct: 576 IKVFNTMQEHDVVSWNSLISCYILQRNGNEALALWSRMNEEEIKPDMITLTLVISAFRYT 635

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
            S  +      F SM   + I    EHY   V +LG    L+EA + I  MP +P   + 
Sbjct: 636 ESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPFQPEVSVL 695

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ CR+H+N  + +  A  +L  + E    Y L SNIY+ +G W     IR  M+  
Sbjct: 696 RALLDSCRVHSNTSVAKRVAKLVLSTKPENPSEYILKSNIYSASGLWHRSEMIREEMRER 755

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G +K P  SW+  ++   +F   D +HPQ + IY  L  L+      GY P T F L +V
Sbjct: 756 GYRKHPSKSWIIHEKKVHSFHARDTSHPQEKDIYSGLEILIMECLKSGYEPNTEFVLQEV 815

Query: 755 DDEEKGDLLFEHSEKLALAYGILTT-APGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           D+  K   LF HS KLA+ YGILT+   G P+R+ KN+ +CGDCH    ++S+++  EI+
Sbjct: 816 DEFMKKSFLFHHSAKLAVTYGILTSNTRGKPVRVVKNVMLCGDCHEFFKYVSVVVKREIV 875

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           LRDS+ FHHF  G C+C+  W
Sbjct: 876 LRDSSGFHHFVNGKCSCRDLW 896



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 53/391 (13%)

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           F +++ +     NA+++ Y ++G   +AF +F  +        VV+++A+I+G+++    
Sbjct: 106 FLKLREEKTRLGNALISTYLKLGFPREAFLVFVSLSSP----TVVSYTALISGFSRLNLE 161

Query: 332 HEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
            EAL VF +M+  G+ +PN  T V++L+ C  V    LG + H   +K          + 
Sbjct: 162 IEALKVFFRMRKAGIVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVK------SGFLNS 215

Query: 391 LMVINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
           + V N+L+ +Y+K    S D    +FD I   +RDVA+W  +I S  + G ++ A  LF 
Sbjct: 216 VFVGNSLMSLYSKDSGSSCDDVLKLFDEIP--HRDVASWNTVISSLVKEGKSHKAFNLFY 273

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +M + + L   + FTLS  L +C   + L  GR++H   +R      +  V N LI  YS
Sbjct: 274 EMNRVEGL-GVDCFTLSTLLSSCTDSSDLLRGRELHGRAIRIGLMQELS-VNNALIGFYS 331

Query: 509 RSGD-------------------------------IDTARVVFDNLKQRNVVSWTSLMTG 537
           + GD                               +D+A  +F+N+ ++N +++ +LM G
Sbjct: 332 KFGDMKKVESLYEMMMVQDAVTFTEMITAYMAFGMVDSAVEIFENITEKNTITYNALMAG 391

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL--KYFDSMSKEFGI 595
           +  +G G KA   F +M + G+     +    + AC   G+V +    +       +FG 
Sbjct: 392 FCRNGHGLKALKLFTEMLQRGVELTDFSLTSAVDAC---GLVSEKRVSEQIHGFCIKFGC 448

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMP 626
                    ++D+  R  R+ +A E+ E  P
Sbjct: 449 LLNPCIQTALLDMCTRCERMADAEEMFEQWP 479



 Score = 47.4 bits (111), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           + +HA  L+ + E     + N LI  Y + G    A +VF +L    VVS+T+L++G+  
Sbjct: 100 KAVHASFLKLREEK--TRLGNALISTYLKLGFPREAFLVFVSLSSPTVVSYTALISGFSR 157

Query: 541 HGLGDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLK 584
             L  +A   F +MRK G+  P+  TF+ +L AC        G++
Sbjct: 158 LNLEIEALKVFFRMRKAGIVQPNEYTFVAILTACVRVSRFSLGIQ 202


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 344/596 (57%), Gaps = 28/596 (4%)

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV-VSWNAMVTGYSRIGSFEDAFALFKK 305
           L+ C+      +GKQ         V E++    + V  N+M+  YS+ G   +A  +F  
Sbjct: 11  LNKCSKRRLLDQGKQ------VHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNT 64

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           +   NV    ++W+A+IAGY    +G EAL++FR+M+  G  P+  T  S L  C+   A
Sbjct: 65  LPVRNV----ISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADA 120

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
              G + H   I+              V  AL+D+Y KC+ +  AR +FD I  K+  V 
Sbjct: 121 AGEGMQIHAALIRHGFPYLAQSA----VAGALVDLYVKCRRMAEARKVFDRIEEKS--VM 174

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
           +W+ +I  Y+Q     +A+ LF ++  ++   + + F LS  +   A  A L  G+Q+HA
Sbjct: 175 SWSTLILGYAQEDNLKEAMDLFREL--RESRHRMDGFVLSSIIGVFADFALLEQGKQMHA 232

Query: 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGD 545
           Y ++  Y +L   VAN ++DMY + G    A  +F  + +RNVVSWT ++TGYG HG+G+
Sbjct: 233 YTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGN 292

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605
           KA   F++M++ G+ PD VT+L +L ACSHSG++ +G KYF  +     I  + EHYAC+
Sbjct: 293 KAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACM 352

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDLLGR  RL EA  LIE MP++P   IW  LL+ CR+H +VE+G+     LL  E    
Sbjct: 353 VDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNP 412

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
            +Y ++SN+YA+AG WK+  +IR  +K  G+KK  G SWV+  +    F+ GD  HP  +
Sbjct: 413 ANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIE 472

Query: 726 KIYEILAGLVQRIK-AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
           +I+E+L  + +R+K  MGYV   +F+LHDV++E K + L  HSEKLA+  G++    G  
Sbjct: 473 EIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAI--GLVLVRRGLK 530

Query: 785 ------IRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                 IRI KNLR+CGDCH+ I  +S ++    ++RD+NRFH F+ G C+C  YW
Sbjct: 531 LKGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 224/486 (46%), Gaps = 88/486 (18%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L  C +      G  VH V+   GFD    V N+++ MY++C  +  A ++F+ +  P 
Sbjct: 10  ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTL--P- 66

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           + +++SWN ++A Y    + E  L LF  M    +V  DG +  ++L AC+       G 
Sbjct: 67  VRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVP-DGYTYSSSLKACSCADAAGEGM 125

Query: 261 Q----------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
           Q                            C  M EA+KVF+R++ K V+SW+ ++ GY++
Sbjct: 126 QIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQ 185

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
             + ++A  LF+++R+   +++    S++I  +A                F  LE     
Sbjct: 186 EDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFA---------------DFALLEQ---- 226

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
                           GK+ H YTIK    +      ++ V N+++DMY KC     A  
Sbjct: 227 ----------------GKQMHAYTIKVPYGL-----LEMSVANSVLDMYMKCGLTVEADA 265

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +F  +  +N  V +WTVMI  Y ++G  N A+ LF +M  Q+  ++P++ T    L AC+
Sbjct: 266 LFREMLERN--VVSWTVMITGYGKHGIGNKAVELFNEM--QENGIEPDSVTYLAVLSACS 321

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVV 529
               ++ G++  + +  NQ   + P V +  C++D+  R G +  A+ + + +  + NV 
Sbjct: 322 HSGLIKEGKKYFSILCSNQ--KIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVG 379

Query: 530 SWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
            W +L++   MHG   +G +       +R+EG  P     +  +YA  H+G   +  K  
Sbjct: 380 IWQTLLSVCRMHGDVEMGKQVGEIL--LRREGNNPANYVMVSNMYA--HAGYWKESEKIR 435

Query: 587 DSMSKE 592
           +++ ++
Sbjct: 436 ETLKRK 441



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 164/369 (44%), Gaps = 79/369 (21%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNA+I      R  + A  LF +M  +G  PD YT+   LKAC    ++  G  +H
Sbjct: 69  NVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIH 128

Query: 159 AVICSSGFD--SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           A +   GF   +   V  AL+ +Y +C  ++ AR++FD + +     ++SW+T++  YAQ
Sbjct: 129 AALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEK---SVMSWSTLILGYAQ 185

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------- 261
             + +  + LF R   + + + DG  L + +   A      +GKQ               
Sbjct: 186 EDNLKEAMDLF-RELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEM 244

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       CG+  EA  +F  M  ++VVSW  M+TGY + G    A  LF +M++ 
Sbjct: 245 SVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQEN 304

Query: 310 NVKLNVVTWSAVIAG-----------------------------YA-------QRGHGHE 333
            ++ + VT+ AV++                              YA       + G   E
Sbjct: 305 GIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKE 364

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A ++  +M    L+PNV    +LLS C   G + +GK+     ++R    +G++P + ++
Sbjct: 365 AKNLIEKMP---LKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRR----EGNNPANYVM 417

Query: 394 INALIDMYA 402
           ++   +MYA
Sbjct: 418 VS---NMYA 423



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W  +I    +  + + A  LF +M   G  PD  T+  VL AC      + G    
Sbjct: 274 NVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYF 333

Query: 159 AVICSS-GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           +++CS+      V     ++ +  R   L  A+ L ++M  P   ++  W T+++     
Sbjct: 334 SILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKM--PLKPNVGIWQTLLSVCRMH 391

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNAL---SACASLGTWSRGKQCGMMEEAKKVFER 274
           GD E G     +  G++ ++ +G +  N +   +  A  G W         +E++K+ E 
Sbjct: 392 GDVEMG-----KQVGEILLRREGNNPANYVMVSNMYAHAGYW---------KESEKIRET 437

Query: 275 MKVK 278
           +K K
Sbjct: 438 LKRK 441


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 305/545 (55%), Gaps = 54/545 (9%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+ +G  + + ALF + +  +V      W+A+I G+A RG    A  +F  M     E +
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFF----WTAIIHGHALRGDVVSAQQLFDTMP----EKS 123

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
           +V+L ++L+                                          YAK   +D 
Sbjct: 124 LVSLTAMLT-----------------------------------------CYAKHGELDA 142

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           ARV+FD +  + RD   W VMI  Y+QNG  N+AL LF +M +     KPN  T+   L 
Sbjct: 143 ARVLFDGM--EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK--AKPNEVTVLSVLS 198

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC +L AL  GR +H+Y+  N  +  +  V   L+DMYS+ G ++ AR+VFD +  ++VV
Sbjct: 199 ACGQLGALESGRWVHSYIENNGIQFNV-HVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257

Query: 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
           +W S++ GY MHG   +A   F  M + GL P  +TF+ +L AC HSG V +G   F+ M
Sbjct: 258 AWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM 317

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649
             E+GI  + EHY C+V+LLGRA  +++A EL++ M +EP P++W  LL  CR+H  + L
Sbjct: 318 KDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIAL 377

Query: 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKE 709
           GE     L++      G+Y LLSNIYA  G W  VAR+R++MK +GVKK PGCS ++   
Sbjct: 378 GEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 437

Query: 710 GTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEK 769
               F  G   HP+ ++IY +L  +   +K+ GY PQT   LHD+ + EK   L  HSEK
Sbjct: 438 KVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEK 497

Query: 770 LALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829
           LA+A+G++ T PGT I+I KNLR+C DCH     IS I   +I++RD NRFHHF  GSC+
Sbjct: 498 LAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCS 557

Query: 830 CKGYW 834
           C  YW
Sbjct: 558 CGDYW 562



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 136/523 (26%), Positives = 231/523 (44%), Gaps = 89/523 (17%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HAV+   G D +  +   L   YA    L Y+  LF     P    +  W  I+  +A 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP---SVFFWTAIIHGHA- 104

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
                              ++GD VS                         A+++F+ M 
Sbjct: 105 -------------------LRGDVVS-------------------------AQQLFDTMP 120

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            K +VS  AM+T Y++ G  + A  LF  M + +     V W+ +I GY Q G  +EAL 
Sbjct: 121 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG----VCWNVMIDGYTQNGMPNEALV 176

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +FR+M     +PN VT++S+LS C  +GAL  G+  H Y     +        ++ V  A
Sbjct: 177 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQF------NVHVGTA 230

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY+KC S++ AR++FD I   ++DV  W  MI  Y+ +G + +AL LF  M +    
Sbjct: 231 LVDMYSKCGSLEDARLVFDKI--DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG-- 286

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDID 514
           + P   T    L AC     +  G  I    ++++Y  + P + +  C++++  R+G ++
Sbjct: 287 LHPTNITFIGILSACGHSGWVTEGWDIFNK-MKDEYG-IEPKIEHYGCMVNLLGRAGHVE 344

Query: 515 TARVVFDNLK-QRNVVSWTSLMTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            A  +  N+  + + V W +L+    +HG   LG+K     + +  + LA  G T+++L 
Sbjct: 345 QAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEK---IVELLVDQNLANSG-TYILLS 400

Query: 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630
              +  G  D G+    +M K+ G+       +  V+     N++ E +      P    
Sbjct: 401 NIYAAVGNWD-GVARLRTMMKDSGVKKEPGCSSIEVN-----NKVHEFLAGGLNHPKRKE 454

Query: 631 PIIWVALLNG-CRIHANV--------ELGELAANRLLELESEK 664
             + +  +NG  + H           ++GE    R LE+ SEK
Sbjct: 455 IYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEK 497



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 23/238 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    +  +P+ A  LF +M++    P+E T   VL ACG+L +   G  VH+ I 
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 217

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           ++G   NV V  AL+ MY++C +L  AR +FD++      D+V+WN+++  YA  G ++ 
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK---DVVAWNSMIVGYAMHGFSQE 274

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            L LF  M   + +    ++ +  LSAC            G + E   +F +MK +    
Sbjct: 275 ALQLFKSMC-RMGLHPTNITFIGILSACG---------HSGWVTEGWDIFNKMKDEYGIE 324

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             +  +  MV    R G  E A+ L K M   N++ + V W  ++   A R HG  AL
Sbjct: 325 PKIEHYGCMVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLG--ACRLHGKIAL 377


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/582 (37%), Positives = 337/582 (57%), Gaps = 44/582 (7%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y +    +DA  LF +M Q +     V+W++++  Y Q    ++ L +F  M  
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDH----VSWASILTAYNQAKLPNKTLSIFHYMFT 96

Query: 344 CG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              L+P+     +LL  CAS+ +L LGK+ H    + VLS      DD +V ++L+DMYA
Sbjct: 97  TDRLQPDHFVYATLLKACASLCSLRLGKQVHA---RFVLS---PFVDDDVVKSSLVDMYA 150

Query: 403 KCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGS 433
           KC    +AR +FD+I  K                              R++ +WT +I  
Sbjct: 151 KCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISG 210

Query: 434 YSQNGGANDALALFPQMFQQD-KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
             Q+G   D   +F +M ++   +V P    LS  + ACA LA L  G+QIH  V+ + Y
Sbjct: 211 LVQSGYCIDGCYMFIEMRREGVDIVDP--LVLSSVVGACANLAVLGLGKQIHGLVIGSGY 268

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E  + F++N L+DMY++  DI  AR VF+ +  R+VVSWTS++ G   HG   +A   +D
Sbjct: 269 ESCL-FISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYD 327

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           QM    + P+ VTF+ L+YACSH+G+V +G K F +M +++ IS   + + C +DLL R+
Sbjct: 328 QMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRS 387

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             L+EA +LI+ MP +P    W ALL+ C+ H N E+G   A+RLL L   +  +Y LLS
Sbjct: 388 GHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLS 447

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N+YA AG+W+ ++R+R LM    VK++PG S +   + +  F  G+  HP   +I+ +L 
Sbjct: 448 NVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLK 507

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L   ++  GY+P TS+ LHD++++EK   LF HSE+ A+AYG+L   PGT IRI KNLR
Sbjct: 508 ELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLR 567

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ICGDCH+ +   S I++ EII+RD+ R+HHFK+G C+C  +W
Sbjct: 568 ICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 209/429 (48%), Gaps = 45/429 (10%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           LK C +  +      +HA I  SG +    + N L+  Y +C+ L  A  LFDEM Q   
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQR-- 66

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            D VSW +I+ AY Q+      L +F  M    ++Q D       L ACASL +   GKQ
Sbjct: 67  -DHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQ 125

Query: 262 --------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
                                     CG+   A+ VF+ + VK  VSW AM++GY+R G 
Sbjct: 126 VHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGL 185

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE-PNVVTLV 354
            ++A  LF +        N+ +W+A+I+G  Q G+  +   +F +M+  G++  + + L 
Sbjct: 186 KDEAMELFLRTPVR----NLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLS 241

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S++  CA++  L LGK+ H       L +   +   L + NAL+DMYAKC  +  AR +F
Sbjct: 242 SVVGACANLAVLGLGKQIHG------LVIGSGYESCLFISNALVDMYAKCSDILAARNVF 295

Query: 415 DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474
           + +   +RDV +WT +I   +Q+G A +AL L+ QM   +  +KPN  T    + AC+  
Sbjct: 296 NRML--HRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAE--IKPNEVTFVGLIYACSHA 351

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTS 533
             +  GR++   ++ +        +  C +D+ SRSG ++ A  +   +  + +  +W +
Sbjct: 352 GLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAA 411

Query: 534 LMTGYGMHG 542
           L++    HG
Sbjct: 412 LLSACKHHG 420



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 193/443 (43%), Gaps = 55/443 (12%)

Query: 56  IHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           IH QI+   L    P  + L+ AY   N    A  L   + P    V W  +++    + 
Sbjct: 24  IHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM-PQRDHVSW-ASILTAYNQA 81

Query: 114 RLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV 172
           +LP+    +F  M       PD + +  +LKAC  L S R G  VHA    S F  +  V
Sbjct: 82  KLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVV 141

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR--- 229
            ++L+ MYA+C   S AR +FD +    +   VSW  +++ YA+SG  +  + LF R   
Sbjct: 142 KSSLVDMYAKCGLPSIARSVFDSIL---VKTSVSWTAMLSGYARSGLKDEAMELFLRTPV 198

Query: 230 ---------MTGDVK-------------VQGDGVSLVNAL------SACASLGTWSRGKQ 261
                    ++G V+             ++ +GV +V+ L       ACA+L     GKQ
Sbjct: 199 RNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQ 258

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
              +         + +      NA+V  Y++      A  +F +M   +V    V+W+++
Sbjct: 259 IHGLVIGSGYESCLFIS-----NALVDMYAKCSDILAARNVFNRMLHRDV----VSWTSI 309

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           I G AQ G   EALD++ QM    ++PN VT V L+  C+  G +  G++     + + +
Sbjct: 310 IVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRK-----LFKAM 364

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             D      L +    +D+ ++   ++ A  +   + P   D  TW  ++ +   +G   
Sbjct: 365 IEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTM-PHKPDEPTWAALLSACKHHGNTE 423

Query: 442 DALALFPQMFQQDKLVKPNAFTL 464
             + +  ++   + + +P+ + L
Sbjct: 424 MGVRIADRLLSLN-MHEPSTYVL 445



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 24/241 (9%)

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           L  C    A L  K+ H   +K  L+     P      N L+D Y KC  +  A  +FD 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLP------NTLLDAYGKCNLLQDAHYLFDE 62

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           +    RD  +W  ++ +Y+Q    N  L++F  MF  D+L +P+ F  +  L ACA L +
Sbjct: 63  MP--QRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL-QPDHFVYATLLKACASLCS 119

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVAN-----CLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           LR G+Q+HA  +      L PFV +      L+DMY++ G    AR VFD++  +  VSW
Sbjct: 120 LRLGKQVHARFV------LSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSW 173

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
           T++++GY   GL D+A   F +     L     ++  L+     SG    G   F  M +
Sbjct: 174 TAMLSGYARSGLKDEAMELFLRTPVRNL----YSWTALISGLVQSGYCIDGCYMFIEMRR 229

Query: 592 E 592
           E
Sbjct: 230 E 230


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/653 (36%), Positives = 366/653 (56%), Gaps = 28/653 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W++++    +    + A  +F+ + R+ G HP+E+    V++AC +L     G+ +H  +
Sbjct: 118 WSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFV 177

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             SGFD +V+V  +L+  Y++   +  AR +FD++ +      V+W TI+A Y + G + 
Sbjct: 178 VRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK---TAVTWTTIIAGYTKCGRSA 234

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L LFA+M  +  V  D   + + LSAC+ L     GKQ         V  R    DV 
Sbjct: 235 VSLELFAQMR-ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAY-----VLRRGTEMDVS 288

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             N ++  Y++    +    LF +M    V  N+++W+ +I+GY Q     EA+ +F +M
Sbjct: 289 VVNVLIDFYTKCNRVKAGRKLFDQM----VVKNIISWTTMISGYMQNSFDWEAMKLFGEM 344

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G +P+     S+L+ C S  AL  G++ H YTIK  L        D  V N LIDMY
Sbjct: 345 NRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLE------SDEFVKNGLIDMY 398

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AK   +  A+ +FD +A +N  V ++  MI  YS     ++AL LF +M  + +L KPN 
Sbjct: 399 AKSNLLIDAKKVFDVMAEQN--VISYNAMIEGYSSQEKLSEALELFHEM--RVRLQKPNE 454

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           FT +  + A + LA+LR G+Q H  +++   +   PFV N L+DMY++ G I+ AR +F+
Sbjct: 455 FTFAALITAASNLASLRHGQQFHNQLVKMGLD-FCPFVTNALVDMYAKCGSIEEARKMFN 513

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +   R+VV W S+++ +  HG  ++A   F +M KEG+ P+ VTF+ +L ACSH+G V+ 
Sbjct: 514 SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVED 573

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           GL +F+SM   FGI    EHYAC+V LLGR+ +L EA E IE MP+EP  I+W +LL+ C
Sbjct: 574 GLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC 632

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           RI  NVELG+ AA   +  + +  GSY LLSNI+A+ G W DV ++R  M  + V K PG
Sbjct: 633 RIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPG 692

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ-TSFALHD 753
            SW++       F   D TH ++  I  +L  L+Q IK  GYVP  T+  ++D
Sbjct: 693 RSWIEVNNKVNVFIARDTTHREAD-IGSVLDILIQHIKGAGYVPDATALLMND 744



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 244/467 (52%), Gaps = 28/467 (5%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  I  SG  S+ F+ N L+ + ++ D +  AR +FD+M      ++++W+++V+ Y+Q
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHK---NLITWSSMVSMYSQ 127

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERM 275
            G +E  LM+F  +        +   L + + AC  LG   +G Q  G +   +  F+  
Sbjct: 128 QGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFV--VRSGFD-- 183

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
             +DV    +++  YS+ G+ E+A  +F ++ ++      VTW+ +IAGY + G    +L
Sbjct: 184 --QDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK----TAVTWTTIIAGYTKCGRSAVSL 237

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
           ++F QM+   + P+   + S+LS C+ +  L  GK+ H Y ++R   +D S      V+N
Sbjct: 238 ELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS------VVN 291

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
            LID Y KC  V   R +FD +  KN  + +WT MI  Y QN    +A+ LF +M   ++
Sbjct: 292 VLIDFYTKCNRVKAGRKLFDQMVVKN--IISWTTMISGYMQNSFDWEAMKLFGEM---NR 346

Query: 456 LV-KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           L  KP+ F  +  L +C    AL  GRQ+HAY ++   E    FV N LIDMY++S  + 
Sbjct: 347 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLES-DEFVKNGLIDMYAKSNLLI 405

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A+ VFD + ++NV+S+ +++ GY       +A   F +MR     P+  TF  L+ A S
Sbjct: 406 DAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAAS 465

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           +   +  G ++ + + K  G+         +VD+  +   ++EA ++
Sbjct: 466 NLASLRHGQQFHNQLVK-MGLDFCPFVTNALVDMYAKCGSIEEARKM 511



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 201/434 (46%), Gaps = 88/434 (20%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           ++ A+ VF++M  K++++W++MV+ YS+ G  E+A  +F  +++++              
Sbjct: 100 VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKS-------------- 145

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
                               G  PN   L S++  C  +G +  G + H + ++      
Sbjct: 146 --------------------GEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVR------ 179

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
                D+ V  +LID Y+K  +++ AR++FD ++ K     TWT +I  Y++ G +  +L
Sbjct: 180 SGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKT--AVTWTTIIAGYTKCGRSAVSL 237

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
            LF QM + +  V P+ + +S  L AC+ L  L  G+QIHAYVLR   EM +  V N LI
Sbjct: 238 ELFAQMRETN--VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS-VVNVLI 294

Query: 505 DMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV 564
           D Y++   +   R +FD +  +N++SWT++++GY  +    +A   F +M + G  PDG 
Sbjct: 295 DFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGF 354

Query: 565 TFLVLLYACSHSGMVDQGL-----------------------------------KYFDSM 589
               +L +C     ++QG                                    K FD M
Sbjct: 355 ACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM 414

Query: 590 SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM---EPTPIIWVALLNGCRIHAN 646
           +++  IS     Y  +++      +L EA+EL   M +   +P    + AL+      A+
Sbjct: 415 AEQNVIS-----YNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLAS 469

Query: 647 VELGELAANRLLEL 660
           +  G+   N+L+++
Sbjct: 470 LRHGQQFHNQLVKM 483



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 12/300 (4%)

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +Q   L P      +LL    S   ++  K  H   I     V G   D  +  N LI++
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQII-----VSGLQSDTFLA-NILINV 93

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
            +K   VD ARV+FD +  KN  + TW+ M+  YSQ G + +AL +F  + Q+     PN
Sbjct: 94  CSKSDRVDNARVVFDKMPHKN--LITWSSMVSMYSQQGYSEEALMVFVDL-QRKSGEHPN 150

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
            F L+  + AC +L  +  G Q+H +V+R+ ++  + +V   LID YS++G+I+ AR+VF
Sbjct: 151 EFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDV-YVGTSLIDFYSKNGNIEEARLVF 209

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D L ++  V+WT+++ GY   G    +   F QMR+  + PD      +L ACS    ++
Sbjct: 210 DQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 269

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G K   +     G          ++D   + NR+    +L + M ++   I W  +++G
Sbjct: 270 GG-KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI-ISWTTMISG 327



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 144/300 (48%), Gaps = 32/300 (10%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  W  +I   ++      A +LF +M R GW PD +    VL +CG   +   G  VH
Sbjct: 317 NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVH 376

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A    +  +S+ FV N L+ MYA+ + L  A+++FD M +    +++S+N ++  Y+   
Sbjct: 377 AYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQ---NVISYNAMIEGYSSQE 433

Query: 219 DAEGGLMLFARMTGDVKVQG-DGVSLVNALSACASLGTWSRGKQ---------------- 261
                L LF  M   V++Q  +  +    ++A ++L +   G+Q                
Sbjct: 434 KLSEALELFHEMR--VRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV 491

Query: 262 ----------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
                     CG +EEA+K+F     +DVV WN+M++ +++ G  E+A  +F++M +E +
Sbjct: 492 TNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGI 551

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           + N VT+ AV++  +  G   + L+ F  M   G++P       ++S     G L   KE
Sbjct: 552 QPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKE 611


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 269/829 (32%), Positives = 418/829 (50%), Gaps = 113/829 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS-SRCGSSVHAVI 161
           W  LIR   ++   + A  LF  M   G  P    F  VL AC   P     G  +H V+
Sbjct: 67  WARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVL 126

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +  +S+ +V   L+ MY +C ++  AR++FD +       +V WN ++ AYAQ    E
Sbjct: 127 RGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHK---RVVEWNAMITAYAQQDHHE 183

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--------------------- 260
             + +F  M  +  V+ + ++ +  L AC+ L      K                     
Sbjct: 184 QAIQVFYAMLLE-GVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFAT 242

Query: 261 -------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                   CG +E+A + F R +++ +++  AM+T Y++   +++A  LFK M  E VKL
Sbjct: 243 ALVNFYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKL 301

Query: 314 NVVTWSAVI-----------------------------AG------YAQRGHGHEALDVF 338
           + +   AV+                             AG      Y + G   EA++VF
Sbjct: 302 DRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVF 361

Query: 339 RQ-------------------------------MQFCGLEPNVVTLVSLLSGCASVGALL 367
           R                                MQ  G++ + ++ V+ L  CA+  AL 
Sbjct: 362 RSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALA 421

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G+  H + ++  +        D+M+ NA++DMY  CKS D A  +F A+  K RD  +W
Sbjct: 422 KGRMIHSWIVESGIKA------DVMLDNAILDMYGSCKSTDDASRVFRAM--KVRDQVSW 473

Query: 428 TVMIGSY-SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
             MI +Y +Q   +++AL LF QM  Q     P+  +   AL ACA  A+L  G+ +H  
Sbjct: 474 NAMITAYAAQPRLSSEALLLFQQM--QLHGFMPDVISFVAALSACAAQASLAEGKLLHDR 531

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           +     E  +  VAN +++MY++SG +  AR +F  +   +V+SW  +++ +  HG  D+
Sbjct: 532 IRETGLESNMT-VANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQ 590

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-GISARAEHYACI 605
               F +M  EG  P+ VTF+ ++ ACSH G+V  G++ F S+  +F  IS RAEHY C+
Sbjct: 591 VLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCM 650

Query: 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665
           VDL+ RA +LD A + I   P++P  +I   +L   ++H +VE    +A  L+EL  ++ 
Sbjct: 651 VDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRS 710

Query: 666 GSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725
            +Y +LSN+Y   G+  + A+IR LM    ++K P  S +  K     FF GD T+ ++ 
Sbjct: 711 AAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTP 770

Query: 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPI 785
           +I E L  L   +   GY P T+  LHDV DE+K  LL  HSEKLA+A+G+++TAPGT +
Sbjct: 771 EILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSL 830

Query: 786 RITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           RI KNLR+CGDCH+A  FIS I   EI++RDS+RFHHF  G+C+C  YW
Sbjct: 831 RIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 221/514 (42%), Gaps = 78/514 (15%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VHA IC S  D   F+ + L+ MY  C +L  A+  FD M    + D ++W  ++ A
Sbjct: 17  GKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRM---PVQDALTWARLIRA 73

Query: 214 YAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSR------------- 258
           + Q GD+E  L LF  M   G   V  + V+++ A SA   L    R             
Sbjct: 74  HGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMES 133

Query: 259 ------------GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                       GK C  +E+A+KVF+ ++ K VV WNAM+T Y++    E A  +F  M
Sbjct: 134 DHYVSTTLLHMYGK-CSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAM 192

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             E VK             A+R                      +T + +L  C+ +  L
Sbjct: 193 LLEGVK-------------AER----------------------ITFIGVLDACSKLKDL 217

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            + K       +R    +  H  D     AL++ Y  C  ++ A   F A +    ++  
Sbjct: 218 EVAKLVKLCVEER----EHDHLHDSSFATALVNFYGSCGDLEQA---FRAFSRHRLELIL 270

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
            T MI  Y+Q    ++AL LF  M  +   VK +       L AC+    L  GR IH +
Sbjct: 271 ATAMITQYTQRERWDEALELFKVMLLEG--VKLDRIACMAVLNACSGPRGLEEGRIIHGF 328

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDK 546
           +   +++  +    N LI+MY + G ++ A  VF +++ R+V+SW +++  +G H    +
Sbjct: 329 MREIRFDRHVN-AGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPE 387

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606
           A      M+ +G+  D ++F+  L  C+ S  + +G +   S   E GI A       I+
Sbjct: 388 ALHLLHLMQLDGVKADKISFVNALPLCATSEALAKG-RMIHSWIVESGIKADVMLDNAIL 446

Query: 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           D+ G     D+A  +   M +    + W A++  
Sbjct: 447 DMYGSCKSTDDASRVFRAMKVRDQ-VSWNAMITA 479



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 155/377 (41%), Gaps = 47/377 (12%)

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           LL   A   +L LGKE H    K  +   G    DL     L+ MY  C S+  A+  FD
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMD-RGPFMGDL-----LVRMYVDCGSLIDAKACFD 57

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC-ARL 474
            +  +  D  TW  +I ++ Q G +  AL LF  M  Q + V P        L AC A  
Sbjct: 58  RMPVQ--DALTWARLIRAHGQIGDSEQALHLFRSM--QLEGVAPVNRNFVAVLGACSADP 113

Query: 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSL 534
             L  GR+IH  VLR        +V+  L+ MY +   ++ AR VFD ++ + VV W ++
Sbjct: 114 ELLEEGRRIHG-VLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAM 172

Query: 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-------------------H 575
           +T Y      ++A   F  M  EG+  + +TF+ +L ACS                   H
Sbjct: 173 ITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREH 232

Query: 576 SGMVDQGLK------YFDSMSKEFGISARAEHY------ACIVDLLGRANRLDEAVELIE 623
             + D          Y      E    A + H         ++    +  R DEA+EL +
Sbjct: 233 DHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFK 292

Query: 624 GMPMEPTP---IIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIYANAG 679
            M +E      I  +A+LN C     +E G +    + E+  ++   +   L N+Y   G
Sbjct: 293 VMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCG 352

Query: 680 RWKDVARIRSLMKHTGV 696
             ++   +   M+H  V
Sbjct: 353 SLEEAVEVFRSMQHRDV 369


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/671 (35%), Positives = 366/671 (54%), Gaps = 29/671 (4%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N+   N+L+ +Y +C  L  AR LFDEM    +  +VS+N ++  Y  SG+    + LF 
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEM---SLRSVVSYNVLMGGYLHSGEHLEVVKLFK 110

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMV 287
            M   +  Q +       LSACA  G    G QC G + +   VF    VK     +++V
Sbjct: 111 NMVSSL-YQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHF-VK-----SSLV 163

Query: 288 TGYSRIGSFEDAFALFK----KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
             YS+    + A  + +     +  +N   +   +++V+    + G   EA++V  +M  
Sbjct: 164 HMYSKCFHVDLALQVLESEHGNIDNDN---DAFCYNSVLNALVESGRLGEAVEVLGRMVD 220

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+  + VT VS++  C  +  L LG + H   +K      G    D+ V + L+DM+ K
Sbjct: 221 EGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLK------GGLTFDVFVGSMLVDMFGK 274

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C  V  AR +FD +  +NR+V  WT ++ +Y QNG   + L L   M ++  +   N FT
Sbjct: 275 CGDVLSARKVFDGL--QNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTM--SNEFT 330

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
            +  L A A +AALR G  +HA V +   +  +  V N LI+MYS+ G ID++  VF ++
Sbjct: 331 FAVLLNAFAGMAALRHGDLLHARVEKLGIKNRV-IVGNALINMYSKCGCIDSSYDVFFDM 389

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           + R++++W +++ GY  HGLG +A   F  M   G  P+ VTF+ +L AC+H  +V++G 
Sbjct: 390 RNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGF 449

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            Y + + K F +    EHY C+V +L RA  L+EA   +    ++   + W  LLN C I
Sbjct: 450 YYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNI 509

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N  LG   A  +L+++    G+YTLLSN+YA A  W  V  IR +M+   VKK PG S
Sbjct: 510 HRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVS 569

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++ +     F      HP+  +IY  +  L++ IK +GYVP     LHDV+DE+K   L
Sbjct: 570 WIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYL 629

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLA+AYG++      PIR+ KNLRIC DCH+A+  IS + N  II+RD++RFHHF
Sbjct: 630 NYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHF 689

Query: 824 KEGSCTCKGYW 834
           ++G+CTC  +W
Sbjct: 690 RDGTCTCTDHW 700



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 142/568 (25%), Positives = 226/568 (39%), Gaps = 102/568 (17%)

Query: 56  IHQQIIVQNLTHVPPSH----------LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           IH Q++++N +    S+          LI  YV  +    A  L   +S    SV  +N 
Sbjct: 34  IHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLR--SVVSYNV 91

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           L+   +         +LF  M+   + P+EY F  VL AC        G   H  +   G
Sbjct: 92  LMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFG 151

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ--PGICDIVSWNTIVAAYAQSGDAEGG 223
              + FV ++L+ MY++C  +  A Q+ +          D   +N+++ A  +SG     
Sbjct: 152 LVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEA 211

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------------- 261
           + +  RM  D  V  D V+ V+ +  C  +     G Q                      
Sbjct: 212 VEVLGRMV-DEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVD 270

Query: 262 ----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
               CG +  A+KVF+ ++ ++VV W +++T Y + G FE+   L   M +E        
Sbjct: 271 MFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDRE-------- 322

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
                                      G   N  T   LL+  A + AL  G   H    
Sbjct: 323 ---------------------------GTMSNEFTFAVLLNAFAGMAALRHGDLLHARVE 355

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA-RVMFDAIAPKNRDVATWTVMIGSYSQ 436
           K  +       + ++V NALI+MY+KC  +D +  V FD    +NRD+ TW  MI  YSQ
Sbjct: 356 KLGI------KNRVIVGNALINMYSKCGCIDSSYDVFFDM---RNRDIITWNAMICGYSQ 406

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEM 494
           +G    AL LF  M    +   PN  T    L ACA LA +  G     Y L    ++  
Sbjct: 407 HGLGKQALLLFQDMLSAGEC--PNHVTFVGVLSACAHLALVNEG----FYYLNQLMKHFK 460

Query: 495 LIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMH---GLGDKAH 548
           + P + +  C++ +  R+G ++ A       + + +VV+W  L+    +H    LG K  
Sbjct: 461 VEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIA 520

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHS 576
               QM    +     T L  +YA + S
Sbjct: 521 ETILQMDPRDMGT--YTLLSNMYAKARS 546


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 383/736 (52%), Gaps = 31/736 (4%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAA 76
           L   +K+     +P       +++ C   KS+    ++H+ + +  L       S LI  
Sbjct: 43  LLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKL 102

Query: 77  YVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           Y  +   S A  L   I P   SV W N ++   V+     NA ++FL+M      P+  
Sbjct: 103 YAENGHLSDAQYLFDNI-PQKDSVLW-NVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSV 160

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           TF  VL  C        G+ +H +    G + +  V N L+AMY++C  L  AR+LFD +
Sbjct: 161 TFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTL 220

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            Q    D+VSWN I++ Y Q+G       LF  M     ++ D ++  + L     L + 
Sbjct: 221 PQS---DLVSWNGIISGYVQNGLMGEAEHLFRGMI-SAGIKPDSITFASFLPCVNELLSL 276

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
              K     E    +     V DV   +A++  Y +    E A    +K   ++   + V
Sbjct: 277 KHCK-----EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMA----QKNLCQSSSFDTV 327

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
             + +I+GY   G   EAL+ FR +    ++P  VT  S+    A + AL LGKE H   
Sbjct: 328 VCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSI 387

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           IK  L       +   V +A++DMYAKC  +D+A  +F+ I  K  D   W  MI S SQ
Sbjct: 388 IKTKLD------EKCHVGSAILDMYAKCGRLDLACRVFNRITEK--DAICWNSMITSCSQ 439

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +A+ LF QM  +    + +  ++S AL ACA L AL +G++IH  +++      +
Sbjct: 440 NGRPGEAINLFRQMGMEG--TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDL 497

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
            +  + LIDMY++ G+++ +R VFD ++++N VSW S+++ YG HG   +    F +M +
Sbjct: 498 -YAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLR 556

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
            G+ PD VTFL ++ AC H+G VD+G++Y+  M++E+GI AR EHYAC+ D+ GRA RL 
Sbjct: 557 NGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLH 616

Query: 617 EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
           EA E I  MP  P   +W  LL  C IH NVEL E+A+  L +L+    G Y LL+N+ A
Sbjct: 617 EAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQA 676

Query: 677 NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
            AG+W+ V ++RS+MK  GV+K PG SW++    T  F   D +HP + +IY +L  L+ 
Sbjct: 677 GAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLL 736

Query: 737 RIKAMGYVPQTSFALH 752
            +K  GYVPQ    +H
Sbjct: 737 ELKKEGYVPQLYLPMH 752



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/574 (26%), Positives = 267/574 (46%), Gaps = 82/574 (14%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +IR    +   + A   +L+M+  G  PD+YTFP+V+KAC  L S + G  VH  + 
Sbjct: 26  WNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVN 85

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   +VFV ++L+ +YA    LS A+ LFD + Q    D V WN ++  Y ++GD+  
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQK---DSVLWNVMLNGYVKNGDSGN 142

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACAS-----LGTWSRG------------------ 259
            + +F  M    +++ + V+    LS CAS     LGT   G                  
Sbjct: 143 AIKIFLEMRHS-EIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLL 201

Query: 260 ---KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
               +C  ++ A+K+F+ +   D+VSWN +++GY + G   +A  LF             
Sbjct: 202 AMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLF------------- 248

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
                                 R M   G++P+ +T  S L     + +L   KE H Y 
Sbjct: 249 ----------------------RGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI 286

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           I+  + +      D+ + +ALID+Y KC+ V++A+   +     + D    T MI  Y  
Sbjct: 287 IRHAVVL------DVFLKSALIDIYFKCRDVEMAQK--NLCQSSSFDTVVCTTMISGYVL 338

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +AL  F  + Q+   +KP + T S    A A LAAL  G+++H  +++ + +   
Sbjct: 339 NGKNKEALEAFRWLVQER--MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKC 396

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             V + ++DMY++ G +D A  VF+ + +++ + W S++T    +G   +A   F QM  
Sbjct: 397 -HVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA--CIVDLLGRANR 614
           EG   D V+    L AC++   +  G +    M K      R++ YA   ++D+  +   
Sbjct: 456 EGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG---PLRSDLYAESSLIDMYAKCGN 512

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           L+ +  + + M  E   + W ++++    H +++
Sbjct: 513 LNFSRRVFDRM-QEKNEVSWNSIISAYGNHGDLK 545



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 116/242 (47%), Gaps = 9/242 (3%)

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY +  S+  A+ +F  +  +    + W  MI  ++  G  N AL  + +M      V P
Sbjct: 1   MYVRTGSLKDAKNLFYTL--QLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG--VSP 56

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYV-LRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           + +T    + AC  L +++ G+ +H  V L    E +  FV + LI +Y+ +G +  A+ 
Sbjct: 57  DKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDV--FVGSSLIKLYAENGHLSDAQY 114

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +FDN+ Q++ V W  ++ GY  +G    A   F +MR   + P+ VTF  +L  C+   M
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAM 174

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           +D G +    ++   G+   +     ++ +  +   L  A +L + +P +   + W  ++
Sbjct: 175 LDLGTQ-LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGII 232

Query: 639 NG 640
           +G
Sbjct: 233 SG 234


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 341/576 (59%), Gaps = 50/576 (8%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CGMM +A ++F+ M  ++ VSW  +++GY   G++ +AF LF  MR+E           
Sbjct: 179 KCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYD-------- 230

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
                                  CG  P   T  +++   A +  +  G++ H   IK  
Sbjct: 231 -----------------------CG--PR--TFATMIRASAGLEIIFPGRQLHSCAIKAG 263

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L        D+ V  ALIDMY+KC S++ A  +FD +  K   +  W  +I  Y+ +G +
Sbjct: 264 LG------QDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKT--IVGWNSIIAGYALHGYS 315

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
            +AL L+ +M  +D  VK + FT S  +  C+RLA++   +Q+HA ++RN + + +  VA
Sbjct: 316 EEALDLYHEM--RDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDV--VA 371

Query: 501 N-CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           N  L+D YS+ G +D AR VFD +  RN++SW +L+ GYG HG G++A   F++M +EG+
Sbjct: 372 NTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGM 431

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+ VTFL +L ACS SG+ ++G + F SM+++  +  RA H+AC+++LLGR   LDEA 
Sbjct: 432 MPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAY 491

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            LI   P +PT  +W ALL  CR+H N+ELG+ AA +L  +E EK  +Y +L NIY ++G
Sbjct: 492 ALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSG 551

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           + K+ A +   +K  G++  P CSW++       F  GD+ H Q +K+   +  L+  I 
Sbjct: 552 KLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNIS 611

Query: 740 AMGYVPQT-SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
            +GYVP+  +F L DVD+ E+   ++ HSEKLA+AYG+L T   TP++I ++ RIC DCH
Sbjct: 612 KLGYVPEEQNFMLPDVDENEEKIRMY-HSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCH 670

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           S I  I+MI   EI++RD++RFHHF++GSC+C  YW
Sbjct: 671 SVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 215/496 (43%), Gaps = 83/496 (16%)

Query: 127 MRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTL 186
           +  G+H    T+  ++ AC  L S R    +   +  +GF+ + ++ N ++ M+ +C  +
Sbjct: 124 LEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMM 183

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD------- 239
             A +LFDEM  P   + VSW TI++ Y  SG+      LF  M  +    G        
Sbjct: 184 IDACRLFDEM--PAR-NAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMI 240

Query: 240 ----GVSLV-----------------NALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
               G+ ++                 +   +CA +  +S+   CG +E+A  VF+ M  K
Sbjct: 241 RASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSK---CGSLEDAHCVFDEMPDK 297

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            +V WN+++ GY+  G  E+A  L+ +MR   VK++  T+S +I                
Sbjct: 298 TIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIII---------------- 341

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
                                C+ + ++   K+ H   ++    +      D++   AL+
Sbjct: 342 -------------------RICSRLASVARAKQVHASLVRNGFGL------DVVANTALV 376

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y+K   VD AR +FD ++ +N  + +W  +I  Y  +G   +A+ +F +M ++  +  
Sbjct: 377 DFYSKWGKVDDARHVFDRMSCRN--IISWNALIAGYGNHGHGEEAIDMFEKMLREGMM-- 432

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
           PN  T    L AC+       G +I   + R+           C+I++  R G +D A  
Sbjct: 433 PNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYA 492

Query: 519 VFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT-FLVLLYACSHS 576
           +      Q     W +L+    +HG  +   +A +++   G+ P+ ++ ++VLL   + S
Sbjct: 493 LIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLY--GMEPEKLSNYIVLLNIYNSS 550

Query: 577 GMVDQGLKYFDSMSKE 592
           G + +    F ++ ++
Sbjct: 551 GKLKEAADVFQTLKRK 566



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 30/249 (12%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           AFRLF+ M    +     TF  +++A   L     G  +H+    +G   ++FV  AL+ 
Sbjct: 217 AFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALID 276

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY++C +L  A  +FDEM       IV WN+I+A YA  G +E  L L+  M  D  V+ 
Sbjct: 277 MYSKCGSLEDAHCVFDEMPDK---TIVGWNSIIAGYALHGYSEEALDLYHEMR-DSGVKM 332

Query: 239 DGVSLVNALSACASLGTWSRGKQC--------------------------GMMEEAKKVF 272
           D  +    +  C+ L + +R KQ                           G +++A+ VF
Sbjct: 333 DHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVF 392

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
           +RM  ++++SWNA++ GY   G  E+A  +F+KM +E +  N VT+ AV++  +  G   
Sbjct: 393 DRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFE 452

Query: 333 EALDVFRQM 341
              ++F+ M
Sbjct: 453 RGWEIFQSM 461



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 24/274 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN++I         + A  L+ +M   G   D +TF  +++ C  L S      VH
Sbjct: 298 TIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVH 357

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  +GF  +V    AL+  Y++   +  AR +FD M      +I+SWN ++A Y   G
Sbjct: 358 ASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRM---SCRNIISWNALIAGYGNHG 414

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM--- 275
             E  + +F +M  +  +  + V+ +  LSAC+  G + RG +         +F+ M   
Sbjct: 415 HGEEAIDMFEKMLRE-GMMPNHVTFLAVLSACSISGLFERGWE---------IFQSMTRD 464

Query: 276 -KVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            KVK   + +  M+    R G  ++A+AL   +R+   +     W+A++   A R HG+ 
Sbjct: 465 HKVKPRAMHFACMIELLGREGLLDEAYAL---IRKAPFQPTANMWAALLR--ACRVHGNL 519

Query: 334 ALDVFRQMQFCGLEPNVVT-LVSLLSGCASVGAL 366
            L  F   +  G+EP  ++  + LL+   S G L
Sbjct: 520 ELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKL 553



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           DAL +F ++F+ +        T    + AC  L ++R  +++  Y++ N +E    ++ N
Sbjct: 114 DALEMF-EIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEP-DQYMRN 171

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            ++ M+ + G +  A  +FD +  RN VSW ++++GY   G   +A   F  MR+E    
Sbjct: 172 RVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDC 231

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
              TF  ++ A +   ++  G +   S + + G+         ++D+  +   L++A  +
Sbjct: 232 GPRTFATMIRASAGLEIIFPG-RQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCV 290

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVE 648
            + MP + T + W +++ G  +H   E
Sbjct: 291 FDEMP-DKTIVGWNSIIAGYALHGYSE 316


>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
 gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
          Length = 739

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 392/719 (54%), Gaps = 53/719 (7%)

Query: 147 ELPSSRCGSSVHAVIC---SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICD 203
           EL ++RC ++V  + C   + G D++ ++ N L+ +Y +   L  A   FD +      +
Sbjct: 43  ELRNARCLAAVEELHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAK---N 99

Query: 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC- 262
           + SW  +++A+AQ+G     L+LF +M  +  V+ + V+L   L  C+S+   + G+   
Sbjct: 100 VFSWTIVISAFAQNGHHREALVLFRQMERE-GVKANEVTLAAVLGICSSIKDLAGGRSIH 158

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  AKK        DVV  NA+V  YS+ GS  +A A F    QE V  +VV+W+ +I
Sbjct: 159 GRVIAAKK--------DVVIGNALVNMYSKCGSLREARASF----QEMVVRDVVSWTTMI 206

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
              ++ G  +EA+++F +M    + PN ++ +++L  C++     LG  +    I   ++
Sbjct: 207 TALSEHGEWNEAVEIFWEMVSENVAPNEISCLAVLGACSN-----LGDRSQVRVIHEFIA 261

Query: 383 VDGSHPDD-LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             G   D  L+V N LI  Y +C S   AR +FD++    R+  +W  MI +Y+ N  A 
Sbjct: 262 SGGLELDKKLVVANTLIHTYGRCGSPSDARRVFDSLQHSARNAVSWASMIAAYTSNEQAK 321

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
             + L+ +M Q+++  K +     C L AC+ L+AL+ GRQ+H  ++   +   +P  A 
Sbjct: 322 AGVELYQEMIQREESKKMDPVAYLCVLEACSSLSALKVGRQVHEEIVAAGFGDELPL-AG 380

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            +++MY + G +  AR VFD +K RN+++W S+M GY  HG   +A   F+    +G+ P
Sbjct: 381 AIVNMYCKCGSLVEAREVFDGMKARNMIAWNSMMGGYTQHGHPKRALQLFELACLDGVLP 440

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           D +TF+ +L ACSH+GMV  G+ +F S+  +FG+    +HY C+VD+LGRA  LD A  L
Sbjct: 441 DEITFVTILTACSHAGMVKPGVWHFGSIRADFGMEPSVDHYVCMVDMLGRAGWLDAAERL 500

Query: 622 IEGMPMEPTP----IIWVALLNGCRIHANVELGELAANRLLELE---------------- 661
           +E MP    P    + W+ALL  C++H +V+     ++ L   +                
Sbjct: 501 VERMPAFSNPADEFVPWMALLASCKVHTDVKRAARISSVLSAKKKKLLSSSSSGSGSWHL 560

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK-----KRPGCSWVQGKEGTATFFV 716
                   +LSNIYA A +W+++  +R+ +     K     ++ GCS+++ +     F  
Sbjct: 561 KNSAAPLVMLSNIYAQAKKWEEMTGVRNEITEEWSKGMITSRQRGCSFIEVEGAIHEFVA 620

Query: 717 GD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 775
           G    HP+ + I   +  L + IK+ GYVP TS  +HDV++ EK  +L +HSE++A+A+G
Sbjct: 621 GKLHLHPEHKGIDSEMKRLEELIKSAGYVPDTSVVMHDVEEAEKEGVLHQHSERMAIAFG 680

Query: 776 ILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           ++     T +R+  NLRIC DCH+A+  IS  +  EI++RD+ RFHHF  G C+C+ YW
Sbjct: 681 LMRGGSDTIVRVVNNLRICSDCHAAVKLISKTVGREILVRDTRRFHHFASGECSCQDYW 739



 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 245/518 (47%), Gaps = 54/518 (10%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LR  + L  V  +H ++I Q L   T++  ++L+  Y        A +   RI+    +V
Sbjct: 44  LRNARCLAAVEELHCRMIAQGLDADTYLG-NNLVRVYGKFGGLDRAWAAFDRIAAK--NV 100

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F W  +I    +      A  LF QM R G   +E T   VL  C  +     G S+H  
Sbjct: 101 FSWTIVISAFAQNGHHREALVLFRQMEREGVKANEVTLAAVLGICSSIKDLAGGRSIHGR 160

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           + ++  D  V + NAL+ MY++C +L  AR  F EM    + D+VSW T++ A ++ G+ 
Sbjct: 161 VIAAKKD--VVIGNALVNMYSKCGSLREARASFQEMV---VRDVVSWTTMITALSEHGEW 215

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------QCGMMEEAKKVFER 274
              + +F  M  +  V  + +S +  L AC++LG  S+ +        G +E  KK    
Sbjct: 216 NEAVEIFWEMVSE-NVAPNEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKK---- 270

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
                +V  N ++  Y R GS  DA  +F  +  ++   N V+W+++IA Y         
Sbjct: 271 -----LVVANTLIHTYGRCGSPSDARRVFDSL--QHSARNAVSWASMIAAYTSNEQAKAG 323

Query: 335 LDVFRQM----QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390
           ++++++M    +   ++P  V  + +L  C+S+ AL +G++ H         V     D+
Sbjct: 324 VELYQEMIQREESKKMDP--VAYLCVLEACSSLSALKVGRQVHEEI------VAAGFGDE 375

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450
           L +  A+++MY KC S+  AR +FD +  K R++  W  M+G Y+Q+G    AL LF ++
Sbjct: 376 LPLAGAIVNMYCKCGSLVEAREVFDGM--KARNMIAWNSMMGGYTQHGHPKRALQLF-EL 432

Query: 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYS 508
              D ++ P+  T    L AC+    ++ G   H   +R  + M  P V +  C++DM  
Sbjct: 433 ACLDGVL-PDEITFVTILTACSHAGMVKPG-VWHFGSIRADFGME-PSVDHYVCMVDMLG 489

Query: 509 RSGDIDTARVVFDNL-----KQRNVVSWTSLMTGYGMH 541
           R+G +D A  + + +          V W +L+    +H
Sbjct: 490 RAGWLDAAERLVERMPAFSNPADEFVPWMALLASCKVH 527



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 13/221 (5%)

Query: 43  LLRQCKSL---TQVYLIHQQIIVQNL----THVPPSHLIAAYVSHNAPSPALSLLQRISP 95
           +L  C +L   +QV +IH+ I    L      V  + LI  Y    +PS A  +   +  
Sbjct: 240 VLGACSNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSDARRVFDSLQH 299

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVLKACGELPSSRC 153
           S  +   W ++I              L+ +M++R      D   +  VL+AC  L + + 
Sbjct: 300 SARNAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSSLSALKV 359

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  VH  I ++GF   + +  A++ MY +C +L  AR++FD M      ++++WN+++  
Sbjct: 360 GRQVHEEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKAR---NMIAWNSMMGG 416

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           Y Q G  +  L LF     D  V  D ++ V  L+AC+  G
Sbjct: 417 YTQHGHPKRALQLFELACLD-GVLPDEITFVTILTACSHAG 456


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/502 (42%), Positives = 302/502 (60%), Gaps = 23/502 (4%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L+PN  T  SL   CAS   L  G   H + +K +       P D  V N+L++ YAK  
Sbjct: 100 LQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQP-----PYDPFVQNSLLNFYAKYG 154

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG-------------ANDALALFPQMFQ 452
            + V+R +FD I+    D+ATW  M+ +Y+Q+               + +AL LF  M  
Sbjct: 155 KLCVSRYLFDQISEP--DLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDM-- 210

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           Q   +KPN  TL   + AC+ L AL  G   H YVLRN  + L  FV   L+DMYS+ G 
Sbjct: 211 QLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLK-LNRFVGTALVDMYSKCGC 269

Query: 513 IDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572
           ++ A  +FD L  R+   + +++ G+ +HG G++A   +  M+ E L PDG T +V ++A
Sbjct: 270 LNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFA 329

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPI 632
           CSH G+V++GL+ F+SM    G+  + EHY C++DLLGRA RL EA E ++ MPM+P  I
Sbjct: 330 CSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAI 389

Query: 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692
           +W +LL   ++H N+E+GE A   L+ELE E  G+Y LLSN+YA+ GRW DV R+R LMK
Sbjct: 390 LWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMK 449

Query: 693 HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
             GV K PG S V+       F  GD+ HP S++IY  +  + +R+   G+ P+TS  L 
Sbjct: 450 DHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLF 509

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           DV++E+K D L  HSE+LA+A+ ++ ++   PIRI KNLR+CGDCH+    IS     +I
Sbjct: 510 DVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDI 569

Query: 813 ILRDSNRFHHFKEGSCTCKGYW 834
           I+RD NRFHHFK+GSC+C  YW
Sbjct: 570 IVRDRNRFHHFKDGSCSCLDYW 591



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 208/453 (45%), Gaps = 50/453 (11%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVF 101
           L++C +L  +  +H Q++   L+      SHL+    S  A + A ++   I P+P ++F
Sbjct: 12  LQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNT-SSKFASTYAFTIFNHI-PNP-TLF 68

Query: 102 WWNALI----RRAVRLRLPDNAFRLFLQMM-RRGWHPDEYTFPFVLKACGELPSSRCGSS 156
            +N LI      + ++ L   AF L+  ++  +   P+ +TFP + KAC   P  + G  
Sbjct: 69  LYNTLISSLTHHSDQIHL---AFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPP 125

Query: 157 VHAVI---CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           +HA +       +D   FV N+L+  YA+   L  +R LFD++ +P   D+ +WNT++AA
Sbjct: 126 LHAHVLKFLQPPYDP--FVQNSLLNFYAKYGKLCVSRYLFDQISEP---DLATWNTMLAA 180

Query: 214 YAQSG----------DAE---GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
           YAQS           DA+     L LF  M    +++ + V+LV  +SAC++LG  S+G 
Sbjct: 181 YAQSASHVSYSTSFEDADMSLEALHLFCDMQLS-QIKPNEVTLVALISACSNLGALSQGA 239

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
                     +   +K+   V   A+V  YS+ G    A  LF ++       +   ++A
Sbjct: 240 WA----HGYVLRNNLKLNRFVG-TALVDMYSKCGCLNLACQLFDELSDR----DTFCYNA 290

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I G+A  GHG++AL+++R M+   L P+  T+V  +  C+  G +  G E      + +
Sbjct: 291 MIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLE----IFESM 346

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
             V G  P  L     LID+  +   +  A      + P   +   W  ++G+   +G  
Sbjct: 347 KGVHGMEP-KLEHYGCLIDLLGRAGRLKEAEERLQDM-PMKPNAILWRSLLGAAKLHGNL 404

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
               A    + + +     N   LS    +  R
Sbjct: 405 EMGEAALKHLIELEPETSGNYVLLSNMYASIGR 437



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 193/419 (46%), Gaps = 46/419 (10%)

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           L+ C  L + +    VHA + ++G     +  + L+   ++  + +YA  +F+ +  P  
Sbjct: 12  LQKCHNLNTLK---QVHAQMLTTGLSFQTYYLSHLLNTSSKFAS-TYAFTIFNHIPNP-- 65

Query: 202 CDIVSWNTIVAAYAQSGDA-EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             +  +NT++++     D       L+  +     +Q +  +  +   ACAS   W    
Sbjct: 66  -TLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACAS-HPW---L 120

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q G    A  +       D    N+++  Y++ G    +  LF ++ + ++     TW+ 
Sbjct: 121 QHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDL----ATWNT 176

Query: 321 VIAGYAQRGHGH--------------EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
           ++A YAQ    H              EAL +F  MQ   ++PN VTLV+L+S C+++GAL
Sbjct: 177 MLAAYAQSA-SHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGAL 235

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
             G   H Y ++  L ++        V  AL+DMY+KC  +++A  +FD ++  +RD   
Sbjct: 236 SQGAWAHGYVLRNNLKLNR------FVGTALVDMYSKCGCLNLACQLFDELS--DRDTFC 287

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           +  MIG ++ +G  N AL L+  M  +D  + P+  T+   + AC+    +  G +I  +
Sbjct: 288 YNAMIGGFAVHGHGNQALELYRNMKLED--LVPDGATIVVTMFACSHGGLVEEGLEI--F 343

Query: 487 VLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG 542
                   + P + +  CLID+  R+G +  A     ++  + N + W SL+    +HG
Sbjct: 344 ESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHG 402



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A +L+  +    K ++PN+FT      ACA    L+ G  +HA+VL+       PFV N 
Sbjct: 87  AFSLYNHILTH-KTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNS 145

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG-------------LGDKAHW 549
           L++ Y++ G +  +R +FD + + ++ +W +++  Y                 +  +A  
Sbjct: 146 LLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALH 205

Query: 550 AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
            F  M+   + P+ VT + L+ ACS+ G + QG
Sbjct: 206 LFCDMQLSQIKPNEVTLVALISACSNLGALSQG 238


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 317/535 (59%), Gaps = 36/535 (6%)

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+ VI  Y +R     AL+V+ Q++    E +     S+L  C  V    LGKE H + +
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW----TVMIGS 433
           K+ L        D+ V NAL+ MY +C  V+ AR++FD +    RDV +W    T ++  
Sbjct: 187 KKGLD------RDVFVGNALMLMYGECACVEYARLVFDKMM--ERDVVSWIPTTTALLDM 238

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y++ G     L L  Q+F  + L +    + +  +  C R   L  G ++    +R Q E
Sbjct: 239 YAKCG----HLGLARQLF--NGLTQKTVVSWTAMIAGCIRSNRLEEGTKL---FIRMQEE 289

Query: 494 MLIP---------------FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
            + P                +   L+DMY++ GDI+ A  +F     R++  W +++TG+
Sbjct: 290 NIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF 349

Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
            MHG G++A   F +M ++G+ P+ +TF+ LL+ACSH+G+V +G K F+ M   FG+  +
Sbjct: 350 AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQ 409

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHY C+VDLLGRA  LDEA E+I+ MP++P  I+W AL+  CR+H N +LGELAA +LL
Sbjct: 410 IEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLL 469

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           E+E E  G   L+SNIYA A RW D A +R  MK  G+KK PG S ++       F +GD
Sbjct: 470 EIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGD 529

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
           ++HPQ ++I E+LA + +++   GYVP TS  L ++D+EEK   L  HSEKLA+A+G+++
Sbjct: 530 QSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLIS 589

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           TAP TPIRI KNLR+C DCH+A   +S I    II+RD NRFHHF+EG C+C  Y
Sbjct: 590 TAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 175/376 (46%), Gaps = 36/376 (9%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           +H+I  +  H    P       +SPS      WN +I    +   P NA  ++ Q+ +  
Sbjct: 99  AHIIKTHFHHALQIPLNDFPSGLSPSA----QWNFVITSYTKRNQPRNALNVYAQLRKMD 154

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
           +  D +  P VLKACG++  ++ G  +H  +   G D +VFV NALM MY  C  + YAR
Sbjct: 155 FEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYAR 214

Query: 191 QLFDEMFQPGICDIVSW----NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
            +FD+M +    D+VSW      ++  YA+ G       LF  +T     Q   VS    
Sbjct: 215 LVFDKMMER---DVVSWIPTTTALLDMYAKCGHLGLARQLFNGLT-----QKTVVSWTAM 266

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVF---------ERMKVKDVVSWNAMVTGYSRIGSFE 297
           ++ C        G +  +  + + +F         ER++V D +   A+V  Y++ G   
Sbjct: 267 IAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERVEV-DCILNTALVDMYAKCGDIN 325

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
            A  LF     E +  ++  W+A+I G+A  G+G EALD+F +M+  G++PN +T + LL
Sbjct: 326 AAGRLFI----EAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 381

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C+  G +  GK+      ++++   G  P  +     ++D+  +   +D A  M  ++
Sbjct: 382 HACSHAGLVTEGKK----LFEKMVHTFGLVP-QIEHYGCMVDLLGRAGLLDEAHEMIKSM 436

Query: 418 APKNRDVATWTVMIGS 433
            P   +   W  ++ +
Sbjct: 437 -PIKPNTIVWGALVAA 451



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 33/291 (11%)

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
           A W  +I SY++     +AL ++ Q+ + D  V  + F     L AC +++  + G++IH
Sbjct: 125 AQWNFVITSYTKRNQPRNALNVYAQLRKMDFEV--DNFMAPSVLKACGQVSWTQLGKEIH 182

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSW----TSLMTGYGM 540
            +VL+   +  + FV N L+ MY     ++ AR+VFD + +R+VVSW    T+L+  Y  
Sbjct: 183 GFVLKKGLDRDV-FVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAK 241

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE-------F 593
            G    A   F+ + ++ +    V++  ++  C  S  +++G K F  M +E        
Sbjct: 242 CGHLGLARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT 297

Query: 594 GISARAEHYACI-----VDLLGRANRLDEAVEL-IEGMPMEPTPIIWVALLNGCRIHANV 647
            ++       CI     VD+  +   ++ A  L IE +  +    +W A++ G  +H   
Sbjct: 298 MLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC--MWNAIITGFAMHG-- 353

Query: 648 ELGELAANRLLELESE--KDGSYTLLSNIYA--NAGRWKDVARIRSLMKHT 694
             GE A +   E+E +  K    T +  ++A  +AG   +  ++   M HT
Sbjct: 354 -YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 403


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 374/682 (54%), Gaps = 25/682 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I       +    F +F  M   G  PD  T   ++  C        GS +H++  
Sbjct: 214 WNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCL 273

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S  DS+V V NAL+ MY+    LS A  LF  M +    D++SWNT++++Y Q+ ++  
Sbjct: 274 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRR---DLISWNTMISSYVQNCNSTD 330

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L    ++        + ++  +AL AC+S G    GK    +     V +    ++++ 
Sbjct: 331 ALKTLGQLF-HTNESPNHLTFSSALGACSSPGALIDGKMVHAI-----VLQLSLQRNLLV 384

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            N+++T Y +  S EDA  +F+ M   ++    V+++ +I GYA    G +A+ VF  M+
Sbjct: 385 GNSLITMYGKCNSMEDAEKVFQSMPTHDI----VSYNVLIGGYAVLEDGTKAMQVFSWMR 440

Query: 343 FCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
             G++PN +T++++    AS   L   G+  H Y I+           D  V N+LI MY
Sbjct: 441 SAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRT------GFLSDEYVANSLITMY 494

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           AKC +++ +  +F++I   N+++ +W  +I +  Q G   +AL LF  M  Q    K + 
Sbjct: 495 AKCGNLESSTNIFNSIT--NKNIVSWNAIIAANVQLGHGEEALKLFIDM--QHAGNKLDR 550

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
             L+  L +CA LA+L  G Q+H   +++  +    +V N  +DMY + G +D    V  
Sbjct: 551 VCLAECLSSCASLASLEEGMQLHGLGMKSGLDS-DSYVVNAAMDMYGKCGKMDEMLQVVP 609

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
           +   R    W +L++GY  +G   +A   F QM   G  PD VTF+ LL ACSH+G+VD+
Sbjct: 610 DQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDK 669

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G+ Y++SM+  FG+S   +H  CIVDLLGR  R  EA + IE MP+ P  +IW +LL+  
Sbjct: 670 GIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSS 729

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           R H N+E+G   A +LLEL+   D +Y LLSN+YA   RW DV ++RS MK   + KRP 
Sbjct: 730 RTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPA 789

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
           CSW++ K   +TF +GDR H  ++KIY  L  ++ +++ +GY+  TS ALHD D+E+K  
Sbjct: 790 CSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADTSSALHDTDEEQKEQ 849

Query: 762 LLFEHSEKLALAYGILTTAPGT 783
            L+ HSEKLALAYG++    G+
Sbjct: 850 NLWNHSEKLALAYGLIVVPEGS 871



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 217/494 (43%), Gaps = 79/494 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSSRCGSSVHA 159
           W   +   VR      AF +   M  RG     +    ++ AC   G      CG+++HA
Sbjct: 9   WYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHA 68

