Query 003273
Match_columns 834
No_of_seqs 819 out of 5108
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 20:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-143 7E-148 1273.4 86.2 784 16-832 64-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-120 9E-125 1050.1 65.7 608 203-834 86-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-79 6.8E-84 726.1 63.9 680 101-829 52-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-67 2.9E-72 611.8 53.5 525 70-632 373-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 9.2E-64 2E-68 579.8 62.4 512 134-700 369-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3E-65 6.6E-70 592.0 50.0 466 101-597 88-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-35 8.9E-40 357.3 68.5 646 16-695 206-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-34 2.4E-39 353.5 69.7 550 111-694 272-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.4E-34 3.1E-39 245.2 7.9 106 701-824 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 1.9E-24 4.1E-29 263.5 59.4 388 287-693 276-699 (1157)
11 PRK11447 cellulose synthase su 100.0 8.7E-24 1.9E-28 257.7 63.7 610 49-693 43-739 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 2.6E-23 5.6E-28 212.6 38.0 451 103-684 51-509 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-20 3.3E-25 218.4 59.7 572 78-694 55-706 (987)
14 PRK09782 bacteriophage N4 rece 99.9 1.5E-20 3.3E-25 218.3 58.2 639 15-696 56-742 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 2.2E-21 4.8E-26 198.6 38.6 362 279-694 115-485 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.3E-17 7.1E-22 188.0 46.2 424 206-694 129-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 9E-19 2E-23 190.8 27.4 200 177-452 42-242 (389)
18 PRK11788 tetratricopeptide rep 99.8 4.5E-18 9.8E-23 185.3 31.3 294 321-701 41-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 1.6E-15 3.5E-20 164.7 49.2 548 116-694 146-745 (1018)
20 PRK10049 pgaA outer membrane p 99.8 8.9E-17 1.9E-21 187.6 41.8 406 168-694 13-456 (765)
21 KOG2002 TPR-containing nuclear 99.8 1.8E-15 3.9E-20 164.3 46.2 483 186-696 146-677 (1018)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-16 4.8E-21 181.2 41.7 423 142-663 134-574 (615)
23 PRK15174 Vi polysaccharide exp 99.8 6.3E-17 1.4E-21 184.7 36.7 328 285-665 47-386 (656)
24 PRK15174 Vi polysaccharide exp 99.8 2.3E-16 5.1E-21 180.1 39.5 330 105-562 47-384 (656)
25 PRK10049 pgaA outer membrane p 99.8 5.7E-16 1.2E-20 180.9 39.3 411 138-667 18-463 (765)
26 PRK14574 hmsH outer membrane p 99.7 1.3E-13 2.8E-18 157.7 46.6 373 289-693 111-512 (822)
27 PRK14574 hmsH outer membrane p 99.7 1.8E-13 3.9E-18 156.6 47.3 442 147-667 46-520 (822)
28 KOG0495 HAT repeat protein [RN 99.7 4.6E-11 1E-15 124.6 54.2 581 49-708 266-892 (913)
29 KOG4422 Uncharacterized conser 99.7 1.4E-12 3.1E-17 129.1 40.6 447 100-625 116-587 (625)
30 KOG4422 Uncharacterized conser 99.7 2.1E-13 4.5E-18 134.9 31.1 246 86-347 196-465 (625)
31 KOG2076 RNA polymerase III tra 99.7 7.3E-12 1.6E-16 135.9 44.9 546 113-676 152-785 (895)
32 KOG0495 HAT repeat protein [RN 99.6 7.5E-11 1.6E-15 123.1 47.6 568 23-672 301-892 (913)
33 KOG2076 RNA polymerase III tra 99.6 8E-11 1.7E-15 128.0 47.6 610 48-694 153-849 (895)
34 KOG2003 TPR repeat-containing 99.6 3.9E-12 8.5E-17 126.6 31.4 488 106-681 207-710 (840)
35 KOG1155 Anaphase-promoting com 99.5 7.1E-11 1.5E-15 118.7 35.4 193 495-692 328-534 (559)
36 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 110.1 43.2 494 170-692 73-623 (677)
37 KOG0547 Translocase of outer m 99.5 1.4E-11 3E-16 124.5 29.3 211 475-692 340-564 (606)
38 KOG4318 Bicoid mRNA stability 99.5 3.8E-10 8.2E-15 122.0 40.4 266 59-366 15-287 (1088)
39 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 142.8 11.6 212 475-692 58-275 (280)
40 KOG4318 Bicoid mRNA stability 99.5 1.5E-10 3.2E-15 125.1 35.2 539 95-704 22-603 (1088)
41 KOG2003 TPR repeat-containing 99.5 5.3E-11 1.1E-15 118.7 26.9 454 210-694 207-689 (840)
42 KOG1155 Anaphase-promoting com 99.5 5.8E-10 1.2E-14 112.4 34.4 359 203-625 163-533 (559)
43 KOG1126 DNA-binding cell divis 99.5 8.4E-12 1.8E-16 131.5 22.1 275 406-695 334-621 (638)
44 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 112.6 35.4 473 141-693 22-517 (611)
45 PRK10747 putative protoheme IX 99.4 1.2E-10 2.7E-15 125.5 28.3 280 113-452 97-389 (398)
46 KOG1126 DNA-binding cell divis 99.4 3.4E-11 7.4E-16 127.0 22.1 246 438-694 333-586 (638)
47 PRK10747 putative protoheme IX 99.4 1.5E-10 3.2E-15 124.9 27.9 226 398-660 160-390 (398)
48 KOG1915 Cell cycle control pro 99.4 1.3E-08 2.8E-13 102.9 38.5 431 80-536 86-548 (677)
49 TIGR00540 hemY_coli hemY prote 99.4 4.5E-10 9.8E-15 121.9 30.9 125 181-347 95-219 (409)
50 TIGR00540 hemY_coli hemY prote 99.4 6.8E-10 1.5E-14 120.5 30.0 231 394-657 156-396 (409)
51 PF13429 TPR_15: Tetratricopep 99.4 3.2E-12 6.9E-17 131.7 11.1 56 287-342 15-71 (280)
52 KOG2047 mRNA splicing factor [ 99.3 9.4E-07 2E-11 93.1 49.6 529 83-691 91-684 (835)
53 KOG4162 Predicted calmodulin-b 99.3 7.4E-08 1.6E-12 103.7 40.1 136 566-705 653-793 (799)
54 KOG0547 Translocase of outer m 99.3 1.1E-08 2.3E-13 104.1 30.8 217 399-660 334-566 (606)
55 KOG3785 Uncharacterized conser 99.3 5.1E-08 1.1E-12 95.0 33.8 417 177-667 64-496 (557)
56 TIGR02521 type_IV_pilW type IV 99.3 1.2E-09 2.7E-14 109.4 23.3 197 495-693 29-231 (234)
57 COG2956 Predicted N-acetylgluc 99.3 5.4E-09 1.2E-13 100.8 25.7 301 329-703 49-356 (389)
58 KOG1840 Kinesin light chain [C 99.3 1.3E-09 2.8E-14 116.7 24.1 249 386-692 194-477 (508)
59 KOG2376 Signal recognition par 99.2 7E-08 1.5E-12 100.7 35.4 451 175-687 17-513 (652)
60 COG2956 Predicted N-acetylgluc 99.2 5.1E-09 1.1E-13 101.0 25.1 293 113-452 48-346 (389)
61 KOG3616 Selective LIM binding 99.2 6.5E-07 1.4E-11 95.1 42.4 469 145-693 500-1023(1636)
62 KOG1173 Anaphase-promoting com 99.2 1.4E-07 3E-12 98.1 35.9 260 314-589 243-515 (611)
63 COG3071 HemY Uncharacterized e 99.2 1.9E-08 4.2E-13 100.2 28.0 296 183-562 97-395 (400)
64 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 87.4 5.6 50 313-362 1-50 (50)
65 PRK12370 invasion protein regu 99.2 1.8E-09 3.9E-14 121.8 23.6 209 477-694 320-535 (553)
66 PF13041 PPR_2: PPR repeat fam 99.2 4.1E-11 8.9E-16 86.0 6.7 50 526-575 1-50 (50)
67 COG3071 HemY Uncharacterized e 99.2 2E-08 4.4E-13 100.1 27.5 302 104-452 86-389 (400)
68 KOG1129 TPR repeat-containing 99.2 2.2E-09 4.8E-14 103.2 18.3 235 389-694 221-458 (478)
69 KOG0985 Vesicle coat protein c 99.2 5.6E-07 1.2E-11 98.9 37.9 238 422-692 982-1247(1666)
70 KOG2047 mRNA splicing factor [ 99.1 7.7E-06 1.7E-10 86.5 44.0 402 70-489 105-578 (835)
71 KOG1127 TPR repeat-containing 99.1 3.1E-07 6.8E-12 101.2 35.2 570 83-692 474-1102(1238)
72 KOG1174 Anaphase-promoting com 99.1 2.3E-07 5E-12 92.5 31.0 306 348-667 192-507 (564)
73 PRK11189 lipoprotein NlpI; Pro 99.1 6.8E-09 1.5E-13 107.1 21.6 211 476-695 41-266 (296)
74 KOG1156 N-terminal acetyltrans 99.1 1E-06 2.2E-11 93.2 37.3 453 140-656 13-507 (700)
75 KOG2376 Signal recognition par 99.1 7.1E-07 1.5E-11 93.4 35.3 442 107-585 19-513 (652)
76 TIGR02521 type_IV_pilW type IV 99.1 2.8E-08 6E-13 99.5 23.2 198 424-662 31-234 (234)
77 COG3063 PilF Tfp pilus assembl 99.0 2E-08 4.3E-13 92.8 18.0 162 530-696 37-204 (250)
78 PRK12370 invasion protein regu 99.0 4E-08 8.6E-13 111.0 24.7 178 510-694 317-502 (553)
79 KOG4162 Predicted calmodulin-b 99.0 1.2E-05 2.5E-10 87.3 39.3 206 386-595 318-545 (799)
80 KOG1129 TPR repeat-containing 99.0 2.6E-08 5.6E-13 96.0 16.0 222 284-590 227-456 (478)
81 KOG3785 Uncharacterized conser 99.0 3.9E-06 8.4E-11 82.2 30.8 195 394-602 288-497 (557)
82 KOG1840 Kinesin light chain [C 98.9 5.8E-08 1.3E-12 104.2 20.1 250 170-488 199-477 (508)
83 KOG1174 Anaphase-promoting com 98.9 1.3E-06 2.9E-11 87.2 27.6 364 72-461 102-504 (564)
84 PRK11189 lipoprotein NlpI; Pro 98.9 2.1E-07 4.5E-12 96.1 23.4 224 406-675 41-281 (296)
85 KOG3616 Selective LIM binding 98.9 1.4E-05 3.1E-10 85.3 36.4 200 467-689 888-1129(1636)
86 KOG1127 TPR repeat-containing 98.9 5.1E-06 1.1E-10 92.0 32.9 164 166-343 487-658 (1238)
87 KOG1156 N-terminal acetyltrans 98.8 5.8E-05 1.2E-09 80.4 36.8 412 262-692 54-509 (700)
88 PF12569 NARP1: NMDA receptor- 98.8 6E-06 1.3E-10 90.1 30.8 260 388-660 35-334 (517)
89 KOG0624 dsRNA-activated protei 98.8 3.4E-06 7.4E-11 82.3 25.2 206 321-563 44-256 (504)
90 PF12569 NARP1: NMDA receptor- 98.8 5.9E-05 1.3E-09 82.5 37.6 297 177-555 11-332 (517)
91 KOG3617 WD40 and TPR repeat-co 98.8 0.0002 4.4E-09 77.9 39.8 248 76-376 737-993 (1416)
92 KOG4340 Uncharacterized conser 98.8 3.7E-06 8.1E-11 80.4 23.6 351 138-522 13-371 (459)
93 KOG0985 Vesicle coat protein c 98.8 0.00069 1.5E-08 75.6 43.7 462 104-622 842-1377(1666)
94 KOG3617 WD40 and TPR repeat-co 98.8 7E-06 1.5E-10 88.8 27.7 413 168-688 724-1168(1416)
95 KOG1125 TPR repeat-containing 98.8 1.8E-07 3.9E-12 97.7 15.5 222 400-693 294-526 (579)
96 COG3063 PilF Tfp pilus assembl 98.8 2.1E-06 4.5E-11 79.7 20.4 196 428-665 39-241 (250)
97 KOG1914 mRNA cleavage and poly 98.7 0.00045 9.7E-09 72.2 38.4 458 99-615 19-526 (656)
98 KOG4340 Uncharacterized conser 98.7 1.3E-05 2.8E-10 76.9 23.9 400 172-693 12-442 (459)
99 cd05804 StaR_like StaR_like; a 98.7 2.2E-05 4.7E-10 84.3 29.6 300 390-695 5-337 (355)
100 KOG0548 Molecular co-chaperone 98.7 2.7E-05 5.9E-10 81.2 27.8 251 395-688 228-483 (539)
101 PRK04841 transcriptional regul 98.6 0.00086 1.9E-08 81.9 45.3 371 176-591 347-759 (903)
102 KOG1125 TPR repeat-containing 98.6 1.7E-06 3.7E-11 90.7 18.0 218 361-590 296-525 (579)
103 PF04733 Coatomer_E: Coatomer 98.6 3.2E-06 6.8E-11 85.9 19.0 154 503-663 108-268 (290)
104 KOG0548 Molecular co-chaperone 98.6 0.00012 2.5E-09 76.7 30.1 213 467-694 230-455 (539)
105 cd05804 StaR_like StaR_like; a 98.6 0.00012 2.7E-09 78.5 31.4 64 280-344 6-72 (355)
106 KOG1070 rRNA processing protei 98.5 5.8E-06 1.3E-10 94.6 20.6 199 495-697 1456-1666(1710)
107 PRK15359 type III secretion sy 98.5 2.6E-06 5.7E-11 77.2 14.0 122 549-677 14-138 (144)
108 PF12854 PPR_1: PPR repeat 98.5 7.9E-08 1.7E-12 61.7 2.9 34 309-342 1-34 (34)
109 TIGR03302 OM_YfiO outer membra 98.5 1.2E-05 2.5E-10 80.5 19.7 180 495-694 31-232 (235)
110 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.3E-12 59.9 4.2 33 165-197 2-34 (34)
111 PF04733 Coatomer_E: Coatomer 98.5 2.6E-06 5.7E-11 86.5 14.6 157 392-591 103-264 (290)
112 KOG0624 dsRNA-activated protei 98.5 0.00044 9.6E-09 68.0 28.4 381 169-665 37-427 (504)
113 PLN02789 farnesyltranstransfer 98.5 3.3E-05 7.2E-10 79.6 22.3 204 432-678 45-268 (320)
114 PRK04841 transcriptional regul 98.4 0.00038 8.3E-09 85.0 34.5 377 284-695 345-761 (903)
115 PRK15363 pathogenicity island 98.4 7.1E-06 1.5E-10 72.8 13.4 119 598-739 34-154 (157)
116 KOG1128 Uncharacterized conser 98.4 1.2E-05 2.6E-10 86.6 16.9 217 386-625 393-613 (777)
117 PRK15359 type III secretion sy 98.4 1.2E-05 2.5E-10 72.9 14.6 100 594-695 21-122 (144)
118 PRK10370 formate-dependent nit 98.4 2.3E-05 4.9E-10 75.2 16.9 118 576-695 52-174 (198)
119 KOG1128 Uncharacterized conser 98.3 3E-05 6.5E-10 83.7 18.0 186 495-695 396-583 (777)
120 PRK14720 transcript cleavage f 98.3 0.00026 5.7E-09 81.3 26.4 244 386-683 26-273 (906)
121 PRK15179 Vi polysaccharide bio 98.3 8.8E-05 1.9E-09 84.4 21.3 138 526-668 84-225 (694)
122 TIGR03302 OM_YfiO outer membra 98.2 8.1E-05 1.8E-09 74.5 18.9 182 461-663 33-235 (235)
123 KOG1070 rRNA processing protei 98.2 0.00017 3.7E-09 83.2 22.7 185 392-579 1498-1687(1710)
124 COG4783 Putative Zn-dependent 98.2 0.00068 1.5E-08 70.5 24.6 66 386-451 335-401 (484)
125 COG5010 TadD Flp pilus assembl 98.2 8.6E-05 1.9E-09 70.8 16.2 126 567-694 70-197 (257)
126 PRK10370 formate-dependent nit 98.2 0.00013 2.9E-09 69.9 18.0 152 504-668 23-181 (198)
127 PLN02789 farnesyltranstransfer 98.2 0.00044 9.4E-09 71.4 22.7 136 149-328 51-189 (320)
128 COG5010 TadD Flp pilus assembl 98.2 0.00021 4.5E-09 68.3 18.2 150 535-688 73-225 (257)
129 COG4783 Putative Zn-dependent 98.1 0.00033 7.2E-09 72.7 19.3 113 575-689 318-432 (484)
130 TIGR00756 PPR pentatricopeptid 98.0 8.9E-06 1.9E-10 53.1 4.5 35 529-563 1-35 (35)
131 TIGR00756 PPR pentatricopeptid 98.0 9E-06 1.9E-10 53.1 4.3 33 317-349 2-34 (35)
132 PRK15179 Vi polysaccharide bio 98.0 0.00034 7.4E-09 79.7 19.5 141 495-639 84-230 (694)
133 TIGR02552 LcrH_SycD type III s 98.0 7.8E-05 1.7E-09 67.1 11.8 96 599-694 17-114 (135)
134 PRK14720 transcript cleavage f 98.0 0.0012 2.6E-08 76.0 23.1 148 278-452 29-177 (906)
135 KOG3081 Vesicle coat complex C 97.9 0.005 1.1E-07 59.0 22.7 153 504-663 115-274 (299)
136 TIGR02552 LcrH_SycD type III s 97.9 0.00025 5.4E-09 63.8 14.0 113 550-666 5-120 (135)
137 KOG3060 Uncharacterized conser 97.8 0.004 8.7E-08 59.2 20.1 165 500-669 55-229 (289)
138 PF13812 PPR_3: Pentatricopept 97.8 3.3E-05 7.2E-10 50.0 4.5 33 529-561 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00029 6.3E-09 74.1 13.8 121 567-692 173-295 (395)
140 PF13812 PPR_3: Pentatricopept 97.8 2.6E-05 5.7E-10 50.5 3.9 33 316-348 2-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0013 2.8E-08 69.3 18.1 129 496-629 168-298 (395)
142 KOG0550 Molecular chaperone (D 97.8 0.00029 6.3E-09 71.2 12.3 267 398-694 56-350 (486)
143 KOG2053 Mitochondrial inherita 97.7 0.13 2.9E-06 57.9 45.1 57 289-345 199-256 (932)
144 KOG2053 Mitochondrial inherita 97.7 0.16 3.4E-06 57.3 39.8 98 148-252 22-122 (932)
145 KOG3060 Uncharacterized conser 97.7 0.0025 5.4E-08 60.5 16.0 181 510-694 25-220 (289)
146 KOG1914 mRNA cleavage and poly 97.7 0.11 2.4E-06 55.1 36.9 159 530-691 368-536 (656)
147 cd00189 TPR Tetratricopeptide 97.6 0.00042 9.2E-09 57.3 9.8 92 602-693 3-96 (100)
148 PF13414 TPR_11: TPR repeat; P 97.6 0.00015 3.3E-09 56.2 6.2 65 630-694 2-67 (69)
149 PF09976 TPR_21: Tetratricopep 97.6 0.002 4.4E-08 58.5 14.5 114 541-657 24-144 (145)
150 PF01535 PPR: PPR repeat; Int 97.6 8.4E-05 1.8E-09 46.8 3.5 29 317-345 2-30 (31)
151 KOG0553 TPR repeat-containing 97.6 0.00051 1.1E-08 67.0 10.3 100 573-675 91-193 (304)
152 COG3898 Uncharacterized membra 97.6 0.12 2.5E-06 52.6 28.1 275 403-693 96-391 (531)
153 PF09976 TPR_21: Tetratricopep 97.6 0.0038 8.3E-08 56.7 15.7 84 537-623 57-142 (145)
154 PF12895 Apc3: Anaphase-promot 97.6 9.1E-05 2E-09 60.0 4.4 77 613-690 3-83 (84)
155 PLN03088 SGT1, suppressor of 97.6 0.00087 1.9E-08 71.0 12.9 84 610-693 13-98 (356)
156 PF01535 PPR: PPR repeat; Int 97.6 9.1E-05 2E-09 46.6 3.4 31 529-559 1-31 (31)
157 PF04840 Vps16_C: Vps16, C-ter 97.6 0.14 3E-06 52.9 28.9 125 501-645 181-305 (319)
158 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0013 2.8E-08 57.5 11.8 99 568-666 7-111 (119)
159 PRK10153 DNA-binding transcrip 97.5 0.0037 8.1E-08 69.1 17.7 139 525-694 334-482 (517)
160 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0012 2.7E-08 57.6 11.1 96 600-695 3-106 (119)
161 PRK02603 photosystem I assembl 97.4 0.0039 8.6E-08 58.6 14.4 130 527-680 34-166 (172)
162 PF13432 TPR_16: Tetratricopep 97.4 0.00039 8.5E-09 53.0 6.1 58 637-694 3-60 (65)
163 KOG0550 Molecular chaperone (D 97.4 0.059 1.3E-06 55.2 22.4 351 287-687 56-436 (486)
164 KOG0553 TPR repeat-containing 97.4 0.0011 2.4E-08 64.7 9.8 89 606-694 88-178 (304)
165 KOG3081 Vesicle coat complex C 97.4 0.039 8.4E-07 53.1 19.4 110 505-617 145-259 (299)
166 CHL00033 ycf3 photosystem I as 97.3 0.0017 3.7E-08 60.8 10.5 93 599-691 35-139 (168)
167 KOG2796 Uncharacterized conser 97.3 0.0075 1.6E-07 57.5 14.0 193 52-249 123-328 (366)
168 PRK15363 pathogenicity island 97.3 0.0077 1.7E-07 53.8 13.2 96 500-597 38-137 (157)
169 PRK02603 photosystem I assembl 97.3 0.0025 5.5E-08 59.9 10.9 80 601-680 37-121 (172)
170 PLN03088 SGT1, suppressor of 97.3 0.004 8.7E-08 66.0 13.6 101 575-678 14-117 (356)
171 cd00189 TPR Tetratricopeptide 97.3 0.0036 7.8E-08 51.5 10.9 58 531-590 3-61 (100)
172 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.32 7E-06 50.4 28.0 143 498-645 398-549 (660)
173 PRK15331 chaperone protein Sic 97.3 0.013 2.8E-07 52.6 14.4 90 604-693 42-133 (165)
174 PF08579 RPM2: Mitochondrial r 97.2 0.0022 4.7E-08 52.9 8.3 80 283-362 28-116 (120)
175 PF05843 Suf: Suppressor of fo 97.2 0.0099 2.1E-07 60.7 15.4 134 529-665 2-141 (280)
176 PF14938 SNAP: Soluble NSF att 97.2 0.28 6.2E-06 50.2 26.2 94 533-626 160-264 (282)
177 PF13431 TPR_17: Tetratricopep 97.2 0.00021 4.5E-09 45.8 1.8 32 654-685 2-33 (34)
178 PF14559 TPR_19: Tetratricopep 97.2 0.00099 2.1E-08 51.3 6.1 53 642-694 2-54 (68)
179 KOG1130 Predicted G-alpha GTPa 97.2 0.0024 5.1E-08 64.6 10.0 131 563-693 195-343 (639)
180 CHL00033 ycf3 photosystem I as 97.1 0.024 5.2E-07 53.1 15.9 80 528-610 35-117 (168)
181 PF13371 TPR_9: Tetratricopept 97.1 0.0013 2.8E-08 51.5 6.0 57 639-695 3-59 (73)
182 PF13432 TPR_16: Tetratricopep 97.1 0.0014 3.1E-08 49.8 5.8 61 605-665 3-65 (65)
183 PF14938 SNAP: Soluble NSF att 97.1 0.057 1.2E-06 55.3 19.3 116 535-665 101-230 (282)
184 COG4235 Cytochrome c biogenesi 97.1 0.024 5.1E-07 56.1 15.3 101 596-696 153-258 (287)
185 KOG1538 Uncharacterized conser 97.0 0.16 3.5E-06 54.8 22.0 98 502-631 708-806 (1081)
186 COG4700 Uncharacterized protei 97.0 0.068 1.5E-06 48.4 16.1 132 559-693 85-221 (251)
187 PF05843 Suf: Suppressor of fo 97.0 0.0072 1.6E-07 61.7 11.7 137 281-464 2-143 (280)
188 PF06239 ECSIT: Evolutionarily 97.0 0.0046 1E-07 57.8 9.1 98 269-366 34-154 (228)
189 PF12895 Apc3: Anaphase-promot 96.9 0.0029 6.3E-08 51.1 6.8 80 541-624 2-83 (84)
190 COG4700 Uncharacterized protei 96.9 0.022 4.7E-07 51.5 12.4 108 587-694 77-189 (251)
191 PRK10866 outer membrane biogen 96.9 0.14 3.1E-06 50.9 19.7 62 396-461 37-102 (243)
192 PF14559 TPR_19: Tetratricopep 96.8 0.0018 3.9E-08 49.8 4.4 49 575-625 3-51 (68)
193 PRK10153 DNA-binding transcrip 96.8 0.033 7.2E-07 61.8 15.7 49 647-695 400-450 (517)
194 PF07079 DUF1347: Protein of u 96.8 0.92 2E-05 47.4 38.9 72 619-691 444-521 (549)
195 KOG1130 Predicted G-alpha GTPa 96.7 0.071 1.5E-06 54.3 15.7 127 498-624 196-340 (639)
196 PF12688 TPR_5: Tetratrico pep 96.7 0.044 9.5E-07 47.2 12.2 92 534-625 7-101 (120)
197 PF10037 MRP-S27: Mitochondria 96.7 0.019 4E-07 61.0 11.9 121 131-252 62-185 (429)
198 PF04840 Vps16_C: Vps16, C-ter 96.6 0.45 9.8E-06 49.2 21.7 105 286-416 183-287 (319)
199 KOG2041 WD40 repeat protein [G 96.6 1.5 3.3E-05 48.1 31.0 351 186-624 679-1046(1189)
200 PF13414 TPR_11: TPR repeat; P 96.5 0.0084 1.8E-07 46.2 6.5 63 527-591 2-66 (69)
201 PF08579 RPM2: Mitochondrial r 96.5 0.055 1.2E-06 44.9 11.1 81 530-611 27-116 (120)
202 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.01 2.2E-07 62.3 8.4 63 631-693 75-140 (453)
203 PRK10866 outer membrane biogen 96.5 0.34 7.3E-06 48.2 18.9 169 503-692 38-239 (243)
204 PF13281 DUF4071: Domain of un 96.4 0.23 4.9E-06 51.8 17.9 161 501-664 145-338 (374)
205 PRK10803 tol-pal system protei 96.4 0.018 4E-07 57.6 9.7 92 602-693 146-245 (263)
206 PF10037 MRP-S27: Mitochondria 96.4 0.049 1.1E-06 57.9 13.1 119 457-576 62-186 (429)
207 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.44 9.6E-06 50.5 19.7 62 495-556 73-140 (453)
208 PF13428 TPR_14: Tetratricopep 96.4 0.0057 1.2E-07 42.1 4.1 42 632-673 2-43 (44)
209 PF06239 ECSIT: Evolutionarily 96.4 0.039 8.5E-07 51.8 10.6 97 518-615 35-154 (228)
210 KOG0543 FKBP-type peptidyl-pro 96.3 0.028 6E-07 57.7 10.1 83 632-740 258-340 (397)
211 PF12688 TPR_5: Tetratrico pep 96.3 0.034 7.3E-07 47.9 9.2 86 606-691 8-101 (120)
212 KOG2796 Uncharacterized conser 96.2 0.68 1.5E-05 44.7 17.7 166 500-665 139-320 (366)
213 PF13371 TPR_9: Tetratricopept 96.1 0.019 4.2E-07 44.7 6.5 64 607-670 3-68 (73)
214 PF09205 DUF1955: Domain of un 96.0 0.53 1.2E-05 40.3 14.2 140 539-697 13-152 (161)
215 PRK10803 tol-pal system protei 95.9 0.11 2.4E-06 52.0 12.2 94 539-665 154-251 (263)
216 COG4235 Cytochrome c biogenesi 95.8 0.22 4.8E-06 49.4 13.6 43 300-343 142-184 (287)
217 PF03704 BTAD: Bacterial trans 95.8 0.12 2.7E-06 46.9 11.4 61 633-693 64-124 (146)
218 KOG2041 WD40 repeat protein [G 95.7 1.9 4.2E-05 47.4 20.9 255 406-698 678-956 (1189)
219 KOG1258 mRNA processing protei 95.7 4.1 8.8E-05 44.6 36.1 184 495-681 295-491 (577)
220 PF13424 TPR_12: Tetratricopep 95.7 0.017 3.6E-07 45.8 4.4 60 633-692 7-73 (78)
221 COG0457 NrfG FOG: TPR repeat [ 95.5 2.7 5.9E-05 41.0 24.6 192 498-693 60-264 (291)
222 KOG2114 Vacuolar assembly/sort 95.5 6.2 0.00013 44.9 26.0 77 605-682 711-788 (933)
223 KOG0543 FKBP-type peptidyl-pro 95.4 0.21 4.6E-06 51.5 12.2 138 535-694 215-355 (397)
224 PF13525 YfiO: Outer membrane 95.4 0.53 1.1E-05 45.5 14.6 153 284-452 9-169 (203)
225 PF13424 TPR_12: Tetratricopep 95.4 0.038 8.3E-07 43.7 5.5 26 565-590 7-32 (78)
226 PF13525 YfiO: Outer membrane 95.3 1.7 3.8E-05 41.9 17.8 162 503-685 11-198 (203)
227 KOG4555 TPR repeat-containing 95.2 0.17 3.6E-06 43.0 8.8 89 607-695 51-145 (175)
228 PF03704 BTAD: Bacterial trans 95.2 0.064 1.4E-06 48.7 7.2 72 281-353 63-139 (146)
229 PF04184 ST7: ST7 protein; In 95.2 0.69 1.5E-05 49.1 15.1 219 540-777 180-412 (539)
230 KOG1538 Uncharacterized conser 95.2 0.56 1.2E-05 50.9 14.6 88 322-424 710-806 (1081)
231 PRK11906 transcriptional regul 95.1 0.9 2E-05 48.3 16.0 157 529-689 252-431 (458)
232 KOG2114 Vacuolar assembly/sort 95.1 8.1 0.00017 44.0 24.1 53 178-230 405-457 (933)
233 COG5107 RNA14 Pre-mRNA 3'-end 95.0 5.5 0.00012 41.8 31.6 439 70-571 45-543 (660)
234 COG4785 NlpI Lipoprotein NlpI, 94.9 1.2 2.6E-05 41.8 14.3 177 510-694 78-266 (297)
235 PF12921 ATP13: Mitochondrial 94.8 0.36 7.8E-06 42.1 10.4 48 559-606 48-95 (126)
236 KOG1585 Protein required for f 94.7 2.2 4.8E-05 40.9 15.6 24 499-522 93-116 (308)
237 PF12921 ATP13: Mitochondrial 94.6 0.4 8.7E-06 41.8 10.0 53 202-254 50-102 (126)
238 smart00299 CLH Clathrin heavy 94.4 1.7 3.6E-05 39.0 14.3 120 503-642 13-136 (140)
239 COG3898 Uncharacterized membra 94.4 7.2 0.00016 40.2 28.2 143 83-233 69-217 (531)
240 PF04184 ST7: ST7 protein; In 94.3 1.7 3.8E-05 46.3 15.6 17 649-665 364-380 (539)
241 PRK15331 chaperone protein Sic 94.2 0.39 8.5E-06 43.4 9.2 84 507-591 47-133 (165)
242 KOG2066 Vacuolar assembly/sort 94.2 13 0.00027 42.2 28.3 89 545-645 611-704 (846)
243 KOG3941 Intermediate in Toll s 94.0 0.26 5.5E-06 47.9 8.1 97 270-366 55-174 (406)
244 PF00515 TPR_1: Tetratricopept 94.0 0.1 2.2E-06 33.3 3.9 32 632-663 2-33 (34)
245 PF13512 TPR_18: Tetratricopep 94.0 1 2.2E-05 39.8 11.2 58 609-666 20-82 (142)
246 PF07079 DUF1347: Protein of u 93.9 10 0.00022 40.2 38.0 126 507-637 389-531 (549)
247 COG3118 Thioredoxin domain-con 93.9 3.5 7.6E-05 41.0 15.7 141 269-418 123-263 (304)
248 PRK11906 transcriptional regul 93.8 3.9 8.5E-05 43.7 17.0 107 512-624 319-432 (458)
