BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003273
(834 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXZ|A Chain A, Crystal Structure Of The Human Gga1 Gat Domain
Length = 186
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 386 SHPDDLMVINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GAND 442
SHP+DL N LI + K ++ +AI N +V T M+ S+SQ G A
Sbjct: 45 SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGS 104
Query: 443 ALALFPQMFQQDKLVKPNAF 462
+ L +++Q+ + ++P F
Sbjct: 105 SEDLMKELYQRCERMRPTLF 124
>pdb|1O3X|A Chain A, Crystal Structure Of Human Gga1 Gat Domain
Length = 140
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 386 SHPDDLMVINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GAND 442
SHP+DL N LI + K ++ +AI N +V T M+ S+SQ G A
Sbjct: 20 SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGS 79
Query: 443 ALALFPQMFQQDKLVKPNAF 462
+ L +++Q+ + ++P F
Sbjct: 80 SEDLMKELYQRCERMRPTLF 99
>pdb|1NWM|X Chain X, Gat Domain Of Human Gga1
Length = 142
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 386 SHPDDLMVINALIDMYAK--CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GAND 442
SHP+DL N LI + K ++ +AI N +V T M+ S+SQ G A
Sbjct: 25 SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGS 84
Query: 443 ALALFPQMFQQDKLVKPNAF 462
+ L +++Q+ + ++P F
Sbjct: 85 SEDLMKELYQRCERMRPTLF 104
>pdb|1ZMA|A Chain A, Crystal Structure Of The Bacterocin Transport Accessory
Protein From Streptococcus Pneumoniae
Length = 118
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743
K+ TATFF+G +T P +K L+G+V KA Y
Sbjct: 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIY 63
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRI 293
++V G V VN++ G Q +E +++++ +K+ V ++ ++TGY+R
Sbjct: 28 LQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRD 87
Query: 294 GSF-EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG-----HEALDVFRQMQFCGLE 347
SF + ++++Q+N +L V + G + G G + L V+R+
Sbjct: 88 KSFLAMVVDIVQELKQQNPRL--VYVCDPVMGDQRNGEGAMYVPDDLLPVYRE------- 138
Query: 348 PNVVTLVSLLSGCASVGALLLGKETH 373
VV + +++ LL G++ H
Sbjct: 139 -KVVPVADIITPNQFEAELLTGRKIH 163
>pdb|1NAF|A Chain A, Crystal Structure Of The Human Gga1 Gat Domain
Length = 158
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 386 SHPDDLMVINALI--DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG-GAND 442
SHP+DL N LI + K + +AI N +V T + S+SQ G A
Sbjct: 29 SHPEDLRAANKLIKEXVQEDQKRXEKISKRVNAIEEVNNNVKLLTEXVXSHSQGGAAAGS 88
Query: 443 ALALFPQMFQQDKLVKPNAF 462
+ L +++Q+ + +P F
Sbjct: 89 SEDLXKELYQRCERXRPTLF 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,894,273
Number of Sequences: 62578
Number of extensions: 950517
Number of successful extensions: 2831
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2829
Number of HSP's gapped (non-prelim): 7
length of query: 834
length of database: 14,973,337
effective HSP length: 107
effective length of query: 727
effective length of database: 8,277,491
effective search space: 6017735957
effective search space used: 6017735957
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)