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +   +G   NV++  AL+ +Y     +S A++LF EM +    ++VSW  ++ A + +G 
Sbjct: 69  LTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPER---NVVSWTALMVALSSNGY 125

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------------- 262
            E  L  + +M  D  V  +  +    +S C SL     G Q                  
Sbjct: 126 LEEALRAYRQMRRD-GVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVAN 184

Query: 263 ---------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                    G + +A+K+F+RM+  D +SWNAM++ YS  G     F +F  MR      
Sbjct: 185 SLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHH---- 240

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                          GL P+  TL SL+S CAS      G   H
Sbjct: 241 -------------------------------GLRPDATTLCSLMSVCASSDHFSHGSGIH 269

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              ++   S+D S    + VINAL++MY+    +  A  +F  ++   RD+ +W  MI S
Sbjct: 270 SLCLRS--SLDSS----VTVINALVNMYSAAGKLSDAEFLFWNMS--RRDLISWNTMISS 321

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y QN  + DAL    Q+F  ++   PN  T S AL AC+   AL  G+ +HA VL+   +
Sbjct: 322 YVQNCNSTDALKTLGQLFHTNE--SPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ 379

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  V N LI MY +   ++ A  VF ++   ++VS+  L+ GY +   G KA   F  
Sbjct: 380 RNL-LVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSW 438

Query: 554 MRKEGLAPDGVTFL 567
           MR  G+ P+ +T +
Sbjct: 439 MRSAGIKPNYITMI 452



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 14/269 (5%)

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG---ALLLGKETH 373
           TW   ++G  + G    A ++ R M+  G+  +   L SL++ C   G    +  G   H
Sbjct: 8   TWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIH 67

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
             T +  L        ++ +  AL+ +Y     V  A+ +F  +  +N  V +WT ++ +
Sbjct: 68  ALTHRAGLM------GNVYIGTALLHLYGSRGIVSDAQRLFWEMPERN--VVSWTALMVA 119

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
            S NG   +AL  + QM +       NAF    +L  C  L     G Q+ + V+ +  +
Sbjct: 120 LSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSL--CGSLENEVPGLQVASQVIVSGLQ 177

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  VAN LI M+   G +  A  +FD +++ + +SW ++++ Y   G+  K    F  
Sbjct: 178 NQVS-VANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 236

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           MR  GL PD  T   L+  C+ S     G
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASSDHFSHG 265


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/594 (36%), Positives = 342/594 (57%), Gaps = 26/594 (4%)

Query: 247 LSACASLGTWSRGKQCGM--MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           L AC S  +   G++  +  +    +V E   +K       ++T YS  G   +A  +F+
Sbjct: 77  LHACISRRSLEHGRKLHLHLLRSQNRVLENPTLK-----TKLITLYSVCGRVNEARRVFQ 131

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
              ++  +  V  W A+  GY++ G  HEAL ++R M  C ++P        L  C+ + 
Sbjct: 132 IDDEKPPEEPV--WVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLD 189

Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
             L+G+  H   +K  +        D +V NAL+ +Y +    D    +F+ +    R+V
Sbjct: 190 NALVGRAIHAQIVKHDVG-----EADQVVNNALLGLYVEIGCFDEVLKVFEEMP--QRNV 242

Query: 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
            +W  +I  ++  G   + L+ F  M  Q + +  +  TL+  L  CA++ AL  G++IH
Sbjct: 243 VSWNTLIAGFAGQGRVFETLSAFRVM--QREGMGFSWITLTTMLPVCAQVTALHSGKEIH 300

Query: 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
             +L+++    +P + N L+DMY++ G+I     VFD +  +++ SW +++ G+ ++G  
Sbjct: 301 GQILKSRKNADVPLL-NSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQI 359

Query: 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
            +A   FD+M + G+ P+G+TF+ LL  CSHSG+  +G + F ++ ++FG+    EHYAC
Sbjct: 360 HEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYAC 419

Query: 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
           +VD+LGR+ + DEA+ + E +PM P+  IW +LLN CR++ NV L E+ A RL E+E   
Sbjct: 420 LVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNN 479

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD----RT 720
            G+Y +LSNIYANAG W+DV R+R +M  TG+KK  GCSW+Q K    TF  G     R 
Sbjct: 480 PGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRC 539

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
             + +KI+  L+  V   K +GYVP T   LHD+++E K   + EHSE+LA  + ++ T 
Sbjct: 540 SAEYKKIWNELSNAV---KNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTG 596

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            G PIRITKNLR+C DCHS +  +S +    I+LRD+NRFHHF+ GSC+CK YW
Sbjct: 597 AGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 155/367 (42%), Gaps = 45/367 (12%)

Query: 15  TPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLI 74
           TP+       +I LF      CI   SL     + L    L  Q  +++N T    + LI
Sbjct: 62  TPIEEEEEEESISLF---LHACISRRSL--EHGRKLHLHLLRSQNRVLENPT--LKTKLI 114

Query: 75  AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
             Y      + A  + Q     P     W A+     R      A  L+  M+     P 
Sbjct: 115 TLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPG 174

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLF 193
            + F   LKAC +L ++  G ++HA I      +++  V NAL+ +Y          ++F
Sbjct: 175 NFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVF 234

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG---VSLVNALSAC 250
           +EM Q    ++VSWNT++A +A  G     L  F  M    + +G G   ++L   L  C
Sbjct: 235 EEMPQR---NVVSWNTLIAGFAGQGRVFETLSAFRVM----QREGMGFSWITLTTMLPVC 287

Query: 251 ASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWN 284
           A +     GK+                          CG +   +KVF+RM  KD+ SWN
Sbjct: 288 AQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWN 347

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ-MQF 343
            M+ G+S  G   +A  LF +M +  ++ N +T+ A+++G +  G   E   +F   MQ 
Sbjct: 348 TMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQD 407

Query: 344 CGLEPNV 350
            G++P++
Sbjct: 408 FGVQPSL 414



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLI-PFVANCLIDMYSRSGDIDTARVVF- 520
           ++S  L AC    +L  GR++H ++LR+Q  +L  P +   LI +YS  G ++ AR VF 
Sbjct: 72  SISLFLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQ 131

Query: 521 -DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS--HSG 577
            D+ K      W ++  GY  +G   +A   +  M    + P    F + L ACS   + 
Sbjct: 132 IDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNA 191

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
           +V + + +   +  + G + +  + A ++ L       DE +++ E MP +   + W  L
Sbjct: 192 LVGRAI-HAQIVKHDVGEADQVVNNA-LLGLYVEIGCFDEVLKVFEEMP-QRNVVSWNTL 248

Query: 638 LNGCRIHANVELGELAANRLLELE 661
           + G      V    L+A R+++ E
Sbjct: 249 IAGFAGQGRV-FETLSAFRVMQRE 271


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/688 (35%), Positives = 382/688 (55%), Gaps = 27/688 (3%)

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
           S +  + +H  I  + + S  F+ N L+ +YA+C  L+ A  LF  +       IV+W +
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFS-ITHHHFKTIVTWTS 215

Query: 210 IVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           ++   +        L LF +M  +G    Q    +  + LSA A+      G+Q   +  
Sbjct: 216 LITHLSHFNMHLQALSLFNQMRCSGPYPNQ---FTFSSILSASAATMMVLHGQQLHSLIH 272

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
            K  F+     ++    A+V  Y++      A  +F +M + N+    V+W+++I G+  
Sbjct: 273 -KHGFD----ANIFVGTALVDMYAKCADMHSAVRVFDQMPERNL----VSWNSMIVGFFH 323

Query: 328 RGHGHEALDVFRQ-MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
                 A+ VF+  ++   + PN V++ S+LS CA++G L  G++ H   +K  L     
Sbjct: 324 NNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLV---- 379

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
                 V+N+L+DMY KC+  D    +F  +   +RDV TW V++  + QN    +A   
Sbjct: 380 --PLTYVMNSLMDMYFKCRFFDEGVKLFQCVG--DRDVVTWNVLVMGFVQNDKFEEACNY 435

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F  M ++  L  P+  + S  L + A LAAL  G  IH  +++  Y   +  + + LI M
Sbjct: 436 FWVMRREGIL--PDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGS-LITM 492

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y++ G +  A  VF+ ++  NV+SWT++++ Y +HG  ++    F+ M  EG+ P  VTF
Sbjct: 493 YAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTF 552

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           + +L ACSH+G V++GL +F+SM K   ++   EHYAC+VDLLGRA  LDEA   IE MP
Sbjct: 553 VCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMP 612

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
           M+PTP +W ALL  CR + N+++G  AA RL E+E    G+Y LL+N+   +GR ++   
Sbjct: 613 MKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANE 672

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R LM   GV+K PGCSW+  K  T  F   DR+H  S +IY++L  L + +K  GYV +
Sbjct: 673 VRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAE 732

Query: 747 TSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISM 806
           T F  + +++ E+   L+ HSEKLALA+G+LT    +PIRI KNLR CG CH+ +   S 
Sbjct: 733 TEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASK 792

Query: 807 IINHEIILRDSNRFHHFKEGSCTCKGYW 834
           I + EII+RD NRFH F +G C+C  YW
Sbjct: 793 IFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/570 (25%), Positives = 259/570 (45%), Gaps = 86/570 (15%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW 103
           Q +SL     IH QII+ N T +P   ++LI  Y      + AL L         ++  W
Sbjct: 154 QTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTW 213

Query: 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICS 163
            +LI       +   A  LF QM   G +P+++TF  +L A         G  +H++I  
Sbjct: 214 TSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHK 273

Query: 164 SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
            GFD+N+FV  AL+ MYA+C  +  A ++FD+M +    ++VSWN+++  +  +   +  
Sbjct: 274 HGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPER---NLVSWNSMIVGFFHNNLYDRA 330

Query: 224 LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------------- 261
           + +F  +  +  V  + VS+ + LSACA++G  + G+Q                      
Sbjct: 331 VGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMD 390

Query: 262 ----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
               C   +E  K+F+ +  +DVV+WN +V G+ +   FE+A   F  MR+E        
Sbjct: 391 MYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRRE-------- 442

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
                                      G+ P+  +  ++L   AS+ AL  G   H   I
Sbjct: 443 ---------------------------GILPDEASFSTVLHSSASLAALHQGTAIHDQII 475

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           K        +  ++ ++ +LI MYAKC S+  A  +F+ I  ++ +V +WT MI +Y  +
Sbjct: 476 KL------GYVKNMCILGSLITMYAKCGSLVDAYQVFEGI--EDHNVISWTAMISAYQLH 527

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI- 496
           G AN  + LF  M  +   ++P+  T  C L AC+    +  G   H   ++  ++M   
Sbjct: 528 GCANQVIELFEHMLSEG--IEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKKIHDMNPG 584

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTG---YGMHGLGDKAHWAFD 552
           P    C++D+  R+G +D A+   +++  +   S W +L+     YG   +G +A     
Sbjct: 585 PEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLF 644

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +M  E   P    +++L   C+ SG +++ 
Sbjct: 645 EM--EPYNPG--NYVLLANMCTRSGRLEEA 670


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/595 (37%), Positives = 352/595 (59%), Gaps = 21/595 (3%)

Query: 241 VSLVNA-LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
           VS V+  L  CA      +GK C     A+ +   +K  D+++ N ++  YS+ GS + A
Sbjct: 64  VSFVHEILKLCAKRKLLLQGKAC----HAQILLMGLKT-DLLTSNILINMYSKCGSVDFA 118

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +F +M   ++    V+W+ +I    Q G  +EALD+  QMQ  G   +  T+ S+L  
Sbjct: 119 RQVFDEMPSRSL----VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCA 174

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA+  AL   +  H + IK  + ++      + V  AL+D+YAKC  +  A  +F+++  
Sbjct: 175 CAAKCALSECQLLHAFAIKAAMDLN------VFVATALLDVYAKCGLMKDAVCVFESMP- 227

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
            +R V TW+ M   Y QN     ALALF + ++    +K + F +S  + ACA LAA+  
Sbjct: 228 -DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG--LKHDQFLMSSVICACAGLAAMIE 284

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+Q++A + ++ +   I FVA+ LIDMY++ G I+ +  VF ++++RNVV W ++++G  
Sbjct: 285 GKQVNALLSKSGFCSNI-FVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLS 343

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
            H    +    F++M++ GL+P+ VTF+ +L AC H G+V +G KYFD M+KE  ++   
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNV 403

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
            HY+C+VD L RA ++ EA +LI  +P   +  +W +LL  CR H N+EL E+AA +L +
Sbjct: 404 FHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFD 463

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           +E    G+Y LLSN+YA  G+W +VA++R L+K + VKK  G SW++ K+    F VG+R
Sbjct: 464 IEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGER 523

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
            HP+  +IY  L  ++  ++ +GY  +T   LH V +  K +LL  HSEKLA   G+L  
Sbjct: 524 NHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFL 583

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            P  PIRI KNLRICGDCHS +   S     ++I+RD+NRFHHFK G C+C  +W
Sbjct: 584 PPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 192/434 (44%), Gaps = 86/434 (19%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +LK C +      G + HA I   G  +++   N L+ MY++C ++ +ARQ+FDEM  P 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM--PS 127

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV-----SLVNALSACASLGT 255
              +VSWNT++ +  Q+G+    L L  +M      Q +G      ++ + L ACA+   
Sbjct: 128 R-SLVSWNTMIGSLTQNGEENEALDLLLQM------QREGTPFSEFTISSVLCACAAKCA 180

Query: 256 WSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
            S  +                          +CG+M++A  VFE M  + VV+W++M  G
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAG 240

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y +   +E A ALF+K            W                          GL+ +
Sbjct: 241 YVQNEMYEQALALFRK-----------AWET------------------------GLKHD 265

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
              + S++  CA + A++ GK+     +  +LS  G    ++ V ++LIDMYAKC  ++ 
Sbjct: 266 QFLMSSVICACAGLAAMIEGKQ-----VNALLSKSG-FCSNIFVASSLIDMYAKCGGIEE 319

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +  +F  +  + R+V  W  MI   S++  + + + LF +M Q    + PN  T    L 
Sbjct: 320 SYKVFRDV--EKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG--LSPNDVTFVSVLS 375

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC  +  ++ G++    + +  +     F  +C++D  SR+G I  A  +   L      
Sbjct: 376 ACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASA 435

Query: 530 S-WTSLMTGYGMHG 542
           S W SL+     HG
Sbjct: 436 SMWGSLLASCRTHG 449



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 50/346 (14%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNL-THVPPSH-LIAAYVSHNAPSPALSLLQRISPSP 97
           +L+ C   K L Q    H QI++  L T +  S+ LI  Y    +   A  +   + PS 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM-PSR 128

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS- 156
            S+  WN +I    +    + A  L LQM R G    E+T   VL AC    +++C  S 
Sbjct: 129 -SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCAC----AAKCALSE 183

Query: 157 ---VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
              +HA    +  D NVFV  AL+ +YA+C  +  A  +F+ M       +V+W+++ A 
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRS---VVTWSSMAAG 240

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------ 261
           Y Q+   E  L LF R   +  ++ D   + + + ACA L     GKQ            
Sbjct: 241 YVQNEMYEQALALF-RKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCS 299

Query: 262 --------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                         CG +EE+ KVF  ++ ++VV WNAM++G SR     +   LF+KM+
Sbjct: 300 NIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ 359

Query: 308 QENVKLNVVTWSAVIAGYAQRG---HGHEALDVFRQMQFCGLEPNV 350
           Q  +  N VT+ +V++     G    G +  D+  +     L PNV
Sbjct: 360 QMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHH--LAPNV 403



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 125/256 (48%), Gaps = 23/256 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W+++    V+  + + A  LF +    G   D++    V+ AC  L +   G  V+
Sbjct: 230 SVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVN 289

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A++  SGF SN+FV ++L+ MYA+C  +  + ++F ++ +    ++V WN +++  ++  
Sbjct: 290 ALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKR---NVVLWNAMISGLSRHA 346

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            +   ++LF +M   + +  + V+ V+ LSAC  +G   +G         +K F+ M  +
Sbjct: 347 RSLEVMILFEKMQ-QMGLSPNDVTFVSVLSACGHMGLVKKG---------QKYFDLMTKE 396

Query: 279 -----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                +V  ++ MV   SR G   +A+ L  K+       +   W +++A  + R HG+ 
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL---PFNASASMWGSLLA--SCRTHGNL 451

Query: 334 ALDVFRQMQFCGLEPN 349
            L      +   +EP+
Sbjct: 452 ELAEVAAKKLFDIEPH 467


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/603 (38%), Positives = 356/603 (59%), Gaps = 32/603 (5%)

Query: 238 GDGVSLVNAL-SACASLGTWSRGKQCGMMEEAKKVFERMKVK----DVVSWNAMVTGYSR 292
           G G S  +AL SAC  L +         +   K+VF  M       D+   N ++  + +
Sbjct: 115 GVGASTYDALVSACVGLRS---------IRGVKRVFNYMINSGFEPDLYVMNRVLFMHVK 165

Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
            G   DA  LF +M +++V     +W  ++ G    G+  EA  +F  M     +    T
Sbjct: 166 CGLMLDARKLFDEMPEKDV----ASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRT 221

Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
             +++   A +G + +GK+ H   +KR +       DD  V  ALIDMY+KC S++ A  
Sbjct: 222 FATMIRASAGLGLVQVGKQIHSCALKRGVG------DDHFVSCALIDMYSKCGSIEDAHC 275

Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
           +FD +  K      W  +I SY+ +G + +AL+L+ +M  +D     + FT+S  +  CA
Sbjct: 276 VFDQMPEKT--TVGWNSIIASYALHGYSEEALSLYFEM--RDSGTTVDHFTISIVIRICA 331

Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVAN-CLIDMYSRSGDIDTARVVFDNLKQRNVVSW 531
           RLA+L   +Q HA ++R+ +   I  VAN  L+D YS+ G ++ AR VF+ ++ +NV+SW
Sbjct: 332 RLASLEHAKQAHAALVRHGFATDI--VANTALVDFYSKWGRMEDARHVFNRMRHKNVISW 389

Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591
            +L+ GYG HG G +A   F+QM +EG+ P  VTFL +L ACS+SG+  +G + F SM +
Sbjct: 390 NALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKR 449

Query: 592 EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651
           +  +  RA HYAC+++LLGR + LDEA  LI   P +PT  +W ALL  CR+H N+ELG+
Sbjct: 450 DHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGK 509

Query: 652 LAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711
           LAA +L  +E EK  +Y +L N+Y ++G+ K+ A I   +K  G++  P CSWV+ K+  
Sbjct: 510 LAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQP 569

Query: 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 771
             F  GD++H Q+++IY+ +  L+  I   GY  +    L DVD+EE+  L + HSEKLA
Sbjct: 570 YAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDVDEEEQRILKY-HSEKLA 628

Query: 772 LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCK 831
           +A+G++ T   TP++IT+  R+CGDCHSAI  I+M+   EI++RD++RFHHF+ GSC+C 
Sbjct: 629 IAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDASRFHHFRNGSCSCG 688

Query: 832 GYW 834
            YW
Sbjct: 689 DYW 691



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 238/532 (44%), Gaps = 40/532 (7%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLF--LQ 125
           + P      Y+  N P    + +++ SPS        + I + V       A  LF  L+
Sbjct: 54  LKPKPKKVEYMERNVPVLEDTQIRKTSPSGLC-----SQIEKLVVCNRHREAMELFEILE 108

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           +   G+     T+  ++ AC  L S R    V   + +SGF+ +++V N ++ M+ +C  
Sbjct: 109 LEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGL 168

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           +  AR+LFDEM +    D+ SW T+V     +G+      LF  M  +    G   +   
Sbjct: 169 MLDARKLFDEMPEK---DVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFN-DGRSRTFAT 224

Query: 246 ALSACASLGTWSRGKQ---CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
            + A A LG    GKQ   C +        +R    D     A++  YS+ GS EDA  +
Sbjct: 225 MIRASAGLGLVQVGKQIHSCAL--------KRGVGDDHFVSCALIDMYSKCGSIEDAHCV 276

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F +M ++      V W+++IA YA  G+  EAL ++ +M+  G   +  T+  ++  CA 
Sbjct: 277 FDQMPEK----TTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICAR 332

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
           + +L   K+ H   ++   +       D++   AL+D Y+K   ++ AR +F+ +  KN 
Sbjct: 333 LASLEHAKQAHAALVRHGFAT------DIVANTALVDFYSKWGRMEDARHVFNRMRHKN- 385

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
            V +W  +I  Y  +G   +A+ +F QM Q+   V P   T    L AC+     + G +
Sbjct: 386 -VISWNALIAGYGNHGQGQEAVEMFEQMLQEG--VTPTHVTFLAVLSACSYSGLSQRGWE 442

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           I   + R+           C+I++  R   +D A  +      +   + W +L+T   MH
Sbjct: 443 IFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMH 502

Query: 542 GLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKE 592
              +    A +++   G+ P+ +  ++VLL   + SG + +      ++ K+
Sbjct: 503 KNLELGKLAAEKLY--GMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKK 552



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 188/437 (43%), Gaps = 65/437 (14%)

Query: 118 NAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177
            AFRLFL M +        TF  +++A   L   + G  +H+     G   + FV  AL+
Sbjct: 202 EAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALI 261

Query: 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237
            MY++C ++  A  +FD+M +      V WN+I+A+YA  G +E  L L+  M  D    
Sbjct: 262 DMYSKCGSIEDAHCVFDQMPEK---TTVGWNSIIASYALHGYSEEALSLYFEMR-DSGTT 317

Query: 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKDVVSWNAMVTGYSRIGSF 296
            D  ++   +  CA L +    KQ      A     R     D+V+  A+V  YS+ G  
Sbjct: 318 VDHFTISIVIRICARLASLEHAKQ------AHAALVRHGFATDIVANTALVDFYSKWGRM 371

Query: 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356
           EDA  +F +MR +NV    ++W+A+IAGY   G G EA+++F QM   G+ P  VT +++
Sbjct: 372 EDARHVFNRMRHKNV----ISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAV 427

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           LS C+  G    G E   Y++KR       H                             
Sbjct: 428 LSACSYSGLSQRGWEIF-YSMKR------DHK---------------------------- 452

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476
           + P+    A    ++G  S     ++A AL      +    KP A   +  L AC     
Sbjct: 453 VKPRAMHYACMIELLGRESL---LDEAYALI-----RTAPFKPTANMWAALLTACRMHKN 504

Query: 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV-----VSW 531
           L  G+     +   + E L  ++   L+++Y+ SG +  A  +   LK++ +      SW
Sbjct: 505 LELGKLAAEKLYGMEPEKLCNYIV--LLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSW 562

Query: 532 TSLMTGYGMHGLGDKAH 548
             +         GDK+H
Sbjct: 563 VEVKKQPYAFLCGDKSH 579


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/498 (42%), Positives = 308/498 (61%), Gaps = 12/498 (2%)

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           +R+M F G   +  T  S++  CA + AL LGKE H + +     V G +  D+ V  AL
Sbjct: 113 YRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM-----VCG-YGSDMYVQAAL 166

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I +YAK   + VA+ +FDA+    R +  W  +I  Y QNG   +++ LF  M +     
Sbjct: 167 IALYAKASDMKVAKKVFDAMP--QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG--F 222

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           +P++ T+   L +C++L AL FG  +H Y   N +++ +  +   LI+MY+R G++  AR
Sbjct: 223 QPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV-VLGTSLINMYTRCGNVSKAR 281

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VFD++K+RNVV+WT++++GYGMHG G +A   F +MR  G  P+ +TF+ +L AC+HSG
Sbjct: 282 EVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSG 341

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG-MPMEPTPIIWVA 636
           ++D G + F SM + +G+    EH  C+VD+ GRA  L++A + I+  +P EP P +W +
Sbjct: 342 LIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTS 401

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           +L  CR+H N +LG   A  +L +E E  G Y +LSNIYA AGR   V  +R++M    +
Sbjct: 402 MLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRL 461

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK+ G S ++    T  F +GD++HPQ+  IY  L  L+ R    GYVP     +HD+++
Sbjct: 462 KKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEE 521

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EE+   L  HSEKLALA+G+L T  G  IRI KNLRIC DCHSAI  IS+I + EII+RD
Sbjct: 522 EERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 581

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHFK+GSC+C  YW
Sbjct: 582 KFRFHHFKDGSCSCLDYW 599



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 201/395 (50%), Gaps = 26/395 (6%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS---PFS 99
           LLR    L  +  +H  IIV  L H   S L+   +S    + +++  +R+ P+   P S
Sbjct: 33  LLRSGPRLRNLQQVHAHIIVSGL-HRSRS-LLTKLISLVCTAGSITYARRLFPTVPNPDS 90

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
            F +++L++   +     +    + +M+  G     YTF  V+KAC +L + R G  +H+
Sbjct: 91  -FLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHS 149

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   G+ S+++V  AL+A+YA+   +  A+++FD M Q     I++WN++++ Y Q+G 
Sbjct: 150 HVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQR---TIIAWNSLISGYDQNGL 206

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK-KVFERMKVK 278
            +  + LF  M  +   Q D  ++V+ LS+C+ LG    G  C + + A    F+     
Sbjct: 207 PQESIGLFHLMM-ESGFQPDSATIVSLLSSCSQLGALDFG--CWLHDYADGNGFDL---- 259

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +VV   +++  Y+R G+   A  +F  M++ NV    VTW+A+I+GY   G+G +A+++F
Sbjct: 260 NVVLGTSLINMYTRCGNVSKAREVFDSMKERNV----VTWTAMISGYGMHGYGRQAMELF 315

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+  G  PN +T V++LS CA  G +  G+       +    V G   +  MV     
Sbjct: 316 TEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMV----- 370

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           DM+ +   ++ A        PK    A WT M+G+
Sbjct: 371 DMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 136/294 (46%), Gaps = 26/294 (8%)

Query: 22  LFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYL---IHQQIIVQNLTHVPPSHLIAAYV 78
           LF    LFS         TS++ + C  L+ + L   IH  ++V    +    ++ AA +
Sbjct: 111 LFYRRMLFSGAPQSNYTFTSVI-KACADLSALRLGKEIHSHVMV--CGYGSDMYVQAALI 167

Query: 79  SHNAPSPALSLLQRI--SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY 136
           +  A +  + + +++  +    ++  WN+LI    +  LP  +  LF  MM  G+ PD  
Sbjct: 168 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSA 227

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           T   +L +C +L +   G  +H     +GFD NV +  +L+ MY RC  +S AR++FD M
Sbjct: 228 TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSM 287

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            +    ++V+W  +++ Y   G     + LF  M      + + ++ V  LSACA     
Sbjct: 288 KER---NVVTWTAMISGYGMHGYGRQAMELFTEMRA-YGPRPNNITFVAVLSACA----- 338

Query: 257 SRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                 G++++ ++VF  MK     V  V     MV  + R G   DA+   KK
Sbjct: 339 ----HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKK 388


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 374/682 (54%), Gaps = 25/682 (3%)

Query: 103  WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
            WNA+I       +    F +F  M   G  PD  T   ++  C        GS +H++  
Sbjct: 516  WNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCL 575

Query: 163  SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             S  DS+V V NAL+ MY+    LS A  LF  M +    D++SWNT++++Y Q+ ++  
Sbjct: 576  RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRR---DLISWNTMISSYVQNCNSTD 632

Query: 223  GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
             L    ++        + ++  +AL AC+S G    GK    +     V +    ++++ 
Sbjct: 633  ALKTLGQLF-HTNESPNHLTFSSALGACSSPGALIDGKMVHAI-----VLQLSLQRNLLV 686

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             N+++T Y +  S EDA  +F+ M   ++    V+++ +I GYA    G +A+ VF  M+
Sbjct: 687  GNSLITMYGKCNSMEDAEKVFQSMPTHDI----VSYNVLIGGYAVLEDGTKAMQVFSWMR 742

Query: 343  FCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G++PN +T++++    AS   L   G+  H Y I+           D  V N+LI MY
Sbjct: 743  SAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRT------GFLSDEYVANSLITMY 796

Query: 402  AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            AKC +++ +  +F++I   N+++ +W  +I +  Q G   +AL LF  M  Q    K + 
Sbjct: 797  AKCGNLESSTNIFNSIT--NKNIVSWNAIIAANVQLGHGEEALKLFIDM--QHAGNKLDR 852

Query: 462  FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
              L+  L +CA LA+L  G Q+H   +++  +    +V N  +DMY + G +D    V  
Sbjct: 853  VCLAECLSSCASLASLEEGMQLHGLGMKSGLDS-DSYVVNAAMDMYGKCGKMDEMLQVVP 911

Query: 522  NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +   R    W +L++GY  +G   +A   F QM   G  PD VTF+ LL ACSH+G+VD+
Sbjct: 912  DQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDK 971

Query: 582  GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
            G+ Y++SM+  FG+S   +H  CIVDLLGR  R  EA + IE MP+ P  +IW +LL+  
Sbjct: 972  GIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSS 1031

Query: 642  RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
            R H N+E+G   A +LLEL+   D +Y LLSN+YA   RW DV ++RS MK   + KRP 
Sbjct: 1032 RTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPA 1091

Query: 702  CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
            CSW++ K   +TF +GDR H  ++KIY  L  ++ +++ +GY+  TS ALHD D+E+K  
Sbjct: 1092 CSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADTSSALHDTDEEQKEQ 1151

Query: 762  LLFEHSEKLALAYGILTTAPGT 783
             L+ HSEKLALAYG++    G+
Sbjct: 1152 NLWNHSEKLALAYGLIVVPEGS 1173



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 216/494 (43%), Gaps = 79/494 (15%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSSRCGSSVHA 159
           W   +   VR      AF +   M   G     +    ++ AC   G      CG+++HA
Sbjct: 311 WYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHA 370

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           +   +G   NV++  AL+ +Y     +S A++LF EM +    ++VSW  ++ A + +G 
Sbjct: 371 LTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPER---NVVSWTALMVALSSNGY 427

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC----------------- 262
            E  L  + +M  D  V  +  +    +S C SL     G Q                  
Sbjct: 428 LEEALRAYRQMRRD-GVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVAN 486

Query: 263 ---------GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                    G + +A+K+F+RM+  D +SWNAM++ YS  G     F +F  MR      
Sbjct: 487 SLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHH---- 542

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
                                          GL P+  TL SL+S CAS      G   H
Sbjct: 543 -------------------------------GLRPDATTLCSLMSVCASSDHFSHGSGIH 571

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              ++   S+D S    + VINAL++MY+    +  A  +F  ++   RD+ +W  MI S
Sbjct: 572 SLCLRS--SLDSS----VTVINALVNMYSAAGKLSDAEFLFWNMS--RRDLISWNTMISS 623

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y QN  + DAL    Q+F  ++   PN  T S AL AC+   AL  G+ +HA VL+   +
Sbjct: 624 YVQNCNSTDALKTLGQLFHTNE--SPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ 681

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  V N LI MY +   ++ A  VF ++   ++VS+  L+ GY +   G KA   F  
Sbjct: 682 RNL-LVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSW 740

Query: 554 MRKEGLAPDGVTFL 567
           MR  G+ P+ +T +
Sbjct: 741 MRSAGIKPNYITMI 754



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 174/424 (41%), Gaps = 79/424 (18%)

Query: 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL----------------- 313
           +F+ M  +   +W   V+G  R GS   AF + + MR+  V L                 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 314 ---------------------NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
                                NV   +A++  Y  RG   +A  +F +M     E NVV+
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMP----ERNVVS 414

Query: 353 LVSLLSGCASVGALLL-----------GKETHCYTIKRVLSVDGSHPDD----------- 390
             +L+   +S G L             G   +      V+S+ GS  ++           
Sbjct: 415 WTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVI 474

Query: 391 -------LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                  + V N+LI M+     V  A  +FD +  +  D  +W  MI  YS  G  +  
Sbjct: 475 VSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRM--EEHDTISWNAMISMYSHQGICSKC 532

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMA-CARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
             +F  M      ++P+A TL C+LM+ CA       G  IH+  LR+  +  +  V N 
Sbjct: 533 FLVFSDMRHHG--LRPDATTL-CSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVT-VINA 588

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L++MYS +G +  A  +F N+ +R+++SW ++++ Y  +     A     Q+     +P+
Sbjct: 589 LVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPN 648

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TF   L ACS  G +  G K   ++  +  +         ++ + G+ N +++A ++ 
Sbjct: 649 HLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF 707

Query: 623 EGMP 626
           + MP
Sbjct: 708 QSMP 711


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 316/521 (60%), Gaps = 11/521 (2%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N+  W+ +I GY+       A+ ++R M  CG+ PN  T   +L  C  +  L  G+E H
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K  + +D   P    ++N LI +YA C  +D A VMFD +     D A+W+ M+  
Sbjct: 131 SQIVK--VGLDFETP----LVNGLIKLYAACGCMDYACVMFDEMPEP--DSASWSTMVSG 182

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+QNG A +AL LF +M  Q + V  +AFTL+  +  C  L AL  G+ +H+Y+ +   +
Sbjct: 183 YAQNGQAVEALKLFREM--QAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVK 240

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           + +  +   L+ MYS+ G +D A  VF  + +R+V +W++++ GY +HG G+KA   FD 
Sbjct: 241 IDV-VLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA 299

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M++    P+ VTF  +L ACSHSG+V++G + F++M  E+ I+ + +HY C+VDL  RA 
Sbjct: 300 MKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAG 359

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            +  A + I+ MP+EP  ++W  LL  C+ H   +LGE  + ++L+L+     +Y L+SN
Sbjct: 360 MVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSN 419

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA+ GRW  V ++RSLMK    KK+ G S ++       F +GD +HP+ +KIY +L  
Sbjct: 420 VYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQ 479

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           + +++K +G+V  T   LHD+D+EEK   L  HSE+LA+AYG+L T  G+PIRI KNLR+
Sbjct: 480 MARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRV 539

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH  I  IS + N EII+RD  RFHHF+E  C+C  YW
Sbjct: 540 CRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 163/342 (47%), Gaps = 23/342 (6%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F WN +IR       P  A  L+  M   G  P+ YTF FVLKAC +L     G  +H
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           + I   G D    + N L+ +YA C  + YA  +FDEM +P   D  SW+T+V+ YAQ+G
Sbjct: 131 SQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEP---DSASWSTMVSGYAQNG 187

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK--QCGMMEEAKKVFERMK 276
            A   L LF  M  +  V  D  +L + +  C  LG    GK     M +E  K+     
Sbjct: 188 QAVEALKLFREMQAE-NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKI----- 241

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DVV   A+V  YS+ GS ++A  +F+ M + +V      WS +IAGYA  GHG +AL 
Sbjct: 242 --DVVLGTALVGMYSKCGSLDNALKVFQGMAERDV----TAWSTMIAGYAIHGHGEKALQ 295

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F  M+     PN VT  S+LS C+  G +  G +     I   +  +      +     
Sbjct: 296 LFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQ-----IFETMWTEYKITPQIKHYGC 350

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
           ++D++ +   V  A   F    P   +V  W  ++G+   +G
Sbjct: 351 MVDLFCRAGMVGHAH-KFIQTMPIEPNVVLWRTLLGACKTHG 391



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 21/244 (8%)

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID--MYSRSGDIDTARVVF 520
           +L  A+  C R+  L+    I A+++R        F+ + LI+    + SG +  A  +F
Sbjct: 9   SLVAAIKRCTRVGDLK---AIQAHMVRANLTQ-DTFLTSKLIESSAVTLSGHVAYAHRIF 64

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
                 N+  W +++ GY +      A   +  M   G++P+  TF  +L AC     + 
Sbjct: 65  SCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLC 124

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
           +G +    + K  G+         ++ L      +D A  + + MP EP    W  +++G
Sbjct: 125 EGQELHSQIVK-VGLDFETPLVNGLIKLYAACGCMDYACVMFDEMP-EPDSASWSTMVSG 182

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYA-------NAGRWKDVARIRSLMKH 693
              +    +  L   R ++ E+    ++TL S +         + G+W     + S M  
Sbjct: 183 YAQNGQA-VEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKW-----VHSYMDK 236

Query: 694 TGVK 697
            GVK
Sbjct: 237 EGVK 240


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/758 (33%), Positives = 385/758 (50%), Gaps = 82/758 (10%)

Query: 135  EYTFPFVLKACGELPS-SRCGSS-----VHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            EY   F L +   L S  RC +S     +HA +  +G   +      L+  YA+      
Sbjct: 339  EYACFFTLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFES 398

Query: 189  ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
            ++++FD   +P   D   W  ++  Y   G  E  + L+  M    + Q       + L 
Sbjct: 399  SKRVFDTFPKP---DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLK 455

Query: 249  ACASLGTWSRGKQCGMMEEAKKVFERM-------------------------------KV 277
            AC+  G  S G + G   E   +F +M                               +V
Sbjct: 456  ACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRV 515

Query: 278  KDVVSWN-----------------AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
            K+  S +                 A++  Y+  G+  D   +F+ ++++ +    ++W+ 
Sbjct: 516  KEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI----LSWNT 571

Query: 321  VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
            +I+ + + G   EAL +F QMQ  GL P+  +L S LS C ++    LG + H Y IK  
Sbjct: 572  LISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIK-- 629

Query: 381  LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
                G+  D   V NALIDMYAKC  V  A  MF+ I  K + + TW  MI  +SQNG +
Sbjct: 630  ---TGNFND--FVQNALIDMYAKCGFVHSANKMFEKI--KEKSLVTWNSMICGFSQNGYS 682

Query: 441  NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIH----AYVLRNQYEMLI 496
             +A+ LF QM+     VK +  T    + AC+ L  L  G+ +H     Y LR       
Sbjct: 683  VEAITLFDQMYMN--CVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKD----- 735

Query: 497  PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             ++   L DMYS+ G++  A  VFD + +R++VSW+ ++ GYGMHG  +     F+QM  
Sbjct: 736  SYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLG 795

Query: 557  EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
             G+ P+ +TF+ +L ACSH+G V++G  YF+SMS EFG+  + +H+AC+VDLL RA  L+
Sbjct: 796  SGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLN 854

Query: 617  EAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
             A ++I  +P      IW ALLNGCRIH  +++ +     LL++++   G YTLLSNIYA
Sbjct: 855  GAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYA 914

Query: 677  NAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQ 736
              G W    ++RS+MK  G++K PG S ++  +    F  GD +H Q++ IY  L     
Sbjct: 915  EEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRS 974

Query: 737  RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
             + A  Y  +   ++       K + +  HSEKLA+A+GI+ T PGT +RI+KNLR+C D
Sbjct: 975  LVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRD 1034

Query: 797  CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            CHS     S I   EII+RD NRFH F+ GSC+C  YW
Sbjct: 1035 CHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 204/458 (44%), Gaps = 91/458 (19%)

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRC--------GSSVHAVICSSGFDSNV-FV 172
           +F QM+     PD  T   V +AC EL S R         G SVH  +     D  + F+
Sbjct: 478 MFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFL 537

Query: 173 CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232
             ALM +YA    L    ++F+ + +     I+SWNT+++ + ++G  E  L+LF +M  
Sbjct: 538 GPALMELYADTGNLRDCHKVFETIKEK---TILSWNTLISIFTRNGQPEEALLLFVQM-- 592

Query: 233 DVKVQG---DGVSLVNALSACASLGTWSRGKQ-------------------------CGM 264
             + QG   D  SL ++LSAC ++     G Q                         CG 
Sbjct: 593 --QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGF 650

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
           +  A K+FE++K K +V+WN+M+ G+S+ G   +A  LF +M    VK++ +T+      
Sbjct: 651 VHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTF------ 704

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
                                        +S++  C+ +G L  GK  H   I   L  D
Sbjct: 705 -----------------------------LSVIQACSHLGYLEKGKWVHHKLIMYGLRKD 735

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
            S+ D      AL DMY+KC  + +A  +FD ++   R + +W+VMI  Y  +G  N  +
Sbjct: 736 -SYLD-----TALTDMYSKCGELQMAHGVFDRMS--ERSIVSWSVMIAGYGMHGQINATI 787

Query: 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504
           +LF QM      +KPN  T    L AC+   A+  G+     +     E      A C++
Sbjct: 788 SLFNQMLGSG--IKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFA-CMV 844

Query: 505 DMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           D+ SR+GD++ A  +  +L    N   W +L+ G  +H
Sbjct: 845 DLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIH 882



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 34/289 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++  WN LI    R   P+ A  LF+QM  +G  PD Y+    L ACG +  S+ G+ +H
Sbjct: 565 TILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIH 624

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             I  +G + N FV NAL+ MYA+C  +  A ++F+++ +     +V+WN+++  ++Q+G
Sbjct: 625 GYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEK---SLVTWNSMICGFSQNG 680

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK------------------ 260
            +   + LF +M  +  V+ D ++ ++ + AC+ LG   +GK                  
Sbjct: 681 YSVEAITLFDQMYMNC-VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD 739

Query: 261 --------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
                   +CG ++ A  VF+RM  + +VSW+ M+ GY   G      +LF +M    +K
Sbjct: 740 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIK 799

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP---NVVTLVSLLS 358
            N +T+  +++  +  G   E    F  M   G+EP   +   +V LLS
Sbjct: 800 PNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLS 848


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/491 (41%), Positives = 310/491 (63%), Gaps = 16/491 (3%)

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G++PN  T  ++L+    V       E H   IKR      ++     V  AL+D Y K 
Sbjct: 5   GIKPNDFTYSTILTAQPGVSPF----EMHAQAIKR------NYVKSPSVGTALLDAYVKR 54

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
            +VD A  +F  I  K  D+  W+ MI  Y+Q G    A+ +F QM ++   +KPN +T 
Sbjct: 55  GNVDEASKVFQRIEEK--DIVAWSAMICGYAQIGDTEGAVRIFVQMAKEK--IKPNEYTF 110

Query: 465 SCALMACAR-LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           S  + ACA   A +  G+Q+HA+ +++++   +  V++ L+ MYS+ GDI++A  VF   
Sbjct: 111 SGIINACAAPTAGVEQGKQLHAWSIKSRFNNAL-CVSSALLTMYSKRGDIESAFEVFKRQ 169

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           ++R++VSW S+++GY  HG G KA   F++M+++ L  DGVTF+ ++ AC+H+G+ ++G 
Sbjct: 170 RERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQ 229

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           +YFD M K+  I  R EHY+C+VDL GRA  L +A+E+I  MP   +  +W  LL    I
Sbjct: 230 RYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCI 289

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H N+E+G+LAA++L+ L+ +   SY LL+N+YA+ G WK+ A++R LM+   VKK  G S
Sbjct: 290 HRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYS 349

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++ K  T TF  GD +HP S +IY  L  L  ++K  GY P TS+   DVD+E K  +L
Sbjct: 350 WIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAIL 409

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
            +HSE+LA+A+G++ T PGTP++I KNLR+CGDCHS I  IS++   +I++RDSNRFHHF
Sbjct: 410 SQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHF 469

Query: 824 KEGSCTCKGYW 834
           K G C+C  YW
Sbjct: 470 KGGLCSCGDYW 480



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 17/258 (6%)

Query: 54  YLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAV 111
           + +H Q I +N    P   + L+ AYV       A  + QRI      +  W+A+I    
Sbjct: 26  FEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEK--DIVAWSAMICGYA 83

Query: 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSS--RCGSSVHAVICSSGFDSN 169
           ++   + A R+F+QM +    P+EYTF  ++ AC   P++    G  +HA    S F++ 
Sbjct: 84  QIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACA-APTAGVEQGKQLHAWSIKSRFNNA 142

Query: 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229
           + V +AL+ MY++   +  A ++F    +    D+VSWN+I++ YAQ G     L +F  
Sbjct: 143 LCVSSALLTMYSKRGDIESAFEVFKRQRER---DLVSWNSIISGYAQHGYGRKALEVFEE 199

Query: 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVT 288
           M     ++ DGV+ +  +SAC   G  + G++   +M +   +  RM+      ++ MV 
Sbjct: 200 MQRQ-NLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRME-----HYSCMVD 253

Query: 289 GYSRIGSFEDAFALFKKM 306
            Y R G    A  +  +M
Sbjct: 254 LYGRAGMLVKAMEIINEM 271



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 146/314 (46%), Gaps = 57/314 (18%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++EA KVF+R++ KD+V+W+AM+ GY++IG  E A  +F +M +E +K          
Sbjct: 55  GNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK---------- 104

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS-VGALLLGKETHCYTIKRVL 381
                                    PN  T   +++ CA+    +  GK+ H ++IK   
Sbjct: 105 -------------------------PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRF 139

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
           +      + L V +AL+ MY+K   ++ A  +F     + RD+ +W  +I  Y+Q+G   
Sbjct: 140 N------NALCVSSALLTMYSKRGDIESAFEVFK--RQRERDLVSWNSIISGYAQHGYGR 191

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
            AL +F +M +Q+  ++ +  T    + AC        G++    ++++ +  + P + +
Sbjct: 192 KALEVFEEMQRQN--LEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHH--IEPRMEH 247

Query: 502 --CLIDMYSRSGDIDTARVVFDNL---KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
             C++D+Y R+G +  A  + + +      NV  W +L+    +H   +    A D++  
Sbjct: 248 YSCMVDLYGRAGMLVKAMEIINEMPFPASANV--WRTLLAASCIHRNLEVGKLAADKLI- 304

Query: 557 EGLAPDGVTFLVLL 570
             L P      VLL
Sbjct: 305 -SLQPQNPASYVLL 317



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 37/244 (15%)

Query: 126 MMRRGWHPDEYTFPFVLKA-CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
           M R G  P+++T+  +L A  G  P       +HA      +  +  V  AL+  Y +  
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFE-----MHAQAIKRNYVKSPSVGTALLDAYVKRG 55

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            +  A ++F  + +    DIV+W+ ++  YAQ GD EG + +F +M  + K++ +  +  
Sbjct: 56  NVDEASKVFQRIEEK---DIVAWSAMICGYAQIGDTEGAVRIFVQMAKE-KIKPNEYTFS 111

Query: 245 NALSACAS-LGTWSRGKQC--------------------------GMMEEAKKVFERMKV 277
             ++ACA+      +GKQ                           G +E A +VF+R + 
Sbjct: 112 GIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRE 171

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           +D+VSWN++++GY++ G    A  +F++M+++N++++ VT+  VI+     G  +E    
Sbjct: 172 RDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRY 231

Query: 338 FRQM 341
           F  M
Sbjct: 232 FDIM 235


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 388/706 (54%), Gaps = 37/706 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+A     S R G  +HA +   GF S+  + N L+ MYA+C  L  A ++FD M +  
Sbjct: 10  LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPER- 68

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  ++  +   G+A   L LF  M      +G G S  N  +  A+L     G 
Sbjct: 69  --NVVSWTALMVGFLHHGEARECLRLFGEM------RGSGTS-PNEFTLSATLKACGGGT 119

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G+      V    +  DVV+ N++V  YS+     DA  +F  +   N+     TW++
Sbjct: 120 RAGVQIHGVCVRTGFEGHDVVA-NSLVVMYSKGRWTGDARRVFDVIPSRNL----ATWNS 174

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLE-PNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +I+GYA  G G ++L VFR+MQ    E P+  T  SLL  C+ +GA   G + H      
Sbjct: 175 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHA----- 229

Query: 380 VLSVDGSHP-DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            ++V G  P  + ++  AL+D+Y KC  + VA  +FD +  + R+   WT +I  ++Q G
Sbjct: 230 AMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGL--ERRNAIQWTTVIVGHAQEG 287

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +A+ LF + +     V+ +   LS  +   A  A +  G+Q+H Y  +    + +  
Sbjct: 288 QVKEAMCLFRRFWSSG--VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVS- 344

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           VAN L+DMY + G    A   F  +  RNVVSWT+++ G G HG G +A   F++M++EG
Sbjct: 345 VANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEG 404

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           +  D V +L LL ACSHSG+VD+  +YF  + ++  +  +AEHYAC+VDLLGRA  L EA
Sbjct: 405 VEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREA 464

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            ELI  MPMEPT  +W  LL+ CR+H +V +G    + LL ++ +   +Y +LSNI A A
Sbjct: 465 KELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEA 524

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF-VGDRTHPQSQKIYEILAGLVQR 737
           G W++   IR  M+  G++K+ GCSW +  +    F+  GD  HPQ+  I   L  +  R
Sbjct: 525 GEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEAR 584

Query: 738 IKA-MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP--------IRIT 788
           ++  +GY      ALHDVD+E + + L EHSE+LA+   +L    G          +R+ 
Sbjct: 585 MRERLGYSGDARCALHDVDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEVVRVY 644

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CGDCH  +  +S ++   +++RD+NRFH F+ G+C+C+ YW
Sbjct: 645 KNLRVCGDCHEFLKGLSAVVRRVVVVRDANRFHRFQNGACSCRDYW 690



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 209/450 (46%), Gaps = 35/450 (7%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   +         RLF +M   G  P+E+T    LKACG    +R G  +H
Sbjct: 69  NVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIH 126

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V   +GF+ +  V N+L+ MY++      AR++FD +      ++ +WN++++ YA +G
Sbjct: 127 GVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSR---NLATWNSMISGYAHAG 183

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L++F  M      Q D  +  + L AC+ LG    G Q         V   M V+
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQ---------VHAAMAVR 234

Query: 279 DVV-SWNAMVTG-----YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
            V  + NA++ G     Y +      A  +F  + +     N + W+ VI G+AQ G   
Sbjct: 235 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERR----NAIQWTTVIVGHAQEGQVK 290

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EA+ +FR+    G+  +   L S+++  A    +  GK+ HCYT K    +D S      
Sbjct: 291 EAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVS------ 344

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V N+L+DMY KC     A   F  +  +N  V +WT MI    ++G   +A+ LF +M  
Sbjct: 345 VANSLVDMYLKCGLTGEAGRRFREMPARN--VVSWTAMINGVGKHGHGREAIDLFEEM-- 400

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           Q++ V+ +       L AC+    +   R+  + + +++          C++D+  R+G+
Sbjct: 401 QEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGE 460

Query: 513 IDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           +  A+ +  ++     V  W +L++   +H
Sbjct: 461 LREAKELILSMPMEPTVGVWQTLLSACRVH 490


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 321/575 (55%), Gaps = 57/575 (9%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           NV  ++ +I G  Q     +A+  + +M      PN  T  +L   C +  A   G + H
Sbjct: 94  NVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVH 153

Query: 374 CYTIKRVLSVD-----------GSHPD--------------DLMVINALIDMYAKCKSVD 408
            + IK+ LS D           GS  +              D++  NA+ID Y KC  V+
Sbjct: 154 AHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVE 213

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL------------ 456
            A+ +F ++  KN  V +W VM+   ++ G   +A  LF +M +++++            
Sbjct: 214 AAKELFWSMEDKN--VGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKG 271

Query: 457 -----------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
                            ++P  F LS  L ACA L AL  GR IHAYV  N        +
Sbjct: 272 GYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV-NNNSNSFDAVL 330

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
              L+DMY++ G +D A  VF+ ++++ V +W +++ G GMHG  + A   F +M+K+  
Sbjct: 331 GTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKF 390

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            P+G+T L +L AC+HSGMVD+GL+ F+SM + +GI    EHY C+VDLLGRA  L EA 
Sbjct: 391 RPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAE 450

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           E++  MPMEP+  +W ALL  CR H +VELGE     LLELE +  G Y LLSNIYA AG
Sbjct: 451 EVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAG 510

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           RW DVA +R LMK  GVK   G S +        F +GD +HPQ + IY +L  +++R+K
Sbjct: 511 RWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLK 570

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             G+ P TS  L D+++EEK   L  HSEKLA+A+G++ T PGT I + KNLR+C DCHS
Sbjct: 571 MEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHS 630

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A   IS + + EII+RD  R+HHFK G+C+CK +W
Sbjct: 631 AFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 144/526 (27%), Positives = 244/526 (46%), Gaps = 77/526 (14%)

Query: 33  TTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQ- 91
           T+   + T L L   KS T ++ + Q   V   T     H ++  +     +P  S L  
Sbjct: 23  TSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNF 82

Query: 92  -----RISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146
                   P+P +VF +N +I+  ++   P  A   + +MM     P+++T+P + KAC 
Sbjct: 83  ALKVFEYVPNP-NVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACT 141

Query: 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVS 206
              ++  G  VHA +   G   +V + +A + MY     +  AR++  E    G  D++ 
Sbjct: 142 AAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGE---DGNSDVIC 198

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           +N ++  Y +                                             CG +E
Sbjct: 199 FNAMIDGYLK---------------------------------------------CGEVE 213

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
            AK++F  M+ K+V SWN MV+G ++ G  E+A  LF +M+++N     ++WSA+I GY 
Sbjct: 214 AAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNE----ISWSAMIDGYI 269

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           + G+  EAL+VF  MQ   + P    L S+L+ CA++GAL  G+  H Y        + S
Sbjct: 270 KGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV------NNNS 323

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
           +  D ++  AL+DMYAKC  +D+A  +F+ +  K  +V TW  MI     +G A DA+ L
Sbjct: 324 NSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKK--EVFTWNAMICGLGMHGRAEDAIEL 381

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLI 504
           F +M  Q +  +PN  TL   L ACA    +  G +I  +    +   + P + +  C++
Sbjct: 382 FFKM--QKQKFRPNGITLLGVLSACAHSGMVDEGLRI--FNSMEEVYGIEPGMEHYGCVV 437

Query: 505 DMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTGYGMHG---LGDK 546
           D+  R+G +  A  V++    + +   W +L+     HG   LG++
Sbjct: 438 DLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGER 483



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 140/342 (40%), Gaps = 47/342 (13%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   ++      A  +F  M R    P ++    VL AC  L +   G  +HA + 
Sbjct: 261 WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVN 320

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           ++    +  +  AL+ MYA+C  L  A  +F++M +    ++ +WN ++      G AE 
Sbjct: 321 NNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKK---EVFTWNAMICGLGMHGRAED 377

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----V 277
            + LF +M    K + +G++L+  LSACA           GM++E  ++F  M+      
Sbjct: 378 AIELFFKMQKQ-KFRPNGITLLGVLSACA---------HSGMVDEGLRIFNSMEEVYGIE 427

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +  +  +V    R G   +A  +   M  E    +   W A++   A R HG   L  
Sbjct: 428 PGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEP---SAAVWGALLG--ACRKHGDVELGE 482

Query: 338 FRQMQFCGLEPNVVTLVSLLSG----------CASVGALLLGKETHCYT----------I 377
                   LEP      +LLS            A+V  L+  +     T          +
Sbjct: 483 RVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVV 542

Query: 378 KRVLSVDGSHPD----DLMVINALIDMYAKCKSVDVARVMFD 415
                 DGSHP      LM+ N +  +  +  S + ++V+FD
Sbjct: 543 HEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFD 584


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/555 (40%), Positives = 329/555 (59%), Gaps = 20/555 (3%)

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y+ +G+   A  +F     E    N+  W+A++   A   HG EAL     M   G
Sbjct: 114 LIEAYAALGALPAARQVF----DETPVKNIFVWNALLKALALADHGDEALARLADMGRLG 169

Query: 346 LEPNVVTLVSLLSGCASVGALLLG-----KETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           +  +  +    L  C +V A         +E H + I+R  ++  +H     V   LID 
Sbjct: 170 VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALH-TH-----VATTLIDC 223

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAK   V  A  +F A+    R+V +W+ MIG Y++N    DA+ LF  M   D  + PN
Sbjct: 224 YAKLGIVRYAESVFAAM--PERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPN 281

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
           + T+   L ACA + AL  G+ +HAY+LR  ++ L+  V N L+ MY R G ++  R +F
Sbjct: 282 SITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVS-VLNALMAMYMRCGCLEVGRHIF 340

Query: 521 DNL-KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
             +  +R+VVSW SL++GYGMHG G +A   F++M   G +P  +TF+ +L ACSH+G+V
Sbjct: 341 KWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLV 400

Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
           ++G   F+SM  E+G++ RAEHYAC+VDLLGRA +LDEA+ELI  M +EP+P +W ALL 
Sbjct: 401 NEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLG 459

Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
            CRIH +VE  E+A + L +LE    G+Y LL++IYA A     V  ++ L++   ++K 
Sbjct: 460 ACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKV 519

Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
            GCSW++ K+   +F   D  +P  +++  ++   V ++K  GYVP T   L+D++ EEK
Sbjct: 520 TGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEK 579

Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             +L  HSEKLA+A+G++ T  G  IRITKNLR+C DCHS   FIS     EI++RD NR
Sbjct: 580 ERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNR 639

Query: 820 FHHFKEGSCTCKGYW 834
           FHHF++G C+C  YW
Sbjct: 640 FHHFRDGVCSCGDYW 654



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 176/381 (46%), Gaps = 23/381 (6%)

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           F S+ F+   L+  YA    L  ARQ+FDE     + +I  WN ++ A A +   +  L 
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDET---PVKNIFVWNALLKALALADHGDEALA 160

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
             A M G + V  D  S  + L AC ++          + E       R           
Sbjct: 161 RLADM-GRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATT 219

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-- 343
           ++  Y+++G    A ++F  M +     NVV+WSA+I  YA+     +A+++F+ M    
Sbjct: 220 LIDCYAKLGIVRYAESVFAAMPER----NVVSWSAMIGCYAKNERPADAIELFKDMMASD 275

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM-VINALIDMYA 402
             L PN +T+VS+L+ CA V AL  GK  H Y ++R         D L+ V+NAL+ MY 
Sbjct: 276 ADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGF-------DSLVSVLNALMAMYM 328

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           +C  ++V R +F  I  + RDV +W  +I  Y  +G   +A+ +F +M        P+  
Sbjct: 329 RCGCLEVGRHIFKWIGHR-RDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVG--FSPSII 385

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T    L AC+    +  G+ +   ++           A C++D+  R+G +D A  +  +
Sbjct: 386 TFISVLGACSHAGLVNEGKMLFESMVEYGVTPRAEHYA-CMVDLLGRAGQLDEAMELIRS 444

Query: 523 LK-QRNVVSWTSLMTGYGMHG 542
           +  + +   W +L+    +HG
Sbjct: 445 MHIEPSPQVWGALLGACRIHG 465



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 23/256 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSS 156
           +V  W+A+I    +   P +A  LF  MM       P+  T   VL AC  + +   G  
Sbjct: 244 NVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKL 303

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA I   GFDS V V NALMAMY RC  L   R +F  +      D+VSWN++++ Y  
Sbjct: 304 LHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRR--DVVSWNSLISGYGM 361

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
            G     + +F  M   V      ++ ++ L AC+           G++ E K +FE M 
Sbjct: 362 HGFGPEAVQVFEEMI-HVGFSPSIITFISVLGACS---------HAGLVNEGKMLFESMV 411

Query: 277 VKDVVS----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
              V      +  MV    R G  ++A  L + M   +++ +   W A++   A R HGH
Sbjct: 412 EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSM---HIEPSPQVWGALLG--ACRIHGH 466

Query: 333 EALDVFRQMQFCGLEP 348
                        LEP
Sbjct: 467 VEYAEIACSHLFDLEP 482



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 139/312 (44%), Gaps = 40/312 (12%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
           + LI AY +  A   A    Q    +P  ++F WNAL++        D A      M R 
Sbjct: 112 TRLIEAYAALGALPAAR---QVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRL 168

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSS-----VHAVICSSGFDSNVFVCNALMAMYARCD 184
           G   D Y++   LKAC  + +S   +S     VHA     G+  +  V   L+  YA+  
Sbjct: 169 GVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLG 228

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSL 243
            + YA  +F  M +    ++VSW+ ++  YA++      + LF  M   D  +  + +++
Sbjct: 229 IVRYAESVFAAMPER---NVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITI 285

Query: 244 VNALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERM-K 276
           V+ L+ACA +   S GK                          +CG +E  + +F+ +  
Sbjct: 286 VSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGH 345

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            +DVVSWN++++GY   G   +A  +F++M       +++T+ +V+   +  G  +E   
Sbjct: 346 RRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKM 405

Query: 337 VFRQMQFCGLEP 348
           +F  M   G+ P
Sbjct: 406 LFESMVEYGVTP 417



 Score = 39.3 bits (90), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
           PF++  LI+ Y+  G +  AR VFD    +N+  W +L+    +   GD+A      M +
Sbjct: 108 PFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGR 167

Query: 557 EGLAPDGVTFLVLLYAC 573
            G+  D  ++   L AC
Sbjct: 168 LGVPVDSYSYTHGLKAC 184


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 332/575 (57%), Gaps = 16/575 (2%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G +  A  ++ERM+ K+ +S N ++ GY R G    A  +F +M    +     TW+A
Sbjct: 6   KLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKL----TTWNA 61

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +IAG  Q  +  E L +FR+M   G  P+  TL S+ SG A + ++ +G++ H Y IK  
Sbjct: 62  MIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYG 121

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           L +D      L+V ++L  MY +   +    ++  ++  +N  +  W  +I   +QNG  
Sbjct: 122 LELD------LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRN--LVAWNTLIMGNAQNGCP 173

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
              L L+  M  +    +PN  T    L +C+ LA    G+QIHA  ++     ++  V+
Sbjct: 174 ETVLYLYKMM--KISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVS 231

Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-L 559
           + LI MYS+ G +  A   F   +  + V W+S+++ YG HG GD+A   F+ M ++  +
Sbjct: 232 S-LISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEM 290

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
             + V FL LLYACSHSG+ D+GL+ FD M +++G     +HY C+VDLLGRA  LD+A 
Sbjct: 291 EVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAE 350

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
            +I+ MP++P P+IW  LL+ C IH N E+ +     +LE++      Y LL+N++A+A 
Sbjct: 351 AIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAK 410

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           RW+DV+ +R  M+   VKK  G SW + K     F +GDR+  +S++IY  L  L   +K
Sbjct: 411 RWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMK 470

Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
             GY P T+  LHD+D+EEK   L +HSEKLA+A+ ++    G PIRI KNLR+C DCH 
Sbjct: 471 LKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHV 530

Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           A  +IS+I+N EI LRD +RFHHF  G C+C  YW
Sbjct: 531 AFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 184/411 (44%), Gaps = 41/411 (9%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N    N L+  Y R   L  AR++FDEM       + +WN ++A   Q    E GL LF 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDR---KLTTWNAMIAGLIQFEYNEEGLSLFR 80

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M G +    D  +L +  S  A L + S G+Q  +   A K    +   D+V  +++  
Sbjct: 81  EMHG-LGFSPDEYTLGSVFSGSAGLRSVSIGQQ--IHGYAIKYGLEL---DLVVNSSLAH 134

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y R G  +D   + + M       N+V W+ +I G AQ G     L +++ M+  G  P
Sbjct: 135 MYMRNGKLQDGEIVIRSMPVR----NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRP 190

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
           N +T V++LS C+ +     G++ H   IK            + V+++LI MY+KC  + 
Sbjct: 191 NKITFVTVLSSCSDLAIRGQGQQIHAEAIKI------GASSVVAVVSSLISMYSKCGCLG 244

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            A   F     ++ D   W+ MI +Y  +G  ++A+ LF  M +Q ++ + N       L
Sbjct: 245 DAAKAFS--EREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEM-EVNEVAFLNLL 301

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVA--------NCLIDMYSRSGDIDTARVVF 520
            AC+       G ++        ++M++             C++D+  R+G +D A  + 
Sbjct: 302 YACSHSGLKDKGLEL--------FDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAII 353

Query: 521 DNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
            ++  + + V W +L++   +H   + A   F ++ +  + P+     VLL
Sbjct: 354 KSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILE--IDPNDSACYVLL 402



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 159/356 (44%), Gaps = 26/356 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   ++    +    LF +M   G+ PDEYT   V      L S   G  +H    
Sbjct: 59  WNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAI 118

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G + ++ V ++L  MY R   L     +   M    + ++V+WNT++   AQ+G  E 
Sbjct: 119 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSM---PVRNLVAWNTLIMGNAQNGCPET 175

Query: 223 GLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            L L+  M    K+ G   + ++ V  LS+C+ L    +G+Q  +  EA K+     V  
Sbjct: 176 VLYLYKMM----KISGCRPNKITFVTVLSSCSDLAIRGQGQQ--IHAEAIKIGASSVVAV 229

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V    ++++ YS+ G   DA   F +   E    + V WS++I+ Y   G G EA+ +F 
Sbjct: 230 VS---SLISMYSKCGCLGDAAKAFSEREDE----DEVMWSSMISAYGFHGQGDEAIKLFN 282

Query: 340 QM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            M +   +E N V  ++LL  C+  G    G E     +++     G  P  L     ++
Sbjct: 283 SMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKY----GFKP-GLKHYTCVV 337

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           D+  +   +D A  +  ++ P   D   W  ++ + + +  A  A  +F ++ + D
Sbjct: 338 DLLGRAGCLDQAEAIIKSM-PIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEID 392



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN LI    +   P+    L+  M   G  P++ TF  VL +C +L     G  +HA   
Sbjct: 160 WNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI 219

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G  S V V ++L++MY++C  L  A + F E       D V W+++++AY   G  + 
Sbjct: 220 KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE---DEVMWSSMISAYGFHGQGDE 276

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            + LF  M    +++ + V+ +N L AC+  G   +G +   M   K  F+      +  
Sbjct: 277 AIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFK----PGLKH 332

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +  +V    R G  + A A+ K M    +K + V W  +++      +   A  VF+++ 
Sbjct: 333 YTCVVDLLGRAGCLDQAEAIIKSM---PIKPDPVIWKTLLSACNIHKNAEMAQKVFKEI- 388

Query: 343 FCGLEPN 349
              ++PN
Sbjct: 389 -LEIDPN 394


>gi|302773067|ref|XP_002969951.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
 gi|300162462|gb|EFJ29075.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
          Length = 789

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 276/804 (34%), Positives = 425/804 (52%), Gaps = 47/804 (5%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL-THVPPS-HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L+ +  SL Q   IH+++I      H+  S HL+  Y    +   A  LL R+ P   +V
Sbjct: 21  LVDESTSLDQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRM-PRRNAV 79

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            W NA+IR   +      +   F +M++ G  PD   F  ++KA G +     G  V   
Sbjct: 80  SW-NAVIRANAQAGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKAPGTIQE---GEIVQDF 135

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
              SGFD +  V  AL+ MY RC  L  A+  FD + + G+   VSWN ++  Y++  + 
Sbjct: 136 AKKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGV---VSWNALITVYSRGDEK 192

Query: 221 EGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           E  L +F  M     +QG   + V+++   SA A  G  ++   CG +  A  +   +  
Sbjct: 193 EQSLRVFREML----LQGIAPNAVTIICIASAVA--GIAAKITTCGNLIHACSIDSGLIS 246

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
              V+ N+++  + R G+   A  +F+K+ Q +V     +W+ +IA +A+ GH  EALD+
Sbjct: 247 VTTVA-NSIINLFGRGGNISRANEIFEKVDQRDV----CSWNTMIAAFAKNGHVFEALDL 301

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           + +M    + P+ VT V++L  C     L  G+  H     R     G +  DL+V  AL
Sbjct: 302 YGRMT---IRPDGVTFVNVLEACDCPDDLERGESIH-----RDARAHG-YDSDLIVATAL 352

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           + MY +C  +D A  +F AI  ++  V T   +I +++Q G A+ +L  F QM Q    +
Sbjct: 353 VSMYRRCGRLDRAAEVFAAI--QHPGVITLNAIIAAHAQFGRADGSLLHFRQMLQLG--I 408

Query: 458 KPNAFTLSCALMACARLAALRFG-RQIHAYVLR-----NQYEMLIPFVANCLIDMYSRSG 511
           +P+ FTL   L ACA   A     R +H ++       + +++L   V N L++MY++ G
Sbjct: 409 RPSKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPHDIL---VRNALVNMYAKCG 465

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           D+D AR +FD   Q NV +W ++M GY  HG  D A     +M+  G++PD ++F   L 
Sbjct: 466 DLDAARGIFDAAPQGNVSTWNAIMAGYAQHGYADMAVRLLYEMQLAGISPDPISFTAALS 525