249 KOG1920 IkappaB kinase complex 93.7 19 0.00042 42.9 27.9 23 209-231 682-704 (1265)
250 COG1729 Uncharacterized protei 93.7 0.72 1.6E-05 45.3 10.7 92 531-625 145-241 (262)
251 COG3118 Thioredoxin domain-con 93.6 2.1 4.5E-05 42.6 13.7 120 572-694 143-265 (304)
252 KOG3941 Intermediate in Toll s 93.5 0.6 1.3E-05 45.5 9.6 100 516-616 53-175 (406)
253 COG1729 Uncharacterized protei 93.5 0.44 9.6E-06 46.7 8.9 63 629-693 178-243 (262)
254 PF07719 TPR_2: Tetratricopept 93.4 0.21 4.5E-06 31.7 4.6 33 632-664 2-34 (34)
255 KOG2280 Vacuolar assembly/sort 93.3 17 0.00037 41.0 33.9 322 261-624 449-795 (829)
256 PF04053 Coatomer_WDAD: Coatom 93.3 1.4 3E-05 47.9 13.4 131 538-695 271-403 (443)
257 PF13512 TPR_18: Tetratricopep 93.2 3 6.4E-05 36.9 12.7 19 647-665 115-133 (142)
258 COG0457 NrfG FOG: TPR repeat [ 93.0 9.3 0.0002 37.1 24.9 165 495-663 93-268 (291)
259 smart00299 CLH Clathrin heavy 92.6 6.1 0.00013 35.3 14.8 128 529-676 8-136 (140)
260 COG4105 ComL DNA uptake lipopr 92.6 11 0.00024 36.9 17.0 77 283-361 37-117 (254)
261 KOG4234 TPR repeat-containing 92.5 0.72 1.6E-05 42.6 8.2 88 608-695 104-198 (271)
262 KOG1941 Acetylcholine receptor 92.3 4.1 8.9E-05 41.4 13.7 127 534-660 128-275 (518)
263 COG4105 ComL DNA uptake lipopr 92.0 13 0.00028 36.4 19.0 57 638-694 174-233 (254)
264 KOG2610 Uncharacterized conser 92.0 3.7 8E-05 41.3 12.9 48 542-590 117-164 (491)
265 KOG1941 Acetylcholine receptor 92.0 2.1 4.6E-05 43.4 11.4 160 530-690 85-271 (518)
266 PF04053 Coatomer_WDAD: Coatom 91.9 2.9 6.4E-05 45.4 13.7 102 399-522 326-427 (443)
267 KOG1920 IkappaB kinase complex 91.8 35 0.00076 40.9 23.9 145 317-527 910-1056(1265)
268 PF10300 DUF3808: Protein of u 91.7 7.9 0.00017 42.8 17.0 114 577-693 247-375 (468)
269 PF13428 TPR_14: Tetratricopep 91.6 0.27 5.8E-06 33.6 3.6 40 172-211 3-42 (44)
270 KOG4555 TPR repeat-containing 91.6 1.3 2.7E-05 37.9 8.0 53 537-591 52-105 (175)
271 KOG1585 Protein required for f 91.6 11 0.00023 36.5 14.9 162 266-445 75-248 (308)
272 PF10300 DUF3808: Protein of u 91.5 4.2 9E-05 45.0 14.6 81 511-591 247-333 (468)
273 PF08631 SPO22: Meiosis protei 91.4 18 0.0004 36.8 21.4 19 215-233 4-22 (278)
274 KOG2610 Uncharacterized conser 90.7 4.8 0.0001 40.5 12.2 119 112-231 115-236 (491)
275 PF02259 FAT: FAT domain; Int 90.5 26 0.00057 37.1 19.8 149 527-677 145-304 (352)
276 COG3629 DnrI DNA-binding trans 90.3 1.9 4.1E-05 43.1 9.4 79 280-359 153-236 (280)
277 PF13176 TPR_7: Tetratricopept 89.6 0.54 1.2E-05 30.4 3.5 26 667-692 1-26 (36)
278 PF04097 Nic96: Nup93/Nic96; 89.4 21 0.00046 41.0 18.4 21 609-629 515-535 (613)
279 COG3629 DnrI DNA-binding trans 89.4 1.7 3.6E-05 43.5 8.2 80 170-249 153-236 (280)
280 PF08631 SPO22: Meiosis protei 89.3 27 0.00059 35.6 23.4 59 504-562 128-191 (278)
281 PF09613 HrpB1_HrpK: Bacterial 89.3 11 0.00023 34.2 12.4 88 572-662 19-108 (160)
282 KOG1464 COP9 signalosome, subu 89.2 10 0.00022 37.0 12.9 265 386-661 21-329 (440)
283 PF13181 TPR_8: Tetratricopept 89.2 0.71 1.5E-05 29.2 3.8 31 633-663 3-33 (34)
284 KOG4648 Uncharacterized conser 89.2 1.3 2.9E-05 44.4 7.2 94 569-665 103-199 (536)
285 PF09205 DUF1955: Domain of un 88.6 15 0.00033 31.8 13.3 60 531-591 89-148 (161)
286 KOG2280 Vacuolar assembly/sort 88.5 50 0.0011 37.5 31.8 344 324-691 398-796 (829)
287 PF00637 Clathrin: Region in C 88.4 0.3 6.6E-06 44.1 2.2 86 140-231 12-97 (143)
288 PRK09687 putative lyase; Provi 87.5 36 0.00078 34.7 25.2 85 273-363 30-118 (280)
289 PF00515 TPR_1: Tetratricopept 87.3 1.3 2.8E-05 28.0 4.1 32 529-562 2-33 (34)
290 PF13176 TPR_7: Tetratricopept 86.8 1.2 2.6E-05 28.8 3.7 28 633-660 1-28 (36)
291 KOG4648 Uncharacterized conser 86.5 2.1 4.5E-05 43.1 6.7 93 535-632 104-199 (536)
292 PF13170 DUF4003: Protein of u 86.4 22 0.00048 36.4 14.5 93 513-608 119-226 (297)
293 COG3947 Response regulator con 86.0 33 0.00073 34.2 14.4 56 638-693 286-341 (361)
294 PF04097 Nic96: Nup93/Nic96; 85.8 22 0.00048 40.9 15.8 222 283-524 114-354 (613)
295 PF07035 Mic1: Colon cancer-as 85.5 30 0.00065 31.8 14.2 54 300-357 14-67 (167)
296 PF09613 HrpB1_HrpK: Bacterial 85.2 3.2 6.9E-05 37.5 6.7 53 642-694 21-73 (160)
297 COG2976 Uncharacterized protei 84.8 35 0.00075 32.0 14.7 113 546-663 70-191 (207)
298 PF04190 DUF410: Protein of un 84.8 42 0.0009 33.8 15.4 92 325-417 20-116 (260)
299 PRK09687 putative lyase; Provi 84.7 49 0.0011 33.7 24.1 61 389-451 35-99 (280)
300 PF13281 DUF4071: Domain of un 84.0 62 0.0013 34.2 21.1 72 395-468 145-224 (374)
301 KOG1586 Protein required for f 83.7 44 0.00095 32.3 14.1 64 602-665 116-188 (288)
302 TIGR02561 HrpB1_HrpK type III 83.7 4 8.6E-05 36.2 6.5 54 642-695 21-74 (153)
303 PF10602 RPN7: 26S proteasome 83.6 15 0.00033 34.3 11.0 57 499-555 38-100 (177)
304 KOG0276 Vesicle coat complex C 83.5 15 0.00033 40.2 11.9 19 288-306 729-747 (794)
305 PF06552 TOM20_plant: Plant sp 83.2 6.1 0.00013 36.4 7.7 46 647-692 51-100 (186)
306 KOG4279 Serine/threonine prote 83.1 77 0.0017 36.0 17.1 99 538-663 297-398 (1226)
307 PF13431 TPR_17: Tetratricopep 82.6 1.4 3.1E-05 28.0 2.6 20 563-582 13-32 (34)
308 PF10602 RPN7: 26S proteasome 82.6 26 0.00057 32.8 12.1 95 529-625 37-139 (177)
309 PF07719 TPR_2: Tetratricopept 82.4 3 6.4E-05 26.2 4.1 27 530-556 3-29 (34)
310 PF07035 Mic1: Colon cancer-as 82.3 41 0.00089 30.9 15.3 29 123-151 17-45 (167)
311 PRK10941 hypothetical protein; 81.5 9.8 0.00021 38.3 9.3 62 633-694 183-244 (269)
312 COG4785 NlpI Lipoprotein NlpI, 81.0 53 0.0011 31.4 15.9 161 387-591 95-265 (297)
313 PRK12798 chemotaxis protein; R 80.7 83 0.0018 33.5 21.2 175 501-678 114-303 (421)
314 PF14853 Fis1_TPR_C: Fis1 C-te 79.4 9.8 0.00021 27.2 6.1 51 667-743 3-53 (53)
315 COG4649 Uncharacterized protei 79.1 52 0.0011 30.2 13.7 88 505-592 102-196 (221)
316 PF13374 TPR_10: Tetratricopep 78.8 3 6.6E-05 27.6 3.5 29 666-694 3-31 (42)
317 PF13170 DUF4003: Protein of u 78.8 83 0.0018 32.3 15.3 126 442-571 80-225 (297)
318 TIGR02508 type_III_yscG type I 78.5 18 0.00038 29.6 7.8 24 263-286 53-76 (115)
319 KOG3364 Membrane protein invol 78.5 24 0.00051 30.9 9.1 63 631-693 32-99 (149)
320 KOG1258 mRNA processing protei 78.3 1.2E+02 0.0026 33.8 32.5 96 136-233 46-143 (577)
321 KOG1586 Protein required for f 78.3 68 0.0015 31.1 16.8 99 577-675 128-241 (288)
322 PF02259 FAT: FAT domain; Int 78.1 75 0.0016 33.5 15.8 66 629-694 144-213 (352)
323 PRK11619 lytic murein transgly 77.9 1.4E+02 0.0031 34.6 31.4 114 542-658 255-373 (644)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 77.4 19 0.00042 29.2 7.8 61 545-607 24-84 (103)
325 PF07721 TPR_4: Tetratricopept 76.8 3.6 7.7E-05 24.2 2.8 24 666-689 2-25 (26)
326 PF02284 COX5A: Cytochrome c o 76.6 20 0.00044 29.5 7.7 60 546-607 28-87 (108)
327 TIGR02561 HrpB1_HrpK type III 76.4 35 0.00076 30.5 9.9 50 182-233 22-73 (153)
328 smart00028 TPR Tetratricopepti 76.2 5.1 0.00011 23.9 3.9 29 634-662 4-32 (34)
329 PF13181 TPR_8: Tetratricopept 75.8 4.4 9.5E-05 25.4 3.4 27 530-556 3-29 (34)
330 PF13174 TPR_6: Tetratricopept 75.6 6 0.00013 24.4 4.0 26 638-663 7-32 (33)
331 KOG1308 Hsp70-interacting prot 75.4 1.9 4.1E-05 43.6 2.2 86 612-697 127-214 (377)
332 KOG1464 COP9 signalosome, subu 75.3 88 0.0019 30.8 17.3 132 421-556 23-173 (440)
333 PF14853 Fis1_TPR_C: Fis1 C-te 75.1 6.7 0.00014 28.0 4.3 31 637-667 7-37 (53)
334 KOG0276 Vesicle coat complex C 74.3 26 0.00056 38.6 10.2 102 400-523 646-747 (794)
335 PF10345 Cohesin_load: Cohesin 73.6 1.8E+02 0.0039 33.6 26.7 159 73-232 65-253 (608)
336 COG4455 ImpE Protein of avirul 73.6 40 0.00086 32.2 10.0 78 283-361 4-83 (273)
337 KOG4570 Uncharacterized conser 73.6 29 0.00062 35.0 9.5 92 496-591 63-163 (418)
338 PF13174 TPR_6: Tetratricopept 72.7 3.9 8.4E-05 25.3 2.5 28 667-694 2-29 (33)
339 PF13374 TPR_10: Tetratricopep 72.6 8.5 0.00018 25.3 4.4 27 530-556 4-30 (42)
340 COG4455 ImpE Protein of avirul 72.5 93 0.002 29.9 12.2 121 531-664 4-138 (273)
341 PF11207 DUF2989: Protein of u 71.1 21 0.00045 33.7 7.7 74 611-685 119-198 (203)
342 PF13934 ELYS: Nuclear pore co 70.8 92 0.002 30.5 12.7 106 531-645 79-186 (226)
343 KOG0686 COP9 signalosome, subu 69.0 1.6E+02 0.0035 31.2 15.0 60 497-556 150-215 (466)
344 KOG1550 Extracellular protein 68.9 2.1E+02 0.0045 32.6 16.9 150 541-697 262-429 (552)
345 PF06552 TOM20_plant: Plant sp 68.0 12 0.00027 34.4 5.4 64 544-609 51-123 (186)
346 KOG2066 Vacuolar assembly/sort 67.4 2.4E+02 0.0053 32.6 26.5 25 319-343 509-533 (846)
347 PF11207 DUF2989: Protein of u 66.6 47 0.001 31.4 9.0 74 545-619 123-198 (203)
348 PF07721 TPR_4: Tetratricopept 66.5 11 0.00024 22.1 3.3 21 501-521 5-25 (26)
349 KOG0890 Protein kinase of the 66.2 4.3E+02 0.0094 35.1 35.2 106 563-672 1670-1796(2382)
350 KOG0545 Aryl-hydrocarbon recep 66.1 84 0.0018 30.7 10.6 88 606-693 185-292 (329)
351 PF11768 DUF3312: Protein of u 65.6 69 0.0015 35.3 11.3 127 501-651 412-543 (545)
352 KOG4642 Chaperone-dependent E3 65.6 17 0.00037 35.1 5.9 81 613-693 24-106 (284)
353 PF09986 DUF2225: Uncharacteri 65.5 27 0.00058 33.9 7.6 64 631-694 118-194 (214)
354 PF00637 Clathrin: Region in C 65.5 9.3 0.0002 34.3 4.3 86 356-452 13-98 (143)
355 KOG4570 Uncharacterized conser 63.7 28 0.00061 35.1 7.2 103 386-491 59-165 (418)
356 KOG0376 Serine-threonine phosp 63.6 15 0.00033 39.3 5.8 87 607-693 12-100 (476)
357 PF14561 TPR_20: Tetratricopep 61.5 15 0.00033 29.8 4.4 44 651-694 8-51 (90)
358 PRK13800 putative oxidoreducta 61.3 3.8E+02 0.0083 32.8 23.5 183 495-692 696-879 (897)
359 cd00923 Cyt_c_Oxidase_Va Cytoc 60.6 52 0.0011 26.9 6.9 48 624-671 35-82 (103)
360 PF02284 COX5A: Cytochrome c o 60.1 56 0.0012 27.0 7.1 49 624-672 38-86 (108)
361 PRK15180 Vi polysaccharide bio 59.1 82 0.0018 33.8 10.0 51 539-590 334-384 (831)
362 KOG4234 TPR repeat-containing 58.8 47 0.001 31.2 7.4 82 507-590 105-195 (271)
363 PF10579 Rapsyn_N: Rapsyn N-te 58.6 24 0.00051 27.6 4.6 47 575-621 18-65 (80)
364 TIGR03504 FimV_Cterm FimV C-te 56.5 17 0.00036 24.8 3.2 27 669-695 3-29 (44)
365 PF04910 Tcf25: Transcriptiona 56.4 1.3E+02 0.0028 31.9 11.5 64 630-693 99-167 (360)
366 COG2976 Uncharacterized protei 56.1 1.8E+02 0.004 27.5 12.2 84 536-625 97-185 (207)
367 smart00028 TPR Tetratricopepti 55.7 23 0.00051 20.7 3.8 26 531-556 4-29 (34)
368 PF09670 Cas_Cas02710: CRISPR- 55.0 1.9E+02 0.0042 30.9 12.7 121 539-660 142-270 (379)
369 PF15469 Sec5: Exocyst complex 54.7 1.9E+02 0.0041 27.2 12.4 24 568-591 91-114 (182)
370 COG2909 MalT ATP-dependent tra 53.1 4.5E+02 0.0098 31.1 23.0 186 508-697 426-650 (894)
371 PF07720 TPR_3: Tetratricopept 53.0 34 0.00073 22.1 4.0 31 634-664 4-36 (36)
372 PF10579 Rapsyn_N: Rapsyn N-te 52.0 46 0.001 26.0 5.2 47 540-586 18-66 (80)
373 PF09477 Type_III_YscG: Bacter 51.7 1.3E+02 0.0028 25.2 8.0 29 312-342 68-96 (116)
374 smart00386 HAT HAT (Half-A-TPR 51.5 25 0.00053 21.3 3.4 29 645-673 1-29 (33)
375 TIGR02508 type_III_yscG type I 51.5 1.4E+02 0.003 24.7 9.2 58 506-566 48-105 (115)
376 KOG1550 Extracellular protein 51.2 4.2E+02 0.0091 30.2 16.3 178 51-233 229-426 (552)
377 COG4976 Predicted methyltransf 51.0 22 0.00049 34.1 4.1 58 608-665 4-63 (287)
378 KOG2300 Uncharacterized conser 50.1 3.8E+02 0.0082 29.3 29.6 322 364-693 61-473 (629)
379 KOG2396 HAT (Half-A-TPR) repea 49.7 3.9E+02 0.0084 29.3 31.6 462 116-668 87-568 (568)
380 COG4649 Uncharacterized protei 48.8 2.2E+02 0.0049 26.3 16.5 120 539-659 69-195 (221)
381 KOG0292 Vesicle coat complex C 48.3 20 0.00043 41.2 3.9 97 541-661 606-702 (1202)
382 PF14863 Alkyl_sulf_dimr: Alky 48.2 70 0.0015 28.6 6.7 70 615-687 57-126 (141)
383 PF07163 Pex26: Pex26 protein; 47.8 1.9E+02 0.0042 29.0 10.0 88 535-625 90-184 (309)
384 KOG2659 LisH motif-containing 46.9 1.6E+02 0.0036 28.5 9.2 93 530-625 28-129 (228)
385 COG3947 Response regulator con 46.7 3.3E+02 0.0071 27.6 15.4 61 172-232 281-341 (361)
386 KOG0551 Hsp90 co-chaperone CNS 45.9 96 0.0021 31.8 7.8 88 602-689 84-177 (390)
387 PHA02875 ankyrin repeat protei 45.6 3.6E+02 0.0078 29.2 13.5 79 110-196 9-91 (413)
388 PRK10941 hypothetical protein; 45.6 1.5E+02 0.0032 30.0 9.3 66 603-668 185-252 (269)
389 KOG4507 Uncharacterized conser 45.1 59 0.0013 35.8 6.6 99 575-676 619-721 (886)
390 KOG3807 Predicted membrane pro 44.9 2.9E+02 0.0062 28.3 10.8 114 534-666 281-397 (556)
391 KOG2471 TPR repeat-containing 44.8 4.5E+02 0.0098 28.7 15.0 102 505-609 248-379 (696)
392 cd08819 CARD_MDA5_2 Caspase ac 44.2 55 0.0012 26.2 4.7 66 52-120 20-86 (88)
393 PF12862 Apc5: Anaphase-promot 43.6 65 0.0014 26.3 5.5 53 641-693 8-69 (94)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 43.5 1.8E+02 0.0039 25.4 8.5 44 479-522 81-124 (126)
395 TIGR03504 FimV_Cterm FimV C-te 43.3 46 0.001 22.7 3.7 23 286-308 5-27 (44)
396 KOG0403 Neoplastic transformat 43.2 4.6E+02 0.0099 28.3 17.9 55 603-657 513-569 (645)
397 PRK11619 lytic murein transgly 43.1 6E+02 0.013 29.6 40.0 246 437-698 254-509 (644)
398 PF04190 DUF410: Protein of un 42.9 3.6E+02 0.0079 27.1 18.4 82 495-592 88-170 (260)
399 cd08819 CARD_MDA5_2 Caspase ac 42.8 1.5E+02 0.0033 23.8 6.9 39 509-548 48-86 (88)
400 PF14561 TPR_20: Tetratricopep 42.7 1.8E+02 0.0039 23.5 8.6 62 630-691 21-85 (90)
401 PF13929 mRNA_stabil: mRNA sta 42.4 3.8E+02 0.0083 27.2 14.3 58 594-651 197-258 (292)
402 KOG2063 Vacuolar assembly/sort 42.0 6.9E+02 0.015 30.0 16.3 130 206-362 506-638 (877)
403 KOG4642 Chaperone-dependent E3 41.4 2.7E+02 0.0059 27.3 9.6 115 509-625 22-143 (284)
404 PF11846 DUF3366: Domain of un 41.4 84 0.0018 29.8 6.8 33 630-662 143-175 (193)
405 KOG0292 Vesicle coat complex C 40.9 3.8E+02 0.0082 31.6 12.1 133 504-660 650-782 (1202)
406 COG1747 Uncharacterized N-term 40.9 5.3E+02 0.012 28.4 20.9 165 495-666 64-240 (711)
407 KOG2063 Vacuolar assembly/sort 40.4 7.3E+02 0.016 29.8 17.4 27 317-343 506-532 (877)
408 cd00280 TRFH Telomeric Repeat 40.0 1.2E+02 0.0026 28.2 6.9 30 637-667 117-146 (200)
409 KOG4521 Nuclear pore complex, 39.9 8.1E+02 0.017 30.2 14.9 84 501-585 924-1043(1480)
410 PRK13800 putative oxidoreducta 39.8 7.9E+02 0.017 30.1 25.8 183 389-591 696-880 (897)
411 KOG4077 Cytochrome c oxidase, 39.5 2.1E+02 0.0045 24.9 7.6 60 546-607 67-126 (149)
412 PF14669 Asp_Glu_race_2: Putat 39.2 3.4E+02 0.0073 25.6 15.9 60 465-524 136-208 (233)
413 PRK11509 hydrogenase-1 operon 37.3 1.1E+02 0.0023 27.0 6.0 70 704-790 30-100 (132)
414 PRK15180 Vi polysaccharide bio 37.0 5.8E+02 0.013 27.7 23.4 117 215-344 300-420 (831)
415 PRK10564 maltose regulon perip 36.7 64 0.0014 32.7 5.1 41 530-570 259-299 (303)
416 PRK10564 maltose regulon perip 36.6 59 0.0013 32.9 4.8 29 319-347 261-289 (303)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 35.4 3E+02 0.0065 24.0 9.4 43 546-588 81-124 (126)
418 PF11663 Toxin_YhaV: Toxin wit 35.4 55 0.0012 28.6 3.8 32 112-145 107-138 (140)
419 KOG0890 Protein kinase of the 35.4 1.3E+03 0.028 31.2 31.9 62 631-694 1670-1731(2382)
420 PF11848 DUF3368: Domain of un 34.4 1.4E+02 0.0031 20.7 5.2 33 539-571 13-45 (48)
421 KOG0687 26S proteasome regulat 34.3 5.4E+02 0.012 26.6 11.9 66 281-346 105-175 (393)
422 PF11848 DUF3368: Domain of un 34.1 1.3E+02 0.0029 20.9 5.0 34 325-358 12-45 (48)
423 PHA02875 ankyrin repeat protei 33.8 6.4E+02 0.014 27.2 18.0 129 58-196 19-158 (413)
424 PF11846 DUF3366: Domain of un 33.7 1.5E+02 0.0032 28.2 7.1 51 575-625 120-170 (193)
425 PF15161 Neuropep_like: Neurop 33.3 21 0.00046 25.2 0.8 18 789-807 11-28 (65)
426 PF14689 SPOB_a: Sensor_kinase 33.2 61 0.0013 24.1 3.4 24 567-590 27-50 (62)
427 PF10366 Vps39_1: Vacuolar sor 33.1 2.2E+02 0.0047 24.1 7.1 27 102-128 41-67 (108)
428 PF14689 SPOB_a: Sensor_kinase 32.8 98 0.0021 23.0 4.4 26 531-556 26-51 (62)
429 COG5159 RPN6 26S proteasome re 32.3 5.4E+02 0.012 26.0 15.1 28 434-463 13-40 (421)
430 PF13934 ELYS: Nuclear pore co 32.2 4.9E+02 0.011 25.5 13.9 112 510-630 91-203 (226)
431 PF10255 Paf67: RNA polymerase 31.8 1.8E+02 0.004 31.2 7.8 29 664-692 163-191 (404)
432 KOG2422 Uncharacterized conser 31.1 3.9E+02 0.0084 29.9 10.0 119 538-657 248-404 (665)
433 COG2912 Uncharacterized conser 30.8 3.5E+02 0.0077 27.1 9.0 59 635-693 185-243 (269)
434 PF10345 Cohesin_load: Cohesin 30.5 9E+02 0.02 28.0 40.1 58 635-692 538-604 (608)
435 PF09477 Type_III_YscG: Bacter 30.0 3.4E+02 0.0073 22.9 8.8 49 506-556 49-97 (116)
436 KOG3824 Huntingtin interacting 30.0 80 0.0017 31.8 4.4 62 609-670 126-189 (472)
437 PF08225 Antimicrobial19: Pseu 30.0 28 0.0006 19.0 0.7 12 795-806 10-21 (23)
438 KOG2300 Uncharacterized conser 29.9 7.8E+02 0.017 27.1 31.6 120 325-452 333-473 (629)
439 KOG0889 Histone acetyltransfer 29.8 1.8E+03 0.04 31.3 21.8 85 538-625 2746-2838(3550)
440 PRK13184 pknD serine/threonine 29.7 1.1E+03 0.024 28.8 24.7 396 101-553 476-896 (932)
441 PF10475 DUF2450: Protein of u 29.1 4.9E+02 0.011 26.7 10.4 53 396-452 103-155 (291)
442 PF13762 MNE1: Mitochondrial s 29.1 4.3E+02 0.0092 23.8 9.3 77 532-611 43-127 (145)
443 COG4941 Predicted RNA polymera 29.1 4.1E+02 0.0089 27.5 9.1 128 525-664 261-398 (415)
444 TIGR02710 CRISPR-associated pr 29.0 7.3E+02 0.016 26.5 11.6 26 537-562 139-164 (380)
445 COG5108 RPO41 Mitochondrial DN 28.7 4.7E+02 0.01 29.8 10.2 92 285-379 33-132 (1117)
446 KOG3824 Huntingtin interacting 28.7 82 0.0018 31.7 4.3 54 573-629 126-181 (472)
447 PF11663 Toxin_YhaV: Toxin wit 28.6 67 0.0014 28.1 3.2 30 293-324 108-137 (140)
448 COG0735 Fur Fe2+/Zn2+ uptake r 28.2 2.1E+02 0.0046 25.7 6.6 64 302-366 8-71 (145)
449 PF10475 DUF2450: Protein of u 27.8 5E+02 0.011 26.6 10.2 55 283-343 101-155 (291)
450 PF08424 NRDE-2: NRDE-2, neces 27.7 7.2E+02 0.015 25.9 14.9 114 544-661 47-184 (321)
451 COG2178 Predicted RNA-binding 27.4 5.4E+02 0.012 24.4 9.0 51 507-557 39-98 (204)
452 PF06957 COPI_C: Coatomer (COP 27.3 1.6E+02 0.0035 31.7 6.5 42 622-663 289-332 (422)
453 PF07163 Pex26: Pex26 protein; 27.2 4.8E+02 0.01 26.4 9.1 55 497-551 118-181 (309)
454 PF11817 Foie-gras_1: Foie gra 27.2 2E+02 0.0044 28.6 7.1 17 573-589 188-204 (247)
455 PF10366 Vps39_1: Vacuolar sor 27.2 3.8E+02 0.0083 22.6 8.0 27 530-556 41-67 (108)
456 COG1747 Uncharacterized N-term 27.0 9E+02 0.019 26.8 23.1 153 429-591 71-233 (711)
457 KOG1114 Tripeptidyl peptidase 27.0 1.2E+03 0.026 28.2 13.2 53 563-615 1231-1283(1304)
458 COG4941 Predicted RNA polymera 26.2 6.6E+02 0.014 26.1 10.0 111 512-625 271-391 (415)
459 KOG2297 Predicted translation 25.5 7.4E+02 0.016 25.4 11.4 256 3-308 131-399 (412)
460 KOG2422 Uncharacterized conser 25.3 1E+03 0.022 26.9 14.4 138 535-679 349-497 (665)
461 KOG1524 WD40 repeat-containing 24.7 3.2E+02 0.0069 30.0 7.9 87 600-689 574-668 (737)
462 KOG4279 Serine/threonine prote 24.3 3.2E+02 0.007 31.4 8.1 146 530-691 203-370 (1226)
463 PF04910 Tcf25: Transcriptiona 24.0 8.9E+02 0.019 25.7 15.4 98 562-662 99-224 (360)
464 cd00280 TRFH Telomeric Repeat 23.7 3.9E+02 0.0084 25.1 7.2 27 606-632 118-144 (200)
465 PF08424 NRDE-2: NRDE-2, neces 23.5 8.5E+02 0.018 25.3 13.0 78 153-231 49-129 (321)
466 KOG3507 DNA-directed RNA polym 22.5 32 0.00069 24.7 0.2 13 790-802 19-31 (62)
467 PF07575 Nucleopor_Nup85: Nup8 22.4 1.2E+03 0.026 26.7 17.2 26 204-230 149-174 (566)
468 KOG4507 Uncharacterized conser 22.1 4E+02 0.0086 29.8 8.1 54 399-452 650-704 (886)
469 PF11838 ERAP1_C: ERAP1-like C 21.9 8.8E+02 0.019 24.9 22.0 163 512-674 55-245 (324)
470 KOG3807 Predicted membrane pro 21.7 9E+02 0.019 25.0 9.9 54 501-554 279-337 (556)
471 PF04762 IKI3: IKI3 family; I 21.5 1.6E+03 0.034 27.7 16.7 29 316-344 813-843 (928)
472 PF13762 MNE1: Mitochondrial s 21.5 6E+02 0.013 22.8 11.4 77 500-576 42-128 (145)
473 PF09670 Cas_Cas02710: CRISPR- 21.1 7.7E+02 0.017 26.4 10.4 53 572-626 140-196 (379)
474 PRK11639 zinc uptake transcrip 20.9 3.1E+02 0.0068 25.3 6.5 39 577-616 39-77 (169)
475 KOG2034 Vacuolar sorting prote 20.6 1.5E+03 0.032 27.1 27.2 421 143-611 366-830 (911)
476 PF02184 HAT: HAT (Half-A-TPR) 20.5 2.2E+02 0.0048 18.0 3.5 25 646-671 2-26 (32)
477 KOG0545 Aryl-hydrocarbon recep 20.3 7.4E+02 0.016 24.5 8.7 62 602-663 233-296 (329)
478 KOG1308 Hsp70-interacting prot 20.0 1.1E+02 0.0024 31.5 3.5 114 576-692 127-242 (377)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-143 Score=1273.41 Aligned_cols=784 Identities=38% Similarity=0.693 Sum_probs=762.9
Q ss_pred CCChhHHHHHHHhcccCCCCCCc-hhHHHHHhcc---ChHHHHHHHHHHHHhcCCCCC--chHHHHHHhhCCCchhHHHH
Q 003273 16 PLTLNHLFTNIKLFSVTTTPCIK-ITSLLLRQCK---SLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSL 89 (834)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 89 (834)
.+.+.+|..+++.|...|++|+. ++..+++.|. .+..+.++|..+++.++.++. +|.|+.+|+++|+++.|.++
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~ 143 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHH
Confidence 36788999999999999999999 9999999986 688999999999999988777 89999999999999999999
Q ss_pred hcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCc
Q 003273 90 LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169 (834)
Q Consensus 90 f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 169 (834)
|++|++++. ++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+.+.|+.||
T Consensus 144 f~~m~~~d~--~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 144 FGKMPERDL--FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HhcCCCCCe--eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
+.++|+|+.+|+++|++++|.++|++|+.+ |.++||+||.+|++.|++++|+++|++|... |+.||..||+.++.+
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISA 297 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHH
Confidence 999999999999999999999999999988 9999999999999999999999999999999 999999999999999
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHH
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 325 (834)
|. +.|+++.|.+++..+. .||..+||+||.+|++.|++++|.++|++|.. ||.++||+||.+|
T Consensus 298 ~~---------~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 298 CE---------LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HH---------hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 99 6677788888887765 67999999999999999999999999999975 5999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCC
Q 003273 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405 (834)
Q Consensus 326 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 405 (834)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+. |..++..++|+|+++|+++|
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~------g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK------GLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh------CCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 485 (834)
++++|.++|++|. .+|+++||+||.+|+++|+.++|+.+|++|.. ++.||.+||+++|.+|++.|.++.++++|.