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           A SH+  V+ G + F ++S+++G+    EHY  +VDLLGRA  L+EA   +  M +    
Sbjct: 526 ASSHARQVEDGARIFYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFLRSMAIAADA 585

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
             W+ALL  CRIH + +    AA  ++ ++     SYT+LSN+Y+ AGRW +   IR  M
Sbjct: 586 AAWMALLGACRIHKDQDRAMRAAEAIVAIDPSHGASYTVLSNVYSAAGRWDEAEEIRRRM 645

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA-MGYVPQTSFA 750
              G +K PG SW++ K     F V DR+HP++ +IYE L  L   +K+   YVP     
Sbjct: 646 GENGARKEPGRSWIEVKNRVHEFAVKDRSHPRTGEIYERLDELRVVLKSEEDYVPDVGSV 705

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHDV+DE + +LL+ HSEKLAL +G++ T  G+ I I KNLRIC DCH  +   S     
Sbjct: 706 LHDVEDEHRENLLWHHSEKLALGFGLIGTKEGSKITIIKNLRICEDCHVVMKLTSKNTKR 765

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EI++RD  RFHHF  G+C+C   W
Sbjct: 766 EIVVRDCYRFHHFNGGACSCSDCW 789


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 269/807 (33%), Positives = 429/807 (53%), Gaps = 53/807 (6%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQ--NLTHVPPSHLIAAY--VSHNAPSPALSLLQRISPSPF 98
           LLR C +L  V  +H  +     N +    + L+A+Y  +   AP  A  LL  + P   
Sbjct: 8   LLRSCAALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLDEM-PRRN 66

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP--DEYTFPFVLKACGELPSSRCGSS 156
           +V + N +I    R  LP  +   F +   R W    D +T+   L AC      R G +
Sbjct: 67  AVSY-NLVIVAYSRAGLPALSLATFARA--RAWARVVDRFTYAAALAACSRALDVRTGKA 123

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VHA++   G  + +F+ N++ +MYARC  +  AR++FD   +    D VSWN +++ Y +
Sbjct: 124 VHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEER---DDVSWNALLSGYVR 180

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +G  E  L +F+ M     +  +  +L + +  CAS  +++     G    A+ V   + 
Sbjct: 181 AGAREETLEVFSLMCRH-GLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCV- 238

Query: 277 VK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           VK     D+   +AM+  Y++ G+  +A ALFK +   NV    +  +A+IAG+ +    
Sbjct: 239 VKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNV----IVLNAMIAGFCREEAA 294

Query: 332 ---HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
               EAL ++ ++Q  G++P+  +  S+L  C   G    GK+ H   +K       S  
Sbjct: 295 DVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKH------SFQ 348

Query: 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448
            D+ + +ALID+Y+    ++     F ++ PK +DV  WT +I    QN    +AL LF 
Sbjct: 349 GDVYIGSALIDLYSGSGCMEDGYRCFRSL-PK-QDVVIWTSVISGCVQNELFEEALRLFQ 406

Query: 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508
           +  +    ++P+ F +S  + ACA LA  R G QI    +++ +      + N  I M +
Sbjct: 407 ESVRCG--LRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTA-MGNSFIHMCA 463

Query: 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFL 567
           RSGD+D A   F  ++ R+VVSW+++++ +  HG    A   F++M    +AP + +TFL
Sbjct: 464 RSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFL 523

Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPM 627
            +L ACSH G+VD+GL+Y+  M+ E+G+S   +H  C+VDLLGRA RL +A   I     
Sbjct: 524 SILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAF 583

Query: 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687
               ++W +LL  CRIH ++E G+L A+++++LE     SY +L N+Y +AG     ++ 
Sbjct: 584 HDDAVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKT 643

Query: 688 RSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQT 747
           R LMK  GVKK PG SW++   G  +F  GD++HP+S+ IY  +A +V ++  +    Q 
Sbjct: 644 RDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPESKAIYRKVAEMVSKVAGISSREQ- 702

Query: 748 SFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMI 807
                        DL   HSEKLA+A+G++      PIR+ KNLR+C DCHS +  IS  
Sbjct: 703 -------------DLAGCHSEKLAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMELISKS 749

Query: 808 INHEIILRDSNRFHHFKEGSCTCKGYW 834
              EIILRD+ RFH F++GSC+C GYW
Sbjct: 750 ERREIILRDAIRFHRFRDGSCSCGGYW 776


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/700 (35%), Positives = 385/700 (55%), Gaps = 28/700 (4%)

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +TF  +L+ C +  S     ++ A +  SGF   +   + L+    +C  + YARQLFD 
Sbjct: 48  HTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVEL-SGSKLVDASLKCGEIGYARQLFDG 106

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           M +     IV+WN+I+A Y +   ++  + ++  M  +  V  D  +L +   A + L  
Sbjct: 107 MPER---HIVTWNSIIAYYIKHRRSKEAVEMYRLMISN-NVLPDEYTLSSVFKAFSDLSL 162

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
               ++         V   ++V +V   +A+V  Y + G   +A  +  ++ +++V    
Sbjct: 163 EKEAQR----SHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDV---- 214

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V  +A+I GY+Q+G   EA+  F+ M    ++PN  T  S+L  C ++  +  GK  H  
Sbjct: 215 VLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGL 274

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            +K            L    +L+ MY +C  VD + ++F  I   N+   TWT +I    
Sbjct: 275 MVK------SGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQ--VTWTSLISGLV 326

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG    AL  F +M +    VKPN+FTLS AL  C+ LA    GRQ+H  V +  ++  
Sbjct: 327 QNGREETALIEFRKMMRDS--VKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDR- 383

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
             +  + LI++Y + G  D AR+VFD L + +V+S  +++  Y  +G G +A   F++M 
Sbjct: 384 DKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMI 443

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
             GL P+ VT L +L AC++SG+V++G + FDS  K+  I    +HYAC+VD+LGRA RL
Sbjct: 444 NLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKD-KIMLTNDHYACMVDMLGRAGRL 502

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           +EA  LI  +   P  ++W  LL+ C++H  VE+ E    ++LE+    +G+  LLSN+Y
Sbjct: 503 EEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLY 561

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR-THPQSQKIYEILAGL 734
           A+ G+WK V  ++S MK   +KK P  SWV+  + T TF  GD  +HP S++I E L  L
Sbjct: 562 ASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQILENLEEL 621

Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
           +++ K +GYV   S    D+++  K   L +HSEKLA+A+ +     G+ IRI KNLR+C
Sbjct: 622 IKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGS-IRILKNLRVC 680

Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            DCHS I  +S II  EII RDS RFHHF++GSC+C  YW
Sbjct: 681 VDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCGDYW 720



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 241/518 (46%), Gaps = 36/518 (6%)

Query: 30  SVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNL-THVPPSHLIAAYVSHNAPSP 85
           S+TTT      S LLRQC   +S++ +  I  Q++       +  S L+ A +       
Sbjct: 43  SLTTTHTF---SQLLRQCIDERSISGIKNIQAQMLKSGFPVELSGSKLVDASLKCGEIGY 99

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A  L   +      +  WN++I   ++ R    A  ++  M+     PDEYT   V KA 
Sbjct: 100 ARQLFDGMPER--HIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAF 157

Query: 146 GELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
            +L   +     H +    G + SNVFV +AL+ MY +      A+ + D + +    D+
Sbjct: 158 SDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEK---DV 214

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-G 263
           V    ++  Y+Q G+    +  F  M  + KVQ +  +  + L +C +L     GK   G
Sbjct: 215 VLITALIVGYSQKGEDTEAVKAFQSMLVE-KVQPNEYTYASVLISCGNLKDIGNGKLIHG 273

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           +M   K  FE      + S  +++T Y R    +D+  +FK ++      N VTW+++I+
Sbjct: 274 LM--VKSGFESA----LASQTSLLTMYLRCSLVDDSLLVFKCIKYP----NQVTWTSLIS 323

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G  Q G    AL  FR+M    ++PN  TL S L GC+++     G++ H    K     
Sbjct: 324 GLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKY---- 379

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 D    + LI++Y KC   D+AR++FD ++    DV +   MI SY+QNG   +A
Sbjct: 380 --GFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEV--DVISLNTMIYSYAQNGFGREA 435

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L LF +M      ++PN  T+   L+AC     +  G ++     +++  ML      C+
Sbjct: 436 LELFERMINLG--LQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKDKI-MLTNDHYACM 492

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           +DM  R+G ++ A ++   +   ++V W +L++   +H
Sbjct: 493 VDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSACKVH 530


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/498 (42%), Positives = 308/498 (61%), Gaps = 12/498 (2%)

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           +R+M F G   +  T  S++  CA + AL LGKE H + +     V G +  D+ V  AL
Sbjct: 177 YRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM-----VCG-YGSDMYVQAAL 230

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           I +YAK   + VA+ +FDA+    R +  W  +I  Y QNG   +++ LF  M +     
Sbjct: 231 IALYAKASDMKVAKKVFDAMP--QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG--F 286

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           +P++ T+   L +C++L AL FG  +H Y   N +++ +  +   LI+MY+R G++  AR
Sbjct: 287 QPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV-VLGTSLINMYTRCGNVSKAR 345

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            VFD++K+RNVV+WT++++GYGMHG G +A   F +MR  G  P+ +TF+ +L AC+HSG
Sbjct: 346 EVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSG 405

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG-MPMEPTPIIWVA 636
           ++D G + F SM + +G+    EH  C+VD+ GRA  L++A + I+  +P EP P +W +
Sbjct: 406 LIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTS 465

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           +L  CR+H N +LG   A  +L +E E  G Y +LSNIYA AGR   V  +R++M    +
Sbjct: 466 MLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRL 525

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK+ G S ++    T  F +GD++HPQ+  IY  L  L+ R    GYVP     +HD+++
Sbjct: 526 KKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEE 585

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
           EE+   L  HSEKLALA+G+L T  G  IRI KNLRIC DCHSAI  IS+I + EII+RD
Sbjct: 586 EERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 645

Query: 817 SNRFHHFKEGSCTCKGYW 834
             RFHHFK+GSC+C  YW
Sbjct: 646 KFRFHHFKDGSCSCLDYW 663



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 212/444 (47%), Gaps = 38/444 (8%)

Query: 6   GVFPLLKSKTPLTLNHLFTNIKLFS------------VTTTPCIKITSLLLRQCKSLTQV 53
           G      S  PL  N     IKL +              T     +   LLR    L  +
Sbjct: 48  GTVKTTTSSAPLDRNPTMNKIKLQTQQLAFQHPVTRNFDTQSHSPVHEALLRSGPRLRNL 107

Query: 54  YLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPS---PFSVFWWNALIRRA 110
             +H  IIV  L H   S L+   +S    + +++  +R+ P+   P S F +++L++  
Sbjct: 108 QQVHAHIIVSGL-HRSRS-LLTKLISLVCTAGSITYARRLFPTVPNPDS-FLFDSLLKVT 164

Query: 111 VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170
            +     +    + +M+  G     YTF  V+KAC +L + R G  +H+ +   G+ S++
Sbjct: 165 SKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDM 224

Query: 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
           +V  AL+A+YA+   +  A+++FD M Q     I++WN++++ Y Q+G  +  + LF  M
Sbjct: 225 YVQAALIALYAKASDMKVAKKVFDAMPQR---TIIAWNSLISGYDQNGLPQESIGLFHLM 281

Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK-KVFERMKVKDVVSWNAMVTG 289
             +   Q D  ++V+ LS+C+ LG    G  C + + A    F+     +VV   +++  
Sbjct: 282 M-ESGFQPDSATIVSLLSSCSQLGALDFG--CWLHDYADGNGFD----LNVVLGTSLINM 334

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y+R G+   A  +F  M++ NV    VTW+A+I+GY   G+G +A+++F +M+  G  PN
Sbjct: 335 YTRCGNVSKAREVFDSMKERNV----VTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 390

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
            +T V++LS CA  G +  G+       +    V G   +  MV     DM+ +   ++ 
Sbjct: 391 NITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMV-----DMFGRAGLLND 445

Query: 410 ARVMFDAIAPKNRDVATWTVMIGS 433
           A        PK    A WT M+G+
Sbjct: 446 AYQFIKKFIPKEPGPAVWTSMLGA 469


>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
 gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
          Length = 1121

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/795 (33%), Positives = 414/795 (52%), Gaps = 39/795 (4%)

Query: 54   YLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVF-WWNALIRRA 110
            ++ H  I+   L    V  + L++ +        A  + ++++     V   WNA+I   
Sbjct: 352  WMAHDYIVGGGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAY 411

Query: 111  VRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170
                    A  L   +  +G  P+  TF   L AC  L   R   ++H +I  SGFD  V
Sbjct: 412  AHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQDGR---ALHLLIHESGFDQEV 468

Query: 171  FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
             V NAL+ MY +C +L  + +LF EM +    D+ SWN+ +AA++  G ++  + L  +M
Sbjct: 469  SVANALVTMYGKCGSLLDSAKLFSEMAEK---DLASWNSAIAAHSYHGRSDECIKLLDQM 525

Query: 231  TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY 290
             G+  +  + V+ + AL++C    +   G    +M E  K+ +     D V  +A++  Y
Sbjct: 526  RGEGFLY-EKVTFLTALNSCTDPASLQDGV---LMHE--KIVQCGYEADTVVASAVINMY 579

Query: 291  SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
             R G  + A  +F +++      +V+ W+ ++  Y Q G   + ++ FR M   GL+P  
Sbjct: 580  GRCGGLDRAREIFTRVK----TFDVILWTGMLTVYCQLGRTKQVMEHFRSMLHEGLKPTG 635

Query: 351  VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
            VTLV+L++  A  G           +    L+ +     + MV N+LI+M+++ +S+  A
Sbjct: 636  VTLVNLITCVADSGLEHFRDGVWISS----LAWESGLESETMVANSLIEMFSEFRSLSQA 691

Query: 411  RVMFDAIAPKNRDVATWTVMIGSYSQNG-GANDALALFPQMFQQDKLVKPNAFTLSCALM 469
            R +FD    K+  VA  T M+ +Y +   G   AL LF +M  +   ++P++ TL  A+ 
Sbjct: 692  RAIFDRNPEKS--VALHTTMLAAYVKGERGKEAALTLFARMLLEG--LEPSSVTLVTAMS 747

Query: 470  ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
            AC  LA     +++H        E     VAN L+DMY ++GD+DTAR +FD   +RNV 
Sbjct: 748  ACGGLADPSSSKRVHERARELGLESE-TCVANGLVDMYGKAGDVDTARYIFDRALRRNVT 806

Query: 530  SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589
            +W ++   Y   G+     W    M+++G  PD VTF+ LL  C HSG++++    F +M
Sbjct: 807  TWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPDSVTFVSLLSVCGHSGLLEEARYNFVAM 866

Query: 590  SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP--TPIIWVALLNGCRIHANV 647
             +EFGI    +HY+C++DLL RA  L +A + I  + +    +  +W+ALL  CR   N 
Sbjct: 867  RREFGIDPSPKHYSCVIDLLARAGELQQAEDFIARISVSSPASSPMWMALLGACRSLGNS 926

Query: 648  ELGELAANRL------LELESEKDGS--YTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
                  A R       +E  S+ D S  +  L+NI A +G W +   IR  M   G++K 
Sbjct: 927  SSRARRAARNAMDVEKMEPRSQHDPSAAHVALANICAASGNWDEALSIRKAMAEKGLRKE 986

Query: 700  PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
            PG S +  K     F  GDR HP+ ++IY  L  L + +   GYV  T    H+V + +K
Sbjct: 987  PGRSLIAVKNRLHEFVAGDRDHPRREEIYAELRRLERAMVDRGYVVDTGMVTHNVGEADK 1046

Query: 760  GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
             DLL  HSEKLA+A+G+L+T PG+ +RI KNLR CGDCH+AI  IS I   EI++RDSNR
Sbjct: 1047 RDLLGCHSEKLAVAFGVLSTPPGSSLRIIKNLRACGDCHTAIKLISAIEGREIVVRDSNR 1106

Query: 820  FHHFKEGSCTCKGYW 834
            FHHF+ GSC+C  YW
Sbjct: 1107 FHHFRNGSCSCGDYW 1121



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/550 (27%), Positives = 258/550 (46%), Gaps = 36/550 (6%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           ++F W +++       L   A   F QM++ G  PD   +  +LK CG L     G  +H
Sbjct: 86  NIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVYARLLKECGRLGDLAQGKRLH 145

Query: 159 AVICSSGF-------DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
           A I  SG            F+ N L+ MY +C     A++ FD +      +I SW +I+
Sbjct: 146 AQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFDSIAHK---NIFSWTSIL 202

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV 271
            AY  +G     L  F +M     V+ D +  + AL+ C  L     G         +++
Sbjct: 203 VAYFHAGLHAQALERFHQMI-KAGVEPDRLVFLAALNVCGILKRLEDGAGI-----HRQI 256

Query: 272 FERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
            ++    D+   NA+V+ Y + G  + A  LF  + +     NV++W+ +++ +A+ G  
Sbjct: 257 QDKPLDSDLEIGNALVSMYGKCGRLDLAKELFDCLERR----NVISWTILVSVFAENGRR 312

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK-ETHCYTIKRVLSVDGSHPDD 390
            E   + R M   G++P+ V L++LL+ C+S G L       H Y       V G    +
Sbjct: 313 RETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAHDYI------VGGGLDRE 366

Query: 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV-ATWTVMIGSYSQNGGANDALALFPQ 449
            +V  AL+ M+A+C  VD AR +F+ +A  +  V   W  MI +Y+  G + +AL L   
Sbjct: 367 AVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDS 426

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           +  Q + VKPN  T   +L AC   ++L+ GR +H  +  + ++  +  VAN L+ MY +
Sbjct: 427 L--QLQGVKPNCITFISSLGAC---SSLQDGRALHLLIHESGFDQEVS-VANALVTMYGK 480

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G +  +  +F  + ++++ SW S +  +  HG  D+     DQMR EG   + VTFL  
Sbjct: 481 CGSLLDSAKLFSEMAEKDLASWNSAIAAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTA 540

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           L +C+    +  G+   + +  + G  A     + ++++ GR   LD A E+   +    
Sbjct: 541 LNSCTDPASLQDGVLMHEKIV-QCGYEADTVVASAVINMYGRCGGLDRAREIFTRVKTFD 599

Query: 630 TPIIWVALLN 639
             I+W  +L 
Sbjct: 600 V-ILWTGMLT 608



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 139/587 (23%), Positives = 256/587 (43%), Gaps = 63/587 (10%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGF-------DSNVFVCNALMAMYARCDTLSYA 189
           ++  +LK CG L     G  +HA I  SG            F+ N L+ MY +C     A
Sbjct: 16  SYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEA 75

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
           ++ FD +      +I SW +I+ AY  +G     L  F +M     V+ D +     L  
Sbjct: 76  QRAFDSIAHK---NIFSWTSILVAYFHAGLHAQALERFHQMI-KAGVEPDRLVYARLLKE 131

Query: 250 CASLGTWSRGKQ--CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
           C  LG  ++GK+    + E    + +R +       N +V  Y + G  ++A   F  + 
Sbjct: 132 CGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFDSIA 191

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            +    N+ +W++++  Y   G   +AL+ F QM   G+EP+ +  ++ L+ C  +  L 
Sbjct: 192 HK----NIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLE 247

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G   H     + L        DL + NAL+ MY KC  +D+A+ +FD +  + R+V +W
Sbjct: 248 DGAGIHRQIQDKPLD------SDLEIGNALVSMYGKCGRLDLAKELFDCL--ERRNVISW 299

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-HAY 486
           T+++  +++NG   +   L   M  +   +KP+   L   L  C+    L     + H Y
Sbjct: 300 TILVSVFAENGRRRETWGLLRSMAVEG--IKPDKVLLLTLLNVCSSRGVLDEDSWMAHDY 357

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---VVSWTSLMTGYGMHGL 543
           ++    +     VA  L+ M++R G +D AR +F+ +   +   +  W +++T Y   G 
Sbjct: 358 IVGGGLDRE-AVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGC 416

Query: 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACS------------HSGMVDQGLKYFDSMSK 591
             +A +  D ++ +G+ P+ +TF+  L ACS            H    DQ +   +++  
Sbjct: 417 SKEALFLLDSLQLQGVKPNCITFISSLGACSSLQDGRALHLLIHESGFDQEVSVANALVT 476

Query: 592 EFGISARAEHYACIVDLLGRAN---------------RLDEAVELIEGMPMEP---TPII 633
            +G        A +   +   +               R DE ++L++ M  E      + 
Sbjct: 477 MYGKCGSLLDSAKLFSEMAEKDLASWNSAIAAHSYHGRSDECIKLLDQMRGEGFLYEKVT 536

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSY-TLLSNIYANAG 679
           ++  LN C   A+++ G L   ++++   E D    + + N+Y   G
Sbjct: 537 FLTALNSCTDPASLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCG 583



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 142/302 (47%), Gaps = 13/302 (4%)

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI-NALIDMYAK 403
           G++    +   LL  C  +G L  GK  H    +  L +D         + N L+ MY K
Sbjct: 9   GVDDACRSYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGK 68

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           C   D A+  FD+IA KN  + +WT ++ +Y   G    AL  F QM +    V+P+   
Sbjct: 69  CGRTDEAQRAFDSIAHKN--IFSWTSILVAYFHAGLHAQALERFHQMIKAG--VEPDRLV 124

Query: 464 LSCALMACARLAALRFGRQIHAYV------LRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
            +  L  C RL  L  G+++HA +      L ++ E    F+ NCL+ MY + G  D A+
Sbjct: 125 YARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQ 184

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
             FD++  +N+ SWTS++  Y   GL  +A   F QM K G+ PD + FL  L  C    
Sbjct: 185 RAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILK 244

Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            ++ G      + ++  + +  E    +V + G+  RLD A EL + +      I W  L
Sbjct: 245 RLEDGAGIHRQI-QDKPLDSDLEIGNALVSMYGKCGRLDLAKELFDCLERRNV-ISWTIL 302

Query: 638 LN 639
           ++
Sbjct: 303 VS 304


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/766 (33%), Positives = 399/766 (52%), Gaps = 37/766 (4%)

Query: 73   LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
            +I+ Y      S A ++ +RI      V  WN ++  +   +        F  M+  G  
Sbjct: 376  IISMYAKCGFFSAAWAVFRRIRW-KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGID 434

Query: 133  PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARCDTLSYARQ 191
            P++ +F  +L AC    +   G  +H++I +   D     V   L++MY +C ++S A  
Sbjct: 435  PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAEL 494

Query: 192  LFDEMFQPGICDIVSWNTIVAAYAQ---SGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
            +F EM  P    +V+WN ++ AYAQ   S +A G LM    + G V    D +S  + LS
Sbjct: 495  VFKEMPLPSR-SLVTWNVMLGAYAQNDRSKEAFGALM--EMLQGGV--LPDALSFTSVLS 549

Query: 249  ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
            +C         + C ++E           +      A+++ + R    E A ++F +M  
Sbjct: 550  SCYCSQEAQVLRMC-ILESG--------YRSACLETALISMHGRCRELEQARSVFNEMDH 600

Query: 309  ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             +V    V+W+A+++  A+     E  ++FR+MQ  G+ P+  TL + L  C +   L L
Sbjct: 601  GDV----VSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGL 656

Query: 369  GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
            GK  H    +  L  D      + V NAL++MY+ C     A   F+ +  K RD+ +W 
Sbjct: 657  GKVIHACVTEIGLEAD------IAVENALLNMYSNCGDWREALSFFETM--KARDLVSWN 708

Query: 429  VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +M  +Y+Q G A +A+ LF QM  Q + VKP+  T S  L      A +  G+  HA   
Sbjct: 709  IMSAAYAQAGLAKEAVLLFRQM--QLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAA 766

Query: 489  RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
             +  +  +  VA  L+ +Y++ G +D A  +F       VV   +++     HG  ++A 
Sbjct: 767  ESGLDSDVS-VATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAV 825

Query: 549  WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
              F +M++EG+ PD  T + ++ AC H+GMV++G   F +M + FGIS   EHYAC VDL
Sbjct: 826  KMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDL 885

Query: 609  LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
            LGRA +L+ A ++I  MP E   ++W +LL  C++  + ELGE  A R+LEL+     ++
Sbjct: 886  LGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAH 945

Query: 669  TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
             +LSNIY   G+WKD    R  M    VK  PG SW +  +    F  GDR+HP++ +IY
Sbjct: 946  VVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIY 1005

Query: 729  EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
             +L  L   ++  GY         DV+DE K   L  HSE++A+A+G++ T P T ++I 
Sbjct: 1006 VVLDKLELLMRRAGYEADKGL---DVEDELKEKALGYHSERIAIAFGLIATPPETTLKIV 1062

Query: 789  KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+CGDCH+A  +ISM++  EII+RDS RFHHF  G+C+CK  W
Sbjct: 1063 KNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 176/667 (26%), Positives = 288/667 (43%), Gaps = 79/667 (11%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM-RRGW 131
           LI  YV   +   A ++  ++     +V  W ALI    +      AF LF  M+     
Sbjct: 66  LINMYVRCGSLEEAHAIFSKMEER--NVVSWTALISANAQCGAFARAFALFRTMLLESSA 123

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD----SNVFVCNALMAMYARCDTLS 187
            P+ YT   +L AC        G S+HA+I   G +    +   V NA++ MYA+C +L 
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLE 183

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGD-AEGGLMLFARMTGDVKVQGDGVSLVNA 246
            A  +F  + +    D+VSW  +  AYAQ        L +F  M     +  + ++ + A
Sbjct: 184 DAIAVFLAIPEK---DVVSWTAMAGAYAQERRFYPDALRIFREMLLQ-PLAPNVITFITA 239

Query: 247 LSACASL--GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           L AC SL  GTW       ++ EA   F      D ++ NA++  Y + G +E A+++FK
Sbjct: 240 LGACTSLRDGTWLH----SLLHEASLGF------DPLASNALINMYGKCGDWEGAYSVFK 289

Query: 305 KM--RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
            M  RQE   L++V+W+A+I+   + G   +A+ +FR+++  G+ PN VTL+++L+  A+
Sbjct: 290 AMASRQE---LDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA 346

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
            G            I      +  +  D+++ NA+I MYAKC     A  +F  I  K  
Sbjct: 347 SGVDFGAARGFHGRI-----WESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKC- 400

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           DV +W  M+G+          +  F  M      + PN  +    L AC+   AL FGR+
Sbjct: 401 DVISWNTMLGASEDRKSFGKVVNTFHHMLLAG--IDPNKVSFIAILNACSNSEALDFGRK 458

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN--LKQRNVVSWTSLMTGYGM 540
           IH+ +L  + + +   VA  L+ MY + G I  A +VF    L  R++V+W  ++  Y  
Sbjct: 459 IHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQ 518

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA--CSHSGMV------------------- 579
           +    +A  A  +M + G+ PD ++F  +L +  CS    V                   
Sbjct: 519 NDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETAL 578

Query: 580 ----------DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME- 628
                     +Q    F+ M     +S     +  +V          E   L   M +E 
Sbjct: 579 ISMHGRCRELEQARSVFNEMDHGDVVS-----WTAMVSATAENRDFKEVHNLFRRMQLEG 633

Query: 629 --PTPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIYANAGRWKDVA 685
             P        L+ C     + LG++    + E+  E D      L N+Y+N G W++  
Sbjct: 634 VIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREAL 693

Query: 686 RIRSLMK 692
                MK
Sbjct: 694 SFFETMK 700



 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 149/608 (24%), Positives = 284/608 (46%), Gaps = 29/608 (4%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y    +   A+++   I P    V W       A   R   +A R+F +M+ +   
Sbjct: 172 MINMYAKCGSLEDAIAVFLAI-PEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF   L AC  L   R G+ +H+++  +    +    NAL+ MY +C     A  +
Sbjct: 231 PNVITFITALGACTSL---RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSV 287

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M      D+VSWN +++A  ++G     + +F R+  +  ++ + V+L+  L+A A+
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLE-GMRPNSVTLITILNALAA 346

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
            G    G   G      +++E   ++DVV  NA+++ Y++ G F  A+A+F+++R    K
Sbjct: 347 SGV-DFGAARGFH---GRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRW---K 399

Query: 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            +V++W+ ++     R    + ++ F  M   G++PN V+ +++L+ C++  AL  G++ 
Sbjct: 400 CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKI 459

Query: 373 HCYTIKRVLS-VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
           H   + R    V+ S      V   L+ MY KC S+  A ++F  +   +R + TW VM+
Sbjct: 460 HSLILTRRRDYVESS------VATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVML 513

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
           G+Y+QN  + +A     +M Q   L  P+A + +  L +C      +  + +   +L + 
Sbjct: 514 GAYAQNDRSKEAFGALMEMLQGGVL--PDALSFTSVLSSC---YCSQEAQVLRMCILESG 568

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
           Y      +   LI M+ R  +++ AR VF+ +   +VVSWT++++    +    + H  F
Sbjct: 569 YRS--ACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLF 626

Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
            +M+ EG+ PD  T    L  C  S  +  G K   +   E G+ A       ++++   
Sbjct: 627 RRMQLEGVIPDKFTLATTLDTCLASTTLGLG-KVIHACVTEIGLEADIAVENALLNMYSN 685

Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
                EA+   E   M+   ++   +++     A +    +   R ++LE  K    T  
Sbjct: 686 CGDWREALSFFE--TMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFS 743

Query: 672 SNIYANAG 679
           + +  + G
Sbjct: 744 TTLNVSGG 751



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 248/511 (48%), Gaps = 31/511 (6%)

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
           EYT   +L++C +      G   H +I ++G + ++F+ N L+ MY RC +L  A  +F 
Sbjct: 27  EYTA--LLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFS 84

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           +M +    ++VSW  +++A AQ G       LF  M  +     +  +LV  L+ACA+  
Sbjct: 85  KMEER---NVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 255 TWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
             + G+    M+ E     ER      +  NAM+  Y++ GS EDA A+F  + ++    
Sbjct: 142 DLAIGRSIHAMIWELG--LERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEK---- 195

Query: 314 NVVTWSAVIAGYAQ-RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           +VV+W+A+   YAQ R    +AL +FR+M    L PNV+T ++ L  C S   L  G   
Sbjct: 196 DVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWL 252

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMI 431
           H    +  L  D   P   +  NALI+MY KC   + A  +F A+A +   D+ +W  MI
Sbjct: 253 HSLLHEASLGFD---P---LASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMI 306

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG--RQIHAYVLR 489
            +  + G   DA+A+F ++  +   ++PN+ TL   L A A  + + FG  R  H  +  
Sbjct: 307 SASVEAGRHGDAMAIFRRLRLEG--MRPNSVTLITILNALAA-SGVDFGAARGFHGRIWE 363

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAH 548
           + Y +    + N +I MY++ G    A  VF  ++ + +V+SW +++          K  
Sbjct: 364 SGY-LRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVV 422

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F  M   G+ P+ V+F+ +L ACS+S  +D G K    +         +     +V +
Sbjct: 423 NTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSM 482

Query: 609 LGRANRLDEAVELIEGMPMEPTPII-WVALL 638
            G+   + EA  + + MP+    ++ W  +L
Sbjct: 483 YGKCGSISEAELVFKEMPLPSRSLVTWNVML 513


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/481 (44%), Positives = 302/481 (62%), Gaps = 12/481 (2%)

Query: 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416
           L  C   G LL G + H     ++ S DG   D L+ +  L+D+Y+ C++   A  +FD 
Sbjct: 120 LKCCIKSGDLLGGLQIH----GKIFS-DGFLSDSLL-MTTLMDLYSTCENSTDACKVFDE 173

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ-DKLVKPNAFTLSCALMACARLA 475
           I    RD  +W V+I  Y +N    D L LF +M    D+ VKP+  T   AL ACA L 
Sbjct: 174 IP--QRDTVSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLG 231

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
           AL FG+Q+H ++  N     +  ++N L+ MYSR G +D A  VF+ +++RNVVSWT+++
Sbjct: 232 ALDFGKQVHDFIDENGLSGALN-LSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMI 290

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM-SKEFG 594
           +G  M+G G +A  AF++M K G++P+  T   LL ACSHSG+VD+G+ +FD M S EF 
Sbjct: 291 SGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFK 350

Query: 595 ISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
           I     HY CIVDLLGRA  LD+A  LI+ M M+P   IW  LL  CR+H NVELGE   
Sbjct: 351 IKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVI 410

Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
             L+E ++E+ G Y LL N Y++ G+W+ V  +RSLMK   ++  PGCS ++ +     F
Sbjct: 411 AHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEF 470

Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLALA 773
            V D +HP+ ++IY++LA + Q++K  GYV + +  LH++D +EEKG  L  HSEKLA+A
Sbjct: 471 IVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIA 530

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +GIL T P T IR+TKNLR C DCH+   F+S + +  +I+RD +RFHHFK GSC+C  +
Sbjct: 531 FGILVTPPETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDF 590

Query: 834 W 834
           W
Sbjct: 591 W 591



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 172/352 (48%), Gaps = 23/352 (6%)

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGELP 149
           QR++P+   +   N +IR     + P   FRLF  + R    P +  +  F LK C +  
Sbjct: 71  QRLNPT---LSHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSG 127

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
               G  +H  I S GF S+  +   LM +Y+ C+  + A ++FDE+ Q    D VSWN 
Sbjct: 128 DLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQR---DTVSWNV 184

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVK--VQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           +++ Y ++      L+LF +M  DV   V+ D V+ + AL ACA+LG    GKQ     +
Sbjct: 185 LISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFID 244

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              +   + +      N +V+ YSR GS + A+ +F +MR+ NV    V+W+A+I+G A 
Sbjct: 245 ENGLSGALNLS-----NTLVSMYSRCGSMDKAYEVFNRMRERNV----VSWTAMISGLAM 295

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G G EA++ F +M   G+ P   TL  LLS C+  G +  G         R+ S +   
Sbjct: 296 NGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGM----MFFDRMRSGEFKI 351

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
             +L     ++D+  + + +D A  +  ++  K  D   W  ++G+   +G 
Sbjct: 352 KPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKP-DSTIWRTLLGACRVHGN 402


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/526 (41%), Positives = 315/526 (59%), Gaps = 12/526 (2%)

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           E  K +  TWS+VI+ +AQ      AL  FR+M   G+ P+     S    C  +    +
Sbjct: 85  ETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDV 144

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK  HC      L+V   +  D+ V ++L+DMYAKC  +  AR +FD +  +N  V +W+
Sbjct: 145 GKSVHC------LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERN--VVSWS 196

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI  Y+Q     +AL LF Q   +D  V  N FT S  +  C+    L  G+ IH   L
Sbjct: 197 GMIYGYAQLDDGVEALTLFKQALIED--VDVNDFTFSSVIRVCSSSTFLELGKLIHGLCL 254

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  ++    FV + LI +YS+ G I+ A  VFD +  RN+  W S++     H    +  
Sbjct: 255 KMSFDS-SSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVF 313

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F++M   G+ P+ ++FL +LYACSH+G+V++G +YF S+ +++GI    EHYA +VDL
Sbjct: 314 GLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDL 372

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGRA +L EAV +I+ MPM PT  +W ALL GCRIH + E+    A+R+LE++S   G +
Sbjct: 373 LGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLH 432

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LLSN YA AGR+++ AR+R +++  GVKK  G SWV+      TF  GDR+H +  +IY
Sbjct: 433 VLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           E L  L + ++  GYV  TSF L  VD EEK + +  HSE+LA+A+G++T  PG PIR+ 
Sbjct: 493 EKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVM 552

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CGDCH+AI F+S      +I+RD+NRFH F++G C+C  YW
Sbjct: 553 KNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 173/368 (47%), Gaps = 39/368 (10%)

Query: 13  SKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLR--QCKSLTQVYLIHQQIIVQNLTHVP- 69
           S+ PL  N    N +          +I +LLL   + +SL Q   +H  I+   L  +P 
Sbjct: 12  SQNPLNQNSFEQNYR----------QICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPL 61

Query: 70  -PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
              +LI  Y     P  +L +    +P   S   W+++I    +   P  A + F +M+ 
Sbjct: 62  VSHNLINLYSKTQLPLFSLQVFDE-TPKKSST-TWSSVISAFAQNEAPLLALQFFRRMLN 119

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            G  PD++ +P   KACG L  S  G SVH +   +G+  +VFV ++L+ MYA+C  +  
Sbjct: 120 DGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGD 179

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR-MTGDVKVQGDGVSLVNAL 247
           AR LFDEM +    ++VSW+ ++  YAQ  D    L LF + +  DV V  +  +  + +
Sbjct: 180 ARHLFDEMPER---NVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV--NDFTFSSVI 234

Query: 248 SACASLGTWSRGK----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
             C+S      GK     C  M      F           +A+++ YS+ G  E A+ +F
Sbjct: 235 RVCSSSTFLELGKLIHGLCLKMSFDSSSF---------VGSALISLYSKCGVIEGAYQVF 285

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            ++   N+ L    W++++   AQ  H      +F +M   G++PN ++ +S+L  C+  
Sbjct: 286 DEIPTRNLGL----WNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHA 341

Query: 364 GALLLGKE 371
           G +  G+E
Sbjct: 342 GLVEKGRE 349



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 4/193 (2%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L++  R  +LR G Q+HA++L+   +  IP V++ LI++YS++     +  VFD   +++
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQT-IPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             +W+S+++ +  +     A   F +M  +G+ PD   +     AC      D G K   
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVG-KSVH 149

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CRIHAN 646
            ++ + G        + +VD+  +   + +A  L + MP E   + W  ++ G  ++   
Sbjct: 150 CLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMIYGYAQLDDG 208

Query: 647 VELGELAANRLLE 659
           VE   L    L+E
Sbjct: 209 VEALTLFKQALIE 221


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/678 (35%), Positives = 373/678 (55%), Gaps = 32/678 (4%)

Query: 164  SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGG 223
            SG   N+   N L+ MY +C     A ++FD M +    ++VSW  +++ +  +GD  G 
Sbjct: 398  SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPER---NVVSWTALMSGHVLNGDLNGS 454

Query: 224  LMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVS 282
            L LF  M G   +  +  +    L AC  L    +G Q  G     K  FE M    V  
Sbjct: 455  LSLFTEM-GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC--LKIGFEMM----VEV 507

Query: 283  WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
             N++V  YS+ G   +A  +F+ M    V  ++++W+A+IAGY   G+G  AL  F  MQ
Sbjct: 508  GNSLVDMYSKCGRINEAEKVFRWM----VGRSLISWNAMIAGYVHAGYGSRALATFGMMQ 563

Query: 343  FCGLE--PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDLMVINALID 399
               ++  P+  TL SLL  C+S G +  GK+ H + ++      G H P    +  +L+D
Sbjct: 564  EAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR-----SGFHCPSSATITGSLVD 618

Query: 400  MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
            +Y KC ++  AR  FD I  K + + +W+ +I  Y+Q G   +A+ LF ++  Q+   + 
Sbjct: 619  LYVKCGNLFSARKAFDQI--KEKTMISWSSLILGYAQEGDFVEAMGLFKRL--QELSSQI 674

Query: 460  NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
            ++F LS  +   A  A L+ G+Q+ A V++     L   V+N L+DMY + G +D A   
Sbjct: 675  DSFVLSSIIGVFADFALLQQGKQMQALVVKLP-SGLETSVSNSLVDMYLKCGLVDEAEKC 733

Query: 520  FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
            F  ++ ++V+SWT ++TGYG HGLG KA   F++M +  + PD V +L +L ACSHSGM+
Sbjct: 734  FAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMI 793

Query: 580  DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
             +G + F  + +  GI  R EHYAC+VDLLGRA RL EA  L++ MP++P   IW  LL+
Sbjct: 794  KEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLS 853

Query: 640  GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
             CR+H ++ELG+     LL ++ +   +Y ++SN+Y  AG W +    R L    G++K 
Sbjct: 854  LCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKE 913

Query: 700  PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK-AMGYVPQTSFALHDVDDEE 758
             G SWV+ +     F  G+ +HP +  I E L  + +R++  +GYV      LHD+DDE 
Sbjct: 914  AGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGLKHELHDIDDES 973

Query: 759  KGDLLFEHSEKLALAYGILT---TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILR 815
            K + L  HSEKLA+   + T      G  IR+ KNLR+C DCH  I  +S I     ++R
Sbjct: 974  KEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVR 1033

Query: 816  DSNRFHHFKEGSCTCKGY 833
            D+ RFH F++G C+C  Y
Sbjct: 1034 DAVRFHSFEDGCCSCGDY 1051



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 223/476 (46%), Gaps = 82/476 (17%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   V     + +  LF +M R+G +P+E+TF   LKACG L +   G  +H
Sbjct: 434 NVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIH 493

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                 GF+  V V N+L+ MY++C  ++ A ++F  M       ++SWN ++A Y  +G
Sbjct: 494 GFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGR---SLISWNAMIAGYVHAG 550

Query: 219 DAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTWSRGKQ---------------- 261
                L  F  M    +K + D  +L + L AC+S G    GKQ                
Sbjct: 551 YGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 610

Query: 262 ------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
                       CG +  A+K F+++K K ++SW++++ GY++ G F +A  LFK++++ 
Sbjct: 611 TITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQEL 670

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           + +++    S++I  +A        L   +QMQ                  A V  L  G
Sbjct: 671 SSQIDSFVLSSIIGVFAD----FALLQQGKQMQ------------------ALVVKLPSG 708

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
            ET                    V N+L+DMY KC  VD A   F  +  K  DV +WTV
Sbjct: 709 LETS-------------------VSNSLVDMYLKCGLVDEAEKCFAEMQLK--DVISWTV 747

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI  Y ++G    A+++F +M + +  ++P+       L AC+    ++ G ++ + +L 
Sbjct: 748 MITGYGKHGLGKKAVSIFNKMLRHN--IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 805

Query: 490 NQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG 542
            Q   + P V +  C++D+  R+G +  A+ + D +  + NV  W +L++   +HG
Sbjct: 806 TQ--GIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHG 859


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 387/706 (54%), Gaps = 37/706 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+A     S R G  +HA +   GF S+  + N L+ MYA+C  L  A ++FD M +  
Sbjct: 10  LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPER- 68

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
             ++VSW  ++  +   G+A   L LF  M      +G G S  N  +  A+L     G 
Sbjct: 69  --NVVSWTALMVGFLHHGEARECLRLFGEM------RGSGTS-PNEFTLSATLKACGGGT 119

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           + G+      V    +  DVV+ N++V  YS+     DA  +F  +   N+     TW++
Sbjct: 120 RAGVQIHGVCVRTGFEGHDVVA-NSLVVMYSKGRWTGDARRVFDVIPSRNL----ATWNS 174

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLE-PNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           +I+GYA  G G ++L VFR+MQ    E P+  T  SLL  C+ +GA   G + H      
Sbjct: 175 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHA----- 229

Query: 380 VLSVDGSHP-DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            ++V G  P  + ++  AL+D+Y KC  + VA  +FD +  + R+   WT +I  ++Q G
Sbjct: 230 AMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGL--ERRNAIQWTTVIVGHAQEG 287

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
              +A+ LF + +     V+ +   LS  +   A  A +  G+Q+H Y  +    + +  
Sbjct: 288 QVKEAMCLFRRFWSSG--VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVS- 344

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           VAN L+DMY + G    A   F  +  RNVVSWT+++ G G HG G +A   F++M+ EG
Sbjct: 345 VANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEG 404

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           +  D V +L LL ACSHSG+VD+  +YF  + ++  +  +AEHYAC+VDLLGRA  L EA
Sbjct: 405 VEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREA 464

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            ELI  MPMEPT  +W  LL+ CR+H +V +G    + LL ++ +   +Y +LSNI A A
Sbjct: 465 KELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEA 524

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFF-VGDRTHPQSQKIYEILAGLVQR 737
           G W++   IR  M+  G++K+ GCSW +  +    F+  GD  HPQ+  I   L  +  R
Sbjct: 525 GEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEAR 584

Query: 738 IKA-MGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP--------IRIT 788
           ++  +GY      ALHDVD+E + + L EHSE+LA+   +L    G          +R+ 
Sbjct: 585 MRERLGYSGDARCALHDVDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEVVRVY 644

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CGDCH  +  +S ++   +++RD+NRFH F+ G+C+C+ YW
Sbjct: 645 KNLRVCGDCHEFLKGLSAVVRRVVVVRDANRFHRFQNGACSCRDYW 690



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 208/450 (46%), Gaps = 35/450 (7%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  W AL+   +         RLF +M   G  P+E+T    LKACG    +R G  +H
Sbjct: 69  NVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIH 126

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            V   +GF+ +  V N+L+ MY++      AR++FD +      ++ +WN++++ YA +G
Sbjct: 127 GVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSR---NLATWNSMISGYAHAG 183

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                L++F  M      Q D  +  + L AC+ LG    G Q         V   M V+
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQ---------VHAAMAVR 234

Query: 279 DVV-SWNAMVTG-----YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
            V  + NA++ G     Y +      A  +F  + +     N + W+ VI G+AQ G   
Sbjct: 235 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERR----NAIQWTTVIVGHAQEGQVK 290

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
           EA+ +FR+    G+  +   L S+++  A    +  GK+ HCYT K    +D S      
Sbjct: 291 EAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVS------ 344

Query: 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452
           V N+L+DMY KC     A   F  +  +N  V +WT MI    ++G   +A+ LF +M  
Sbjct: 345 VANSLVDMYLKCGLTGEAGRRFREMPARN--VVSWTAMINGVGKHGHGREAIDLFEEM-- 400

Query: 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512
           Q + V+ +       L AC+    +   R+  + + +++          C++D+  R+G+
Sbjct: 401 QAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGE 460

Query: 513 IDTARVVFDNLKQRNVVS-WTSLMTGYGMH 541
           +  A+ +  ++     V  W +L++   +H
Sbjct: 461 LREAKELILSMPMEPTVGVWQTLLSACRVH 490


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 324/560 (57%), Gaps = 29/560 (5%)

Query: 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
           S + S   A  +F   +  NV L    ++A+I G     +  + + ++ QM    L P+ 
Sbjct: 75  SNLNSIGYASKIFSHTQNPNVYL----YTALIDGLVLSCYYTDGIHLYYQMINSSLVPDS 130

Query: 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410
             + S+L  C    AL  G+E H   +K  LS + S      +   LI++Y KC + + A
Sbjct: 131 YAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRS------IRIKLIELYGKCGAFEDA 184

Query: 411 RVMFDAIAPKN----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           R +FD +  ++                +D   WT MI    +NG +N AL +F  M ++D
Sbjct: 185 RRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRED 244

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             V PN  T+ C L AC+ L AL+ GR + +Y+ +++ E L  FV   LI+MYSR GDID
Sbjct: 245 --VMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIE-LNHFVGGALINMYSRCGDID 301

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A+ VF+ +K++NV+++ S++ G+ +HG   +A   F  + K+G  P  VTF+ +L ACS
Sbjct: 302 EAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACS 361

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H G+ + G + F SM+K++GI  + EHY C+VDLLGR  RL+EA   I  M + P  ++ 
Sbjct: 362 HGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVML 421

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
            ALL+ C+IH N+EL E  A  L+  ++   G+Y LLSN Y+++G+WK+ A +R+ M+  
Sbjct: 422 GALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREE 481

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           G++K PGCS ++       F +GD  HPQ +KIY+ L  L Q ++  GY P T   LHD+
Sbjct: 482 GIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDI 541

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           +  EK   L  HSE+LA+ YG+++T P T +R+ KNLR+C DCH  I  IS I   +I++
Sbjct: 542 EKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVV 601

Query: 815 RDSNRFHHFKEGSCTCKGYW 834
           RD NRFHHF+ G C+C  YW
Sbjct: 602 RDRNRFHHFENGVCSCGDYW 621



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 210/463 (45%), Gaps = 59/463 (12%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPS---HLIAAYVSHNAPSPALSLLQRISPSPFS 99
           LL+ CK   Q+  I+ +II +N  H  P     L+    + N+   A  +    + +P +
Sbjct: 38  LLQNCKHNNQIPPIYAKII-RNHHHQDPFVVFELLRVCSNLNSIGYASKIFSH-TQNP-N 94

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V+ + ALI   V      +   L+ QM+     PD Y    VLKACG   + + G  VH+
Sbjct: 95  VYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHS 154

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM---------------FQPGICDI 204
            +   G  SN  +   L+ +Y +C     AR++FDEM               F  GI D 
Sbjct: 155 QVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDT 214

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---- 260
           V W  ++    ++G++   L +F  M  +  V  + V++V  LSAC+ LG    G+    
Sbjct: 215 VCWTAMIDGLVRNGESNRALEVFRNMQRE-DVMPNEVTIVCVLSACSELGALQLGRWVRS 273

Query: 261 ----------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
                                 +CG ++EA++VFE+MK K+V+++N+M+ G++  G   +
Sbjct: 274 YMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVE 333

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLL 357
           A  LF+ + ++    + VT+  V+   +  G      ++F  M +  G+EP +       
Sbjct: 334 AVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHY---- 389

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA-RVMFDA 416
            GC       LG+    Y+  R++ V    PD +M + AL+       ++++A RV    
Sbjct: 390 -GCMVDLLGRLGRLEEAYSFIRMMKVA---PDHVM-LGALLSACKIHGNLELAERVAKSL 444

Query: 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           +A KN D  T+ ++  +YS +G   +A  +   M ++    +P
Sbjct: 445 VACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEP 487


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 329/569 (57%), Gaps = 42/569 (7%)

Query: 268 AKKVFERMK-VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           A++VF+R+    DVV +N ++ GY+R  +                           AG A
Sbjct: 87  ARQVFDRIPGPGDVVWYNTLLRGYARCSA---------------------------AGGA 119

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
            R    EA  VF +M   G+ P+  T VSLL  CA+  A   G++ H   +K V + +  
Sbjct: 120 -RPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVK-VGAAEHE 177

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
           +     V+  LI+MYA+C     AR MF  +      V ++  MI +  ++    +AL L
Sbjct: 178 Y-----VLPTLINMYAECGDARAARTMFGRV--DGECVVSYNAMITAAVRSSRPGEALVL 230

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
           F +M  Q K +K  + TL   L ACA L AL  GR IH YV + Q + L+  V   LIDM
Sbjct: 231 FREM--QAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVK-VNTALIDM 287

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           Y + G ++ A  VF  ++ R+  +W+ ++  Y  H  G +A   F++M+K+G+ PD VTF
Sbjct: 288 YGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTF 347

Query: 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
           L +LYACSHSG+V +GL+YFDSM +EFG+    +HY C+ DLL R+ +LD A E I+ +P
Sbjct: 348 LGVLYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELP 406

Query: 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686
           ++PT I+W  LL+ C    + +LG+    R+LEL+    G Y + SN+ AN GRW+++ R
Sbjct: 407 IKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNR 466

Query: 687 IRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           +R LM   GV K PGCS ++       FF GD  HP+S     ++ G+++++K  GYVP 
Sbjct: 467 VRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPN 526

Query: 747 TSFALH-DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
           TS   H ++ +EEK   L  HSEKLA+++G+L T+PGT +R+ KNLR+C DCHS    +S
Sbjct: 527 TSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVS 586

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           M+ N  IILRD NRFHHF++G C+C  YW
Sbjct: 587 MVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 189/443 (42%), Gaps = 79/443 (17%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPA-LSLLQRI---SPSP 97
           L QC +L  +  +H   +   L   P   + L+       A  PA LS  +++    P P
Sbjct: 38  LPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGP 97

Query: 98  FSVFWWNALIRRAVRL------RLP-DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150
             V W+N L+R   R       R P + A R+F++M+  G  PD YTF  +LKAC    +
Sbjct: 98  GDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARA 157

Query: 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTI 210
              G   H V    G   + +V   L+ MYA C     AR +F  +   G C +VS+N +
Sbjct: 158 GEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRV--DGEC-VVSYNAM 214

Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---------- 260
           + A  +S      L+LF  M     ++   V+L++ LSACA LG    G+          
Sbjct: 215 ITAAVRSSRPGEALVLFREMQAK-GLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQ 273

Query: 261 ----------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
                           +CG +E+A  VF+ M+ +D  +W+ M+  Y+      +A +LF+
Sbjct: 274 LDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFE 333

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL------------------ 346
           +M+++ +K + VT+  V+   +  G   E L  F  M+  GL                  
Sbjct: 334 EMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSG 393

Query: 347 --------------EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392
                         +P  +   +LLS C S G   LGK+      +R+L +D SH  D +
Sbjct: 394 QLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQ----VFERILELDDSHGGDYV 449

Query: 393 VINALIDMYAKCKSVDVARVMFD 415
           + + L     + + ++  R + +
Sbjct: 450 IFSNLCANTGRWEEMNRVRKLMN 472



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+ +I           A  LF +M ++G  PD+ TF  VL AC        G      + 
Sbjct: 312 WSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR 371

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G    +     +  + AR   L  A +  DE+  P     + W T+++A    GDA+ 
Sbjct: 372 EFGLVPGIKHYGCVADLLARSGQLDRAYEFIDEL--PIKPTAILWRTLLSACGSRGDADL 429

Query: 223 GLMLFARMTG-DVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
           G  +F R+   D    GD V   N    CA+ G W         EE  +V + M  K VV
Sbjct: 430 GKQVFERILELDDSHGGDYVIFSN---LCANTGRW---------EEMNRVRKLMNEKGVV 477


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/674 (35%), Positives = 367/674 (54%), Gaps = 49/674 (7%)

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           ARQ+FD + Q    +  SW+ +V  Y Q+   +  L ++  M  + ++  D  +L + L+
Sbjct: 1   ARQVFDRIKQR---NAFSWSILVECYVQNAMYQEALEVYKEMVRE-EISIDAYTLSSVLA 56

Query: 249 ACASLGTWSRGK--------------------------QCGMMEEAKKVFERM-KVKDVV 281
           AC  L     G+                          +CG +EEA+ VF  M  ++D++
Sbjct: 57  ACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDII 116

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           S  AM+  Y   GS +D+ +LF  M   +VK +VV+W+A+IA Y   GH  +A  +F +M
Sbjct: 117 SVTAMIGAY--CGSLKDSKSLFLTM---DVK-DVVSWNAMIAAYTLYGHDKDAFSLFHRM 170

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              G  P++ T  S+L  CAS   L  G+  H     R          D  + N LI MY
Sbjct: 171 CTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR------GFDRDFAMQNNLISMY 224

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            +C S++ AR  F +I  K  ++  W  M+ +Y+Q     DAL L+  M  +     P+ 
Sbjct: 225 TRCGSLESARRYFYSIEKK--ELGAWNTMLAAYAQFDKGKDALFLYKNMLLEG--FTPDR 280

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
           FT S  + +CA L ALR G+ IH       +E  +  +   L++MY++ G +  A+  FD
Sbjct: 281 FTFSSVVDSCASLGALREGKFIHECSTSCGFEKDV-ILGTALVNMYAKCGSLADAKKSFD 339

Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
            +  ++VVSW++++     HG  ++A      M  +G+A + VT   +L+ACSH G + +
Sbjct: 340 GISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYE 399

Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
           G+ YF  +S++FGI    E+    +DLLGRA  L EA  ++  MP + + +  V LL GC
Sbjct: 400 GIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGC 459

Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
           ++H +V  G+    R++ LE E  GSY LL+N+YA AGRW DVA++R  M+  GVK++ G
Sbjct: 460 KVHGDVRRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTG 519

Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK-AMGYVPQTSFALHDVDDEEKG 760
           CS ++ ++    F VGD ++P++ +I   L  L  R+K   GYVP T    HDV D++K 
Sbjct: 520 CSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKE 579

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
           +LL  HSEK+A+ +G++T+ PG+ +RI KNLR+C DCH+     S I    II+RD  RF
Sbjct: 580 ELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRF 639

Query: 821 HHFKEGSCTCKGYW 834
           HHF+ G C+C  YW
Sbjct: 640 HHFEGGICSCGDYW 653



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 210/477 (44%), Gaps = 58/477 (12%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           + F W+ L+   V+  +   A  ++ +M+R     D YT   VL AC +L     G  V 
Sbjct: 12  NAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQ 71

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM---------------------- 196
                 GF+ +V V  +L+ ++A+C  L  A  +F  M                      
Sbjct: 72  RKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYCGSLKD 131

Query: 197 -----FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
                    + D+VSWN ++AAY   G  +    LF RM   +    D  +  + L ACA
Sbjct: 132 SKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMC-TLGHTPDIYTFSSILGACA 190

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
           S      G+   +   A+  F+R    D    N +++ Y+R GS E A   F  + ++ +
Sbjct: 191 SPKRLEDGRMLHVRITARG-FDR----DFAMQNNLISMYTRCGSLESARRYFYSIEKKEL 245

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
                 W+ ++A YAQ   G +AL +++ M   G  P+  T  S++  CAS+GAL  GK 
Sbjct: 246 G----AWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKF 301

Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
            H        S       D+++  AL++MYAKC S+  A+  FD I+  N+DV +W+ MI
Sbjct: 302 IH------ECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS--NKDVVSWSAMI 353

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI-----HAY 486
            + +Q+G A +AL L   M  Q   +  N  T S  L AC+    L  G          +
Sbjct: 354 AASAQHGHAEEALELSHLMNLQG--IAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDF 411

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHG 542
            +    E  + F     ID+  R+G +  A  V   +  + + V+  +L+ G  +HG
Sbjct: 412 GIERDEENTVGF-----IDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 463



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 147/312 (47%), Gaps = 37/312 (11%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           +  + +I AY      S +L L   +      V  WNA+I          +AF LF +M 
Sbjct: 116 ISVTAMIGAYCGSLKDSKSLFLTMDVK----DVVSWNAMIAAYTLYGHDKDAFSLFHRMC 171

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
             G  PD YTF  +L AC        G  +H  I + GFD +  + N L++MY RC +L 
Sbjct: 172 TLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLE 231

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLV 244
            AR+ F  + +    ++ +WNT++AAYAQ    +  L L+  M     ++G   D  +  
Sbjct: 232 SARRYFYSIEKK---ELGAWNTMLAAYAQFDKGKDALFLYKNML----LEGFTPDRFTFS 284

Query: 245 NALSACASLGTWSRGK-------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
           + + +CASLG    GK        CG        FE    KDV+   A+V  Y++ GS  
Sbjct: 285 SVVDSCASLGALREGKFIHECSTSCG--------FE----KDVILGTALVNMYAKCGSLA 332

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           DA   F  +  +    +VV+WSA+IA  AQ GH  EAL++   M   G+  N VT  S+L
Sbjct: 333 DAKKSFDGISNK----DVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVL 388

Query: 358 SGCASVGALLLG 369
             C+  G L  G
Sbjct: 389 HACSHGGRLYEG 400



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 60/381 (15%)

Query: 27  KLFSVTTTPCIKITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHN 81
           ++ ++  TP I   S +L  C   K L    ++H +I  +         ++LI+ Y    
Sbjct: 169 RMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCG 228

Query: 82  APSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV 141
           +   A      I         WN ++    +     +A  L+  M+  G+ PD +TF  V
Sbjct: 229 SLESARRYFYSIEKKELGA--WNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSV 286

Query: 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI 201
           + +C  L + R G  +H    S GF+ +V +  AL+ MYA+C +L+ A++ FD +     
Sbjct: 287 VDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNK-- 344

Query: 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261
            D+VSW+ ++AA AQ G AE  L L   M      Q + V+  + L AC+  G       
Sbjct: 345 -DVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNE-VTASSVLHACSHGGRL----- 397

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
                                       Y  I  F      F   R E    N V +  +
Sbjct: 398 ----------------------------YEGIDYFMGLSQDFGIERDEE---NTVGFIDL 426

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           +    + G   EA  V   M F   + + V LV+LL GC   G +  GK    +T KR++
Sbjct: 427 L---GRAGWLKEAEHVLHTMPF---KVSFVALVTLLGGCKVHGDVRRGK---AFT-KRIV 476

Query: 382 SVDGSHPDDLMVINALIDMYA 402
           +++  +P   +++N   +MYA
Sbjct: 477 ALEPENPGSYVLLN---NMYA 494


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/595 (37%), Positives = 352/595 (59%), Gaps = 21/595 (3%)

Query: 241 VSLVNA-LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299
           VS V+  L  CA      +GK C     A+ +   +K  D+++ N ++  YS+ GS + A
Sbjct: 64  VSFVHEILKLCAKRKLLLQGKAC----HAQILLMGLKT-DLLTSNILINMYSKCGSVDFA 118

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
             +F +M   ++    V+W+ +I    Q G  +EALD+  QMQ  G   +  T+ S+L  
Sbjct: 119 RQVFDEMPSRSL----VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCA 174

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA+  AL   +  H + IK  + ++      + V  AL+D+YAKC  +  A  +F+++  
Sbjct: 175 CAAKCALSECQLLHAFAIKAAMDLN------VFVATALLDVYAKCGLMKDAVCVFESMP- 227

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
            +R V TW+ M   Y QN     ALALF + ++    +K + F +S  + ACA LAA+  
Sbjct: 228 -DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG--LKHDQFLMSSVICACAGLAAMIE 284

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           G+Q++A + ++ +   I FVA+ LIDMY++ G I+ +  VF ++++RNVV W ++++G  
Sbjct: 285 GKQMNALLSKSGFCSNI-FVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLS 343

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA 599
            H    +    F++M++ GL+P+ VTF+ +L AC H G+V +G KYFD M+KE  ++   
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNV 403

Query: 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659
            HY+C+VD L RA ++ EA +LI  +P   +  +W +LL  CR H N+EL E+AA +L +
Sbjct: 404 FHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFD 463

Query: 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDR 719
           +E    G+Y LLSN+YA  G+W +VA++R L+K + VKK  G SW++ K+    F VG+R
Sbjct: 464 IEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGER 523

Query: 720 THPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTT 779
            HP+  +IY  L  ++  ++ +GY  +T   LH V +  K +LL  HSEKLA   G+L  
Sbjct: 524 NHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFL 583

Query: 780 APGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            P  PIRI KNLRICGDCHS +   S     ++I+RD+NRFHHFK G C+C  +W
Sbjct: 584 PPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 192/434 (44%), Gaps = 86/434 (19%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +LK C +      G + HA I   G  +++   N L+ MY++C ++ +ARQ+FDEM  P 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM--PS 127

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV-----SLVNALSACASLGT 255
              +VSWNT++ +  Q+G+    L L  +M      Q +G      ++ + L ACA+   
Sbjct: 128 R-SLVSWNTMIGSLTQNGEENEALDLLLQM------QREGTPFSEFTISSVLCACAAKCA 180

Query: 256 WSRGK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTG 289
            S  +                          +CG+M++A  VFE M  + VV+W++M  G
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAG 240

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
           Y +   +E A ALF+K            W                          GL+ +
Sbjct: 241 YVQNEMYEQALALFRK-----------AWET------------------------GLKHD 265

Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV 409
              + S++  CA + A++ GK+     +  +LS  G    ++ V ++LIDMYAKC  ++ 
Sbjct: 266 QFLMSSVICACAGLAAMIEGKQ-----MNALLSKSG-FCSNIFVASSLIDMYAKCGGIEE 319

Query: 410 ARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469
           +  +F  +  + R+V  W  MI   S++  + + + LF +M Q    + PN  T    L 
Sbjct: 320 SYKVFRDV--EKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG--LSPNDVTFVSVLS 375

Query: 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV 529
           AC  +  +R G++    + +  +     F  +C++D  SR+G I  A  +   L      
Sbjct: 376 ACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASA 435

Query: 530 S-WTSLMTGYGMHG 542
           S W SL+     HG
Sbjct: 436 SMWGSLLASCRTHG 449



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 50/346 (14%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNL-THVPPSH-LIAAYVSHNAPSPALSLLQRISPSP 97
           +L+ C   K L Q    H QI++  L T +  S+ LI  Y    +   A  +   + PS 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM-PSR 128

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS- 156
            S+  WN +I    +    + A  L LQM R G    E+T   VL AC    +++C  S 
Sbjct: 129 -SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCAC----AAKCALSE 183

Query: 157 ---VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
              +HA    +  D NVFV  AL+ +YA+C  +  A  +F+ M       +V+W+++ A 
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRS---VVTWSSMAAG 240

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------ 261
           Y Q+   E  L LF R   +  ++ D   + + + ACA L     GKQ            
Sbjct: 241 YVQNEMYEQALALF-RKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCS 299

Query: 262 --------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                         CG +EE+ KVF  ++ ++VV WNAM++G SR     +   LF+KM+
Sbjct: 300 NIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ 359

Query: 308 QENVKLNVVTWSAVIAGYAQRG---HGHEALDVFRQMQFCGLEPNV 350
           Q  +  N VT+ +V++     G    G +  D+  +     L PNV
Sbjct: 360 QMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHH--LAPNV 403



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 125/256 (48%), Gaps = 23/256 (8%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           SV  W+++    V+  + + A  LF +    G   D++    V+ AC  L +   G  ++
Sbjct: 230 SVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMN 289

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A++  SGF SN+FV ++L+ MYA+C  +  + ++F ++ +    ++V WN +++  ++  
Sbjct: 290 ALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKR---NVVLWNAMISGLSRHA 346

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            +   ++LF +M   + +  + V+ V+ LSAC  +G   +G         +K F+ M  +
Sbjct: 347 RSLEVMILFEKMQ-QMGLSPNDVTFVSVLSACGHMGLVRKG---------QKYFDLMTKE 396

Query: 279 -----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                +V  ++ MV   SR G   +A+ L  K+       +   W +++A  + R HG+ 
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL---PFNASASMWGSLLA--SCRTHGNL 451

Query: 334 ALDVFRQMQFCGLEPN 349
            L      +   +EP+
Sbjct: 452 ELAEVAAKKLFDIEPH 467


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 347/581 (59%), Gaps = 20/581 (3%)

Query: 260 KQCGMMEEAKKVFER-MKV----KDVVSWNAMVT-GYSRIGSFEDAFALFKKMRQENVKL 313
           K+C  MEE K+   R +K+        + N + T   S  GS + A ++F++M +    L
Sbjct: 39  KKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDE----L 94

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
               ++ ++ G+ +  +  EAL  +++M   G++P+  T  +LL  CA + A+  G + H
Sbjct: 95  GSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVH 154

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
            + +K  L       +D+ V N+LI MY KC  + V   +F+ +    R VA+W+ +I +
Sbjct: 155 AHILKLGLE------NDVFVQNSLISMYGKCGEIGVCCAVFEQM--NERSVASWSALITA 206

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           ++  G  +D L L   M  +       +  +S  L AC  L AL  GR +H ++LRN   
Sbjct: 207 HASLGMWSDCLRLLGDMSNEGYWRAEESILVS-VLSACTHLGALDLGRSVHGFLLRN-VS 264

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
            L   V   LI+MY + G +     +F  + ++N +S++ +++G  MHG G +    F +
Sbjct: 265 GLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTE 324

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M ++GL PD + ++ +L ACSH+G+V +GL+ F+ M  E GI    +HY C+VDL+GRA 
Sbjct: 325 MLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAG 384

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
           ++DEA+ELI+ MPMEP  ++W +LL+  ++H N++ GE+AA +L +L+S+K   Y +LSN
Sbjct: 385 KIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSN 444

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           +YA A RW+DVA+ R+ M   G+ +RPG S V+ K     F   D  HPQS+ +YE+L  
Sbjct: 445 MYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQ 504

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           +  ++K  GY P T+  L DVD+EEK   L  HS+KLA+AY ++ T+ G+PIRI +NLR+
Sbjct: 505 MEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRM 564

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCH+    IS+I + EI +RD +RFHHFK+G+C+C+ YW
Sbjct: 565 CNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 204/441 (46%), Gaps = 28/441 (6%)