T Consensus 439 ~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~---~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh---CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999998 78999999999999999999999999999974 499999999999999999999999999999
Q ss_pred HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH
Q 003273 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565 (834)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 565 (834)
.+.+.|+. ++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+|
T Consensus 514 ~~~~~g~~-~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 514 HVLRTGIG-FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHhCCC-ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 99999999 99999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
|+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+|+|++++|.+++++|+.+||..+|++|+++|+.+|
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999997889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChH
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~ 725 (834)
+.+.|+.+++++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|++||.+||+.+
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhhhcccHHHHHHhchhcCCCCCcEEEeecccccCCcchhHHHHh
Q 003273 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805 (834)
Q Consensus 726 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~h~~~~~~s 805 (834)
+||.+|++|..+|++.||+||+..++ ++++++|+..+++||||||+|||||+||+|.||||+||||||+|||+++||||
T Consensus 752 ~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s 830 (857)
T PLN03077 752 EINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFIS 830 (857)
T ss_pred HHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHH
Confidence 99999999999999999999999888 55888999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEEEeCCcccccCCCcCCCCC
Q 003273 806 MIINHEIILRDSNRFHHFKEGSCTCKG 832 (834)
Q Consensus 806 ~~~~~~~~~~d~~~~h~~~~g~csc~~ 832 (834)
++++|||||||.+|||||++|+|||+|
T Consensus 831 ~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 831 KIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-120 Score=1050.09 Aligned_cols=608 Identities=37% Similarity=0.666 Sum_probs=565.6
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----CC
Q 003273 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VK 278 (834)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~ 278 (834)
+..+|+.+|.+|.+.|++++|+++|+.|....++.||..||+.++.+|+ +.++++.+.+++..|. .|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~---------~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI---------ALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHhCCCc
Confidence 3444555555555555555555555555443234455555555555554 3334444444444432 47
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 279 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
|..+||.++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 888899999999999999999999999975 6999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcC
Q 003273 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438 (834)
Q Consensus 359 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g 438 (834)
+|+..|..+.++++|..+.+. |..+|..++|+|+++|+++|++++|.++|++|. .+|+++||+||.+|+++|
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKT------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHh------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCC
Confidence 999999999999999999999 999999999999999999999999999999998 789999999999999999
Q ss_pred ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHH
Q 003273 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518 (834)
Q Consensus 439 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (834)
+.++|+++|++|.+ .|+.||..||++++.+|++.|.++.|+++|..+.+.|+. ++..++++|+++|+|+|++++|.+
T Consensus 305 ~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 305 YSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999998 899999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 519 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
+|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+
T Consensus 382 vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCcccccCChhh
Q 003273 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758 (834)
Q Consensus 679 g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~ 758 (834)
|+|++|.++++.|+++|++|.||+|||++++.+|.|++||.+||+..+||.++.+|..+|++.||+||+.++++|+++++
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccHHHHHHhchhcCCCCCcEEEeecccccCCcchhHHHHhhhhceEEEEEeCCcccccCCCcCCCCCCC
Q 003273 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834 (834)
Q Consensus 759 ~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~~ 834 (834)
|+..+++||||||+|||||++|+|.||||+||||||+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus 622 ~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 622 EKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-79 Score=726.14 Aligned_cols=680 Identities=25% Similarity=0.343 Sum_probs=598.2
Q ss_pred hhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003273 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMY 180 (834)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~ 180 (834)
.++|.++.++++.|++++|+.+|+.|...|++|+..+|..++++|...+.++.|.++|..+.+.|..++..++|+|+++|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
+++|+++.|.++|++|+++ |+++||++|.+|++.|++++|+++|++|... |+.||.+||+.++.+|+.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~---d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~-------- 199 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGG-------- 199 (857)
T ss_pred HhCCChHHHHHHHhcCCCC---CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCC--------
Confidence 9999999999999999988 9999999999999999999999999999998 999999999999999994
Q ss_pred hcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHH
Q 003273 261 QCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 336 (834)
.+++..+.+++..+. .+|..+||+||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|++
T Consensus 200 -~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 200 -IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred -ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHH
Confidence 445555566655544 68999999999999999999999999999975 499999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 337 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
+|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+. |+.||..++|+|+++|+++|++++|.++|++
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT------GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh------CCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccc
Q 003273 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496 (834)
Q Consensus 417 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 496 (834)
|. .||+++||+||.+|++.|++++|+++|++|.+ .|+.||..||++++.+|++.|+++.|.++|+.+.+.|+. ++
T Consensus 349 m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~~ 423 (857)
T PLN03077 349 ME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQ--DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI-SY 423 (857)
T ss_pred CC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC-cc
Confidence 98 79999999999999999999999999999999 899999999999999999999999999999999999999 99
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 576 (834)
..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999986 5999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
|.++.+.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.+++++
T Consensus 503 g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 503 GALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred chHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999986 499999999999999999999999999999999 69999999999999999999999999999
Q ss_pred HHhc--CCCCCchHHHHHHHHHhcCCchhHHHHHHHHH-hcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHH
Q 003273 657 LLEL--ESEKDGSYTLLSNIYANAGRWKDVARIRSLMK-HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733 (834)
Q Consensus 657 ~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~ 733 (834)
+.+. .| |..+|..++.+|.+.|++++|.++|+.|+ +.|+.++...-.. .+.....-+..++ ..+
T Consensus 580 M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~e----A~~ 646 (857)
T PLN03077 580 MVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTE----AYN 646 (857)
T ss_pred HHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHH----HHH
Confidence 9885 46 68899999999999999999999999998 6677653311000 0111111222233 233
Q ss_pred HHHHHHHcCcccCCCcccccCChhhhhhhhhcccHHHH-HHhchhcCCCCCcEEEeecccccCCcchhHHHHhhhhceEE
Q 003273 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA-LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812 (834)
Q Consensus 734 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~nl~~~~~~h~~~~~~s~~~~~~~ 812 (834)
+ +++.+..||....-.-+..+...+-+- --|+.| ..+.+.|..++.-+.+..-....|+-.++.+.-..|..+.+
T Consensus 647 ~---~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 647 F---INKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred H---HHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 3 444468888755433344442211110 012222 33556666556554444455678999999999988887732
Q ss_pred E-------EEeCCcccccCCCcCC
Q 003273 813 I-------LRDSNRFHHFKEGSCT 829 (834)
Q Consensus 813 ~-------~~d~~~~h~~~~g~cs 829 (834)
- |--.+..|-|..|--|
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCC
Confidence 1 1123567888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-67 Score=611.81 Aligned_cols=525 Identities=17% Similarity=0.260 Sum_probs=479.9
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCc---chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHc
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPF---SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 146 (834)
+..++..++++|++++|+++|++|+.++. +...++.++.+|.+.|..++|+.+|+.|.. ||..+|+.+|.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 88899999999999999999999987664 335567788889999999999999999863 99999999999999
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCC-CCcchHHHHHHHHHhCCChhHHHH
Q 003273 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEGGLM 225 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 225 (834)
+.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|.+.|+ ||..+|++||.+|++.|++++|++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999886 799999999999999999999999
Q ss_pred HHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC------CCChhHHHHHHHHHHcCCCHHHH
Q 003273 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK------VKDVVSWNAMVTGYSRIGSFEDA 299 (834)
Q Consensus 226 ~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~d~~~~~~li~~~~~~g~~~~A 299 (834)
+|++|.+. |+.||..||+.++.+|+ +.|++++|.++|++|. .||..+|++||.+|++.|++++|
T Consensus 529 lf~~M~~~-Gv~PD~vTYnsLI~a~~---------k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 529 AYGIMRSK-NVKPDRVVFNALISACG---------QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999998 99999999999999999 8899999999999984 57999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 379 (834)
.++|++|.+.|+.|+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC--CCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 003273 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK--NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457 (834)
Q Consensus 380 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~ 457 (834)
+.+||..+|++||.+|+++|++++|.++|++|... .||.++||.||.+|++.|++++|+++|++|.. .|+
T Consensus 679 ------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~--~Gi 750 (1060)
T PLN03218 679 ------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR--LGL 750 (1060)
T ss_pred ------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCC
Confidence 99999999999999999999999999999999643 48999999999999999999999999999999 899
Q ss_pred cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHH----HhcCCHHHHHHHHhhcCCCChhHHHH
Q 003273 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY----SRSGDIDTARVVFDNLKQRNVVSWTS 533 (834)
Q Consensus 458 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~g~~~~A~~~~~~~~~~~~~~~~~ 533 (834)
.||..||++++.+|++.|+++.|.++|..|.+.|+. ++..+|++|+.++ .++++..++...|+.+...+...|+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~- 828 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT- 828 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH-
Confidence 999999999999999999999999999999999999 9999999999874 4445554444455444333444454
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 613 (834)
++|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|+++++++++.
T Consensus 829 -----------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~- 895 (1060)
T PLN03218 829 -----------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY- 895 (1060)
T ss_pred -----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC-
Confidence 569999999999999999999999998887888888888888877543 7778889999999988543
Q ss_pred CHHHHHHHHHhC---CCCCCHH
Q 003273 614 RLDEAVELIEGM---PMEPTPI 632 (834)
Q Consensus 614 ~~~~A~~~~~~~---~~~p~~~ 632 (834)
.++|..++++| .+.|+..
T Consensus 896 -~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 -DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred -hHHHHHHHHHHHHcCCCCCcc
Confidence 46899999998 4556653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.2e-64 Score=579.82 Aligned_cols=512 Identities=19% Similarity=0.243 Sum_probs=425.5
Q ss_pred CcccHHHHHHHHccCCCchHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHH
Q 003273 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212 (834)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~ 212 (834)
+...|..++..|++.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.+|.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHH
Confidence 334455555555555555555555555555553 34444455555555555555555555555554 25555555555
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHc
Q 003273 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292 (834)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~ 292 (834)
+|++.|++++|.++|++|.+. |+ .||..+||+||.+|++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~-Gl----------------------------------------~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEA-GL----------------------------------------KADCKLYTTLISTCAK 484 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc-CC----------------------------------------CCCHHHHHHHHHHHHh
Confidence 555555555555555555544 33 4677888888888999
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHH
Q 003273 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 372 (834)
.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++
T Consensus 485 ~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC--CCccchHHHHHHHHhcCChhHHHHHHHhh
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--RDVATWTVMIGSYSQNGGANDALALFPQM 450 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m 450 (834)
+..+... ..+..||..+|++||.+|+++|++++|.++|+.|.+.+ |+..+||.+|.+|++.|++++|+++|++|
T Consensus 565 f~eM~~~----~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 565 LAEMKAE----THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHh----cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9998763 01688999999999999999999999999999998665 68899999999999999999999999999
Q ss_pred cccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CC
Q 003273 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----QR 526 (834)
Q Consensus 451 ~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~ 526 (834)
.+ .|+.||..||+.++.+|++.|+++.|.++|..|.+.|+. ++..+|++|+++|+++|++++|.++|++|. .|
T Consensus 641 ~~--~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 641 KK--KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HH--cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99 899999999999999999999999999999999999999 999999999999999999999999999995 69
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 606 (834)
|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++++
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLI 796 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCIT 796 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999764 9999999999999
Q ss_pred HHHh----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 607 DLLG----RAN-------------------RLDEAVELIEGM---PMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 607 ~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
+++. +++ ..++|..+|++| ...||..+|+++++++...+..+.+..+++.+...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 8743 332 246799999999 57799999999998777888888888877765432
Q ss_pred -CCCCCchHHHHHHHHHhcCCc-hhHHHHHHHHHhcCCccCC
Q 003273 661 -ESEKDGSYTLLSNIYANAGRW-KDVARIRSLMKHTGVKKRP 700 (834)
Q Consensus 661 -~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~ 700 (834)
.+.+..+|..|++.+ |++ ++|..+++.|.+.|+.++.
T Consensus 877 ~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 455678999999987 444 6899999999999998654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-65 Score=592.02 Aligned_cols=466 Identities=25% Similarity=0.429 Sum_probs=442.3
Q ss_pred hhHHHHHHHHHhCCCchhHHHHHHHHHHcC-CCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003273 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179 (834)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 179 (834)
.+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.|.++|..|.+.|+.||..++|.|+++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 799999999999999999999999998764 7899999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhh
Q 003273 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259 (834)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~ 259 (834)
|+++|++++|.++|++|+++ |.++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|+
T Consensus 168 y~k~g~~~~A~~lf~~m~~~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~-------- 235 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASA-------- 235 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCC---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHh--------
Confidence 99999999999999999987 9999999999999999999999999999998 99999999999999999
Q ss_pred hhcCcHHHHHHHHHhc----CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHH
Q 003273 260 KQCGMMEEAKKVFERM----KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335 (834)
Q Consensus 260 ~~~g~~~~A~~~~~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 335 (834)
+.|.++.+.+++..+ ..+|..+||+||++|+++|++++|.++|++|... |+++||+||.+|++.|++++|+
T Consensus 236 -~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 236 -GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred -cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHH
Confidence 455566666665544 3679999999999999999999999999999764 9999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHH
Q 003273 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 415 (834)
++|++|.+.|+.||..||++++.+|++.|.++.|+++|..+.+. ++++|..++++|+++|+++|++++|.++|+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT------GFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh------CCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCc
Q 003273 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEM 494 (834)
Q Consensus 416 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~ 494 (834)
+|. .+|+++||+||.+|++.|+.++|+++|++|.+ .|+.||.+||+++|.+|++.|.+++|.++|..|.+ .|+.
T Consensus 385 ~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~- 459 (697)
T PLN03081 385 RMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK- 459 (697)
T ss_pred hCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-
Confidence 998 79999999999999999999999999999999 89999999999999999999999999999999986 5888
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA 572 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 572 (834)
++..+|++++++|+++|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.|++.
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL 537 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH
Confidence 999999999999999999999999999998 79999999999999999999999999999976 6776 6789999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISA 597 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p 597 (834)
|++.|++++|.++++.|.++ |+.+
T Consensus 538 y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99999999999999999765 7653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-35 Score=357.30 Aligned_cols=646 Identities=11% Similarity=0.032 Sum_probs=396.9
Q ss_pred CCChhHHHHHHHhcccCCCCCCc---hhHHHHHhccChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhc
Q 003273 16 PLTLNHLFTNIKLFSVTTTPCIK---ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQ 91 (834)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~ 91 (834)
.+++.+|...+++.....+.... ....++...+....+...+..+....+.... .......+...|++++|...|+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 47788888888877644322111 2233334445777788777777766544333 3333444556778888888877
Q ss_pred ccCCCCcc-hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCch
Q 003273 92 RISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170 (834)
Q Consensus 92 ~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 170 (834)
+....+++ ...+..+...+...|++++|...|++..... +.+...+..+...+...|+.++|...+..+.+.. +.+.
T Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 363 (899)
T TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDP 363 (899)
T ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 76433321 1334445556667777788887777776542 2334445556666777777777777777776654 4556
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc-cchHhHHHH
Q 003273 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-VSLVNALSA 249 (834)
Q Consensus 171 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~~l~a 249 (834)
..++.+...|.+.|++++|...|+++....+.+...|..+...+...|++++|++.|+++.+. .|+. .....++..
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL---DPELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh---CCcchhhHHHHHHH
Confidence 677777777777777777777777776655556667777777777777777777777777643 2222 222233333
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHH
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 326 (834)
+. +.|+.++|..+++.+.. .+..+|+.+...|...|++++|...|+++.+..+. +...+..+...+.
T Consensus 441 ~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 510 (899)
T TIGR02917 441 YL---------RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDI 510 (899)
T ss_pred HH---------hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH
Confidence 33 45666666666665542 34556666677777777777777777766655433 4455666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCC
Q 003273 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406 (834)
Q Consensus 327 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 406 (834)
..|++++|.+.|+++.+.+. .+..++..+...+...|+.+.+...+..+.+. .+.+...+..++..|.+.|+
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-------NPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CccchhHHHHHHHHHHHCCC
Confidence 67777777777776665432 23445555666666666666666666666553 34445556666666666666
Q ss_pred hHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHH
Q 003273 407 VDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIH 484 (834)
Q Consensus 407 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~ 484 (834)
+++|..+++.+....| +...|..+...|.+.|++++|+..|+++.+ ..| +...+..+...+...|+++.|..++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA----LQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666654333 455666666666666666666666666654 223 2334555555666666666666666
Q ss_pred HHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003273 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561 (834)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 561 (834)
..+.+... .+...+..++..+.+.|++++|..+++.+. ..+...|..+...+...|++++|+..|+++.+ ..|
T Consensus 659 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~ 734 (899)
T TIGR02917 659 KRALELKP--DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAP 734 (899)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCC
Confidence 66665432 445566666666666666666666666665 23445566666666666666666666666666 345
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003273 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLN 639 (834)
Q Consensus 562 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 639 (834)
+..++..+..++...|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+..
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445555666666666666666666666654 22334556666666666666666666666655 12234556666666
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.+...|+ ..|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666 556666666666666666666666666666666666666666666544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-34 Score=353.50 Aligned_cols=550 Identities=13% Similarity=0.041 Sum_probs=450.6
Q ss_pred HhCCCchhHHHHHHHHHHcCCCCCc-ccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 003273 111 VRLRLPDNAFRLFLQMMRRGWHPDE-YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189 (834)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 189 (834)
...|++++|...|+++...+ |+. ..+..+...+...|+.+.|...+..+.+.. +.+...+..+...+.+.|++++|
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 34455555555555554432 221 122233344556777777777777777654 44566777888888899999999
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccc-hHhHHHHhhccCCchhhhhcCcHHHH
Q 003273 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS-LVNALSACASLGTWSRGKQCGMMEEA 268 (834)
Q Consensus 190 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~~l~a~~~~~~~~~~~~~g~~~~A 268 (834)
...++.+....+.+...|+.+...|.+.|++++|.++|+++.+. .|+... +..+...+. ..|+.++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~---------~~~~~~~A 416 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL---DPENAAARTQLGISKL---------SQGDPSEA 416 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH---------hCCChHHH
Confidence 99998887776667888999999999999999999999988743 454433 333333333 67888999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003273 269 KKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345 (834)
Q Consensus 269 ~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 345 (834)
.+.|+.... .+...+..++..|.+.|++++|..+++++....+. +..+|+.+...+...|++++|.+.|+++.+..
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999887653 24556778889999999999999999999876443 78899999999999999999999999998754
Q ss_pred CCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-Cc
Q 003273 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DV 424 (834)
Q Consensus 346 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~ 424 (834)
. .+...+..+...+...|+++.+...+..++.. .+.+..++..+...|.+.|+.++|...|+++....| +.
T Consensus 496 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 567 (899)
T TIGR02917 496 P-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567 (899)
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 2 33456677788888999999999999999874 466788999999999999999999999999875555 56
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 425 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
..+..++..|.+.|++++|+.+++++.. . ...+..++..+..++...|+++.|...+..+.+... .++..+..+.
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~ 642 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAAD--A-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLA 642 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHH
Confidence 7788899999999999999999999986 2 234566788889999999999999999999988653 5677888999
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 581 (834)
..|.+.|++++|..+|+++. ..+..+|..++..+...|++++|..+++.+.+.+ .++...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887 3467899999999999999999999999999853 3357778888899999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|...|+.+.+ ..|+...+..++.++.+.|++++|.+.++++ ..+.+...+..+...|...|+.+.|...++++++
T Consensus 722 A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999874 4566688889999999999999999999887 2234677888888899999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 660 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..|+++.++..++.+|...|+ ++|..+++++.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999 8899999988765
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.4e-34 Score=245.19 Aligned_cols=106 Identities=61% Similarity=1.074 Sum_probs=97.7
Q ss_pred ceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhh--------hhhhhcccHHHHH
Q 003273 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK--------GDLLFEHSEKLAL 772 (834)
Q Consensus 701 ~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~e~la~ 772 (834)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999976 9999999999998 455677888999999999998877765 6688999999999
Q ss_pred HhchhcCCCCCcEEEeecc-cccCCcchhHHHHhhhhceEEEEEeCCcccccC
Q 003273 773 AYGILTTAPGTPIRITKNL-RICGDCHSAITFISMIINHEIILRDSNRFHHFK 824 (834)
Q Consensus 773 ~~~~~~~~~~~~~~~~~nl-~~~~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 824 (834)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.9e-24 Score=263.53 Aligned_cols=388 Identities=11% Similarity=0.029 Sum_probs=206.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhHHH-----------
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP-NVVTLV----------- 354 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~----------- 354 (834)
...+...|++++|+..|++..+..+. +...+..+...|.+.|++++|+..|++..+..... +...+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45566677777777777777665443 56667777777777777777777777766543211 111111
Q ss_pred -HHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHH
Q 003273 355 -SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIG 432 (834)
Q Consensus 355 -~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~ 432 (834)
.....+...|++++|...+..++.. .|.+...+..|...|.+.|++++|++.|+++....|+ ...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV-------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1122345666777777777777663 3445566666777777777777777777776654443 334444444
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcC--------CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKP--------NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
.|. .++.++|+.+++.+.. ..... ....+......+...|++++|.+.+..+++... .++.++..+.
T Consensus 428 l~~-~~~~~~A~~~l~~l~~--~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA 502 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSA--SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLA 502 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCH--HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 443 3455666666555432 10000 001122233444455666666666666665443 3455555566
Q ss_pred HHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh---------HHHHHHHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV---------TFLVLLYA 572 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a 572 (834)
..|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++......++.. .+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 66666666666666666553 22 33334334444455566666666555543221111110 11223344
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 650 (834)
+...|+.++|..+++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..+...+...|+.++|
T Consensus 583 l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555441 1223334445555555555555555555544 1222 244555555555555555555
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++.++++.+..|+++..+..++.++...|++++|.++++.+..
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5555555555555555555555555555555555555555543
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.7e-24 Score=257.72 Aligned_cols=610 Identities=11% Similarity=0.040 Sum_probs=445.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhcccCCCCc-chhhH----------------HHHHHHH
Q 003273 49 SLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRISPSPF-SVFWW----------------NALIRRA 110 (834)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~----------------~~li~~~ 110 (834)
+.+.+.+...+++...+.... ...+...+...|+.++|.+.+++....++ +...+ ..+.+.+
T Consensus 43 ~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 43 REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 778888888888766544333 78888889999999999999999854333 11222 2234467
Q ss_pred HhCCCchhHHHHHHHHHHcCCCCCccc-HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 003273 111 VRLRLPDNAFRLFLQMMRRGWHPDEYT-FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189 (834)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 189 (834)
.+.|++++|+..|+.+.... +|+... ...........++.++|...++.+++.. +.+...+..+...+...|+.++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH
Confidence 88999999999999988642 333321 1112222335689999999999999875 55677888999999999999999
Q ss_pred HHHHHhcCCCCCCC---cchHH-----------------HHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 190 RQLFDEMFQPGICD---IVSWN-----------------TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 190 ~~~~~~m~~~~~~~---~~~~~-----------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
+..|+++......+ ...|. ..+..+-.....+.|...+.++... ...|+.... ..-.+
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~~-~~G~~ 278 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRAR-AQGLA 278 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHHH-HHHHH
Confidence 99999986542111 11121 1111111122233444444444322 112221110 00111
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCC-eeeHHHH----
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN-VVTWSAV---- 321 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l---- 321 (834)
+. ..|++++|+..|++... .+...+..+...|.+.|++++|+..|++..+...... ...|..+
T Consensus 279 ~~---------~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 279 AV---------DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HH---------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 11 67899999999988763 3778899999999999999999999999987654321 1223222
Q ss_pred --------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 322 --------IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 322 --------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
...+.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.+..+++. .+.+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-------~p~~~~a 421 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM-------DPGNTNA 421 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH
Confidence 3456789999999999999998642 23455667778889999999999999999984 4556667
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCC----------ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcc-
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRD----------VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF- 462 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~- 462 (834)
+..+...|. .++.++|...++.+....+. ...+..+...+...|++++|++.|++.++ ..|+..
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~----~~P~~~~ 496 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA----LDPGSVW 496 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHH
Confidence 777888875 46789999999887633221 22355667788899999999999999987 667653
Q ss_pred cHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC----Chh---------
Q 003273 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR----NVV--------- 529 (834)
Q Consensus 463 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~--------- 529 (834)
.+..+...+...|+.++|...++.+++... .++.....+...+.+.|+.++|...++.+... +..
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 456677788999999999999999987543 45666666666788899999999999988632 111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 609 (834)
.+..+...+...|+.++|+.+++. ..++...+..+...+...|++++|+..|+.+.+. -+.+...+..++.+|
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 123446678889999999999882 2344667778888999999999999999999852 233577889999999
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCc
Q 003273 610 GRANRLDEAVELIEGMP-MEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG------SYTLLSNIYANAGRW 681 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~ 681 (834)
...|++++|++.++... ..| +...+..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 99999999999999874 334 4567778888889999999999999999998776543 566779999999999
Q ss_pred hhHHHHHHHHHh
Q 003273 682 KDVARIRSLMKH 693 (834)
Q Consensus 682 ~~a~~~~~~m~~ 693 (834)
++|...++....
T Consensus 728 ~~A~~~y~~Al~ 739 (1157)
T PRK11447 728 QQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-23 Score=212.58 Aligned_cols=451 Identities=14% Similarity=0.110 Sum_probs=345.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003273 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182 (834)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~ 182 (834)
-..|.....+.|++.+|.+.-...-..+ +.+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556667778999999998544333221 2222233333344445455554433333333322 3446788889999999
Q ss_pred CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhc
Q 003273 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262 (834)
Q Consensus 183 ~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~ 262 (834)
.|++.+|...++.+.+..+..+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~---------------- 189 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSD---------------- 189 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcc----------------
Confidence 99999999999999988777889999999999999999999999988873 45543332211
Q ss_pred CcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 263 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
+...+-..|++++|...+.+..+..+. =.+.|+.|...+-..|+...|+..|++.+
T Consensus 190 -----------------------lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 190 -----------------------LGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred -----------------------hhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 122233467788888888877776443 56789999888888999999999888887
Q ss_pred HCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC
Q 003273 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422 (834)
Q Consensus 343 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 422 (834)
+. .|.-...|-.|...|...+.++.|...|.+.....|
T Consensus 246 kl------------------------------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 246 KL------------------------------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred cC------------------------------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 62 222234566777888888888888888888765556
Q ss_pred -CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHh
Q 003273 423 -DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501 (834)
Q Consensus 423 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 501 (834)
..+.+..|...|..+|..+-|+..|++.++ +.| .-+..|+
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P-----------------------------------~F~~Ay~ 324 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALE----LQP-----------------------------------NFPDAYN 324 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHh----cCC-----------------------------------CchHHHh
Confidence 467788888888999999999999999877 566 4456677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSG 577 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 577 (834)
.|..++-..|++.+|.+.|++.. .| -..+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-+.|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc
Confidence 77788888888888888888776 23 355778888899999999999999999888 8888 677889999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 003273 578 MVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAA 654 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 654 (834)
++++|+..+++.. .|+|+ .+.|+.|...|-..|+.++|.+.+.+. .+.|. ....+.|.+.+...|++++|+..|
T Consensus 403 nl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999998876 68887 568899999999999999999998877 45565 457889999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCCchhH
Q 003273 655 NRLLELESEKDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 655 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 684 (834)
+.+++++|+.+.+|..|+.++--.-.|.+-
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 999999999999999999998888888773
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.5e-20 Score=218.39 Aligned_cols=572 Identities=10% Similarity=0.000 Sum_probs=382.0
Q ss_pred hhCCCchhHHHHhcccCCCCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHH
Q 003273 78 VSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156 (834)
Q Consensus 78 ~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (834)
...|++++|...|++....++ +...+..|...|...|++++|+..+++..+. .|+...|..++... ++.++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 344999999999998754333 3478889999999999999999999998874 56655555555333 78888999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH--------HHhCCChhHHHHHHHhcCCCCCCCcc-hHHHHHHHHHhCCChhHHHHHH
Q 003273 157 VHAVICSSGFDSNVFVCNALMAM--------YARCDTLSYARQLFDEMFQPGICDIV-SWNTIVAAYAQSGDAEGGLMLF 227 (834)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~Li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 227 (834)
+++++.+.. +.+..++..+... |.+.+....++. .+.... .|+.. ..-.+...|.+.|++++|++++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~-~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA-SPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC-CCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999875 4556666666665 666644444444 222111 12333 3444588999999999999999
Q ss_pred HHhhhCCCCCCCccc-hHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003273 228 ARMTGDVKVQGDGVS-LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306 (834)
Q Consensus 228 ~~m~~~~~~~p~~~t-~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 306 (834)
.++.+. + |.... ...+-.++.. ..++ +++..+++.....|...+..+...|.+.|+.++|..+++++
T Consensus 206 ~~L~k~-~--pl~~~~~~~L~~ay~q--------~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 206 NEARQQ-N--TLSAAERRQWFDVLLA--------GQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHhc-C--CCCHHHHHHHHHHHHH--------hhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 999976 3 33333 3333334431 1233 77777766544568899999999999999999999999998
Q ss_pred HhcCCC-CCeeeHHHH------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 003273 307 RQENVK-LNVVTWSAV------------------------------IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355 (834)
Q Consensus 307 ~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 355 (834)
...-.. |...+|--+ +..+.+++.++-+.++. .+.|.....
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 345 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML-- 345 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--
Confidence 765333 333333322 23334444444333221 133333321
Q ss_pred HHHhh--hhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC----ccchHH
Q 003273 356 LLSGC--ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD----VATWTV 429 (834)
Q Consensus 356 ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~~~ 429 (834)
.++.. ...+...++.+....+.+ ..+.+....--+.....+.|+.++|.++|+......++ ...-+-
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~-------~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQ-------QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 22221 122344444455555444 22445555555666677889999999999987653322 233446
Q ss_pred HHHHHHhcCC---hhHHHHHHH----------------------hhcccCCCCcCC--cccHHHHHHHHhhhhhHHHHHH
Q 003273 430 MIGSYSQNGG---ANDALALFP----------------------QMFQQDKLVKPN--AFTLSCALMACARLAALRFGRQ 482 (834)
Q Consensus 430 li~~~~~~g~---~~~A~~l~~----------------------~m~~~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~ 482 (834)
++..|.+.+. ..+++.+-. ..... -+..|+ .......+..|...+..++|..