Query: 29  FSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIA--AYVSHNAPS 84
           F +    C+     LL++C ++ +    H +I+   L       S+L+A  A     +  
Sbjct: 27  FKLGEKECVS----LLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMD 82

Query: 85  PALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144
            A S+ +++       F +N ++R  V+    + A   + +M  RG  PD +T+P +LKA
Sbjct: 83  YACSIFRQMDE--LGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKA 140

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           C  LP+   G  VHA I   G +++VFV N+L++MY +C  +     +F++M +     +
Sbjct: 141 CARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERS---V 197

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
            SW+ ++ A+A  G     L L   M+ +   + +   LV+ LSAC  LG    G+    
Sbjct: 198 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                 +   +   +V+   +++  Y + GS      LF+KM     K N +++S +I+G
Sbjct: 258 F-----LLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKM----AKKNKLSYSVMISG 308

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            A  G+G E L +F +M   GLEP+ +  V +L+ C+  G  L+ +   C+   R+    
Sbjct: 309 LAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAG--LVQEGLQCFN--RMKLEH 364

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444
           G  P  +     ++D+  +   +D A  +  ++  +  DV   +++  S   N      +
Sbjct: 365 GIEP-TIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEI 423

Query: 445 ALFPQMFQQDKLVKPNAFTLS 465
           A   Q+F+ D     +   LS
Sbjct: 424 AA-KQLFKLDSQKASDYVVLS 443


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 327/579 (56%), Gaps = 45/579 (7%)

Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLE 347
           Y+  G  + A AL ++          V +++ I  ++ RG    AL +  +M     GL 
Sbjct: 66  YAASGRLDLAVALLRRTPDPTA----VFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLL 121

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS------------------------- 382
           P   TL + L  C   G L +G+  H Y +K  LS                         
Sbjct: 122 PTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARAL 178

Query: 383 VDGSHPDDLMV-INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
            DG  PD  +V + A++  YAK   +D AR +FDA+  K  D+  W  M+  Y+Q+G  +
Sbjct: 179 FDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRK--DLVCWNAMMDGYTQHGRPS 236

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL---RNQYEMLIPF 498
           +AL LF QM +    V+P+  ++  AL A A+L     GR +H++V    R     L   
Sbjct: 237 EALRLFRQMLRSG--VEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNAR 294

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
           V   L+DMY + G ++ A  VF +L     R+VV+W +++ GY MHG   +A  AF Q+R
Sbjct: 295 VGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLR 354

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
            +GL P  +TF+ +L ACSHSG+VD+G   F +M +E+GI  + EHY C+VDLLGRA R+
Sbjct: 355 AQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRV 414

Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
           +EA +L++ M  +P   +W +LL  CR+H N+ LG+  A+ L+       G+Y LLSN+Y
Sbjct: 415 EEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMY 474

Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
           A AG+W++V R+RS+M+ +GV+K PGCS V+       F  GDR+HP+S +IY  L  + 
Sbjct: 475 AAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVN 534

Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
              +A G+VP T   LHD+DD  K   L  HSEKLALA+G+++T P T I+I KNLR C 
Sbjct: 535 SIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACA 594

Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           DCH+ +  +S     +I+ RD NRFHHF +GSC+C  YW
Sbjct: 595 DCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 138/549 (25%), Positives = 230/549 (41%), Gaps = 118/549 (21%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LL  C S ++   IH   +  ++         L  AY +      A++LL+R +P P +V
Sbjct: 30  LLAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRR-TPDPTAV 88

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMM--RRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           F+ +A+   + R  L   A  L  +M+  R G  P  +T    L ACG L     G ++H
Sbjct: 89  FYTSAIHAHSSR-GLHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLA---VGRALH 144

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                       +V  AL+ MYAR    + AR LFD M +P    +VS   +++ YA+  
Sbjct: 145 GYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGM-RPDP-HVVSVTAMLSCYAK-- 200

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                                                       G +++A+ +F+ +  K
Sbjct: 201 -------------------------------------------MGQLDDARGLFDALPRK 217

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+V WNAM+ GY++ G   +A  LF++M +                              
Sbjct: 218 DLVCWNAMMDGYTQHGRPSEALRLFRQMLRS----------------------------- 248

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD----DLMVI 394
                 G+EP+ V++V  LS  A +G    G+  H +        +G        +  V 
Sbjct: 249 ------GVEPDEVSVVLALSAVAQLGTAESGRWLHSFV------ANGGRRARVRLNARVG 296

Query: 395 NALIDMYAKCKSVDVARVMF-DAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            AL+DMY KC S++ A  +F D     +RDV  W  MI  Y+ +G + +AL  F Q+  Q
Sbjct: 297 TALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQ 356

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSG 511
              + P   T    L AC+    +  GR + A  +  +Y  ++P V +  C++D+  R+G
Sbjct: 357 G--LWPTDITFIGVLNACSHSGLVDEGRALFA-AMEEEYG-IVPKVEHYGCMVDLLGRAG 412

Query: 512 DIDTARVVFDNLKQR-NVVSWTSLMTGYGMH---GLGDKAHWAFDQMRKEGLAPDGVTFL 567
            ++ A  +  ++K + +   W SL+    +H    LG +     D +   GLA  G T++
Sbjct: 413 RVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQR---VADYLVGNGLANSG-TYV 468

Query: 568 VL--LYACS 574
           +L  +YA +
Sbjct: 469 LLSNMYAAA 477


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/704 (34%), Positives = 391/704 (55%), Gaps = 32/704 (4%)

Query: 43  LLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           LLR C   KSL Q  LIHQ+++   L +      +LI  Y+S +    A  +   +  +P
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME-NP 67

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSS 156
             +  WN L+    +  +   A  LF +++   +  PD YT+P VLKACG L     G  
Sbjct: 68  CEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKM 127

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +H  +  +G   ++ V ++L+ MYA+C+    A  LF+EM +    D+  WNT+++ Y Q
Sbjct: 128 IHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEK---DVACWNTVISCYYQ 184

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           SG+ +  L  F  M      + + V++  A+S+CA L   +RG     ME  +++     
Sbjct: 185 SGNFKEALEYFGLMR-RFGFEPNSVTITTAISSCARLLDLNRG-----MEIHEELINSGF 238

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           + D    +A+V  Y + G  E A  +F++M ++ V    V W+++I+GY  +G     + 
Sbjct: 239 LLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTV----VAWNSMISGYGLKGDSISCIQ 294

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           +F++M   G++P + TL SL+  C+    LL GK  H YTI+  +        D+ + ++
Sbjct: 295 LFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQ------SDVFINSS 348

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+D+Y KC  V++A  +F  I PK++ V +W VMI  Y   G   +AL LF +M  +   
Sbjct: 349 LMDLYFKCGKVELAENIFKLI-PKSK-VVSWNVMISGYVAEGKLFEALGLFSEM--RKSY 404

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V+P+A T +  L AC++LAAL  G +IH  ++  + +     V   L+DMY++ G +D A
Sbjct: 405 VEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDN-NEVVMGALLDMYAKCGAVDEA 463

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             VF  L +R++VSWTS++T YG HG    A   F +M +  + PD VTFL +L AC H+
Sbjct: 464 FSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHA 523

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWV 635
           G+VD+G  YF+ M   +GI  R EHY+C++DLLGRA RL EA E+++  P +     +  
Sbjct: 524 GLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLS 583

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
            L + CR+H N++LG   A  L++ + +   +Y LLSN+YA+A +W +V  +RS MK  G
Sbjct: 584 TLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELG 643

Query: 696 VKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
           +KK PGCSW++  +    FFV D +H   + +++ L+ L   ++
Sbjct: 644 LKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHME 687


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/526 (41%), Positives = 314/526 (59%), Gaps = 12/526 (2%)

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
           E  K +  TWS+VI+ +AQ      AL  FR+M   G+ P+     S    C  +    +
Sbjct: 85  ETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDV 144

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK  HC      L+V   +  D+ V ++L+DMYAKC  +  AR +FD +  +N  V +W+
Sbjct: 145 GKSVHC------LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERN--VVSWS 196

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            MI  Y+Q     +AL LF Q   +D  V  N FT S  +  C+    L  G+ IH   L
Sbjct: 197 GMIYGYAQLDDGVEALTLFKQALIED--VDVNDFTFSSVIRVCSSSTFLELGKLIHGLCL 254

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
           +  ++    FV + LI +YS+ G I+ A  VFD +  RN+  W S++     H    +  
Sbjct: 255 KMSFDS-SSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVF 313

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F++M   G+ P+ + FL +LYACSH+G+V++G +YF S+ +++GI    EHYA +VDL
Sbjct: 314 GLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDL 372

Query: 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
           LGRA +L EAV +I+ MPM PT  +W ALL GCRIH + E+    A+R+LE++S   G +
Sbjct: 373 LGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLH 432

Query: 669 TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
            LLSN YA AGR+++ AR+R +++  GVKK  G SWV+      TF  GDR+H +  +IY
Sbjct: 433 VLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492

Query: 729 EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
           E L  L + ++  GYV  TSF L  VD EEK + +  HSE+LA+A+G++T  PG PIR+ 
Sbjct: 493 EKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVM 552

Query: 789 KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           KNLR+CGDCH+AI F+S      +I+RD+NRFH F++G C+C  YW
Sbjct: 553 KNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 172/368 (46%), Gaps = 39/368 (10%)

Query: 13  SKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLR--QCKSLTQVYLIHQQIIVQNLTHVP- 69
           S+ PL  N    N +          +I +LLL   + +SL Q   +H  I+   L  +P 
Sbjct: 12  SQNPLNQNSFEQNYR----------QICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPL 61

Query: 70  -PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR 128
              +LI  Y     P  +L +    +P   S   W+++I    +   P  A + F +M+ 
Sbjct: 62  VSHNLINLYSKTQLPLFSLQVFDE-TPKKSST-TWSSVISAFAQNEAPLLALQFFRRMLN 119

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
            G  PD++ +P   KACG L  S  G SVH +   +G+  +VFV ++L+ MYA+C  +  
Sbjct: 120 DGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGD 179

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR-MTGDVKVQGDGVSLVNAL 247
           AR LFDEM +    ++VSW+ ++  YAQ  D    L LF + +  DV V  +  +  + +
Sbjct: 180 ARHLFDEMPER---NVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV--NDFTFSSVI 234

Query: 248 SACASLGTWSRGK----QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
             C+S      GK     C  M      F           +A+++ YS+ G  E A+ +F
Sbjct: 235 RVCSSSTFLELGKLIHGLCLKMSFDSSSF---------VGSALISLYSKCGVIEGAYQVF 285

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
            ++   N+ L    W++++   AQ  H      +F +M   G++PN +  +S+L  C+  
Sbjct: 286 DEIPTRNLGL----WNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHA 341

Query: 364 GALLLGKE 371
           G +  G+E
Sbjct: 342 GLVEKGRE 349



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 4/193 (2%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L++  R  +LR G Q+HA++L+   +  IP V++ LI++YS++     +  VFD   +++
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQT-IPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             +W+S+++ +  +     A   F +M  +G+ PD   +     AC      D G K   
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVG-KSVH 149

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG-CRIHAN 646
            ++ + G        + +VD+  +   + +A  L + MP E   + W  ++ G  ++   
Sbjct: 150 CLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMIYGYAQLDDG 208

Query: 647 VELGELAANRLLE 659
           VE   L    L+E
Sbjct: 209 VEALTLFKQALIE 221


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/673 (35%), Positives = 373/673 (55%), Gaps = 32/673 (4%)

Query: 169  NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
            N+   N L+ MY +C     A ++FD M +    ++VSW+ +++ +  +GD +G L LF+
Sbjct: 411  NLITSNYLIDMYCKCREPLMAYKVFDSMPER---NVVSWSALMSGHVLNGDLKGSLSLFS 467

Query: 229  RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMV 287
             M G   +  +  +    L AC  L    +G Q  G     K  FE M    V   N++V
Sbjct: 468  EM-GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC--LKIGFEMM----VEVGNSLV 520

Query: 288  TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
              YS+ G   +A  +F+++    V  ++++W+A+IAG+   G+G +ALD F  MQ   ++
Sbjct: 521  DMYSKCGRINEAEKVFRRI----VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIK 576

Query: 348  --PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDLMVINALIDMYAKC 404
              P+  TL SLL  C+S G +  GK+ H + ++      G H P    +  +L+D+Y KC
Sbjct: 577  ERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR-----SGFHCPSSATITGSLVDLYVKC 631

Query: 405  KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
              +  AR  FD I  K + + +W+ +I  Y+Q G   +A+ LF ++  Q+   + ++F L
Sbjct: 632  GYLFSARKAFDQI--KEKTMISWSSLILGYAQEGEFVEAMGLFKRL--QELNSQIDSFAL 687

Query: 465  SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
            S  +   A  A LR G+Q+ A  ++     L   V N ++DMY + G +D A   F  ++
Sbjct: 688  SSIIGVFADFALLRQGKQMQALAVKLP-SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQ 746

Query: 525  QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
             ++V+SWT ++TGYG HGLG K+   F +M +  + PD V +L +L ACSHSGM+ +G +
Sbjct: 747  LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEE 806

Query: 585  YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
             F  + +  GI  R EHYAC+VDLLGRA RL EA  LI+ MP++P   IW  LL+ CR+H
Sbjct: 807  LFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVH 866

Query: 645  ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
             ++ELG+     LL ++++   +Y ++SN+Y  AG W +    R L    G+KK  G SW
Sbjct: 867  GDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSW 926

Query: 705  VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK-AMGYVPQTSFALHDVDDEEKGDLL 763
            V+ +     F  G+ +HP +  I E L    +R++  +GYV      LHD+DDE K + L
Sbjct: 927  VEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENL 986

Query: 764  FEHSEKLALAYGILT---TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
              HSEKLA+   + T      G  IR+ KNLR+C DCH  I  +S I     ++RD+ RF
Sbjct: 987  RAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRF 1046

Query: 821  HHFKEGSCTCKGY 833
            H F++G C+C  Y
Sbjct: 1047 HSFEDGCCSCGDY 1059



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 234/510 (45%), Gaps = 84/510 (16%)

Query: 65  LTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           L  +  ++LI  Y     P  A  +   +     +V  W+AL+   V       +  LF 
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPER--NVVSWSALMSGHVLNGDLKGSLSLFS 467

Query: 125 QMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184
           +M R+G +P+E+TF   LKACG L +   G  +H      GF+  V V N+L+ MY++C 
Sbjct: 468 EMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 527

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSL 243
            ++ A ++F  +       ++SWN ++A +  +G     L  F  M   ++K + D  +L
Sbjct: 528 RINEAEKVFRRIVDRS---LISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTL 584

Query: 244 VNALSACASLGTWSRGKQ----------------------------CGMMEEAKKVFERM 275
            + L AC+S G    GKQ                            CG +  A+K F+++
Sbjct: 585 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI 644

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           K K ++SW++++ GY++ G F +A  LFK++++ N +++    S++I  +A         
Sbjct: 645 KEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFAD-------F 697

Query: 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
            + RQ                            GK+     +K    ++ S      V+N
Sbjct: 698 ALLRQ----------------------------GKQMQALAVKLPSGLETS------VLN 723

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           +++DMY KC  VD A   F  +  K  DV +WTV+I  Y ++G    ++ +F +M + + 
Sbjct: 724 SVVDMYLKCGLVDEAEKCFAEMQLK--DVISWTVVITGYGKHGLGKKSVRIFYEMLRHN- 780

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDI 513
            ++P+       L AC+    ++ G ++ + +L      + P V +  C++D+  R+G +
Sbjct: 781 -IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETH--GIKPRVEHYACVVDLLGRAGRL 837

Query: 514 DTARVVFDNLKQR-NVVSWTSLMTGYGMHG 542
             A+ + D +  + NV  W +L++   +HG
Sbjct: 838 KEAKHLIDTMPIKPNVGIWQTLLSLCRVHG 867


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/701 (34%), Positives = 381/701 (54%), Gaps = 30/701 (4%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + A  LF ++   G   +++    +LK    + ++     VH+     G D N FV + L
Sbjct: 144 EAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGL 203

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
           +  Y+ C  +S A  +F+ + +    D V W  +V+ Y+++   E    +F++M    +V
Sbjct: 204 IDAYSLCSLVSDAEHVFNGIVRK---DAVVWTAMVSCYSENDCPENAFRVFSKM----RV 256

Query: 237 QG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
            G   +  +L + L A   L +   GK  G+   A K     +        A++  Y++ 
Sbjct: 257 SGCKPNPFALTSVLKAAVCLPSVVLGK--GIHGCAIKTLNDTEPH---VGGALLDMYAKC 311

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           G  +DA   F+ +  ++V    +  S +I+ YAQ     +A ++F ++    + PN  +L
Sbjct: 312 GDIKDARLAFEMIPYDDV----ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 367

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L  C ++  L  GK+ H + IK        H  DL V NAL+D YAKC  +D +  +
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKI------GHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F ++   N    +W  ++  +SQ+G   +AL++F +M  Q   +     T S  L ACA 
Sbjct: 422 FSSLRDANE--VSWNTIVVGFSQSGLGEEALSVFCEM--QAAQMPCTQVTYSSVLRACAS 477

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
            A++R   QIH  + ++ +      + N LID Y++ G I  A  VF +L +R+++SW +
Sbjct: 478 TASIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNA 536

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++GY +HG    A   FD+M K  +  + +TF+ LL  CS +G+V+ GL  FDSM  + 
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDH 596

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    EHY CIV LLGRA RL++A++ I  +P  P+ ++W ALL+ C IH NV LG  +
Sbjct: 597 GIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS 656

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A ++LE+E + + +Y LLSN+YA AG    VA +R  M++ GV+K PG SWV+ K     
Sbjct: 657 AEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHA 716

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F VG   HP  + I  +L  L  +    GY+P  +  LHDVD E+K  +L+ HSE+LALA
Sbjct: 717 FSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALA 776

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           YG++ T PG PIRI KNLR C DCH+A T IS I+  EII+
Sbjct: 777 YGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIV 817



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 248/543 (45%), Gaps = 86/543 (15%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS--NVFVCNALMAMYARCDTLSYARQ 191
           D +     L+ C     +R G +VH  +   G     ++F  N L+ MY +   L+ AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD--------------VKVQ 237
           LFD M +    ++VS+ T+V A+AQ GD E    LF R+  +              + + 
Sbjct: 118 LFDRMPER---NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 238 GDGVSLVNALSACASLGTWSRGKQ---------------CGMMEEAKKVFERMKVKDVVS 282
            D   L   + +CA    W  G                 C ++ +A+ VF  +  KD V 
Sbjct: 175 MDAAGLAGGVHSCA----WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVV 230

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           W AMV+ YS     E+AF +F KMR                                   
Sbjct: 231 WTAMVSCYSENDCPENAFRVFSKMR----------------------------------- 255

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
             G +PN   L S+L     + +++LGK  H   IK   +++ + P    V  AL+DMYA
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIK---TLNDTEPH---VGGALLDMYA 309

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  AR+ F+ I P + DV   + MI  Y+Q+     A  LF ++ +   L  PN +
Sbjct: 310 KCGDIKDARLAFEMI-PYD-DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVL--PNEY 365

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           +LS  L AC  +  L FG+QIH + ++  +E  + FV N L+D Y++  D+D++  +F +
Sbjct: 366 SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDL-FVGNALMDFYAKCNDMDSSLKIFSS 424

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L+  N VSW +++ G+   GLG++A   F +M+   +    VT+  +L AC+ +  +   
Sbjct: 425 LRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            +   S+ K    +        ++D   +   + +A+++ + + ME   I W A+++G  
Sbjct: 485 GQIHCSIEKS-TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYA 542

Query: 643 IHA 645
           +H 
Sbjct: 543 LHG 545



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 226/483 (46%), Gaps = 31/483 (6%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A++        P+NAFR+F +M   G  P+ +    VLKA   LPS   G  +H    
Sbjct: 231 WTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAI 290

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +  D+   V  AL+ MYA+C  +  AR  F EM      D++  + +++ YAQS   E 
Sbjct: 291 KTLNDTEPHVGGALLDMYAKCGDIKDARLAF-EMIPYD--DVILLSFMISRYAQSNQNEQ 347

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF R+     V  +  SL + L AC ++     GKQ  +   A K+       D+  
Sbjct: 348 AFELFLRLMRS-SVLPNEYSLSSVLQACTNMVQLDFGKQ--IHNHAIKIGHE---SDLFV 401

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            NA++  Y++    + +  +F  +R      N V+W+ ++ G++Q G G EAL VF +MQ
Sbjct: 402 GNALMDFYAKCNDMDSSLKIFSSLRDA----NEVSWNTIVVGFSQSGLGEEALSVFCEMQ 457

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              +    VT  S+L  CAS  ++    + HC   K   +      +D ++ N+LID YA
Sbjct: 458 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN------NDTVIGNSLIDTYA 511

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +  A  +F  +    RD+ +W  +I  Y+ +G A DAL LF +M + +  V+ N  
Sbjct: 512 KCGYIRDALKVFQHLM--ERDIISWNAIISGYALHGQAADALELFDRMNKSN--VESNDI 567

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA-RVV 519
           T    L  C+    +  G  +   +  +    + P + +  C++ +  R+G ++ A + +
Sbjct: 568 TFVALLSVCSSTGLVNHGLSLFDSMRIDHG--IKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM 578
            D     + + W +L++   +H   + A   F   +   + P D  T+++L    + +G 
Sbjct: 626 GDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGS 683

Query: 579 VDQ 581
           +DQ
Sbjct: 684 LDQ 686



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 181/388 (46%), Gaps = 24/388 (6%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D+   N ++  Y ++G    A  LF +M + N+    V++  ++  +AQRG    A  +F
Sbjct: 95  DLFCANVLLNMYGKLGPLASARRLFDRMPERNM----VSFVTLVQAHAQRGDFEAAAALF 150

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           R++++ G E N   L ++L    ++ A  L    H    K        H  +  V + LI
Sbjct: 151 RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKL------GHDHNAFVGSGLI 204

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D Y+ C  V  A  +F+ I  K  D   WT M+  YS+N    +A  +F +M  +    K
Sbjct: 205 DAYSLCSLVSDAEHVFNGIVRK--DAVVWTAMVSCYSENDCPENAFRVFSKM--RVSGCK 260

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLR--NQYEMLIPFVANCLIDMYSRSGDIDTA 516
           PN F L+  L A   L ++  G+ IH   ++  N  E   P V   L+DMY++ GDI  A
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE---PHVGGALLDMYAKCGDIKDA 317

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
           R+ F+ +   +V+  + +++ Y      ++A   F ++ +  + P+  +   +L AC++ 
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
             +D G K   + + + G  +       ++D   + N +D ++++   +  +   + W  
Sbjct: 378 VQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNT 435

Query: 637 LLNGCRIHANVELGELAANRLLELESEK 664
           ++ G    +   LGE A +   E+++ +
Sbjct: 436 IVVG---FSQSGLGEEALSVFCEMQAAQ 460



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCA--LMACARLAALRFGRQIHAYVLRNQ-YEMLIPFV 499
           +LA+ P +        P   + +CA  L  C      R GR +H +V+R      L  F 
Sbjct: 47  SLAILPSV--------PGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFC 98

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           AN L++MY + G + +AR +FD + +RN+VS+ +L+  +   G  + A   F ++R EG
Sbjct: 99  ANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEG 157


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 340/573 (59%), Gaps = 17/573 (2%)

Query: 265 MEEAKKVFER-MKVKDVVSWNAMVT--GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           MEE K+V  + +K ++    + +V     S  GS + A ++F+++ Q         ++ +
Sbjct: 1   MEEFKQVHAQVLKWENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGT----FEFNTM 56

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           I GY    +   AL ++ +M   G+E +  T  +L   CAS+ ++  G + H Y  KR L
Sbjct: 57  IRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGL 116

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
                   DL V N+LI+MY KC  ++++  +F+ +    RDVA+W+ +I +++  G  +
Sbjct: 117 E------GDLFVQNSLINMYGKCGKIELSCSVFEHM--DRRDVASWSAIIAAHASLGMWS 168

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           + L++F +M ++    +P    L   L AC  L AL  GR  H  +LRN  EM +  V  
Sbjct: 169 ECLSVFGEMSREGS-CRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNV-IVQT 226

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            LIDMY + G I+    +F  + ++N +S++ ++TG  MHG G +A   F  M +EGL P
Sbjct: 227 SLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKP 286

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           D V +L +L AC+H+G+VD+GL+ F+ M  E GI    +HY CIV L+GRA  L++A+E 
Sbjct: 287 DDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEH 346

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           I  MP++P  ++W  LL+ C+ H N+E+GE+AA  L EL S   G Y +LSN+YA A RW
Sbjct: 347 IRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRW 406

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
           +DVA+IR+ M   G  + PG S VQ +     F   D +HPQ + +YE++  +  ++K  
Sbjct: 407 EDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFE 466

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GY P TS  L DVD+EEK   L  HS+KLA+A+ ++ T+ G PIRI +NLR+C DCH+  
Sbjct: 467 GYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYT 526

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             IS+I   EI +RD NRFHHFK+G+C+C+ YW
Sbjct: 527 KLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 148/291 (50%), Gaps = 16/291 (5%)

Query: 86  ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
           A S+ ++I       F +N +IR  V +   +NA  L+ +M+ RG   D +T+P + KAC
Sbjct: 38  ACSIFRQIDQP--GTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKAC 95

Query: 146 GELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIV 205
             L S   G  +H  I   G + ++FV N+L+ MY +C  +  +  +F+ M +    D+ 
Sbjct: 96  ASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRR---DVA 152

Query: 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265
           SW+ I+AA+A  G     L +F  M+ +   + +   LV+ LSAC  LG    G+ C  +
Sbjct: 153 SWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGR-CTHV 211

Query: 266 EEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325
              + + E     +V+   +++  Y + G  E   +LF++M    VK N +++S +I G 
Sbjct: 212 TLLRNIRE----MNVIVQTSLIDMYVKCGCIEKGLSLFQRM----VKKNQLSYSVMITGL 263

Query: 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           A  G G EAL VF  M   GL+P+ V  + +LS C   G  L+ +   C+ 
Sbjct: 264 AMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAG--LVDEGLQCFN 312


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/675 (35%), Positives = 370/675 (54%), Gaps = 25/675 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++   ++      A RLF  M   G  P+  T    L  C        G  +H++  
Sbjct: 210 WNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAV 269

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +  V V N L++MYA+C  L  A +LF+ + +    D+V+WN +++   Q+G  + 
Sbjct: 270 KCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRD---DLVTWNGMISGCVQNGLLDE 326

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L LF  M      + D V+LV+ L A   L    +GK     E    +       D   
Sbjct: 327 ALGLFCDMLRS-GARPDSVTLVSLLPALTDLNGLKQGK-----EVHGYIIRNCVHMDAFL 380

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            +A+V  Y +      A  L+   R     ++VV  S VI+GY   G   +AL +FR + 
Sbjct: 381 VSALVDIYFKCRDVRTARNLYDAARA----IDVVIGSTVISGYVLNGMSEKALQMFRYLL 436

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              ++PN VT+ S+L  CAS+ AL LG+E H Y ++       ++     V +AL+DMYA
Sbjct: 437 EQCIKPNAVTVASVLPACASISALPLGQEIHGYVLR------NAYEGKCYVESALMDMYA 490

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +D++  +F  ++ K  D  TW  MI S+SQNG   +AL LF QM  +   +K N  
Sbjct: 491 KCGRLDLSHYIFSKMSLK--DEVTWNSMISSFSQNGEPQEALDLFRQMCMEG--IKYNNV 546

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T+S AL ACA L A+ +G++IH  +++   +  I F  + LIDMY++ G+++ A  VF+ 
Sbjct: 547 TISSALSACASLPAIYYGKEIHGVIIKGPIKADI-FAESALIDMYAKCGNMELALRVFEF 605

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  +N VSW S+++ YG HGL  ++     +M++EG  PD VTFL L+ AC+H+G+V++G
Sbjct: 606 MPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEG 665

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           L+ F  M+KE+ I+ R EH+AC+VDL  R+ RLD+A++ I  MP +P   IW ALL+ CR
Sbjct: 666 LQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACR 725

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H NVEL ++A+  L +L+    G Y L+SNI A AGRW  V+++R LMK   + K PG 
Sbjct: 726 VHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGY 785

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SWV     +  F   D++HP+S+ IY  L  L+Q ++  GYVP+     H +  +    +
Sbjct: 786 SWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELREEGYVPRPDLC-HPMHPDNNTQV 844

Query: 763 LFEHSEKLALAYGIL 777
            F+  ++L    G L
Sbjct: 845 GFKKYKRLFDVLGTL 859



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 193/657 (29%), Positives = 317/657 (48%), Gaps = 58/657 (8%)

Query: 43  LLRQCKSLTQVYL---IHQQIIVQ----NLTHVP-PSHLIAAYVSHNAPSPALSLLQRIS 94
           LLR C S   + L   IH + +V     N  H+   + L+  YV       A+++   + 
Sbjct: 38  LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 95  -PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR--GWHPDEYTFPFVLKACGELPSS 151
             +  S   WN LIR          A   +++M        PD +T P+V+K+C  L + 
Sbjct: 98  RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAV 157

Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
             G  VH    ++G  S+V+V +AL+ MY+    L  AR  FD M      D V WN ++
Sbjct: 158 SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR---DCVLWNVMM 214

Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQ------- 261
             Y ++GD  G + LF  M    +V G   +  +L   LS CA+      G Q       
Sbjct: 215 DGYIKAGDVGGAVRLFRNM----RVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVK 270

Query: 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           CG+ +E            V   N +++ Y++    +DA+ LF+ + ++    ++VTW+ +
Sbjct: 271 CGLEQE------------VAVANTLLSMYAKCRCLDDAWRLFELLPRD----DLVTWNGM 314

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           I+G  Q G   EAL +F  M   G  P+ VTLVSLL     +  L  GKE H Y I+  +
Sbjct: 315 ISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCV 374

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
            +D        +++AL+D+Y KC+ V  AR ++D  A +  DV   + +I  Y  NG + 
Sbjct: 375 HMDA------FLVSALVDIYFKCRDVRTARNLYD--AARAIDVVIGSTVISGYVLNGMSE 426

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
            AL +F  + +Q   +KPNA T++  L ACA ++AL  G++IH YVLRN YE    +V +
Sbjct: 427 KALQMFRYLLEQ--CIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKC-YVES 483

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L+DMY++ G +D +  +F  +  ++ V+W S+++ +  +G   +A   F QM  EG+  
Sbjct: 484 ALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKY 543

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           + VT    L AC+    +  G K    +  +  I A     + ++D+  +   ++ A+ +
Sbjct: 544 NNVTISSALSACASLPAIYYG-KEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRV 602

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            E MP +   + W ++++    H  V+      +R+ E E  K    T L+ I A A
Sbjct: 603 FEFMP-DKNEVSWNSIISAYGAHGLVKESVSFLHRMQE-EGYKPDHVTFLALISACA 657


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/691 (37%), Positives = 379/691 (54%), Gaps = 35/691 (5%)

Query: 146 GELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDI 204
           GEL +   G ++HA +I ++ FD  V   N L+A Y +C  L  ARQ+FD M      + 
Sbjct: 25  GELCT---GKAIHAQMIRAAHFD--VIQHNHLIAFYGKCGRLGLARQMFDAMPSR---NA 76

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           VS N +++ YA +G     L L      D  +  +   L  ALSA A + ++  G+QC  
Sbjct: 77  VSGNLLMSGYASAGRHSDALALLK--AADFSL--NEYVLSTALSAAAHVRSYGMGRQCHG 132

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK-LNVVTWSAVIA 323
                 + E   V      NA++  Y +    EDA  +F     ENV   ++  ++++I 
Sbjct: 133 YAVKSGLQEHPYV-----CNAVLHMYCQCAHVEDAVKVF-----ENVSGFDIFAFNSMIN 182

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G+   G    ++ + R M     + + V+ V++L  CAS   LLLG + H   +KR L  
Sbjct: 183 GFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLE- 241

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
                 ++ V +AL+DMY KC     A   F+ +  KN  V +WT ++ +Y+QN    DA
Sbjct: 242 -----QNVYVGSALVDMYGKCDCARDAHSAFEVLPEKN--VVSWTAVMTAYTQNERFEDA 294

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L LF  +  + + V+PN FT + AL +CA LAAL+ G  + A  ++  +   +  V N L
Sbjct: 295 LQLFLDL--EIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALS-VCNAL 351

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           ++MYS+SG I  A  VF ++  R+VVSW S++ GY  HGL  +A   F  M    + P  
Sbjct: 352 MNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSY 411

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           VTF+ +L AC+  G+VD+GL Y + M KE GI    EHY C+V LL RA RLDEA + I 
Sbjct: 412 VTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFIL 471

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
              +    + W +LL+ C+++ N  LG   A ++L+L+    G+Y LLSN+YA A RW  
Sbjct: 472 SNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDG 531

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           V ++R LM+  GV+K PG SW+Q       F   D+ H    +I   L  L+ +IK +GY
Sbjct: 532 VVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKVIGY 591

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           VP  +  LHDV+ E+K + L  HSEK+ALA+G++ +  G  IRI KNLRIC DCH AI  
Sbjct: 592 VPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRICDDCHVAIKL 651

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS++   +I++RD+ RFH   +G C+C  YW
Sbjct: 652 ISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 214/444 (48%), Gaps = 38/444 (8%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           +EY     L A   + S   G   H     SG   + +VCNA++ MY +C  +  A ++F
Sbjct: 107 NEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVF 166

Query: 194 DEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253
           + +   G  DI ++N+++  +   G+ +G + +   M G+V+ Q D VS V  L  CAS 
Sbjct: 167 ENV--SGF-DIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVE-QWDHVSYVAVLGHCAST 222

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                G Q      A+ +  R++ ++V   +A+V  Y +     DA + F+ + ++N   
Sbjct: 223 KELLLGCQV----HAQALKRRLE-QNVYVGSALVDMYGKCDCARDAHSAFEVLPEKN--- 274

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
            VV+W+AV+  Y Q     +AL +F  ++  G+ PN  T    L+ CA + AL  G    
Sbjct: 275 -VVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALS 333

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
              +K        H   L V NAL++MY+K  S+  A  +F  ++   RDV +W  +I  
Sbjct: 334 ASAMKT------GHWGALSVCNALMNMYSKSGSIHDAWRVF--LSMPWRDVVSWNSVIIG 385

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y+ +G A +A+ +F  M   +  + P+  T    L+ACA+L  +  G      +++   E
Sbjct: 386 YAHHGLAREAMCVFHDMLLAE--IVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMK---E 440

Query: 494 MLIP---FVANCLIDMYSRSGDIDTA-RVVFDNLKQRNVVSWTSLMTG---YGMHGLGDK 546
           M I        C++ +  R+G +D A + +  N    +VV+W SL++    Y  +GLG  
Sbjct: 441 MGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLG-- 498

Query: 547 AHWAFDQMRKEGLAPDGVTFLVLL 570
            H   +Q+ +  L P+ V   VLL
Sbjct: 499 -HRVAEQILQ--LKPNDVGTYVLL 519



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 126/272 (46%), Gaps = 19/272 (6%)

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           S F +F +N++I   + L   D + R+   M+      D  ++  VL  C        G 
Sbjct: 170 SGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGC 229

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            VHA       + NV+V +AL+ MY +CD    A   F+ + +    ++VSW  ++ AY 
Sbjct: 230 QVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEK---NVVSWTAVMTAYT 286

Query: 216 QSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
           Q+   E  L LF     D++++G   +  +   AL++CA L     G            +
Sbjct: 287 QNERFEDALQLFL----DLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHW 342

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
             + V      NA++  YS+ GS  DA+ +F  M       +VV+W++VI GYA  G   
Sbjct: 343 GALSV-----CNALMNMYSKSGSIHDAWRVFLSMPWR----DVVSWNSVIIGYAHHGLAR 393

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
           EA+ VF  M    + P+ VT V +L  CA +G
Sbjct: 394 EAMCVFHDMLLAEIVPSYVTFVGVLLACAQLG 425



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 28/325 (8%)

Query: 43  LLRQCKSLTQVYL---IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSP 97
           +L  C S  ++ L   +H Q + + L       S L+  Y   +    A S  + +    
Sbjct: 215 VLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEK- 273

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            +V  W A++    +    ++A +LFL +   G  P+E+T+   L +C  L + + G+++
Sbjct: 274 -NVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNAL 332

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            A    +G    + VCNALM MY++  ++  A ++F  M      D+VSWN+++  YA  
Sbjct: 333 SASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWR---DVVSWNSVIIGYAHH 389

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           G A   + +F  M    ++    V+ V  L ACA LG    G     +     + + M +
Sbjct: 390 GLAREAMCVFHDML-LAEIVPSYVTFVGVLLACAQLGLVDEG-----LYYLNIMMKEMGI 443

Query: 278 K-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG---YAQRGHGHE 333
           K     +  MV    R G  ++A      +    +  +VV W ++++    Y   G GH 
Sbjct: 444 KPGREHYTCMVGLLCRAGRLDEAEQF---ILSNCIGTDVVAWKSLLSSCQVYKNYGLGHR 500

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLS 358
             +     Q   L+PN V    LLS
Sbjct: 501 VAE-----QILQLKPNDVGTYVLLS 520


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 261/803 (32%), Positives = 404/803 (50%), Gaps = 49/803 (6%)

Query: 49  SLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNAL 106
           S+ Q  ++H  I   +L       + L+ AY        AL +  RI   P  + W  A+
Sbjct: 150 SIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQ-VPDLICWNAAI 208

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           +  A     PD A  L  +M   G  P+  +F  +L +CG+  S     S+HA +   GF
Sbjct: 209 MACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGF 268

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
             +V V  AL+ MY RC ++  +  +F+ M    + + VSWN ++AA+AQ G       +
Sbjct: 269 LGDVVVATALVTMYGRCGSVDESIAVFEAM---AVRNHVSWNAMIAAFAQCGHRSAAFAI 325

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------CGMMEEAKKVFERMKVK 278
           + RM  +   + + ++ V AL A  S  +   G+         C  +E            
Sbjct: 326 YWRMQQE-GFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLE-----------G 373

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV+   A+VT Y   G+ + A A F  +  +N+    V+W+A++  Y   G   EA+++F
Sbjct: 374 DVMVGTALVTMYGSTGAIDRARAAFDAIPAKNI----VSWNAMLTAYGDNGRAREAMELF 429

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
             M+   L PN V+ +++L  C  V        +   +I   +  +G    +  + N ++
Sbjct: 430 AAMKRQSLAPNKVSYLAVLGCCEDV--------SEARSIHAEVVGNGLFAQESSIANGVV 481

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
            M+A+  S++ A   FDA   K  D  +W   + + S     + A+  F  M  Q +  +
Sbjct: 482 RMFARSGSLEEAVAAFDATVVK--DSVSWNTKVAALSAREDLHGAITAFYTM--QHEGFR 537

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD-IDTAR 517
           P+ FTL   +  CA L  L  GR I   +           VA+ +++M ++ G  +D   
Sbjct: 538 PDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDECE 597

Query: 518 VVFDNL--KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR-KEGLAPDGVTFLVLLYACS 574
            +F  +   ++++V+W +++  Y  HG G KA   F  M+ +  + PD  TF+ +L  CS
Sbjct: 598 RLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCS 657

Query: 575 HSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           H+G+V+ G+  F    +  GI  +  EHYAC+VD+LGR   L EA + I  MP+    ++
Sbjct: 658 HAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVV 717

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W +LL  C  + ++E GE AA   +EL       Y +LSNIYA AGRW+D  R+R  M  
Sbjct: 718 WTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAE 777

Query: 694 TGVKKR-PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALH 752
             VKKR PG S +  K     FF  DR+HPQS  IY  L  L   I+  GYVP T   LH
Sbjct: 778 RRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREAGYVPDTRLVLH 837

Query: 753 DVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812
           DV++E+K  LL+ HSEKLA+A+G+++      IR+ KNLR+C DCH+A  FI+ +   EI
Sbjct: 838 DVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREI 897

Query: 813 ILRDSNRFHHF-KEGSCTCKGYW 834
            +RD NRFHHF K+G C+C  YW
Sbjct: 898 AVRDCNRFHHFGKDGECSCGDYW 920



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 164/619 (26%), Positives = 272/619 (43%), Gaps = 53/619 (8%)

Query: 37  IKITSLLLRQC---KSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYV---SHNAPSPALS 88
           I+  + LLR+C     L Q   +H+QI+ Q L    +  ++L+  Y    S +  + A S
Sbjct: 24  IETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFS 83

Query: 89  LLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM---RRGWHPDEYTFPFVLKAC 145
            L+        +  WN LI        P   F L+ +M    R    P++ T   VL A 
Sbjct: 84  ALR-----SRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAI 135

Query: 146 G----------ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
                        PS      VH  I  S  + ++FV  AL+  Y +C  +  A ++F  
Sbjct: 136 ASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSR 195

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255
           +  P   D++ WN  + A A + +     +L  R      +  +  S V  LS+C    +
Sbjct: 196 IQVP---DLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSS 252

Query: 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
               +         +V E   + DVV   A+VT Y R GS +++ A+F+ M       N 
Sbjct: 253 LPLARSIH-----ARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAM----AVRNH 303

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+A+IA +AQ GH   A  ++ +MQ  G  PN +T V+ L    S  +  LG+    +
Sbjct: 304 VSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALH 363

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
                  ++G    D+MV  AL+ MY    ++D AR  FDAI  KN  + +W  M+ +Y 
Sbjct: 364 GWIACAGLEG----DVMVGTALVTMYGSTGAIDRARAAFDAIPAKN--IVSWNAMLTAYG 417

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
            NG A +A+ LF  M +Q   + PN  +    L  C  ++     R IHA V+ N     
Sbjct: 418 DNGRAREAMELFAAMKRQS--LAPNKVSYLAVLGCCEDVSE---ARSIHAEVVGNGLFAQ 472

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
              +AN ++ M++RSG ++ A   FD    ++ VSW + +           A  AF  M+
Sbjct: 473 ESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQ 532

Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR-ANR 614
            EG  PD  T + ++  C+  G ++ G      +S    +       + +++++ +  + 
Sbjct: 533 HEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSS 592

Query: 615 LDEAVELIEGMPMEPTPII 633
           +DE   L   MP +   ++
Sbjct: 593 VDECERLFARMPDDRKDLV 611



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 145/545 (26%), Positives = 256/545 (46%), Gaps = 64/545 (11%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H  I   G   N  + N L+ MY++C +L  A   F  +   G   I +WNT++A 
Sbjct: 43  GRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSALRSRG---IATWNTLIA- 98

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------QCGMME 266
            AQS  A     L+ RM    K++    +  N L+  A LG  + G        +   + 
Sbjct: 99  -AQSSPA-AVFDLYTRM----KLEERAENRPNKLTIIAVLGAIASGDPSSSSSSRAPSIA 152

Query: 267 EAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           +A+ V + ++     +D+    A++  Y + G  E A  +F +++      +++ W+A I
Sbjct: 153 QARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVP----DLICWNAAI 208

Query: 323 ---AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
              AG  +R     AL + R+M   GL PN  + V++LS C    +L L +  H    + 
Sbjct: 209 MACAGNDER--PDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEE- 265

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L   G    D++V  AL+ MY +C SVD +  +F+A+A +N    +W  MI +++Q G 
Sbjct: 266 -LGFLG----DVVVATALVTMYGRCGSVDESIAVFEAMAVRNH--VSWNAMIAAFAQCGH 318

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ--IHAYVLRNQYEMLIP 497
            + A A++ +M Q+    +PN  T   AL A    ++   G    +H ++     E  + 
Sbjct: 319 RSAAFAIYWRMQQEG--FRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDV- 375

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            V   L+ MY  +G ID AR  FD +  +N+VSW +++T YG +G   +A   F  M+++
Sbjct: 376 MVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQ 435

Query: 558 GLAPDGVTFLVLLYACS--------HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609
            LAP+ V++L +L  C         H+ +V  GL      ++E  I+        +V + 
Sbjct: 436 SLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGL-----FAQESSIA------NGVVRMF 484

Query: 610 GRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669
            R+  L+EAV   +   ++ + + W   +       ++  G + A   ++ E  +   +T
Sbjct: 485 ARSGSLEEAVAAFDATVVKDS-VSWNTKVAALSAREDLH-GAITAFYTMQHEGFRPDKFT 542

Query: 670 LLSNI 674
           L+S +
Sbjct: 543 LVSVV 547



 Score = 46.6 bits (109), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 88/246 (35%), Gaps = 53/246 (21%)

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           TL+  L  C   A L  GRQ+H  +++ Q       + N L+ MYS+   +D A   F  
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVK-QGLARNDLLGNYLVQMYSKCRSLDDANAAFSA 84

Query: 523 LKQRNVVSWTSLMTG--------------------------------YGMHGLGD----- 545
           L+ R + +W +L+                                   G    GD     
Sbjct: 85  LRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSSSS 144

Query: 546 --------KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
                   +A    D +R   L  D      LL A    G V+  L+ F  +     I  
Sbjct: 145 SSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICW 204

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPME---PTPIIWVALLNGCRIHANVELGELAA 654
            A   AC     G   R D A+ L+  M +E   P    +VA+L+ C  H+++ L     
Sbjct: 205 NAAIMACA----GNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIH 260

Query: 655 NRLLEL 660
            R+ EL
Sbjct: 261 ARVEEL 266


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 334/561 (59%), Gaps = 28/561 (4%)

Query: 292 RIGSFEDAFALFKKMR---------------QENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           R G  +D F +F+ +R               Q     NV  ++A+I G+   G+  +A+ 
Sbjct: 57  RNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQ 116

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           ++ +M    + P+   + S+L  C S  AL  G+E H   +K  LS       + +V   
Sbjct: 117 LYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLS------SNRLVRLR 170

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKN---RDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           ++++Y KC  +  AR +F+ + P++   +D   WT MI  + +N   N AL  F  M  Q
Sbjct: 171 IMELYGKCGELGDARRVFEEM-PEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGM--Q 227

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
            + V+PN FT+ C L AC++L AL  GR +H+Y+ + + E+ + FV N LI+MYSR G I
Sbjct: 228 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL-FVGNALINMYSRCGSI 286

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D A+ VFD +K R+V+++ ++++G  M+G   +A   F  M    L P  VTF+ +L AC
Sbjct: 287 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 346

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH G+VD G K F SM++++G+  + EHY C+VDLLGR  RL+EA +LI  M M P  I+
Sbjct: 347 SHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIM 406

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
              LL+ C++H N+ELGE  A  L +      G+Y LLS++YA++G+WK+ A++R+ MK 
Sbjct: 407 LGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 466

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            G++K PGCS ++       F +GD  HP+ ++IYE L  L + ++  GY P+    L D
Sbjct: 467 AGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQD 526

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           ++D EK   L  HSE+LA+ YG+++T P T IR+ KNLR+C DCHSAI  I+ I   +++
Sbjct: 527 IEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVV 586

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD NRFH+F+ G+C+C  YW
Sbjct: 587 VRDRNRFHYFENGACSCGDYW 607



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 207/428 (48%), Gaps = 33/428 (7%)

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           +HA +  +G   + F+   L+   ++C  + YA ++F     P   ++  +  ++  +  
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNP---NVYLYTALIDGFVS 107

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           SG+    + L++RM  D  +  D   + + L AC        G Q  +  E ++V  R  
Sbjct: 108 SGNYFDAIQLYSRMLHD-SILPDNYLMASILKAC--------GSQLAL-REGREVHSR-A 156

Query: 277 VKDVVSWNAMV-----TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
           +K  +S N +V       Y + G   DA  +F++M ++ V  + V W+A+I G+ +    
Sbjct: 157 LKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEM 216

Query: 332 HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
           + AL+ FR MQ   + PN  T+V +LS C+ +GAL +G+  H Y  K  + +      +L
Sbjct: 217 NRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL------NL 270

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
            V NALI+MY++C S+D A+ +FD +  K+RDV T+  MI   S NG +  A+ LF  M 
Sbjct: 271 FVGNALINMYSRCGSIDEAQTVFDEM--KDRDVITYNTMISGLSMNGKSRQAIELFRVMI 328

Query: 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ-YEMLIPFVANCLIDMYSRS 510
              + ++P   T    L AC+    + FG +I   + R+   E  I     C++D+  R 
Sbjct: 329 --GRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYG-CMVDLLGRV 385

Query: 511 GDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
           G ++ A  +   +K   + +   +L++   MH   +        +   G A  G T+++L
Sbjct: 386 GRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG-TYVLL 444

Query: 570 LYACSHSG 577
            +  + SG
Sbjct: 445 SHVYASSG 452



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 163/332 (49%), Gaps = 19/332 (5%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFS 99
           LL++ K + QV  IH Q+I    +  P   ++   +   +   A+    RI   + +P +
Sbjct: 38  LLQRSKHINQVLPIHAQLIRNGHSQDP--FMVFELLRSCSKCHAIDYASRIFQYTHNP-N 94

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V+ + ALI   V      +A +L+ +M+     PD Y    +LKACG   + R G  VH+
Sbjct: 95  VYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHS 154

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSG 218
                G  SN  V   +M +Y +C  L  AR++F+EM +  +  D V W  ++  + ++ 
Sbjct: 155 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNE 214

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           +    L  F  M G+  V+ +  ++V  LSAC+ LG    G+             + +++
Sbjct: 215 EMNRALEAFRGMQGE-NVRPNEFTIVCVLSACSQLGALEIGRW------VHSYMRKFEIE 267

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            ++   NA++  YSR GS ++A  +F +M+      +V+T++ +I+G +  G   +A+++
Sbjct: 268 LNLFVGNALINMYSRCGSIDEAQTVFDEMKDR----DVITYNTMISGLSMNGKSRQAIEL 323

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           FR M    L P  VT V +L+ C+  G +  G
Sbjct: 324 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 355



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 18/210 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I   VR    + A   F  M      P+E+T   VL AC +L +   G  VH+ + 
Sbjct: 203 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 262

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + N+FV NAL+ MY+RC ++  A+ +FDEM      D++++NT+++  + +G +  
Sbjct: 263 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR---DVITYNTMISGLSMNGKSRQ 319

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            + LF  M G  +++   V+ V  L+AC+           G+++   K+F  M       
Sbjct: 320 AIELFRVMIGR-RLRPTNVTFVGVLNACS---------HGGLVDFGFKIFHSMTRDYGVE 369

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
             +  +  MV    R+G  E+A+ L + M+
Sbjct: 370 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMK 399


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 330/571 (57%), Gaps = 15/571 (2%)

Query: 264 MMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
           +++ A +VF +++  ++  +N+ + G+S     + +F  + + ++  +  + +T+  ++ 
Sbjct: 62  LLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVK 121

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
              Q+G     +    Q+   G + +V    SL++  +++G +    ++  Y  +R+  +
Sbjct: 122 ACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDI----KSASYVFRRISCL 177

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
           D      ++   +++  Y K   V  AR +FD +  KN  + TW+VMI  Y++N   + A
Sbjct: 178 D------VVSWTSMVAGYIKSGDVTSARKLFDKMPEKN--LVTWSVMISGYAKNSFFDKA 229

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           + L+     Q + V  N   +   + +CA L AL  G + H Y+LRN+  + +  +   L
Sbjct: 230 IELY--FLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNL-ILGTAL 286

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           +DMY+R G ID A  VFD L  R+ +SWT+L+ G+ MHG  +KA   F +M K GL P  
Sbjct: 287 VDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPRE 346

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +TF  +L ACSH G+V++GL+ F+SM +++ I  R EHY C+VDLLGRA +L EA + + 
Sbjct: 347 ITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVN 406

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            MPM+P   IW ALL  CRIH N E+ E A   L+EL+ E  G Y LLSNIYA   +W++
Sbjct: 407 EMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWEN 466

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           V  IR +MK  GV K PG +  +       F +GD+THP+ Q+I  +   ++ +I+  GY
Sbjct: 467 VENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGY 526

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
                 AL D+D+EEK   +  HSEKLA+AY I+ T    PIRI KNLR+C DCH+A   
Sbjct: 527 TGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKL 586

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS +   E+I+RD NRFHHFK G+C+C  YW
Sbjct: 587 ISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 174/362 (48%), Gaps = 48/362 (13%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
            L  C +L+ + +IH  +I  +        S LI+  ++ N    A  +  +I  +P ++
Sbjct: 21  FLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQ-NP-NL 78

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F +N+ IR     + PD +F  ++Q  R G  PD  T+PF++KAC +  S   G   H  
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I   GFDS+V+V N+L+ MY+    +  A  +F  +      D+VSW ++VA Y +SGD 
Sbjct: 139 IIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRI---SCLDVVSWTSMVAGYIKSGDV 195

Query: 221 EGGLMLFARM------------TGDVK-------------VQGDGVS-----LVNALSAC 250
                LF +M            +G  K             +Q +GV      +V+ +++C
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASC 255

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           A LG    G      E A     R K+  +++   A+V  Y+R GS + A  +F ++   
Sbjct: 256 AHLGALELG------ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR 309

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
               + ++W+ +IAG+A  G+  +AL+ F +M+  GL P  +T  ++LS C+  G +  G
Sbjct: 310 ----DALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERG 365

Query: 370 KE 371
            E
Sbjct: 366 LE 367



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L +C  L+ L+    IHA+++R  + +   F A+CLI +      +D A  VF  ++  N
Sbjct: 22  LESCTTLSHLKI---IHAHLIR-AHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPN 77

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
           +  + S + G+      DK+   + Q ++ GL PD +T+  L+ AC+  G +D G++
Sbjct: 78  LFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/582 (36%), Positives = 324/582 (55%), Gaps = 43/582 (7%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y + G  +DA  LF  + + +     V W++++         H AL + R +  
Sbjct: 42  NTLLNAYGKCGLIQDALQLFDALPRRDP----VAWASLLTACNLSNRPHRALSISRSLLS 97

Query: 344 CGLEPNVVTLVSLLSGCASVGALLL--GKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
            G  P+     SL+  CA++G L +  GK+ H        S      DD +V ++LIDMY
Sbjct: 98  TGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFS------DDDVVKSSLIDMY 151

Query: 402 AKCKSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIG 432
           AK    D  R +FD+I+  N                             R++  WT +I 
Sbjct: 152 AKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALIS 211

Query: 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492
              Q+G   DA  LF +M + + +   +   LS  + ACA LA    G+Q+H  V+   Y
Sbjct: 212 GLVQSGNGVDAFHLFVEM-RHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGY 270

Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
           E  + F++N LIDMY++  D+  A+ +F  + +++VVSWTS++ G   HG  ++A   +D
Sbjct: 271 ESCL-FISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYD 329

Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           +M   G+ P+ VTF+ L++ACSH+G+V +G   F +M ++ GIS   +HY C++DL  R+
Sbjct: 330 EMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRS 389

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
             LDEA  LI  MP+ P    W ALL+ C+ H N ++    A+ LL L+ E   SY LLS
Sbjct: 390 GHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLS 449

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           NIYA AG W+DV+++R LM     KK PG S +   +G+  F+ G+ +HP   +I  ++ 
Sbjct: 450 NIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMR 509

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L + ++  GY P TS  LHD+D +EK   LF HSE+LA+AYG+L   PGT IRI KNLR
Sbjct: 510 ELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLR 569

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +CGDCH+ +  IS I N EI +RD+ R+HHFK+G+C+C  +W
Sbjct: 570 VCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 110/563 (19%)

Query: 56  IHQQIIVQNLT-HVP-PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRL 113
           +H QII   L  H P P+ L+ AY        AL L   + P    V W + L    +  
Sbjct: 25  LHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDAL-PRRDPVAWASLLTACNLSN 83

Query: 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP--SSRCGSSVHAVICSSGFDSNVF 171
           R P  A  +   ++  G+HPD + F  ++KAC  L     + G  VHA    S F  +  
Sbjct: 84  R-PHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDV 142

Query: 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR-- 229
           V ++L+ MYA+     Y R +FD +      + +SW T+++ YA+SG       LF +  
Sbjct: 143 VKSSLIDMYAKFGLPDYGRAVFDSISS---LNSISWTTMISGYARSGRKFEAFRLFRQTP 199

Query: 230 ---------------MTGD--------VKVQGDGVSLVNAL------SACASLGTWSRGK 260
                           +G+        V+++ +G+S+ + L       ACA+L  W  GK
Sbjct: 200 YRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGK 259

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           Q   +     V        +   NA++  Y++      A  +F +M     + +VV+W++
Sbjct: 260 QMHGV-----VITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEM----CRKDVVSWTS 310

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +I G AQ G   EAL ++ +M   G++PN VT V L+  C+  G +  G+     T+ R 
Sbjct: 311 IIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGR-----TLFRT 365

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
           +  D      L     L+D++++   +D A  +   + P N D  TW  ++ S  ++G  
Sbjct: 366 MVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTM-PVNPDEPTWAALLSSCKRHGNT 424

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
             A+ +   +      +KP   +                     +Y+L            
Sbjct: 425 QMAVRIADHLLN----LKPEDPS---------------------SYIL------------ 447

Query: 501 NCLIDMYSRSG---DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGL--GDKAHWAFD--- 552
             L ++Y+ +G   D+   R +   L+ +    ++ +  G G H    G+ +H   D   
Sbjct: 448 --LSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEII 505

Query: 553 --------QMRKEGLAPDGVTFL 567
                   +MRK G APD  + L
Sbjct: 506 GLMRELDEEMRKRGYAPDTSSVL 528



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 23/194 (11%)

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
           LL K+ H   IK  L+     P      N L++ Y KC  +  A  +FDA+ P+ RD   
Sbjct: 20  LLAKKLHAQIIKAGLNQHEPIP------NTLLNAYGKCGLIQDALQLFDAL-PR-RDPVA 71

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL--RFGRQIH 484
           W  ++ + + +   + AL++   +        P+ F  +  + ACA L  L  + G+Q+H
Sbjct: 72  WASLLTACNLSNRPHRALSISRSLLSTG--FHPDHFVFASLVKACANLGVLHVKQGKQVH 129

Query: 485 AYVLRNQYEMLIPF-----VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           A         L PF     V + LIDMY++ G  D  R VFD++   N +SWT++++GY 
Sbjct: 130 ARFF------LSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYA 183

Query: 540 MHGLGDKAHWAFDQ 553
             G   +A   F Q
Sbjct: 184 RSGRKFEAFRLFRQ 197



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLR---NQYEMLIPFVANCLIDMYSRSGDIDTAR 517
           A +L   L + AR + L   +++HA +++   NQ+E     + N L++ Y + G I  A 
Sbjct: 4   AQSLQSQLCSAARQSPL-LAKKLHAQIIKAGLNQHEP----IPNTLLNAYGKCGLIQDAL 58

Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
            +FD L +R+ V+W SL+T   +     +A      +   G  PD   F  L+ AC++ G
Sbjct: 59  QLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLG 118

Query: 578 M--VDQG 582
           +  V QG
Sbjct: 119 VLHVKQG 125


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/704 (33%), Positives = 384/704 (54%), Gaps = 37/704 (5%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           ++  + +ACG++ S   G   H  +  +  +   F+ N+++ MY +C +L+ AR++FDEM
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            +    ++VSWNTI++AYA++G  + G  +F+ M  +++ + +G + +  L +  +    
Sbjct: 72  RER---NLVSWNTIISAYAENGVFDKGFCMFSNML-ELETKPNGSTYIGFLRSLLNPSGL 127

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
             GKQ         +     V   +S       Y + G  E A  +F+KM ++N     V
Sbjct: 128 EIGKQIHSHAIRSGLGSNASVNTAIS-----NMYVKCGWLEGAELVFEKMSEKNA----V 178

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            W+ ++ GY Q     +AL +F +M   G+E +      +L  CA +  L  G++ H + 
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K  L        ++ V   L+D Y KC +++ A   F+ I+  N DV +W+ +I  Y Q
Sbjct: 239 VKLGLE------SEVSVGTPLVDFYVKCSNLESATKAFEWISEPN-DV-SWSALITGYCQ 290

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
            G   +AL  F  +  + + V  N+FT +    AC+ LA    G Q HA  +++    L+
Sbjct: 291 MGEFEEALKTFESL--RTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSS---LV 345

Query: 497 PFV--ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
            +    + +I MYSR G +D A  VF+++   + V+WT+++ GY   G   +A   F +M
Sbjct: 346 AYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRM 405

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           +  G+ P+ VTF+ +L ACSHSG+V +G +Y +SMS  +G++   +HY C+VD+  RA  
Sbjct: 406 QDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGF 465

Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
           L EA+ELI  MP  P  + W  LL GC  + N+E+GELAA  L +L+ E    Y L+ N+
Sbjct: 466 LQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNL 525

Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
           YA+ G+WK+ A +R +M    ++K   CSW+  K     F VGD+ HPQ+++IY  L  L
Sbjct: 526 YASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEAL 585

Query: 735 VQRI--KAMGYVPQTSFALHDVDDE--EKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
              +  +  G + +      DV +   E+ + L  HSE+LALA+G+++T    P+ + KN
Sbjct: 586 NDSVIKEETGLLTE-----EDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKN 640

Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           LR C DCH     +S+I   EI++RDS RFHHFK G C+C  YW
Sbjct: 641 LRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 142/557 (25%), Positives = 232/557 (41%), Gaps = 85/557 (15%)

Query: 48  KSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI--SPSPFSVFWWNA 105
           KSL    L H+Q+  Q     PP  L  + +       +L+  +++       ++  WN 
Sbjct: 24  KSLFDGRLFHEQM--QRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNT 81

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +I       + D  F +F  M+     P+  T+   L++         G  +H+    SG
Sbjct: 82  IISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSG 141

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
             SN  V  A+  MY +C  L  A  +F++M +    + V+W  I+  Y Q+      L 
Sbjct: 142 LGSNASVNTAISNMYVKCGWLEGAELVFEKMSEK---NAVAWTGIMVGYTQAERQMDALA 198

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------------------ 261
           LFA+M  +  V+ D       L ACA L   + G+Q                        
Sbjct: 199 LFAKMVNE-GVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFY 257

Query: 262 --CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
             C  +E A K FE +   + VSW+A++TGY ++G FE+A   F+ +R  +V +N  T++
Sbjct: 258 VKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYT 317

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
                                              S+   C+++     G + H   IK 
Sbjct: 318 -----------------------------------SIFQACSALADFNSGAQAHADAIKS 342

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L V   H +     +A+I MY++C  +D A  +F++I   + D   WT +I  Y+  G 
Sbjct: 343 SL-VAYQHGE-----SAMITMYSRCGRLDYATRVFESI--DDPDAVAWTAIIAGYAYQGN 394

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
           A +AL LF +M  QD  V+PNA T    L AC+    +  GRQ    +  N         
Sbjct: 395 APEALKLFRRM--QDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDH 452

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTG---YGMHGLGDKAHWAFDQMR 555
            +C++D+YSR+G +  A  +  ++    + +SW  L+ G   Y    +G+ A     Q+ 
Sbjct: 453 YDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLD 512

Query: 556 KEGLAPDGVTFLVLLYA 572
            E  A  G   +  LYA
Sbjct: 513 PEDTA--GYILMFNLYA 527


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/696 (34%), Positives = 369/696 (53%), Gaps = 70/696 (10%)

Query: 152 RCGSSVHAVICSSGFDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-------- 202
           R   +VH +I  +   +   F+ N L+  YA+   L+ AR++FDEM  P +         
Sbjct: 29  RVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSA 88

Query: 203 --------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
                               D VS+N ++  ++ +G     + L+  +  +  V+   ++
Sbjct: 89  LAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRIT 148

Query: 243 LVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMK 276
           L   +   ++L   + G                           + G++ +A++VF+ M+
Sbjct: 149 LSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEME 208

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
            K VV +N ++TG  R    EDA  LF+ M    V  + +TW+ ++ G  Q G   EALD
Sbjct: 209 AKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           VFR+M+  G+  +  T  S+L+ C ++ AL  GK+ H Y I R       + D++ V +A
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY-ITRTW-----YEDNVFVGSA 318

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L+DMY+KC+S+ +A  +F  +  +N  + +WT MI  Y QN  + +A+  F +M Q D  
Sbjct: 319 LVDMYSKCRSIRLAEAVFRRMTCRN--IISWTAMIVGYGQNACSEEAVRAFSEM-QMDG- 374

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           +KP+ FTL   + +CA LA+L  G Q H   L +     I  V+N L+ +Y + G I+ A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT-VSNALVTLYGKCGSIEDA 433

Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
             +FD +   + VSWT+L+TGY   G   +    F++M   GL PDGVTF+ +L ACS +
Sbjct: 434 HRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRA 493

Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
           G+V++G  YFDSM K+ GI    +HY C++DL  R+ R  EA E I+ MP  P    W  
Sbjct: 494 GLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
           LL+ CR+  N+E+G+ AA  LLE + +   SY LL +++A  G+W +VA +R  M+   V
Sbjct: 554 LLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613

Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
           KK PGCSW++ K     F   D++HP S +IYE L  L  ++   GY P  S  LHDV D
Sbjct: 614 KKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVAD 673

Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            +K  ++  HSEKLA+A+G++      PIRI KNLR
Sbjct: 674 ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLR 709



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 141/560 (25%), Positives = 235/560 (41%), Gaps = 87/560 (15%)

Query: 60  IIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLP 116
           +I++     PP+ L+   ++  A S  L+  +R+    P P ++F  NAL+      RL 
Sbjct: 37  LILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDP-NLFTRNALLSALAHSRLV 95

Query: 117 DNAFRLFLQMMRR--------------------------------GWHPDEYTFPFVLKA 144
            +  RLF  M  R                                   P   T   ++  
Sbjct: 96  PDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMV 155

Query: 145 CGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-- 202
              L     G SVH  +   GF +  FV + L+ MYA+   +  AR++F EM    +   
Sbjct: 156 ASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 203 --------------------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKV 236
                                     D ++W T+V    Q+G     L +F RM  +  V
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE-GV 274

Query: 237 QGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD-VVSWNAMVTGYSRIGS 295
             D  +  + L+AC +L     GKQ            R   +D V   +A+V  YS+  S
Sbjct: 275 GIDQYTFGSILTACGALAALEEGKQI------HAYITRTWYEDNVFVGSALVDMYSKCRS 328

Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
              A A+F++M   N    +++W+A+I GY Q     EA+  F +MQ  G++P+  TL S
Sbjct: 329 IRLAEAVFRRMTCRN----IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
           ++S CA++ +L  G + HC      L++       + V NAL+ +Y KC S++ A  +FD
Sbjct: 385 VISSCANLASLEEGAQFHC------LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFD 438

Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
            ++    D  +WT ++  Y+Q G A + + LF +M      +KP+  T    L AC+R  
Sbjct: 439 EMS--FHDQVSWTALVTGYAQFGKAKETIDLFEKMLANG--LKPDGVTFIGVLSACSRAG 494

Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSL 534
            +  G      + ++   + I     C+ID+YSRSG    A      +    +   W +L
Sbjct: 495 LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 535 MTGYGMHGLGDKAHWAFDQM 554
           ++   + G  +   WA + +
Sbjct: 555 LSSCRLRGNMEIGKWAAENL 574



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 181/389 (46%), Gaps = 29/389 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W  ++    +  L   A  +F +M   G   D+YTF  +L ACG L +   G  +HA I 
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIVAAYAQSGDAE 221
            + ++ NVFV +AL+ MY++C ++  A  +F  M     C +I+SW  ++  Y Q+  +E
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM----TCRNIISWTAMIVGYGQNACSE 361

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             +  F+ M  D  ++ D  +L + +S+CA+L +   G Q   +     +   + V    
Sbjct: 362 EAVRAFSEMQMD-GIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS--- 417

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             NA+VT Y + GS EDA  LF +M       + V+W+A++ GYAQ G   E +D+F +M
Sbjct: 418 --NALVTLYGKCGSIEDAHRLFDEMSFH----DQVSWTALVTGYAQFGKAKETIDLFEKM 471