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~p~~~~~~a~~~LG~~l~~~~~~eAi~ 497 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL-LGDMSPSYDAAAWNRLAKCYRDTLPGVALY 497 (987)
T ss_pred HHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh-cccCCCCCCHHHHHHHHHHHHhCCcHHHHH
Confidence 7777777766 333433311 11110 112233 2222222333333477777888
Q ss_pred HHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003273 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560 (834)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 560 (834)
.+....... ++......+...+...|++++|...|+++. .|+...+..+...+.+.|+.++|...|++.++. .
T Consensus 498 a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~ 572 (987)
T PRK09782 498 AWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--G 572 (987)
T ss_pred HHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 776666544 222223344555568999999999998776 355566777778888999999999999999884 4
Q ss_pred CCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 003273 561 PDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVAL 637 (834)
Q Consensus 561 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 637 (834)
|+. ..+..+.......|++++|...++... .+.|+...|..+..++.+.|++++|++.+++. ...|+ ...+..+
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 653 334344445566799999999999887 45677888999999999999999999999887 34454 5677888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999999999999999999999999999999888764
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.5e-20 Score=218.34 Aligned_cols=639 Identities=11% Similarity=0.002 Sum_probs=405.1
Q ss_pred CCCChhHHHHHHHhcccCCCCCCc---hhHHHHHhccChHHHHHHHHHHHHhcCCCCCchHHHHHHhhCCCchhHHHHhc
Q 003273 15 TPLTLNHLFTNIKLFSVTTTPCIK---ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQ 91 (834)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~ 91 (834)
.++++.+|++.+++.....+.... .+...+...+..++|.......++..+....+..++ ...++.+.|..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L---a~i~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL---AAIPVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---HHhccChhHHHHHH
Confidence 358888999999888743333211 333334445588888888888777654211133323 22288888999999
Q ss_pred ccCCCCcc-hhhHHHHHHH--------HHhCCCchhHHHHHHHHHHcCCCCCcccHHHH-HHHHccCCCchHHHHHHHHH
Q 003273 92 RISPSPFS-VFWWNALIRR--------AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV-LKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 92 ~~~~~~~~-~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~ 161 (834)
++...+++ ...+..+... |.+. ++|...++ .......|+..+.... .+.|...++++++..++..+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 87543331 1333333333 5544 55555555 3332233345444444 78899999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHh-CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc
Q 003273 162 CSSGFDSNVFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240 (834)
Q Consensus 162 ~~~g~~~~~~~~~~Li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 240 (834)
.+.+ +.+......|..+|.. .++ +.|..+++...+. |...+..+...|.+.|+.++|.+.++++.....-.|+.
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~---d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFT---DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhccc---CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 9987 4556667778888887 477 8888887654444 88999999999999999999999999998652334666
Q ss_pred cchHhHHHHhhccC-----Cc----------------hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHH--HcCCCHH
Q 003273 241 VSLVNALSACASLG-----TW----------------SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY--SRIGSFE 297 (834)
Q Consensus 241 ~t~~~~l~a~~~~~-----~~----------------~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~--~~~g~~~ 297 (834)
.++.-.+.-..... .+ +...+.+.++-+.++.+ ....+. . ..+..+ ...+...
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchh
Confidence 66555444332210 00 00004445554444422 211122 1 122222 2335666
Q ss_pred HHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHhhhhhchhhhhhHHHHH
Q 003273 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLSGCASVGALLLGKETHCY 375 (834)
Q Consensus 298 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 375 (834)
++...++.|...... +.....-+--...+.|+.++|..+|+..... ...++.....-++..+.+.+.+.....+...
T Consensus 360 ~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 666666666655222 4444444444566788888888888887662 1223333444666666665543332222111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-C--CccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-R--DVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+.+.+...-..+ ..+.-....+...+....... + +...|..+..++.. +++++|+..|.+...
T Consensus 439 ----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 439 ----------SKPLPLAEQRQW---QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred ----------ccccccchhHHH---HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 000111000000 011111122333343333222 2 45566666666665 677778877777665
Q ss_pred cCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH
Q 003273 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532 (834)
Q Consensus 453 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~ 532 (834)
..|+......+..++...|+++.|...+..+.... +.......+...+.+.|++++|...|+...+.++..++
T Consensus 505 ----~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~---p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 505 ----RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD---MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred ----hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 44665443334444456777888877777765432 23334456677788889999999999887743332233
Q ss_pred H---HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 003273 533 S---LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDL 608 (834)
Q Consensus 533 ~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~ 608 (834)
. +.......|++++|+..|++.++ ..|+...+..+..++.+.|++++|...++...+ +.| +...+..+..+
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 2 22333445999999999999988 678878888888899999999999999998873 445 46678888889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHH
Q 003273 609 LGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 686 (834)
+...|++++|++.+++. ...| +...|..+..++...|+.+.|+..++++++++|++..+....+++.....+++.+.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999877 3344 467888999999999999999999999999999998999999999999998888888
Q ss_pred HHHHHHhcCC
Q 003273 687 IRSLMKHTGV 696 (834)
Q Consensus 687 ~~~~m~~~~~ 696 (834)
-++..-...+
T Consensus 733 ~~~r~~~~~~ 742 (987)
T PRK09782 733 EVGRRWTFSF 742 (987)
T ss_pred HHHHHhhcCc
Confidence 7766654433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-21 Score=198.57 Aligned_cols=362 Identities=13% Similarity=0.142 Sum_probs=293.7
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 279 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
-..+|..+.+.+-..|++++|+.+++.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++. .|+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca----- 186 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCA----- 186 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhh-----
Confidence 4568889999999999999999999999988666 7889999999999999999999999988763 2443332
Q ss_pred hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhc
Q 003273 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQN 437 (834)
Q Consensus 359 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~ 437 (834)
.+.+....-..|++++|...|.+..+..|. .+.|+.|...+-.+
T Consensus 187 -----------------------------------~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~ 231 (966)
T KOG4626|consen 187 -----------------------------------RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQ 231 (966)
T ss_pred -----------------------------------hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhc
Confidence 223333444456666666666665544553 46677777777777
Q ss_pred CChhHHHHHHHhhcccCCCCcCCc-ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHH
Q 003273 438 GGANDALALFPQMFQQDKLVKPNA-FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516 (834)
Q Consensus 438 g~~~~A~~l~~~m~~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 516 (834)
|+...|+..|++... +.|+- ..|..+-..+...+.++.|...+....... |....++..|...|...|.++-|
T Consensus 232 Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred chHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHH
Confidence 777777777777765 56653 245555555666666666665555554433 25666777788889999999999
Q ss_pred HHHHhhcC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003273 517 RVVFDNLK--QRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592 (834)
Q Consensus 517 ~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (834)
...|++.. +|+ ...|+.|..++-..|++.+|...|.+.+. +.|+ ....+.|...+...|.+++|..+|....
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-- 381 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-- 381 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH--
Confidence 99999987 454 56899999999999999999999999999 7888 7889999999999999999999999876
Q ss_pred cCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 593 FGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 593 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
.+.|. ....+.|...|-.+|++++|+..+++. .++|+ ...++.+.+.|...|++..|.+.+.+++.++|.-+.++.
T Consensus 382 -~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 382 -EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred -hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 56666 567889999999999999999999887 67787 558999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 670 LLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+.+|-..|+..+|+.-++...+.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999988764
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.3e-17 Score=187.96 Aligned_cols=424 Identities=11% Similarity=0.046 Sum_probs=271.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHH
Q 003273 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285 (834)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~ 285 (834)
.+......|.+.|++++|+..|++.... . |+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~----------------------------------------p~~~~~~n 165 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---K----------------------------------------PDPVYYSN 165 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---C----------------------------------------CchHHHHH
Confidence 3556677788888888888888877632 3 33445566
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhch
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 365 (834)
+..+|.+.|++++|++.+++..+..+. +...|..+..+|...|++++|+..|......+-..+. ....++.....
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~--- 240 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK--- 240 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH---
Confidence 666677777777777777777765433 4556777777777777777777766655443211111 11111111111
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHH---HhcCChh
Q 003273 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSY---SQNGGAN 441 (834)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~---~~~g~~~ 441 (834)
..+.......++ ..+.+...+..+...+ .....+.+..-++......++ ...+..+...+ ...++++
T Consensus 241 -~~a~~~~~~~l~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 241 -KFAESKAKEILE-------TKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred -HHHHHHHHHHHh-------cCCCCCCCHHHHHHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence 011111111111 1112211222222211 111111111111111111111 11111111111 2235677
Q ss_pred HHHHHHHhhcccCCC-CcCCc-ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHH
Q 003273 442 DALALFPQMFQQDKL-VKPNA-FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519 (834)
Q Consensus 442 ~A~~l~~~m~~~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 519 (834)
+|++.|++.+. .+ ..|+. ..+..+...+...|+++.|...+..+++... .....+..+...|...|++++|...
T Consensus 312 ~A~~~~~~al~--~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 312 EAARAFEKALD--LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777765 22 23432 3344444555667777788777777776532 4566777888889999999999999
Q ss_pred HhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 520 FDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 520 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
|+.+. ..+...|..+...+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|+..|+...+. .
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 99876 34577899999999999999999999999998 6676 666778888899999999999999988752 3
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTP-------I-IWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
+.+...+..+..+|...|++++|++.|++. ...|+. . .++..+..+...|++++|+..++++++++|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 334778889999999999999999999885 333321 1 1222222344469999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 667 SYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++..++.+|...|++++|.+.++...+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=9e-19 Score=190.76 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=142.9
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCc
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~ 256 (834)
...+...|++++|...|+++.+.++.+..+|..+...|...|++++|+.+++.+... +..++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~----------------- 103 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTR----------------- 103 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCH-----------------
Confidence 345567889999999999998877667778899999999999999999999888753 11100
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHH
Q 003273 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336 (834)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 336 (834)
......+..+...|.+.|++++|..+|+++.+.... +..+++.++..+.+.|++++|++
T Consensus 104 --------------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 162 (389)
T PRK11788 104 --------------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAID 162 (389)
T ss_pred --------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHH
Confidence 011245677788888889999999999988875333 66788888899999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 337 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
.++.+.+.+..++... ....+..+...|.+.|++++|...|++
T Consensus 163 ~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 163 VAERLEKLGGDSLRVE-------------------------------------IAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHhcCCcchHH-------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999887543221100 011234455666777777777777777
Q ss_pred cCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 417 IAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 417 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+.+..|+ ...+..+...|.+.|++++|+++|+++..
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6644443 44566667777777777777777777765
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.5e-18 Score=185.27 Aligned_cols=294 Identities=15% Similarity=0.146 Sum_probs=193.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 003273 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400 (834)
Q Consensus 321 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 400 (834)
....+...|++++|+..|+++.+.+ +.+..++..+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------------------------------------------p~~~~~~~~la~~ 78 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------------------------------------------PETVELHLALGNL 78 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------------------------------------------cccHHHHHHHHHH
Confidence 3445567788888888888887632 2233344555555
Q ss_pred HHhCCChHHHHHHHHhcCCCCCC-----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhh
Q 003273 401 YAKCKSVDVARVMFDAIAPKNRD-----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475 (834)
Q Consensus 401 y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~ 475 (834)
|.+.|++++|..+++.+....+. ...+..++..|.+.|++++|+.+|+++.+ ..|
T Consensus 79 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~----~~~---------------- 138 (389)
T PRK11788 79 FRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD----EGD---------------- 138 (389)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----CCc----------------
Confidence 66666666666666655432111 13455566666666666666666666654 122
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC------hhHHHHHHHHHHHcCChHHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN------VVSWTSLMTGYGMHGLGDKA 547 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A 547 (834)
.+...++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|+.++|
T Consensus 139 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 139 -------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred -------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 2233344555555555555555555555531 11 11344566667777888888
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 548 HWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR--AEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
...|+++.+ ..|+ ...+..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.+++
T Consensus 200 ~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 200 RALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888777 3454 456666777788888888888888877642 233 45567788888888888888888887
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchhHHHHHHHHHhcCCccCC
Q 003273 625 M-PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN---AGRWKDVARIRSLMKHTGVKKRP 700 (834)
Q Consensus 625 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~ 700 (834)
+ ...|+...+..+...+...|+.+.|...++++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6 3456666667788888899999999999999999999765 45555555443 56899999999999999888888
Q ss_pred c
Q 003273 701 G 701 (834)
Q Consensus 701 ~ 701 (834)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 6
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.6e-15 Score=164.73 Aligned_cols=548 Identities=13% Similarity=0.076 Sum_probs=374.2
Q ss_pred chhHHHHHHHHHHcCCCCCcccHHHHHHHHc--cCCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChhHHHH
Q 003273 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACG--ELPSSRCGSSVHAVICSSG--FDSNVFVCNALMAMYARCDTLSYARQ 191 (834)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~ 191 (834)
.+.|...|....+.. +++. ...+.++|. ..+++..|..+|..++... ..||+.+. +...+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 478888888777652 3332 334556664 5578889999999876543 45665543 2356678999999999
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHHhCC---ChhHHHHHHHHhhhCCCCCCCcc-chHhHHHHhhccCCchhhhhcCcHHH
Q 003273 192 LFDEMFQPGICDIVSWNTIVAAYAQSG---DAEGGLMLFARMTGDVKVQGDGV-SLVNALSACASLGTWSRGKQCGMMEE 267 (834)
Q Consensus 192 ~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~-t~~~~l~a~~~~~~~~~~~~~g~~~~ 267 (834)
.|.+..+-+|.++.++-.|.-.-.... .+..++.++...- ...|+.. ..+.+-..+. -.|++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay---~~n~~nP~~l~~LAn~fy---------fK~dy~~ 288 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY---KENNENPVALNHLANHFY---------FKKDYER 288 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH---hhcCCCcHHHHHHHHHHh---------hcccHHH
Confidence 999988885544444433333323333 3445555555544 3344333 3333334444 3466666
Q ss_pred HHHHHHhcCCC------ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 003273 268 AKKVFERMKVK------DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341 (834)
Q Consensus 268 A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 341 (834)
+..+...+... -...|--+..+|-..|++++|...|.+.......--+..+--+...|.+.|+.+.+...|+..
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 66665554422 234588899999999999999999987776533311445566788899999999999999999
Q ss_pred HHCCCCCCH-hHHHHHHHhhhhhc----hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCCh------HHH
Q 003273 342 QFCGLEPNV-VTLVSLLSGCASVG----ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV------DVA 410 (834)
Q Consensus 342 ~~~g~~pd~-~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~------~~A 410 (834)
.+.. ||. .|...+-..|+..+ ..+.|..+.....+ ..+.|...|-.+..+|....-. ..|
T Consensus 369 ~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-------~~~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 369 LKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE-------QTPVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh-------cccccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8743 554 35544444455443 45666667766666 4477888888888887665433 334
Q ss_pred HHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhccc-CCCCcCCc-----ccHHHHH-HHHhhhhhHHHHHHH
Q 003273 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ-DKLVKPNA-----FTLSCAL-MACARLAALRFGRQI 483 (834)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~g~~p~~-----~t~~~ll-~a~~~~~~~~~a~~~ 483 (834)
..++..... ..-+...|.+..-+...|++++|...|.+.... ..-..+|. +|...-+ ......++.+.|.++
T Consensus 440 ~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 440 LDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 433333322 246677899999999999999999999998762 00123333 2222233 334556789999999
Q ss_pred HHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-C
Q 003273 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-L 559 (834)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~ 559 (834)
+..+++... .-+..|--|.-+--..+...+|...++... ..++..|+-+...+.....+..|.+-|......- .
T Consensus 519 Yk~Ilkehp--~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 519 YKSILKEHP--GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHHCc--hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 999998654 233333344434444467888999988877 4677788888888888888888888777665532 3
Q ss_pred CCChhHHHHHHHHHHh------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 003273 560 APDGVTFLVLLYACSH------------SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP- 626 (834)
Q Consensus 560 ~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 626 (834)
.+|..+..+|.+.|.. .+..++|+++|.+..+ .-+-+...-+.+.-.++..|++.+|.++|.+..
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 3677777777775543 2456788888887764 334467777788889999999999999999883
Q ss_pred -CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 627 -MEPTPIIWVALLNGCRIHANVELGELAANRLLELE--SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 627 -~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...+..+|-.+...|...|++..|+++|+..++.. .+++.+...|+.++.+.|+|.+|.+........
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 22345689999999999999999999999988863 446788899999999999999999988777653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=8.9e-17 Score=187.65 Aligned_cols=406 Identities=9% Similarity=0.019 Sum_probs=256.1
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHH
Q 003273 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247 (834)
Q Consensus 168 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l 247 (834)
.++....-.+.+....|+.++|++++.+.....+.+...+..+...+...|++++|+.+|++..+. .|
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P--------- 80 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EP--------- 80 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---------
Confidence 344444555666667777777777777766533335555777777777777777777777776532 11
Q ss_pred HHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh
Q 003273 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327 (834)
Q Consensus 248 ~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 327 (834)
.+...+..++..+...|++++|...+++..+..+. +.. |..+...+..
T Consensus 81 ------------------------------~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~ 128 (765)
T PRK10049 81 ------------------------------QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKR 128 (765)
T ss_pred ------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHH
Confidence 23444556666777778888888888887776443 444 7777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCCh
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 407 (834)
.|+.++|+..++++.+ ..|.+..+...+...+.+.|..
T Consensus 129 ~g~~~~Al~~l~~al~------------------------------------------~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 129 AGRHWDELRAMTQALP------------------------------------------RAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred CCCHHHHHHHHHHHHH------------------------------------------hCCCCHHHHHHHHHHHHHCCCh
Confidence 8888888888877776 3344444555566666677777
Q ss_pred HHHHHHHHhcCCCCCCc------cchHHHHHHH-----HhcCCh---hHHHHHHHhhcccCCCCcCCcccHHHHHHHHhh
Q 003273 408 DVARVMFDAIAPKNRDV------ATWTVMIGSY-----SQNGGA---NDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473 (834)
Q Consensus 408 ~~A~~~f~~~~~~~~~~------~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~ 473 (834)
+.|...++.... .|+. .....++..+ ...+++ ++|++.++.+.+. ....|+...-
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~-~~~~p~~~~~--------- 235 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL-WHDNPDATAD--------- 235 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh-cccCCccchH---------
Confidence 777777776663 3321 0011111111 111223 5566666666541 0112221100
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hh-HHHHHHHHHHHcCChHHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---VV-SWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~ 549 (834)
........+..+...|++++|...|+.+.+.+ +. .-..+...|...|++++|+.
T Consensus 236 ----------------------~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 236 ----------------------YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred ----------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 00000111223345577788888887776321 11 11124556777888888888
Q ss_pred HHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhh
Q 003273 550 AFDQMRKEGLAPD-----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG----------ISAR---AEHYACIVDLLGR 611 (834)
Q Consensus 550 l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~l~~~~~~ 611 (834)
.|+++.+. .|. ......+..++...|++++|.++++.+.+... -.|+ ...+..+..++..
T Consensus 294 ~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 294 ILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 88887663 332 23355556677788888888888887764210 1122 2345567778888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 612 ANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.|++++|++.++++ ...| +...|..+...+...|+.+.|++.++++++++|++...+..++.++...|+|++|..+++
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999888886 2223 466888888888888999999999999999999888888888888899999999999888
Q ss_pred HHHhc
Q 003273 690 LMKHT 694 (834)
Q Consensus 690 ~m~~~ 694 (834)
.+.+.
T Consensus 452 ~ll~~ 456 (765)
T PRK10049 452 DVVAR 456 (765)
T ss_pred HHHHh
Confidence 88764
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.8e-15 Score=164.35 Aligned_cols=483 Identities=13% Similarity=0.082 Sum_probs=324.4
Q ss_pred hhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC-CCCCCCccchHhHHHHhhccCCchhhhhcCc
Q 003273 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQCGM 264 (834)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~ 264 (834)
++.|.+.|.......++|+...-.-.......|++..|+.+|+..... ....||...-.. ..+. ++|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~---------kl~~ 214 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFW---------KLGM 214 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHH---------hccc
Confidence 467777777777666656655444444445566777777777774421 133444322111 1112 5666
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHH------cCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 003273 265 MEEAKKVFERMKVKDVVSWNAMVTGYS------RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338 (834)
Q Consensus 265 ~~~A~~~~~~~~~~d~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 338 (834)
.+.|+..|.+..+.|+..-++++.... ....+..+..++...-..+.. |++..+.|..-|.-.|++..++.+.
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHH
Confidence 777777777666555544444333211 122345566666555554444 7777777778888888888888888
Q ss_pred HHHHHCCCC--CCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 339 RQMQFCGLE--PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 339 ~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
..+...-.. .-...|-.+-+++-..|+++.|...+-...+. .....+..+--|..+|.+.|+++.|...|+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 777764311 11234666777777888888888888777764 1111244455688999999999999999999
Q ss_pred cCCCCCC-ccchHHHHHHHHhcC----ChhHHHHHHHhhcccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHH----
Q 003273 417 IAPKNRD-VATWTVMIGSYSQNG----GANDALALFPQMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAY---- 486 (834)
Q Consensus 417 ~~~~~~~-~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~---- 486 (834)
+....|| ..+.-.+...|+..+ ..+.|..++.+..+ ..| |...|..+-..+.... .......+..
T Consensus 368 v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~----~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 368 VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE----QTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDI 442 (1018)
T ss_pred HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh----cccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 8766664 455566666666664 45667777776655 223 3445555544443332 2222333333
Q ss_pred HHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------CCh------hHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------RNV------VSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 487 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
+...+-. ..+.+.|.+...+...|++++|...|+.... +|. .+-..+...+-..++.+.|.+.|..
T Consensus 443 L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 443 LESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3345555 7889999999999999999999999987762 232 1223345566677899999999999
Q ss_pred HHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 003273 554 MRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM----PME 628 (834)
Q Consensus 554 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 628 (834)
... ..|+ ...|..++..-...+...+|...++.... ....++..++-+.+.+.+...+..|.+-|+.. ...
T Consensus 522 Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 522 ILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 999 5788 44566666445556888999999998875 45556667888888998888888888754443 344
Q ss_pred CCHHHHHHHHHHHHh------------cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 003273 629 PTPIIWVALLNGCRI------------HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 629 p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 696 (834)
+|..+.-+|.+.|.. .+..+.|++.|.+++..+|.|.-+-+.++-+++..|+|.+|..||.++++...
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 788888888887642 23467888999999999999988889999999999999999999999998754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.2e-16 Score=181.16 Aligned_cols=423 Identities=10% Similarity=-0.028 Sum_probs=232.9
Q ss_pred HHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChh
Q 003273 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221 (834)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 221 (834)
...+...|+++.|...+...++. .|+...|..+..+|.+.|++++|...++...+.++.+..+|..+..+|...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34444556666666666655543 3455556666666666666666666666665554445556666666666666666
Q ss_pred HHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHH
Q 003273 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301 (834)
Q Consensus 222 ~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 301 (834)
+|+..|.......+..+ .....++.... .......+...++.- ..+...+..+...+ .....+.+..
T Consensus 212 eA~~~~~~~~~~~~~~~--~~~~~~~~~~l---------~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 212 DALLDLTASCIIDGFRN--EQSAQAVERLL---------KKFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHHHHhCCCcc--HHHHHHHHHHH---------HHHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 66666654433211111 11111111100 000012222222221 12222233222222 2111222222
Q ss_pred HHHHhHhcCCCCCeeeHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHH
Q 003273 302 LFKKMRQENVKLNVVTWSAVIAGY---AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378 (834)
Q Consensus 302 l~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 378 (834)
-++.-.+.... ....+..+...+ ...+++++|++.|++..+.+.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------------- 325 (615)
T TIGR00990 279 GLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------------- 325 (615)
T ss_pred hhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC--------------------------------
Confidence 12211111000 111111111111 234678888888888776431
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 003273 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457 (834)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~ 457 (834)
..+.....++.+...|...|++++|...|++.....|+ ...|..+...+...|++++|+..|++.++ .
T Consensus 326 -------~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~ 394 (615)
T TIGR00990 326 -------LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK----L 394 (615)
T ss_pred -------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----h
Confidence 11223344555666677777777777777776655554 44667777777777788888888777765 3
Q ss_pred cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHH
Q 003273 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSL 534 (834)
Q Consensus 458 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~l 534 (834)
.| .++.++..+...|...|++++|...|++.. .| +...|..+
T Consensus 395 ~p-----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 395 NS-----------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CC-----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 33 334455566666667777777777776665 22 34556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------h-HHHHHH
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-------A-EHYACI 605 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~-~~~~~l 605 (834)
...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|+...+ +.|+ . ..++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHH
Confidence 6677777777777777777776 4554 56666777777777777777777777653 2222 0 112222
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
...+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33344467888888888775 33444 446777888888888888888888888887664
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=6.3e-17 Score=184.73 Aligned_cols=328 Identities=9% Similarity=-0.006 Sum_probs=211.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhc
Q 003273 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364 (834)
Q Consensus 285 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 364 (834)
.++..+.+.|++++|..+++......+. +...+..++.+....|++++|+..|+++...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-------------------- 105 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAV-------------------- 105 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------------------
Confidence 3455566777777777777777766555 4445555556666677777777777777652
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHH
Q 003273 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDA 443 (834)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 443 (834)
.|.+...+..+...|.+.|++++|...|++.....| +...|..+...+...|++++|
T Consensus 106 ----------------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 106 ----------------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred ----------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 233334444555555555555555555555544333 344455555555556666666
Q ss_pred HHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhc
Q 003273 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523 (834)
Q Consensus 444 ~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 523 (834)
...++++.. ..|+.......+..+...|++++|...+..+.+.... .+......+...+.+.|++++|...|+++
T Consensus 164 ~~~~~~~~~----~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 164 ISLARTQAQ----EVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHH----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 655555543 2333322222222344555555555555555443321 22233344566777888888888888877
Q ss_pred C---CCChhHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 524 K---QRNVVSWTSLMTGYGMHGLGDK----AHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 524 ~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
. ..+...+..+...+.+.|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+ .
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l 313 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---T 313 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---h
Confidence 6 2355677778888888888875 7888888887 5676 66777888888888888888888888764 3
Q ss_pred CCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 596 SAR-AEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWV-ALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 596 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.|+ ...+..+..+|.+.|++++|.+.++++. ..|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 443 5566778888888888888888888773 446544433 345567888899999999999988888753
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=2.3e-16 Score=180.09 Aligned_cols=330 Identities=9% Similarity=0.018 Sum_probs=193.9
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 003273 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184 (834)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g 184 (834)
.++..+.+.|++++|+.+++...... +-+...+..++.++...|+.+.|...++.+++.. +.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34556666777777777776666542 2223334444455556667777777777666653 344555666666666777
Q ss_pred ChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCc
Q 003273 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264 (834)
Q Consensus 185 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~ 264 (834)
++++|...|++.....+.+...|..+...+...|++++|...++.+... .|+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~------------------------- 176 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPP------------------------- 176 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC-------------------------
Confidence 7777777776666554445666666666666777777666666655432 111
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003273 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344 (834)
Q Consensus 265 ~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 344 (834)
+...+..+ ..+.+.|++++|...++.+......++...+..+...+.+.|++++|+..|++..+
T Consensus 177 --------------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~- 240 (656)
T PRK15174 177 --------------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA- 240 (656)
T ss_pred --------------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 11112112 22455666666666666665543332333344445556666666666666666654
Q ss_pred CCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHH----HHHHHHhcCCC
Q 003273 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV----ARVMFDAIAPK 420 (834)
Q Consensus 345 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~f~~~~~~ 420 (834)
..+.+..++..+...|.+.|++++ |...|++....
T Consensus 241 -----------------------------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 241 -----------------------------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 223344555666677777777764 66777766654
Q ss_pred CC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhH
Q 003273 421 NR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499 (834)
Q Consensus 421 ~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 499 (834)
.| +...+..+...+.+.|++++|+..+++.+. ..|+ ++.+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~----l~P~-----------------------------------~~~a 320 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA----THPD-----------------------------------LPYV 320 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCC-----------------------------------CHHH
Confidence 55 345666777777777777777777777665 3442 3334
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC--CCChhH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK--QRNVVS-WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
...+...|.+.|++++|...|+.+. .|+... +..+..++...|+.++|+..|++..+ ..|+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~ 384 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARAS 384 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChh
Confidence 4455666666777777777776665 343322 23344556667777777777777766 4444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=5.7e-16 Score=180.94 Aligned_cols=411 Identities=10% Similarity=0.022 Sum_probs=264.3
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhC
Q 003273 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217 (834)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~ 217 (834)
..-.++.....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.....+.+...+..++..+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444555566777777777777666532 344556777777777777777777777776666555666677777777777
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHH
Q 003273 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297 (834)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 297 (834)
|++++|+..+++..+. .| .+.. +..+...+...|+.+
T Consensus 97 g~~~eA~~~l~~~l~~---~P---------------------------------------~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 97 GQYDEALVKAKQLVSG---AP---------------------------------------DKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred CCHHHHHHHHHHHHHh---CC---------------------------------------CCHH-HHHHHHHHHHCCCHH
Confidence 7777777777777643 11 2333 555666667777777
Q ss_pred HHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHH
Q 003273 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377 (834)
Q Consensus 298 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 377 (834)
+|+..++++.+..+. +...+..+...+...|..++|++.++.... .|+.... +. .. .....+
T Consensus 134 ~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~---l~-------~~----~~~~~~ 195 (765)
T PRK10049 134 DELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRD---LE-------AD----AAAELV 195 (765)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHH---HH-------HH----HHHHHH
Confidence 777777777776544 555556666677777777777777765443 2331000 00 00 000000
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHHHhCCCh---HHHHHHHHhcCCC---CCCcc-ch----HHHHHHHHhcCChhHHHHH
Q 003273 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSV---DVARVMFDAIAPK---NRDVA-TW----TVMIGSYSQNGGANDALAL 446 (834)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~---~~~~~-~~----~~li~~~~~~g~~~~A~~l 446 (834)
+ ..+...+...+++ ++|...++.+... .|+.. .+ ...+..+...|++++|+..
T Consensus 196 r----------------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 196 R----------------LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred H----------------hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 0000111112223 5667666666532 23221 11 1113445677999999999
Q ss_pred HHhhcccCCCCc-CCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 003273 447 FPQMFQQDKLVK-PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525 (834)
Q Consensus 447 ~~~m~~~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 525 (834)
|+++.+ .+-. |+. ....+...|...|++++|+..|+++.+
T Consensus 260 ~~~ll~--~~~~~P~~-------------------------------------a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 260 YQRLKA--EGQIIPPW-------------------------------------AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhc--cCCCCCHH-------------------------------------HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 999887 3211 211 111245567777888888888777652
Q ss_pred --CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHHHhcCCHHHHHH
Q 003273 526 --RN-----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-----------LAPDG---VTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 526 --~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~ 584 (834)
|. ...+..+..++...|++++|+.+++++.... -.|+. ..+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 21 2345556667788888888888888887741 12331 234566678889999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 585 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
+++++.. ..+.+...+..+..++.+.|++++|++.+++. ...|+ ...+..+.......|+++.|+..++++++..|
T Consensus 381 ~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999875 33445778889999999999999999999987 34565 55777777788899999999999999999999
Q ss_pred CCCch
Q 003273 663 EKDGS 667 (834)
Q Consensus 663 ~~~~~ 667 (834)
+++.+
T Consensus 459 d~~~~ 463 (765)
T PRK10049 459 QDPGV 463 (765)
T ss_pred CCHHH
Confidence 98754
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.3e-13 Score=157.70 Aligned_cols=373 Identities=12% Similarity=0.060 Sum_probs=169.0
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhh
Q 003273 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368 (834)
Q Consensus 289 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 368 (834)
.|...|++++|+++|+++.+..+. |...+..++..+...++.++|++.++++... .|+...+..++..+...++...
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 344445555555555555544333 3344444444555555555555555554432 1332233222111212222222
Q ss_pred hhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHH
Q 003273 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448 (834)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 448 (834)
+.+.+..+++ ..|.+...+..++....+.|-...|.++..+-+ +..+=...... +.+.|.+..+
T Consensus 188 AL~~~ekll~-------~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p----~~f~~~~~~~l-----~~~~~a~~vr 251 (822)
T PRK14574 188 ALQASSEAVR-------LAPTSEEVLKNHLEILQRNRIVEPALRLAKENP----NLVSAEHYRQL-----ERDAAAEQVR 251 (822)
T ss_pred HHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc----cccCHHHHHHH-----HHHHHHHHHh
Confidence 4444444444 456778888888899999999988888877644 22221110000 0011111111
Q ss_pred hhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCccc-hhHHhHH---HHHHHhcCCHHHHHHHHhhc
Q 003273 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEMLI-PFVANCL---IDMYSRSGDIDTARVVFDNL 523 (834)
Q Consensus 449 ~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~l---i~~y~k~g~~~~A~~~~~~~ 523 (834)
... .|+..- -.+....+.+..-.+.+.. .+-.|+. +....+. +-++.+.|++.++.+.|+.+
T Consensus 252 ~a~------~~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 252 MAV------LPTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred hcc------cccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 110 000000 0000111222222222221 1110011 1111222 22344555555555555555
Q ss_pred CCC--Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 524 KQR--NV--VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL----AP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 524 ~~~--~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
..+ .+ ..-.++..+|...+++++|+.+|+++....- .| +......|..++...+++++|..+++.+.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 521 11 1233445555555566666666665544210 11 122234455555566666666666655543100
Q ss_pred ----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 595 ----------ISAR---AEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 595 ----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
-.|+ ...+..++..+...|++.+|++.++++. .+-|...+..+...++..|++..|+..++.+..
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 0111 1223334455555666666666665551 112455555555556666666666666666666
Q ss_pred cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 660 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++|++..+...++.++...|+|.+|..+.+...+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6666666666666666666666666555555443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.8e-13 Score=156.58 Aligned_cols=442 Identities=10% Similarity=-0.013 Sum_probs=260.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 003273 147 ELPSSRCGSSVHAVICSSGFDSNV--FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 224 (834)
+.|+...|...+.++++.. |+. .++ .++..+...|+.++|+..+++.....+........+...|...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666665543 221 233 56666666666666666666665321112222222244556666666666
Q ss_pred HHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 003273 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304 (834)
Q Consensus 225 ~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 304 (834)
++|+++.+. .|+ |...+..++..|.+.++.++|++.++
T Consensus 123 ely~kaL~~---dP~---------------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 123 ALWQSSLKK---DPT---------------------------------------NPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred HHHHHHHhh---CCC---------------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666666543 121 23334444555566666666666666
Q ss_pred HhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhc
Q 003273 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN-VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383 (834)
Q Consensus 305 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 383 (834)
++... .|+...+..++..+...++..+|++.++++.+.. |+ ...+..+..+..+.|-...|.++...--.
T Consensus 161 ~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~----- 231 (822)
T PRK14574 161 ELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPN----- 231 (822)
T ss_pred Hhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc-----
Confidence 66554 2233333222222323444444666666666543 33 33344455555555555555444322111
Q ss_pred CCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc-c
Q 003273 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA-F 462 (834)
Q Consensus 384 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-~ 462 (834)
-+.+..... + ..+.|.+..+.......+. -. +---.+.|+.-++.+... .+-.|.. .
T Consensus 232 --~f~~~~~~~---l-------~~~~~a~~vr~a~~~~~~~------~~---r~~~~d~ala~~~~l~~~-~~~~p~~~~ 289 (822)
T PRK14574 232 --LVSAEHYRQ---L-------ERDAAAEQVRMAVLPTRSE------TE---RFDIADKALADYQNLLTR-WGKDPEAQA 289 (822)
T ss_pred --ccCHHHHHH---H-------HHHHHHHHHhhcccccccc------hh---hHHHHHHHHHHHHHHHhh-ccCCCccch
Confidence 111111111 0 0111111111110000000 00 000124455555554431 1112322 1
Q ss_pred cH----HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---------Chh
Q 003273 463 TL----SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR---------NVV 529 (834)
Q Consensus 463 t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~ 529 (834)
-| .-.+-++...+...++...+..+...+.+ ....+--++.++|...+++++|..+|..+..+ +..
T Consensus 290 ~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 290 DYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 11 12344666677777777777777777765 66778889999999999999999999987521 233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-------------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEG-------------LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
....|.-+|...+++++|..+++++.+.- ..|| ...+..+...+...|++.+|.+.++.+.. .-
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~a 446 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TA 446 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 35678889999999999999999998731 1223 23345566678899999999999999974 34
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
+-|......+.+++...|++.+|++.++.. ...|+ ..+...+..+....+++..|+.+.+.+++..|+++.+
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 457888999999999999999999999876 24455 4566777777888899999999999999999998754
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=4.6e-11 Score=124.62 Aligned_cols=581 Identities=13% Similarity=0.118 Sum_probs=353.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhccc---CCCCcchhhHH------------HHHHHHHh
Q 003273 49 SLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWN------------ALIRRAVR 112 (834)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~~------------~li~~~~~ 112 (834)
++..++.++...+..++.+++ |-.-.+.=-..|++..|+.+..+- -+++. ..|- +++.-.++
T Consensus 266 DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSe--DvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSE--DVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchH--HHHHHHHhcCChHHHHHHHHHHHH
Confidence 677899999999988887776 543333334556666666655432 11111 2221 11111111
Q ss_pred C---------------CCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 003273 113 L---------------RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177 (834)
Q Consensus 113 ~---------------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 177 (834)
. .+...-.+++++.++. -|+.. .|=++.....+.+.|+-++..+++.- +.+...|.
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl--- 414 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLWL--- 414 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH---
Confidence 1 1111112233333322 23322 12233344555566777777766642 33444444
Q ss_pred HHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHh----hhCCCCCCCccchHhHHHHhhcc
Q 003273 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM----TGDVKVQGDGVSLVNALSACASL 253 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~p~~~t~~~~l~a~~~~ 253 (834)
+|++..-++.|..+++...+.=+.+...|-+-...--.+|+.+...++..+- ... |+..+...|..--.+|-.
T Consensus 415 -AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~- 491 (913)
T KOG0495|consen 415 -ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACED- 491 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhh-
Confidence 4555667788888888776654447778877777667788887777776654 334 666666666555555542
Q ss_pred CCchhhhhcCcHHHHHHHHHhcC-----C-CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh
Q 003273 254 GTWSRGKQCGMMEEAKKVFERMK-----V-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327 (834)
Q Consensus 254 ~~~~~~~~~g~~~~A~~~~~~~~-----~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 327 (834)
.|.+.....+..... + .--.+|+.-.+.|.+.+.++-|..+|....+--+. +...|...+..--.
T Consensus 492 --------agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 492 --------AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKS 562 (913)
T ss_pred --------cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 233333333322221 1 12346777777777777777777777777665433 55666666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCC
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVV-TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 406 (834)
.|..++-..+|++....- |-.. .+.....-.-..|++..++.++..+.. ..+.+..++-+-+..-.....
T Consensus 563 hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~-------~~pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFE-------ANPNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred cCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-------hCCCcHHHHHHHHHHhhcccc
Confidence 677777777777776532 2111 111112222333455555555544444 223344444444444445555
Q ss_pred hHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHH
Q 003273 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486 (834)
Q Consensus 407 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 486 (834)
++.|+.+|.+.....++...|.--+..---.++.++|++++++.
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~------------------------------------ 677 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEA------------------------------------ 677 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHH------------------------------------
Confidence 55555555444433344444443333333344444444444444
Q ss_pred HHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C
Q 003273 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-D 562 (834)
Q Consensus 487 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 562 (834)
++.- + .-...|-.+...|-+.++++.|...|..-.+ |+ +..|-.+...--+.|..-.|..++++.+-. .| |
T Consensus 678 -lk~f-p-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~ 752 (913)
T KOG0495|consen 678 -LKSF-P-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKN 752 (913)
T ss_pred -HHhC-C-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCc
Confidence 4332 1 4455667777778888888888888876652 43 456777777777788888888888888773 45 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 642 (834)
...|...+..-.+.|+.+.|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-+....+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 77788888888888888888888887776 455667778888888888888777777777765 45555556666677
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeC
Q 003273 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 708 (834)
...+++.|.+-|+++++.+|++-.++..+-..+...|.-++-.++++.-... .+.-|..|..+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 7888999999999999999999999999999999999988888888877654 344566776443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.4e-12 Score=129.08 Aligned_cols=447 Identities=11% Similarity=0.090 Sum_probs=265.1
Q ss_pred hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHH--HccCCCchHH-HHHHHHHHHhCCCCchhHHHHH
Q 003273 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA--CGELPSSRCG-SSVHAVICSSGFDSNVFVCNAL 176 (834)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 176 (834)
+.+=|.|+.. ..+|...++.-+|+.|...|+..+...-..|++. |-...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666654 4578889999999999999887777665555543 2233333322 23334444444 2333333
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCc
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~ 256 (834)
|.|.+.+ -+|+..++ ...+|.+||.|+|+--..+.|.+++++-... ..+.+..+|+.+|.+.+-
T Consensus 191 -----K~G~vAd--L~~E~~PK----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK----TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred -----ccccHHH--HHHhhcCC----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----
Confidence 3455444 44555444 6778999999999999999999999998877 667777777777776441
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhH---
Q 003273 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE--- 333 (834)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--- 333 (834)
.. -.++..+|....++||..|+|+++++..+.|+++.
T Consensus 255 ----------------------------------~~------~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~ 294 (625)
T KOG4422|consen 255 ----------------------------------SV------GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK 294 (625)
T ss_pred ----------------------------------hc------cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH
Confidence 11 14455666666666666666666666666665543
Q ss_pred -HHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhh-hHHHHHHHHHh--hhcCCCCCChhhHHHHHHHHHHhCCChHH
Q 003273 334 -ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG-KETHCYTIKRV--LSVDGSHPDDLMVINALIDMYAKCKSVDV 409 (834)
Q Consensus 334 -A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a-~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 409 (834)
|++++.+|++-|+.|...+|..+|.-+.+.++.... ..+...+.... ...++..+.|...+...++.+.+..+.+-
T Consensus 295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 445566666666666666666666666655554332 11222221110 11222345566777778888888889999
Q ss_pred HHHHHHhcCCCC------CC---ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHH
Q 003273 410 ARVMFDAIAPKN------RD---VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 410 A~~~f~~~~~~~------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 480 (834)
|.++-.-..... ++ ..-|..+....++....+.-+.+|+.|.- .-+-|+..+...+++|....+.++..
T Consensus 375 A~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP--~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP--SAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ceecCCchhHHHHHHHHhhcCcchhH
Confidence 988876654321 22 23356677788889999999999999987 77889999999999999999999999
Q ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH--cCChHHHHHHHHHHHHc
Q 003273 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGM--HGLGDKAHWAFDQMRKE 557 (834)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 557 (834)
..++..++..|.. ....+.. +.+.++-+-. .|+...-..+-...++ ..-.+.....-.+|.+.
T Consensus 453 pRiw~D~~~~ght-~r~~l~e-------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 453 PRIWKDSKEYGHT-FRSDLRE-------------EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHHHHHhhhh-hhHHHHH-------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999888877644 2222111 1122221111 2332222222222111 11111122222344443
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHH---HHHHhhcCCHHHHHHHHHhC
Q 003273 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI---VDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 558 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~ 625 (834)
.. .....+.++..+.+.|..++|.++|....++.+-.|.....++| ++.-.+......|...++-|
T Consensus 519 ~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 519 DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 33344455555677778888887777775544444444344433 33334445555555555444
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.1e-13 Score=134.91 Aligned_cols=246 Identities=15% Similarity=0.189 Sum_probs=188.6
Q ss_pred HHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhC
Q 003273 86 ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165 (834)
Q Consensus 86 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (834)
|.-+|+..|..+ .++..||.++++....+.|.+++++......+.+..+||.+|.+-. +..++.+..+|+...
T Consensus 196 AdL~~E~~PKT~---et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 ADLLFETLPKTD---ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HHHHHhhcCCCc---hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 334555555444 7899999999999999999999999988888999999999998764 334488999999999
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHH----HHHHhcCCCCC-CCcchHHHHHHHHHhCCChhH-HHHHHHHhhhC-C--CC
Q 003273 166 FDSNVFVCNALMAMYARCDTLSYAR----QLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEG-GLMLFARMTGD-V--KV 236 (834)
Q Consensus 166 ~~~~~~~~~~Li~~~~~~g~~~~A~----~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~-~--~~ 236 (834)
..||.+++|++++..++.|+++.|+ +++.+|++-|+ |...+|..+|..+++.++..+ |..++.++... . .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 9999999999999999999988765 56678889997 799999999999999998754 55555554321 0 23
Q ss_pred CC----CccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC--------C---ChhHHHHHHHHHHcCCCHHHHHH
Q 003273 237 QG----DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--------K---DVVSWNAMVTGYSRIGSFEDAFA 301 (834)
Q Consensus 237 ~p----~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~--------~---d~~~~~~li~~~~~~g~~~~A~~ 301 (834)
+| |..-|...+..|..+.+ .+-|.++..-... + ...-|..+....++....+.-..
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d---------~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRD---------LELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhh---------HHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45567888888985544 4444444332221 1 22346677777888888888899
Q ss_pred HHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003273 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347 (834)
Q Consensus 302 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 347 (834)
.|+.|.-+-+-|+..+...++++....|.++-.-+++.+|+..|..
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 9999888777788888888888888888888888888888876643
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=7.3e-12 Score=135.93 Aligned_cols=546 Identities=10% Similarity=0.055 Sum_probs=349.1
Q ss_pred CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 003273 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192 (834)
Q Consensus 113 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 192 (834)
.|+.++|..++.+.++.. +-....|..|-..+-..|+.+.+...+-.+.-.. +.|...|..+.....+.|++++|+-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 488888888888887753 4455678888888888888887766554443332 55667888888888888888888888
Q ss_pred HHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhH----HHHhhccCCchhhhhcCcHHHH
Q 003273 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA----LSACASLGTWSRGKQCGMMEEA 268 (834)
Q Consensus 193 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~----l~a~~~~~~~~~~~~~g~~~~A 268 (834)
|.+..+..|++...+---+..|-+.|+...|.+.|.++.+. ....|..-+... +..+. ..+.-+.|
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~-~p~~d~er~~d~i~~~~~~~~---------~~~~~e~a 299 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL-DPPVDIERIEDLIRRVAHYFI---------THNERERA 299 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHH---------HhhHHHHH
Confidence 88888887767665555677788888888888888888754 111111222222 22222 33344666
Q ss_pred HHHHHhcCC-----CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCC----------------------CeeeHHH-
Q 003273 269 KKVFERMKV-----KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL----------------------NVVTWSA- 320 (834)
Q Consensus 269 ~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------------------~~~~~~~- 320 (834)
.+.++.... -+...++.++..|.+...++.|......+..+...+ +..+|+.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 666665442 245678899999999999999999888877622222 2222222
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHH
Q 003273 321 ---VIAGYAQRGHGHEALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395 (834)
Q Consensus 321 ---li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (834)
++-++.+....+....+.....+.. +.-+...|.-+..++...|.+.+|..++..+... ....+..+|-
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~~~~~vw~ 453 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR------EGYQNAFVWY 453 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC------ccccchhhhH
Confidence 2233444444444444444455555 4445567888999999999999999999999876 4445678999
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccC------CCCcCCcccHHHHH
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQD------KLVKPNAFTLSCAL 468 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------~g~~p~~~t~~~ll 468 (834)
-+..+|...|.++.|.+.|+.+....|+ ...--+|-+.|.+.|++++|++.+..+..-+ .+..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998866663 4455667778899999999999999975311 22334444444444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCC---------------------CccchhHHhHHHHHHHhcCCHHHHHHHHhhc----
Q 003273 469 MACARLAALRFGRQIHAYVLRNQY---------------------EMLIPFVANCLIDMYSRSGDIDTARVVFDNL---- 523 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~---- 523 (834)
..+.+.|+.++-..+-..++.... .+........++.+-.+.++.....+-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 555566665554433333321100 0011222233444444444432222221111
Q ss_pred ----CCCChhHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Chh---HH-HHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 524 ----KQRNVVSW----TSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGV---TF-LVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 524 ----~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~---t~-~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
..-...-| .-++..+++.+++++|+.+...+.+.-+.- +.. .+ ...+.++...+++.+|..+++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11122233 345667889999999999999988754221 222 22 344557778899999999999998
Q ss_pred HhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 591 KEFGISAR---AEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNG--CRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 591 ~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..++...+ ...|++....+.+.|+-.-=..++... ...|+....-.++.+ ....+.+.-|...+-++....|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 76555433 345676666666666554444454444 222332122223333 345566778999999999999999
Q ss_pred CchHHHHHHHHH
Q 003273 665 DGSYTLLSNIYA 676 (834)
Q Consensus 665 ~~~~~~l~~~~~ 676 (834)
|.+-.+++-++.
T Consensus 774 Pl~nl~lglafi 785 (895)
T KOG2076|consen 774 PLINLCLGLAFI 785 (895)
T ss_pred cHHHHHHHHHHH
Confidence 887777766654
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=7.5e-11 Score=123.10 Aligned_cols=568 Identities=13% Similarity=0.093 Sum_probs=381.9
Q ss_pred HHHHHhcccCCCCCCc-hhHHHHHhcc--ChHHHHHHHHHHHHhcCCCCCchHHHHHHhhCCCc----hhHHHHhcccCC
Q 003273 23 FTNIKLFSVTTTPCIK-ITSLLLRQCK--SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAP----SPALSLLQRISP 95 (834)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~f~~~~~ 95 (834)
+++.+.+...|..--+ .----|.+|. ..+.++.+.+..++..+.+. ..+.+.-++ ..-.+++.+..+
T Consensus 301 l~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv------~lW~kA~dLE~~~~~K~RVlRKALe 374 (913)
T KOG0495|consen 301 LSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSV------RLWLKAADLESDTKNKKRVLRKALE 374 (913)
T ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCCh------hhhhhHHhhhhHHHHHHHHHHHHHH
Confidence 4455555666655333 2222344444 45667777777776654432 222222222 222333433322
Q ss_pred CCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHH
Q 003273 96 SPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174 (834)
Q Consensus 96 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (834)
..+ ++..|-+ .+.....+.|.-++.+..+. ++.+. -|..++++...++.|+.++....+. ++.+..+|.
T Consensus 375 ~iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWi 444 (913)
T KOG0495|consen 375 HIPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWI 444 (913)
T ss_pred hCCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHH
Confidence 222 2244543 34455566677777776653 22222 2444555666667777777776654 466667776
Q ss_pred HHHHHHHhCCChhHHHHHHHh----cCCCCCC-CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCC--ccchHhHH
Q 003273 175 ALMAMYARCDTLSYARQLFDE----MFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD--GVSLVNAL 247 (834)
Q Consensus 175 ~Li~~~~~~g~~~~A~~~~~~----m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~~l 247 (834)
+-...=-..|+.+...++.++ +...|+. +...|-.=...+-..|..--+..+.+....- |+... ..||...-
T Consensus 445 taa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da 523 (913)
T KOG0495|consen 445 TAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDA 523 (913)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhH
Confidence 666666677777777777654 2333432 5566766666676677766666666666544 44332 34666666
Q ss_pred HHhhccCCchhhhhcCcHHHHHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHH
Q 003273 248 SACASLGTWSRGKQCGMMEEAKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324 (834)
Q Consensus 248 ~a~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 324 (834)
..|. +.+.++-|+.+|.... ..+...|...+..--..|..++-..+|++....-++ ..+.|-....-
T Consensus 524 ~~~~---------k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 524 QSCE---------KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred HHHH---------hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 6666 5556666666665544 235667777777667778888888888888776443 55667666777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhC
Q 003273 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 404 (834)
+-..|+...|..++....+.... +...+...+..-.....++.++.++..+. ...++..+|.--+..---.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar--------~~sgTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR--------SISGTERVWMKSANLERYL 664 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh--------ccCCcchhhHHHhHHHHHh
Confidence 77788888888888887775432 45566666777777788888888888776 3467778888888888888
Q ss_pred CChHHHHHHHHhcCCCCCCc-cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHH
Q 003273 405 KSVDVARVMFDAIAPKNRDV-ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483 (834)
Q Consensus 405 g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 483 (834)
+..++|.+++++..+.-|+- -.|-.+.+.+-+.++.+.|.+.|..-.+ ..|
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k----~cP------------------------ 716 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK----KCP------------------------ 716 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc----cCC------------------------
Confidence 99999999999887655664 4566666777777777777777765544 344
Q ss_pred HHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003273 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560 (834)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 560 (834)
..+.++-.|...=-+.|.+-.|+.+|++.. ..|...|-..|..-.+.|+.+.|..+..+.++. .+
T Consensus 717 -----------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp 784 (913)
T KOG0495|consen 717 -----------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CP 784 (913)
T ss_pred -----------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 445566677777778888999999999876 347789999999999999999999999998884 33
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003273 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALL 638 (834)
Q Consensus 561 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 638 (834)
.+...|..-|...-+.++-......++ ..+-|+.+.-.+..++....+++.|.+.|.+. ...|| ..+|.-+.
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 346778777777777666444443332 34456677888888999999999999999987 44455 56898899
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
..+.+||.-+.-.+++.+...-+|..-..+...+
T Consensus 859 kfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 9999999999999999999999998665554443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=8e-11 Score=128.02 Aligned_cols=610 Identities=12% Similarity=0.024 Sum_probs=353.2
Q ss_pred cChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhccc---CCCCcchhhHHHHHHHHHhCCCchhHHHHH
Q 003273 48 KSLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123 (834)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 123 (834)
++++.|..+...+++..+.... |..|...|-..|+.+.+...+--. .+.+. .-|-.+-.-..+.|++.+|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHHHHH
Confidence 4888999999999988776666 899999999999999998876554 34444 78888888888999999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchh----HHHHHHHHHHhCCChhHHHHHHHhcCCC
Q 003273 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF----VCNALMAMYARCDTLSYARQLFDEMFQP 199 (834)
Q Consensus 124 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 199 (834)
.+.++.. +++....-.-...|-+.|+...|..-+.++.....+.|.. .--..++.|...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9988753 3343334445566778899999999998888764222222 2223455666777778888888877663
Q ss_pred --CCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHh-------HHHHhhccCCchhhhhcCcHHHHHH
Q 003273 200 --GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN-------ALSACASLGTWSRGKQCGMMEEAKK 270 (834)
Q Consensus 200 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-------~l~a~~~~~~~~~~~~~g~~~~A~~ 270 (834)
+..+...+|.++..|.+...++.|......+... ..++|...+.+ ....|.. |
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~----------~------- 371 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEV----------G------- 371 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccC----------C-------
Confidence 2336667889999999999999999998888763 33333332210 0000000 0
Q ss_pred HHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcC--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003273 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN--VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 271 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 348 (834)
.-...+..+ -.+.-++.+....+....+.....+.+ +.-++..|.-+..+|.+.|++.+|+.+|..+.....--
T Consensus 372 ---~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 372 ---KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ---CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 000112222 111112222222222222222233333 22233444455555555555555555555555443333
Q ss_pred CHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc----
Q 003273 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV---- 424 (834)
Q Consensus 349 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~---- 424 (834)
+...|-.+..++-..+..+.|.+.+..++. ..|.+..+-..|...|-+.|+.++|.+.+..+. .||.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e 518 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALETLEQII--NPDGRNAE 518 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCCccchh
Confidence 344455555555555555555555555554 345555666667777777777777777777765 3331
Q ss_pred -cch-------HHHHHHHHhcCChhHHHHHHHhhcccC--------------------CCCcCCcccHHHHHHHHhhhhh
Q 003273 425 -ATW-------TVMIGSYSQNGGANDALALFPQMFQQD--------------------KLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 425 -~~~-------~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
..| -.....|.+.|+.++-+..-..|+... .+..-...+...+..+-.+.++
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 598 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD 598 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence 111 223344566677666555444443200 0011111112222222222222
Q ss_pred H---HHHHHHH---HHHHHhCCCccch-hHHhHHHHHHHhcCCHHHHHHHHhhcCCC-----Chh----HHHHHHHHHHH
Q 003273 477 L---RFGRQIH---AYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLKQR-----NVV----SWTSLMTGYGM 540 (834)
Q Consensus 477 ~---~~a~~~~---~~~~~~~~~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~ 540 (834)
. +.+..-. ....-.++...+- ..+.-++...++.++.++|..+...+..- +.. .-..++.+...
T Consensus 599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~ 678 (895)
T KOG2076|consen 599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY 678 (895)
T ss_pred hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence 1 1111111 1111223221111 34566788999999999999999888732 221 33456677788
Q ss_pred cCChHHHHHHHHHHHHc-C--CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHH--HHHHHHHHhhcCC
Q 003273 541 HGLGDKAHWAFDQMRKE-G--LAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH--YACIVDLLGRANR 614 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~-g--~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~l~~~~~~~g~ 614 (834)
.+++..|...++.|+.. + ..|.. ..|+...+.....++-.-=.+++..+ ....|+-.+ +......+..++.
T Consensus 679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~---~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL---LVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCccCCcceeeeechhHhhccc
Confidence 99999999999999874 1 13443 33444555555554433222222222 122233212 2222334567888
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHH-H----------HhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCC
Q 003273 615 LDEAVELIEGM-PMEPTPIIWVALLNG-C----------RIHANVELGELAANRLLELESE--KDGSYTLLSNIYANAGR 680 (834)
Q Consensus 615 ~~~A~~~~~~~-~~~p~~~~~~~ll~~-~----------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 680 (834)
+..|+..+-+. ...||....+-+++. + .+|-.+-.|.....+..++.-. ...+.+.++.+|-..|-
T Consensus 756 ~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 756 FKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 88888766554 233554444433333 1 2333455677777777777533 56789999999999999
Q ss_pred chhHHHHHHHHHhc
Q 003273 681 WKDVARIRSLMKHT 694 (834)
Q Consensus 681 ~~~a~~~~~~m~~~ 694 (834)
..-|..++++..+.
T Consensus 836 ~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999765
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.9e-12 Score=126.57 Aligned_cols=488 Identities=14% Similarity=0.068 Sum_probs=278.5
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHH-HHHHHHccCCCchHHHHHHHHHHHhCCCCc----hhHHHHHHHHH
Q 003273 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP-FVLKACGELPSSRCGSSVHAVICSSGFDSN----VFVCNALMAMY 180 (834)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~~ 180 (834)
|.+.|..+..+.+|+..|+-..+...-|+.-.+- .+-+.+.+.+.+..|..++...+..-...+ ..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4556777778889999998887776666654332 234556677778888888887776421111 33455555667
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
.+.|.+++|+.-|+...+..+.=...+|.+| .+..-|+.++..+.|.+|... ...||..-|..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~i-p~~~dddkyi~--------------- 349 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDI-PGEIDDDKYIK--------------- 349 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcC-CCCCCcccccC---------------
Confidence 8889999999999987665442333455444 445568888888899998866 44444332210
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
.-..|+....|.-|. + +.++.|..++- .+.++++-.-.+
T Consensus 350 -------------~~ddp~~~ll~eai~----n-------d~lk~~ek~~k-----------------a~aek~i~ta~k 388 (840)
T KOG2003|consen 350 -------------EKDDPDDNLLNEAIK----N-------DHLKNMEKENK-----------------ADAEKAIITAAK 388 (840)
T ss_pred -------------CcCCcchHHHHHHHh----h-------HHHHHHHHhhh-----------------hhHHHHHHHHHH
Confidence 000122222222111 0 01111211100 001111111111
Q ss_pred HHHCCCCCCHhH-HHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 003273 341 MQFCGLEPNVVT-LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419 (834)
Q Consensus 341 m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 419 (834)
+..--+.||... +...+...-.....+.+.. .--.-..-|.+.|+++.|.++++-...
T Consensus 389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~d---------------------lei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 389 IIAPVIAPDFAAGCDWCLESLKASQHAELAID---------------------LEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HhccccccchhcccHHHHHHHHHhhhhhhhhh---------------------hhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 111111111100 0000000000000000000 000111223444555555444444432
Q ss_pred CCC---CccchHHHHHHHHhc-CChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcc
Q 003273 420 KNR---DVATWTVMIGSYSQN-GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495 (834)
Q Consensus 420 ~~~---~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 495 (834)
+.. +...-|.-.--|.+- .++..|.+.-+..+..+ .. +....+.--+.....|+++.|...+...+...-. .
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ry--n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c 523 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RY--NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-C 523 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-cc--CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-H
Confidence 110 001111111111221 22333433333332200 00 0000000001111234555555555555443221 1
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLY 571 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 571 (834)
...+| .+.-.+-+.|++++|++.|-++. ..+....-.+.+.|....+...|++++-+... +-|+ +....-|..
T Consensus 524 ~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHH
Confidence 22222 23345778899999999998765 56777777888899999999999999988776 5665 777888899
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCcHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNGC-RIHANVEL 649 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~ 649 (834)
.|-+.|+-.+|.+++-.--+ -++-+.++...|..-|....-+++|+.+|++. .+.|+..-|..++..| ++.|++..
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999998764432 45667888888999999999999999999998 4789999999999987 67899999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
|...|+..-...|+|....-.|..++...|.-
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999988864
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.1e-11 Score=118.74 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=159.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 570 (834)
--+.+...+.+-|+-.++.++|...|++..+ .....|+.|..-|....+...|++-+++.++ +.| |-..|..|.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLG 405 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLG 405 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhh
Confidence 3455667778888888999999999998874 3456899999999999999999999999998 777 688899999
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANV 647 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 647 (834)
.+|.-.+...-|+-+|++.. .++| |...|.+|.++|.+.++++||++.|.+.- ...+...+..|...+...++.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999886 4555 57899999999999999999999998873 223457888899999999999
Q ss_pred HHHHHHHHHHHh-------cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 648 ELGELAANRLLE-------LESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 648 ~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++|...+++.++ .+|+...+...|++-+.+.++|++|...-....
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999999999887 344444566678888999999999988766553
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.2e-09 Score=110.11 Aligned_cols=494 Identities=13% Similarity=0.111 Sum_probs=351.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
...|-...+.=...+++..|+.+|++....+..+...|--.+..=.++.....|..++++.... -...|..-|--+. .