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
              GL+P+ VT + +LS C+  G +    E  C     +    G  P D      +ID+Y
Sbjct: 472 LANGLKPDGVTFIGVLSACSRAGLV----EKGCDYFDSMQKDHGIVPIDDHY-TCMIDLY 526

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
           ++      A      + P + D   W  ++ S    G           + + D    P +
Sbjct: 527 SRSGRFKEAEEFIKQM-PHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDP-QNPAS 584

Query: 462 FTLSCALMAC----ARLAALRFG---RQI 483
           + L C++ A       +A LR G   RQ+
Sbjct: 585 YVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 325/552 (58%), Gaps = 21/552 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y + G  ++A  LF +M   NV    V+W+ +I+ Y+     H+ALD    M  
Sbjct: 55  NTLINMYVKFGLLDEARNLFDEMPDRNV----VSWTTMISAYSNSNLNHKALDFLILMLR 110

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ PN+ T  S+L  C     LL  ++ H   +K  L        D+ V +ALID Y+K
Sbjct: 111 EGVRPNMYTYSSVLRAC---DGLLNLRQLHGSILKVGLE------SDVFVRSALIDTYSK 161

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
                 A  +F+ +     D+  W  +IG ++QN   ++ L L+ +M + D +   +  T
Sbjct: 162 LGEQHDALNVFNEMITG--DLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQS--T 217

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L+  L AC  LA L  GRQ+H +VL+   ++++    N L+DMY + G ++ A ++F  +
Sbjct: 218 LTSVLRACTGLALLELGRQVHVHVLKYDQDLILN---NALLDMYCKCGSLEDANLLFTRM 274

Query: 524 -KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
             +++V+SW++++ G   +G    A   F+ M+ +G  P+ +T L +L+ACSH+G+V+ G
Sbjct: 275 MTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDG 334

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
             YF SM + FGI    EHY CI+DLLGRA +LDEAV+LI  M  EP  + W  LL  CR
Sbjct: 335 WYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACR 394

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H NV+L   AA  +L+L+    G+Y LLSNIYAN+ +W+DVA +R  M+  GVKK PGC
Sbjct: 395 VHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGC 454

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           SW++  +    F +GD +HP+ ++I   L+ L+QR+  +GYVP T+F L D++ E+  D 
Sbjct: 455 SWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDS 514

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLA+ +G+++      I I KNLRICGDCH     +S + N  I++RD  R+HH
Sbjct: 515 LQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHH 574

Query: 823 FKEGSCTCKGYW 834
           F+ G C+C  YW
Sbjct: 575 FRGGVCSCGDYW 586



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 41/330 (12%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPPSHLIAA----YVSHNAPSPALSLLQRISPSPFSVFWWN 104
           ++ Q  L+H+ +      + P + LI      YV       A +L   +     +V  W 
Sbjct: 31  AVQQARLVHEHVFSNG--YEPKTFLINTLINMYVKFGLLDEARNLFDEMPDR--NVVSWT 86

Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
            +I       L   A    + M+R G  P+ YT+  VL+AC  L + R    +H  I   
Sbjct: 87  TMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKV 143

Query: 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224
           G +S+VFV +AL+  Y++      A  +F+EM      D+V WN+I+  +AQ+ D +  L
Sbjct: 144 GLESDVFVRSALIDTYSKLGEQHDALNVFNEMITG---DLVVWNSIIGGFAQNSDGDETL 200

Query: 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ----------------------- 261
            L+ RM        D  +L + L AC  L     G+Q                       
Sbjct: 201 HLYKRMK-RADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYC 259

Query: 262 -CGMMEEAKKVFERMKV-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
            CG +E+A  +F RM   KDV+SW+ M+ G ++ G   DA  LF+ M+ +  K N +T  
Sbjct: 260 KCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITIL 319

Query: 320 AVIAGYAQRGHGHEALDVFRQM-QFCGLEP 348
            V+   +  G  ++    F+ M +  G++P
Sbjct: 320 GVLFACSHAGLVNDGWYYFQSMKEHFGIDP 349



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 31/302 (10%)

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           L  + +T   L+  C   GA+   +  H +        +G  P   + IN LI+MY K  
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFS-----NGYEPKTFL-INTLINMYVKFG 65

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
            +D AR +FD +   +R+V +WT MI +YS +   + AL     M ++   V+PN +T S
Sbjct: 66  LLDEARNLFDEMP--DRNVVSWTTMISAYSNSNLNHKALDFLILMLREG--VRPNMYTYS 121

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             L AC  L  L   RQ+H  +L+   E  + FV + LID YS+ G+   A  VF+ +  
Sbjct: 122 SVLRACDGLLNL---RQLHGSILKVGLESDV-FVRSALIDTYSKLGEQHDALNVFNEMIT 177

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG--- 582
            ++V W S++ G+  +  GD+    + +M++     D  T   +L AC+   +++ G   
Sbjct: 178 GDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV 237

Query: 583 ----LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
               LKY   +               ++D+  +   L++A  L   M  E   I W  ++
Sbjct: 238 HVHVLKYDQDLILN----------NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMI 287

Query: 639 NG 640
            G
Sbjct: 288 AG 289


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 332/561 (59%), Gaps = 28/561 (4%)

Query: 292 RIGSFEDAFALFKKMR---------------QENVKLNVVTWSAVIAGYAQRGHGHEALD 336
           R G  +D F +F+ +R               Q     NV  ++A+I G+   G+  EA+ 
Sbjct: 64  RNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQ 123

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           ++ +M    + P+   + S+L  C S  AL  G+E H   +K   S       + +V   
Sbjct: 124 LYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS------SNRLVRLR 177

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKN---RDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           ++++Y KC  +  AR +F+ + P++   +D   WT MI  + +N   N AL  F  M  Q
Sbjct: 178 IMELYGKCGELGDARRVFEEM-PEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGM--Q 234

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
            + V+PN FT+ C L AC++L AL  GR +H+Y+ + + E+ + FV N LI+MYSR G I
Sbjct: 235 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL-FVGNALINMYSRCGSI 293

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D A+ VFD +K R+V+++ ++++G  M+G   +A   F  M    L P  VTF+ +L AC
Sbjct: 294 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 353

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH G+VD G + F SM++++ +  + EHY C+VDLLGR  RL+EA +LI  M M P  I+
Sbjct: 354 SHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIM 413

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
              LL+ C++H N+ELGE  A  L +      G+Y LLS++YA++G+WK+ A++R+ MK 
Sbjct: 414 LGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 473

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            G++K PGCS ++       F +GD  HPQ ++IYE L  L + ++  GY P+    L D
Sbjct: 474 AGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQD 533

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           ++D EK   L  HSE+LA+ YG+++T P T IR+ KNLR+C DCHSAI  I+ I   +I+
Sbjct: 534 IEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIV 593

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD NRFH+F+ G+C+C  YW
Sbjct: 594 VRDRNRFHYFENGACSCGDYW 614



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 220/462 (47%), Gaps = 42/462 (9%)

Query: 132 HPDEYTFPFVLKACGE------LPSSRCGSSV---HAVICSSGFDSNVFVCNALMAMYAR 182
           HP+  + P  LK+  +      L  SR  + V   HA +  +G   + F+   L+   ++
Sbjct: 24  HPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSK 83

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
           C  + YA ++F     P   ++  +  ++  +  SG+    + L++RM  +  +  D   
Sbjct: 84  CHAIDYASRIFQYTHNP---NVYLYTALIDGFVSSGNYLEAIQLYSRMLHE-SILPDNYL 139

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV-----TGYSRIGSFE 297
           + + L AC        G Q  +  E ++V  R  +K   S N +V       Y + G   
Sbjct: 140 MASILKAC--------GSQLAL-REGREVHSR-ALKLGFSSNRLVRLRIMELYGKCGELG 189

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           DA  +F++M ++ V  + V W+A+I G+ +    + AL+ FR MQ   + PN  T+V +L
Sbjct: 190 DARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVL 249

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
           S C+ +GAL +G+  H Y  K  + +      +L V NALI+MY++C S+D A+ +FD +
Sbjct: 250 SACSQLGALEIGRWVHSYMRKFEIEL------NLFVGNALINMYSRCGSIDEAQTVFDEM 303

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             K+RDV T+  MI   S NG +  A+ LF  M    + ++P   T    L AC+    +
Sbjct: 304 --KDRDVITYNTMISGLSMNGKSRQAIELFRVMV--GRRLRPTNVTFVGVLNACSHGGLV 359

Query: 478 RFGRQI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLM 535
            FG +I H+     + E  I     C++D+  R G ++ A  +   +K   + +   +L+
Sbjct: 360 DFGFEIFHSMARDYRVEPQIEHYG-CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 418

Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
           +   MH   +       ++   G A  G T+++L +  + SG
Sbjct: 419 SACKMHKNLELGEQVAKELEDRGQADSG-TYVLLSHVYASSG 459



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 173/361 (47%), Gaps = 20/361 (5%)

Query: 16  PLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIA 75
           P    H  +N    S+ +    +I SLL R  + + QV  IH Q+I    +  P   ++ 
Sbjct: 19  PSPKPHPNSNSNPKSLKSLDQKQIISLLQRS-RHINQVLPIHAQLIRNGHSQDP--FMVF 75

Query: 76  AYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
             +   +   A+    RI   + +P +V+ + ALI   V       A +L+ +M+     
Sbjct: 76  ELLRSCSKCHAIDYASRIFQYTHNP-NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESIL 134

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           PD Y    +LKACG   + R G  VH+     GF SN  V   +M +Y +C  L  AR++
Sbjct: 135 PDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRV 194

Query: 193 FDEMFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           F+EM +  +  D V W  ++  + ++ +    L  F  M G+  V+ +  ++V  LSAC+
Sbjct: 195 FEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGE-NVRPNEFTIVCVLSACS 253

Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
            LG    G+             + +++ ++   NA++  YSR GS ++A  +F +M+   
Sbjct: 254 QLGALEIGRW------VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR- 306

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
              +V+T++ +I+G +  G   +A+++FR M    L P  VT V +L+ C+  G +  G 
Sbjct: 307 ---DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGF 363

Query: 371 E 371
           E
Sbjct: 364 E 364



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 18/210 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I   VR    + A   F  M      P+E+T   VL AC +L +   G  VH+ + 
Sbjct: 210 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 269

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               + N+FV NAL+ MY+RC ++  A+ +FDEM      D++++NT+++  + +G +  
Sbjct: 270 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR---DVITYNTMISGLSMNGKSRQ 326

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM----KVK 278
            + LF  M G  +++   V+ V  L+AC+           G+++   ++F  M    +V+
Sbjct: 327 AIELFRVMVGR-RLRPTNVTFVGVLNACS---------HGGLVDFGFEIFHSMARDYRVE 376

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
             +  +  MV    R+G  E+A+ L + M+
Sbjct: 377 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMK 406


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 328/551 (59%), Gaps = 13/551 (2%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y + G   +A ++F +++++N   +V++W+ +I  Y Q G G EAL +F+ M  
Sbjct: 63  NLLIEMYGKCGGIAEARSVFDQIQEKNA--DVISWNGIIGAYTQNGLGKEALHLFKTMDL 120

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+  N VTL++ +  CAS+ +   G+  H       ++VD     D MV  +L++M+ K
Sbjct: 121 EGVIANQVTLINAIDACASLPSEEEGRIVHA------IAVDKRLESDTMVGTSLVNMFGK 174

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
           CK+VD AR +FD++  KN  + TW  M+  YSQN     A+ +F   F   + V+P+A T
Sbjct: 175 CKNVDAARAVFDSLPRKN--LVTWNNMVAVYSQNWQCKKAIQVF--RFMDLEGVQPDAVT 230

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
               + ACA LAA   GR +H  +  +   M +      ++  Y + G +D AR +FD+L
Sbjct: 231 FLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL-GTAVMHFYGKCGRLDNARAIFDSL 289

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
            ++N V+W++++  Y  +G   +A   + +M + GL  +G+TFL LL+ACSH+G    G+
Sbjct: 290 GKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGV 349

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YF SM ++FG+    EHY  ++DLLGR+ +L  + +LI  MP EP    W+ALL  CR+
Sbjct: 350 DYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRM 409

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H +V+ G   A  + EL+ E  G Y LLSN+Y++ GR  +  R R  M+  G+ K+PG S
Sbjct: 410 HGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLS 469

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
            ++ K+    F    + HPQ  +I+  +  L  R+K  GYV      L DV++EEK  LL
Sbjct: 470 SIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLL 529

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
           + HSE+LA+A+G+++T PGT + I KNLR+C DCH+A+  IS ++  +I++RD+ RFHHF
Sbjct: 530 WYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHF 589

Query: 824 KEGSCTCKGYW 834
           + G+C+C  YW
Sbjct: 590 ENGACSCGDYW 600



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 241/469 (51%), Gaps = 32/469 (6%)

Query: 137 TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196
           T+  +LK C +  +   G  VH+ +   G+ S+  + N L+ MY +C  ++ AR +FD++
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 197 FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256
            Q    D++SWN I+ AY Q+G  +  L LF  M  +  V  + V+L+NA+ ACASL + 
Sbjct: 86  -QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLE-GVIANQVTLINAIDACASLPSE 143

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
             G+    +  A  V +R++  D +   ++V  + +  + + A A+F  + ++    N+V
Sbjct: 144 EEGR----IVHAIAVDKRLE-SDTMVGTSLVNMFGKCKNVDAARAVFDSLPRK----NLV 194

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           TW+ ++A Y+Q     +A+ VFR M   G++P+ VT ++++  CA++ A   G+  H   
Sbjct: 195 TWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVH--- 251

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
               ++  G  P D+ +  A++  Y KC  +D AR +FD++  KN    TW+ ++ +Y+Q
Sbjct: 252 --DDITASGI-PMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKN--TVTWSAILAAYAQ 306

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +A+ L+ +M Q    ++ N  T    L AC+       G      ++R+    ++
Sbjct: 307 NGYETEAIELYHEMVQGG--LEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDF--GVV 362

Query: 497 PFVANC--LIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
           P   +   LID+  RSG +  +  + +++  + +  +W +L+    MHG  D+      +
Sbjct: 363 PVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGA-RIAE 421

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM-----SKEFGISA 597
           +  E    D   +++L    S +G +D+  +   +M     +K+ G+S+
Sbjct: 422 LIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSS 470



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 149/290 (51%), Gaps = 11/290 (3%)

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
            + T V LL  CA   ALL GK  H   +K     DG +  D ++ N LI+MY KC  + 
Sbjct: 23  EISTYVLLLKKCADSKALLEGKRVHSCLVK-----DG-YASDRLIANLLIEMYGKCGGIA 76

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            AR +FD I  KN DV +W  +IG+Y+QNG   +AL LF  M  +   V  N  TL  A+
Sbjct: 77  EARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEG--VIANQVTLINAI 134

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            ACA L +   GR +HA  +  + E     V   L++M+ +  ++D AR VFD+L ++N+
Sbjct: 135 DACASLPSEEEGRIVHAIAVDKRLES-DTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNL 193

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           V+W +++  Y  +    KA   F  M  EG+ PD VTFL ++ AC+      +G    D 
Sbjct: 194 VTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDD 253

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           ++   GI         ++   G+  RLD A  + + +  + T + W A+L
Sbjct: 254 ITAS-GIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNT-VTWSAIL 301



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 201/446 (45%), Gaps = 24/446 (5%)

Query: 42  LLLRQC---KSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPS 96
           LLL++C   K+L +   +H  ++        +  + LI  Y      + A S+  +I   
Sbjct: 29  LLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEK 88

Query: 97  PFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156
              V  WN +I    +  L   A  LF  M   G   ++ T    + AC  LPS   G  
Sbjct: 89  NADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRI 148

Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
           VHA+      +S+  V  +L+ M+ +C  +  AR +FD + +    ++V+WN +VA Y+Q
Sbjct: 149 VHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRK---NLVTWNNMVAVYSQ 205

Query: 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK 276
           +   +  + +F  M  +  VQ D V+ +  + ACA+L   + G+       A  +     
Sbjct: 206 NWQCKKAIQVFRFMDLE-GVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGI----- 259

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
             DV    A++  Y + G  ++A A+F  +     K N VTWSA++A YAQ G+  EA++
Sbjct: 260 PMDVALGTAVMHFYGKCGRLDNARAIFDSLG----KKNTVTWSAILAAYAQNGYETEAIE 315

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
           ++ +M   GLE N +T + LL  C+  G  + G +     I+      G  P     +N 
Sbjct: 316 LYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDF----GVVPVFEHYLN- 370

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           LID+  +   + ++  + +++ P   D + W  ++G+   +G  +    +   +++ D  
Sbjct: 371 LIDLLGRSGQLQLSEDLINSM-PYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPE 429

Query: 457 VKPNAFTLSCALMACARLAALRFGRQ 482
                  LS    +  R+   R  R+
Sbjct: 430 DSGPYILLSNLYSSTGRMDEARRTRK 455


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/552 (39%), Positives = 322/552 (58%), Gaps = 38/552 (6%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N   ++A+I GY       E+ + +  M+  G+ P   T  +L   C +   + LG++ H
Sbjct: 110 NPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIH 169

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN------------ 421
             TI     + G   +DL V N++IDMY KC  ++  R +FD +  ++            
Sbjct: 170 GQTI-----LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYV 224

Query: 422 -----------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464
                            +D+  WTVM+  ++QN    +A+  F +M  Q+  V+ +  TL
Sbjct: 225 KSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKM--QEFGVETDEITL 282

Query: 465 SCALMACARLAALRFGRQIHAYVLRNQYE-MLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
              + ACA+L A ++   I     ++++       V + LIDMYS+ G +  A  VF  +
Sbjct: 283 IGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGM 342

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           K+RNV S++S++ G+ MHG    A   FD+M K  + P+ VTF+ +L ACSH+GMV+QG 
Sbjct: 343 KERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGW 402

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
           + F+ M K +GI   A+HY C+VDLLGRA RL EA EL++ MP+EP   +W ALL  CRI
Sbjct: 403 QIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRI 462

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
           H + ++  +AAN L ELE    G+Y LL+NIYA+ GRW DV+ +R LM+  G++K P  S
Sbjct: 463 HKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFS 522

Query: 704 WVQGKEGTA-TFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           W++ ++G    FF GD THP+S +I + L  L+ R++A GY P  S   +DV+DE+K  +
Sbjct: 523 WIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRI 582

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLALA+G+++T PG+ IRI KNLRIC DCHS I   S I   EII+RD  RFHH
Sbjct: 583 LMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHH 642

Query: 823 FKEGSCTCKGYW 834
           F +G C+C  +W
Sbjct: 643 FHDGICSCGNFW 654



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 56/377 (14%)

Query: 44  LRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPA--LSLLQRIS-PSPF 98
           L  CK+LTQ+  +H +I++  L       + LI      N P     LS+  +++ P+PF
Sbjct: 53  LDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPF 112

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
               +NALIR  +       +   +  M + G  P  +TF  + KACG       G  +H
Sbjct: 113 ---LYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIH 169

Query: 159 A-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
              I   GF  ++ V N+++ MY +C  L   R++FDEM      D++SW  +++AY +S
Sbjct: 170 GQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR---DVISWTELISAYVKS 226

Query: 218 GDAEG-------------------------------GLMLFARMTGDVKVQGDGVSLVNA 246
           G+ E                                 +M F +M  +  V+ D ++L+  
Sbjct: 227 GNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQ-EFGVETDEITLIGV 285

Query: 247 LSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306
           +SACA LG     K    + +  +  E      VV  +A++  YS+ GS  DA+ +F+ M
Sbjct: 286 ISACAQLGA---AKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGM 342

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
           ++     NV ++S++I G+A  G  H+A+ +F +M    ++PN VT + +L+ C+  G +
Sbjct: 343 KER----NVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMV 398

Query: 367 LLGKE-----THCYTIK 378
             G +       CY IK
Sbjct: 399 EQGWQIFELMEKCYGIK 415



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 154/297 (51%), Gaps = 17/297 (5%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +CG +E  +KVF+ M  +DV+SW  +++ Y + G+ E A  LF  +  +    ++V W+ 
Sbjct: 194 KCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVK----DMVAWTV 249

Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
           +++G+AQ     EA+  F +MQ  G+E + +TL+ ++S CA +GA           +   
Sbjct: 250 MVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIR--DVAEK 307

Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
               G H   ++V +ALIDMY+KC SV  A  +F  +  K R+V +++ MI  ++ +G  
Sbjct: 308 SEFGGKH--SVVVGSALIDMYSKCGSVGDAYRVFQGM--KERNVYSYSSMILGFAMHGRV 363

Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
           +DA+ LF +M + +  +KPN  T    L AC+    +  G QI  + L  +   + P   
Sbjct: 364 HDAMKLFDEMVKTE--IKPNRVTFIGVLTACSHAGMVEQGWQI--FELMEKCYGIKPSAD 419

Query: 501 N--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
           +  C++D+  R+G +  A  +   +  + +   W +L+    +H   D A  A + +
Sbjct: 420 HYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHL 476


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/554 (39%), Positives = 323/554 (58%), Gaps = 17/554 (3%)

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +N +V  YS++     A  L       +V    VTW+A+IAG  Q G    AL  F  M+
Sbjct: 45  YNHLVNMYSKLDRPNSAQLLLSLTPNRSV----VTWTALIAGSVQNGRFTSALFHFSNMR 100

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              ++PN  T         S+ + L+GK+ H       L+V      D+ V  +  DMY+
Sbjct: 101 RDSIQPNDFTFPCAFKASGSLRSPLVGKQVH------ALAVKAGQISDVFVGCSAFDMYS 154

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           K    + AR MFD +  +N  +ATW   + +    G  +DAL  F +  ++   ++P  F
Sbjct: 155 KAGLTEEARKMFDEMPERN--IATWNAYLSNSVLEGRYDDALTAFIEARKEG--IEPTDF 210

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            +S  L ACA L+ L  G+ +H   ++      I FV + L+DMY + G I+ A   FD 
Sbjct: 211 MVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNI-FVGSALVDMYGKCGSIEDAERAFDE 269

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR--KEGLAPDGVTFLVLLYACSHSGMVD 580
           + +RN+V+W +++ GY   G  D A   FD+M      +AP+ VTF+ +L ACS +G V+
Sbjct: 270 MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVN 329

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G++ F+SM   +GI   AEHYAC+VDLLGRA  +++A + I+ MP+ PT  +W ALL  
Sbjct: 330 VGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGA 389

Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
            ++    ELG++AA+ L EL+    G++ LLSN++A AGRW++   +R  MK  G+KK  
Sbjct: 390 SKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGA 449

Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
           GCSW+        F   D +H ++ +I  +LA L   ++A GY+P TSFAL D+++EEK 
Sbjct: 450 GCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKA 509

Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
             ++ HSEK+ALA+G+++   G PIRITKNLRICGDCHSAI FIS I+  EII+RD+N F
Sbjct: 510 MEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLF 569

Query: 821 HHFKEGSCTCKGYW 834
           H F++  C+C+ YW
Sbjct: 570 HRFRDNQCSCRDYW 583



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPS----HLIAAYVSHNAPSPALSLLQRIS 94
           + S +  QC  L +    H QII + L +  PS    HL+  Y   + P+ A  LL  ++
Sbjct: 13  VESAVSTQCSRLGRA--AHAQII-KTLDNPLPSFIYNHLVNMYSKLDRPNSA-QLLLSLT 68

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P+  SV  W ALI  +V+     +A   F  M R    P+++TFP   KA G L S   G
Sbjct: 69  PNR-SVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
             VHA+   +G  S+VFV  +   MY++      AR++FDEM +    +I +WN  ++  
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER---NIATWNAYLSNS 184

Query: 215 AQSGDAEGGLMLF--ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
              G  +  L  F  AR  G   ++     + + LSACA L     GK    +     V 
Sbjct: 185 VLEGRYDDALTAFIEARKEG---IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACV- 240

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
               V ++   +A+V  Y + GS EDA   F +M +     N+VTW+A+I GYA +G   
Sbjct: 241 ----VGNIFVGSALVDMYGKCGSIEDAERAFDEMPER----NLVTWNAMIGGYAHQGQAD 292

Query: 333 EALDVFRQMQFCG---LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
            A+ +F +M  CG   + PN VT V +LS C+  G++ +G E       R     G+   
Sbjct: 293 MAVTLFDEMT-CGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEH- 350

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
                  ++D+  +   V+ A   F    P    V+ W  ++G+    G +         
Sbjct: 351 ----YACVVDLLGRAGMVEQA-YQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADN 405

Query: 450 MFQQDKLVKPNAFTLSCALMACAR 473
           +F+ D L   N   LS    A  R
Sbjct: 406 LFELDPLDSGNHVLLSNMFAAAGR 429



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           R GR  HA +++     L  F+ N L++MYS+    ++A+++      R+VV+WT+L+ G
Sbjct: 23  RLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL--KYFDSMSKEFGI 595
              +G    A + F  MR++ + P+  TF     A   SG +   L  K   +++ + G 
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKA---SGSLRSPLVGKQVHALAVKAGQ 139

Query: 596 SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
            +         D+  +A   +EA ++ + MP E     W A L+
Sbjct: 140 ISDVFVGCSAFDMYSKAGLTEEARKMFDEMP-ERNIATWNAYLS 182


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 359/644 (55%), Gaps = 24/644 (3%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN ++   ++    D A RLF  M   G  P+  T    L  C        G+ +H++  
Sbjct: 210 WNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAV 269

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G +  V V N L+AMYA+C  L  A +LF+ M Q    D+V+WN +++   Q+G    
Sbjct: 270 KCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQD---DLVTWNGMISGCVQNGLFVE 326

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
              LF  M      + D ++LV+ L A   L    +GK     E    +       DV  
Sbjct: 327 AFGLFYDMQRS-GARPDSITLVSLLPALTDLNGLKQGK-----EVHGYIVRNCVNMDVFL 380

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
            +A+V  Y +      A  L+   R     ++VV  S +I+GY   G   EAL +FR + 
Sbjct: 381 VSALVDIYFKCRDVRMAQNLYDAAR----AIDVVIGSTMISGYVLNGMSEEALQMFRYLL 436

Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
              ++PN VT+ S+L GCAS+ AL LG++ H Y ++       ++     V +AL+DMYA
Sbjct: 437 EQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLR------NAYERKCYVESALMDMYA 490

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  +D++  +F  ++ K  D  TW  MI S+SQNG   +AL LF QM  +   +K N  
Sbjct: 491 KCGRLDLSHYIFLKMSQK--DEVTWNSMISSFSQNGKPQEALDLFRQMCMEG--IKYNNI 546

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           T+S AL ACA L A+ +G++IH   ++   +  I F  + LIDMY++ G+++ A  VF+ 
Sbjct: 547 TISAALSACASLPAIYYGKEIHGVTIKGPIKADI-FAESALIDMYAKCGNLELALRVFEF 605

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           +  +N VSW S+++ YG HGL  ++      M++EG  PD VTFL L+ AC+H+G+V++G
Sbjct: 606 MPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEG 665

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
           ++ F  M+K++ I+ R EH+AC+VDL  R+ +LD+A++ I  MP +P   IW ALL+ CR
Sbjct: 666 VQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACR 725

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           +H NVEL ++A+  L +L+    G Y L+SNI A AGRW  V+++R LMK   + K PG 
Sbjct: 726 VHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGY 785

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQ 746
           SWV     +  F   D++HP+S+ IY  L  L+Q ++  GYVP+
Sbjct: 786 SWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELREEGYVPR 829



 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 166/555 (29%), Positives = 279/555 (50%), Gaps = 42/555 (7%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRR--GWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           WN LIR          A   +++M        PD +T P+V+K+C  L +   G  VH  
Sbjct: 107 WNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRT 166

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
             + G  ++V+V +AL+ MYA    L  AR  FD + +    D V WN ++    ++GD 
Sbjct: 167 ARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPER---DCVLWNVMMDGCIKAGDV 223

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ-------CGMMEEAKKVFE 273
           +G + LF  M      + +  +L   LS CA+      G Q       CG+  E      
Sbjct: 224 DGAVRLFRNMRAS-GCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPE------ 276

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
                 V   N ++  Y++    +DA+ LF+ M Q+    ++VTW+ +I+G  Q G   E
Sbjct: 277 ------VAVANTLLAMYAKCQCLDDAWRLFELMPQD----DLVTWNGMISGCVQNGLFVE 326

Query: 334 ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393
           A  +F  MQ  G  P+ +TLVSLL     +  L  GKE H Y ++  +++      D+ +
Sbjct: 327 AFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNM------DVFL 380

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
           ++AL+D+Y KC+ V +A+ ++D  A +  DV   + MI  Y  NG + +AL +F  + +Q
Sbjct: 381 VSALVDIYFKCRDVRMAQNLYD--AARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQ 438

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              +KPNA T++  L  CA +AAL  G+QIH YVLRN YE    +V + L+DMY++ G +
Sbjct: 439 --CIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKC-YVESALMDMYAKCGRL 495

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           D +  +F  + Q++ V+W S+++ +  +G   +A   F QM  EG+  + +T    L AC
Sbjct: 496 DLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           +    +  G K    ++ +  I A     + ++D+  +   L+ A+ + E MP +   + 
Sbjct: 556 ASLPAIYYG-KEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMP-DKNEVS 613

Query: 634 WVALLNGCRIHANVE 648
           W ++++    H  V+
Sbjct: 614 WNSIISAYGAHGLVK 628



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 224/480 (46%), Gaps = 25/480 (5%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGF--DSNVFVCNA-LMAMYARCDTLSYARQLFDEMF 197
           VL+ C   P    G  +HA    SG   D N    +  L+ MY        A  +F  + 
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVKVQGDGVSLVNALSACASLGTW 256
           +      + WN ++  +  +G     ++ + +M +       D  +L   + +CA+LG  
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
           S G+       A  +       DV   +A+V  Y+  G   +A   F  + +     + V
Sbjct: 158 SLGRLVHRTARAIGL-----ANDVYVGSALVKMYADAGLLGNARDAFDGIPER----DCV 208

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            W+ ++ G  + G    A+ +FR M+  G EPN  TL   LS CA+   LL G + H   
Sbjct: 209 LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLA 268

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
           +K      G  P ++ V N L+ MYAKC+ +D A  +F+ + P++ D+ TW  MI    Q
Sbjct: 269 VKC-----GLEP-EVAVANTLLAMYAKCQCLDDAWRLFE-LMPQD-DLVTWNGMISGCVQ 320

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496
           NG   +A  LF  M  Q    +P++ TL   L A   L  L+ G+++H Y++RN   M +
Sbjct: 321 NGLFVEAFGLFYDM--QRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDV 378

Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556
            F+ + L+D+Y +  D+  A+ ++D  +  +VV  +++++GY ++G+ ++A   F  + +
Sbjct: 379 -FLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLE 437

Query: 557 EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616
           + + P+ VT   +L  C+    +  G +    + +      +    + ++D+  +  RLD
Sbjct: 438 QCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRN-AYERKCYVESALMDMYAKCGRLD 496


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 374/706 (52%), Gaps = 55/706 (7%)

Query: 155 SSVHAVICSSGFDSN-VFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
           + +H+    +G  SN +F+   ++    +    + YAR++FDE+ QP +     WNT++ 
Sbjct: 52  NQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSV---FIWNTMIK 108

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
            Y++   +E G+ L+  M     ++ DG +    L           GK          + 
Sbjct: 109 GYSRINCSESGVSLYKLMLVH-NIKPDGFTFPFLLKGFTKDMALKYGKV---------LL 158

Query: 273 ERMKVKDVVSWNAMV-TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG 331
               +   +  N  V  G+  + S        +K+        VVTW+ V++GY +    
Sbjct: 159 NHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRY 218

Query: 332 HEALDVFRQMQF-CG-LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD 389
            E+  +F +M+  C  + PN VTLV +LS C+ +  L+ GK  +   IK     +G    
Sbjct: 219 EESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK-----EGIVEP 273

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKN---------------------------- 421
           +L++ NALIDM+A C  +D AR +FD +  ++                            
Sbjct: 274 NLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMP 333

Query: 422 -RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
            RD  +WT MI  Y +     + L LF  M  Q   VKP+ FT+   L ACA L AL  G
Sbjct: 334 ERDYVSWTAMIDGYLRMNRFKEVLTLFRDM--QMSNVKPDEFTMVSILTACAHLGALELG 391

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
                Y+ +N+ +    F+ N LIDMY + G+++ A+ +F+ +++++  +WT+++ G   
Sbjct: 392 EWAKTYIDKNKIKN-DTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLAN 450

Query: 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600
           +G G++A   F  M +  + PD +T++ ++ AC+H G+V +G  +F +M+ + GI     
Sbjct: 451 NGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLT 510

Query: 601 HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660
           HY C+VDLLGRA  L EA+E+I  MP++P  I+W +LL  CR+H NV+L E+AAN +LEL
Sbjct: 511 HYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILEL 570

Query: 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRT 720
           E E    Y LL NIYA   +WK++  +R +M   G+KK PGCS ++       F  GD++
Sbjct: 571 EPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKS 630

Query: 721 HPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTA 780
           HPQS++IY  L  + Q +   GY P TS    DV +E+K   L+ HSEKLA+AY ++++ 
Sbjct: 631 HPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSG 690

Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEG 826
            G  IRI KNLR+C DCH     +S + N E+I+RD  RFHHF+ G
Sbjct: 691 KGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 171/592 (28%), Positives = 281/592 (47%), Gaps = 68/592 (11%)

Query: 17  LTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLI 74
           L L  + +N  L S   +P       LL  C ++ ++  IH Q I   L+  H+  + +I
Sbjct: 20  LFLKRMISNTPLHSFVKSPIS-----LLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVI 74

Query: 75  AAYVSHNAPSP--ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
               +  +     A  +   I P P SVF WN +I+   R+   ++   L+  M+     
Sbjct: 75  IFCCTKESGDVYYARKVFDEI-PQP-SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIK 132

Query: 133 PDEYTFPFVLKACGELPSSRCGSSV--HAVICSSGF-DSNVFVCNALMAMYARCDTLSYA 189
           PD +TFPF+LK   +  + + G  +  HAVI   GF DSN+FV    + +++ C  ++YA
Sbjct: 133 PDGFTFPFLLKGFTKDMALKYGKVLLNHAVI--HGFLDSNLFVQKGFIHLFSLCGLVNYA 190

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK-VQGDGVSLVNALS 248
           R++FD        ++V+WN +++ Y +    E    LF  M    + V  + V+LV  LS
Sbjct: 191 RKIFD---MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLS 247

Query: 249 ACASLGTWSRGK---------------------------QCGMMEEAKKVFERMKVKDVV 281
           AC+ L     GK                            CG M+ A+ VF+ MK +DV+
Sbjct: 248 ACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVI 307

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SW ++VTG++     + A   F +M +     + V+W+A+I GY +     E L +FR M
Sbjct: 308 SWTSIVTGFANTCRIDLARKYFDQMPER----DYVSWTAMIDGYLRMNRFKEVLTLFRDM 363

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
           Q   ++P+  T+VS+L+ CA +GAL LG+    Y  K  +       +D  + NALIDMY
Sbjct: 364 QMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIK------NDTFIGNALIDMY 417

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
            KC +V+ A+ +F+ +  K  D  TWT MI   + NG   +AL +F  M +    V P+ 
Sbjct: 418 FKCGNVEKAKKIFNEMQKK--DKFTWTAMIVGLANNGHGEEALTMFSYMLEAS--VTPDE 473

Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVV 519
            T    + AC  +  +  G+  H +        + P + +  C++D+  R+G +  A  V
Sbjct: 474 ITYIGVMCACTHVGLVAKGK--HFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEV 531

Query: 520 FDNLKQR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
             N+  + N + W SL+    +H     A  A +++ +  L P+     VLL
Sbjct: 532 IMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE--LEPENGAVYVLL 581



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 170/414 (41%), Gaps = 49/414 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+I   +R+        LF  M      PDE+T   +L AC  L +   G      I 
Sbjct: 340 WTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYID 399

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +   ++ F+ NAL+ MY +C  +  A+++F+EM +    D  +W  ++   A +G  E 
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKK---DKFTWTAMIVGLANNGHGEE 456

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            L +F+ M  +  V  D ++ +  + AC  +G  ++GK           F  M V+    
Sbjct: 457 ALTMFSYML-EASVTPDEITYIGVMCACTHVGLVAKGKH---------FFSNMAVQHGIK 506

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            ++  +  MV    R G  ++A  +   M    VK N + W +++   A R H +  L  
Sbjct: 507 PNLTHYGCMVDLLGRAGHLKEALEVIMNMP---VKPNSIVWGSLLG--ACRVHKNVQLAE 561

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
               +   LEP    +  LL  C    A    K  H   +++++   G            
Sbjct: 562 MAANEILELEPENGAVYVLL--CNIYAACKKWKNLH--NVRKMMMERG------------ 605

Query: 398 IDMYAKCKSVDVARVMFDAIA-----PKNRDV-ATWTVMIGSYSQNGGANDALALFPQMF 451
           I     C  +++  ++++ +A     P+++++ A    M    S  G + D   +F  + 
Sbjct: 606 IKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVG 665

Query: 452 QQDK----LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           ++DK     +      ++ AL++  +   +R  + +   V  +   M++  V N
Sbjct: 666 EEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYN 719


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 352/593 (59%), Gaps = 22/593 (3%)

Query: 243 LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFA 301
            +  L  CA  G     K C      K +  RM+++ DV   N ++  YS+ G  E A  
Sbjct: 66  FIEILQLCARNGAVMEAKAC----HGKTM--RMELQGDVTLSNVLINAYSKCGFVELARQ 119

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  M    ++ ++V+W+ +I  Y +     EALD+F +M+  G + +  T+ S+LS C 
Sbjct: 120 VFDGM----LERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACG 175

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
           +    L  K+ HC ++K  L ++      L V  AL+D+YAKC  ++ A  +F+++  ++
Sbjct: 176 ANCDALECKKLHCLSMKTSLDLN------LYVGTALLDLYAKCGMINDAVQVFESM--QD 227

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           +   TW+ M+  Y Q+    +AL L+ +   Q   ++ N FTLS  + AC+ LAAL  G+
Sbjct: 228 KSSVTWSSMVAGYVQSKNYEEALLLYRR--AQRMSLEQNQFTLSSVICACSNLAALIEGK 285

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           Q+HA + ++ +   + FVA+  +DMY++ G +  + ++F  ++++N+  W ++++G+  H
Sbjct: 286 QMHAVIRKSGFGSNV-FVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKH 344

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
               +    F++M+++G+ P+ VTF  LL  C H+G+V++G ++F  M   +G+S    H
Sbjct: 345 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 404

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           Y+C+VD+LGRA  L EA ELI+ +P EPT  IW +LL  CR+  N+EL E+AA +L ELE
Sbjct: 405 YSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELE 464

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
            E  G++ LLSNIYA   +W+++A+ R L++   VKK  G SW+  K+    F VG+ +H
Sbjct: 465 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSH 524

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
           P+ ++I  +L  LV  ++  GY P     LHDV+  +K +LL +HSEKLAL +G++    
Sbjct: 525 PRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPE 584

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G+ +RI KNLRIC DCH  +   SM     II+RD+NRFHHF +G C+C  +W
Sbjct: 585 GSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 141/273 (51%), Gaps = 15/273 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN +I    R R+   A  +F +M   G+   E+T   VL ACG    +     +H
Sbjct: 128 SLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLH 187

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +   +  D N++V  AL+ +YA+C  ++ A Q+F+ M        V+W+++VA Y QS 
Sbjct: 188 CLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKS---SVTWSSMVAGYVQSK 244

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV- 277
           + E  L+L+ R    + ++ +  +L + + AC++L     GKQ         V  +    
Sbjct: 245 NYEEALLLYRR-AQRMSLEQNQFTLSSVICACSNLAALIEGKQ------MHAVIRKSGFG 297

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +V   ++ V  Y++ GS  +++ +F +++++N++L    W+ +I+G+A+     E + +
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIEL----WNTIISGFAKHARPKEVMIL 353

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           F +MQ  G+ PN VT  SLLS C   G +  G+
Sbjct: 354 FEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGR 386



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 191/441 (43%), Gaps = 86/441 (19%)

Query: 130 GWHPDEYT------FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
           G + DE+       F  +L+ C    +     + H          +V + N L+  Y++C
Sbjct: 52  GRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKC 111

Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
             +  ARQ+FD M +     +VSWNT++  Y ++      L +F  M  +   +    ++
Sbjct: 112 GFVELARQVFDGMLERS---LVSWNTMIGLYTRNRMESEALDIFWEMRNE-GFKFSEFTI 167

Query: 244 VNALSACAS------------------------LGT--WSRGKQCGMMEEAKKVFERMKV 277
            + LSAC +                        +GT       +CGM+ +A +VFE M+ 
Sbjct: 168 SSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQD 227

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           K  V+W++MV GY +  ++E+A  L+++                    AQR         
Sbjct: 228 KSSVTWSSMVAGYVQSKNYEEALLLYRR--------------------AQR--------- 258

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
                   LE N  TL S++  C+++ AL+ GK+ H    K           ++ V ++ 
Sbjct: 259 ------MSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRK------SGFGSNVFVASSA 306

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           +DMYAKC S+  + ++F  +  KN  +  W  +I  ++++    + + LF +M QQD + 
Sbjct: 307 VDMYAKCGSLRESYIIFSEVQEKN--IELWNTIISGFAKHARPKEVMILFEKM-QQDGM- 362

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA--NCLIDMYSRSGDIDT 515
            PN  T S  L  C     +  GR+    ++R  Y  L P V   +C++D+  R+G +  
Sbjct: 363 HPNEVTFSSLLSVCGHTGLVEEGRRFFK-LMRTTYG-LSPNVVHYSCMVDILGRAGLLSE 420

Query: 516 ARVVFDNLKQRNVVS-WTSLM 535
           A  +  ++      S W SL+
Sbjct: 421 AYELIKSIPFEPTASIWGSLL 441



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 18/209 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W++++   V+ +  + A  L+ +  R     +++T   V+ AC  L +   G  +HAVI 
Sbjct: 233 WSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIR 292

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGF SNVFV ++ + MYA+C +L  +  +F E+ +    +I  WNTI++ +A+    + 
Sbjct: 293 KSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK---NIELWNTIISGFAKHARPKE 349

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            ++LF +M  D  +  + V+  + LS C            G++EE ++ F+ M+      
Sbjct: 350 VMILFEKMQQD-GMHPNEVTFSSLLSVCG---------HTGLVEEGRRFFKLMRTTYGLS 399

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
            +VV ++ MV    R G   +A+ L K +
Sbjct: 400 PNVVHYSCMVDILGRAGLLSEAYELIKSI 428


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 313/546 (57%), Gaps = 32/546 (5%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V +++ I  ++ RG    AL +  +M   GL P   TL S L  C     L LG+  H
Sbjct: 97  TTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALH 153

Query: 374 CYTIKRVLSVDG------------------------SHPDDLMV-INALIDMYAKCKSVD 408
            Y  K  L+ D                           PD  +V + A++  YAK  ++D
Sbjct: 154 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 213

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            AR +FD +  K  D   W  MI  Y+Q+G  N+AL LF  M +    V P+   +  AL
Sbjct: 214 DARELFDGMPSK--DFICWNAMIDGYTQHGRPNEALRLFRWMLRSG--VDPDEVAIILAL 269

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            A A+L     GR +H+YV  ++   L   V   LIDMY + G ++ A  VF+++  +++
Sbjct: 270 SAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDI 329

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           V W +++ GY MHG   KA   F Q+R +GL P  +TF+ LL ACSHSG+VD+G ++F S
Sbjct: 330 VVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQS 389

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M +E+ I  + EHY C+VDLLGRA  ++EA  L++ M + P  ++WV+LL  CR+H N+ 
Sbjct: 390 MEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 449

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           LG+  A+ L+       G Y LLSNIYA  G W++VAR+RS+MK +G++K PGCS ++  
Sbjct: 450 LGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVG 509

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F  GD +HP++ +IY +L  +   +K  G+VPQT   LHD+D+  K   L  HSE
Sbjct: 510 RKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSE 569

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLA+A+G+++TAPG  I+I KNLR C DCH+ +  IS I   +I+ RD NRFHHF +GSC
Sbjct: 570 KLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSC 629

Query: 829 TCKGYW 834
           TC  YW
Sbjct: 630 TCGDYW 635



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
           AY + +     ++LL R++P P +VF+ +A+   + R  L   A  L  +M+ RG  P  
Sbjct: 76  AYAASDRLDLTVTLL-RLTPDPTTVFYTSAIHAHSSR-GLHLAALALLSEMLGRGLIPTS 133

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +T    L AC  L     G ++HA         + +V  AL+ MYAR      AR LFDE
Sbjct: 134 HTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE 190

Query: 196 MFQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLF 227
           M  P +                             D + WN ++  Y Q G     L LF
Sbjct: 191 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 250

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
             M     V  D V+++ ALSA A LGT   G+    +    K   R+++   V   A++
Sbjct: 251 RWMLRS-GVDPDEVAIILALSAVAQLGTAESGR---WLHSYVKNSRRVQLNARVG-TALI 305

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
             Y + GS EDA ++F  +  +++    V W+A+I GYA  G   +AL++F Q++  GL 
Sbjct: 306 DMYCKCGSLEDAVSVFNSIGDKDI----VVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 361

Query: 348 PNVVTLVSLLSGCASVG 364
           P  +T + LL+ C+  G
Sbjct: 362 PTDITFIGLLNACSHSG 378



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 32/277 (11%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           VP + ++  Y    A   A  L   +    F    WNA+I    +   P+ A RLF  M+
Sbjct: 197 VPVTAMLTCYAKMGALDDARELFDGMPSKDF--ICWNAMIDGYTQHGRPNEALRLFRWML 254

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS-GFDSNVFVCNALMAMYARCDTL 186
           R G  PDE      L A  +L ++  G  +H+ + +S     N  V  AL+ MY +C +L
Sbjct: 255 RSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSL 314

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSL 243
             A  +F+ +   G  DIV WN ++  YA  GD+   L +F+++    + QG     ++ 
Sbjct: 315 EDAVSVFNSI---GDKDIVVWNAMINGYAMHGDSRKALEMFSQL----RSQGLWPTDITF 367

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFED 298
           +  L+AC+           G+++E  + F+ M+     V  +  +  MV    R G  E+
Sbjct: 368 IGLLNACS---------HSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 418

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           AF L + M    +  + V W +++A  A R H + AL
Sbjct: 419 AFHLVQSM---TIAPDTVMWVSLLA--ACRLHKNMAL 450


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 313/546 (57%), Gaps = 32/546 (5%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             V +++ I  ++ RG    AL +  +M   GL P   TL S L  C     L LG+  H
Sbjct: 96  TTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALH 152

Query: 374 CYTIKRVLSVDG------------------------SHPDDLMV-INALIDMYAKCKSVD 408
            Y  K  L+ D                           PD  +V + A++  YAK  ++D
Sbjct: 153 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 212

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468
            AR +FD +  K  D   W  MI  Y+Q+G  N+AL LF  M +    V P+   +  AL
Sbjct: 213 DARELFDGMPSK--DFICWNAMIDGYTQHGRPNEALRLFRWMLRSG--VDPDEVAIILAL 268

Query: 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV 528
            A A+L     GR +H+YV  ++   L   V   LIDMY + G ++ A  VF+++  +++
Sbjct: 269 SAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDI 328

Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588
           V W +++ GY MHG   KA   F Q+R +GL P  +TF+ LL ACSHSG+VD+G ++F S
Sbjct: 329 VVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQS 388

Query: 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVE 648
           M +E+ I  + EHY C+VDLLGRA  ++EA  L++ M + P  ++WV+LL  CR+H N+ 
Sbjct: 389 MEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 448

Query: 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708
           LG+  A+ L+       G Y LLSNIYA  G W++VAR+RS+MK +G++K PGCS ++  
Sbjct: 449 LGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVG 508

Query: 709 EGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSE 768
                F  GD +HP++ +IY +L  +   +K  G+VPQT   LHD+D+  K   L  HSE
Sbjct: 509 RKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSE 568

Query: 769 KLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSC 828
           KLA+A+G+++TAPG  I+I KNLR C DCH+ +  IS I   +I+ RD NRFHHF +GSC
Sbjct: 569 KLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSC 628

Query: 829 TCKGYW 834
           TC  YW
Sbjct: 629 TCGDYW 634



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 76  AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
           AY + +     ++LL R++P P +VF+ +A+   + R  L   A  L  +M+ RG  P  
Sbjct: 75  AYAASDRLDLTVTLL-RLTPDPTTVFYTSAIHAHSSR-GLHLAALALLSEMLGRGLIPTS 132

Query: 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE 195
           +T    L AC  L     G ++HA         + +V  AL+ MYAR      AR LFDE
Sbjct: 133 HTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE 189

Query: 196 MFQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLMLF 227
           M  P +                             D + WN ++  Y Q G     L LF
Sbjct: 190 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 249

Query: 228 ARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
             M     V  D V+++ ALSA A LGT   G+    +    K   R+++   V   A++
Sbjct: 250 RWMLRS-GVDPDEVAIILALSAVAQLGTAESGR---WLHSYVKNSRRVQLNARVG-TALI 304

Query: 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347
             Y + GS EDA ++F  +  +++    V W+A+I GYA  G   +AL++F Q++  GL 
Sbjct: 305 DMYCKCGSLEDAVSVFNSIGDKDI----VVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 360

Query: 348 PNVVTLVSLLSGCASVG 364
           P  +T + LL+ C+  G
Sbjct: 361 PTDITFIGLLNACSHSG 377



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 32/277 (11%)

Query: 68  VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
           VP + ++  Y    A   A  L   +    F    WNA+I    +   P+ A RLF  M+
Sbjct: 196 VPVTAMLTCYAKMGALDDARELFDGMPSKDF--ICWNAMIDGYTQHGRPNEALRLFRWML 253

Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS-GFDSNVFVCNALMAMYARCDTL 186
           R G  PDE      L A  +L ++  G  +H+ + +S     N  V  AL+ MY +C +L
Sbjct: 254 RSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSL 313

Query: 187 SYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSL 243
             A  +F+ +   G  DIV WN ++  YA  GD+   L +F+++    + QG     ++ 
Sbjct: 314 EDAVSVFNSI---GDKDIVVWNAMINGYAMHGDSRKALEMFSQL----RSQGLWPTDITF 366

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMK-----VKDVVSWNAMVTGYSRIGSFED 298
           +  L+AC+           G+++E  + F+ M+     V  +  +  MV    R G  E+
Sbjct: 367 IGLLNACS---------HSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 417

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
           AF L + M    +  + V W +++A  A R H + AL
Sbjct: 418 AFHLVQSM---TIAPDTVMWVSLLA--ACRLHKNMAL 449


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 335/556 (60%), Gaps = 15/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           DV   N ++  YS+ G  E A  +F  M    ++ ++V+W+ +I  Y +     EALD+F
Sbjct: 95  DVTLLNVLINAYSKCGFVELARQVFDGM----LERSLVSWNTMIGLYTRNRMESEALDIF 150

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            +M+  G + +  T+ S+LS C      L  K+ HC ++K  + ++      L V  AL+
Sbjct: 151 LEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLN------LYVGTALL 204

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D+YAKC  +  A  +F+++  +++   TW+ M+  Y QN    +AL L+ +   Q   ++
Sbjct: 205 DLYAKCGMIKDAVQVFESM--QDKSSVTWSSMVAGYVQNKNYEEALLLYRR--AQRMSLE 260

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            N FTLS  + AC+ LAAL  G+Q+HA + ++ +   + FVA+  +DMY++ G +  + +
Sbjct: 261 QNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNV-FVASSAVDMYAKCGSLRESYI 319

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           +F  ++++N+  W ++++G+  H    +    F++M+++G+ P+ VTF  LL  C H+G+
Sbjct: 320 IFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGL 379

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G ++F  M   +G+S    HY+C+VD+LGRA  L EA ELI+ +P +PT  IW +LL
Sbjct: 380 VEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 439

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CR++ N+EL E+AA +L ELE E  G++ LLSNIYA   +W+++A+ R L++   VKK
Sbjct: 440 ASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKK 499

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             G SW+  K+   TF VG+  HP+ ++I   L  LV + +  GY P     LHDV+  +
Sbjct: 500 VRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGK 559

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K +LL +HSEKLAL +G++     +P+RI KNLRIC DCH  +   SM     II+RD N
Sbjct: 560 KEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVN 619

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHF +G C+C  +W
Sbjct: 620 RFHHFSDGHCSCGDFW 635



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 210/438 (47%), Gaps = 40/438 (9%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
           +L+ C    +     + H  I     + +V + N L+  Y++C  +  ARQ+FD M +  
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260
              +VSWNT++  Y ++      L +F  M  +   +    ++ + LSAC        G 
Sbjct: 127 ---LVSWNTMIGLYTRNRMESEALDIFLEMRNE-GFKFSEFTISSVLSAC--------GV 174

Query: 261 QCGMMEEAKKVFERMKVKDVVSWN-----AMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
            C  +E  K     + VK  +  N     A++  Y++ G  +DA  +F+ M+ +    + 
Sbjct: 175 NCDALECKK--LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDK----SS 228

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           VTWS+++AGY Q  +  EAL ++R+ Q   LE N  TL S++  C+++ AL+ GK+ H  
Sbjct: 229 VTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 288

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
             K           ++ V ++ +DMYAKC S+  + ++F  +  KN ++  W  +I  ++
Sbjct: 289 ICK------SGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL--WNTIISGFA 340

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           ++    + + LF +M QQD +  PN  T S  L  C     +  GR+    ++R  Y  L
Sbjct: 341 KHARPKEVMILFEKM-QQDGM-HPNEVTFSSLLSVCGHTGLVEEGRRFFK-LMRTTYG-L 396

Query: 496 IPFVAN--CLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYGMHGLGDKAHWAFD 552
            P V +  C++D+  R+G +  A  +  ++      S W SL+    ++   + A  A +
Sbjct: 397 SPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAE 456

Query: 553 QMRKEGLAPDGVTFLVLL 570
           ++ +  L P+     VLL
Sbjct: 457 KLFE--LEPENAGNHVLL 472



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 142/272 (52%), Gaps = 13/272 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN +I    R R+   A  +FL+M   G+   E+T   VL ACG    +     +H
Sbjct: 126 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 185

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
            +   +  D N++V  AL+ +YA+C  +  A Q+F+ M        V+W+++VA Y Q+ 
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKS---SVTWSSMVAGYVQNK 242

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           + E  L+L+ R    + ++ +  +L + + AC++L     GKQ   +     + +     
Sbjct: 243 NYEEALLLYRR-AQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV-----ICKSGFGS 296

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           +V   ++ V  Y++ GS  +++ +F +++++N++L    W+ +I+G+A+     E + +F
Sbjct: 297 NVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL----WNTIISGFAKHARPKEVMILF 352

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
            +MQ  G+ PN VT  SLLS C   G +  G+
Sbjct: 353 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGR 384



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 18/209 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W++++   V+ +  + A  L+ +  R     +++T   V+ AC  L +   G  +HAVIC
Sbjct: 231 WSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIC 290

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            SGF SNVFV ++ + MYA+C +L  +  +F E+ +    ++  WNTI++ +A+    + 
Sbjct: 291 KSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK---NLELWNTIISGFAKHARPKE 347

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            ++LF +M  D  +  + V+  + LS C            G++EE ++ F+ M+      
Sbjct: 348 VMILFEKMQQD-GMHPNEVTFSSLLSVCG---------HTGLVEEGRRFFKLMRTTYGLS 397

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
            +VV ++ MV    R G   +A+ L K +
Sbjct: 398 PNVVHYSCMVDILGRAGLLSEAYELIKSI 426


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 379/697 (54%), Gaps = 28/697 (4%)

Query: 141 VLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           +L++CG     R G  +HA ++ S    ++ F+ N L+ MY+ C  L+ A +LF  M + 
Sbjct: 176 LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 235

Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
              + VSW T+V+  +Q+      LM    +     ++  GV+      + A+    + G
Sbjct: 236 ---NAVSWTTLVSGLSQN------LMHADALAAFAAMRRAGVAPTRFALSSAARAAAALG 286

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS 319
                             +  V+ N +   YS+ G   +A  +F +M Q++     V W+
Sbjct: 287 APLRARSCTASASVGFDTELFVASN-LADMYSKCGLLSEACRVFDQMPQKDA----VAWT 341

Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           A+I GYA+ G    A+  FR M+  GL   +     S+LS    +    L K  HC   K
Sbjct: 342 AMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTK 401

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVA-RVMFDAIAPKNRDVATWTVMIGSYSQN 437
               ++      + V NALIDMYAK   V+ A RV+   I P   +V + T MI  Y + 
Sbjct: 402 AGFELE------VAVRNALIDMYAKSMDVESASRVL--KIDPGGWNVVSGTSMIDGYIET 453

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
               +AL ++ ++ +Q   V+PN FT S  +  CA  A L  G Q+HA V++    +   
Sbjct: 454 DCVEEALVIYVELRRQG--VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDL-IRDS 510

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           FV + L+DMY + G I  +  +F+ ++ R  ++W +++  +  HG G +A  AFD+M   
Sbjct: 511 FVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYS 570

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ P+ + F+ LL ACSH+G+VD+GLKYF SM +  GI  + EHY+CI+D  GRA RLDE
Sbjct: 571 GIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDE 630

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           A + I  MP++P    W +LL  CR+  + ELGE+AA  L++LE    G +  LS IYA+
Sbjct: 631 AYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYAS 690

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQR 737
            G+W+DV  +R LM+ + +KK PG SWV   + T  F   D +HPQ + IYE L  L  R
Sbjct: 691 LGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTR 750

Query: 738 IKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDC 797
           IK  GY+P TSF   +++D  K  +L  HSE++A+A+ +++     PI + KNLRIC DC
Sbjct: 751 IKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDC 810

Query: 798 HSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           H+A  FI  +   +II+RD++RFHHF  G C+C  YW
Sbjct: 811 HTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 137/544 (25%), Positives = 235/544 (43%), Gaps = 65/544 (11%)

Query: 141 VLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
           +L++CG     R G  +HA ++ S    ++ F+ N L+ MY+ C  L+ A +LF  M + 
Sbjct: 26  LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 85

Query: 200 GICDIVSWNTIVAAYAQ----------------SGDAEGGLMLFARM------------- 230
              + VSW T+V+  +Q                +G A   L+   +              
Sbjct: 86  ---NAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAAS 142

Query: 231 ------TGDVKVQGDGVSLVNALSACASLGTWSRGKQC--------GMMEEAKKVFERMK 276
                 T  VK  G  +    A +A  ++   S  + C        G +  A+ V     
Sbjct: 143 HCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAA 202

Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
                  N ++T YS       A  LF  M +     N V+W+ +++G +Q     +AL 
Sbjct: 203 AASTFLANHLITMYSHCADLASALRLFAAMPRR----NAVSWTTLVSGLSQNLMHADALA 258

Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
            F  M+  G+ P    L S     A++GA L  +           S       +L V + 
Sbjct: 259 AFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSC-------TASASVGFDTELFVASN 311

Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
           L DMY+KC  +  A  +FD +  K  D   WT MI  Y++NG    A+  F  M +++ L
Sbjct: 312 LADMYSKCGLLSEACRVFDQMPQK--DAVAWTAMIDGYAKNGSLEAAVLSFRDM-KREGL 368

Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
           V  +       L A   L      + IH  V +  +E+ +  V N LIDMY++S D+++A
Sbjct: 369 VGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA-VRNALIDMYAKSMDVESA 427

Query: 517 -RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
            RV+  +    NVVS TS++ GY      ++A   + ++R++G+ P+  TF  ++  C+ 
Sbjct: 428 SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAM 487

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
             +++QG +    + K   I       + +VD+ G+   +  +++L   +    T I W 
Sbjct: 488 QALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLFNEIEYR-TDIAWN 545

Query: 636 ALLN 639
           A++N
Sbjct: 546 AVIN 549



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 19/337 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVHAVI 161
           W A+I    +    + A   F  M R G    D++ F  VL A G L       S+H  +
Sbjct: 340 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 399

Query: 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
             +GF+  V V NAL+ MYA+   +  A ++      PG  ++VS  +++  Y ++   E
Sbjct: 400 TKAGFELEVAVRNALIDMYAKSMDVESASRVLK--IDPGGWNVVSGTSMIDGYIETDCVE 457

Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
             L+++  +     V+ +  +  + +  CA      +G Q        +V +   ++D  
Sbjct: 458 EALVIYVELRRQ-GVEPNEFTFSSMIKGCAMQALLEQGAQL-----HAQVIKTDLIRDSF 511

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
             + +V  Y + G    +  LF ++         + W+AVI  +AQ GHG EA+  F +M
Sbjct: 512 VGSTLVDMYGKCGLISLSMQLFNEIEYR----TDIAWNAVINVFAQHGHGREAIQAFDRM 567

Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
            + G+ PN +  VSLL+ C+  G +  G + + Y++K    ++          + +ID Y
Sbjct: 568 IYSGIRPNHIAFVSLLTACSHAGLVDEGLK-YFYSMKEAHGIEPKEEH----YSCIIDTY 622

Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
            +   +D A   F +  P   +   W  ++G+    G
Sbjct: 623 GRAGRLDEA-YKFISEMPIKPNAYGWCSLLGACRMRG 658



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 26/284 (9%)

Query: 88  SLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
           S + +I P  ++V    ++I   +     + A  +++++ R+G  P+E+TF  ++K C  
Sbjct: 428 SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAM 487

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDIVS 206
                 G+ +HA +  +    + FV + L+ MY +C  +S + QLF+E+ ++  I    +
Sbjct: 488 QALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDI----A 543

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           WN ++  +AQ G     +  F RM     ++ + ++ V+ L+AC+           G+++
Sbjct: 544 WNAVINVFAQHGHGREAIQAFDRMIYS-GIRPNHIAFVSLLTACS---------HAGLVD 593

Query: 267 EAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           E  K F  MK    +      ++ ++  Y R G  ++A+    +M    +K N   W ++
Sbjct: 594 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM---PIKPNAYGWCSL 650

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEP-NVVTLVSLLSGCASVG 364
           +   A R  G + L          LEP N    VSL    AS+G
Sbjct: 651 LG--ACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLG 692



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 141/351 (40%), Gaps = 56/351 (15%)

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
             V L SLL  C   G L  G+  H       L + G+      + N LI MY+ C  + 
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHAR-----LVLSGAAAASTFLANHLITMYSHCADLA 73

Query: 409 VARVMFDAIAPKNRDVATWTVMIGSYSQN---------------GGANDALALFPQMFQQ 453
            A  +F A+ P+ R+  +WT ++   SQN                G      ++   F  
Sbjct: 74  SALRLFAAM-PR-RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHN 131

Query: 454 -------------------------DKLVKPNA------FTLSCALMACARLAALRFGRQ 482
                                     +L +P A        L+  L +C R   LR GR 
Sbjct: 132 TLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRL 191

Query: 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG 542
           +HA ++ +       F+AN LI MYS   D+ +A  +F  + +RN VSWT+L++G   + 
Sbjct: 192 LHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNL 251

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602
           +   A  AF  MR+ G+AP    F +   A + + +         + S   G        
Sbjct: 252 MHADALAAFAAMRRAGVAP--TRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVA 309

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           + + D+  +   L EA  + + MP +   + W A+++G   + ++E   L+
Sbjct: 310 SNLADMYSKCGLLSEACRVFDQMP-QKDAVAWTAMIDGYAKNGSLEAAVLS 359


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/522 (40%), Positives = 313/522 (59%), Gaps = 11/522 (2%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           +  TWS+VI+ +AQ      +L+ FR M   G+ P+     S    C  + +L + K  H
Sbjct: 85  SATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLH 144

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           C+ +K    +D      + V +++IDMYAKC  +  A  +FD +  +N  V +W+ +I  
Sbjct: 145 CFALKTAYHLD------IFVGSSVIDMYAKCGDICYAHNVFDEMPYRN--VVSWSGLIYG 196

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           Y Q G  +++L LF +   +++    N FTLS  L  C     L+ GR IH    +  ++
Sbjct: 197 YVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFD 256

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
               FVA+ LI +YS+ G ++ A  VF+ +  RN+  W +++     H   DK    FD+
Sbjct: 257 SSC-FVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDK 315

Query: 554 MRK-EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
           M+   G+  + +TFL +LYACSH+G+V++G  YF+ M K++GI    +HY+ +VDLLGRA
Sbjct: 316 MKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRA 374

Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
            +L++AV+LIE MPMEPT  +W ALL GCR+H N +L    A+R+ EL S   G + +LS
Sbjct: 375 GKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLS 434

Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
           N YA AGRW++ A+ R +M+  G+KK  G SWV+      TF  GDR+H +S +IY+ L 
Sbjct: 435 NAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLD 494

Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
            L + +   GYV  TSF L +VD EEK   +  HSE+LA+A+G +T   G PIR+ KNLR
Sbjct: 495 ELGEEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLR 554

Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +CGDCH+AI FIS      II+RD+NRFH F++G CTC  YW
Sbjct: 555 VCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 161/351 (45%), Gaps = 38/351 (10%)

Query: 40  TSLLLRQCKSLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSP 97
           T L L   +SL +   +H  II   L  +P    HLI  Y   + P  +L +    SP  
Sbjct: 26  TLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHD-SPHK 84

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
            S   W+++I    +  LP  +   F  M+R+G  PD++ FP   K+CG L S      +
Sbjct: 85  -SATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKML 143

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H     + +  ++FV ++++ MYA+C  + YA  +FDEM      ++VSW+ ++  Y Q 
Sbjct: 144 HCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEM---PYRNVVSWSGLIYGYVQL 200

Query: 218 GDAEGGLMLFARMTGDVKVQG-DGVSLVNALSACASLGTWSRGK---------------- 260
           G+ +  L LF R   + + +G +  +L + L  C        G+                
Sbjct: 201 GEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCF 260

Query: 261 ----------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ-E 309
                     +CG++EEA  VFE + V+++  WNAM+   ++    +  F LF KM+   
Sbjct: 261 VASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVG 320

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP---NVVTLVSLL 357
            +K N +T+  V+   +  G   +    F  M+  G+EP   +  T+V LL
Sbjct: 321 GMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLL 371



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480
           ++   TW+ +I S++QN     +L  F  M +Q   V P+      A  +C  L++L   
Sbjct: 83  HKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQG--VPPDDHIFPSATKSCGILSSLPVA 140

Query: 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGM 540
           + +H + L+  Y + I FV + +IDMY++ GDI  A  VFD +  RNVVSW+ L+ GY  
Sbjct: 141 KMLHCFALKTAYHLDI-FVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQ 199

Query: 541 HGLGDKAHWAFDQ--MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
            G  D++   F +  + +E    +  T   +L  C  S ++  G +    +S +    + 
Sbjct: 200 LGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMG-RLIHGLSFKTSFDSS 258

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
               + ++ L  +   ++EA ++ E + +     +W A+L  C  HA+ +      +++ 
Sbjct: 259 CFVASSLISLYSKCGVVEEAYDVFEEVTVRNLG-MWNAMLIACAQHAHTDKTFELFDKMK 317

Query: 659 ELESEKDGSYTLLSNIYA--NAGRWKDVARIRSLMKHTGVKKRPG 701
            +   K    T L  +YA  +AG  +       LMK  G++  PG
Sbjct: 318 SVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIE--PG 360



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 104/234 (44%), Gaps = 22/234 (9%)

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506
            P  F Q  L +     L   L++     +L  G Q+HA++++   +  IP +++ LI+ 
Sbjct: 10  LPHSFNQQPLYR----NLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQT-IPLLSHHLINF 64

Query: 507 YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
           YS++    ++  +F +   ++  +W+S+++ +  + L   +   F  M ++G+ PD   F
Sbjct: 65  YSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIF 124