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y-m 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY-M 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH-H
Confidence 3344444444445667777888888877665557777888888888888888888888887643 1112222221111 1
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcC--CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMK--VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 327 (834)
-- ..|++..|+++|++-. +||...|++.|+.=.+-+..+.|..++++..-. .|++.+|--...-=.+
T Consensus 151 EE---------~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 151 EE---------MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEK 219 (677)
T ss_pred HH---------HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHh
Confidence 00 4678888999998754 789999999999999999999999999998764 5899999888888889
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhh----hhchhhhhhHHHHHHHHHhhhcCCCCCCh--hhHHHHHHHHH
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDD--LMVINALIDMY 401 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~y 401 (834)
+|...-|..+|....+. -.|...-..++.+++ ....++.++-++..++.+ .|.+ ...+..+...=
T Consensus 220 ~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-------~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-------IPKGRAEELYKKYTAFE 290 (677)
T ss_pred cCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcccHHHHHHHHHHHH
Confidence 99999999999887653 123333344444544 456788899999999885 3333 55666666666
Q ss_pred HhCCChHHHHHH--------HHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc-------ccHH
Q 003273 402 AKCKSVDVARVM--------FDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA-------FTLS 465 (834)
Q Consensus 402 ~~~g~~~~A~~~--------f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-------~t~~ 465 (834)
-+.|+...-.++ ++.+...+| |-.+|--.+..--..|+.+...++|++.+. +++|-. ..|.
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa---nvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA---NVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc---cCCchhHHHHHHHHHHH
Confidence 666664433322 344443344 777888888888888999999999999985 466632 1232
Q ss_pred HHHHHH---hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHH----hcCCHHHHHHHHhhcC--CCChhHHHHHHH
Q 003273 466 CALMAC---ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS----RSGDIDTARVVFDNLK--QRNVVSWTSLMT 536 (834)
Q Consensus 466 ~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~ 536 (834)
-+=-+| ....+.+.+++++...++. ++ ....++.-+=-||+ ++.++..|.+++.... .|-.-++...|.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IP-HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IP-HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC-cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 222233 3457889999999998882 22 55556655555554 6789999999999877 577778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
.-.+.++++.+..++++.++ ..| |..+|......-...|+.+.|..+|+..+....++.....|-+.||.=...|.+
T Consensus 446 lElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 88899999999999999999 667 478888888878889999999999999887545555566788889999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHH-----hcC-----------cHHHHHHHHHHHHhc----CCCCC--chHHHHH
Q 003273 616 DEAVELIEGMP-MEPTPIIWVALLNGCR-----IHA-----------NVELGELAANRLLEL----ESEKD--GSYTLLS 672 (834)
Q Consensus 616 ~~A~~~~~~~~-~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~ 672 (834)
+.|..++++.. ..+...+|-++..--. ..+ +...|..+|+++... .|... ......-
T Consensus 524 ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~ 603 (677)
T KOG1915|consen 524 EKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWK 603 (677)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999883 3345558877765532 334 567788888887664 33211 2233444
Q ss_pred HHHHhcCCchhHHHHHHHHH
Q 003273 673 NIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 673 ~~~~~~g~~~~a~~~~~~m~ 692 (834)
++=...|.-.+...|-+.|-
T Consensus 604 ~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 604 NMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHhcCchhhHHHHHHhcc
Confidence 55566677777777777764
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.4e-11 Score=124.51 Aligned_cols=211 Identities=14% Similarity=0.170 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 551 (834)
|+.-.+.+-++.+++.... .+..|--+..+|....+.++-.+.|+... ..|+.+|..-...+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 5566666777777765543 33336667778899999999999999887 345667777677777788999999999
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003273 552 DQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP 629 (834)
Q Consensus 552 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 629 (834)
++.+. +.|+ ...|..+-.+..+.+.++++...|+..++ .++--++.|+-....+...++++.|.+.|+.. ..+|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 7886 77888888888999999999999999986 55666788999999999999999999999876 3333
Q ss_pred C---------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 630 T---------PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 630 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+ +.+-.+++-.- -.+|+..|+..++++++++|....+|..|+.+-...|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 33333443333 33899999999999999999999999999999999999999999998764
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=3.8e-10 Score=122.05 Aligned_cols=266 Identities=14% Similarity=0.073 Sum_probs=160.6
Q ss_pred HHHHhcCCCCC--chHHHHHHhhCCCchhHHHHhcccCCCCc--chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCC
Q 003273 59 QIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134 (834)
Q Consensus 59 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 134 (834)
.+-..|+.|+. +.+|+.-|+..|+.+.|- +|.-|.-++. +...++.++.+..+.++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 34445555555 666666666666666665 5655543322 2244566666665555555443 455
Q ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCC-C-CCCcchHHHHHH
Q 003273 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP-G-ICDIVSWNTIVA 212 (834)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~li~ 212 (834)
+.||..++.+|...||+.. |+...+ -.-.++..+...|.-..-..++-.+... + .||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 5566666666666666544 222111 1112222233333333333333332211 1 12332 2344
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC-CChhHHHHHHHHHH
Q 003273 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSWNAMVTGYS 291 (834)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~d~~~~~~li~~~~ 291 (834)
-..-.|.++.+++++..+.......|-.+ ++.-|.. ....+++-...-....+ ++..+|.+++..-.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~--------~ntpvekLl~~cksl~e~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--------DNTPVEKLLNMCKSLVEAPTSETLHAVLKRAL 215 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhcc--------CCchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 45556677777777766653211222111 2444432 12234444444444444 89999999999999
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
-.|+.+.|..++.+|.++|+..+.+-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+.--+-.+.+.|..
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999999999999888888776 788888999999999999999999999888777765543
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1e-13 Score=142.82 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFD 552 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 552 (834)
++.+.+.+.+..+...+. .++..+..++.. ...+++++|.+++.... .++...|..++..+.+.|+++++..+++
T Consensus 58 ~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccccccccccccccccc--cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444333322 344455666666 67889999998887764 4566778888888999999999999999
Q ss_pred HHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CC
Q 003273 553 QMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMP--ME 628 (834)
Q Consensus 553 ~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 628 (834)
+..... ..++...|..+...+.+.|+.++|.+.++...+ ..|+ ......++.++...|+.+++.++++... .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987643 234567788888889999999999999999874 4564 7788899999999999999888877662 13
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
.|+..|..+..++...|+.+.|...++++.+.+|+|+.....+++++...|+.++|.++++...
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667899999999999999999999999999999999999999999999999999999988764
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=1.5e-10 Score=125.13 Aligned_cols=539 Identities=12% Similarity=0.035 Sum_probs=296.7
Q ss_pred CCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHH
Q 003273 95 PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174 (834)
Q Consensus 95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (834)
.|+. ++|.++|..|+..|+.+.|- +|..|.-.+.+.+...|+.++.+....++.+.++ .|...+|+
T Consensus 22 ~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 22 LPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred CCch--hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 3455 77777777777777777766 7777776666666677777777766666665554 56667777
Q ss_pred HHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC
Q 003273 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254 (834)
Q Consensus 175 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~ 254 (834)
.|...|...|++.. |+...+. .-.++..+...|.......++..+....+.-||..+...++-
T Consensus 88 ~Ll~ayr~hGDli~----fe~veqd-------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv------ 150 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQD-------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV------ 150 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHHH-------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH------
Confidence 77777777777655 3332221 233444555566555566666555444455666555433322
Q ss_pred CchhhhhcCcHHHHHHHHHhcCCC--C-hhHHHHHHHHHHc-CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC
Q 003273 255 TWSRGKQCGMMEEAKKVFERMKVK--D-VVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330 (834)
Q Consensus 255 ~~~~~~~~g~~~~A~~~~~~~~~~--d-~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 330 (834)
-.|.++.+.+++..++.. + +... +++-... ...+++-........+ .|+..+|.+++..-.-+|+
T Consensus 151 ------~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 151 ------LEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred ------HHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 235567777777666631 1 1111 2333222 2234444444444433 5799999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHH
Q 003273 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410 (834)
Q Consensus 331 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 410 (834)
.+.|..++.+|.+.|+..+..-|..++-+ .++......+..-+... |..|+..++..-+-...+.|....+
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~------gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK------GVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh------cCCCCcchhHHHHHhhhcchhhhhc
Confidence 99999999999999999999988888877 56666667777777777 8888888887766666665543222
Q ss_pred HHHHHhcCCCCCCccchHHHHHHHHhcCChh-----HHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHH
Q 003273 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGAN-----DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485 (834)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 485 (834)
....+.-. +-+...+..+..+...+.+.+ -.+..+.+-.- .|+.-....| ++..-....|.-+...++-.
T Consensus 291 ~e~sq~~h--g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fL--lg~d~~~aiw-s~c~~l~hQgk~e~veqlvg 365 (1088)
T KOG4318|consen 291 EEGSQLAH--GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFL--LGTDILEAIW-SMCEKLRHQGKGEEVEQLVG 365 (1088)
T ss_pred ccccchhh--hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHH--hccccchHHH-HHHHHHHHcCCCchHHHHHh
Confidence 21111000 011112222222211111111 11112222111 1111111111 11111112344444445444
Q ss_pred HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHH--------
Q 003273 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH---GLGDKAHWAFDQM-------- 554 (834)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m-------- 554 (834)
.+..--.. ..+.-+++|. +.+...|.+...+..........+...+ ....+..++....
T Consensus 366 ~l~npt~r-----~s~~~V~a~~-----~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~ 435 (1088)
T KOG4318|consen 366 QLLNPTLR-----DSGQNVDAFG-----ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQ 435 (1088)
T ss_pred hhcCCccc-----cCcchHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHH
Confidence 44321111 1111111111 2334455555433322111111222211 1111111111111
Q ss_pred ----HH----cCCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 003273 555 ----RK----EGLAP-------DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619 (834)
Q Consensus 555 ----~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 619 (834)
.. .-..| -...-+.++..|.+.-+..+++..-+... .+-+ | ..|..|++.+.....+++|.
T Consensus 436 lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al 511 (1088)
T KOG4318|consen 436 LVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYAL 511 (1088)
T ss_pred HhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHH
Confidence 00 00111 01123345555555555555554443332 2122 2 56899999999999999999
Q ss_pred HHHHhCCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 620 ELIEGMPM-----EPTPIIWVALLNGCRIHANVELGELAANRLLEL---ESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 620 ~~~~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
.+.++... .-|..-+..+.....+++....+..+.+...+. .|.-..+..-+.+-.+..|+.+..++.++.+
T Consensus 512 ~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 512 SFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 99998842 134445677777788888888888887776653 3333455666777788899999999999999
Q ss_pred HhcCCccCCceeE
Q 003273 692 KHTGVKKRPGCSW 704 (834)
Q Consensus 692 ~~~~~~~~~~~s~ 704 (834)
...|+.. .|--|
T Consensus 592 vslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 592 VSLGLSE-TGPLW 603 (1088)
T ss_pred HHhhhhh-cccce
Confidence 9888765 34444
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=5.3e-11 Score=118.69 Aligned_cols=454 Identities=12% Similarity=0.055 Sum_probs=273.2
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC--CC------Chh
Q 003273 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--VK------DVV 281 (834)
Q Consensus 210 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~------d~~ 281 (834)
|..-|..+....+|+..|+-+.+. ..-|+.-.+-.-+. ++.. +...+.+|++.+.... .| -+.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnig------ni~~--kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIG------NIHF--KKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeec------ceee--ehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 445555666677777777777665 55555433221111 1111 3445566666654332 12 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH--------
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL-------- 353 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------- 353 (834)
..+.+.-.+.+.|++++|+.-|+...+. .||..+--.|+-++..-|+.++..+.|.+|..-...||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4556666788899999999999987776 467766666666777788999999999999875444444322
Q ss_pred HHHHHhhhhhchhhh--------hhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc
Q 003273 354 VSLLSGCASVGALLL--------GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425 (834)
Q Consensus 354 ~~ll~a~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 425 (834)
..++.--.+...+.. ++...-...+. ..+-..|+.... .+-..+.++.-.-...-..
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ki---iapvi~~~fa~g------------~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKI---IAPVIAPDFAAG------------CDWCLESLKASQHAELAID 420 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHH---hccccccchhcc------------cHHHHHHHHHhhhhhhhhh
Confidence 112211111111100 01100000000 000111111000 0111111111000000000
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH
Q 003273 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505 (834)
Q Consensus 426 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 505 (834)
.--.-...|.++|+++.|+++++-..+++.....-..+-.++|.-.-...++..|.++-+..+...- -++.....-.+
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn 498 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGN 498 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCc
Confidence 0011234578999999999999887663222222222223333333334466667766665543221 22322222233
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003273 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLM---TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 582 (834)
.-...|++++|.+.|++....|...-.+|. -.+...|+.++|++.|-++..- +..+......+.+.|....+..+|
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 344579999999999999977766544443 3567889999999999988762 334577788888899999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 583 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
++++-.... -++-|+...+.|.++|-+.|+-..|.+..-.. ..- -+..+..-|...|....-.|.++..++++--+
T Consensus 578 ie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 578 IELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 999877652 45557889999999999999999999875443 322 34445444666666667789999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 661 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+-+.--..++.++.+.|++..|..+++.+..+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9976655566777888999999999999888653
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.8e-10 Score=112.35 Aligned_cols=359 Identities=11% Similarity=0.062 Sum_probs=239.3
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChh-
Q 003273 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV- 281 (834)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~- 281 (834)
|..-+-.....+.+.|....|+..|...... .| ..|.+-+..+. -..+.+.+..+....+..+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~---~P--~~W~AWleL~~---------lit~~e~~~~l~~~l~~~~h~M 228 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR---YP--WFWSAWLELSE---------LITDIEILSILVVGLPSDMHWM 228 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc---CC--cchHHHHHHHH---------hhchHHHHHHHHhcCcccchHH
Confidence 5555555555667778888888888877632 22 22333332222 112333333333233222222
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHh
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL--EPNVVTLVSLLSG 359 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a 359 (834)
.=-.+..+|-...+.++++.-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..||+.++-.
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 12234456666678888888888888887764443334444555677899999999999998742 2366788887765
Q ss_pred hhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcC
Q 003273 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNG 438 (834)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g 438 (834)
-.....+ ..+.+-+-. -.+--+.++..+.+.|+-.++.++|...|++..+.+| ....|+.|..-|....
T Consensus 309 ~~~~skL----s~LA~~v~~------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 309 KNDKSKL----SYLAQNVSN------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HhhhHHH----HHHHHHHHH------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc
Confidence 3332221 111111111 2223345677888899999999999999999887776 5678999999999999
Q ss_pred ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHH
Q 003273 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518 (834)
Q Consensus 439 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (834)
+...|++-++..++ +.| .|-..|-.|..+|.-.+...-|+-
T Consensus 379 Nt~AAi~sYRrAvd----i~p-----------------------------------~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 379 NTHAAIESYRRAVD----INP-----------------------------------RDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred ccHHHHHHHHHHHh----cCc-----------------------------------hhHHHHhhhhHHHHHhcchHHHHH
Confidence 99999999999987 555 555666777888888888888888
Q ss_pred HHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--
Q 003273 519 VFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-- 593 (834)
Q Consensus 519 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-- 593 (834)
.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|.++|++-.+..
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 888776 3477888888888888888888888888888754 3356778888888888888888888888766532
Q ss_pred -C-CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 594 -G-ISA-RAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 594 -~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
| +.| ......-|..-+.+.+++++|.......
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 2 223 2233333556667777877777655443
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=8.4e-12 Score=131.47 Aligned_cols=275 Identities=16% Similarity=0.077 Sum_probs=215.3
Q ss_pred ChHHHHHHHHhcCCCCCCcc-chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC----CcccHHHHHHHHhhhhhHHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP----NAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p----~~~t~~~ll~a~~~~~~~~~a 480 (834)
+..+|...|..++...+|+. ....+..+|...+++++|.++|+...+ ..| +...|+++|--.-+. .+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~----~~p~rv~~meiyST~LWHLq~~----v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRR----IEPYRVKGMEIYSTTLWHLQDE----VA 405 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccccchhHHHHHHHHHHhh----HH
Confidence 46788889988776556654 234567889999999999999999977 444 334565555332211 11
Q ss_pred HHHHH-HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 481 RQIHA-YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR---NVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 481 ~~~~~-~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
...+. .+++. .+..|..|.++.++|.-.++.+.|.+.|++..+- ...+|+-+..-+.....+|.|...|+..+.
T Consensus 406 Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 11111 12221 2278999999999999999999999999999843 456888888888899999999999999887
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHH
Q 003273 557 EGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPI 632 (834)
Q Consensus 557 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~ 632 (834)
+.|. -..|..+...|.+.++++.|.-.|+.+. .+.|. .....+++..+.+.|+.|+|+++++++ ..+ .|+.
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 6775 5678888999999999999999999886 67775 566778889999999999999999998 222 3444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.----...+...++.++|...+|++.++-|+++.+|.+++.+|-+.|+.+.|..-|..+.+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444455566777889999999999999999999999999999999999999999998887643
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-09 Score=112.59 Aligned_cols=473 Identities=11% Similarity=0.026 Sum_probs=282.5
Q ss_pred HHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHh--cCCCCCCCcchHHHHHHHHHhCC
Q 003273 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE--MFQPGICDIVSWNTIVAAYAQSG 218 (834)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~~li~~~~~~g 218 (834)
+++-+........|.-+-+.+...+.+|+. ---+.++|.-.|+++.|..+... +..+ |..+.......+.+..
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le~~---d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLEKR---DIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHH
Confidence 333333344455555555555555434433 33466777777788877776653 4555 8888888888888888
Q ss_pred ChhHHHHHHHHhhhC-CCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCC--hhHHHHHHHHHHcCCC
Q 003273 219 DAEGGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGS 295 (834)
Q Consensus 219 ~~~~A~~~~~~m~~~-~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d--~~~~~~li~~~~~~g~ 295 (834)
++++|+.++.+-... .++.-+..+- ++.. .. +.+. .+...+ ...+-.-...|....+
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~-----~~~l--~~---------n~~~----~~~~~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDA-----ANTL--EL---------NSAG----EDLMINLESSICYLRGKVYVALDN 156 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhh-----hcee--cc---------Cccc----ccccccchhceeeeeeehhhhhcc
Confidence 999998888733111 0111111110 0000 00 0000 000000 0011111123444455
Q ss_pred HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc-CChhHHHHHHHHHHHC-CCCCCHhHHHHHHHhhh-hhchhhhhhHH
Q 003273 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR-GHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCA-SVGALLLGKET 372 (834)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~-~~~~~~~a~~~ 372 (834)
.++|...|.+.... |+..+.++...-... =...+-.++|...--. -..-+......+..... +..+.+.....
T Consensus 157 ~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 157 REEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 66666666666554 443333332211110 0011122222211000 00111112222211110 00000000000
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhc
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMF 451 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 451 (834)
-+.- -. +...+..+.....+-+...+++.+..++++.+.+..| ....+-.-|.++...|+..+-..+=.++.
T Consensus 233 ~~~s-l~------~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 233 EDES-LI------GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred chhh-hh------hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 0000 00 3344555666666677777777777777777664443 44445555666777777766666666665
Q ss_pred ccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---h
Q 003273 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---V 528 (834)
Q Consensus 452 ~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~ 528 (834)
+ ..| ..+..|-++.--|.-.|+..+|++.|.+...-| .
T Consensus 306 ~----~yP-----------------------------------~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 306 D----LYP-----------------------------------SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred H----hCC-----------------------------------CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 5 233 445556677777778899999999998877333 4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIV 606 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 606 (834)
..|-.....|+-.|..+.|+..+...-+ .-|. ...+..+.--|...++.+.|.++|.... ++-| |+..++-+.
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elg 421 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELG 421 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhh
Confidence 5899999999999999999999998877 4443 4445556667888999999999998875 6666 456677777
Q ss_pred HHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 607 DLLGRANRLDEAVELIEGMP--------MEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
-+....+.+.+|..+|+... .++ =..+|+.|..+|++.+..++|+..+++++.+.|+++.+|..++-+|..
T Consensus 422 vvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 422 VVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred heeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 77778889999999887652 111 234688899999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHh
Q 003273 678 AGRWKDVARIRSLMKH 693 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~ 693 (834)
.|+++.|.+.+.+...
T Consensus 502 lgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALA 517 (611)
T ss_pred hcChHHHHHHHHHHHh
Confidence 9999999999988754
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=1.2e-10 Score=125.51 Aligned_cols=280 Identities=11% Similarity=0.049 Sum_probs=189.2
Q ss_pred CCCchhHHHHHHHHHHcCCCCCccc-HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhCCChhHH
Q 003273 113 LRLPDNAFRLFLQMMRRGWHPDEYT-FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC--NALMAMYARCDTLSYA 189 (834)
Q Consensus 113 ~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~~~~~g~~~~A 189 (834)
.|++++|.+......+.+ +++.. |.....+..+.|+.+.+...+..+.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998877655432 22222 333334447889999999999999875 4554333 2446788999999999
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc-c------chHhHHHHhhccCCchhhhhc
Q 003273 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-V------SLVNALSACASLGTWSRGKQC 262 (834)
Q Consensus 190 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~------t~~~~l~a~~~~~~~~~~~~~ 262 (834)
...++++.+..|.+......+...|.+.|++++|++++..+.+. ...++. . ++..++.... ..
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~---------~~ 242 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAM---------AD 242 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH---------Hh
Confidence 99999999888778889999999999999999999999999976 333211 1 1111111111 11
Q ss_pred CcHHHHHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 003273 263 GMMEEAKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339 (834)
Q Consensus 263 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 339 (834)
...+...++++..+ ..++.....+...+...|+.++|..++++..+.. ||. --.++.+....++++++++..+
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~--~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE--RLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH--HHHHHHhhccCCChHHHHHHHH
Confidence 22333444444443 1245555556666666666666666665555431 111 1112233334455555555555
Q ss_pred HHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 003273 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419 (834)
Q Consensus 340 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 419 (834)
...+ ..|.|.....++...+.+.+++++|++.|+....
T Consensus 319 ~~lk------------------------------------------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 319 QQIK------------------------------------------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHh------------------------------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5544 5677777888889999999999999999999887
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 420 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
..|+...+-.+...+.+.|+.++|.+.+++-..
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888888899999999999999999887653
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.4e-11 Score=126.95 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=195.8
Q ss_pred CChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CccchhHHhHHHHHHHhcCCHHH-
Q 003273 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY-EMLIPFVANCLIDMYSRSGDIDT- 515 (834)
Q Consensus 438 g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~- 515 (834)
-+..+|+.+|..... .+.-+......+-.+|...+++++++.+|+.+.+... ...+..+|.+.+-.+-+.=.+.-
T Consensus 333 y~~~~A~~~~~klp~---h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS---HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHhhHH---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 456899999999443 2333345566677899999999999999999987532 22466777777665543222222
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 516 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
|..+.+ +.+..+.+|-++.+.|.-+++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|...|+...
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 222222 2245678999999999999999999999999999 8895 8889888888889999999999998765
Q ss_pred CCCChHHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 595 ISARAEHYAC---IVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 595 ~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
..++.||++ ++-.|.|.++++.|+-.|+++ .+.|. .++...+...+.+.|+.++|...+++++-++|.|+-.-.
T Consensus 483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 345566665 566799999999999999988 55564 566677777789999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 670 LLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..+.++...+++++|...+++.++.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=1.5e-10 Score=124.86 Aligned_cols=226 Identities=14% Similarity=0.041 Sum_probs=133.3
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 398 IDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 398 i~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
...+...|+++.|...++++.+..| +......+...|.+.|++++|++++..+.+ .+..++. .+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~~-~~~~l--------- 227 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDEE-HRAML--------- 227 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCHH-HHHHH---------
Confidence 5677778888888888888776666 456677777888888888888888888876 3332211 01000
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
....+..++....+..+.+...++++..+ ..++..+..+...+...|+.++|..++++
T Consensus 228 -------------------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 228 -------------------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred -------------------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00011122222222333444455555544 23555666666666667777777777766
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003273 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPI 632 (834)
Q Consensus 554 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 632 (834)
..+ ..||... .++.+....++.+++.+..+...++ .+-|...+.++..++.+.|++++|.+.|+.. ...|+..
T Consensus 289 ~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 289 GLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 665 3344321 1222333446666666666666542 2334455666667777777777777777665 3456666
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
.+..|...+...|+.++|...+++.+.+
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666677777777777777766654
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.3e-08 Score=102.88 Aligned_cols=431 Identities=12% Similarity=0.128 Sum_probs=303.5
Q ss_pred CCCchhHHHHhcccCCCCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcc-cHHHHHHHHccCCCchHHHHH
Q 003273 80 HNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY-TFPFVLKACGELPSSRCGSSV 157 (834)
Q Consensus 80 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 157 (834)
.+++..|+.+|++...-+. +...|---+..-.++.....|..++++.... -|-.. .+---+-.=-..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5677889999998643322 2377888888888999999999999988763 33322 233333334467899999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 003273 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237 (834)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 237 (834)
|+.-.+ ..|+...|++.|++=.+...++.|+.++++..--. |++.+|--...-=-+.|....|..+|.......|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-- 238 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-- 238 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--
Confidence 998876 47999999999999999999999999999876544 5899999888888999999999999998875422
Q ss_pred CCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----C-CChhHHHHHHHHHHcCCCHHHHHHH--------HH
Q 003273 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----V-KDVVSWNAMVTGYSRIGSFEDAFAL--------FK 304 (834)
Q Consensus 238 p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~-~d~~~~~~li~~~~~~g~~~~A~~l--------~~ 304 (834)
|...-..++.+++.... .+..++.|..+|+-.. . +....|..+...=-+.|+.....+. ++
T Consensus 239 -~d~~~e~lfvaFA~fEe-----~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 239 -DDEEAEILFVAFAEFEE-----RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred -hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 33334444445442111 5667888888775443 2 2245566666555555654433332 44
Q ss_pred HhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------hHHHHHHHhhh---hhchhhhhhHHHH
Q 003273 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV-------VTLVSLLSGCA---SVGALLLGKETHC 374 (834)
Q Consensus 305 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~---~~~~~~~a~~~~~ 374 (834)
.+...++. |-.+|--.+..--..|+.+...++|++.... ++|-. +.|.-+=-+|. ...+.+..++++.
T Consensus 313 ~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55566555 7778888888888899999999999998864 33422 23333333332 4568888899998
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHHH----hCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhh
Q 003273 375 YTIKRVLSVDGSHPDDLMVINALIDMYA----KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450 (834)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 450 (834)
..++ -.|...+++.-+--+|+ ++.++..|++++.......|-.-++-.-|..=.+.++++....+|++.
T Consensus 391 ~~l~-------lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 391 ACLD-------LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHh-------hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8887 45666677766655554 578899999999888866677777777777778888999999999988
Q ss_pred cccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC
Q 003273 451 FQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN 527 (834)
Q Consensus 451 ~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~ 527 (834)
++ ..| |..++.....-=..+|+.+.++.++..++....-.....++.+.|+.=..+|.++.|..+++++.+ +.
T Consensus 464 le----~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 464 LE----FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred Hh----cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 87 555 445555555555567788888888887776543214445666777777777778888877777763 33
Q ss_pred hhHHHHHHH
Q 003273 528 VVSWTSLMT 536 (834)
Q Consensus 528 ~~~~~~li~ 536 (834)
+.+|-++..
T Consensus 540 ~kvWisFA~ 548 (677)
T KOG1915|consen 540 VKVWISFAK 548 (677)
T ss_pred chHHHhHHH
Confidence 445655443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=4.5e-10 Score=121.88 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=90.7
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
...|+++.|++.+.+..+..+.....+-....++.+.|+++.|.+.+.+..+. .|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~--------------------- 150 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGN--------------------- 150 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCc---------------------
Confidence 35788888888887766553323444455566677778888888888776543 111
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
++..+.-.....+...|+++.|...++.+.+.++. +...+..+...+.+.|++++|.+++..
T Consensus 151 -----------------~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 151 -----------------DNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred -----------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11122333466777889999999999999988766 677888899999999999999999999
Q ss_pred HHHCCCC
Q 003273 341 MQFCGLE 347 (834)
Q Consensus 341 m~~~g~~ 347 (834)
+.+.++.
T Consensus 213 l~k~~~~ 219 (409)
T TIGR00540 213 MAKAGLF 219 (409)
T ss_pred HHHcCCC
Confidence 9988754
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=6.8e-10 Score=120.52 Aligned_cols=231 Identities=11% Similarity=-0.017 Sum_probs=118.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
.......+...|+++.|...++.+.+..| +...+..+...|.+.|++++|.+++....+ .++.+.. .+..+-
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k--~~~~~~~-~~~~l~---- 228 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK--AGLFDDE-EFADLE---- 228 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCHH-HHHHHH----
Confidence 33446677778888888888888876666 455677778888888888888888888876 4322211 110000
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 549 (834)
...+..+++.-......+.....++..++ .+...+..+...+...|+.++|.+
T Consensus 229 ------------------------~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 229 ------------------------QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred ------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 00011111111111223333344444432 366777777777888888888888
Q ss_pred HHHHHHHcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh--
Q 003273 550 AFDQMRKEGLAPDGVTF---LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG-- 624 (834)
Q Consensus 550 l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 624 (834)
++++..+ ..||.... ..........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+.
T Consensus 285 ~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 8888777 34554321 1111112223455555555555443222222113333444444445555555554442
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 625 M-PMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 625 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
. ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 22344444444444444444444444444443
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=3.2e-12 Score=131.68 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcC-CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQEN-VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
...+.+.|++++|++++++..... ..-|...|..+.......+++++|++.++++.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~ 71 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL 71 (280)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344445555555555553332221 11133333333333444444444444444444
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=9.4e-07 Score=93.12 Aligned_cols=529 Identities=13% Similarity=0.128 Sum_probs=268.2
Q ss_pred chhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHc-CCCCCcccHHHHHHHHccCCCchHHHHHHHHH
Q 003273 83 PSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (834)
++.+..+..+|| ..|-.-+..+..+|+...-...|.+.+.. -+.-....|...++-....+-++.+..++++-
T Consensus 91 ~er~lv~mHkmp------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 91 FERCLVFMHKMP------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHhcCC------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 344555555565 67877788888888888888888776553 23334456777777777777788888888887
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCC
Q 003273 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG-------ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234 (834)
Q Consensus 162 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 234 (834)
++. ++..-+-.|..+++.+++++|.+.+....... ..+-..|+.+-...+++-+.-..+.
T Consensus 165 Lk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln--------- 231 (835)
T KOG2047|consen 165 LKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN--------- 231 (835)
T ss_pred Hhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC---------
Confidence 763 33446777888888999999988888876542 1233445544444443332111111
Q ss_pred CCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC--CC--hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcC
Q 003273 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--KD--VVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310 (834)
Q Consensus 235 ~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 310 (834)
+.. ++..+.. +| -..|++|.+.|.+.|.++.|.++|++....
T Consensus 232 --------vda-------------------------iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 232 --------VDA-------------------------IIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred --------HHH-------------------------HHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 111 1111111 22 357999999999999999999999887654
Q ss_pred CCCCeeeHHHHHHHHHhcCCh----------------------hHHHHHHHHHHHCCC-C---------C-CHhHHHHHH
Q 003273 311 VKLNVVTWSAVIAGYAQRGHG----------------------HEALDVFRQMQFCGL-E---------P-NVVTLVSLL 357 (834)
Q Consensus 311 ~~p~~~~~~~li~~~~~~g~~----------------------~~A~~l~~~m~~~g~-~---------p-d~~t~~~ll 357 (834)
..++.-|..+-++|++-... +-.+.-|+.+...+. - | +..++..-.
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV 356 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV 356 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh
Confidence 11444455555555432211 112222332222110 0 0 011111111
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-CCc----cchHHHHH
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-RDV----ATWTVMIG 432 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~----~~~~~li~ 432 (834)
. ...|+..+....+..+++..-. ......-...|..+.+.|-..|+++.|+.+|++....+ +.+ ..|-.-..
T Consensus 357 ~--l~e~~~~~~i~tyteAv~~vdP-~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 357 K--LYEGNAAEQINTYTEAVKTVDP-KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred h--hhcCChHHHHHHHHHHHHccCc-ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 0 1123344445556666664211 00111223467888999999999999999999877332 221 23444444
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCC
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 512 (834)
.=.+..+++.|+++.+.... .|.... + .+...+..-++ .+| .+..++...++.--.+|-
T Consensus 434 mElrh~~~~~Al~lm~~A~~-----vP~~~~----~-~~yd~~~pvQ~-rlh----------rSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATH-----VPTNPE----L-EYYDNSEPVQA-RLH----------RSLKIWSMYADLEESLGT 492 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhc-----CCCchh----h-hhhcCCCcHHH-HHH----------HhHHHHHHHHHHHHHhcc
Confidence 45567788888888887754 222111 0 00000000000 001 233344444555555555
Q ss_pred HHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH---hcCCHHHHHHH
Q 003273 513 IDTARVVFDNLKQRNVVSWTSLM---TGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS---HSGMVDQGLKY 585 (834)
Q Consensus 513 ~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~---~~g~~~~a~~~ 585 (834)
++....+++++.+--+.|=..++ .-+-.+.-++++.+.|++-+..=-.|+ ...|+..|.-+. ..-.++.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 56666666655421111111111 112234445555555555444322233 223333333322 12345666666
Q ss_pred HHHhHHhcCCCCChH--HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 586 FDSMSKEFGISARAE--HYACIVDLLGRANRLDEAVELIEGMP--MEPT--PIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|++..+ +.+|... .|-....+=.+-|....|++++++.. .++. ...|+..|.--...=-+.....+|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 666553 4444321 12222222223455556666666552 1121 22455554432222113344556666666
Q ss_pred cCCCCCc--hHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 660 LESEKDG--SYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 660 ~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
.-|++.. ...-.+++=.+.|..+.|+.++..-
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 6554322 2233455555666666666666544
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=7.4e-08 Score=103.66 Aligned_cols=136 Identities=19% Similarity=0.136 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCR 642 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 642 (834)
|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|... ...|+ +.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444556677777777776666664 3333 3456666677888888888888888766 45565 557788888888
Q ss_pred hcCcHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEE
Q 003273 643 IHANVELGEL--AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705 (834)
Q Consensus 643 ~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 705 (834)
..|+...|.. +...+++++|.++.+|..|+.++.+.|+.++|.+-|....+.. ...|--+|.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~PV~pFs 793 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNPVLPFS 793 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCCccccc
Confidence 8898888888 8999999999999999999999999999999999998887643 234544453
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.1e-08 Score=104.06 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=139.3
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccc-hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVAT-WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~ 477 (834)
..+.-+|+.-.|..-|+......|.... |--+...|....+.++....|....+ +.|
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~----ldp------------------ 391 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED----LDP------------------ 391 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh----cCC------------------
Confidence 3455567777777777777755554443 66677778888888888888877755 555
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003273 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--R-NVVSWTSLMTGYGMHGLGDKAHWAFDQM 554 (834)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 554 (834)
.++.+|..-..++.-.+++++|..=|++... | ++..|-.+..+.-+.+++++++..|++.
T Consensus 392 -----------------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 392 -----------------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred -----------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666777777777776663 2 3445555555555666777777777777
Q ss_pred HHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 555 RKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR---------AEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 555 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
++. -|+ +..|+.....+...+++++|.+.|+..+ .+.|+ +-+--+++-+- -.+++..|.+++++
T Consensus 455 kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 455 KKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRK 528 (606)
T ss_pred HHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHH
Confidence 763 454 6667777777777777777777777665 23333 11111122111 23677777777777
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 625 M-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 625 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
. ...|- ...+-+|...-.+.|+.++|++.|++...+
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6 34443 446777777777778888888887776665
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=5.1e-08 Score=94.99 Aligned_cols=417 Identities=11% Similarity=0.078 Sum_probs=216.1
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCc
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~ 256 (834)
...|.+.|++++|..++..+.+..-++...|-.|...+.-.|.+.+|..+-....+. ..-.-++-..+.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-------pL~~RLlfhlah---- 132 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-------PLCIRLLFHLAH---- 132 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHH----
Confidence 344555666666666666655554445555555555555556666665554433221 111122221111
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHH-HHHHhcCChhHHH
Q 003273 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI-AGYAQRGHGHEAL 335 (834)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~ 335 (834)
+.++-++-..+.+.+. ....---+|.++....-.+++|++++.+....+ |+-...|.-+ -+|.+..-++-+.
T Consensus 133 ----klndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 133 ----KLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred ----HhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHH
Confidence 3333333333222222 112223344444444456788888888877652 3344444433 4566777777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHhhhhhc--hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhC-----CChH
Q 003273 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVG--ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC-----KSVD 408 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-----g~~~ 408 (834)
++++--++. .||. |+..=+.+|..-. .-..+.+-...+... +... -..+.-.++. ..-+
T Consensus 206 evl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN------~~~~-----~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 206 EVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADN------IDQE-----YPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhc------cccc-----chhHHHHHHcCeEEEeCCc
Confidence 777666543 2443 3333333333211 111111111111111 1100 0112222222 2335
Q ss_pred HHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488 (834)
Q Consensus 409 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 488 (834)
.|.+++-.+. ..=+..--.++--|.+.++..+|..+.++.. ...|-......+..+.
T Consensus 272 gALqVLP~L~--~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aa----------------- 328 (557)
T KOG3785|consen 272 GALQVLPSLM--KHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAA----------------- 328 (557)
T ss_pred cHHHhchHHH--hhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHH-----------------
Confidence 5666554443 1112223345556888899999988877662 2444333322222211
Q ss_pred HhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 003273 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563 (834)
Q Consensus 489 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 563 (834)
+..-......+.-|...|+-.- + .++.--.+|.+.+.-..++++.+..++....- +..|.
T Consensus 329 --------------lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD 393 (557)
T KOG3785|consen 329 --------------LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDD 393 (557)
T ss_pred --------------hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 1111111122333444443322 1 12223444555555566677777777777664 23333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CChHHH-HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS-ARAEHY-ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN-G 640 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~-~ 640 (834)
.--..+..|.+..|.+.+|.++|-.+. +.+ .+..+| ..|..+|.+.|..+-|++++-++....+..+.-.++. -
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIAND 470 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 333456778888899999999887664 322 233444 4456788999999999999988865555555555554 4
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 641 CRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
|.+.+.+=-|-+++..+-.++|. +..
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~-pEn 496 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPT-PEN 496 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCC-ccc
Confidence 99999888888999999888884 443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=1.2e-09 Score=109.35 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=164.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.....+..+...|.+.|++++|...|++.. . .+...|..+...+...|++++|.+.+++..+. .|+ ...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 345667788899999999999999999876 2 34668888889999999999999999999984 454 66778888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 648 (834)
..+...|++++|.++++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8999999999999999998753222334567788899999999999999999887 2233 4567888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888889999999999999999999887754
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=5.4e-09 Score=100.81 Aligned_cols=301 Identities=17% Similarity=0.182 Sum_probs=171.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChH
Q 003273 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408 (834)
Q Consensus 329 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 408 (834)
.++++|.++|-+|.+... -+..+-.++-+-|-+.|..+.|..+|....++- +-....-..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555555544110 011122233334444455555555555544430 0011112234456777788888889
Q ss_pred HHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 487 (834)
.|+.+|..+...+ .-......|+..|-+..++++|++.-++..+ +.++...+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k----~~~q~~~~----------------------- 177 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK----LGGQTYRV----------------------- 177 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----cCCccchh-----------------------
Confidence 9999888887321 2344566777888888888888888777765 22322221
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-- 562 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 562 (834)
.-...|.-|...+....+.+.|..++.+..+ |+ +..--.+...+...|+++.|.+.++...+. .|+
T Consensus 178 -------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl 248 (389)
T COG2956 178 -------EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYL 248 (389)
T ss_pred -------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHH
Confidence 2223344555556666777778888877763 22 223333455677788888888888888884 455
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGC 641 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~ 641 (834)
+.+...|..+|.+.|+.+++...+..+.+. .++.+.-..|.+......-.++|...+ +...-+|+...+..|+...
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 566777778888888888888888877642 334444444444444343444444433 3344456655555554432
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCcee
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 703 (834)
... ++.|++.+.....+.|....++..|.+.
T Consensus 326 l~d-------------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 326 LAD-------------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred hcc-------------------------------ccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 211 1335577777777778776666666543
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.3e-09 Score=116.70 Aligned_cols=249 Identities=16% Similarity=0.190 Sum_probs=164.7
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC--------CCCccc-hHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK--------NRDVAT-WTVMIGSYSQNGGANDALALFPQMFQQDKL 456 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~g 456 (834)
+.|.-..+...|..+|...|+++.|..+|+...+. .+.+.+ .+.+...|...+++++|..+|++++.....
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445566777899999999999999998876532 122222 233556677778888888888777651000
Q ss_pred CcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-ccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 003273 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE-MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535 (834)
Q Consensus 457 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li 535 (834)
+ .|-. |.-..+++.|...|.+.|++++|...++
T Consensus 274 ~--------------------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e-------------- 307 (508)
T KOG1840|consen 274 V--------------------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE-------------- 307 (508)
T ss_pred h--------------------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH--------------
Confidence 0 0110 0223344556667888888888877664
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHH
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKEGLA-PD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG--ISAR----AEHYACIVD 607 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~l~~ 607 (834)
.|++++++ ..|.. |. ..-++.+...|...+.+++|..++....+.+. ..++ ..+++.|..
T Consensus 308 ----------~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 308 ----------RALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred ----------HHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 34444444 22222 23 23355666677788888888887776654433 2222 457888888
Q ss_pred HHhhcCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCC---CCchHHH
Q 003273 608 LLGRANRLDEAVELIEGMP-------M--EPT-PIIWVALLNGCRIHANVELGELAANRLLEL----ESE---KDGSYTL 670 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~-------~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~ 670 (834)
+|...|+++||+++++++- . .+. ...++.|...|.+.++.+.|.+.|+....+ .|+ ...+|..
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 9999999999988888761 1 122 346677888888888888888888876654 344 4468899
Q ss_pred HHHHHHhcCCchhHHHHHHHHH
Q 003273 671 LSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
|+-+|...|++++|.++.....
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999988775
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=7e-08 Score=100.67 Aligned_cols=451 Identities=13% Similarity=0.070 Sum_probs=235.6
Q ss_pred HHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC
Q 003273 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254 (834)
Q Consensus 175 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~ 254 (834)
+=++.+.+.|++++|.+..+.+...++.|......-+-++.+.+++++|+.+.+.-. +..-+.+-+ +=.+|+.-
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~--fEKAYc~Y- 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFF--FEKAYCEY- 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhh--HHHHHHHH-
Confidence 345667778888888888888887775577778888888888888888886554432 111111110 12222210
Q ss_pred CchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHH
Q 003273 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334 (834)
Q Consensus 255 ~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 334 (834)
+.+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+. +...+...+.+-+..-- .+
T Consensus 91 ------rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn----~~dd~d~~~r~nl~a~~--a~ 158 (652)
T KOG2376|consen 91 ------RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN----NSDDQDEERRANLLAVA--AA 158 (652)
T ss_pred ------HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHH--Hh
Confidence 5566677776666444444445555556666777777777777777665 33333333322111000 00
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHh---hhhhchhhhhhHHHHHHHHHhh----hcCCCCCChhhHHHHHHHHHHhCCCh
Q 003273 335 LDVFRQMQFCGLEPNVVTLVSLLSG---CASVGALLLGKETHCYTIKRVL----SVDGSHPDDLMVINALIDMYAKCKSV 407 (834)
Q Consensus 335 ~~l~~~m~~~g~~pd~~t~~~ll~a---~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~y~~~g~~ 407 (834)
... ..|......| ..||..+.+. +...|++..|++++..+.+... ..+.+ ..+...--..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~---------- 225 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEEELNP---------- 225 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHH----------
Confidence 000 1222223333 2344444332 2344566666666655533211 00000 0000000000
Q ss_pred HHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCccc---HHHHHHHHhhhhhHH------
Q 003273 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT---LSCALMACARLAALR------ 478 (834)
Q Consensus 408 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t---~~~ll~a~~~~~~~~------ 478 (834)
.--.|.-.+...|+.++|.+++...++. -.+|... +..=|.+.....++-
T Consensus 226 ------------------IrvQlayVlQ~~Gqt~ea~~iy~~~i~~---~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 226 ------------------IRVQLAYVLQLQGQTAEASSIYVDIIKR---NPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred ------------------HHHHHHHHHHHhcchHHHHHHHHHHHHh---cCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 0111223334455555555555555441 1222211 111111111111100
Q ss_pred --------HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHH-HH-HcCChHHH
Q 003273 479 --------FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN-VVSWTSLMTG-YG-MHGLGDKA 547 (834)
Q Consensus 479 --------~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~~-~~-~~g~~~~A 547 (834)
.+......+.+... .....-+.++.+|. +..+.+.++-...+... ...+.+++.. +. +...+.+|
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk--~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQK--QAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 00111111111110 12223356666665 44566666666666322 2334444433 32 22347788
Q ss_pred HHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--------HhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 548 HWAFDQMRKEGLAPDG--VTFLVLLYACSHSGMVDQGLKYFD--------SMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
.+++...-+. .|.. +.....+......|+++.|.+++. .+.+ .+.. +.+...++.+|.+.+.-+-
T Consensus 361 ~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 361 IELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCcc
Confidence 8888877663 4543 444555556788999999999998 4432 2333 4456778889998887665
Q ss_pred HHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 618 AVELIEGM--------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 618 A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
|.+++.+. ..++. ..+|.-+...-.++|+.++|...++++++..|+|......++-+|+... .+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 55555443 22222 2345555555577899999999999999999999999999999998764 3444444
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=5.1e-09 Score=100.95 Aligned_cols=293 Identities=15% Similarity=0.126 Sum_probs=193.7
Q ss_pred CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhCCChhHH
Q 003273 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-FDS--NVFVCNALMAMYARCDTLSYA 189 (834)
Q Consensus 113 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~~~~~g~~~~A 189 (834)
+.++++|.++|-+|.+.. +.+..+-.+|-+.+-+.|..+.|..+|+.+.++. +.- ...+.-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 577899999999998732 2223344566677888899999999999888753 111 134556778889999999999
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHH
Q 003273 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269 (834)
Q Consensus 190 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~ 269 (834)
+.+|..+.+.+.--..+...|+..|-+..++++|+++-+++.+. +-++..+ -|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~----eIA--------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRV----EIA--------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchh----HHH---------------------
Confidence 99999988763324456778899999999999999999988865 3332221 111
Q ss_pred HHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003273 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349 (834)
Q Consensus 270 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 349 (834)
..|.-|...+....+++.|..++.+..+.+.+ .+..--.+...+...|+++.|++.++...+.+..--
T Consensus 181 -----------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 181 -----------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred -----------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 12334444455556677777777777666444 444444555667777777777777777776654444
Q ss_pred HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHH
Q 003273 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429 (834)
Q Consensus 350 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~ 429 (834)
..+...+..+|...|+.+.+...+..+... .+...+-..+.+.-....-.+.|.....+-..+.|+...+..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 445566666666777776666666665544 223333444444444455566676666665555788888888
Q ss_pred HHHHHHh---cCChhHHHHHHHhhcc
Q 003273 430 MIGSYSQ---NGGANDALALFPQMFQ 452 (834)
Q Consensus 430 li~~~~~---~g~~~~A~~l~~~m~~ 452 (834)
+|..-.. .|...+.+.+++.|..
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHH
Confidence 8776543 3556677777777765
No 61
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=6.5e-07 Score=95.12 Aligned_cols=469 Identities=13% Similarity=0.109 Sum_probs=236.3
Q ss_pred HccCCCchHHHHHHHHHHH-------hCCC-CchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHh
Q 003273 145 CGELPSSRCGSSVHAVICS-------SGFD-SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216 (834)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~-------~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 216 (834)
++..|++..++.+|+...- .|-+ .+-+--.+++.++.+ ++.+|+.+|-+-.. -..-|..|..
T Consensus 500 faai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn~--------te~aigmy~~ 569 (1636)
T KOG3616|consen 500 FAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQNA--------TEEAIGMYQE 569 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhccc--------HHHHHHHHHH
Confidence 3444556666666654331 1211 222233445544443 57777777754221 1234566667
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCH
Q 003273 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296 (834)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~ 296 (834)
..++++|+.+-+.. |.+.-...-.+.+.++. ..|+-++|-++ .+.|- ---+-|+.|.+.|.+
T Consensus 570 lhkwde~i~lae~~----~~p~~eklk~sy~q~l~---------dt~qd~ka~el----k~sdg-d~laaiqlyika~~p 631 (1636)
T KOG3616|consen 570 LHKWDEAIALAEAK----GHPALEKLKRSYLQALM---------DTGQDEKAAEL----KESDG-DGLAAIQLYIKAGKP 631 (1636)
T ss_pred HHhHHHHHHHHHhc----CChHHHHHHHHHHHHHH---------hcCchhhhhhh----ccccC-ccHHHHHHHHHcCCc
Confidence 77778877765433 21111111122233333 22333333222 11111 123456778888877
Q ss_pred HHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHH
Q 003273 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376 (834)
Q Consensus 297 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 376 (834)
-.|.+.-..-.. +..|......+..++.+..-+++|-++|+++.. +...+.++-+-..+..+.++-..
T Consensus 632 ~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf- 699 (1636)
T KOG3616|consen 632 AKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF- 699 (1636)
T ss_pred hHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh-
Confidence 776655321111 112555555555666666666666666666643 11222222222223333332221
Q ss_pred HHHhhhcCCCCCChhhHH-HHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCC
Q 003273 377 IKRVLSVDGSHPDDLMVI-NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455 (834)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 455 (834)
.+|..+... .+-.+-+...|+++.|..-|-+.. ..-.-|.+-....++.+|+.+++.++. .
T Consensus 700 ---------afp~evv~lee~wg~hl~~~~q~daainhfiea~-------~~~kaieaai~akew~kai~ildniqd--q 761 (1636)
T KOG3616|consen 700 ---------AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------CLIKAIEAAIGAKEWKKAISILDNIQD--Q 761 (1636)
T ss_pred ---------hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-------hHHHHHHHHhhhhhhhhhHhHHHHhhh--h
Confidence 111111111 122233344455555555554432 001123344455666677776666654 1
Q ss_pred CCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHH
Q 003273 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR--NVVSWTS 533 (834)
Q Consensus 456 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~ 533 (834)
+.-..-|.-+..-|+..|+++.|.+++. ....++--|+||.+.|++++|.++-.+...| .+.+|-+
T Consensus 762 --k~~s~yy~~iadhyan~~dfe~ae~lf~----------e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 762 --KTASGYYGEIADHYANKGDFEIAEELFT----------EADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred --ccccccchHHHHHhccchhHHHHHHHHH----------hcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 1222334455566666677777666663 2233455667777777777777766665543 2334444
Q ss_pred HHHHHHHcCChHHHHHHHHH-------------------HHHc--CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 534 LMTGYGMHGLGDKAHWAFDQ-------------------MRKE--GLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~-------------------m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
-..-+-.+|++.+|.++|-. |++. ...|+ ..|...+..-+...|++..|...|-+..
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 33444445554444443311 1110 13344 4455666666777788888877775553
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHH------HHhcCcHHHHHHH------H
Q 003273 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME----PTPIIWVALLNG------CRIHANVELGELA------A 654 (834)
Q Consensus 591 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~ll~~------~~~~g~~~~a~~~------~ 654 (834)
-|.+-+++|-..+.+++|..+-+.-.-. .-...|..-+++ +-++|-++.|+.. |
T Consensus 910 ----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~af 979 (1636)
T KOG3616|consen 910 ----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAF 979 (1636)
T ss_pred ----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccch
Confidence 2667888999999999999988765311 112344332222 3455555555432 1
Q ss_pred HHHHhc-----CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 655 NRLLEL-----ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 655 ~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+-++++ ...-+..+..++.-+-..|++++|.+-+-...+
T Consensus 980 d~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 980 DFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 222221 233456788888899999999999877665554
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-07 Score=98.08 Aligned_cols=260 Identities=14% Similarity=0.065 Sum_probs=160.1
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
++.....-..-+...+++.+.+++++...+... +....+..=|.++...|+...--.+-..+++ ..|....+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-------~yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVD-------LYPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHH-------hCCCCCcc
Confidence 444455555667788899999999988876421 3333444445566666665555444444554 56778888
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC-CcccHHHHHHHH
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP-NAFTLSCALMAC 471 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~a~ 471 (834)
|-++.-.|.-.|+..+|++.|.+....+|. ...|-.....|+-.|..++|+..+...-+ +-| ....+..+---|
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar----l~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR----LMPGCHLPSLYLGMEY 390 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH----hccCCcchHHHHHHHH
Confidence 999999999899999999999987744543 46798999999999999999988877754 222 222233333445
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------CChhHHHHHHHHHHHc
Q 003273 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ----------RNVVSWTSLMTGYGMH 541 (834)
Q Consensus 472 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~ 541 (834)
.+.++++.|.+++..+.... |.+|.+.+-+.-+....+.+.+|...|+.... .-..+|+.|..+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 56667777777766665433 25666666666666666666666666665431 0122344444445555
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003273 542 GLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSM 589 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (834)
+.+++|+..|++.+. ..| |..|+.++.-.+...|+++.|...|.+.
T Consensus 469 ~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred hhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555555555555444 223 2444444444444455555555544443
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=1.9e-08 Score=100.24 Aligned_cols=296 Identities=11% Similarity=0.084 Sum_probs=184.4
Q ss_pred CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhc
Q 003273 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262 (834)
Q Consensus 183 ~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~ 262 (834)
.|++..|+++..+-.+.+...+..|..-+.+--+.|+.+.+-.++.+..+. .+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~------------------------ 149 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AG------------------------ 149 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CC------------------------
Confidence 688888888887755554334455555566666777777777777776543 11
Q ss_pred CcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 263 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
.++..++-+........|+++.|..-.+++.+.++. +.........+|.+.|++.+...++..|.
T Consensus 150 --------------~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 150 --------------DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred --------------CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 234455666677788889999999999998888777 77888899999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC
Q 003273 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422 (834)
Q Consensus 343 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 422 (834)
+.|+--|+..-. + ...+++.+++-....+..+.-...++..+.+-+
T Consensus 215 ka~~l~~~e~~~-----------------l-----------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr 260 (400)
T COG3071 215 KAGLLSDEEAAR-----------------L-----------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR 260 (400)
T ss_pred HccCCChHHHHH-----------------H-----------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhh
Confidence 988755442110 0 011222233222222333333334444433222
Q ss_pred -CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHh
Q 003273 423 -DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501 (834)
Q Consensus 423 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 501 (834)
++..-.+++.-+.+.|+.++|.++..+..+ .+..|+ ...+-.+.+.++.+.-.+..+.-.+... .++..+.
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk--~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~ 332 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALK--RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP--EDPLLLS 332 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC--CChhHHH
Confidence 344444455555555666666666555555 444444 1222233333443333333333333222 4557777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
+|...|.+.+.+.+|...|+... .|+..+|+-+..++.+.|+..+|.+.+++....-..|+
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888665 57777888888888888888888888877665434443
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.3e-11 Score=87.37 Aligned_cols=50 Identities=34% Similarity=0.628 Sum_probs=38.8
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh
Q 003273 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362 (834)
Q Consensus 313 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 362 (834)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777888888877777753
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=1.8e-09 Score=121.83 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
++.|...+..+++... .++..+..+..++...|++++|...|++.. .| +...|..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444322 566777888888999999999999999877 34 456788889999999999999999999
Q ss_pred HHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003273 554 MRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT 630 (834)
Q Consensus 554 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 630 (834)
.++ ..|+. ..+..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|.+.++++ +..|+
T Consensus 398 Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999 67763 33344455677789999999999988643 234 4556778889999999999999999887 34455
Q ss_pred H-HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 P-IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
. ..++.+...+...|+ .+...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 345555556677774 788878887775433333344478889999999988887 666554
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.1e-11 Score=86.04 Aligned_cols=50 Identities=30% Similarity=0.575 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003273 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575 (834)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 575 (834)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=2e-08 Score=100.11 Aligned_cols=302 Identities=14% Similarity=0.099 Sum_probs=209.9
Q ss_pred HHHHHHHH--hCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003273 104 NALIRRAV--RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181 (834)
Q Consensus 104 ~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~ 181 (834)
..+..+.. ..|+|.+|..+..+-.+.+-.|- ..|..-..+..+.|+.+.+-.++.++.+..-.++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 33444443 36999999999988776653332 2354555677788999999999999998744677788888899999
Q ss_pred hCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhh
Q 003273 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261 (834)
Q Consensus 182 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~ 261 (834)
..|+.+.|+.-.+++.+.++.+.........+|.+.|++.+...++..|.+. +.-.|..
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e-------------------- 223 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEE-------------------- 223 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHH--------------------
Confidence 9999999999999888877778999999999999999999999999999987 5433221
Q ss_pred cCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 003273 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 341 (834)
+.+ -...+|+.+++-....+..+.-...++..+.+ .+-++..-.+++.-+.+.|+.++|.++..+-
T Consensus 224 ------~~~-------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 224 ------AAR-------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred ------HHH-------HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 110 01234444444444444444434444444332 2224444555555666666666666666666
Q ss_pred HHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 003273 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421 (834)
Q Consensus 342 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 421 (834)
.+.+..|+..+ +-.+.+.++.+.-.+..+...+ ..+.++..+.+|...|.+.+.+.+|...|+......
T Consensus 290 Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~-------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 290 LKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLK-------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHhccChhHHH----HHhhcCCCCchHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 66555454221 1223334444444444444444 345566788899999999999999999999888778
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 422 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
|+..+|+-+..+|.+.|++.+|.+.+++.+.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999999999999999999999988887764
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.2e-09 Score=103.24 Aligned_cols=235 Identities=12% Similarity=0.089 Sum_probs=182.1
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
.|.+--+.+..+|.+.|.+.+|.+.|+.-.+..|-+.||-.+-..|.+..+++.|+.+|.+-++ ..|-.+||.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld----~fP~~VT~l--- 293 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD----SFPFDVTYL--- 293 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh----cCCchhhhh---
Confidence 3555557788999999999999999998887778888998899999999999999999998876 667666662
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGD 545 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 545 (834)
..+...+-..++.++|.++|+...+ -++.+...+..+|.-.++++
T Consensus 294 --------------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 294 --------------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred --------------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 2233344455666777777776653 24445555666777788888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
-|+..|+++++.|+. ++..|..+.-+|...+++|-++..|.....- .-.|+
T Consensus 342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~--------------------------- 392 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPG--------------------------- 392 (478)
T ss_pred HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcc---------------------------
Confidence 888888888888753 4666777777888888888777777665421 11111
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 626 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.-..+|..|.......||+..|.+.++.++..+|++..+++.|+-+-.+.|+.++|+.+++..+..
T Consensus 393 ---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 393 ---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ---hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 124578888888888999999999999999999999999999999999999999999999988764
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=5.6e-07 Score=98.95 Aligned_cols=238 Identities=15% Similarity=0.183 Sum_probs=160.5
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHH----------------------------HHhh
Q 003273 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM----------------------------ACAR 473 (834)
Q Consensus 422 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~----------------------------a~~~ 473 (834)
.|+...+.-+.++...+-+.+-+++++++.-....+. ....+..++- .+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs-e~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS-ENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc-cchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 3555566677888889999999999998875211111 1111111111 1112
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
.+.+++|..++...- .+....+.|++ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+
T Consensus 1061 ~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh
Confidence 222333333332211 12222222222 234555555555555443 4699999999999999999887754
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 003273 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633 (834)
Q Consensus 554 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 633 (834)
. -|+..|..++.++++.|.+++-.+++...+++ .-+|.++ +.|+-+|++.+++.|-++++. -||..-
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~ 1196 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVAN 1196 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchh
Confidence 2 35778999999999999999999999877654 6666654 568999999999999888873 377777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
......-|...|.++.|.-.|. +...|..|+..+...|.+..|...-++..
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888999999998887775 34668888999999999988877655543
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=7.7e-06 Score=86.46 Aligned_cols=402 Identities=12% Similarity=0.126 Sum_probs=236.0
Q ss_pred chHHHHHHhhCCCchhHHHHhccc----CC-CCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHH
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRI----SP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 144 (834)
|-.-+....++|++..-+..|++. |. ... ..|...+.-....+-++-+..+|++.++- .|. .-.--+..
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~--rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD--RIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc--cchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 555566667789999999999874 21 222 56998898888899999999999998763 343 35666777
Q ss_pred HccCCCchHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhCCChhH---HHHHHHhcCCCCCCC--cchHHHHHHH
Q 003273 145 CGELPSSRCGSSVHAVICSSG------FDSNVFVCNALMAMYARCDTLSY---ARQLFDEMFQPGICD--IVSWNTIVAA 213 (834)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~li~~ 213 (834)
++..+++.+|.+.++.++... .+.+-..|+-+-+..++.-+.-. ...++..+..+ .+| ...|++|..-
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r-ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR-FTDQLGFLWCSLADY 257 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc-CcHHHHHHHHHHHHH
Confidence 888999999998888776321 25566678887777776544322 33344444333 123 3469999999
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh-------------hcCcHHHHHHHHHhcCC---
Q 003273 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------QCGMMEEAKKVFERMKV--- 277 (834)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~-------------~~g~~~~A~~~~~~~~~--- 277 (834)
|.+.|.++.|.++|++..+. ..+...|..+..+++......... ..-+++-...-|+.+..
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999887653 223344555555554332211111 11123333334443321
Q ss_pred ------------CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCC------CeeeHHHHHHHHHhcCChhHHHHHHH
Q 003273 278 ------------KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL------NVVTWSAVIAGYAQRGHGHEALDVFR 339 (834)
Q Consensus 278 ------------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~l~~ 339 (834)
.++..|..-+..| .|+..+-...|.+.... +.| -...|-.+...|-.+|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1344455444433 45667777777776653 333 12357788888889999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHhhh----hhchhhhhhHHHHHHHHHh-----hhcCCCCCChhh------HHHHHHHHHHhC
Q 003273 340 QMQFCGLEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRV-----LSVDGSHPDDLM------VINALIDMYAKC 404 (834)
Q Consensus 340 ~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~------~~~~li~~y~~~ 404 (834)
+..+... +...-+..+-..|+ +..+++.|..+.+.+...- ...+++.++... +|..+++.--.+
T Consensus 412 ka~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 412 KATKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HhhcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 8876543 22222333333333 3345555555554443210 112233344333 445556666778
Q ss_pred CChHHHHHHHHhcCCCCCCccchHHHH---HHHHhcCChhHHHHHHHhhcccCCCCcCCcc----cHHHHHHHHhhhhhH
Q 003273 405 KSVDVARVMFDAIAPKNRDVATWTVMI---GSYSQNGGANDALALFPQMFQQDKLVKPNAF----TLSCALMACARLAAL 477 (834)
Q Consensus 405 g~~~~A~~~f~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~----t~~~ll~a~~~~~~~ 477 (834)
|-++....+++++.... +.|=..++ .-+-.+.-++++.+.|++-+. ---.|+.. ||....-.=.....+
T Consensus 491 gtfestk~vYdriidLr--iaTPqii~NyAmfLEeh~yfeesFk~YErgI~--LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLR--IATPQIIINYAMFLEEHKYFEESFKAYERGIS--LFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred ccHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc--cCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 88999999999887322 22221111 112345667889998886654 22233332 232222221222345
Q ss_pred HHHHHHHHHHHH
Q 003273 478 RFGRQIHAYVLR 489 (834)
Q Consensus 478 ~~a~~~~~~~~~ 489 (834)
+.++.+|.+.++
T Consensus 567 EraRdLFEqaL~ 578 (835)
T KOG2047|consen 567 ERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHh
Confidence 666666666665
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=3.1e-07 Score=101.23 Aligned_cols=570 Identities=13% Similarity=-0.001 Sum_probs=298.5
Q ss_pred chhHHHHhcccCCCCcc-hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHH
Q 003273 83 PSPALSLLQRISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 83 ~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (834)
...|...|-+-.+-+++ ...|..|...|....+...|...|+...+.+ ..|..........+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555443333331 2456666666666666666666666665432 223344556666677777777766662221
Q ss_pred HHhC-CCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc
Q 003273 162 CSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240 (834)
Q Consensus 162 ~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 240 (834)
.+.. ...-..-|-.+.-.|.+.++..+|..-|+...+..|.|...|..+..+|...|++..|+++|.+.. -+.|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHh
Confidence 1110 001112233344456667777777777777766666677777777777777777777777777665 334432
Q ss_pred cchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC----------CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-
Q 003273 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV----------KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE- 309 (834)
Q Consensus 241 ~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 309 (834)
+|.-...+.... ..|.+.+|...+..+.. .-..++-.+...+.-.|-...|.+.|++-.+.