Query: 567 LVLLYACS--HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624
                +C    S  V + L  F ++   + +       + ++D+  +   +  A  + + 
Sbjct: 125 PSATKSCGILSSLPVAKMLHCF-ALKTAYHLDIFVG--SSVIDMYAKCGDICYAHNVFDE 181

Query: 625 MPMEPTPIIWVALLNGCRIHANVELGE------LAANRLLELESEKDGSYTLLS 672
           MP     + W  L     I+  V+LGE      L    L+E E+E    +TL S
Sbjct: 182 MPYRNV-VSWSGL-----IYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSS 229


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/576 (37%), Positives = 314/576 (54%), Gaps = 45/576 (7%)

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y+  G  + + AL ++ R        + +++ I  ++ RGH   AL +   M   GL P
Sbjct: 332 AYAASGRLDLSLALLRRTRDPTA----IFYTSAIHAHSSRGHRLPALALLSDMLAQGLLP 387

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
              TL + L  C  +     G+  H Y  K  L+ D        V  AL+ MYA+     
Sbjct: 388 TAHTLSASLPACRGLSP---GRALHGYAFKLALAGDS------YVATALLGMYARAGDAT 438

Query: 409 VARVMFDAIAPK------------------------------NRDVATWTVMIGSYSQNG 438
            AR +FD + P                                +D   W  MI  Y+Q+G
Sbjct: 439 AARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHG 498

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
             N+AL LF +M      V+P+  T+   L A A+L  +  G+ +H+YV  ++   L   
Sbjct: 499 RPNEALRLFRRMLGSG--VEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVR 556

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V   LIDMY + G +  A  VF  +  +++V W +++ GY MHG   KA   F Q R++G
Sbjct: 557 VGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQG 616

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
           L P  +TF+ LL ACSHSGMV++G ++F SM +E+GI  + EHY C+VDLLGRA  + EA
Sbjct: 617 LWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEA 676

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
             L++ M + P  ++WV+LL  CR+H N+ LG+  A+ L+       G Y LLSNIYA  
Sbjct: 677 FCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAV 736

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
           G W +VAR+RS+MK +G++K PGCS ++       F  GD +HP++ +IY +L  +   +
Sbjct: 737 GNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLV 796

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  G+VPQT   LHD+D+  K   L  HSEKLALA+G+++T PG  I+I KNLR C DCH
Sbjct: 797 KEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCH 856

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           + +  IS I   +I+ RD NRFHHF +GSC+C  YW
Sbjct: 857 AVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 162/636 (25%), Positives = 255/636 (40%), Gaps = 125/636 (19%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPS----HLIAAYVSHNAPSPALSLLQRISPSPF 98
           LL  C +  +   +H  ++   L           L  AY +      +L+LL+R +  P 
Sbjct: 295 LLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRR-TRDPT 353

Query: 99  SVFWWNALIRRAVR-LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           ++F+ +A+   + R  RLP  A  L   M+ +G  P  +T    L AC  L   R   ++
Sbjct: 354 AIFYTSAIHAHSSRGHRLP--ALALLSDMLAQGLLPTAHTLSASLPACRGLSPGR---AL 408

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H          + +V  AL+ MYAR                                  +
Sbjct: 409 HGYAFKLALAGDSYVATALLGMYAR----------------------------------A 434

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           GDA     LF  M  D  V    VS+   L+  A +G          +++A+ +F+ +  
Sbjct: 435 GDATAARALFDDMLPDPHV----VSVTAMLTCYADMGA---------LDDARSLFDGLPT 481

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
           KD V WNAM+ GY++ G   +A  LF++M    V+                         
Sbjct: 482 KDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVE------------------------- 516

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
                     P+ VT+V +LS  A +G +  GK  H Y +K    V  S    + V  AL
Sbjct: 517 ----------PDEVTVVLVLSAVAQLGTVESGKWLHSY-VKNSRRVQLS----VRVGTAL 561

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           IDMY KC S+  A  +F  I   ++D+  W  MI  Y+ +G +  AL +F Q  +Q   +
Sbjct: 562 IDMYCKCGSLGDAVDVFHGIG--DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQG--L 617

Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDT 515
            P   T    L AC+    +  GR+    + R +Y  + P + +  C++D+  R+G I  
Sbjct: 618 WPTDITFIGLLNACSHSGMVEEGREFFQSMER-EYG-IDPKIEHYGCMVDLLGRAGLIKE 675

Query: 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV--LLYA 572
           A  +  ++K   + V W SL+    +H          D +  +GLA  G+  L+  +  A
Sbjct: 676 AFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAA 735

Query: 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP-TP 631
             + G V +      SM K  GI       +  +D         E  E + G    P T 
Sbjct: 736 VGNWGEVAR----VRSMMKASGIQKEPGCSSIEID--------REVYEFVAGDMSHPRTD 783

Query: 632 IIWVAL--LNG-CRIHANVELGELAANRLLELESEK 664
            I+V L  +NG  + H +V   EL  + L E   EK
Sbjct: 784 EIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEK 819


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/487 (42%), Positives = 287/487 (58%), Gaps = 9/487 (1%)

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+  +   +L  CA  G   LG+  HC  +K     D      +++   L+D YAK   V
Sbjct: 28  PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYD------MILQTGLLDFYAKHGYV 81

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
           + AR +FD +  +N +  TW  MI +Y Q G    A+++F QM  Q + VKP   T+   
Sbjct: 82  EEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQM--QSENVKPTEVTMVSL 139

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L ACA L AL  G  IH Y+ R +   +   + N LIDMY + G ++ A  VF  L ++N
Sbjct: 140 LSACAHLGALDMGEWIHGYI-RTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKN 198

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
           +  W S++ G GM+G G++A  AF  M KEG+ PDGVTF+ +L  CSHSG++  G +YF 
Sbjct: 199 IFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFS 258

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
            M   +G+    EHY C+VDLLGRA  L EA+ELI  MPM+P  ++  +LL  C+IH + 
Sbjct: 259 EMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDT 318

Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
           +LGE    +LLEL+    G+Y  LSN+YA+  RW DV   R LM   GV K PGCS ++ 
Sbjct: 319 KLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEV 378

Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
                 F  GD +HPQ  +I   L  + + +K  G+VP T+  LHD+++EEK   +  HS
Sbjct: 379 NNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHS 438

Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
           E++A+A+G+++T PG  IR+ KNLR C DCHSA+  IS     EII+RD  RFHHF+ GS
Sbjct: 439 ERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGS 498

Query: 828 CTCKGYW 834
           C+C  YW
Sbjct: 499 CSCNDYW 505



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 196/458 (42%), Gaps = 69/458 (15%)

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           +IR ++   +  +    +  M+R    P + +F  +L++C     ++ G + H  I   G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM 225
           F+ ++ +   L+  YA+   +  AR LFD M +    + V+WNT+++AY Q G+    + 
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERN-SNSVTWNTMISAYVQCGEFGTAIS 119

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285
           +F +M  +  V+   V++V+ LSACA LG    G+        K    R+K+ DVV  NA
Sbjct: 120 MFQQMQSE-NVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTK----RLKI-DVVLGNA 173

Query: 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345
           ++  Y + G+ E A  +F  + ++    N+  W+++I G    G G EA+  F  M+  G
Sbjct: 174 LIDMYCKCGALEAAIDVFHGLSRK----NIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEG 229

Query: 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405
           ++P+ VT V +LSGC+  G L  G+         +L V G  P                 
Sbjct: 230 IKPDGVTFVGILSGCSHSGLLSAGQR----YFSEMLGVYGLEP----------------- 268

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
                             V  +  M+    + G   +AL L   M      +KPN+  L 
Sbjct: 269 -----------------GVEHYGCMVDLLGRAGYLKEALELIRAM-----PMKPNSMVLG 306

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIP-------FVANCLIDMYSRSGDIDTARV 518
             L AC      + G Q+   +L      L P       F++N L    SR  D++T R 
Sbjct: 307 SLLRACQIHKDTKLGEQVTQQLLE-----LDPCDGGNYVFLSN-LYASLSRWDDVNTCRK 360

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGL--GDKAHWAFDQM 554
           +            +S+     +H    GD +H  F Q+
Sbjct: 361 LMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQI 398



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 157/388 (40%), Gaps = 39/388 (10%)

Query: 41  SLLLRQCKSLTQVYL---IHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISP 95
           SL+LR C    +  L    H QI+     +  +  + L+  Y  H     A +L   ++ 
Sbjct: 34  SLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTE 93

Query: 96  SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
              +   WN +I   V+      A  +F QM      P E T   +L AC  L +   G 
Sbjct: 94  RNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 153

Query: 156 SVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215
            +H  I +     +V + NAL+ MY +C  L  A  +F  + +    +I  WN+I+    
Sbjct: 154 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRK---NIFCWNSIIVGLG 210

Query: 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERM 275
            +G  E  +  F  M  +  ++ DGV+ V  LS C+  G  S G++     E   V+   
Sbjct: 211 MNGRGEEAIAAFIVMEKE-GIKPDGVTFVGILSGCSHSGLLSAGQR--YFSEMLGVYGLE 267

Query: 276 KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335
               V  +  MV    R G  ++A  L + M    +K N +   +++   A + H    L
Sbjct: 268 --PGVEHYGCMVDLLGRAGYLKEALELIRAMP---MKPNSMVLGSLLR--ACQIHKDTKL 320

Query: 336 DVFRQMQFCGLEP----NVVTLVSLLSGCA------SVGALLLGKETH----CYTIK--- 378
                 Q   L+P    N V L +L +  +      +   L++ +  H    C +I+   
Sbjct: 321 GEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNN 380

Query: 379 ---RVLSVDGSHPDDLMVINALIDMYAK 403
                ++ D SHP     INA +D  AK
Sbjct: 381 IVHEFVAGDTSHP-QFTQINAFLDEIAK 407


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 313/552 (56%), Gaps = 42/552 (7%)

Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
           N+  ++A+I G++   +  +A   + Q Q  GL P+ +T   L+  C  +  + +G + H
Sbjct: 83  NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAH 142

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYA------------------------------- 402
            + IK           D+ V N+L+ MYA                               
Sbjct: 143 GHIIKHGFE------KDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFN 196

Query: 403 KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
           KC  V+ AR +FD +  KN  + TW+ MI  Y+QN   + A+ LF  +  Q + V+ N  
Sbjct: 197 KCGDVESARKLFDQMPEKN--LVTWSTMISGYAQNNHFDKAVELFKVL--QSQGVRANET 252

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            +   + +CA L AL  G + H YV++N   + +  +   L+DMY+R G ID A  VF++
Sbjct: 253 VMVSVISSCAHLGALELGERAHDYVVKNGMTLNL-ILGTALVDMYARCGSIDKAVWVFED 311

Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
           L +R+ +SWT+L+ G  MHG  +++   F  M + GL P  +TF  +L ACSH G+V++G
Sbjct: 312 LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERG 371

Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
            + F+SM ++  +  R EHY C+VDLLGRA +L+EA   +  MP++P   +W ALL  CR
Sbjct: 372 FQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACR 431

Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
           IH N E+GE     L++L  +  G Y LLSNIYANA  W+ V  +R +MK  G+KK PG 
Sbjct: 432 IHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGH 491

Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
           S ++       F +GD +HP+  KI  +   ++ RI+A GY   T+ AL D+D+EEK   
Sbjct: 492 SLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESA 551

Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
           L  HSEKLA+A+G++ +  GTPIRI KNLR+C DCH+A   IS +   E+I+RD NRFHH
Sbjct: 552 LHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHH 611

Query: 823 FKEGSCTCKGYW 834
           F++G C+C  YW
Sbjct: 612 FRQGLCSCMDYW 623



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 205/436 (47%), Gaps = 58/436 (13%)

Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM----YARCDTLSYARQLFDE 195
           F L+ C +L   +    +HA +  +    +VF  + L+A      +    + YA ++F +
Sbjct: 22  FSLETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQ 78

Query: 196 MFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALSACAS 252
           +  P   ++  +N ++  ++ S + +     + +     + QG   D ++    + +C  
Sbjct: 79  IQNP---NLFIFNAMIRGHSGSKNPDQAFHFYVQ----SQRQGLLPDNLTFPFLVKSCTK 131

Query: 253 LGTWSRGKQC--------------------------GMMEEAKKVFERMKVKDVVSWNAM 286
           L   S G Q                           G  E A  +F+RM   DVVSW +M
Sbjct: 132 LHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSM 191

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
           + G+++ G  E A  LF +M ++N+    VTWS +I+GYAQ  H  +A+++F+ +Q  G+
Sbjct: 192 IRGFNKCGDVESARKLFDQMPEKNL----VTWSTMISGYAQNNHFDKAVELFKVLQSQGV 247

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406
             N   +VS++S CA +GAL LG+  H Y +K  +++      +L++  AL+DMYA+C S
Sbjct: 248 RANETVMVSVISSCAHLGALELGERAHDYVVKNGMTL------NLILGTALVDMYARCGS 301

Query: 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466
           +D A  +F+ +    RD  +WT +I   + +G +  +L  F  M +    + P   T + 
Sbjct: 302 IDKAVWVFEDLP--ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAG--LTPRDITFTA 357

Query: 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFDNLKQ 525
            L AC+    +  G QI   + R+           C++D+  R+G ++ A R V     +
Sbjct: 358 VLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVK 417

Query: 526 RNVVSWTSLMTGYGMH 541
            N   W +L+    +H
Sbjct: 418 PNAPVWGALLGACRIH 433



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 207/469 (44%), Gaps = 91/469 (19%)

Query: 7   VFPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLT 66
           VF  L+ K P          KLFS+ T             C  LT + +IH  +I    T
Sbjct: 10  VFKTLRLKNP----------KLFSLET-------------CSDLTHLKIIHAYMI---RT 43

Query: 67  HV-----PPSHLIAAYVSHNAPSPALSLLQRIS------PSPFSVFWWNALIRRAVRLRL 115
           H+       S LIA  V    PS   SL+   S       +P ++F +NA+IR     + 
Sbjct: 44  HIICDVFAASRLIAFCVD---PSSGTSLIDYASRIFSQIQNP-NLFIFNAMIRGHSGSKN 99

Query: 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
           PD AF  ++Q  R+G  PD  TFPF++K+C +L     GS  H  I   GF+ +V+V N+
Sbjct: 100 PDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNS 159

Query: 176 LMAMYA-------------------------------RCDTLSYARQLFDEMFQPGICDI 204
           L+ MYA                               +C  +  AR+LFD+M +    ++
Sbjct: 160 LVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEK---NL 216

Query: 205 VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264
           V+W+T+++ YAQ+   +  + LF  +     V+ +   +V+ +S+CA LG    G++   
Sbjct: 217 VTWSTMISGYAQNNHFDKAVELFKVLQSQ-GVRANETVMVSVISSCAHLGALELGERA-- 273

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324
                 V +     +++   A+V  Y+R GS + A  +F+ + +     + ++W+A+IAG
Sbjct: 274 ---HDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPER----DTLSWTALIAG 326

Query: 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD 384
            A  G+   +L  F  M   GL P  +T  ++LS C+  G +  G     + I   +  D
Sbjct: 327 LAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERG-----FQIFESMKRD 381

Query: 385 GSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
                 L     ++D+  +   ++ A   F    P   +   W  ++G+
Sbjct: 382 HRVEPRLEHYGCMVDLLGRAGKLEEAE-RFVLKMPVKPNAPVWGALLGA 429



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 111/253 (43%), Gaps = 19/253 (7%)

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI----D 505
           +F+  +L  P  F+L      C+ L  L+    IHAY++R    +   F A+ LI    D
Sbjct: 10  VFKTLRLKNPKLFSLE----TCSDLTHLKI---IHAYMIRTHI-ICDVFAASRLIAFCVD 61

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
             S +  ID A  +F  ++  N+  + +++ G+      D+A   + Q +++GL PD +T
Sbjct: 62  PSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLT 121

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F  L+ +C+    +  G +    + K  G          +V +       + A  + + M
Sbjct: 122 FPFLVKSCTKLHCISMGSQAHGHIIKH-GFEKDVYVQNSLVHMYATFGDTEAATLIFQRM 180

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIYANAGRWKDV 684
                 + W +++ G     +VE    +A +L +   EK+  +++ + + YA    +   
Sbjct: 181 YYVDV-VSWTSMIRGFNKCGDVE----SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKA 235

Query: 685 ARIRSLMKHTGVK 697
             +  +++  GV+
Sbjct: 236 VELFKVLQSQGVR 248


>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
 gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
          Length = 923

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/741 (33%), Positives = 390/741 (52%), Gaps = 34/741 (4%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA+I   V     D A  LF QM   G  P++ T    L AC           +HA   
Sbjct: 208 WNAMISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFAR 267

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
               D++  V  AL+ MY +   +  A ++F+ + +    D+VSWN ++ A A +G  + 
Sbjct: 268 ELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQER---DVVSWNAMLTANACNGFHDK 324

Query: 223 GLMLFARM--TGDVKVQGDGVSLVNALSACASLG------TWSRGKQCGMMEEAKKVFER 274
               F  M   G++  +   V+++NA    A L       T +    CG+          
Sbjct: 325 AFKCFREMLLVGELPSRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGI---------- 374

Query: 275 MKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            +  DVV   A++  YSR  S + AF+    + Q+  + +++ W+ V++ Y +     EA
Sbjct: 375 -ESVDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEA 433

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
             +FR M   G+  + V+L+++ + C S  +L  GK  H    +  L+          V 
Sbjct: 434 FTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGKWIHSLLTESELT------RKTPVQ 487

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NAL+ MYA+  S++ AR +FDA+  +N  V +WT M+G +SQ G   +AL +F  +  + 
Sbjct: 488 NALVTMYARLGSLEDAREIFDAMTTRN--VISWTAMVGVHSQLGLNREALRIFRSILLEG 545

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
             V PN  T +  L AC  LA++   + + A +    +   +  VAN L+    + G ++
Sbjct: 546 --VAPNEVTFTAVLNACGNLASIPAAKLVQACLSETGFFGNVE-VANGLLCTLGKCGSLE 602

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
                F  +  +N VSW + +     HG G +    F  M+ EG+    VT + +L +CS
Sbjct: 603 EVANFFQVMAVKNQVSWNTAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLSSCS 662

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII- 633
           H+G+V QG  YF +M  ++G  A AEHY+C++DLL RA  L+ A E ++ +P     +  
Sbjct: 663 HAGLVAQGYSYFLNMHVDYGFPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPFGDQSVFP 722

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W+ LL GC++H ++E G  A  R+L L     G Y ++ N+YA AG+W + A +R  M  
Sbjct: 723 WITLLCGCKLHGDLERGGRATQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVE 782

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
            G KK PG SW++ K     F VGD +HP+S +I+  L  L + +K  G+V      ++D
Sbjct: 783 LGPKKEPGLSWIEVKGRIHEFRVGDTSHPRSSEIHRELERLNEEMKRAGFVCDIKAVVYD 842

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           +  +EK  LL +HSEKLA+A+G+++TA G P+RI KNLR+C DCHSA  FIS ++  EI+
Sbjct: 843 LQAKEKESLLCQHSEKLAIAFGLISTAAGEPLRIMKNLRVCSDCHSATKFISGLVGREIV 902

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD+ RFHHF+ G+C+C+ +W
Sbjct: 903 VRDAYRFHHFRGGACSCEDFW 923



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/583 (24%), Positives = 258/583 (44%), Gaps = 62/583 (10%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D  TF  ++  C  L     G  +H +I  +G +   F+   L+AMY +C +   AR +F
Sbjct: 39  DASTFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPEEARAVF 98

Query: 194 DEMFQPGICD--IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNALS 248
                 GI D  +V+W +++   A+SG  +    LF  M    ++QG   + V+ V  L 
Sbjct: 99  Q-----GIQDKSVVAWTSLIGVNARSGHPKEAFHLFREM----QLQGVMPNDVTYVAVLG 149

Query: 249 ACASLGTW------SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFAL 302
           AC     W      +R + CG +E            DV+   A++  Y + G  + A+ +
Sbjct: 150 ACGH--PWEVDTIRARVEACGSLE-----------LDVIVATAVMNAYGKCGDLDSAWGV 196

Query: 303 FKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
           F  +    +  +   W+A+I+       G EAL++FRQM+  G+ PN  T V+ L+ C  
Sbjct: 197 FDGI----LVRDAAVWNAMISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCH 252

Query: 363 VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422
                     H +   R L+ D     D +V  AL++MY K   VD A  +F+ I  + R
Sbjct: 253 SRDFSEALRIHAFA--RELAGDA----DTVVQTALVNMYGKFGKVDDAEEIFERI--QER 304

Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ 482
           DV +W  M+ + + NG  + A   F +M    +L  P+  T    L AC   A L+ G  
Sbjct: 305 DVVSWNAMLTANACNGFHDKAFKCFREMLLVGEL--PSRITYVAILNACFLAAHLKHGDF 362

Query: 483 IHAYVLRN--QYEMLIPFVANCLIDMYSR----SGDIDTARVVFDNLKQRNVVSWTSLMT 536
           +    +      E +   +   +++MYSR         ++ ++  +  Q +++ W ++++
Sbjct: 363 VKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQDRDQPSIMMWNTVLS 422

Query: 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
            Y  +   ++A   F  M   G+  D V+ + +  AC  S  +++G K+  S+  E  ++
Sbjct: 423 LYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKG-KWIHSLLTESELT 481

Query: 597 ARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA--- 653
            +      +V +  R   L++A E+ + M      I W A++    +H+ + L   A   
Sbjct: 482 RKTPVQNALVTMYARLGSLEDAREIFDAMTTRNV-ISWTAMVG---VHSQLGLNREALRI 537

Query: 654 -ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
             + LLE  +  + ++T + N   N         +++ +  TG
Sbjct: 538 FRSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQACLSETG 580



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 167/373 (44%), Gaps = 22/373 (5%)

Query: 62  VQNLTHVPPSHLIAAYVSHNAPSPALS---LLQRISPSPFSVFWWNALIRRAVRLRLPDN 118
           ++++  V  + ++  Y    +P  A S   LL++    P S+  WN ++   V     + 
Sbjct: 374 IESVDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQDRDQP-SIMMWNTVLSLYVENEQFEE 432

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           AF +F  M+  G   D  +   V  ACG   S   G  +H+++  S       V NAL+ 
Sbjct: 433 AFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVT 492

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MYAR  +L  AR++FD M      +++SW  +V  ++Q G     L +F  +  +  V  
Sbjct: 493 MYARLGSLEDAREIFDAMTTR---NVISWTAMVGVHSQLGLNREALRIFRSILLE-GVAP 548

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           + V+    L+AC +L +    K           F  ++V      N ++    + GS E+
Sbjct: 549 NEVTFTAVLNACGNLASIPAAKLVQACLSETGFFGNVEVA-----NGLLCTLGKCGSLEE 603

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
               F+ M  +    N V+W+  IA  AQ G+G   +++F+ MQ  G++   VTL+ +LS
Sbjct: 604 VANFFQVMAVK----NQVSWNTAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLS 659

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C+  G +  G     Y+    + VD   P +    + +ID+ ++   ++ A      + 
Sbjct: 660 SCSHAGLVAQG-----YSYFLNMHVDYGFPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLP 714

Query: 419 PKNRDVATWTVMI 431
             ++ V  W  ++
Sbjct: 715 FGDQSVFPWITLL 727



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 98/213 (46%), Gaps = 8/213 (3%)

Query: 49  SLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNAL 106
           SL +   IH  +    LT   P  + L+  Y    +   A  +   ++    +V  W A+
Sbjct: 464 SLEKGKWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTR--NVISWTAM 521

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
           +    +L L   A R+F  ++  G  P+E TF  VL ACG L S      V A +  +GF
Sbjct: 522 VGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQACLSETGF 581

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
             NV V N L+    +C +L      F  M    + + VSWNT +AA AQ G+   G+ L
Sbjct: 582 FGNVEVANGLLCTLGKCGSLEEVANFFQVM---AVKNQVSWNTAIAANAQHGNGVRGVEL 638

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259
           F  M  +  +    V+L+  LS+C+  G  ++G
Sbjct: 639 FQTMQLE-GIDTGSVTLIGVLSSCSHAGLVAQG 670


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/506 (43%), Positives = 312/506 (61%), Gaps = 13/506 (2%)

Query: 333 EALDVFRQMQF-CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDL 391
           E   +FR ++    L  N ++    L  C   G LL G + H     ++ S DG   D L
Sbjct: 95  EGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIH----GKIFS-DGFLSDSL 149

Query: 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMF 451
           + +  L+D+Y+ C++   A  +FD I PK RD  +W V+   Y +N    D L LF +M 
Sbjct: 150 L-MTTLMDLYSTCENSTDACKVFDEI-PK-RDTVSWNVLFSCYLRNKRTRDVLVLFDKMK 206

Query: 452 QQ-DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS 510
              D  VKP+  T   AL ACA L AL FG+Q+H ++  N     +  ++N L+ MYSR 
Sbjct: 207 NDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALN-LSNTLVSMYSRC 265

Query: 511 GDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570
           G +D A  VF  +++RNVVSWT+L++G  M+G G +A  AF++M K G++P+  T   LL
Sbjct: 266 GSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLL 325

Query: 571 YACSHSGMVDQGLKYFDSM-SKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
            ACSHSG+V +G+ +FD M S EF I     HY C+VDLLGRA  LD+A  LI+ M M+P
Sbjct: 326 SACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKP 385

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
              IW  LL  CR+H +VELGE   + L+EL++E+ G Y LL N Y+  G+W+ V  +RS
Sbjct: 386 DSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRS 445

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           LMK   +  +PGCS ++ +     F V D +HP+ ++IY++LA + Q++K  GYV + + 
Sbjct: 446 LMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITS 505

Query: 750 ALHDVD-DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
            LH+++ +EEKG  L  HSEKLA+A+GIL T PGT IR+TKNLR C DCH+   F+S + 
Sbjct: 506 ELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVY 565

Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
           +  +I+RD +RFHHFK GSC+C  +W
Sbjct: 566 DRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 171/351 (48%), Gaps = 23/351 (6%)

Query: 91  QRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP-DEYTFPFVLKACGELP 149
           QR++P+   +   N +IR     + P   FRLF  + R    P +  +  F LK C +  
Sbjct: 71  QRLNPT---LSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSG 127

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNT 209
               G  +H  I S GF S+  +   LM +Y+ C+  + A ++FDE+ +    D VSWN 
Sbjct: 128 DLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKR---DTVSWNV 184

Query: 210 IVAAYAQSGDAEGGLMLFARMTGDVK--VQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
           + + Y ++      L+LF +M  DV   V+ DGV+ + AL ACA+LG    GKQ     +
Sbjct: 185 LFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFID 244

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
              +   + +      N +V+ YSR GS + A+ +F  MR+ NV    V+W+A+I+G A 
Sbjct: 245 ENGLSGALNLS-----NTLVSMYSRCGSMDKAYQVFYGMRERNV----VSWTALISGLAM 295

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
            G G EA++ F +M   G+ P   TL  LLS C+  G +  G         R+ S +   
Sbjct: 296 NGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGM----MFFDRMRSGEFKI 351

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             +L     ++D+  + + +D A  +  ++  K  D   W  ++G+   +G
Sbjct: 352 KPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKP-DSTIWRTLLGACRVHG 401


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 330/569 (57%), Gaps = 40/569 (7%)

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           SF  A  +FK + ++  K     W++ +   A+     +A+ +F +++   + P+  T  
Sbjct: 75  SFHYAQQIFKCVEKQ--KPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCS 132

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
           S+L  C ++  L  G+  H   +++V         +L + N ++ +YA C  +  AR++F
Sbjct: 133 SVLRACLNLLDLSNGRILHG-VVEKV-----GFRSNLYLQNMIVHLYASCGEMGEARLLF 186

Query: 415 DAIAPKN-----------------------------RDVATWTVMIGSYSQNGGANDALA 445
           + +  ++                             R+V +WT MI  Y Q G A +A+ 
Sbjct: 187 EKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIH 246

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           LF +M  ++  VK N  T+   L ACA L AL  G +IH Y  R+ ++  +  ++N LID
Sbjct: 247 LFAKM--EEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVR-ISNTLID 303

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY + G ++ A  VF+ +++R VVSW++++ G  MHG  ++A   F  M + G+ P+GVT
Sbjct: 304 MYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVT 363

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F+ LL+ACSH G++ +G ++F SM++++GI  + EHY C+VDLL RA  L EA E I  M
Sbjct: 364 FIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNM 423

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
           PM+P  ++W ALL  CR+H NVE+ E A   LLEL+   DG Y +LSNIYA AGRW+D A
Sbjct: 424 PMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTA 483

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
           R+R  MK   VKK PG S +        F  G+ +HP +++I++    L++ ++  GYVP
Sbjct: 484 RVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVP 543

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
            TS  L D+++ EK   +  HSEKLAL +G++ T   TPIRI KNLRIC DCHSA   IS
Sbjct: 544 NTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLIS 603

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            I+N EI++RD NRFH F + SC+C+ YW
Sbjct: 604 AIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 160/360 (44%), Gaps = 67/360 (18%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQN--LTHVPPSH--LIAAYV-SHNAPSPALSLLQRISPSP 97
           LLR   S  ++  +H QII  N  L+ +P +   L+ A+  S +        +++  P  
Sbjct: 34  LLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPET 93

Query: 98  FSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
           F    WN+ ++       P +A  LF ++ +    PD +T   VL+AC  L     G  +
Sbjct: 94  FV---WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 150

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H V+   GF SN+++ N ++ +YA C  +  AR LF++M Q    D+V+WN ++A   + 
Sbjct: 151 HGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQR---DVVTWNIMIAQLIKQ 207

Query: 218 GDAEGGLMLFARMT-----------------GDVK-------------VQGDGVSLVNAL 247
           GD EG   LF+RM                  G  K             V+ + V++V  L
Sbjct: 208 GDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL 267

Query: 248 SACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDVV 281
           +ACA LG    G                           +CG +EEA KVFE M+ + VV
Sbjct: 268 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
           SW+AM+ G +  G  E+A  LF  M Q  ++ N VT+  ++   +  G   E    F  M
Sbjct: 328 SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 387


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/757 (32%), Positives = 391/757 (51%), Gaps = 100/757 (13%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            P+     F      +   S     +H+ I  +G   + F+   ++++YA    +S A++
Sbjct: 28  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 87

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +F+        +++ WN+I+ A    G  E  L ++ RM   + V  DG +    + ACA
Sbjct: 88  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMR-KLGVSADGFTFPLVIRACA 146

Query: 252 SLGT-----------------WS----------RGKQCGMMEEAKKVFERMKVKDVVSWN 284
            +G+                 W+           GK  G M++A+KVFERM V+  VSWN
Sbjct: 147 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGK-IGRMDDARKVFERMAVRSCVSWN 205

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
            MV+GY+       A  +F+ M    ++ N+VTW+++++ +A+ G   E +++F +M+  
Sbjct: 206 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 265

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G+      L  +LS    + A   GK  H Y +K      G   + L V N+LI +Y K 
Sbjct: 266 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVK------GGFENYLFVKNSLICLYGKH 319

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-------- 456
            +V+ AR++F  I  KN  + +W  +I SY+  G  ++A A+F Q+ + D+         
Sbjct: 320 GNVNAARILFLEIKTKN--IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVV 377

Query: 457 -----------------------------VKPNAFTLSCALMACARLAALRFGRQIHAYV 487
                                        VK N+ T++  L  CA LAAL  GR+IH +V
Sbjct: 378 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 437

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +R+  +  I  V N LI+MY++SG      +VF+ ++ ++++SW +++ GYG+HGLG+ A
Sbjct: 438 VRSLMDGNI-LVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENA 496

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              FDQM K+G  PDGVTF+ +L ACSH+G+V +G + FD M KEF +  + EHYAC+VD
Sbjct: 497 IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVD 556

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LLGRA  L EA ++++ MP+EP   +W ALLN CR+H N E+ E  A+++  L SE  GS
Sbjct: 557 LLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGS 616

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y LLSNIYA +GRW+D A++R   K  G+KK PG SW+Q K+    F  G+  H + +++
Sbjct: 617 YMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEV 676

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL--------FEHSEKLALAYGILTT 779
           Y IL  L  +++  GY+P       D+D+E++  LL        F+ +  L    G  T 
Sbjct: 677 YRILKDLGLQMEVEGYIP-------DIDEEQRSILLGYSMPLPSFKTTSSLLFQKGT-TY 728

Query: 780 APGT---------PIRITKNLRICGDCHSAITFISMI 807
            P           PI I K L I      A+ ++  I
Sbjct: 729 KPSVIDIDAIITIPIDIKKRLNIININKPAVFYVQRI 765



 Score =  206 bits (525), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 163/580 (28%), Positives = 271/580 (46%), Gaps = 107/580 (18%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI-SPSPFSVF 101
           LL+QC        IH QIIV   +H   + L A  VS  A    +S  QR+   SP   F
Sbjct: 40  LLQQCSKSHLSQQIHSQIIVTG-SH-RSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF 97

Query: 102 ----WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
                WN+++R  V     + A  ++ +M + G   D +TFP V++AC  + S +   SV
Sbjct: 98  SNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   GF  N+ V N LM MY +   +  AR++F+ M    +   VSWNT+V+ YA +
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM---AVRSCVSWNTMVSGYALN 214

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
            D  G   +F RM G   ++ + V+  + LS+ A         +CG   E  ++F RM++
Sbjct: 215 YDCHGASEMF-RMMGSAGLEPNLVTWTSLLSSHA---------RCGQHVETMELFGRMRM 264

Query: 278 K-----------------DVVSWN--AMVTGYSRIGSFED-------------------- 298
           +                 D+ +++   ++ GY   G FE+                    
Sbjct: 265 RGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNA 324

Query: 299 AFALFKKMRQEN-----------------------------------VKLNVVTWSAVIA 323
           A  LF +++ +N                                   V+ NVV+WSAVI 
Sbjct: 325 ARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIG 384

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G+A +G G EAL++FR+MQ   ++ N VT+ S+LS CA + AL LG+E H + ++ ++  
Sbjct: 385 GFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLM-- 442

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
           DG    +++V N LI+MY K  S     ++F+ I  +N+D+ +W  M+  Y  +G   +A
Sbjct: 443 DG----NILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDLISWNTMVAGYGIHGLGENA 496

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANC 502
           +  F QM +     +P+  T    L AC+    +  GR++   +++  + E  +   A C
Sbjct: 497 IRTFDQMIKDG--FEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYA-C 553

Query: 503 LIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           ++D+  R+G +  A  V  ++  + N   W +L+    MH
Sbjct: 554 MVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 593


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 316/572 (55%), Gaps = 53/572 (9%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G ++ AK+VF  M  +DVV+ NAM++  S+ G  E+A  LF  M + N      +W+++I
Sbjct: 59  GDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNS----CSWNSMI 114

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
             Y + G  + A  +F                                   C  +K V+S
Sbjct: 115 TCYCKLGDINSARLMF----------------------------------DCNPVKDVVS 140

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                       NA+ID Y K K +  A+ +F  +    R+  TW  MI +Y Q G    
Sbjct: 141 -----------WNAIIDGYCKSKQLVAAQELF-LLMGSARNSVTWNTMISAYVQCGEFGT 188

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           A+++F QM  Q + VKP   T+   L ACA L AL  G  IH Y+ R +   +   + N 
Sbjct: 189 AISMFQQM--QSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYI-RTKRLKIDVVLGNA 245

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           LIDMY + G ++ A  VF  L ++N+  W S++ G GM+G G++A  AF  M KEG+ PD
Sbjct: 246 LIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPD 305

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
           GVTF+ +L  CSHSG++  G +YF  M   +G+    EHY C+VDLLGRA  L EA+ELI
Sbjct: 306 GVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELI 365

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MPM+P  ++  +LL  C+IH + +LGE    +LLEL+    G+Y  LSN+YA+  RW 
Sbjct: 366 RAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWD 425

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DV   R LM   GV K PGCS ++       F  GD +HPQ  +I   L  + + +K  G
Sbjct: 426 DVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQG 485

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           +VP T+  LHD+++EEK   +  HSE++A+A+G+++T PG  IR+ KNLR C DCHSA+ 
Sbjct: 486 HVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMK 545

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS     EII+RD  RFHHF+ GSC+C  YW
Sbjct: 546 LISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 196/393 (49%), Gaps = 34/393 (8%)

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M+R    P + +F  +L++C     ++ G + H  I   GF+ ++ +   L+  YA+   
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245
           L  A+++F  M +    D+V+ N +++A ++ G  E    LF  MT     + +  S  +
Sbjct: 61  LKCAKRVFMGMPRR---DVVANNAMISALSKHGYVEEARNLFDNMT-----ERNSCSWNS 112

Query: 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
            ++    LG          +  A+ +F+   VKDVVSWNA++ GY +      A  LF  
Sbjct: 113 MITCYCKLGD---------INSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLL 163

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M       N VTW+ +I+ Y Q G    A+ +F+QMQ   ++P  VT+VSLLS CA +GA
Sbjct: 164 MGSAR---NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGA 220

Query: 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425
           L +G+  H Y   + L +      D+++ NALIDMY KC +++ A  +F  ++ KN  + 
Sbjct: 221 LDMGEWIHGYIRTKRLKI------DVVLGNALIDMYCKCGALEAAIDVFHGLSRKN--IF 272

Query: 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485
            W  +I     NG   +A+A F  M ++   +KP+  T    L  C+    L  G++  +
Sbjct: 273 CWNSIIVGLGMNGRGEEAIAAFIVMEKEG--IKPDGVTFVGILSGCSHSGLLSAGQRYFS 330

Query: 486 YVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTA 516
            +L      L P V +  C++D+  R+G +  A
Sbjct: 331 EML--GVYGLEPGVEHYGCMVDLLGRAGYLKEA 361



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 132/321 (41%), Gaps = 34/321 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I   V+      A  +F QM      P E T   +L AC  L +   G  +H  I 
Sbjct: 173 WNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIR 232

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
           +     +V + NAL+ MY +C  L  A  +F  + +    +I  WN+I+     +G  E 
Sbjct: 233 TKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRK---NIFCWNSIIVGLGMNGRGEE 289

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            +  F  M  +  ++ DGV+ V  LS C+  G  S G++     E   V+       V  
Sbjct: 290 AIAAFIVMEKE-GIKPDGVTFVGILSGCSHSGLLSAGQR--YFSEMLGVYGLE--PGVEH 344

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
           +  MV    R G  ++A  L + M    +K N +   +++   A + H    L      Q
Sbjct: 345 YGCMVDLLGRAGYLKEALELIRAMP---MKPNSMVLGSLLR--ACQIHKDTKLGEQVTQQ 399

Query: 343 FCGLEP----NVVTLVSLLSGCA------SVGALLLGKETH----CYTIK------RVLS 382
              L+P    N V L +L +  +      +   L++ +  H    C +I+        ++
Sbjct: 400 LLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVA 459

Query: 383 VDGSHPDDLMVINALIDMYAK 403
            D SHP     INA +D  AK
Sbjct: 460 GDTSHP-QFTQINAFLDEIAK 479


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/801 (32%), Positives = 402/801 (50%), Gaps = 49/801 (6%)

Query: 51  TQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIR 108
            Q  ++H  I   +L       + L+ AY        AL +  RI   P  + W  A++ 
Sbjct: 148 AQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQV-PDLICWNAAIMA 206

Query: 109 RAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS 168
            A     PD A  L  +M   G  P+  +F  +L +CG+  S     S+HA +   GF  
Sbjct: 207 CAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLG 266

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           +V V  AL+ MY RC ++  +  +F+ M    + + VSWN ++AA+AQ G       ++ 
Sbjct: 267 DVVVATALVTMYGRCGSVDESIAVFEAM---AVRNHVSWNAMIAAFAQCGHRSAAFAIYW 323

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------CGMMEEAKKVFERMKVKDV 280
           RM  +   + + ++ V AL A  S  +   G+         C  +E            DV
Sbjct: 324 RMQQE-GFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLE-----------GDV 371

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           +   A+VT Y   G+ + A A F  +  +N+    V+W+A++  Y   G   EA+++F  
Sbjct: 372 MVGTALVTMYGSTGAIDRARAAFDAIPAKNI----VSWNAMLTAYGDNGRAREAMELFAA 427

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M+   L PN V+ +++L  C  V        +   +I   +  +G    +  + N ++ M
Sbjct: 428 MKRQSLAPNKVSYLAVLGCCEDV--------SEARSIHAEVVGNGLFAQESSIANGVVRM 479

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           +A+  S++ A   FDA   K  D  +W   + + S     + A+  F  M  Q +  +P+
Sbjct: 480 FARSGSLEEAMAAFDATVVK--DSVSWNTKVAALSAREDLHGAITAFYTM--QHEGFRPD 535

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD-IDTARVV 519
            FTL   +  CA L  L  GR I   +           V + +++M ++ G  +D    +
Sbjct: 536 KFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERL 595

Query: 520 FDNL--KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR-KEGLAPDGVTFLVLLYACSHS 576
           F  +   ++++V+W +++  Y  HG G KA   F  M+ +  + PD  TF+ +L  CSH+
Sbjct: 596 FARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHA 655

Query: 577 GMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
           G+V+ G+  F    +  GI  +  EHYAC+VD+LGR   L EA + I  MP+    ++W 
Sbjct: 656 GLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWT 715

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           +LL  C  + ++E GE AA   +EL       Y +LSNIYA AGRW+D  R+R  M    
Sbjct: 716 SLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERR 775

Query: 696 VKKR-PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
           VKKR PG S +  K     FF  DR+HPQS +IY  L  L   I+  GYVP T   LHDV
Sbjct: 776 VKKRAPGKSSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIREAGYVPDTRLVLHDV 835

Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
           ++E+K  LL+ HSEKLA+A+G+++      IR+ KNLR+C DCH+A  FI+ +   EI +
Sbjct: 836 EEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAV 895

Query: 815 RDSNRFHHF-KEGSCTCKGYW 834
           RD NRFHHF K+G C+C  YW
Sbjct: 896 RDCNRFHHFGKDGECSCGDYW 916



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 232/486 (47%), Gaps = 58/486 (11%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G  +H  I   G   N  + N L+ MY++C +L  A   F  +   G   I +WNT++A 
Sbjct: 43  GRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSALRSRG---IATWNTLIA- 98

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK---QCGMMEEAKK 270
            AQS  A     L+ RM    K++    +  N L+  A LG  + G          +A+ 
Sbjct: 99  -AQSSPA-AVFDLYTRM----KLEERAENRPNRLTIIAVLGAIASGDPSSSSSSRAQARI 152

Query: 271 VFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI---A 323
           V + ++     +D+    A++  Y + G  E A  +F +++      +++ W+A I   A
Sbjct: 153 VHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVP----DLICWNAAIMACA 208

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G  +R     AL + R+M   GL PN  + V++LS C    +L L +  H    +  L  
Sbjct: 209 GNDER--PDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEE--LGF 264

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
            G    D++V  AL+ MY +C SVD +  +F+A+A +N    +W  MI +++Q G  + A
Sbjct: 265 LG----DVVVATALVTMYGRCGSVDESIAVFEAMAVRNH--VSWNAMIAAFAQCGHRSAA 318

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQ--IHAYVLRNQYEMLIPFVAN 501
            A++ +M Q+    +PN  T   AL A    ++   G    +H ++     E  +  V  
Sbjct: 319 FAIYWRMQQEG--FRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDV-MVGT 375

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L+ MY  +G ID AR  FD +  +N+VSW +++T YG +G   +A   F  M+++ LAP
Sbjct: 376 ALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAP 435

Query: 562 DGVTFLVLLYACS--------HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           + V++L +L  C         H+ +V  GL      ++E  I+        +V +  R+ 
Sbjct: 436 NKVSYLAVLGCCEDVSEARSIHAEVVGNGL-----FAQESSIA------NGVVRMFARSG 484

Query: 614 RLDEAV 619
            L+EA+
Sbjct: 485 SLEEAM 490



 Score = 48.1 bits (113), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 88/242 (36%), Gaps = 49/242 (20%)

Query: 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
           TL+  L  C   A L  GRQ+H  +++ Q       + N L+ MYS+   +D A   F  
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVK-QGLARNDLLGNYLVQMYSKCRSLDDANAAFSA 84

Query: 523 LKQRNVVSWTSLMTG--------------------------------YGMHGLGD----- 545
           L+ R + +W +L+                                   G    GD     
Sbjct: 85  LRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSSSS 144

Query: 546 ----KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
               +A    D +R   L  D      LL A    G V+  L+ F  +     I   A  
Sbjct: 145 SSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAI 204

Query: 602 YACIVDLLGRANRLDEAVELIEGMPME---PTPIIWVALLNGCRIHANVELGELAANRLL 658
            AC     G   R D A+ L+  M +E   P    +VA+L+ C  H+++ L      R+ 
Sbjct: 205 MACA----GNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVE 260

Query: 659 EL 660
           EL
Sbjct: 261 EL 262


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 335/572 (58%), Gaps = 38/572 (6%)

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y+  G    + ALF     + +  ++  ++A I   +  G   +A  ++ Q+    + P
Sbjct: 73  AYASHGKIRHSLALF----HQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINP 128

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD------------------------ 384
           N  T  SLL  C++      GK  H + +K  L +D                        
Sbjct: 129 NEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVF 184

Query: 385 GSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
              P+  L+   A+I  YAK  +V+ AR +FD++    RD+ +W VMI  Y+Q+G  NDA
Sbjct: 185 DRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC--ERDIVSWNVMIDGYAQHGFPNDA 242

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L LF ++  + K  KP+  T+  AL AC+++ AL  GR IH +V  ++  + +  V   L
Sbjct: 243 LMLFQKLLAEGK-PKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVK-VCTGL 300

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPD 562
           IDMYS+ G ++ A +VF++  ++++V+W +++ GY MHG    A   F++M+   GL P 
Sbjct: 301 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPT 360

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            +TF+  L AC+H+G+V++G++ F+SM +E+GI  + EHY C+V LLGRA +L  A E I
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
           + M M+   ++W ++L  C++H +  LG+  A  L+ L  +  G Y LLSNIYA+ G ++
Sbjct: 421 KNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
            VA++R+LMK  G+ K PG S ++ +     F  GDR H +S++IY +L  + +RIK+ G
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHG 540

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           YVP T+  L D+++ EK   L  HSE+LA+AYG+++T PG+P++I KNLR+C DCH+   
Sbjct: 541 YVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTK 600

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS I   +I++RD NRFHHF +GSC+C  +W
Sbjct: 601 LISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 179/394 (45%), Gaps = 69/394 (17%)

Query: 41  SLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIA-----AYVSHNAPSPALSLL-QRIS 94
           ++L+ + +S+ +V  IH  I+  NL   P   ++      AY SH     +L+L  Q I 
Sbjct: 33  AVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTID 92

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
           P    +F + A I  A    L D AF L++Q++    +P+E+TF  +LK+C    S++ G
Sbjct: 93  PD---LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC----STKSG 145

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC------------ 202
             +H  +   G   + +V   L+ +YA+   +  A+++FD M +  +             
Sbjct: 146 KLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQ 205

Query: 203 ----------------DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA 246
                           DIVSWN ++  YAQ G     LMLF ++  + K + D +++V A
Sbjct: 206 GNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAA 265

Query: 247 LSACASLGTWSRGK--------------------------QCGMMEEAKKVFERMKVKDV 280
           LSAC+ +G    G+                          +CG +EEA  VF     KD+
Sbjct: 266 LSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 325

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQ-ENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
           V+WNAM+ GY+  G  +DA  LF +M+    ++   +T+   +   A  G  +E + +F 
Sbjct: 326 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFE 385

Query: 340 QM-QFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
            M Q  G++P +     L+S     G L    ET
Sbjct: 386 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYET 419



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 153/284 (53%), Gaps = 19/284 (6%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A+KVF+RM  + +VS  AM+T Y++ G+ E A ALF  M +     ++V+W+ +I
Sbjct: 175 GDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCER----DIVSWNVMI 230

Query: 323 AGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
            GYAQ G  ++AL +F+++   G  +P+ +T+V+ LS C+ +GAL  G+  H +     +
Sbjct: 231 DGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRI 290

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
            +      ++ V   LIDMY+KC S++ A ++F+   P+ +D+  W  MI  Y+ +G + 
Sbjct: 291 RL------NVKVCTGLIDMYSKCGSLEEAVLVFND-TPR-KDIVAWNAMIAGYAMHGYSQ 342

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           DAL LF +M Q    ++P   T    L ACA    +  G  I  +    Q   + P + +
Sbjct: 343 DALRLFNEM-QGITGLQPTDITFIGTLQACAHAGLVNEG--IRIFESMGQEYGIKPKIEH 399

Query: 502 --CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
             CL+ +  R+G +  A     N+    + V W+S++    +HG
Sbjct: 400 YGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 21/230 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGW-HPDEYTFPFVLKACGELPSSRCGSSVH 158
           +  WN +I    +   P++A  LF +++  G   PDE T    L AC ++ +   G  +H
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
             + SS    NV VC  L+ MY++C +L  A  +F++  +    DIV+WN ++A YA  G
Sbjct: 283 VFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRK---DIVAWNAMIAGYAMHG 339

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
            ++  L LF  M G   +Q   ++ +  L ACA           G++ E  ++FE M  +
Sbjct: 340 YSQDALRLFNEMQGITGLQPTDITFIGTLQACA---------HAGLVNEGIRIFESMGQE 390

Query: 279 -----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA 323
                 +  +  +V+   R G  + A+   K M   N+  + V WS+V+ 
Sbjct: 391 YGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNM---NMDADSVLWSSVLG 437


>gi|115482524|ref|NP_001064855.1| Os10g0477200 [Oryza sativa Japonica Group]
 gi|110289259|gb|AAP54276.2| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|110289260|gb|ABG66139.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639464|dbj|BAF26769.1| Os10g0477200 [Oryza sativa Japonica Group]
 gi|215695099|dbj|BAG90290.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 699

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/749 (31%), Positives = 372/749 (49%), Gaps = 79/749 (10%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I   V+    D A  +F +M      PD  T   +L AC  L +   G  +H+ + 
Sbjct: 13  WNCIISGCVQNARYDEALNIFCEMCESE-SPDAVTVASILPACTGLMALGIGKQLHSYVI 71

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G   NV++ ++L+ MY+ C    YAR +F  + +    +   WN ++ +Y        
Sbjct: 72  RCGIKLNVYIGSSLIGMYSECGEFGYARSVFAAIEEK---NATVWNELIRSYINEE---- 124

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
                                                     M EA + F  MK      
Sbjct: 125 -----------------------------------------RMNEAWEAFRLMKENGLQP 143

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D +++N+ +  Y+R G  E A+ L   M +  +K NVV+ +A+I+G    G   +AL+ F
Sbjct: 144 DTITYNSFIAAYARAGQKEQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAF 203

Query: 339 RQMQFCG-------------LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           R MQ                ++PN  T+ S+LS    +    LGKE HCY  +  L    
Sbjct: 204 RYMQVSSDGEAKGWALPGNSIQPNGTTITSVLSLLTDLRLDRLGKEVHCYAFRSGL---- 259

Query: 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALA 445
               ++ V + L+D+Y K   V  A  +F  I+  N++V TW  ++ SY QN     AL 
Sbjct: 260 --ISNIFVSSKLVDLYGKTGDVGTADKVFRRIS--NKNVVTWNSILASYRQNRKPEIALK 315

Query: 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505
           LF +M + + L  PN  TL  AL++     AL+ GR++H Y+ +N  +     +A+ LID
Sbjct: 316 LFHEMIKSNLL--PNLVTLQIALLSSGMTMALQHGRELHGYIRKNWPDGYPTALASALID 373

Query: 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           MY + G I+ AR+VF+   ++++ +W ++M+ Y +H +  +    F  + + G+ PD VT
Sbjct: 374 MYGKCGKIEDARLVFECTDEKDIATWNAIMSAYLLHRIPGEVKKLFKYIEQSGIQPDPVT 433

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625
           F++LL AC   G +++  +YF SM   +GI    +HY C+VD++G A  L+E++ELI+ M
Sbjct: 434 FIILLSACKQEGSMEEARRYFYSMEDVYGIQPTLKHYTCMVDIMGMAGLLEESLELIQKM 493

Query: 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685
            +EP   +W  LL  C++H+N+E+GE AA  L ELE     +Y  LSNIYA+ G W+   
Sbjct: 494 QLEPDGCLWSILLKACKLHSNLEIGEKAAKALFELEPNNTSNYMSLSNIYADNGLWESTE 553

Query: 686 RIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVP 745
            +R  M   G+     CS +       TF  GD +HP  +KI      L  R++  GY P
Sbjct: 554 ALRVAMTEQGLNVERQCSRLYLGTDVHTFEAGDSSHPAFEKILSTWNDLSDRMEQSGYPP 613

Query: 746 QTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805
           Q    +    + E   L  +H+E++AL YG+++      IRI+KN R+C +CHS+I FIS
Sbjct: 614 QD---IEPYSNAEADPLSCQHTERIALCYGLISVRVHDLIRISKNFRMCMECHSSIKFIS 670

Query: 806 MIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             +N EI + D   +HHF+ G+C+C   W
Sbjct: 671 RDMNREIFVSDGCTYHHFQNGACSCGDMW 699



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 45/257 (17%)

Query: 71  SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
           S L+  Y        A  + +RIS    +V  WN+++    + R P+ A +LF +M++  
Sbjct: 267 SKLVDLYGKTGDVGTADKVFRRISNK--NVVTWNSILASYRQNRKPEIALKLFHEMIKSN 324

Query: 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDS-NVFVCNALMAMYARCDTLSYA 189
             P+  T    L + G   + + G  +H  I  +  D     + +AL+ MY +C  +  A
Sbjct: 325 LLPNLVTLQIALLSSGMTMALQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDA 384

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK----------VQGD 239
           R +F+   +    DI +WN I++AY           L  R+ G+VK          +Q D
Sbjct: 385 RLVFECTDEK---DIATWNAIMSAY-----------LLHRIPGEVKKLFKYIEQSGIQPD 430

Query: 240 GVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS-------WNAMVTGYSR 292
            V+ +  LSAC         KQ G MEEA++ F  M  +DV         +  MV     
Sbjct: 431 PVTFIILLSAC---------KQEGSMEEARRYFYSM--EDVYGIQPTLKHYTCMVDIMGM 479

Query: 293 IGSFEDAFALFKKMRQE 309
            G  E++  L +KM+ E
Sbjct: 480 AGLLEESLELIQKMQLE 496


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 320/572 (55%), Gaps = 15/572 (2%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G +  A+ +FE +  ++V+SWN ++ G  + G    A  LF KM   NV     TW+A++
Sbjct: 91  GDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNV----ATWNAMV 146

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           AG    G   ++L  F  M+  G+ P+   L S+   CA +  ++ G++ H Y ++  + 
Sbjct: 147 AGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMD 206

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
                  D+ V N+L  MY +C  +     +  A+      + ++   I   +QNG +  
Sbjct: 207 ------SDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLT--IVSFNTTIAGRTQNGDSEG 258

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502
           AL  F  M   +  V P+  T   A+  C+ LAAL  G+Q+HA V++   + ++P + + 
Sbjct: 259 ALEYFSMMRGVE--VAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITS- 315

Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
           L+ MYSR G +  +  V+D     ++   +++++  G HG G KA   F QM   G  P+
Sbjct: 316 LVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPN 375

Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
            VTFL LLYACSHSG+ D+GL++F+ M+K +G     +HY CIVDLLGR+  LDEA  LI
Sbjct: 376 EVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALI 435

Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
             MP+    +IW  LL+ C+   N ++ E  A R++E +      Y LLSNI A + RW 
Sbjct: 436 LSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWG 495

Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
           DV  +R +M+   ++K PG SWV+ K     F  GD++HP+  +I E L  ++ +I+  G
Sbjct: 496 DVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCG 555

Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
           Y P  +   HD++DEEK   L  HSEKLA+A+  L    G PIR+ KNLR+C DCH AI 
Sbjct: 556 YAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIK 615

Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            IS +   EI++RD +RFHHF++G C+C  YW
Sbjct: 616 LISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 166/335 (49%), Gaps = 19/335 (5%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +V  WNA++     + L +++ + FL M R G HPDE+    V + C  L     G  VH
Sbjct: 138 NVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVH 197

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A +  SG DS++ V N+L  MY RC  L+    +   +  P +  IVS+NT +A   Q+G
Sbjct: 198 AYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRAL--PSL-TIVSFNTTIAGRTQNG 254

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
           D+EG L  F+ M G V+V  D V+ V+A+S C+ L   ++G+Q        +V +    K
Sbjct: 255 DSEGALEYFSMMRG-VEVAPDVVTFVSAISCCSDLAALAQGQQV-----HAQVIKAGVDK 308

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
            V    ++V  YSR G   D+    +++      L++   SA+I+     G GH+A+++F
Sbjct: 309 VVPVITSLVHMYSRCGCLGDS----ERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELF 364

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
           +QM   G EPN VT ++LL  C+  G     K+      + +    G  P  +   N ++
Sbjct: 365 KQMMNGGAEPNEVTFLALLYACSHSGL----KDEGLEFFELMTKTYGFQP-SVKHYNCIV 419

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
           D+  +   +D A  +  ++ P   D   W  ++ +
Sbjct: 420 DLLGRSGCLDEAEALILSM-PVRADGVIWKTLLSA 453



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
           F  N L+  Y+  GD+ TAR +F+ + +RNV+SW  L+ G   +G    A   FD+M   
Sbjct: 78  FTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTR 137

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592
            +A    T+  ++   ++ G+ +  L++F +M +E
Sbjct: 138 NVA----TWNAMVAGLTNVGLDEDSLQFFLAMRRE 168


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/518 (39%), Positives = 314/518 (60%), Gaps = 12/518 (2%)

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+A+  GY++ G   +AL V+  M    +EP   ++   L  C  +  L +G+  H   +
Sbjct: 211 WAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIV 270

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           KR   VD       +V N L+ +Y +    D AR +FD ++ +N  V TW  +I   S+ 
Sbjct: 271 KRKEKVDQ------VVYNVLLKLYMESGLFDDARKVFDGMSERN--VVTWNSLISVLSKK 322

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
              ++   LF +M  Q++++  +  TL+  L AC+R+AAL  G++IHA +L+++ +  +P
Sbjct: 323 VRVHEMFNLFRKM--QEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVP 380

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            + N L+DMY + G+++ +R VFD +  +++ SW  ++  Y ++G  ++    F+ M + 
Sbjct: 381 LL-NSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIES 439

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+APDG+TF+ LL  CS +G+ + GL  F+ M  EF +S   EHYAC+VD+LGRA ++ E
Sbjct: 440 GVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKE 499

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           AV++IE MP +P+  IW +LLN CR+H NV +GE+AA  L  LE    G+Y ++SNIYA+
Sbjct: 500 AVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYAD 559

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY-EILAGLVQ 736
           A  W +V +IR +MK  GVKK  GCSWVQ K+    F  G     ++   Y ++   L +
Sbjct: 560 AKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQE 619

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
            I+  GY P TS  LHDVD+E K + +  HSE+LA  Y ++ T  G PIRITKNLR+C D
Sbjct: 620 AIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCAD 679

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CHS +  +S +    I+LRD+ RFHHF +G C+CK YW
Sbjct: 680 CHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 717



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 30/266 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+     R   P +A  +++ M+     P  ++    LKAC +L   R G  +HA I 
Sbjct: 211 WAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIV 270

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                 +  V N L+ +Y        AR++FD M +    ++V+WN++++  ++      
Sbjct: 271 KRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSER---NVVTWNSLISVLSKKVRVHE 327

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
              LF +M  ++ +     +L   L AC+ +     GK+                     
Sbjct: 328 MFNLFRKMQEEM-IGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLM 386

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                CG +E +++VF+ M  KD+ SWN M+  Y+  G+ E+   LF+ M +  V  + +
Sbjct: 387 DMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGI 446

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQ 342
           T+ A+++G +  G     L +F +M+
Sbjct: 447 TFVALLSGCSDTGLTEYGLSLFERMK 472


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/518 (39%), Positives = 314/518 (60%), Gaps = 12/518 (2%)

Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
           W+A+  GY++ G   +AL V+  M    +EP   ++   L  C  +  L +G+  H   +
Sbjct: 204 WAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIV 263

Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
           KR   VD       +V N L+ +Y +    D AR +FD ++ +N  V TW  +I   S+ 
Sbjct: 264 KRKEKVDQ------VVYNVLLKLYMESGLFDDARKVFDGMSERN--VVTWNSLISVLSKK 315

Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
              ++   LF +M  Q++++  +  TL+  L AC+R+AAL  G++IHA +L+++ +  +P
Sbjct: 316 VRVHEMFNLFRKM--QEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVP 373

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            + N L+DMY + G+++ +R VFD +  +++ SW  ++  Y ++G  ++    F+ M + 
Sbjct: 374 LL-NSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIES 432

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+APDG+TF+ LL  CS +G+ + GL  F+ M  EF +S   EHYAC+VD+LGRA ++ E
Sbjct: 433 GVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKE 492

Query: 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677
           AV++IE MP +P+  IW +LLN CR+H NV +GE+AA  L  LE    G+Y ++SNIYA+
Sbjct: 493 AVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYAD 552

Query: 678 AGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY-EILAGLVQ 736
           A  W +V +IR +MK  GVKK  GCSWVQ K+    F  G     ++   Y ++   L +
Sbjct: 553 AKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQE 612

Query: 737 RIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGD 796
            I+  GY P TS  LHDVD+E K + +  HSE+LA  Y ++ T  G PIRITKNLR+C D
Sbjct: 613 AIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCAD 672

Query: 797 CHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           CHS +  +S +    I+LRD+ RFHHF +G C+CK YW
Sbjct: 673 CHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 30/266 (11%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W A+     R   P +A  +++ M+     P  ++    LKAC +L   R G  +HA I 
Sbjct: 204 WAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIV 263

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                 +  V N L+ +Y        AR++FD M +    ++V+WN++++  ++      
Sbjct: 264 KRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSER---NVVTWNSLISVLSKKVRVHE 320

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
              LF +M  ++ +     +L   L AC+ +     GK+                     
Sbjct: 321 MFNLFRKMQEEM-IGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLM 379

Query: 262 -----CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
                CG +E +++VF+ M  KD+ SWN M+  Y+  G+ E+   LF+ M +  V  + +
Sbjct: 380 DMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGI 439

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQ 342
           T+ A+++G +  G     L +F +M+
Sbjct: 440 TFVALLSGCSDTGLTEYGLSLFERMK 465


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 326/551 (59%), Gaps = 20/551 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y +     DA  LF +M Q NV    ++W+ +I+ Y++     +AL++   M  
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNV----ISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
             + PNV T  S+L  C  +  +   +  HC  IK  L        D+ V +ALID++AK
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLE------SDVFVRSALIDVFAK 206

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
               + A  +FD +     D   W  +IG ++QN  ++ AL LF +M ++   +   A T
Sbjct: 207 LGEPEDALSVFDEMVTG--DAIVWNSIIGGFAQNSRSDVALELFKRM-KRAGFIAEQA-T 262

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L+  L AC  LA L  G Q H ++++   ++++    N L+DMY + G ++ A  VF+ +
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVKYDQDLILN---NALVDMYCKCGSLEDALRVFNQM 319

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           K+R+V++W+++++G   +G   +A   F++M+  G  P+ +T + +L+ACSH+G+++ G 
Sbjct: 320 KERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGW 379

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YF SM K +GI    EHY C++DLLG+A +LD+AV+L+  M  EP  + W  LL  CR+
Sbjct: 380 YYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV 439

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
             N+ L E AA +++ L+ E  G+YTLLSNIYAN+ +W  V  IR+ M+  G+KK PGCS
Sbjct: 440 QRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCS 499

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++  +    F +GD +HPQ  ++ + L  L+ R+  +GYVP+T+F L D++ E+  D L
Sbjct: 500 WIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSL 559

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLALA+G++T      IRI KNLRICGDCH      S +    I++RD  R+HHF
Sbjct: 560 RHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHF 619

Query: 824 KEGSCTCKGYW 834
           ++G C+C  YW
Sbjct: 620 QDGKCSCGDYW 630



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 215/422 (50%), Gaps = 37/422 (8%)

Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
           A +    +   G   D  T+  ++K C    +   G+ +   +  +G    +F+ N L+ 
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
           MY + + L+ A QLFD+M Q    +++SW T+++AY++    +  L L   M  D  V+ 
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQR---NVISWTTMISAYSKCKIHQKALELLVLMLRD-NVRP 160

Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
           +  +  + L +C  +    R   CG+++E  +        DV   +A++  ++++G  ED
Sbjct: 161 NVYTYSSVLRSCNGMSD-VRMLHCGIIKEGLE-------SDVFVRSALIDVFAKLGEPED 212

Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
           A ++F +M    V  + + W+++I G+AQ      AL++F++M+  G      TL S+L 
Sbjct: 213 ALSVFDEM----VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
            C  +  L LG + H + +K        +  DL++ NAL+DMY KC S++ A  +F+ + 
Sbjct: 269 ACTGLALLELGMQAHVHIVK--------YDQDLILNNALVDMYCKCGSLEDALRVFNQM- 319

Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
            K RDV TW+ MI   +QNG + +AL LF +M  +    KPN  T+   L AC+    L 
Sbjct: 320 -KERDVITWSTMISGLAQNGYSQEALKLFERM--KSSGTKPNYITIVGVLFACSHAGLLE 376

Query: 479 FGRQIHAYVLRNQYEM--LIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTS 533
            G     Y  R+  ++  + P   +  C+ID+  ++G +D A  + + ++ + + V+W +
Sbjct: 377 DG----WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 534 LM 535
           L+
Sbjct: 433 LL 434



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 171/395 (43%), Gaps = 77/395 (19%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  YV  N  + A  L  ++     +V  W  +I    + ++   A  L + M+R    
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQR--NVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ YT+  VL++C  +   R    +H  I   G +S+VFV +AL+ ++A+      A  +
Sbjct: 160 PNVYTYSSVLRSCNGMSDVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSAC 250
           FDEM      D + WN+I+  +AQ+  ++  L LF RM   G +  Q    +L + L AC
Sbjct: 217 FDEMVTG---DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQA---TLTSVLRAC 270

Query: 251 ASLGTWSRGKQ------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
             L     G Q                        CG +E+A +VF +MK +DV++W+ M
Sbjct: 271 TGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTM 330

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           ++G ++ G  ++A  LF++M+    K N +T   V+   +  G   +    FR M +  G
Sbjct: 331 ISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG 390

Query: 346 L--------------------------------EPNVVTLVSLLSGCASVGALLLGKETH 373
           +                                EP+ VT  +LL  C     ++L +   
Sbjct: 391 IDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE--- 447

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408
            Y  K+V+++D   P+D      L ++YA  +  D
Sbjct: 448 -YAAKKVIALD---PEDAGTYTLLSNIYANSQKWD 478



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 149/327 (45%), Gaps = 19/327 (5%)

Query: 35  PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH--VPPSHLIAAYVSHNAPSPALSLLQR 92
           P +   S +LR C  ++ V ++H  II + L       S LI  +     P  ALS+   
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 93  ISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR 152
           +      V  WN++I    +    D A  LF +M R G+  ++ T   VL+AC  L    
Sbjct: 220 MVTGDAIV--WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277

Query: 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212
            G   H  I    +D ++ + NAL+ MY +C +L  A ++F++M +    D+++W+T+++
Sbjct: 278 LGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER---DVITWSTMIS 332

Query: 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVF 272
             AQ+G ++  L LF RM      + + +++V  L AC+  G    G         KK++
Sbjct: 333 GLAQNGYSQEALKLFERMKSS-GTKPNYITIVGVLFACSHAGLLEDGWY--YFRSMKKLY 389

Query: 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
               V++   +  M+    + G  +DA  L  +M  E    + VTW  ++   A R   +
Sbjct: 390 GIDPVRE--HYGCMIDLLGKAGKLDDAVKLLNEMECEP---DAVTWRTLLG--ACRVQRN 442

Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSG 359
             L  +   +   L+P      +LLS 
Sbjct: 443 MVLAEYAAKKVIALDPEDAGTYTLLSN 469



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 22/189 (11%)

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           ++ T S  +  C    A+  G  I  ++  N +  ++ F+ N LI+MY +   ++ A  +
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMM-FLVNVLINMYVKFNLLNDAHQL 118

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----- 574
           FD + QRNV+SWT++++ Y    +  KA      M ++ + P+  T+  +L +C+     
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 575 ---HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
              H G++ +GL+     S  F  SA       ++D+  +    ++A+ + + M +    
Sbjct: 179 RMLHCGIIKEGLE-----SDVFVRSA-------LIDVFAKLGEPEDALSVFDEM-VTGDA 225

Query: 632 IIWVALLNG 640
           I+W +++ G
Sbjct: 226 IVWNSIIGG 234


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/536 (40%), Positives = 318/536 (59%), Gaps = 12/536 (2%)

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359
            AL +++  E    NVV W+AV+      G   E ++ +  ++  G  PNVV++ +  + 
Sbjct: 172 LALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNA 231

Query: 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
           CA +  L LG++ + +  K           D+ V N+++D Y KC+ V  AR +FD +  
Sbjct: 232 CAGMTNLSLGEQFYGFVAKCGFG------KDVSVSNSVVDFYGKCRCVGKARAVFDGMGV 285

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479
           +N    +W  M+ +Y+QNG   +A   F  +  +    +P  F +S  L  CA L  L  
Sbjct: 286 RNN--VSWCSMVVAYAQNGAEEEAF--FVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDL 341

Query: 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG 539
           GR +HA  +R+  +  I FVA+ L+DMY + G I+ A  VF  + QRN+V+W +++ GY 
Sbjct: 342 GRALHAVAVRSCIDSNI-FVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYA 400

Query: 540 MHGLGDKAHWAFDQM-RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598
             G    A   FD+M   +  AP+ +T + +L ACS  G+  +G + F +M   FGI  R
Sbjct: 401 HIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPR 460

Query: 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLL 658
            EHYAC+VDLL RA   + A ++I+GMPM P+  +W ALL GC++H   ELG +AA +L 
Sbjct: 461 IEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLF 520

Query: 659 ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGD 718
           EL+ +  G++ LLSN+ A+AGRW +   +R  MK+ G+KK PG SW+  K     F   D
Sbjct: 521 ELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKD 580

Query: 719 RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILT 778
            TH  +++I  +LA L  +++A GY+P T +AL+D+++EEK   +F+HSEKLALA+G++ 
Sbjct: 581 TTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLIC 640

Query: 779 TAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             PG PIRI KNLRIC DCH A  FIS I   EII+RD+N FHHFK   C+CK YW
Sbjct: 641 IPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 142/483 (29%), Positives = 227/483 (46%), Gaps = 34/483 (7%)

Query: 68  VPP---SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFL 124
           +PP   +HL+  Y   + P  A +      PSP +V  + A I  A +   P  A   F 
Sbjct: 51  LPPFLCAHLVNLYSKLDLPG-AAAASLAADPSP-TVVSYTAFISGAAQHARPLQALSAFA 108

Query: 125 QMMRRGWHPDEYTFPFVLK-ACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYAR 182
            M+R G  P+++TFP   K A    P S  G+ +HA+    G+   + FV  A + MY +
Sbjct: 109 AMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCAALDMYFK 168

Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS 242
              L+ AR+LFDEM      ++V+WN ++      G     +  +  + G   +  + VS
Sbjct: 169 TGCLALARRLFDEMPNR---NVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMP-NVVS 224

Query: 243 LVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301
           +    +ACA +   S G+Q  G +  AK  F     KDV   N++V  Y +      A A
Sbjct: 225 VCAFFNACAGMTNLSLGEQFYGFV--AKCGFG----KDVSVSNSVVDFYGKCRCVGKARA 278

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           +F  M       N V+W +++  YAQ G   EA  V+   +  G EP    + S+L+ CA
Sbjct: 279 VFDGMGVR----NNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCA 334

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +  L LG+  H   ++  +        ++ V +AL+DMY KC  ++ A  +F  +    
Sbjct: 335 GLLGLDLGRALHAVAVRSCID------SNIFVASALVDMYGKCGGIEDAEQVFFEM--PQ 386

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           R++ TW  MIG Y+  G A++AL++F +M    +   PN  TL   L AC+R    + G 
Sbjct: 387 RNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQE-TAPNYITLVNVLTACSRGGLTKEGY 445

Query: 482 QI-HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLMTGYG 539
           ++      R   E  I   A C++D+  R+G  + A  +   +  R  +S W +L+ G  
Sbjct: 446 ELFQTMKWRFGIEPRIEHYA-CVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCK 504

Query: 540 MHG 542
           MHG
Sbjct: 505 MHG 507



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 128/265 (48%), Gaps = 26/265 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W +++    +    + AF ++L   R G  P ++    VL  C  L     G ++HAV  
Sbjct: 291 WCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAV 350

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S  DSN+FV +AL+ MY +C  +  A Q+F EM Q    ++V+WN ++  YA  GDA  
Sbjct: 351 RSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQR---NLVTWNAMIGGYAHIGDAHN 407

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK---- 278
            L +F +M    +   + ++LVN L+AC      SRG   G+ +E  ++F+ MK +    
Sbjct: 408 ALSVFDKMIMGQETAPNYITLVNVLTAC------SRG---GLTKEGYELFQTMKWRFGIE 458

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
             +  +  +V    R G  E A+ + + M    ++ ++  W A++ G   + HG   L  
Sbjct: 459 PRIEHYACVVDLLCRAGMEERAYKIIQGM---PMRPSISVWGALLGGC--KMHGKTELGR 513

Query: 338 FRQMQFCGLEP----NVVTLVSLLS 358
               +   L+P    N V L ++L+
Sbjct: 514 IAAEKLFELDPQDSGNHVLLSNMLA 538



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 115/304 (37%), Gaps = 48/304 (15%)

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           +A  L+ A+ A     + R GR  HA  LR     L PF+   L+++YS+      A   
Sbjct: 16  DAQLLAGAVEAAIATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAAS 75

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF------------- 566
                   VVS+T+ ++G   H    +A  AF  M + GL P+  TF             
Sbjct: 76  LAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPR 135

Query: 567 ---------LVLLY---------ACS------HSGMVDQGLKYFDSMSKEFGISARAEHY 602
                    L L +         +C+       +G +    + FD M     ++  A   
Sbjct: 136 SAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMT 195

Query: 603 ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELES 662
             ++D  GR     EA   + G    P  +   A  N C    N+ LGE     + +   
Sbjct: 196 NAVLD--GRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGF 253

Query: 663 EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG-CSWV-----QGKEGTATF-F 715
            KD S +  +++    G+ + V + R++    GV+     CS V      G E  A F +
Sbjct: 254 GKDVSVS--NSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVY 311

Query: 716 VGDR 719
           +G R
Sbjct: 312 LGAR 315


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/601 (37%), Positives = 329/601 (54%), Gaps = 22/601 (3%)

Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGM-MEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           V+ D VSL   +  C   GT   G+     +              +   N++V+ Y++ G
Sbjct: 62  VRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSLFVSNSLVSMYAKFG 121

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR-GHGHEALDVFRQMQFCGLEPNVVTL 353
             +DA  LF  M Q NV    V+W+ V+A  A   G   EAL    +M+  G+  N  T 
Sbjct: 122 MLDDALELFGGMPQRNV----VSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTF 177

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            S+L  C + G L      H   IK  L        D+ V ++LID Y K   +D  R +
Sbjct: 178 SSVLGACGTPGVL---AAMHADIIKVGLD------SDVFVRSSLIDAYMKLGDLDSGRGV 228

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           FD +     D+  W  +I  ++Q+G    A+ LF +M +   L   N  TL+  L AC  
Sbjct: 229 FDEMV--TCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLA--NQGTLTSVLRACTG 284

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           +  L  GRQ+HA+VL+   ++++    N L+DMY + G +  A  +F  +  R+V+SW++
Sbjct: 285 MVMLEVGRQVHAHVLKYDRDLIL---HNALLDMYCKCGCLLDADALFSRMHDRDVISWST 341

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++G   +G   +A   FD M+ EG  P+ +T + +L+ACSH+G+V+ G  YF SM K F
Sbjct: 342 MISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLF 401

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    EH  C+VDLLGRA +LDEA++ I  M  EP  +IW  LL  CR+H N  L   A
Sbjct: 402 GIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYA 461

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A  +L+LE E  G+  LLSNIYA+  +W +  +    M+  GVKK PG SW++  +    
Sbjct: 462 ATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHV 521

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F  G+ +HP S +I + L  L++R K +GYVPQT F L D+  E+K DLL  HSEKLA+A
Sbjct: 522 FIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIA 581

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           +G + +  G P+RI KNLRICGDCH+    +S      II+RD  RFHHF+ G C+C  Y
Sbjct: 582 FGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDY 641

Query: 834 W 834
           W
Sbjct: 642 W 642



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 233/503 (46%), Gaps = 61/503 (12%)

Query: 79  SHNAPSPALSLLQRIS-PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT 137
           SH+ P P +S+  R+    PF+          A    LPD A          G   D  +
Sbjct: 27  SHSHPHPLVSIFSRLCLDGPFT----------AALALLPDIA--------AAGVRADPVS 68

Query: 138 FPFVLKACGELPSSRCGSSVH--AVICSSGFDS----NVFVCNALMAMYARCDTLSYARQ 191
              ++K C    +   G ++H    +C+ G       ++FV N+L++MYA+   L  A +
Sbjct: 69  LCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALE 128

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQS-GDAEGGLMLFARMTGDVKVQGDGVSLVNALSAC 250
           LF  M Q    ++VSW T+VAA A + G  +  L     M  D  V  +  +  + L AC
Sbjct: 129 LFGGMPQR---NVVSWTTVVAALANAPGRKKEALRFLVEMRRD-GVAANSYTFSSVLGAC 184

Query: 251 ASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310
            + G  +      M  +  KV       DV   ++++  Y ++G  +    +F +M    
Sbjct: 185 GTPGVLA-----AMHADIIKVGLD---SDVFVRSSLIDAYMKLGDLDSGRGVFDEM---- 232

Query: 311 VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
           V  ++V W+++IAG+AQ G G  A+++F +M+  G   N  TL S+L  C  +  L +G+
Sbjct: 233 VTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGR 292

Query: 371 ETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
           + H + +K        +  DL++ NAL+DMY KC  +  A  +F  +   +RDV +W+ M
Sbjct: 293 QVHAHVLK--------YDRDLILHNALLDMYCKCGCLLDADALFSRM--HDRDVISWSTM 342

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           I   +QNG + +AL +F  M  +     PN  T+   L AC+    +  G   H +   +
Sbjct: 343 ISGLAQNGRSVEALKVFDLMKAEGP--TPNNITMVGVLFACSHAGLVEDG--WHYFRSMD 398

Query: 491 QYEMLIPFV--ANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
           +   + P     NC++D+  R+G +D A      +K + + V W +L+    MH     A
Sbjct: 399 KLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLA 458

Query: 548 HWAFDQMRKEGLAPDGVTFLVLL 570
            +A  ++ K  L P+     +LL
Sbjct: 459 SYAATEILK--LEPEDQGARILL 479



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 37/304 (12%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L++ Y        AL L   + P    V W   +   A        A R  ++M R G  
Sbjct: 113 LVSMYAKFGMLDDALELFGGM-PQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVA 171

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
            + YTF  VL ACG   +    +++HA I   G DS+VFV ++L+  Y +   L   R +
Sbjct: 172 ANSYTFSSVLGACG---TPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGV 228

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSAC 250
           FDEM     CD+V WN+I+A +AQSGD  G + LF RM  +G +  QG   +L + L AC
Sbjct: 229 FDEMVT---CDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQG---TLTSVLRAC 282

Query: 251 ASLGTWSRGKQ------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
             +     G+Q                        CG + +A  +F RM  +DV+SW+ M
Sbjct: 283 TGMVMLEVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTM 342

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           ++G ++ G   +A  +F  M+ E    N +T   V+   +  G   +    FR M +  G
Sbjct: 343 ISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFG 402

Query: 346 LEPN 349
           ++P 
Sbjct: 403 IQPE 406



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV-----LRNQ 491
           +G    ALAL P +      V+ +  +L   +  C R   +  GR IH +V         
Sbjct: 44  DGPFTAALALLPDIAAAG--VRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGG 101

Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYG-MHGLGDKAHWA 550
                 FV+N L+ MY++ G +D A  +F  + QRNVVSWT+++       G   +A   
Sbjct: 102 ATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRF 161

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
             +MR++G+A +  TF  +L AC   G++
Sbjct: 162 LVEMRRDGVAANSYTFSSVLGACGTPGVL 190


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 350/621 (56%), Gaps = 58/621 (9%)

Query: 262 CGMMEEAKKVFERM----KVKDVVSWNAMVTGYSRIGSFED---AFALFKKMRQENVKLN 314
           C  M++ K++  +M    +++D ++  A +  +S +    D   A  +F+ M + N    
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLA-AAELLRFSAVSDHRDLDYARKIFRSMHRPNC--- 76

Query: 315 VVTWSAVIAGYAQRGHGHEALDVFRQM-QFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
             +++ +I   ++     +AL VF +M + C +EPN  T  S+   C     L  G++ H
Sbjct: 77  -FSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVH 135

Query: 374 CYTIK-------------------------------RVLSVDGSH---------PDDLMV 393
              +K                               R + VDG             D+++
Sbjct: 136 GLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVL 195

Query: 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ 453
            N +ID Y +   ++VAR +FD +    R V +W VMI  Y+Q+G   +A+ +F +M  Q
Sbjct: 196 WNVMIDGYVRIGELEVARNLFDEMP--QRSVVSWNVMIAGYAQSGHFKEAVEVFREM--Q 251

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDI 513
              V PN  TL   L A +RL AL  G+ +H Y +RN    +   + + LIDMY++ G I
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIG-VDDVLGSALIDMYAKCGSI 310

Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
           + A  VF+ L +RNVV+W++++ G  MHG        F+ M + G+ P  VT++ LL AC
Sbjct: 311 EKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSAC 370

Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
           SH+G+V++G  +FD M +  G+  R EHY C+VDLLGRA  L+E+ ELI  MP++P  +I
Sbjct: 371 SHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVI 430

Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
           W ALL  C++H NVE+G+  A  L+EL     GSY  LSNIYA+ G W+ VA++R +MK 
Sbjct: 431 WKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKE 490

Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
             V+K PGCSW++       F V D +HP+S+KI+ +L  + + +  +GY P T+  L +
Sbjct: 491 MDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTN 550

Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
           +D+E+K   L  HSEK+A+A+G+++T P TP+RITKNLRIC DCHS+I  IS I   +II
Sbjct: 551 MDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKII 610

Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
           +RD  RFHHF  GSC+C  YW
Sbjct: 611 VRDRKRFHHFVNGSCSCMDYW 631



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 193/444 (43%), Gaps = 74/444 (16%)

Query: 47  CKSLTQVYLIHQQIIVQNLTHVP--PSHLI--AAYVSHNAPSPALSLLQRI-SPSPFSVF 101
           CK++  +  +H Q+I       P   + L+  +A   H     A  + + +  P+ FS  
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFS-- 78

Query: 102 WWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
            +N LIR       P +A  +F++M+      P+ +TFP V KACG     R G  VH +
Sbjct: 79  -YNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGL 137

Query: 161 ICSSGFDSNVFVCNALMAMYARCDT----------------------------------- 185
               G DS+ FV + ++ MY  C                                     
Sbjct: 138 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 197

Query: 186 -----------LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234
                      L  AR LFDEM Q     +VSWN ++A YAQSG  +  + +F  M    
Sbjct: 198 VMIDGYVRIGELEVARNLFDEMPQRS---VVSWNVMIAGYAQSGHFKEAVEVFREMQM-A 253

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIG 294
           +V  + V+LV+ L A + LG    GK   +      V   + V DV+  +A++  Y++ G
Sbjct: 254 EVPPNYVTLVSVLPAMSRLGALELGKWVHLY----AVRNNIGVDDVLG-SALIDMYAKCG 308

Query: 295 SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354
           S E A  +F+ +     K NVVTWS +IAG A  G   + LD F  M+  G+ P+ VT +
Sbjct: 309 SIEKALQVFEGL----PKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYI 364

Query: 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMF 414
            LLS C+  G +  G+    +    ++ V G  P  +     ++D+  +   ++ +  + 
Sbjct: 365 GLLSACSHAGLVNEGR----WFFDHMVRVSGLEP-RIEHYGCMVDLLGRAGLLEESEELI 419

Query: 415 DAIAPKNRDVATWTVMIGSYSQNG 438
             +  K  DV  W  ++G+   +G
Sbjct: 420 LNMPIKPDDV-IWKALLGACKMHG 442


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/717 (35%), Positives = 387/717 (53%), Gaps = 32/717 (4%)

Query: 125 QMMRRGWHPDEYT---FPFVLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMY 180
           Q + R   PD  T      +L++CG     R G  +HA ++ S    ++ F+ N L+ MY
Sbjct: 7   QRLWRPPAPDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMY 66

Query: 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240
           + C  L+ A +LF  M +    + VSW T+V+  +Q+      LM    +     ++  G
Sbjct: 67  SHCADLASALRLFAAMPRR---NAVSWTTLVSGLSQN------LMHADALAAFAAMRRAG 117

Query: 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDA 299
           V+     +  ++    +         +   V  R+    ++   + +   YS+ G   +A
Sbjct: 118 VAPTR-FALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEA 176

Query: 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNVVTLVSLLS 358
             +F +M Q++     V W+A+I GYA+ G    A+  FR M+  GL   +     S+LS
Sbjct: 177 CRVFDQMPQKDA----VAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS 232

Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA-RVMFDAI 417
               +    L K  HC   K    ++      + V NALIDMYAK   V+ A RV+   I
Sbjct: 233 ASGGLKDGWLSKSIHCCVTKAGFELE------VAVRNALIDMYAKSMDVESASRVL--KI 284

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
            P   +V + T MI  Y +     +AL ++ ++ +Q   V+PN FT S  +  CA  A L
Sbjct: 285 DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG--VEPNEFTFSSMIKGCAMQALL 342

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
             G Q+HA V++    +   FV + L+DMY + G I  +  +F+ ++ R  ++W +++  
Sbjct: 343 EQGAQLHAQVIKTDL-IRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINV 401

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           +  HG G +A  AFD+M   G+ P+ + F+ LL ACSH+G+VD+GLKYF SM +  GI  
Sbjct: 402 FAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEP 461

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
           + EHY+CI+D  GRA RLDEA + I  MP++P    W +LL  CR+  + ELGE+AA  L
Sbjct: 462 KEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNL 521

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           ++LE    G +  LS IYA+ G+W+DV  +R LM+ + +KK PG SWV   + T  F   
Sbjct: 522 MKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSE 581

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           D +HPQ + IYE L  L  RIK  GY+P TSF   +++D  K  +L  HSE++A+A+ ++
Sbjct: 582 DWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALI 641

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           +     PI + KNLRIC DCH+A  FI  +   +II+RD++RFHHF  G C+C  YW
Sbjct: 642 SMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 26/284 (9%)

Query: 88  SLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE 147
           S + +I P  ++V    ++I   +     + A  +++++ R+G  P+E+TF  ++K C  
Sbjct: 279 SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAM 338

Query: 148 LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM-FQPGICDIVS 206
                 G+ +HA +  +    + FV + L+ MY +C  +S + QLF+E+ ++  I    +
Sbjct: 339 QALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDI----A 394

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           WN ++  +AQ G     +  F RM     ++ + ++ V+ L+AC+           G+++
Sbjct: 395 WNAVINVFAQHGHGREAIQAFDRMIYS-GIRPNHIAFVSLLTACS---------HAGLVD 444

Query: 267 EAKKVFERMKVKDVVS-----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321
           E  K F  MK    +      ++ ++  Y R G  ++A+    +M    +K N   W ++
Sbjct: 445 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM---PIKPNAYGWCSL 501

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEP-NVVTLVSLLSGCASVG 364
           +   A R  G + L          LEP N    VSL    AS+G
Sbjct: 502 LG--ACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLG 543


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/749 (32%), Positives = 390/749 (52%), Gaps = 95/749 (12%)

Query: 132  HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
             P+     F      +   S     +H+ I  +G   + F+   ++++YA    +S A++
Sbjct: 866  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 925

Query: 192  LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
            +F+        +++ WN+I+ A    G  E  L ++ RM   + V  DG +    + ACA
Sbjct: 926  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMR-KLGVSADGFTFPLVIRACA 984

Query: 252  SLGT-----------------WS----------RGKQCGMMEEAKKVFERMKVKDVVSWN 284
             +G+                 W+           GK  G M++A+KVFERM V+  VSWN
Sbjct: 985  LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGK-IGRMDDARKVFERMAVRSCVSWN 1043

Query: 285  AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
             MV+GY+       A  +F+ M    ++ N+VTW+++++ +A+ G   E +++F +M+  
Sbjct: 1044 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 1103

Query: 345  GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
            G+      L  +LS    + A   GK  H Y +K      G   + L V N+LI +Y K 
Sbjct: 1104 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVK------GGFENYLFVKNSLICLYGKH 1157

Query: 405  KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-------- 456
             +V+ AR++F  I  KN  + +W  +I SY+  G  ++A A+F Q+ + D+         
Sbjct: 1158 GNVNAARILFLEIKTKN--IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVV 1215

Query: 457  -----------------------------VKPNAFTLSCALMACARLAALRFGRQIHAYV 487
                                         VK N+ T++  L  CA LAAL  GR+IH +V
Sbjct: 1216 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 1275

Query: 488  LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
            +R+  +  I  V N LI+MY++SG      +VF+ ++ ++++SW +++ GYG+HGLG+ A
Sbjct: 1276 VRSLMDGNI-LVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENA 1334

Query: 548  HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
               FDQM K+G  PDGVTF+ +L ACSH+G+V +G + FD M KEF +  + EHYAC+VD
Sbjct: 1335 IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVD 1394

Query: 608  LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
            LLGRA  L EA ++++ MP+EP   +W ALLN CR+H N E+ E  A+++  L SE  GS
Sbjct: 1395 LLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGS 1454

Query: 668  YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
            Y LLSNIYA +GRW+D A++R   K  G+KK PG SW+Q K+    F  G+  H + +++
Sbjct: 1455 YMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEV 1514

Query: 728  YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL-FEHSEKLALAY--------GILT 778
            Y IL  L  +++  GY+P       D+D+E++  LL + +       Y         I+T
Sbjct: 1515 YRILKDLGLQMEVEGYIP-------DIDEEQRSILLGYRYVRLKGTTYKPSVIDIDAIIT 1567

Query: 779  TAPGTPIRITKNLRICGDCHSAITFISMI 807
                 PI I K L I      A+ ++  I
Sbjct: 1568 ----IPIDIKKRLNIININKPAVFYVQRI 1592



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 163/580 (28%), Positives = 271/580 (46%), Gaps = 107/580 (18%)

Query: 43   LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI-SPSPFSVF 101
            LL+QC        IH QIIV   +H   + L A  VS  A    +S  QR+   SP   F
Sbjct: 878  LLQQCSKSHLSQQIHSQIIVTG-SH-RSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF 935

Query: 102  ----WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
                 WN+++R  V     + A  ++ +M + G   D +TFP V++AC  + S +   SV
Sbjct: 936  SNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 995

Query: 158  HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
            H  +   GF  N+ V N LM MY +   +  AR++F+ M    +   VSWNT+V+ YA +
Sbjct: 996  HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM---AVRSCVSWNTMVSGYALN 1052

Query: 218  GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
             D  G   +F RM G   ++ + V+  + LS+ A         +CG   E  ++F RM++
Sbjct: 1053 YDCHGASEMF-RMMGSAGLEPNLVTWTSLLSSHA---------RCGQHVETMELFGRMRM 1102

Query: 278  K-----------------DVVSWN--AMVTGYSRIGSFED-------------------- 298
            +                 D+ +++   ++ GY   G FE+                    
Sbjct: 1103 RGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNA 1162

Query: 299  AFALFKKMRQEN-----------------------------------VKLNVVTWSAVIA 323
            A  LF +++ +N                                   V+ NVV+WSAVI 
Sbjct: 1163 ARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIG 1222

Query: 324  GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
            G+A +G G EAL++FR+MQ   ++ N VT+ S+LS CA + AL LG+E H + ++ ++  
Sbjct: 1223 GFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLM-- 1280

Query: 384  DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
            DG    +++V N LI+MY K  S     ++F+ I  +N+D+ +W  M+  Y  +G   +A
Sbjct: 1281 DG----NILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDLISWNTMVAGYGIHGLGENA 1334

Query: 444  LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANC 502
            +  F QM +     +P+  T    L AC+    +  GR++   +++  + E  +   A C
Sbjct: 1335 IRTFDQMIKDG--FEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYA-C 1391

Query: 503  LIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
            ++D+  R+G +  A  V  ++  + N   W +L+    MH
Sbjct: 1392 MVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 1431


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/655 (35%), Positives = 365/655 (55%), Gaps = 31/655 (4%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           +VF W  +I  +    L  + F+ F +M+  G  PD++ +  ++++C  L S   G  VH
Sbjct: 131 NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVH 190

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
           A I   GF +++FV  +L+ MYA+  ++  +  +F+ M +    + VSWN +++    +G
Sbjct: 191 AQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEH---NQVSWNAMISGCTSNG 247

Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
                  LF RM        +  +LV+   A   L   + GK      E +     + ++
Sbjct: 248 LHLEAFDLFVRMKNGA-CTPNMYTLVSVSKAVGKLVDVNMGK------EVQNCASELGIE 300

Query: 279 -DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
            +V+   A++  YS+ GS  DA ++F      N  +N   W+A+I+GY+Q G   EAL++
Sbjct: 301 GNVLVGTALIDMYSKCGSLHDARSVFDT-NFINCGVNT-PWNAMISGYSQSGCSQEALEL 358

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI--- 394
           + QM   G+  ++ T  S+ +  A+  +L  G+  H   +K  L        DLMV+   
Sbjct: 359 YVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGL--------DLMVVSVN 410

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           NA+ D Y+KC  ++  R +FD +  + RD+ +WT ++ +YSQ+    +ALA F  M  ++
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRM--EERDIVSWTTLVTAYSQSSLGEEALATFCLM--RE 466

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
           +   PN FT S  L++CA L  L +GRQ+H  + +   +     + + LIDMY++ G I 
Sbjct: 467 EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTE-KCIESALIDMYAKCGSIT 525

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            A  VFD +   ++VSWT++++GY  HGL + A   F +M   G+  + VT L +L+ACS
Sbjct: 526 EAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACS 585

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           H GMV++GL YF  M   +G+    EHYACI+DLLGR  RLD+A+E I  MPMEP  ++W
Sbjct: 586 HGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVW 645

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             LL GCR+H NVELGE+AA ++L +  E   +Y LLSN Y   G ++D   +R++MK  
Sbjct: 646 QTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQ 705

Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           GVKK PG SW+  K     F+ GD+ HPQ ++IY  L  L ++IKAM  VP   F
Sbjct: 706 GVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIKAM--VPMGMF 758



 Score =  218 bits (556), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 266/538 (49%), Gaps = 26/538 (4%)

Query: 141 VLKACGELPSSRCGSSVHAVICSSGF-DSNVFVC-NALMAMYARCDTLSYARQLFDEMFQ 198
           VL+ C E  S R   +VH ++  S F D ++ V  N    +Y++C     A  +FDEM Q
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129

Query: 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
               ++ SW  ++    + G    G   F  M  +  +  D  +    + +C  L +   
Sbjct: 130 R---NVFSWTVMIVGSTEHGLFFDGFKFFCEML-NSGILPDKFAYSAIIQSCIGLDSLEL 185

Query: 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTW 318
           GK    M  A+ V         VS  +++  Y+++GS ED++ +F  M +     N V+W
Sbjct: 186 GK----MVHAQIVMRGFATHIFVS-TSLLNMYAKLGSIEDSYWVFNMMTEH----NQVSW 236

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +A+I+G    G   EA D+F +M+     PN+ TLVS+      +  + +GKE       
Sbjct: 237 NAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ--NCA 294

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
             L ++G    +++V  ALIDMY+KC S+  AR +FD           W  MI  YSQ+G
Sbjct: 295 SELGIEG----NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 350

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
            + +AL L+ QM Q    +  + +T      A A   +L+FGR +H  VL+   ++++  
Sbjct: 351 CSQEALELYVQMCQNG--ITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVS 408

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V N + D YS+ G ++  R VFD +++R++VSWT+L+T Y    LG++A   F  MR+EG
Sbjct: 409 VNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEG 468

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
            AP+  TF  +L +C+    ++ G +    + K  G+       + ++D+  +   + EA
Sbjct: 469 FAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKA-GLDTEKCIESALIDMYAKCGSITEA 527

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
            ++ + +   P  + W A+++G   H  VE   L   R +EL   K  + TLL  ++A
Sbjct: 528 GKVFDKIS-NPDIVSWTAIISGYAQHGLVE-DALQLFRRMELSGIKANAVTLLCVLFA 583



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 12/273 (4%)

Query: 347 EPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI-NALIDMYAKCK 405
           +  V  L+ +L  CA  G++   K  H   +K           DLMV+ N    +Y+KC 
Sbjct: 61  QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNF-----EDKDLMVLFNHAAHVYSKCS 115

Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
               A  +FD +    R+V +WTVMI   +++G   D    F +M     L  P+ F  S
Sbjct: 116 EFRAACGVFDEMP--QRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL--PDKFAYS 171

Query: 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525
             + +C  L +L  G+ +HA ++   +   I FV+  L++MY++ G I+ +  VF+ + +
Sbjct: 172 AIIQSCIGLDSLELGKMVHAQIVMRGFATHI-FVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585
            N VSW ++++G   +GL  +A   F +M+     P+  T + +  A      V+ G K 
Sbjct: 231 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG-KE 289

Query: 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
             + + E GI         ++D+  +   L +A
Sbjct: 290 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDA 322


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 329/541 (60%), Gaps = 14/541 (2%)

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353
           GS + A ++F++M +         ++ ++ G+ +  +  EAL  +++M   G++P+  T 
Sbjct: 36  GSMDYACSIFRQMDEPGS----FZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTY 91

Query: 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVM 413
            +LL  CA + A+  G + H + +K  L       +D+ V N+LI MY KC  + V   +
Sbjct: 92  PTLLKACARLPAVEEGMQVHAHILKLGLE------NDVFVQNSLISMYGKCGEIGVCCAV 145

Query: 414 FDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
           F+ +    R VA+W+ +I +++  G  +D L L   M  +       +  +S  L AC  
Sbjct: 146 FEQM--NERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVS-VLSACTH 202

Query: 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTS 533
           L AL  GR +H ++LRN    L   V   LI+MY + G +     +F  + ++N +S++ 
Sbjct: 203 LGALDLGRSVHGFLLRN-VSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSV 261

Query: 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593
           +++G  MHG G +    F +M ++GL PD + ++ +L ACSH+G+V +GL+ F+ M  E 
Sbjct: 262 MISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEH 321

Query: 594 GISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653
           GI    +HY C+VDL+GRA ++DEA+ELI+ MPMEP  ++W +LL+  ++H N++ GE+A
Sbjct: 322 GIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIA 381

Query: 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTAT 713
           A +L +L+S+K   Y +LSN+YA A RW+DVAR R+ M   G+ +RPG S V+ K     
Sbjct: 382 AKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHR 441

Query: 714 FFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALA 773
           F   D  HPQS+ +YE+L  +  ++K  GY P T+  L DVD+EEK   L  HS+KLA+A
Sbjct: 442 FVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIA 501

Query: 774 YGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGY 833
           Y ++ T+ G+P+RI +NLR+C DCH+    IS+I + EI +RD +RFHHFK+G+C+C+ Y
Sbjct: 502 YALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDY 561

Query: 834 W 834
           W
Sbjct: 562 W 562



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 173/365 (47%), Gaps = 18/365 (4%)

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
           F +N ++R  V+    + A   + +M  RG  PD +T+P +LKAC  LP+   G  VHA 
Sbjct: 54  FZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAH 113

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
           I   G +++VFV N+L++MY +C  +     +F++M +     + SW+ ++ A+A  G  
Sbjct: 114 ILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERS---VASWSALITAHASLGMW 170

Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
              L L   M+ +   + +   LV+ LSAC  LG    G+          +   +   +V
Sbjct: 171 SDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGF-----LLRNVSGLNV 225

Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
           +   +++  Y + G       LF+KM     K N +++S +I+G A  G+G E L +F +
Sbjct: 226 IVETSLIEMYLKCGXLYKGMCLFQKM----AKKNKLSYSVMISGLAMHGYGREGLRIFTE 281

Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           M   GLEP+ +  V +L+ C+  G  L+ +   C+   R+    G  P  +     ++D+
Sbjct: 282 MLEQGLEPDDIVYVGVLNACSHAG--LVQEGLQCFN--RMKLEHGIEP-TIQHYGCMVDL 336

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
             +   +D A  +  ++  +  DV   +++  S   N      +A   Q+F+ D     +
Sbjct: 337 MGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAA-KQLFKLDSQKASD 395

Query: 461 AFTLS 465
              LS
Sbjct: 396 YVVLS 400


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/766 (32%), Positives = 396/766 (51%), Gaps = 37/766 (4%)

Query: 73   LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
            +I+ Y      S A ++ +RI      V  WN ++  +   +        F  M+  G  
Sbjct: 376  IISMYAKCGFFSAAWTVFRRIRW-KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGID 434

Query: 133  PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD-SNVFVCNALMAMYARCDTLSYARQ 191
            P++ +F  +L AC    +   G  +H++I +   D     V   L++MY +C +++ A  
Sbjct: 435  PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAEL 494

Query: 192  LFDEMFQPGICDIVSWNTIVAAYAQ---SGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
            +F EM  P    +V+WN ++ AYAQ   S +A G LM    + G V    D +S  + LS
Sbjct: 495  VFKEMPLPSR-SLVTWNVMLGAYAQNDRSKEAFGALM--EMLQGGV--LPDALSFTSVLS 549

Query: 249  ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
            +C         + C ++E           +      A+++ + R    E A ++F +M  
Sbjct: 550  SCYCSQEAQVLRMC-ILESG--------YRSACLETALISMHGRCRELEQARSVFDEMDH 600

Query: 309  ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
             +V    V+W+A+++  A+     E   +FR+MQ  G+ P+  TL + L  C     L L
Sbjct: 601  GDV----VSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGL 656

Query: 369  GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
            GK  H    +  L  D      + V NAL++MY+ C     A   F+ +  K RD+ +W 
Sbjct: 657  GKIIHACVTEIGLEAD------IAVENALLNMYSNCGDWREALSFFETM--KARDLVSWN 708

Query: 429  VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            +M  +Y+Q G A +A+ LF  M  Q + VKP+  T S  L      A +  G+  H    
Sbjct: 709  IMSAAYAQAGLAKEAVLLFRHM--QLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAA 766

Query: 489  RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548
             +  +  +  VA  L+ +Y++ G +D A  +F    Q  VV   +++     HG  ++A 
Sbjct: 767  ESGLDSDVS-VATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAV 825

Query: 549  WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
              F +M++EG+ PD  T + ++ AC H+GMV++G   F +M + FGIS   EHYAC VDL
Sbjct: 826  KMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDL 885

Query: 609  LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668
            LGRA +L+ A ++I  MP E   ++W +LL  C++  + ELGE  A R+LEL+     ++
Sbjct: 886  LGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAH 945

Query: 669  TLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIY 728
             +LSNIY   G+WKD    R  +    VK  PG SW++  +    F  GDR+HPQ+ +IY
Sbjct: 946  VVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIY 1005

Query: 729  EILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRIT 788
             +L  L   ++  GY         D +DE K   L  HSE++A+A+G++ T P T ++I 
Sbjct: 1006 VVLDKLELLMRRAGYEADKGL---DAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIV 1062

Query: 789  KNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            KNLR+CGDCH+A  +ISMI+  EII+RDS RFHHF  G+C+CK  W
Sbjct: 1063 KNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 150/609 (24%), Positives = 285/609 (46%), Gaps = 31/609 (5%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           +I  Y    +P  A+++   I P    V W       A   R   +A R+F +M+ +   
Sbjct: 172 MINMYAKCGSPEDAIAVFLTI-PEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+  TF   L AC  L   R G+ +H+++  +G   +    NAL+ MY +C     A  +
Sbjct: 231 PNVITFITALGACTSL---RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGV 287

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M      D+VSWN +++A  ++G     + +F R+  +  ++ + V+L+  L+A A+
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLE-GMRPNSVTLITILNALAA 346

Query: 253 LGTWSRGKQCGMMEEAK-KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
            G        G   +   +++E   ++DVV  NA+++ Y++ G F  A+ +F+++R    
Sbjct: 347 SGV-----DFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRW--- 398

Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
           K +V++W+ ++     R    + ++ F  M   G++PN V+ +++L+ C++  AL  G++
Sbjct: 399 KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRK 458

Query: 372 THCYTIKRVLS-VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430
            H   + R    V+ S      V   L+ MY KC S+  A ++F  +   +R + TW VM
Sbjct: 459 IHSLILTRRRDYVESS------VATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVM 512

Query: 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN 490
           +G+Y+QN  + +A     +M Q   L  P+A + +  L +C      +  + +   +L +
Sbjct: 513 LGAYAQNDRSKEAFGALMEMLQGGVL--PDALSFTSVLSSC---YCSQEAQVLRMCILES 567

Query: 491 QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
            Y      +   LI M+ R  +++ AR VFD +   +VVSWT++++    +    + H  
Sbjct: 568 GYRS--ACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHL 625

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M+ EG+ PD  T    L  C  S  +  G K   +   E G+ A       ++++  
Sbjct: 626 FRRMQLEGVIPDKFTLATTLDTCLDSTTLGLG-KIIHACVTEIGLEADIAVENALLNMYS 684

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
                 EA+   E   M+   ++   +++     A +    +   R ++LE  K    T 
Sbjct: 685 NCGDWREALSFFE--TMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTF 742

Query: 671 LSNIYANAG 679
            + +  + G
Sbjct: 743 STTLNVSGG 751



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 178/668 (26%), Positives = 290/668 (43%), Gaps = 81/668 (12%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM-RRGW 131
           LI  YV   +   A ++  ++     +V  W ALI    +      AF LF  M+     
Sbjct: 66  LINMYVRCGSLEEAHAIFSKMEER--NVVSWTALISANAQSGAFARAFALFRTMLLESSA 123

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFD----SNVFVCNALMAMYARCDTLS 187
            P+ YT   +L AC        G S+HA+I   G +    +   V NA++ MYA+C +  
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPE 183

Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGD-AEGGLMLFARMTGDVKVQGDGVSLVNA 246
            A  +F  + +    D+VSW  +  AYAQ        L +F  M     +  + ++ + A
Sbjct: 184 DAIAVFLTIPEK---DVVSWTAMAGAYAQERRFYPDALRIFREMLLQ-PLAPNVITFITA 239

Query: 247 LSACASL--GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
           L AC SL  GTW       ++ EA   F      D ++ NA++  Y + G +E A+ +FK
Sbjct: 240 LGACTSLRDGTWLH----SLLHEAGLGF------DPLAGNALINMYGKCGDWEGAYGVFK 289

Query: 305 KM--RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362
            M  RQE   L++V+W+A+I+   + G   +A+ +FR+++  G+ PN VTL+++L+  A+
Sbjct: 290 AMASRQE---LDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA 346

Query: 363 VGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            G      ++ H     R+   +  +  D++V NA+I MYAKC     A  +F  I  K 
Sbjct: 347 SGVDFGAARKFH----GRIW--ESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKC 400

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
            DV +W  M+G+          +  F  M      + PN  +    L AC+   AL FGR
Sbjct: 401 -DVISWNTMLGASEDRKSFGKVVNTFHHMLLAG--IDPNKVSFIAILNACSNSEALDFGR 457

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN--LKQRNVVSWTSLMTGYG 539
           +IH+ +L  + + +   VA  L+ MY + G I  A +VF    L  R++V+W  ++  Y 
Sbjct: 458 KIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYA 517

Query: 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA--CSHSGMV------------------ 579
            +    +A  A  +M + G+ PD ++F  +L +  CS    V                  
Sbjct: 518 QNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETA 577

Query: 580 -----------DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME 628
                      +Q    FD M     +S     +  +V          E   L   M +E
Sbjct: 578 LISMHGRCRELEQARSVFDEMDHGDVVS-----WTAMVSATAENRDFKEVHHLFRRMQLE 632

Query: 629 ---PTPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIYANAGRWKDV 684
              P        L+ C     + LG++    + E+  E D      L N+Y+N G W++ 
Sbjct: 633 GVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREA 692

Query: 685 ARIRSLMK 692
                 MK
Sbjct: 693 LSFFETMK 700



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 250/511 (48%), Gaps = 31/511 (6%)

Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
           EYT   +L++C +      G   H +I ++G + ++F+ N L+ MY RC +L  A  +F 
Sbjct: 27  EYTA--LLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFS 84

Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
           +M +    ++VSW  +++A AQSG       LF  M  +     +  +LV  L+ACA+  
Sbjct: 85  KMEER---NVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 255 TWSRGKQC-GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
             + G+    M+ E     ER      +  NAM+  Y++ GS EDA A+F  + ++    
Sbjct: 142 DLAIGRSIHAMIWELG--LERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEK---- 195

Query: 314 NVVTWSAVIAGYAQ-RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372
           +VV+W+A+   YAQ R    +AL +FR+M    L PNV+T ++ L  C S   L  G   
Sbjct: 196 DVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWL 252

Query: 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMI 431
           H    +  L  D   P   +  NALI+MY KC   + A  +F A+A +   D+ +W  MI
Sbjct: 253 HSLLHEAGLGFD---P---LAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMI 306

Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG--RQIHAYVLR 489
            +  + G   DA+A+F ++  +   ++PN+ TL   L A A  + + FG  R+ H  +  
Sbjct: 307 SASVEAGRHGDAMAIFRRLRLEG--MRPNSVTLITILNALAA-SGVDFGAARKFHGRIWE 363

Query: 490 NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGMHGLGDKAH 548
           + Y +    V N +I MY++ G    A  VF  ++ + +V+SW +++          K  
Sbjct: 364 SGY-LRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVV 422

Query: 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608
             F  M   G+ P+ V+F+ +L ACS+S  +D G K    +         +     +V +
Sbjct: 423 NTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSM 482

Query: 609 LGRANRLDEAVELIEGMPMEPTPII-WVALL 638
            G+   + EA  + + MP+    ++ W  +L
Sbjct: 483 YGKCGSIAEAELVFKEMPLPSRSLVTWNVML 513


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/547 (37%), Positives = 326/547 (59%), Gaps = 20/547 (3%)

Query: 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343
           N ++  Y +     DA  LF +M Q NV    ++W+ +I+ Y++     +AL++   M  
Sbjct: 52  NVLINMYVKFNLLNDAHQLFDQMPQRNV----ISWTTMISAYSKCKIHQKALELLVLMLR 107

Query: 344 CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403
            G+ PNV T  S+L  C  +  +   +  HC  IK  L        D+ V +ALID++AK
Sbjct: 108 DGVRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLE------SDVYVRSALIDVFAK 158

Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
               + A  +FD +     D   W  +IG ++QN  ++ AL LF +M ++   +   A T
Sbjct: 159 LGEPEDALSVFDEMVTG--DAIVWNSIIGGFAQNSRSDVALELFKRM-KRAGFIAEQA-T 214

Query: 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523
           L+  L AC  LA L  G Q H ++++   ++++    N L+DMY + G ++ AR VF+ +
Sbjct: 215 LTSVLRACTGLALLELGMQAHVHIVKYDQDLILN---NALVDMYCKCGSLEDARRVFNQM 271

Query: 524 KQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583
           K+R+V++W+++++G   +G   +A   F+ M+  G  P+ +T + +L+ACSH+G+++ G 
Sbjct: 272 KERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGW 331

Query: 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643
            YF SM K +GI+   EHY C++DLLG+A +LD+AV+L+  M  EP  + W  LL  CR+
Sbjct: 332 YYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV 391

Query: 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703
             N+ L E AA +++ L+ E  G+YT+LSNIYAN+ +W  V  IR  M+  G+KK PGCS
Sbjct: 392 QRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCS 451

Query: 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           W++  +    F +GD +HPQ  ++ + L  L+ R+  +GYVP+T+F L D++ E+  D L
Sbjct: 452 WIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSL 511

Query: 764 FEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHF 823
             HSEKLALA+G++T      IRI KNLRICGDCH      S + N  I++RD  R+HHF
Sbjct: 512 RHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHF 571

Query: 824 KEGSCTC 830
           ++G C+C
Sbjct: 572 QDGKCSC 578



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 212/411 (51%), Gaps = 37/411 (9%)

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G   D  T+  ++K C    +   G+ +   +  +G    +F+ N L+ MY + + L+ A
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
            QLFD+M Q    +++SW T+++AY++    +  L L   M  D  V+ +  +  + L A
Sbjct: 68  HQLFDQMPQR---NVISWTTMISAYSKCKIHQKALELLVLMLRD-GVRPNVYTYSSVLRA 123

Query: 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
           C  +    R   CG+++E  +        DV   +A++  ++++G  EDA ++F +M   
Sbjct: 124 CNGMSD-VRMLHCGIIKEGLE-------SDVYVRSALIDVFAKLGEPEDALSVFDEM--- 172

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
            V  + + W+++I G+AQ      AL++F++M+  G      TL S+L  C  +  L LG
Sbjct: 173 -VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
            + H + +K        +  DL++ NAL+DMY KC S++ AR +F+ +  K RDV TW+ 
Sbjct: 232 MQAHVHIVK--------YDQDLILNNALVDMYCKCGSLEDARRVFNQM--KERDVITWST 281

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           MI   +QNG + +AL LF  M  +    KPN  T+   L AC+    L  G     Y  R
Sbjct: 282 MISGLAQNGYSQEALKLFELM--KSSGTKPNYITIVGVLFACSHAGLLEDG----WYYFR 335

Query: 490 NQYEM--LIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLM 535
           +  ++  + P   +  C+ID+  ++G +D A  + + ++ + + V+W +L+
Sbjct: 336 SMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 179/417 (42%), Gaps = 80/417 (19%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           LI  YV  N  + A  L  ++     +V  W  +I    + ++   A  L + M+R G  
Sbjct: 54  LINMYVKFNLLNDAHQLFDQMPQR--NVISWTTMISAYSKCKIHQKALELLVLMLRDGVR 111

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P+ YT+  VL+AC  +   R    +H  I   G +S+V+V +AL+ ++A+      A  +
Sbjct: 112 PNVYTYSSVLRACNGMSDVR---MLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSV 168

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSLVNALSAC 250
           FDEM      D + WN+I+  +AQ+  ++  L LF RM   G +  Q    +L + L AC
Sbjct: 169 FDEMVTG---DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQA---TLTSVLRAC 222

Query: 251 ASLGTWSRGKQ------------------------CGMMEEAKKVFERMKVKDVVSWNAM 286
             L     G Q                        CG +E+A++VF +MK +DV++W+ M
Sbjct: 223 TGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTM 282

Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM-QFCG 345
           ++G ++ G  ++A  LF+ M+    K N +T   V+   +  G   +    FR M +  G
Sbjct: 283 ISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG 342

Query: 346 L--------------------------------EPNVVTLVSLLSGCASVGALLLGKETH 373
           +                                EP+ VT  +LL  C     ++L +   
Sbjct: 343 INPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE--- 399

Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYA---KCKSVDVARVMFDAIAPKNRDVATW 427
            Y  K+V+++D   P+D      L ++YA   K  SV+  R     I  K     +W
Sbjct: 400 -YAAKKVIALD---PEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSW 452



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 120/272 (44%), Gaps = 42/272 (15%)

Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
           ++ T S  +  C    A+  G  I  ++  N ++ ++ F+ N LI+MY +   ++ A  +
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMM-FLVNVLINMYVKFNLLNDAHQL 70

Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----- 574
           FD + QRNV+SWT++++ Y    +  KA      M ++G+ P+  T+  +L AC+     
Sbjct: 71  FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV 130

Query: 575 ---HSGMVDQGLK------------------------YFDSMSKEFGISARAEHYACIVD 607
              H G++ +GL+                         FD M     ++  A  +  I+ 
Sbjct: 131 RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEM-----VTGDAIVWNSIIG 185

Query: 608 LLGRANRLDEAVELIEGMPME---PTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
              + +R D A+EL + M             ++L  C   A +ELG  A   +++ + + 
Sbjct: 186 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL 245

Query: 665 DGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
             +  L+ ++Y   G  +D  R+ + MK   V
Sbjct: 246 ILNNALV-DMYCKCGSLEDARRVFNQMKERDV 276


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/521 (40%), Positives = 306/521 (58%), Gaps = 16/521 (3%)

Query: 318 WSAVIAGYAQ-RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
           ++ +I  Y+Q R     +   +R M   G+ PN  T   +L GCA +G+L LGK  H   
Sbjct: 92  FNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCV 151

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVD---VARVMFDAIAPKNRDVATWTVMIGS 433
           +K          +D+ V+N LI MY  C   D    A  +FD  +PK  D  TW+ MI  
Sbjct: 152 VKF------GFEEDVHVLNTLIHMYC-CLGEDGFEFAEKVFDD-SPK-MDTVTWSAMIAG 202

Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE 493
           + + G ++ A+ LF +M  Q   V P+  T+   L ACA L AL  G+ + +YV +    
Sbjct: 203 FVRLGCSSRAVDLFREM--QVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIP 260

Query: 494 MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
             +  + N LIDM+++ G++D A  +F  +  R +VSWTS++ G  MHG G  A   FD+
Sbjct: 261 KSVE-LCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDE 319

Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
           M + G+ PD V F+ +L ACSHSG+VD+G  YF SM + F I  + EHY C+VDLL R  
Sbjct: 320 MVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGG 379

Query: 614 RLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673
            + EA E ++ MP EP  IIW  ++  C     ++LGE  +  L++ E   + +Y LLSN
Sbjct: 380 FVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSN 439

Query: 674 IYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733
           IYA   +W+   ++R +M   G+KK PG + ++       F  GD++H Q ++IYE++  
Sbjct: 440 IYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDE 499

Query: 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRI 793
           + + IK  GYVP TS  L D+D+E+K D L+ HSEKLA+A+ +L T PGT IRI KNLR+
Sbjct: 500 MGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRV 559

Query: 794 CGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           C DCHSA  FIS + N EI++RD NRFHHFK G C+C+ +W
Sbjct: 560 CEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 197/402 (49%), Gaps = 35/402 (8%)

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC--------DIVS 206
           + +HA I  +G  +N  +     +  +  +++ YA      +F P           D   
Sbjct: 35  TQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSF---LFPPSHTTSTPTPSYDAFL 91

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           +NT++ AY+Q+ D++    LF R      V  +  +    L  CA +G+   GK C    
Sbjct: 92  FNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGK-CVHGC 150

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
             K  FE    +DV   N ++  Y  +G  ED F   +K+  ++ K++ VTWSA+IAG+ 
Sbjct: 151 VVKFGFE----EDVHVLNTLIHMYCCLG--EDGFEFAEKVFDDSPKMDTVTWSAMIAGFV 204

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGS 386
           + G    A+D+FR+MQ  G+ P+ +T+VS+LS CA +GAL LGK    Y  K+ +     
Sbjct: 205 RLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNI----- 259

Query: 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALAL 446
            P  + + NALIDM+AKC +VD A  +F  +   +R + +WT +I   + +G   DA++L
Sbjct: 260 -PKSVELCNALIDMFAKCGNVDKAIKLFRQM--DSRTIVSWTSVIAGLAMHGRGLDAVSL 316

Query: 447 FPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN--CLI 504
           F +M +    + P+       L AC+    +  GR     + RN    ++P V +  C++
Sbjct: 317 FDEMVENG--ITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNF--SIVPKVEHYGCMV 372

Query: 505 DMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGD 545
           D+  R G +  A      +  + N + W +++T    H  G+
Sbjct: 373 DLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIIT--ACHATGE 412



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 176/344 (51%), Gaps = 26/344 (7%)

Query: 39  ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPP--SHLIAAYVSHNAPSPALSLL-----Q 91
           I +LL   C +L+++  IH  I+   L + P   +   +   + N+   A S L      
Sbjct: 20  ILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHT 79

Query: 92  RISPSP-FSVFWWNALIRRAVRLR-LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149
             +P+P +  F +N LIR   + R    N+F  +  M+R G  P+++TFPFVLK C  + 
Sbjct: 80  TSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIG 139

Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC---DTLSYARQLFDEMFQPGICDIVS 206
           S R G  VH  +   GF+ +V V N L+ MY  C   D   +A ++FD+   P + D V+
Sbjct: 140 SLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYC-CLGEDGFEFAEKVFDD--SPKM-DTVT 195

Query: 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMME 266
           W+ ++A + + G +   + LF  M   + V  D +++V+ LSACA LG    GK      
Sbjct: 196 WSAMIAGFVRLGCSSRAVDLFREMQV-MGVCPDEITMVSVLSACADLGALELGKWVESYV 254

Query: 267 EAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
           E K +      K V   NA++  +++ G+ + A  LF++M        +V+W++VIAG A
Sbjct: 255 EKKNI-----PKSVELCNALIDMFAKCGNVDKAIKLFRQMDSR----TIVSWTSVIAGLA 305

Query: 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGK 370
             G G +A+ +F +M   G+ P+ V  + +LS C+  G +  G+
Sbjct: 306 MHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGR 349



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 13/229 (5%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I   VRL     A  LF +M   G  PDE T   VL AC +L +   G  V + + 
Sbjct: 196 WSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVE 255

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
                 +V +CNAL+ M+A+C  +  A +LF +M       IVSW +++A  A  G    
Sbjct: 256 KKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSR---TIVSWTSVIAGLAMHGRGLD 312

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-QCGMMEEAKKVFERMKVKDVV 281
            + LF  M  +  +  D V+ +  LSAC+  G   +G+   G ME    +     V  V 
Sbjct: 313 AVSLFDEMVEN-GITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSI-----VPKVE 366

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
            +  MV    R G  ++AF   +KM  E    N + W  +I      G 
Sbjct: 367 HYGCMVDLLCRGGFVKEAFEFVQKMPFEP---NQIIWRTIITACHATGE 412


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/696 (33%), Positives = 373/696 (53%), Gaps = 82/696 (11%)

Query: 132 HPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
            P+     F      +   S     +H+ I  +G   + F+   ++++YA    +S A++
Sbjct: 28  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 87

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           +F+        +++ WN+I+ A    G  E  L ++ RM   + V  DG +    + ACA
Sbjct: 88  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMR-KLGVSADGFTFPLVIRACA 146

Query: 252 SLGT-----------------WS----------RGKQCGMMEEAKKVFERMKVKDVVSWN 284
            +G+                 W+           GK  G M++A+KVFERM V+  VSWN
Sbjct: 147 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGK-IGRMDDARKVFERMAVRSCVSWN 205

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
            MV+GY+       A  +F+ M    ++ N+VTW+++++ +A+ G   E +++F +M+  
Sbjct: 206 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 265

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G+      L  +LS    + A   GK  H Y +K      G   + L V N+LI +Y K 
Sbjct: 266 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVK------GGFENYLFVKNSLICLYGKH 319

Query: 405 KSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-------- 456
            +V+ AR++F  I  KN  + +W  +I SY+  G  ++A A+F Q+ + D+         
Sbjct: 320 GNVNAARILFLEIKTKN--IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVV 377

Query: 457 -----------------------------VKPNAFTLSCALMACARLAALRFGRQIHAYV 487
                                        VK N+ T++  L  CA LAAL  GR+IH +V
Sbjct: 378 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 437

Query: 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKA 547
           +R+  +  I  V N LI+MY++SG      +VF+ ++ ++++SW +++ GYG+HGLG+ A
Sbjct: 438 VRSLMDGNI-LVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENA 496

Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
              FDQM K+G  PDGVTF+ +L ACSH+G+V +G + FD M KEF +  + EHYAC+VD
Sbjct: 497 IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVD 556

Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
           LLGRA  L EA ++++ MP+EP   +W ALLN CR+H N E+ E  A+++  L SE  GS
Sbjct: 557 LLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGS 616

Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
           Y LLSNIYA +GRW+D A++R   K  G+KK PG SW+Q K+    F  G+  H + +++
Sbjct: 617 YMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEV 676

Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL 763
           Y IL  L  +++  GY+P       D+D+E++  LL
Sbjct: 677 YRILKDLGLQMEVEGYIP-------DIDEEQRSILL 705



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 162/580 (27%), Positives = 271/580 (46%), Gaps = 107/580 (18%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRI-SPSPFSVF 101
           LL+QC        IH QIIV   +H   + L A  VS  A    +S  QR+   SP   F
Sbjct: 40  LLQQCSKSHLSQQIHSQIIVTG-SH-RSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF 97

Query: 102 ----WWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157
                WN+++R  V     + A  ++ +M + G   D +TFP V++AC  + S +   SV
Sbjct: 98  SNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217
           H  +   GF  N+ V N LM MY +   +  AR++F+ M    +   VSWNT+V+ YA +
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM---AVRSCVSWNTMVSGYALN 214

Query: 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
            D  G   +F RM G   ++ + V+  + LS+ A         +CG   E  ++F RM++
Sbjct: 215 YDCHGASEMF-RMMGSAGLEPNLVTWTSLLSSHA---------RCGQHVETMELFGRMRM 264

Query: 278 K-----------------DVVSWN--AMVTGYSRIGSFED-------------------- 298
           +                 D+ +++   ++ GY   G FE+                    
Sbjct: 265 RGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNA 324

Query: 299 AFALFKKMRQENV-----------------------------------KLNVVTWSAVIA 323
           A  LF +++ +N+                                   + NVV+WSAVI 
Sbjct: 325 ARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIG 384

Query: 324 GYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383
           G+A +G G EAL++FR+MQ   ++ N VT+ S+LS CA + AL LG+E H + ++ ++  
Sbjct: 385 GFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLM-- 442

Query: 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
           DG    +++V N LI+MY K  S     ++F+ I  +N+D+ +W  M+  Y  +G   +A
Sbjct: 443 DG----NILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDLISWNTMVAGYGIHGLGENA 496

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANC 502
           +  F QM +     +P+  T    L AC+    +  GR++   +++  + E  +   A C
Sbjct: 497 IRTFDQMIKDG--FEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYA-C 553

Query: 503 LIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMH 541
           ++D+  R+G +  A  V  ++  + N   W +L+    MH
Sbjct: 554 MVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 593


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/717 (33%), Positives = 373/717 (52%), Gaps = 45/717 (6%)

Query: 133 PDEYTFPF-----VLKACGELPSSRCGSSVHA---VICSSGFDSNVFVCNALMAMYARCD 184
           P +  FP      +LK C      R G S+H    V   S    +V+  N+L+ +Y +C 
Sbjct: 24  PKKPLFPIDRLNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCG 83

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
               AR++FD M +    ++VSW  ++  Y  SG     L LF  M    + + +     
Sbjct: 84  ETVRARKVFDLMPER---NVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVAT 140

Query: 245 NALSACASLGTWSRGKQ-------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297
               +C+S G    GKQ        G+M      F R         N +V  YS      
Sbjct: 141 VVFKSCSSSGRIEEGKQFHGCFLKSGLMSHE---FVR---------NTLVYMYSLCSGNG 188

Query: 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357
           +A  +   +       ++  +S+ ++GY + G   E  +V R+M    L  + +T +S L
Sbjct: 189 EAIRVLDDLPY----CDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCL 244

Query: 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417
             C+++  L L ++ H   ++   +       ++    A+I+MY KC  V  A+ +FD  
Sbjct: 245 RLCSNLRDLNLARQIHSRMVRLGFN------SEVEASGAIINMYGKCGKVLYAQRVFDNT 298

Query: 418 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477
             +N  +   T ++ +Y Q+    +AL LF +M    K V PN +T + +L + A L+ L
Sbjct: 299 HAQN--IVLNTTIMDAYFQDKSFEEALNLFSKM--DTKEVPPNEYTFAISLNSIAELSLL 354

Query: 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTG 537
           + G  +H  VL++ Y   +  V N L++MY++SG I+ AR  F  +  R++V+W +++ G
Sbjct: 355 KHGDLLHGLVLKSGYRNHV-MVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICG 413

Query: 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597
           +  HGLG +   AFD+M   G  P+ +TF+ +L ACSH G V+QGL YF+ + K+F +  
Sbjct: 414 FSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQP 473

Query: 598 RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657
             +HY CIV LL +A    +A + +   P+E   + W ALLN C +  N  LG+  A   
Sbjct: 474 DLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYA 533

Query: 658 LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVG 717
           +       G Y LLSNI+A +  W+ VA +RSLM   GVKK PG SW+  +  T  F   
Sbjct: 534 IYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAE 593

Query: 718 DRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGIL 777
           +  HP+   IY  +  ++ +I+ +GY P  +   HDVD+E++ D L  HSEKLA+AYG++
Sbjct: 594 ENQHPEITLIYAKIKEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLM 653

Query: 778 TTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
            T   +P+ +TKN+RIC DCHSAI  IS I    I++RDSNRFHHF++G C+C  YW
Sbjct: 654 KTPENSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 18/217 (8%)

Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
           + A  LF +M  +   P+EYTF   L +  EL   + G  +H ++  SG+ ++V V NAL
Sbjct: 320 EEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNAL 379

Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDV 234
           + MYA+  ++  AR+ F  M      DIV+WNT++  ++  G    GL  F RM   G++
Sbjct: 380 VNMYAKSGSIEDARKAFSGM---TFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEI 436

Query: 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRI 293
               + ++ +  L AC+ +G   +G     +    ++ ++  V+ D+  +  +V   S+ 
Sbjct: 437 P---NRITFIGVLQACSHVGFVEQG-----LYYFNQLMKKFNVQPDLQHYTCIVGLLSKA 488

Query: 294 GSFEDAFALFKKMRQENVKLNVVTWSAVI-AGYAQRG 329
           G F+DA      MR   ++ +VV W A++ A Y +R 
Sbjct: 489 GMFKDAEDF---MRTAPIEWDVVAWRALLNACYVRRN 522


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 286/445 (64%), Gaps = 5/445 (1%)

Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
           +L+V+ A+I  Y++   V+ AR++FD +  K  D+  W+ MI  Y+++    +AL LF +
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEK--DLVCWSAMISGYAESDKPQEALNLFSE 70

Query: 450 MFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
           M  Q   +KP+  T+   + ACARL  L   + IH YV +N     +P V N LIDMY++
Sbjct: 71  M--QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALP-VNNALIDMYAK 127

Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
            G++  AR VF+ ++ RNV+SWTS++  + +HG    A   F QM+ E + P+GVTF+ +
Sbjct: 128 CGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGV 187

Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
           LYACSH+G+V++G + F SM+ E  I+ + EHY C+VDL GRAN L +A+EL+E MP+ P
Sbjct: 188 LYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAP 247

Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
             +IW +L+  C+IH   ELGE AA ++LELE + DG+   LSNIYA   RW+DV  +R+
Sbjct: 248 NVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRN 307

Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
           LMK  G+ K  GCS ++       F + D+ H Q+ KIYE L  +V+ +K +GY P T  
Sbjct: 308 LMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRS 367

Query: 750 ALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIIN 809
            L DV++E K +++  HSEKLAL YG++    G+ IRI KNLR+C DCH+ I  +S +  
Sbjct: 368 VLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYG 427

Query: 810 HEIILRDSNRFHHFKEGSCTCKGYW 834
            EII+RD  RFHH+K G C+C  YW
Sbjct: 428 MEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 186/331 (56%), Gaps = 19/331 (5%)

Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
           A+K+F ++  +++V   AM++GYSR+G  EDA  +F +M ++++    V WSA+I+GYA+
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDL----VCWSAMISGYAE 57

Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
                EAL++F +MQ  G++P+ VT++S++S CA +G L   K  H Y  K  L   G+ 
Sbjct: 58  SDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLG--GAL 115

Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
           P    V NALIDMYAKC ++  AR +F+ +  ++R+V +WT MI +++ +G A++AL  F
Sbjct: 116 P----VNNALIDMYAKCGNLGAARGVFEKM--QSRNVISWTSMINAFAIHGDASNALKFF 169

Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA-NCLIDM 506
            QM  +D+ +KPN  T    L AC+    +  GR+  A  + N++ +        C++D+
Sbjct: 170 YQM--KDENIKPNGVTFVGVLYACSHAGLVEEGRRTFAS-MTNEHNITPKHEHYGCMVDL 226

Query: 507 YSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565
           + R+  +  A  + + +    NVV W SLM    +HG  +   +A  Q+ +  L PD   
Sbjct: 227 FGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLE--LEPDHDG 284

Query: 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596
            LV L          Q +    ++ K+ GIS
Sbjct: 285 ALVQLSNIYAKDRRWQDVGELRNLMKQRGIS 315



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 23/252 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W+A+I        P  A  LF +M   G  PD+ T   V+ AC  L        +H  + 
Sbjct: 48  WSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVD 107

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G    + V NAL+ MYA+C  L  AR +F++M      +++SW +++ A+A  GDA  
Sbjct: 108 KNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSR---NVISWTSMINAFAIHGDASN 164

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            L  F +M  D  ++ +GV+ V  L AC+           G++EE ++ F  M  +  ++
Sbjct: 165 ALKFFYQMK-DENIKPNGVTFVGVLYACS---------HAGLVEEGRRTFASMTNEHNIT 214

Query: 283 -----WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
                +  MV  + R     DA  L + M    +  NVV W +++A  A + HG   L  
Sbjct: 215 PKHEHYGCMVDLFGRANLLRDALELVETM---PLAPNVVIWGSLMA--ACQIHGENELGE 269

Query: 338 FRQMQFCGLEPN 349
           F   Q   LEP+
Sbjct: 270 FAAKQVLELEPD 281



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 13/204 (6%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           N+ V  A+++ Y+R   +  AR +FD+M +    D+V W+ +++ YA+S   +  L LF+
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEK---DLVCWSAMISGYAESDKPQEALNLFS 69

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
            M     ++ D V++++ +SACA LG   R K   M  +   +   + V      NA++ 
Sbjct: 70  EMQV-FGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVN-----NALID 123

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y++ G+   A  +F+KM+  NV    ++W+++I  +A  G    AL  F QM+   ++P
Sbjct: 124 MYAKCGNLGAARGVFEKMQSRNV----ISWTSMINAFAIHGDASNALKFFYQMKDENIKP 179

Query: 349 NVVTLVSLLSGCASVGALLLGKET 372
           N VT V +L  C+  G +  G+ T
Sbjct: 180 NGVTFVGVLYACSHAGLVEEGRRT 203


>gi|302799324|ref|XP_002981421.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
 gi|300150961|gb|EFJ17609.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
          Length = 789

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 270/804 (33%), Positives = 422/804 (52%), Gaps = 47/804 (5%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL-THVPPS-HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           L+ +  SL Q   IH+++I      H+  S HL+  Y    +   A  LL R+     + 
Sbjct: 21  LVDESTSLEQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRR--NA 78

Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
             WNA+IR   +      +   F +M++ G  PD   F  ++KA   +     G  V   
Sbjct: 79  LSWNAVIRANAQAGDFPRSLLFFQRMLQDGSLPDAVVFLSLIKAPRTIQE---GEIVQEF 135

Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
              SGFD +  V  AL+ MY RC  L  A+  FD + + G+   VSWN ++  Y++  + 
Sbjct: 136 AEKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGV---VSWNALITVYSRGDEK 192

Query: 221 EGGLMLFARMTGDVKVQG---DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277
           E  L +F  M     +QG   + V+++   SA A  G  ++   CG +  +  +   +  
Sbjct: 193 EQSLRVFREML----LQGIAPNAVTIICIASAVA--GIAAKITTCGNLIHSCSIDSGLIS 246

Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
              V+ N+++  + R G+   A  +F+KM + +V     +W+ +I+ +AQ GH   ALD+
Sbjct: 247 VTTVA-NSIINLFGRGGNITRANDIFEKMDRRDV----CSWNTMISAFAQNGHSSGALDL 301

Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
           + +M    + P+ VT V++L  C     L  G+  H     R +   G +  DL+V  AL
Sbjct: 302 YGRMT---IRPDGVTFVNVLEACDCPDDLERGESIH-----RDVRAHG-YDSDLIVATAL 352

Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
           + MY +C  +D A  +F AI  ++  V T   +I +++Q G A+ +L  F QM Q    +
Sbjct: 353 VSMYRRCGRLDRAAEVFAAI--QHPGVITLNAIIAAHAQFGRADGSLLHFRQMLQLG--I 408

Query: 458 KPNAFTLSCALMACARLAALRFG-RQIHAYVLR-----NQYEMLIPFVANCLIDMYSRSG 511
           +P+ FTL   L ACA   A     R +H ++       + +++L   V N L++MY++ G
Sbjct: 409 RPSKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPHDIL---VRNALVNMYAKCG 465

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
           D+D AR +FD   Q NV +W ++M GY  HG  + A     +M+  G++PD ++F   L 
Sbjct: 466 DLDAARGIFDAAPQGNVSTWNAIMAGYAQHGYANMAVRLLYEMQLAGISPDPISFTAALS 525

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP 631
           A SH+  V+ G + F ++S+++G+    EHY  +VDLLGRA  L+EA   +  M +    
Sbjct: 526 ASSHARQVEDGARIFYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFLRSMAIAADA 585

Query: 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691
             W+ALL  CRIH + +    AA  ++ ++     SYT+LSN+Y+ AGRW +   IR  M
Sbjct: 586 AAWMALLGACRIHKDQDRAMRAAEAIVAIDPSHGASYTVLSNVYSAAGRWDEAEEIRRRM 645

Query: 692 KHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA-MGYVPQTSFA 750
              G +K PG SW++ K     F V DR+HP++ +IYE L  L   +K+   YVP     
Sbjct: 646 SENGARKEPGRSWIEVKNRVHEFAVKDRSHPRTGEIYERLDELRVVLKSEEDYVPDVGSV 705

Query: 751 LHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINH 810
           LHDV+DE + +LL+ HSEKLAL +G++ T  G+ I I KNLRIC DCH  +   S     
Sbjct: 706 LHDVEDEHRENLLWHHSEKLALGFGLIGTKEGSKITIIKNLRICEDCHVVMKLTSKNTKR 765

Query: 811 EIILRDSNRFHHFKEGSCTCKGYW 834
           EI++RD  RFHHF  G+C+C   W
Sbjct: 766 EIVVRDCYRFHHFNGGACSCSDCW 789


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 273/804 (33%), Positives = 397/804 (49%), Gaps = 119/804 (14%)

Query: 15  TPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPS--- 71
           TPLT N  F++    S+ T+    +  L    C +L+Q   +H   ++     +P S   
Sbjct: 16  TPLTKNTHFSSFFSTSLQTSNPPNLLQLC-TLCDTLSQTKQVHAYSLLHGF--LPRSVSL 72

Query: 72  --HLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
              LI  Y S   PS +L L Q       S F WN LIR A  +    + F  +  M+R 
Sbjct: 73  CASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIR-ANSIAGVFDGFGTYNTMVRA 131

Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
           G  PDE T+PFVLK C +    R G  VH V    GFD +VFV N L+A Y  C     A
Sbjct: 132 GVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDA 191

Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-GDVKVQGDGVSLVNALS 248
            ++FDEM +    D VSWNT++   +  G  E  L  F  M      +Q D V++V+ L 
Sbjct: 192 MKVFDEMPER---DKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLP 248

Query: 249 ACASL--------------------GTWSRGK-------QCGMMEEAKKVFERMKVKDVV 281
            CA                      G    G        +CG  + +KKVF+ +  ++V+
Sbjct: 249 VCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVI 308

Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWS---------------------- 319
           SWNA++T +S  G + DA  +F+ M  E ++ N VT S                      
Sbjct: 309 SWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFS 368

Query: 320 -------------AVIAGYAQRGHGHEALDVFRQM------------------------- 341
                        ++I  YA+ G    A  +F +M                         
Sbjct: 369 LKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAV 428

Query: 342 ------QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395
                 Q  G  PN VT  ++L  CA +G L +GKE H     R++ V  S   DL V N
Sbjct: 429 ELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHA----RIIRVGSSL--DLFVSN 482

Query: 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455
           AL DMY+KC  +++A+ +F+      RD  ++ ++I  YS+   + ++L LF +M     
Sbjct: 483 ALTDMYSKCGCLNLAQNVFNISV---RDEVSYNILIIGYSRTNDSLESLRLFSEMRLLG- 538

Query: 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515
            ++P+  +    + ACA LA +R G++IH  ++R  +   + FVAN L+D+Y+R G ID 
Sbjct: 539 -MRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHL-FVANSLLDLYTRCGRIDL 596

Query: 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
           A  VF  ++ ++V SW +++ GYGM G  D A   F+ M+++G+  D V+F+ +L ACSH
Sbjct: 597 ATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSH 656

Query: 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635
            G++++G KYF  M  +  I     HYAC+VDLLGRA  ++EA +LI G+ + P   IW 
Sbjct: 657 GGLIEKGRKYFKMMC-DLNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWG 715

Query: 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695
           ALL  CRIH N+ELG  AA  L EL+ +  G Y LLSN+YA A RW +  ++R LMK  G
Sbjct: 716 ALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRG 775

Query: 696 VKKRPGCSWVQGKEGTATFFVGDR 719
            KK PGCSWVQ  +    F VG++
Sbjct: 776 AKKNPGCSWVQVGDLVHAFLVGEK 799


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 316/533 (59%), Gaps = 12/533 (2%)

Query: 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
           L  ++ +E+ + +  TWS+VI+ +AQ      A+  F +M    L P+     S    CA
Sbjct: 107 LSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACA 166

Query: 362 SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421
            +G   +GK  HC  IK    VD      + V ++L+DMYAKC  +  AR +FD +   +
Sbjct: 167 ILGRCDVGKSVHCLVIKTGYDVD------VFVGSSLVDMYAKCGDIKEARNVFDEMP--H 218

Query: 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGR 481
           R+V +W+ MI  Y+Q G   +A+ LF +   +   +  N FTLS  +  C     L  G+
Sbjct: 219 RNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEG--LDVNDFTLSSVIRVCGSATLLELGK 276

Query: 482 QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH 541
           QIH    +  Y+ L  FV + LI +YS+ G I+ A  VFD +  +N+  W +++     H
Sbjct: 277 QIHGLCFKTSYD-LSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQH 335

Query: 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH 601
               +A   F +M   G+ P+ +TFL +LYACSH+G+V++G KYF ++ K++ I    +H
Sbjct: 336 AHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYF-ALMKKYEIEPGTQH 394

Query: 602 YACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661
           YA +VDLLGRA +L EA+ +I+GMP EPT  +W A + GCRIH N +L   AA+++ EL 
Sbjct: 395 YASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELG 454

Query: 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTH 721
           +   G + +LSN YA AGR++D A+ R +++  GVKK  G SW++       F  GDR H
Sbjct: 455 AVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFH 514

Query: 722 PQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAP 781
            + ++IY+ L  L + ++  GYV  TSF L +V  EEK   +  HSE+LA+A+G+++   
Sbjct: 515 VRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPL 574

Query: 782 GTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           G PIRI KNLR+CGDCH+AI FIS +    II+RD+NRFH F++G C+C  YW
Sbjct: 575 GRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 162/361 (44%), Gaps = 42/361 (11%)

Query: 39  ITSLLLRQCKS--LTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRIS 94
           I  LLL Q +S  L +   IH  II   L  +P    +LI  Y     P  +  + +   
Sbjct: 57  ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116

Query: 95  PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG 154
               +   W+++I    +   P  A + F +M+     PD++ FP   KAC  L     G
Sbjct: 117 RKSSTT--WSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVG 174

Query: 155 SSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            SVH ++  +G+D +VFV ++L+ MYA+C  +  AR +FDEM      ++VSW+ ++  Y
Sbjct: 175 KSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHR---NVVSWSGMIYGY 231

Query: 215 AQSGDAEGGLMLF--ARMTG-DVKVQGDGVSLVNALSACASLGTWSRGKQ---------- 261
            Q G+ E  + LF  A + G DV    +  +L + +  C S      GKQ          
Sbjct: 232 TQLGEHEEAMRLFKEALLEGLDV----NDFTLSSVIRVCGSATLLELGKQIHGLCFKTSY 287

Query: 262 ----------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                           CG++E A +VF+ + +K++  WNAM+   ++    ++AF LF K
Sbjct: 288 DLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTK 347

Query: 306 MRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365
           M    ++ N +T+  V+   +  G   E    F  M+   +EP      S++      G 
Sbjct: 348 MENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGK 407

Query: 366 L 366
           L
Sbjct: 408 L 408



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
           L++  R  +L  G+QIHA+++++  + +IP V + LI+ YS++     +  VF+  ++++
Sbjct: 61  LLSQTRSRSLLKGQQIHAHIIKSGLQ-VIPLVCHYLINFYSKTQLPLLSSQVFEESERKS 119

Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
             +W+S+++ +  +     A   F +M  E L PD   F     AC+  G  D G K   
Sbjct: 120 STTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVG-KSVH 178

Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            +  + G        + +VD+  +   + EA  + + MP     + W  ++ G
Sbjct: 179 CLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNV-VSWSGMIYG 230


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/784 (31%), Positives = 406/784 (51%), Gaps = 100/784 (12%)

Query: 71   SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRG 130
            + L+  Y   + P  A+ L  R+     +VF W A++    R+   ++A   F++M   G
Sbjct: 1215 TKLVVFYAKCDFPEVAVRLFHRLRVR--NVFSWAAIVGLQCRMGFSEDALLGFIEMQENG 1272

Query: 131  WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYAR 190
              PD +  P VLKACG L     G  VH  +   GF + VFV ++L+ MY +C  L  AR
Sbjct: 1273 VFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDAR 1332

Query: 191  QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG---DGVSLVNAL 247
            ++FD M +    ++V+WN+++  Y Q+G  +  + +F     D++V+G     V++ + L
Sbjct: 1333 KVFDSMVEK---NVVTWNSMIVGYVQNGLNQEAIDVFY----DMRVEGIEPTRVTVASFL 1385

Query: 248  SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
            SA A+L     GKQ      A  +   + + +++  ++++  YS++G  EDA  +F +M 
Sbjct: 1386 SASANLDALIEGKQG----HAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRML 1440

Query: 308  QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
            +++V    VTW+ +I+ Y Q     +AL++   M+   L  + VTL S+LS  A    + 
Sbjct: 1441 EKDV----VTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIK 1496

Query: 368  LGKETHCYTIKRVLS-------------------------VDGSHPDDLMVINALIDMYA 402
            LGKE HCY I+R L                           D +   DL++ N L+  YA
Sbjct: 1497 LGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYA 1556

Query: 403  KCKSVDVA-----RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM------- 450
            +      A     ++ FD++ P   +V +W  +I  + +NG  N+A  +F QM       
Sbjct: 1557 QVGLSGEALKLFYQMQFDSVPP---NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQP 1613

Query: 451  ------------------------FQ--QDKLVKPNAFTLSCALMACARLAALRFGRQIH 484
                                    FQ  Q+  ++P+  +++  L+AC  + +L +GR IH
Sbjct: 1614 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 1673

Query: 485  AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLG 544
             ++ R+++ + +P VA  L+DMY++ G ID A+ VF  +  + +  + ++++ Y +HG  
Sbjct: 1674 GFITRHEFCLSVP-VATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQA 1732

Query: 545  DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
             +A   F  ++KEG+ PD +TF  +L ACSH+G+V++GL  F  M  +  ++   EHY C
Sbjct: 1733 VEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGC 1792

Query: 605  IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664
            +V LL R   LDEA+ LI  MP +P   I  +LL  CR H  +ELGE  +  L +LE   
Sbjct: 1793 VVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSN 1852

Query: 665  DGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQS 724
             G+Y  LSN YA AGRW +V+ +R LMK  G++K PGCSW+Q       F  GD +HP++
Sbjct: 1853 SGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKT 1912

Query: 725  QKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTP 784
            ++IY +LA L+  ++ MGYVP  S       +EE    L   ++KL   Y +      TP
Sbjct: 1913 EEIYAMLAMLLSEMRFMGYVPIAS-------NEEN---LCSRAQKLLCKYAV--ELEHTP 1960

Query: 785  IRIT 788
            I+I+
Sbjct: 1961 IKIS 1964



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 164/639 (25%), Positives = 270/639 (42%), Gaps = 161/639 (25%)

Query: 141  VLKACGELPSSRCGSSVHAVICSSG--FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198
            +L+ C    +   G  +HA I  +G  F  N +V   L+  YA+CD    A +LF  +  
Sbjct: 1180 LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRL-- 1237

Query: 199  PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258
              + ++ SW  IV    + G +E  L+ F  M  +  V  D   L N L AC SL     
Sbjct: 1238 -RVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQEN-GVFPDNFVLPNVLKACGSLQLIGL 1295

Query: 259  GK--------------------------QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
            GK                          +CG++E+A+KVF+ M  K+VV+WN+M+ GY +
Sbjct: 1296 GKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQ 1355

Query: 293  IGSFEDAFALFKKMRQENVK-----------------------------------LNVVT 317
             G  ++A  +F  MR E ++                                   L+ + 
Sbjct: 1356 NGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNIL 1415

Query: 318  WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV-------------------------- 351
             S++I  Y++ G   +A  VF +M    LE +VV                          
Sbjct: 1416 GSSIINFYSKVGLIEDAELVFSRM----LEKDVVTWNLLISSYVQHHQVGKALNMCHLMR 1471

Query: 352  ---------TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYA 402
                     TL S+LS  A    + LGKE HCY I+R L        D++V N++IDMYA
Sbjct: 1472 SENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLE------SDVVVANSIIDMYA 1525

Query: 403  KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF 462
            KC+ +D AR +FD+     RD+  W  ++ +Y+Q G + +AL LF QM  Q   V PN  
Sbjct: 1526 KCERIDDARKVFDSTT--ERDLVLWNTLLAAYAQVGLSGEALKLFYQM--QFDSVPPNVI 1581

Query: 463  TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
            +                                     N +I  + R+G ++ A+ +F  
Sbjct: 1582 SW------------------------------------NSVILGFLRNGQVNEAKDMFSQ 1605

Query: 523  LK----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
            ++    Q N+++WT+L++G    G G +A   F +M++ G+ P   +   +L AC+    
Sbjct: 1606 MQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPS 1665

Query: 579  VDQGLKYFDSMSK-EFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
            +  G      +++ EF +S        +VD+  +   +DEA ++   M  +  P I+ A+
Sbjct: 1666 LWYGRAIHGFITRHEFCLSVPVA--TSLVDMYAKCGSIDEAKKVFHMMSSKELP-IYNAM 1722

Query: 638  LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676
            ++   +H    +  LA  + L+ E  +  S T  S + A
Sbjct: 1723 ISAYALHGQA-VEALALFKHLQKEGIEPDSITFTSILSA 1760



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 113/254 (44%), Gaps = 9/254 (3%)

Query: 392  MVINALIDMYAKCKSVDVARVMFDAIAPKNRD----VATWTVMIGSYSQNGGANDALALF 447
            MV+     ++A  KS   A      +  K+ +      ++   I S  ++G   +++ L 
Sbjct: 1103 MVLIGFNVLFASVKSSKFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHLQESVHLL 1162

Query: 448  PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDM 506
             +M  +D  + P  +     L  C    AL  G+QIHA +L+N  +     +V   L+  
Sbjct: 1163 SEMEFEDFQIGPEIY--GELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVF 1220

Query: 507  YSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566
            Y++    + A  +F  L+ RNV SW +++      G  + A   F +M++ G+ PD    
Sbjct: 1221 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVL 1280

Query: 567  LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626
              +L AC    ++  G K       + G  A     + +VD+ G+   L++A ++ + M 
Sbjct: 1281 PNVLKACGSLQLIGLG-KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSM- 1338

Query: 627  MEPTPIIWVALLNG 640
            +E   + W +++ G
Sbjct: 1339 VEKNVVTWNSMIVG 1352


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 344/588 (58%), Gaps = 47/588 (7%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G+  +A++ F+ + VKD V+W  +++G +++G   D   L     Q  V+ +V++W+++I
Sbjct: 156 GLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLS---QAPVR-DVISWTSLI 211

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A Y++     EA+  F+ M   G+ P+ VT++++LS CA +  L LG+  H      +L 
Sbjct: 212 AAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH------LLV 265

Query: 383 VDGSHPDDLMVINALIDMYAKCKS--------------------------------VDVA 410
            +   P    ++ ALIDMYAKC                                  VDVA
Sbjct: 266 EEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVA 325

Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
           R +FD +  + RD+ T+  M+  Y  +G   +AL LF  M + D  ++ + FT+   L A
Sbjct: 326 RSLFDEM--EVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD--LRVDNFTVVNLLTA 381

Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
           CA L AL+ GR +HA + +   E  I ++   L+DMY + G +D A +VF  + +R+V +
Sbjct: 382 CASLGALQQGRALHACIEQRLVEADI-YLGTALLDMYMKCGRVDEATIVFQRMGKRDVHT 440

Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
           WT+++ G   +G+G  A   F QMR +G  P+ V+++ +L ACSHS ++++G  YFD M 
Sbjct: 441 WTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMR 500

Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
             + I  + EHY C++DLLGR+  LDEA++L++ MP++P  +IW ++L+ CR+H +++L 
Sbjct: 501 ILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560

Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
           + AA  LL+LE ++DG Y  L NIY ++ +W++ ++IR LM+   VKK  G S +     
Sbjct: 561 QCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQ 620

Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
              F V D++HP+  +I  +L  +  R+K++GY P TS    DVD+EEK   L  HSEKL
Sbjct: 621 VHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKL 680

Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           A+A+G++  AP  P+ I KNLR+C DCHSAI  IS + N EII+RD +
Sbjct: 681 AIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRS 728


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/500 (41%), Positives = 316/500 (63%), Gaps = 16/500 (3%)

Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
           +C  +  AK++F+ M  +D+ SWN M++GY++ G  ++A  LF +M + +      +W+A
Sbjct: 136 KCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDN----FSWTA 191

Query: 321 VIAGYAQRGHGHEALDVFRQMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
           + +GY +     EAL++FR MQ     + N  T+ S L+  A++ +L LGKE H + ++ 
Sbjct: 192 MTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRI 251

Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
            L +DG      +V +AL DMY KC S+  AR +FD     +RDV +WT MI  Y + G 
Sbjct: 252 GLDLDG------VVWSALSDMYGKCGSIGEARHIFDKTV--DRDVVSWTAMIDRYFKEGR 303

Query: 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499
             +  ALF  + +    + PN FT S  L ACA  AA   G+Q+H Y+ R  ++    F 
Sbjct: 304 REEGFALFSDLLKSG--IWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDP-SSFA 360

Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
           A+ L+ MY++ G+I  AR VF+ + + ++VSWTSL++GY  +G  D+A   F+ + K G 
Sbjct: 361 ASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGT 420

Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
            PD +TF+ +L AC+H+G+VD+GL+YFDS+ ++ G++  A+HYAC++DLL R+ RL EA 
Sbjct: 421 QPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAE 480

Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
           ++I+ MP+EP   +W +LL GCRIH N++L + AA  L E+E E   +YT L+NIYA AG
Sbjct: 481 DIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAG 540

Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
            W  VA +R +M   GV K+PG SW++ K     F VGD +H +S++I+E L  L +R+K
Sbjct: 541 LWGGVAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMK 600

Query: 740 AMGYVPQTSFALHDVDDEEK 759
             GYVP T+F LHDV++E+K
Sbjct: 601 EEGYVPDTNFVLHDVEEEQK 620



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 219/512 (42%), Gaps = 77/512 (15%)

Query: 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGF 166
            + A+ +       R  +Q++     P   T+  +L+ C +L +   G  VHA   +SGF
Sbjct: 61  FKEAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGF 120

Query: 167 DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226
              V + N ++ MY +C++L  A++LFDEM +  +C   SWN +++ YA++G  +    L
Sbjct: 121 VPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLC---SWNIMISGYAKAGRLQEARKL 177

Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK-------- 278
           F +MT             +  S  A    + R  Q    EEA ++F  M+          
Sbjct: 178 FDQMTER-----------DNFSWTAMTSGYVRHDQ---HEEALELFRAMQRHENFKCNKF 223

Query: 279 --------------------------------DVVSWNAMVTGYSRIGSFEDAFALFKKM 306
                                           D V W+A+   Y + GS  +A  +F K 
Sbjct: 224 TMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDK- 282

Query: 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
               V  +VV+W+A+I  Y + G   E   +F  +   G+ PN  T   +L+ CA   A 
Sbjct: 283 ---TVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAE 339

Query: 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426
            LGK+ H Y  +  +  D S        + L+ MY KC ++  AR +F+ + P+  D+ +
Sbjct: 340 ELGKQVHGYMTR--IGFDPSS----FAASTLVHMYTKCGNIKNARRVFNGM-PRP-DLVS 391

Query: 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486
           WT +I  Y+QNG  ++AL  F  + +     +P+  T    L AC     +  G +    
Sbjct: 392 WTSLISGYAQNGQPDEALQFFELLLKSG--TQPDHITFVGVLSACTHAGLVDKGLEYFDS 449

Query: 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG--- 542
           +              CLID+ SRSG +  A  + D +  + +   W SL+ G  +HG   
Sbjct: 450 IKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLK 509

Query: 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
           L  +A  A  ++  E   P   T L  +YA +
Sbjct: 510 LAKRAAEALFEIEPEN--PATYTTLANIYATA 539



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 151/323 (46%), Gaps = 41/323 (12%)

Query: 348 PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407
           P+  T  +LL  C  + AL  G + H +T        G  P  +++ N ++DMY KC S+
Sbjct: 87  PSAATYSTLLQLCLQLRALDEGMKVHAHT-----KTSGFVPG-VVISNRILDMYIKCNSL 140

Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL----------- 456
             A+ +FD +A   RD+ +W +MI  Y++ G   +A  LF QM ++D             
Sbjct: 141 VNAKRLFDEMA--ERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVR 198

Query: 457 -------------------VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
                               K N FT+S AL A A + +L  G++IH ++LR   + L  
Sbjct: 199 HDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLD-LDG 257

Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557
            V + L DMY + G I  AR +FD    R+VVSWT+++  Y   G  ++    F  + K 
Sbjct: 258 VVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKS 317

Query: 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617
           G+ P+  TF  +L AC+     + G +    M++  G    +   + +V +  +   +  
Sbjct: 318 GIWPNEFTFSGVLNACADHAAEELGKQVHGYMTR-IGFDPSSFAASTLVHMYTKCGNIKN 376

Query: 618 AVELIEGMPMEPTPIIWVALLNG 640
           A  +  GMP  P  + W +L++G
Sbjct: 377 ARRVFNGMP-RPDLVSWTSLISG 398



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 129/271 (47%), Gaps = 24/271 (8%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  W A+I R  +    +  F LF  +++ G  P+E+TF  VL AC +  +   G  VH 
Sbjct: 288 VVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHG 347

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   GFD + F  + L+ MY +C  +  AR++F+ M +P   D+VSW ++++ YAQ+G 
Sbjct: 348 YMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRP---DLVSWTSLISGYAQNGQ 404

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
            +  L  F  +      Q D ++ V  LSAC            G++++  + F+ +K K 
Sbjct: 405 PDEALQFFELLLKS-GTQPDHITFVGVLSACT---------HAGLVDKGLEYFDSIKEKH 454

Query: 280 VVSWNA-----MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            ++  A     ++   SR G  ++A  +  KM  E  K     W++++ G   R HG+  
Sbjct: 455 GLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKF---LWASLLGGC--RIHGNLK 509

Query: 335 LDVFRQMQFCGLEP-NVVTLVSLLSGCASVG 364
           L          +EP N  T  +L +  A+ G
Sbjct: 510 LAKRAAEALFEIEPENPATYTTLANIYATAG 540



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 170/424 (40%), Gaps = 81/424 (19%)

Query: 17  LTLNHLFTNIKLFSVTTT----PCIKITSLLLR---QCKSLTQVYLIHQQIIVQNLTHVP 69
           L L  L   +K+ + T T    P + I++ +L    +C SL     +  ++  ++L    
Sbjct: 100 LQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDL--CS 157

Query: 70  PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMR- 128
            + +I+ Y        A  L  +++      F W A+    VR    + A  LF  M R 
Sbjct: 158 WNIMISGYAKAGRLQEARKLFDQMTER--DNFSWTAMTSGYVRHDQHEEALELFRAMQRH 215

Query: 129 RGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSY 188
             +  +++T    L A   + S   G  +H  I   G D +  V +AL  MY +C ++  
Sbjct: 216 ENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGE 275

Query: 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248
           AR +FD+       D+VSW  ++  Y + G  E G  LF+ +     +  +  +    L+
Sbjct: 276 ARHIFDKTVDR---DVVSWTAMIDRYFKEGRREEGFALFSDLLKS-GIWPNEFTFSGVLN 331

Query: 249 ACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVS 282
           ACA       GKQ                          CG ++ A++VF  M   D+VS
Sbjct: 332 ACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVS 391

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI-----AGYAQRG-------- 329
           W ++++GY++ G  ++A   F+ + +   + + +T+  V+     AG   +G        
Sbjct: 392 WTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIK 451

Query: 330 --HG---------------------HEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366
             HG                      EA D+  +M    +EP+     SLL GC   G L
Sbjct: 452 EKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMP---IEPDKFLWASLLGGCRIHGNL 508

Query: 367 LLGK 370
            L K
Sbjct: 509 KLAK 512



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 16/153 (10%)

Query: 454 DKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP--FVANCLIDMYSRSG 511
           D + +P+A T S  L  C +L AL  G ++HA+   + +   +P   ++N ++DMY +  
Sbjct: 82  DHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGF---VPGVVISNRILDMYIKCN 138

Query: 512 DIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
            +  A+ +FD + +R++ SW  +++GY   G   +A   FDQM +     D  ++  +  
Sbjct: 139 SLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTER----DNFSWTAMTS 194

Query: 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604
                   ++ L+ F +M        R E++ C
Sbjct: 195 GYVRHDQHEEALELFRAMQ-------RHENFKC 220


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 369/701 (52%), Gaps = 89/701 (12%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D   F  +L  C +  S      VHA I  + F S +F+ N L+ +Y +C  L  AR++F
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 194 DEMFQPGI------------------------C----DIVSWNTIVAAYAQSGDAEGGLM 225
           D M Q                           C    D  SWN +V+ +AQ    E  L 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWN 284
               M  +  V  +  S  +ALSACA L   S G Q  G++ +++         DV   +
Sbjct: 138 FVVDMHSEDFVLNE-YSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL------DVYMGS 190

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
           A+V  YS+      A   F  M   +V+ N+V+W+++I  Y Q G   +AL+VF +M  C
Sbjct: 191 ALVDMYSKCRVVASAQRAFDDM---DVR-NIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G+EP+ +TL S+ S CAS+ A+  G + H   +K        + +DL++ NAL+DMYAKC
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKH-----DKYRNDLVLGNALVDMYAKC 301

Query: 405 KSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYS 435
           + V+ AR++FD +  ++                             R+V +W  +I  Y+
Sbjct: 302 RRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYT 361

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY--- 492
           QNG   +A+ LF  +  + + + P  +T    L ACA LA L+ GRQ H ++L++ +   
Sbjct: 362 QNGENEEAVRLF--LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFK 419

Query: 493 --EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
             E    FV N LIDMY + G ++  R+VF+ + +R+ VSW +++ GY  +G G +A   
Sbjct: 420 SGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEI 479

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M   G  PD VT + +L ACSH+G+V++G  YF SM+ E G+    +HY C+VDLLG
Sbjct: 480 FREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLG 539

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA  LDEA  LI+ MPMEP  ++W +LL  C++H N+ LG+  A RLLE++    G Y L
Sbjct: 540 RAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVL 599

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           LSN+YA  GRWKDV R+R  M+  GV K+PGCSW+  +     F V D+ HP  + IY I
Sbjct: 600 LSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLI 659

Query: 731 LAGLVQRIKAMGYVPQTSFALHDVD---DEEKGDLLFEHSE 768
           L  L +++K +GYVP+      D D   +EE    L  HSE
Sbjct: 660 LKILTEQMKRVGYVPEA-----DDDEPYEEESDSELILHSE 695



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 238/471 (50%), Gaps = 46/471 (9%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WNA++    +    + A R  + M    +  +EY+F   L AC  L     G  +H +I 
Sbjct: 119 WNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIA 178

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S +  +V++ +AL+ MY++C  ++ A++ FD+M    + +IVSWN+++  Y Q+G A  
Sbjct: 179 KSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDM---DVRNIVSWNSLITCYEQNGPAGK 235

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
            L +F RM  +  ++ D ++L +  SACASL     G Q                     
Sbjct: 236 ALEVFVRMM-NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNAL 294

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                 C  + EA+ VF+RM ++DVVS  +MV+GY++  S + A  +F  M +     NV
Sbjct: 295 VDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMER----NV 350

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+A+IAGY Q G   EA+ +F  ++   + P   T  +LL+ CA++  L LG++ H +
Sbjct: 351 VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTH 410

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            +K           D+ V N+LIDMY KC  V+  R++F+ +    RD  +W  MI  Y+
Sbjct: 411 ILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERML--ERDNVSWNAMIVGYA 468

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM- 494
           QNG   +AL +F +M    +  +P+  T+   L AC+    +  GR    Y      E  
Sbjct: 469 QNGYGTEALEIFREMLVSGE--RPDHVTMIGVLSACSHAGLVEEGR---CYFQSMTIEHG 523

Query: 495 LIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG 542
           L+P   +  C++D+  R+G +D A  +   +  + + V W SL+    +HG
Sbjct: 524 LVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 41/318 (12%)

Query: 46  QCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNA 105
           +C+ + +  L+  ++ ++++  V  + +++ Y   ++   A  +   +     +V  WNA
Sbjct: 300 KCRRVNEARLVFDRMPLRDV--VSETSMVSGYAKASSVKAARLMFSNMMER--NVVSWNA 355

Query: 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
           LI    +    + A RLFL + R    P  YTF  +L AC  L   + G   H  I   G
Sbjct: 356 LIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHG 415

Query: 166 F------DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
           F      DS++FV N+L+ MY +C  +   R +F+ M +    D VSWN ++  YAQ+G 
Sbjct: 416 FWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLER---DNVSWNAMIVGYAQNGY 472

Query: 220 AEGGLMLFARM--TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK- 276
               L +F  M  +G+   + D V+++  LSAC+           G++EE +  F+ M  
Sbjct: 473 GTEALEIFREMLVSGE---RPDHVTMIGVLSACS---------HAGLVEEGRCYFQSMTI 520

Query: 277 ------VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330
                 VKD   +  MV    R G  ++A  L + M  E    + V W +++A  A + H
Sbjct: 521 EHGLVPVKD--HYTCMVDLLGRAGCLDEANNLIQTMPMEP---DAVVWGSLLA--ACKVH 573

Query: 331 GHEALDVFRQMQFCGLEP 348
           G+  L  +   +   ++P
Sbjct: 574 GNITLGKYVAERLLEIDP 591


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 321/571 (56%), Gaps = 36/571 (6%)

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y+  G  + +  L  + +        + +++ I  ++ RG     L +   M   GL P
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTT----IFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLP 120

Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG----------------------- 385
              TL + L  C     L LG+  H Y  K  LS D                        
Sbjct: 121 TAHTLSASLPACR---GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALF 177

Query: 386 -SHPDDLMV-INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDA 443
              PD  +V + A++  YA   ++D AR +FD + P+ +D   W  MI  Y+Q+G  N+A
Sbjct: 178 DEMPDPHVVSVTAMLTCYANMGALDDARRLFDGL-PR-KDFICWNAMIDGYTQHGKPNEA 235

Query: 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503
           L LF +M +     +P+  T+   L A A+L  +  G+ +H+YV  ++   L   VA  L
Sbjct: 236 LQLFRRMLRSS--AEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATAL 293

Query: 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563
           +DMY + G ++ A  VF  +  +++V W +++ GY MHG   KA   F Q+R +GL P  
Sbjct: 294 VDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTD 353

Query: 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623
           +TF+ LL ACSHSG+V++G  +F SM  E+GI  + EHY C+VDLLGRA  ++EA  L++
Sbjct: 354 ITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQ 413

Query: 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683
            + + P  ++WV+LL  CR+H N+ LG+  A+ L+       G Y LLSNIYA  G+W++
Sbjct: 414 SLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEE 473

Query: 684 VARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
           VAR+RS+MK +G++K PGCS ++       F  GD +HP + +IY +L  +   +K  G+
Sbjct: 474 VARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGH 533

Query: 744 VPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITF 803
           VPQT   LHD+D+  K   L  HSEKLA+A+G++++ PG+ I+I KNLR C DCH+ +  
Sbjct: 534 VPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKL 593

Query: 804 ISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
           IS I + +I+ RD NRFHHF +GSCTC  YW
Sbjct: 594 ISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 132/535 (24%), Positives = 217/535 (40%), Gaps = 112/535 (20%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLT--HVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSV 100
           LL  C +  +   +H  ++ + L         L  AY +      +L+LL R +  P ++
Sbjct: 30  LLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGR-TKDPTTI 88

Query: 101 FWWNALIRRAVR-LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           F+ +A+   + R L LP     L   M+  G  P  +T    L AC  L     G ++HA
Sbjct: 89  FYTSAIHAHSSRGLHLP--GLALLSDMLSEGLLPTAHTLSASLPACRGLS---LGRALHA 143

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
                    + +V  AL++MYAR    + AR LFDEM  P    +VS   ++  YA    
Sbjct: 144 YAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDP---HVVSVTAMLTCYAN--- 197

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
                                                      G +++A+++F+ +  KD
Sbjct: 198 ------------------------------------------MGALDDARRLFDGLPRKD 215

Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
            + WNAM+ GY++ G   +A  LF++M + + +                           
Sbjct: 216 FICWNAMIDGYTQHGKPNEALQLFRRMLRSSAE--------------------------- 248

Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
                   P+ VT+V +LS  A +G +  GK  H Y +K    V      ++ V  AL+D
Sbjct: 249 --------PDEVTVVLVLSAVAQLGTVESGKWLHSY-VKNSRCVQL----NVRVATALVD 295

Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
           MY KC S++ A  +F  I   N+D+  W  MI  Y+ +G +  AL +F Q+  +D+ + P
Sbjct: 296 MYCKCGSLEDAVAVFHGIG--NKDIVVWNAMINGYAMHGDSRKALEMFVQL--RDQGLWP 351

Query: 460 NAFTLSCALMACARLAALRFGRQI-----HAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
              T    L AC+    +  GR       H Y +  + E        C++D+  R+G I+
Sbjct: 352 TDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHY-----GCMVDLLGRAGLIE 406

Query: 515 TARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568
            A  +  +L    + V W SL+    +H          D +   GLA  G+  L+
Sbjct: 407 EAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILL 461


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/573 (38%), Positives = 331/573 (57%), Gaps = 18/573 (3%)

Query: 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM---RQENVKLNVVTWSAV 321
           ++ A K+        + + N+M+  YS+  +   +F  +  +      N+  +  T++ +
Sbjct: 59  LDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFL 118

Query: 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVL 381
           +   AQ       L V   +   G E +      L+   A +G L     + C+ +    
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCL-----SSCHNV---- 169

Query: 382 SVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAN 441
             DG+   DL+   A+++  AKC  +D AR MFD +    RD  TW  MI  Y+Q G + 
Sbjct: 170 -FDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPE--RDHVTWNAMIAGYAQCGRSR 226

Query: 442 DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501
           +AL +F  M  Q + VK N  ++   L AC  L  L  GR +HAYV R +  M +  +  
Sbjct: 227 EALDVFHLM--QMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVT-LGT 283

Query: 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561
            L+DMY++ G++D A  VF  +K+RNV +W+S + G  M+G G+++   F+ M++EG+ P
Sbjct: 284 ALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQP 343

Query: 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621
           +G+TF+ +L  CS  G+V++G K+FDSM   +GI  + EHY  +VD+ GRA RL EA+  
Sbjct: 344 NGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNF 403

Query: 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681
           I  MPM P    W ALL+ CR++ N ELGE+A  +++ELE + DG+Y LLSNIYA+   W
Sbjct: 404 INSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNW 463

Query: 682 KDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAM 741
           + V+ +R  MK  GVKK PGCS ++       F VGD++HP+  +I   L  + + ++  
Sbjct: 464 ESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLS 523

Query: 742 GYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAI 801
           GYV  T+  L D+++EEK D L +HSEK+A+A+G+++     PIR+  NLRIC DCH+  
Sbjct: 524 GYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVA 583

Query: 802 TFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
             IS I N EII+RD NRFHHFK+G C+CK YW
Sbjct: 584 KMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 201/428 (46%), Gaps = 61/428 (14%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNLTHVPPSH--LIAAYVSHNAPS--PALSLLQRISPSPF 98
           LL  C +L ++  IH Q++V+ + + P  H   +A    HN  +   A  LL   + +P 
Sbjct: 15  LLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNH-NNNP- 72

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMR---RGWHPDEYTFPFVLKACGELPSSRCGS 155
           ++F  N++IR   +   P  +F  +  ++        PD YTF F+++ C +L +   G 
Sbjct: 73  TLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGL 132

Query: 156 SVHAVICSSGFDSNVFVCNALMAMY-------------------------------ARCD 184
            VH  +   GF+ +  V   L+ MY                               A+C 
Sbjct: 133 CVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCG 192

Query: 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLV 244
            + +AR++FDEM +    D V+WN ++A YAQ G +   L +F  M  +  V+ + VS+V
Sbjct: 193 DIDFARKMFDEMPER---DHVTWNAMIAGYAQCGRSREALDVFHLMQME-GVKLNEVSMV 248

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW-NAMVTGYSRIGSFEDAFALF 303
             LSAC  L     G+            ER KV+  V+   A+V  Y++ G+ + A  +F
Sbjct: 249 LVLSACTHLQVLDHGRW------VHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVF 302

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
             M++     NV TWS+ I G A  G G E+LD+F  M+  G++PN +T +S+L GC+ V
Sbjct: 303 WGMKER----NVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVV 358

Query: 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD 423
           G +  G++ H  +++ V  +       L     ++DMY +   +  A    +++ P    
Sbjct: 359 GLVEEGRK-HFDSMRNVYGIG----PQLEHYGLMVDMYGRAGRLKEALNFINSM-PMRPH 412

Query: 424 VATWTVMI 431
           V  W+ ++
Sbjct: 413 VGAWSALL 420


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/516 (40%), Positives = 300/516 (58%), Gaps = 11/516 (2%)

Query: 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378
           +++I  Y        ++ ++ QM   G+ P+  T  ++L   A +    LGK  HC  I+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438
                      ++ V  AL++MY  C SV  AR +FD I   +R++ +W  +I  Y+ N 
Sbjct: 171 M------GFESNVYVSTALVNMYGTCSSVSDARQVFDEIP--DRNIVSWNALITGYNHNR 222

Query: 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498
                + +F +M  Q    KP   T+   L+ACA L AL  GR I  Y+  N+  + + F
Sbjct: 223 MFRKVIDVFREM--QIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNV-F 279

Query: 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558
           V   LIDMY++ G +D A  +F  ++ +NV +W  L++GY M+G G+ A  AF +M  E 
Sbjct: 280 VGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEK 339

Query: 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618
             PD VTFL +L AC H G+V++G  YF SM +EFG+  R EHY C+VDLLGRA  LDEA
Sbjct: 340 FKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEA 399

Query: 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678
            +LI+ M M+P PIIW  LL  CRIH N++LGE A  +LLELE     +Y LL+N+YA  
Sbjct: 400 QQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARD 459

Query: 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRI 738
            RW  V  +R +M    V+K PGCS ++       F V +   P  +++Y++LA + +++
Sbjct: 460 QRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKL 519

Query: 739 KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCH 798
           K  GYV  T  A +D+++EEK   L  HSEKLALA+G+L +  G  +RI KNLRIC DCH
Sbjct: 520 KLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCH 579

Query: 799 SAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
                +S +   +I +RD NRFHHF  G+C+CK YW
Sbjct: 580 GFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 71/355 (20%)

Query: 122 LFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181
           ++ QM + G  PD  TFP VLK+  +L     G ++H  I   GF+SNV+V  AL+ MY 
Sbjct: 129 IYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYG 188

Query: 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGD 239
            C ++S ARQ+FDE+      +IVSWN ++  Y  +      + +F  M   G   V+  
Sbjct: 189 TCSSVSDARQVFDEIPDR---NIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVE-- 243

Query: 240 GVSLVNALSACASLGTWSRGK--------------------------QCGMMEEAKKVFE 273
            V++V  L ACA LG  ++G+                          +CG+++EA+K+F+
Sbjct: 244 -VTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFK 302

Query: 274 RMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE 333
            M+VK+V +WN +++GY+  G  E A   F +M  E  K + VT+  V+     +G  +E
Sbjct: 303 AMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNE 362

Query: 334 ALDVFRQM---------------------------------QFCGLEPNVVTLVSLLSGC 360
               F  M                                 Q   ++P+ +    LL  C
Sbjct: 363 GRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGAC 422

Query: 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
              G + LG+    + IK++L ++ ++ ++ +++  L     +   V   R M D
Sbjct: 423 RIHGNIQLGE----FAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMD 473



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 174/385 (45%), Gaps = 35/385 (9%)

Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
           LF + +  G  D    N+++  Y  S      + ++ +M  +  +  D  +    L + A
Sbjct: 97  LFTQFY--GFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKN-GIFPDSSTFPTVLKSVA 153

Query: 252 SLGTWSRGK--QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309
            L     GK   C +++     FE     +V    A+V  Y    S  DA  +F ++   
Sbjct: 154 QLCRQELGKAIHCCIIQMG---FE----SNVYVSTALVNMYGTCSSVSDARQVFDEIPDR 206

Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369
           N+    V+W+A+I GY       + +DVFR+MQ  G +P  VT+V +L  CA +GAL  G
Sbjct: 207 NI----VSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQG 262

Query: 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429
           +    Y     L +      ++ V  ALIDMYAKC  VD A  +F A+  KN  V TW V
Sbjct: 263 RWIDDYIDHNRLRL------NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKN--VYTWNV 314

Query: 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR 489
           +I  Y+ NG    AL  F +M  +    KP+  T    L AC     +  GR    Y   
Sbjct: 315 LISGYAMNGRGESALQAFSRMIMEK--FKPDEVTFLGVLCACCHQGLVNEGR---TYFTS 369

Query: 490 NQYEM-LIPFVAN--CLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGD 545
            + E  L P + +  C++D+  R+G +D A+ +   +  Q + + W  L+    +HG   
Sbjct: 370 MKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQ 429

Query: 546 KAHWAFDQMRKEGLAPDGVTFLVLL 570
              +A  ++ +  L P+     VLL
Sbjct: 430 LGEFAIKKLLE--LEPNNGENYVLL 452



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 25/282 (8%)

Query: 73  LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
           L+  Y + ++ S A  +   I     ++  WNALI      R+      +F +M   G  
Sbjct: 183 LVNMYGTCSSVSDARQVFDEIPDR--NIVSWNALITGYNHNRMFRKVIDVFREMQIAGAK 240

Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192
           P E T   VL AC  L +   G  +   I  +    NVFV  AL+ MYA+C  +  A ++
Sbjct: 241 PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKI 300

Query: 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252
           F  M    + ++ +WN +++ YA +G  E  L  F+RM  + K + D V+ +  L AC  
Sbjct: 301 FKAM---RVKNVYTWNVLISGYAMNGRGESALQAFSRMIME-KFKPDEVTFLGVLCACC- 355

Query: 253 LGTWSRGKQCGMMEEAKKVFERMKVK-----DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                     G++ E +  F  MK +      +  +  MV    R G  ++A  L + M 
Sbjct: 356 --------HQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAM- 406

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
             +++ + + W  ++   A R HG+  L  F   +   LEPN
Sbjct: 407 --SMQPDPIIWRELLG--ACRIHGNIQLGEFAIKKLLELEPN 444


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/678 (34%), Positives = 357/678 (52%), Gaps = 81/678 (11%)

Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLF 193
           D   F  +L  C +L SSR   SVH  +  + F   VF+ N L+ +Y +C  L YAR++F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 194 DEMFQPGIC----------------------------DIVSWNTIVAAYAQSGDAEGGLM 225
           D M +  +                             D  SWN+++A +AQ    E  L 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-GMMEEAKKVFERMKVKDVVSWN 284
            F RM  D  V  D  S  + LSAC+ L     G Q  G++ ++K         DV   +
Sbjct: 143 WFVRMHRDDFVLND-YSFGSGLSACSRLKDLKLGAQIHGLISKSKYSL------DVFMGS 195

Query: 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344
            ++  YS+ G    A  +F  M ++    NVV+W+ +I  Y Q G   EAL+ F +M   
Sbjct: 196 GLIDFYSKCGLVGCARRVFDGMEEK----NVVSWNCLITCYEQNGPAIEALEAFGRMTEL 251

Query: 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404
           G +P+ VTL S++S CA++ A   G + H   +K          +DL++ NAL+DMYAKC
Sbjct: 252 GFKPDEVTLASVVSACATLAAFKEGVQIHARVVK-----SDKFRNDLILGNALVDMYAKC 306

Query: 405 KSVDVARVMFDAIAPKN-----------------------------RDVATWTVMIGSYS 435
             V+ AR +FD +  +N                             +D+ +W  +I  Y+
Sbjct: 307 GRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYT 366

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY--- 492
           QNG   +AL LF +M +++  V P  +T    L A A LA L  GRQ H++V+++ +   
Sbjct: 367 QNGENEEALGLF-RMLKRES-VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQ 424

Query: 493 --EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWA 550
             E    FV N LIDMY + G ++    VF+N+ +++ VSW +++ GY  +G G +A   
Sbjct: 425 SGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALEL 484

Query: 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610
           F +M + G  PD VT +  L ACSH+G+V++G +YF SM+KE G+    +HY C+VDLLG
Sbjct: 485 FQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLG 544

Query: 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670
           RA  L+EA +LIE MP +P  ++W +LL+ C++H N+ LG+  A ++ E++    G Y L
Sbjct: 545 RAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVL 604

Query: 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEI 730
           L+N+Y+  GRW D   +R LM+  GV K+PGCSW+  +     F V D+ HPQ ++IY I
Sbjct: 605 LANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSI 664

Query: 731 LAGLVQRIKAMGYVPQTS 748
           L  L + ++  GYVP  S
Sbjct: 665 LKLLTKHMRQAGYVPDAS 682



 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 246/467 (52%), Gaps = 40/467 (8%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN++I    +    + A   F++M R  +  ++Y+F   L AC  L   + G+ +H +I 
Sbjct: 124 WNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLIS 183

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            S +  +VF+ + L+  Y++C  +  AR++FD M +    ++VSWN ++  Y Q+G A  
Sbjct: 184 KSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEK---NVVSWNCLITCYEQNGPAIE 240

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--------------------- 261
            L  F RMT ++  + D V+L + +SACA+L  +  G Q                     
Sbjct: 241 ALEAFGRMT-ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNAL 299

Query: 262 ------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
                 CG + EA+ VF+RM V++ VS   MV+GY++  S + A ++F  ++Q+    ++
Sbjct: 300 VDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQK----DI 355

Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
           V+W+A+IAGY Q G   EAL +FR ++   + P   T  +LL+  A++  L LG++ H +
Sbjct: 356 VSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSH 415

Query: 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435
            +K           D+ V N+LIDMY KC SV+    +F+ +  K  D  +W  MI  Y+
Sbjct: 416 VVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEK--DHVSWNTMIIGYA 473

Query: 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495
           QNG   +AL LF +M +  +  KP+  T+   L AC+    +  GR+    + +    + 
Sbjct: 474 QNGYGMEALELFQKMLESGE--KPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLP 531

Query: 496 IPFVANCLIDMYSRSGDIDTARVVFDNL-KQRNVVSWTSLMTGYGMH 541
           +     C++D+  R+G ++ A+ + +++ KQ + V W+SL++   +H
Sbjct: 532 VKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVH 578


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 337/556 (60%), Gaps = 15/556 (2%)

Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338
           D ++ N ++  YS+ G  E A  LF +M   ++    V+W+ ++  + Q G   +AL +F
Sbjct: 81  DTITSNMLMNMYSKCGLVESARKLFDEMPVRSL----VSWNTMVGSHTQNGDCEKALVLF 136

Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
            QMQ  G   +  T+ S++  CA+   +   K+ H + +K  L        ++ V  AL+
Sbjct: 137 MQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALD------SNVFVGTALL 190

Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK 458
           D+YAKC  V  A ++F+ + P+  DV TW+ M+  Y QN    +AL LF +   Q   ++
Sbjct: 191 DVYAKCGLVKDANLVFECM-PERSDV-TWSSMVAGYVQNELYEEALVLFHR--AQAMGLE 246

Query: 459 PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518
            N FT+S AL ACA  AAL  G+Q+ A   +      I FV + LIDMY++ G I+ A  
Sbjct: 247 HNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNI-FVISSLIDMYAKCGIIEEAYT 305

Query: 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578
           VF +++++NVV W ++++G+  H    +A   F++M++ G+ P+ +T++ +L ACSH G+
Sbjct: 306 VFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGL 365

Query: 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALL 638
           V++G KYFD M +   +S    HY+C+VD+LGRA  L EA + I+ MP + T  +W +LL
Sbjct: 366 VEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425

Query: 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698
             CRI+ N+EL E+AA  L E+E    G++ LLSNIYA   RW++VAR R+L+K +  KK
Sbjct: 426 ASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKK 485

Query: 699 RPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758
             G SW++ K    +F VG+R HP+  +IY  L  LV  +K +GY  +T   LHDV++  
Sbjct: 486 ERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESR 545

Query: 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSN 818
           K +LL  HSEKLAL +GI+    G PIRI KNLRICGDCHS +   S I   EII+RD+N
Sbjct: 546 KQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTN 605

Query: 819 RFHHFKEGSCTCKGYW 834
           RFHHFK G C+C  +W
Sbjct: 606 RFHHFKNGYCSCGEFW 621



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 185/408 (45%), Gaps = 74/408 (18%)

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
           G + HA I   G  ++    N LM MY++C  +  AR+LFDEM    +  +VSWNT+V +
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEM---PVRSLVSWNTMVGS 122

Query: 214 YAQSGDAEGGLMLFARMTGDVKV-----------------------QGDGVSLVNALSAC 250
           + Q+GD E  L+LF +M  +                          Q  G +L  AL + 
Sbjct: 123 HTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSN 182

Query: 251 ASLGT--WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308
             +GT       +CG++++A  VFE M  +  V+W++MV GY +   +E+A  LF     
Sbjct: 183 VFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLF----- 237

Query: 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368
                                  H A       Q  GLE N  T+ S LS CA+  AL+ 
Sbjct: 238 -----------------------HRA-------QAMGLEHNQFTISSALSACAARAALIE 267

Query: 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWT 428
           GK+    + K  +        ++ VI++LIDMYAKC  ++ A  +F ++  KN  V  W 
Sbjct: 268 GKQVQAVSCKTGIG------SNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKN--VVLWN 319

Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
            ++  +S++  + +A+  F +M Q    + PN  T    L AC+ L  +  GR+    ++
Sbjct: 320 AILSGFSRHVRSLEAMIYFEKMQQMG--ICPNDITYISVLSACSHLGLVEKGRKYFDLMI 377

Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-WTSLM 535
           R           +C++D+  R+G +  A+   D +      S W SL+
Sbjct: 378 RVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 129/281 (45%), Gaps = 33/281 (11%)

Query: 99  SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
           S+  WN ++    +    + A  LF+QM + G    E+T   V+ AC           +H
Sbjct: 112 SLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLH 171

Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
                +  DSNVFV  AL+ +YA+C  +  A  +F+ M  P   D V+W+++VA Y Q+ 
Sbjct: 172 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECM--PERSD-VTWSSMVAGYVQNE 228

Query: 219 DAEGGLMLFARMTG--------------------DVKVQGDGVSLVNALSACAS-----L 253
             E  L+LF R                          ++G  V  V+  +   S      
Sbjct: 229 LYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVIS 288

Query: 254 GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL 313
                  +CG++EEA  VF  ++ K+VV WNA+++G+SR     +A   F+KM+Q  +  
Sbjct: 289 SLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICP 348

Query: 314 NVVTWSAVIAGYAQRG---HGHEALDVFRQMQFCGLEPNVV 351
           N +T+ +V++  +  G    G +  D+  ++    + PNV+
Sbjct: 349 NDITYISVLSACSHLGLVEKGRKYFDLMIRVH--NVSPNVL 387



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 46/258 (17%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           W++++   V+  L + A  LF +    G   +++T    L AC    +   G  V AV C
Sbjct: 217 WSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSC 276

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
            +G  SN+FV ++L+ MYA+C  +  A  +F  + +    ++V WN I++ +++   +  
Sbjct: 277 KTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK---NVVLWNAILSGFSRHVRSLE 333

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVS 282
            ++ F +M   + +  + ++ ++ LSAC+ L         G++E+ +K F+ M       
Sbjct: 334 AMIYFEKMQ-QMGICPNDITYISVLSACSHL---------GLVEKGRKYFDLM------- 376

Query: 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
                                  +R  NV  NV+ +S ++    + G  HEA D   +M 
Sbjct: 377 -----------------------IRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMP 413

Query: 343 FCGLEPNVVTLVSLLSGC 360
           F   +       SLL+ C
Sbjct: 414 F---DATASMWGSLLASC 428


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 349/609 (57%), Gaps = 41/609 (6%)

Query: 260 KQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL---NVV 316
           ++C  + +AK+V  ++ +K++   + ++T   R+ +      L    R    +L   N  
Sbjct: 16  ERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPF 75

Query: 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
            W+A+I  YA RG   +AL  +  M+   + P   T  +L S CA+V    LG + H  T
Sbjct: 76  AWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQT 135

Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--------------- 421
           +     + G    DL V NA+IDMY KC S+  AR++FD +  ++               
Sbjct: 136 L-----LLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 422 --------------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
                         +D+ TWT M+  Y+QN    DAL +F ++  +D+ V+ +  TL   
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRL--RDEGVEIDEVTLVGV 248

Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLKQR 526
           + ACA+L A ++   I      + + +     V + LIDMYS+ G+++ A  VF  +++R
Sbjct: 249 ISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRER 308

Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586
           NV S++S++ G+ +HG    A   F  M + G+ P+ VTF+ +L ACSH+G+VDQG + F
Sbjct: 309 NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLF 368

Query: 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646
            SM K +G++  AE YAC+ DLL RA  L++A++L+E MPME    +W ALL    +H N
Sbjct: 369 ASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGN 428

Query: 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQ 706
            ++ E+A+ RL ELE +  G+Y LLSN YA+AGRW DV+++R L++   +KK PG SWV+
Sbjct: 429 PDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVE 488

Query: 707 GKEGTATFFV-GDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFE 765
            K G    FV GD +HP+  +I + L  L++R+K +GY P  S   + ++D EK  LL  
Sbjct: 489 AKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMA 548

Query: 766 HSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKE 825
           HSEKLALA+G+L+T  G+ I+I KNLRIC DCH  +   S +   +I++RD+ RFHHF  
Sbjct: 549 HSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLN 608

Query: 826 GSCTCKGYW 834
           G+C+C  +W
Sbjct: 609 GACSCSNFW 617



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 215/474 (45%), Gaps = 68/474 (14%)

Query: 43  LLRQCKSLTQVYLIHQQIIVQNL---THVPPSHLIAAYVSHNAP---SPALSLLQRISPS 96
           +L +C SL Q   +H QI ++NL   ++V    L       + P    P L   Q  +P+
Sbjct: 14  ILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPN 73

Query: 97  PFSVFWWNALIRRAVRLRLP-DNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGS 155
           PF+   W ALIR A  LR P   A   +  M +R   P  +TF  +  AC  +  S  G+
Sbjct: 74  PFA---WTALIR-AYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGA 129

Query: 156 SVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214
            +HA  +   GF S+++V NA++ MY +C +L  AR +FDEM +    D++SW  ++ AY
Sbjct: 130 QLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPER---DVISWTGLIVAY 186

Query: 215 AQSGDAEGGLMLF------------ARMTG------------------DVKVQGDGVSLV 244
            + GD      LF            A +TG                  D  V+ D V+LV
Sbjct: 187 TRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLV 246

Query: 245 NALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
             +SACA LG     K    + +  +        +V+  +A++  YS+ G+ E+A+ +FK
Sbjct: 247 GVISACAQLGA---SKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFK 303

Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
            MR+     NV ++S++I G+A  G    A+ +F  M   G++PN VT V +L+ C+  G
Sbjct: 304 GMRER----NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAG 359

Query: 365 ALLLGKE-----THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419
            +  G++       CY +               +   + D+ ++   ++ A  + + + P
Sbjct: 360 LVDQGQQLFASMEKCYGVAPTAE----------LYACMTDLLSRAGYLEKALQLVETM-P 408

Query: 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
              D A W  ++G+   +G  + A     ++F+ +     N   LS    +  R
Sbjct: 409 MESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGR 462


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/684 (33%), Positives = 352/684 (51%), Gaps = 86/684 (12%)

Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVIC 162
           WN +I    R   P  A  ++  M++ G  P  +T   VL ACG + +   G   H +  
Sbjct: 110 WNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAV 169

Query: 163 SSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEG 222
             G D N FV N L+ MY +C +++ A +LFD M  P   + VS+  ++   AQSG  + 
Sbjct: 170 KVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSP---NEVSFTAMMGGLAQSGAVDD 226

Query: 223 GLMLFARMTGDVKVQGDGVSLVNALSACAS------------------------------ 252
            L LFARM+    ++ D V++ + L ACA                               
Sbjct: 227 ALRLFARMSRSA-IRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSD 285

Query: 253 -------LGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305
                  +  +++G +   M+EA KVFE M    +VSWN +VTGY ++G +E A  +   
Sbjct: 286 QHVGNSLIDMYAKGMK---MDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDL 342

Query: 306 MRQENVKLN-------------------------------VVTWSAVIAGYAQRGHGHEA 334
           M++   + N                               V TW+ +++GY Q     + 
Sbjct: 343 MQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDT 402

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394
           +++FR+MQ   ++P+  TL  +LS C+ +G L LGK+ H  ++K +L       +D+ V 
Sbjct: 403 IELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLH------NDMFVA 456

Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
           + LIDMY+KC  V +A+++F+ +    RDV  W  MI   + +    +A   F QM +  
Sbjct: 457 SGLIDMYSKCGQVGIAQIIFNMMT--ERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENG 514

Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
               P   + +  + +CARL+++  GRQIHA VL++ Y+  + +V + LIDMY++ G++D
Sbjct: 515 MF--PTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNV-YVGSSLIDMYAKCGNMD 571

Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
            AR+ F+ +  +N+V+W  ++ GY  +G G+KA   F+ M      PD VTF+ +L  CS
Sbjct: 572 DARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCS 631

Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
           HSG+VD+ + YF+SM   +GI    EHY C++D LGRA R  E V +I+ MP +   I+W
Sbjct: 632 HSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILW 691

Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
             LL  C +H N ELGE AA  L  L+ +    Y LLSNIYA  GR  D + +R+LM   
Sbjct: 692 EVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSR 751

Query: 695 GVKKRPGCSWVQGKEGTATFFVGD 718
           GV K  G SWV  K+G   F V D
Sbjct: 752 GVVKGRGYSWVNHKDGARAFMVAD 775



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 195/400 (48%), Gaps = 31/400 (7%)

Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
           G+   A + F  +   +V S+NA ++   R G    A  L  +M   N     V+W+ VI
Sbjct: 59  GLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNA----VSWNTVI 114

Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
           A  A+     EAL+++R M   GL P   TL S+LS C +V AL  G+  H   +K  + 
Sbjct: 115 AAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVK--VG 172

Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
           +DG+      V N L+ MY KC SV  A  +FD ++  N    ++T M+G  +Q+G  +D
Sbjct: 173 LDGNQ----FVENGLLGMYTKCGSVADAVRLFDWMSSPNE--VSFTAMMGGLAQSGAVDD 226

Query: 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAA--------LRFGRQIHAYVLRNQYEM 494
           AL LF +M +    V P A  +S  L ACA+  A        +R  + IHA V+R  ++ 
Sbjct: 227 ALRLFARMSRSAIRVDPVA--VSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDS 284

Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
               V N LIDMY++   +D A  VF+++   ++VSW  L+TGYG  G  ++A    D M
Sbjct: 285 -DQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLM 343

Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
           ++ G  P+ VT+  +L +C  +  V      FD +SK          +  ++   G+   
Sbjct: 344 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKP-----SVTTWNTLLSGYGQEEL 398

Query: 615 LDEAVELIEGMP---MEPTPIIWVALLNGCRIHANVELGE 651
             + +EL   M    ++P       +L+ C     +ELG+
Sbjct: 399 HQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGK 438



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 215/485 (44%), Gaps = 69/485 (14%)

Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
           NV+  NA ++   R   L+ AR L   M      + VSWNT++AA A+S D+ G  +   
Sbjct: 75  NVYSYNAAISAACRAGDLAAARDLLGRMPDR---NAVSWNTVIAAVARS-DSPGEALEMY 130

Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVT 288
           R      +     +L + LSAC ++     G++C  +     +     V+     N ++ 
Sbjct: 131 RGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVE-----NGLLG 185

Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
            Y++ GS  DA  LF  M       N V+++A++ G AQ G   +AL +F +M    +  
Sbjct: 186 MYTKCGSVADAVRLFDWMSSP----NEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRV 241

Query: 349 NVVTLVSLLSGCAS--------VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
           + V + S+L  CA           A+ L +  H   +++          D  V N+LIDM
Sbjct: 242 DPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRK------GFDSDQHVGNSLIDM 295

Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
           YAK   +D A  +F++++  +  + +W +++  Y Q G    AL +   M  Q+   +PN
Sbjct: 296 YAKGMKMDEAMKVFESMSSVS--IVSWNILVTGYGQLGCYERALEVLDLM--QESGFEPN 351

Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
             T S  L +C                                     ++ D+ +AR +F
Sbjct: 352 EVTYSNMLASCI------------------------------------KARDVPSARAMF 375

Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
           D + + +V +W +L++GYG   L       F +M+ + + PD  T  V+L  CS  G+++
Sbjct: 376 DKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILE 435

Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
            G K   S S +  +       + ++D+  +  ++  A ++I  M  E   + W ++++G
Sbjct: 436 LG-KQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIA-QIIFNMMTERDVVCWNSMISG 493

Query: 641 CRIHA 645
             IH+
Sbjct: 494 LAIHS 498



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 202/514 (39%), Gaps = 126/514 (24%)

Query: 94  SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153
           S S  S+  WN L+    +L   + A  +   M   G+ P+E T+  +L +C        
Sbjct: 311 SMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASC-------- 362

Query: 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213
                                       +   +  AR +FD++ +P    + +WNT+++ 
Sbjct: 363 ---------------------------IKARDVPSARAMFDKISKP---SVTTWNTLLSG 392

Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ------------ 261
           Y Q    +  + LF RM     VQ D  +L   LS C+ LG    GKQ            
Sbjct: 393 YGQEELHQDTIELFRRMQHQ-NVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHN 451

Query: 262 --------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
                         CG +  A+ +F  M  +DVV WN+M++G +     E+AF  FK+MR
Sbjct: 452 DMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR 511

Query: 308 QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367
           +                                    G+ P   +  S+++ CA + ++ 
Sbjct: 512 EN-----------------------------------GMFPTESSYASMINSCARLSSIP 536

Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATW 427
            G++ H   +K     DG +  ++ V ++LIDMYAKC ++D AR+ F+ +  KN  +  W
Sbjct: 537 QGRQIHAQVLK-----DG-YDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKN--IVAW 588

Query: 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL-----AALRFGRQ 482
             MI  Y+QNG    A+ LF  M    +  KP++ T    L  C+       A   F   
Sbjct: 589 NEMIHGYAQNGFGEKAVELFEYMLTTKQ--KPDSVTFIAVLTGCSHSGLVDEAIAYFNSM 646

Query: 483 IHAYVLRNQYEMLIPFVAN--CLIDMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYG 539
              Y +R       P V +  CLID   R+G       V D +  + + + W  L+    
Sbjct: 647 ESNYGIR-------PLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACV 699

Query: 540 MHGLGDKAHWAFDQM-RKEGLAPDGVTFLVLLYA 572
           +H   +   +A   + R +   P     L  +YA
Sbjct: 700 VHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYA 733



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 19/301 (6%)

Query: 66  THVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQ 125
             V  S+++A+ +       A ++  +IS    SV  WN L+    +  L  +   LF +
Sbjct: 351 NEVTYSNMLASCIKARDVPSARAMFDKISKP--SVTTWNTLLSGYGQEELHQDTIELFRR 408

Query: 126 MMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT 185
           M  +   PD  T   +L  C  L     G  VH+        +++FV + L+ MY++C  
Sbjct: 409 MQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQ 468

Query: 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM--TGDVKVQGDGVSL 243
           +  A+ +F+ M +    D+V WN++++  A     E     F +M   G    +    S+
Sbjct: 469 VGIAQIIFNMMTER---DVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASM 525

Query: 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALF 303
           +N   +CA L +  +G+Q        +V +    ++V   ++++  Y++ G+ +DA   F
Sbjct: 526 IN---SCARLSSIPQGRQI-----HAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFF 577

Query: 304 KKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363
             M  +N+    V W+ +I GYAQ G G +A+++F  M     +P+ VT +++L+GC+  
Sbjct: 578 NCMIVKNI----VAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHS 633

Query: 364 G 364
           G
Sbjct: 634 G 634



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 27/291 (9%)

Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
           V  WN++I       L + AF  F QM   G  P E ++  ++ +C  L S   G  +HA
Sbjct: 484 VVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHA 543

Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
            +   G+D NV+V ++L+ MYA+C  +  AR  F+ M    + +IV+WN ++  YAQ+G 
Sbjct: 544 QVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMI---VKNIVAWNEMIHGYAQNGF 600

Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--- 276
            E  + LF  M    K + D V+ +  L+ C+           G+++EA   F  M+   
Sbjct: 601 GEKAVELFEYML-TTKQKPDSVTFIAVLTGCS---------HSGLVDEAIAYFNSMESNY 650

Query: 277 -VKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334
            ++ +V  +  ++    R G F +  A+  KM  ++   + + W  ++A      H +  
Sbjct: 651 GIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKD---DAILWEVLLAACVV--HHNAE 705

Query: 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG 385
           L  F       L+P   +   LLS   +     LG+      ++ ++S  G
Sbjct: 706 LGEFAAKHLFRLDPKNPSPYVLLSNIYAT----LGRHGDASAVRALMSSRG 752


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,716,871,530
Number of Sequences: 23463169
Number of extensions: 516879129
Number of successful extensions: 1839596
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10566
Number of HSP's successfully gapped in prelim test: 1487
Number of HSP's that attempted gapping in prelim test: 1563305
Number of HSP's gapped (non-prelim): 68373
length of query: 834
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 683
effective length of database: 8,816,256,848
effective search space: 6021503427184
effective search space used: 6021503427184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 82 (36.2 bits)