T Consensus 630 -~y~~fk~A~~ec-------d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 630 -KYGRFKEAVMEC-------DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred -HHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 222222221100 34555555555544331 11223333333444444444555555443322
Q ss_pred ------CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh---h---hhhHHHHHHH
Q 003273 310 ------NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL---L---LGKETHCYTI 377 (834)
Q Consensus 310 ------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~ 377 (834)
...-+.-.|-.+-. |..+|-... .. .|+......+..-.-..+.. + .|-+.+....
T Consensus 702 ~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 11112223332222 222333222 11 22222222222212222222 1 1111111111
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHHHh----CC----ChHHHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHH
Q 003273 378 KRVLSVDGSHPDDLMVINALIDMYAK----CK----SVDVARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFP 448 (834)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~li~~y~~----~g----~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 448 (834)
.+..+...|..|+.-|.+ +| +...|...+.+..+.. .+...||.|... ...|++.-|.--|-
T Consensus 770 --------sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 770 --------SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred --------HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhh
Confidence 112223444444444333 22 2345677777655333 466778777655 55566666666665
Q ss_pred hhcccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---
Q 003273 449 QMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--- 524 (834)
Q Consensus 449 ~m~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--- 524 (834)
+-.. ..| ...+|..+--.|....+++.|.+.+........ .+...+-...-.-...|+.-++..+|..-.
T Consensus 841 ks~~----sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 841 KSRF----SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--LNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhh----ccccchhheeccceeEEecccHHHhhHHHHhhhhcCc--hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 5543 333 455666666666777788888888877665432 233322222222345677777777776521
Q ss_pred -----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 525 -----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE--------GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 525 -----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
-++...|-.-..-..++|+.++-+...+++-.. +-.|+ ...|...+....+.+.+.+|.+...+.+
T Consensus 915 ~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 915 SKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred ccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 255556655555566777766655444433221 12454 7778888888888888888877776654
Q ss_pred HhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 591 KEFGISARAEHYA----CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 591 ~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.-...+-+...|+ ....++...|.++.|...+...+.+.+..+-.+-+..+ -.++++.+.+.|++++.+-.++..
T Consensus 995 glLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 995 GLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccc
Confidence 2222233444454 33455666788888888877776555655555555543 346788999999998887543332
Q ss_pred ---hHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 667 ---SYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 667 ---~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
....++......+.-+.|....-+..
T Consensus 1074 ~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1074 KVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 33445555566677777776654444
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.3e-07 Score=92.49 Aligned_cols=306 Identities=11% Similarity=-0.003 Sum_probs=188.2
Q ss_pred CCHhHHHHHHHhhhh--hchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc
Q 003273 348 PNVVTLVSLLSGCAS--VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425 (834)
Q Consensus 348 pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 425 (834)
|...+...-+.+++. .++-..+.+.+..+.+. ..++.++....++.+.|...|+.++|...|++....+|+.+
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~-----~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i 266 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN-----TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV 266 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh-----ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh
Confidence 333344444444332 33333344444443333 15677888888888888888888888888888764444332
Q ss_pred c-hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 426 T-WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 426 ~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
+ ...-..-+.+.|+.+....+...+... .+-....+..-+...-...+++.|..+-...++... .+...+-.-.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG 341 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKG 341 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhcc
Confidence 2 111122345667777777776666541 111111122222222344566666666666655433 3333333334
Q ss_pred HHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHH-hcCCH
Q 003273 505 DMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL-YACS-HSGMV 579 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~ 579 (834)
..+...|+.++|.-.|+... . -+..+|..|+..|...|...+|.-+-+...+. +.-+..+...+. ..|. ....-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 56667788888888887665 3 36778888888888888888888877776663 223355554442 2222 23335
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|..++++.. .+.|+ ....+.+..++.+.|..++++.++++. ...||....+.|....+..+.+++|...|..+
T Consensus 421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 67777777654 55666 345566777788888888888888776 44578888888888888888888888888888
Q ss_pred HhcCCCCCch
Q 003273 658 LELESEKDGS 667 (834)
Q Consensus 658 ~~~~p~~~~~ 667 (834)
+.++|+|..+
T Consensus 498 Lr~dP~~~~s 507 (564)
T KOG1174|consen 498 LRQDPKSKRT 507 (564)
T ss_pred HhcCccchHH
Confidence 8888876543
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=6.8e-09 Score=107.08 Aligned_cols=211 Identities=16% Similarity=0.033 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHhCC-Cc-cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHH
Q 003273 476 ALRFGRQIHAYVLRNQY-EM-LIPFVANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWA 550 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~-~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l 550 (834)
..+.+..-+..++.... .+ .....+..+...|.+.|+.++|...|++.. . .+...|+.+...+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555654321 11 224567788889999999999999999887 3 4577999999999999999999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-C
Q 003273 551 FDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-P-M 627 (834)
Q Consensus 551 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~ 627 (834)
|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 7887 67788888899999999999999998874 4554332222333455678999999999664 2 2
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 628 EPTPIIWVALLNGCRIHANVELGELAANRLL-------ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.|+ .|..- ......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 196 ~~~--~~~~~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKE--QWGWN-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Ccc--ccHHH-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233 33321 222234443333 2333333 5566677899999999999999999999999988654
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1e-06 Score=93.25 Aligned_cols=453 Identities=15% Similarity=0.129 Sum_probs=264.1
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCC
Q 003273 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 219 (834)
..++.| ..+....+....+.+++ +++....+.....-.+...|+-++|......-...++.+-+.|..+.-.+-...+
T Consensus 13 ~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 13 RALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh
Confidence 334433 44556666666666666 3444455555555556677888888888777666655677889999888888889
Q ss_pred hhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHH
Q 003273 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299 (834)
Q Consensus 220 ~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 299 (834)
+++|++.|+.... +.||.. ..|.-+.-.-++.|+++..
T Consensus 91 Y~eaiKcy~nAl~---~~~dN~---------------------------------------qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 91 YDEAIKCYRNALK---IEKDNL---------------------------------------QILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred HHHHHHHHHHHHh---cCCCcH---------------------------------------HHHHHHHHHHHHHHhhhhH
Confidence 9999999988873 344432 2222222222344455544
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHhh------hhhchhhhhhHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGC------ASVGALLLGKET 372 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~------~~~~~~~~a~~~ 372 (834)
...-.+..+..+. ....|.....++.-.|++..|..++++..+.. -.|+...|.-...-. ...|.++.+.+.
T Consensus 129 ~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4444444443222 44567777777777777777777777776654 245555554333322 233444444333
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH-hcCChhHHH-HHHHhh
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS-QNGGANDAL-ALFPQM 450 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~-~l~~~m 450 (834)
...... ........--.-.+.+.+.+++++|..++..+....||.+.|+....... +-.+.-+++ .+|...
T Consensus 208 L~~~e~-------~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 208 LLDNEK-------QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHhhhh-------HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 332222 22223334445567889999999999999999988898888776654443 444444555 566655
Q ss_pred cccC-CCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHH----HHHHHhhcC-
Q 003273 451 FQQD-KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT----ARVVFDNLK- 524 (834)
Q Consensus 451 ~~~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~~~~~~- 524 (834)
.++- ....|-.... +++. ...-.+....++....+.|+ +.++..+...|-.-...+- +..+...+.
T Consensus 281 s~~y~r~e~p~Rlpl-svl~---~eel~~~vdkyL~~~l~Kg~----p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPL-SVLN---GEELKEIVDKYLRPLLSKGV----PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred hhcCcccccchhccH-HHhC---cchhHHHHHHHHHHHhhcCC----CchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 4310 0111111111 1111 11112222233333444444 3444555555443221111 111111111
Q ss_pred -------------CCChhHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 525 -------------QRNVVSWTS--LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 525 -------------~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
.|....|.. ++..|-..|+++.|+..++..+. -.|+ ..-|..=.+.+.+.|++++|..+++.
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 355556655 56677889999999999999988 5787 45566667889999999999999998
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHHH--HHhcCcHHHHHHHHHH
Q 003273 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP-T--------PIIWVALLNG--CRIHANVELGELAANR 656 (834)
Q Consensus 589 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~--------~~~~~~ll~~--~~~~g~~~~a~~~~~~ 656 (834)
..+ --.||...-.--+.-..|+.+.++|.++.....-.. + ...|-.+-.+ |.++|++.+|.+-+..
T Consensus 431 a~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 431 AQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 863 223454444456666778999999999876652111 1 2356555444 6777777666654433
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.1e-07 Score=93.38 Aligned_cols=442 Identities=13% Similarity=0.110 Sum_probs=237.9
Q ss_pred HHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 003273 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA--LMAMYA--R 182 (834)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~~~--~ 182 (834)
+..+..+|++++|.....++...+ +-|...+.+-+-+..+.+.+++|..+.+ +.+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 344556788899999888887654 4444557676777777888887774332 2221 111222 244554 7
Q ss_pred CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CCccchHhHHHHhhccCCchhhhh
Q 003273 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ-GDGVSLVNALSACASLGTWSRGKQ 261 (834)
Q Consensus 183 ~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~t~~~~l~a~~~~~~~~~~~~ 261 (834)
.++.++|...++..... |..+...-...+.+.|++++|+++|+.+.+. +.. -|...-.+++.+-+.
T Consensus 92 lnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~--------- 158 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAA--------- 158 (652)
T ss_pred cccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHh---------
Confidence 89999999999855554 5556666677889999999999999999765 221 122222233332221
Q ss_pred cCcHHHHHHHHHhcCCC---ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-------------CCCCeee-HHHHHHH
Q 003273 262 CGMMEEAKKVFERMKVK---DVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-------------VKLNVVT-WSAVIAG 324 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~~-~~~li~~ 324 (834)
..+. +.+..+.. +-..+....-.+...|++.+|+++++.....+ +.-...+ ---|.-.
T Consensus 159 ----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 ----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred ----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0110 23333322 23333344556778999999999998873211 0001111 1123345
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhH---HHHHHHhhhhhchhhhh--hHHHHH----HHHHhhh-cCCCCCChhhHH
Q 003273 325 YAQRGHGHEALDVFRQMQFCGLEPNVVT---LVSLLSGCASVGALLLG--KETHCY----TIKRVLS-VDGSHPDDLMVI 394 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t---~~~ll~a~~~~~~~~~a--~~~~~~----~~~~~~~-~~~~~~~~~~~~ 394 (834)
+...|+.++|..+|...++... +|... +..=|.+...-.++..+ ...+.. ....... ...........-
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999988654 34322 22222222222222211 000000 0000000 000111122233
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh-cCChhHHHHHHHhhcccCCCCcCCc--ccHHHHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ-NGGANDALALFPQMFQQDKLVKPNA--FTLSCALMAC 471 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~g~~p~~--~t~~~ll~a~ 471 (834)
+.|+.+|. +..+.++++-...+...|....=+.+..++.. ...+.+|.+++...-+ -.|+. ......+.-.
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~----~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD----GHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----cCCchhHHHHHHHHHHH
Confidence 45566665 44556667666666433443333333333322 2356777777777654 23433 3334444555
Q ss_pred hhhhhHHHHHHHHH--------HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHH----
Q 003273 472 ARLAALRFGRQIHA--------YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK------QRNVVSWTS---- 533 (834)
Q Consensus 472 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~------~~~~~~~~~---- 533 (834)
...|+++.|..++. .+.+.+ ..|.+..+++.+|.+.++.+.|..++++.. .+.....+.
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~---~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAK---HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhc---cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 67788888888877 333333 345566777788888777777777766554 112222222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
...--.++|+.++|..+++++.+. ..+|..+...++.+|+.. +++.|..+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 222233456666666666666662 233455566666665554 34444443
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=2.8e-08 Score=99.50 Aligned_cols=198 Identities=16% Similarity=0.105 Sum_probs=129.4
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...+..+...|...|++++|++.|++..+ ..| .+...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p-----------------------------------~~~~~~~~l 71 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE----HDP-----------------------------------DDYLAYLAL 71 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCc-----------------------------------ccHHHHHHH
Confidence 34566677777888888888888887765 234 233344556
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 003273 504 IDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMV 579 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 579 (834)
...|...|++++|.+.|++.. ..+...+..+...+...|++++|...|++.......|. ...+..+..++...|++
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 666667777777777776655 23445666667777777777777777777776432232 34555666677777888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-M-EPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|...++...+. .+.+...+..+...+...|++++|.+.+++.. . +.+...+..+...+...|+.+.|....+.+
T Consensus 152 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 152 DKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877777642 22235566777777777888888877777651 1 234455556666677778888887777766
Q ss_pred HhcCC
Q 003273 658 LELES 662 (834)
Q Consensus 658 ~~~~p 662 (834)
.+..|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 65543
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=2e-08 Score=92.77 Aligned_cols=162 Identities=16% Similarity=0.118 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVD 607 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 607 (834)
....|.-+|.+.|+...|..-+++.++ ..|+ ..++..+...|.+.|..+.|.+.|+... .+.| +.++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345567789999999999999999999 6787 7788888889999999999999999887 4555 4678899999
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 608 LLGRANRLDEAVELIEGMPMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.+|..|++++|...|++....|+ ..+|.++.....+.|+.+.|+..+++.++++|+++.+...+++...+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998844443 45888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 003273 684 VARIRSLMKHTGV 696 (834)
Q Consensus 684 a~~~~~~m~~~~~ 696 (834)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=4e-08 Score=110.97 Aligned_cols=178 Identities=12% Similarity=0.024 Sum_probs=143.5
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 510 SGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
.+++++|...+++..+ .+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3568999999998873 3667888888889999999999999999999 6787 66788888899999999999999
Q ss_pred HHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 586 FDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMP--MEPT-PIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 586 ~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
++... .+.|+. ..+..+...+...|++++|++.+++.. ..|+ +..+..+..++...|+.++|...++++....
T Consensus 395 ~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 99987 445653 233344555777899999999998862 2354 4456677777889999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 662 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|++......++..|...| ++|...++.+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 988888888888998888 4788877776653
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.2e-05 Score=87.27 Aligned_cols=206 Identities=16% Similarity=0.171 Sum_probs=129.8
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
.+..|..+|..|.-+...+|+++.+.+.|++..... .....|+.+-..|...|....|+.+++.-.. ..-.|+..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~--~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK--KSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc--cccCCCcchH
Confidence 456788899999999999999999999999875322 3567799999999999999999999998766 3233655443
Q ss_pred HHH-HHHH-hhhhhHHHHHHHHHHHHHhC--CC-ccchhHHhHHHHHHHhc-----------CCHHHHHHHHhhcC----
Q 003273 465 SCA-LMAC-ARLAALRFGRQIHAYVLRNQ--YE-MLIPFVANCLIDMYSRS-----------GDIDTARVVFDNLK---- 524 (834)
Q Consensus 465 ~~l-l~a~-~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~---- 524 (834)
..+ -..| .+.+..++|..+-..++... .. ...+..+-.+.-+|... ....++.+.+++..
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333 3344 34566777777666665511 10 02334444444444422 11344555666554
Q ss_pred -CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 525 -QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 525 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
.|++..|-+ --|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|+.+.+....++|.
T Consensus 476 ~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 476 TDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 233333332 235556677777777777777544445666666666666666777766666655544443
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=2.6e-08 Score=96.01 Aligned_cols=222 Identities=15% Similarity=0.070 Sum_probs=132.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 363 (834)
+-|..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+-.+++.|+.+|.+-++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld-------------------- 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD-------------------- 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--------------------
Confidence 45666777777777777777766554 33455666666677777777777766666554
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhH
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGAND 442 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 442 (834)
.+|-|+.........+-..++.++|.++++...+.++ ++.+...+..+|.-.++++-
T Consensus 285 ----------------------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 285 ----------------------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred ----------------------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHH
Confidence 3444444444455556666777777777777765554 56666667777777777777
Q ss_pred HHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 443 A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
|+..|+++++ .|+ .++..++.+.-++.-.++++-++.-|.+
T Consensus 343 AlryYRRiLq--mG~-------------------------------------~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 343 ALRYYRRILQ--MGA-------------------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHH--hcC-------------------------------------CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 7777777776 443 4555555555555555555555555554
Q ss_pred cC----CCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 523 LK----QRN--VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 523 ~~----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
.. +|+ ...|..+.......|++..|.+.|+-.+. -.|+ ...++.|.-.-.+.|++++|..++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 43 222 22455555555555666666666555544 2333 4455555555555555555555555543
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=3.9e-06 Score=82.20 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHH--HHhcC-------ChhHHHHHHHhhcccCCCCcCCcc-c
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS--YSQNG-------GANDALALFPQMFQQDKLVKPNAF-T 463 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~--~~~~g-------~~~~A~~l~~~m~~~~~g~~p~~~-t 463 (834)
--.|+-.|.+.+++++|..+.+.+....| +.-++.+ ++..| ...-|.+.|+-.-. .+..-|.+ .
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP----~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~--Sa~ecDTIpG 361 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTP----YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE--SALECDTIPG 361 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCCh----HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc--cccccccccc
Confidence 34567789999999999999988863222 2222222 22223 23345555544433 34443332 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH-HHHH
Q 003273 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLM-TGYG 539 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~ 539 (834)
-.++.+.+.-.-.++....++..+...-.. .|...+ .+..+++..|.+.+|+++|-.+.. +|-.+|-+++ .+|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 223333333344455555554444433222 222222 345555666666666666655553 2334444433 3455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHH
Q 003273 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL-YACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 602 (834)
+.+.++.|.+++-++- ...+..+...+| .-|.+.+.+=-|.+.|+.+. .++|+++.|
T Consensus 440 ~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 5555555554443331 112233333332 24555555555555555442 344444444
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=5.8e-08 Score=104.22 Aligned_cols=250 Identities=17% Similarity=0.180 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCC-----C--CCCcch-HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCcc
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQP-----G--ICDIVS-WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 241 (834)
..+...|..+|...|+++.|..+++...+. | -|.+.+ -+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 456666999999999999999999875433 2 233332 445677888999999999999888642
Q ss_pred chHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-----CC-CCCe
Q 003273 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE-----NV-KLNV 315 (834)
Q Consensus 242 t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~ 315 (834)
-..+|..+...-..+++.|...|.+.|++++|...+++..+- |. .|.+
T Consensus 271 --------------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 271 --------------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred --------------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 011111222223456788888899999999999888765431 10 0111
Q ss_pred e-eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCC-ChhhH
Q 003273 316 V-TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMV 393 (834)
Q Consensus 316 ~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (834)
. .++.++..+...+++++|..+++ ...+......+... .-..+
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q-----------------------------------~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQ-----------------------------------KALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHH-----------------------------------HHHHHHHhhccccchHHHHH
Confidence 1 13333444444555555555554 44443332222222 34567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCC-----C----CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc---
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKN-----R----DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA--- 461 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~--- 461 (834)
++.|...|.+.|++++|+++|+++.... . .-...+.|...|.+.+++.+|.++|.+...-..-+.|+.
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 8999999999999999999999875431 1 134567888889999999999998887654111122332
Q ss_pred -ccHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003273 462 -FTLSCALMACARLAALRFGRQIHAYVL 488 (834)
Q Consensus 462 -~t~~~ll~a~~~~~~~~~a~~~~~~~~ 488 (834)
.+|..+...|...|+++.|.++...+.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234444444444444444444444443
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-06 Score=87.22 Aligned_cols=364 Identities=11% Similarity=0.035 Sum_probs=229.2
Q ss_pred HHHHHHhhCCCchhHHHHhcccCCCCcchhhH-HHHHHHHHhCC-C-chh-------------HHHHHHHHHHcC-----
Q 003273 72 HLIAAYVSHNAPSPALSLLQRISPSPFSVFWW-NALIRRAVRLR-L-PDN-------------AFRLFLQMMRRG----- 130 (834)
Q Consensus 72 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-~~li~~~~~~g-~-~~~-------------a~~~~~~m~~~g----- 130 (834)
..+..|...++-+.|.....+.|+... ..- |.|+.-+-..| + .++ |+....-..+.+
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~r--~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTLR--SPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCcccc--chhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 355667777888899999988886554 223 33333333332 1 111 222222222222
Q ss_pred ----------CCCCcccHHHHHHHHcc--CCCchHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcC
Q 003273 131 ----------WHPDEYTFPFVLKACGE--LPSSRCGSSVHAVICS-SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197 (834)
Q Consensus 131 ----------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 197 (834)
+.|...+...-+.+++. .++...+.+.+-.+.. .-++.|+....++...|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 22333333333333332 2333333343333333 2367788899999999999999999999999888
Q ss_pred CCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC
Q 003273 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277 (834)
Q Consensus 198 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 277 (834)
..++-++.+.....-.+.+.|+.+..-.+...+-.. . +-...-| ++.+|..- ...+++.|+.+-++..+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~-~~ta~~w--fV~~~~l~-------~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-V-KYTASHW--FVHAQLLY-------DEKKFERALNFVEKCID 328 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-h-hcchhhh--hhhhhhhh-------hhhhHHHHHHHHHHHhc
Confidence 774434444444445567788888887777776532 1 0111111 11111100 34556667666665543
Q ss_pred ---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003273 278 ---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354 (834)
Q Consensus 278 ---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 354 (834)
+++..+-.-...+...|+.++|.-.|+..+...+. +..+|..|+..|...|++.||.-+-+...+. +..+..+++
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 34555555567788899999999999988765444 7889999999999999999988776654432 112233333
Q ss_pred HH--HHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHH
Q 003273 355 SL--LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432 (834)
Q Consensus 355 ~l--l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 432 (834)
.+ .-.+-....-+.|+.+++..++ ..|.-....+.+...+...|..+++..+++.-....+|....+.+..
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~-------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLK-------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhc-------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 33 1122233345677777777665 23444556778888889999999999999988766789999999999
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.+...+.+.+|++.|...++ +.|+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr----~dP~~ 504 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALR----QDPKS 504 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHh----cCccc
Confidence 99999999999999999877 56643
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=2.1e-07 Score=96.08 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=148.5
Q ss_pred ChHHHHHHHHhcCCCC---C--CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHH
Q 003273 406 SVDVARVMFDAIAPKN---R--DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 480 (834)
..+.+..-+.++.... + ....|..+...|...|+.++|...|++.++ ..|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P--------------------- 95 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA----LRP--------------------- 95 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCC---------------------
Confidence 3444555554444221 1 123466666667777777777777777665 344
Q ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003273 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557 (834)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 557 (834)
.++..++.+...|...|++++|...|++.. .| +..+|..+...+...|++++|++.|++..+
T Consensus 96 --------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~- 160 (296)
T PRK11189 96 --------------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ- 160 (296)
T ss_pred --------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 566778889999999999999999999886 34 466888888899999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH--HHHHHHHHhC-CCC----C-
Q 003273 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL--DEAVELIEGM-PME----P- 629 (834)
Q Consensus 558 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~~----p- 629 (834)
..|+..........+...++.++|...|..... ...|+... ..++..+ .|++ +++.+.+.+. ... |
T Consensus 161 -~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 161 -DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAER 234 (296)
T ss_pred -hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHH
Confidence 567643222222234556789999999976553 33343222 2333333 4444 3334333322 111 2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESE-KDGSYTLLSNIY 675 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~ 675 (834)
....|..+...+...|+.++|+..|+++++.+|. ....-..++...
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 2357889999999999999999999999999974 444444444443
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=1.4e-05 Score=85.29 Aligned_cols=200 Identities=16% Similarity=0.096 Sum_probs=95.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC-----hhHHHHHH------
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN-----VVSWTSLM------ 535 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-----~~~~~~li------ 535 (834)
+..-+...|++..|..-+ ....-+.+-++||..++-+++|.++-+.---.| ...|..-|
T Consensus 888 f~~e~e~~g~lkaae~~f----------lea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHF----------LEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHhccChhHHHHHH----------HhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 334444455555555544 223334677788888888888888776443222 22343222
Q ss_pred HHHHHcCChHHHHH-------------HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh--cCC-----
Q 003273 536 TGYGMHGLGDKAHW-------------AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE--FGI----- 595 (834)
Q Consensus 536 ~~~~~~g~~~~A~~-------------l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~----- 595 (834)
..+.++|..++++. +-+-..+. -.| .....+..-+...|++++|.+.+-+.++- |++
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~--~vhlk~a~~ledegk~edaskhyveaiklntynitwcqa 1034 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMG--EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQA 1034 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCc--cchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhc
Confidence 22334444444333 22222211 111 12223334456788888887776655532 111
Q ss_pred CCChHHH---------HHHHHHHhhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 596 SARAEHY---------ACIVDLLGRANRLDEAVELIEGMPMEPTP--IIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 596 ~p~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
.|+..-. .--+.++.+..++..|..+-+.-- ||. .++..-..+....|+...|+..+-+ ...|+
T Consensus 1035 vpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fllr--ankp~- 1109 (1636)
T KOG3616|consen 1035 VPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLLR--ANKPD- 1109 (1636)
T ss_pred ccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhheee--cCCCc-
Confidence 1111000 012334444444555444443321 221 2333333334455666555554222 22343
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHH
Q 003273 665 DGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 665 ~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
...+-|...+.|.+|.++-+
T Consensus 1110 -----i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1110 -----IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred -----hHHHHHHHhccChHHHHHHH
Confidence 34567889999999998754
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=5.1e-06 Score=92.04 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCCc-hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-Cccch
Q 003273 166 FDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-DGVSL 243 (834)
Q Consensus 166 ~~~~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~ 243 (834)
+.++ ...|..|...|...-+...|.+.|+...+-+..|..+|......|++..+++.|..+.-...+. .| -...+
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~~k~ 563 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFACKE 563 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHHHHh
Confidence 3444 4578899999988888999999999988887778999999999999999999999984333221 11 00111
Q ss_pred HhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHH
Q 003273 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320 (834)
Q Consensus 244 ~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 320 (834)
+-+-.+.. .. +.++...|..-|+... ..|...|..+..+|.++|++..|.++|.+.... ++.++-.
T Consensus 564 nW~~rG~y-----yL--ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~s~y~ 632 (1238)
T KOG1127|consen 564 NWVQRGPY-----YL--EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL----RPLSKYG 632 (1238)
T ss_pred hhhhcccc-----cc--CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc----CcHhHHH
Confidence 11111111 10 4566666777676554 347888999999999999999999999988765 2222222
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHH
Q 003273 321 ---VIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 321 ---li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
....-+..|.+.+|++.+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22344678999999998888764
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=5.8e-05 Score=80.41 Aligned_cols=412 Identities=11% Similarity=0.035 Sum_probs=253.9
Q ss_pred cCcHHHHHHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 003273 262 CGMMEEAKKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 338 (834)
.|+.++|......... .+.+.|..+.-.+-...++++|++.|......+.. |...|.-+--.-.+.|+++...+.-
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3555555555544442 45678888888888889999999999998877655 7777887777778888888888777
Q ss_pred HHHHHCCCCCC-HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHH------HHHHHhCCChHHHH
Q 003273 339 RQMQFCGLEPN-VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL------IDMYAKCKSVDVAR 411 (834)
Q Consensus 339 ~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l------i~~y~~~g~~~~A~ 411 (834)
....+.. |. ...|..+..+..-.|+...+..+.+...+.. ...|+...+.-. .....+.|..+.|.
T Consensus 133 ~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~-----~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 133 NQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ-----NTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 7776632 33 3456667777778899999999998888862 123444333322 23456788888888
Q ss_pred HHHHhcCCCCCCccch-HHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh--hhhhHHHHHHHHHHHH
Q 003273 412 VMFDAIAPKNRDVATW-TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA--RLAALRFGRQIHAYVL 488 (834)
Q Consensus 412 ~~f~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~ 488 (834)
+-+......--|-..+ .+...-+.+.+++++|..++...+. ..||..-|.-.+..|. -.+..+.-..+++...
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE----RNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh----hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8877665322343333 3455677899999999999999987 6788888777766665 2333333335555443
Q ss_pred HhCCCccchhHHhHHHHHHHhcCCHHHH-HHHHhhcCCCC-hhHHHHHHHHHHHcCChHH----HHHHHHHHHHcC----
Q 003273 489 RNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFDNLKQRN-VVSWTSLMTGYGMHGLGDK----AHWAFDQMRKEG---- 558 (834)
Q Consensus 489 ~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g---- 558 (834)
+.-.. ........ ++ ...-.++.+. -+++..+.++. +..+..+.+-|-.-...+- +..+...+-..|
T Consensus 282 ~~y~r-~e~p~Rlp-ls-vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPR-HECPRRLP-LS-VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcc-cccchhcc-HH-HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 32111 00000000 00 0000112222 12222222221 2233333333322211111 111111111111
Q ss_pred ------CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-
Q 003273 559 ------LAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMP-M- 627 (834)
Q Consensus 559 ------~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 627 (834)
-.|. ..|+..+...+-+.|+++.|..+.+..+ +..|+ ++.|-.-..++...|.+++|..++++.. .
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 1344 3456667778999999999999999887 56676 5677777889999999999999999884 2
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------hHH--HHHHHHHhcCCchhHHHHHHHHH
Q 003273 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG--------SYT--LLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--------~~~--~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
.||..+=.--.....+.++.++|.+++.+...-+-+ .. .|. -=+.+|.++|+|.+|.+-+..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~-~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG-AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc-hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 245443333344456778899999998888776541 11 122 23556888899988877665553
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=6e-06 Score=90.11 Aligned_cols=260 Identities=14% Similarity=0.147 Sum_probs=173.2
Q ss_pred CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH-h-----cCChhHHHHHHHhhcccCCCCcCCc
Q 003273 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS-Q-----NGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 388 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~-~-----~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.....+.......|.+.|+.++|..+|..+...+|+...|-..+..+. . ....+...++|+++.. ..|..
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~----~yp~s 110 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE----KYPRS 110 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH----hCccc
Confidence 334445566777888888888888888888877787666655444443 1 2246677888888765 33544
Q ss_pred ccHHHHHHHHhhhhhH-HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----------------
Q 003273 462 FTLSCALMACARLAAL-RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---------------- 524 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---------------- 524 (834)
.....+.-.+.....+ ..+..+.....+.|+ |.+++.|-..|....+.+-...++....
T Consensus 111 ~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv----PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~ 186 (517)
T PF12569_consen 111 DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV----PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEE 186 (517)
T ss_pred cchhHhhcccCCHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccc
Confidence 4333332222221222 344445555555555 3566777777776555555555554432
Q ss_pred --CCChhHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-C
Q 003273 525 --QRNVVSW--TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-R 598 (834)
Q Consensus 525 --~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~ 598 (834)
.|....| .-+...|-..|++++|++++++.++ ..|+ ...|..-...+-+.|++++|.+.++..+ .+++ |
T Consensus 187 ~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~D 261 (517)
T PF12569_consen 187 KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLAD 261 (517)
T ss_pred cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhh
Confidence 1333345 5556678889999999999999999 6787 6778888889999999999999999886 4444 3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CC--C----HHHHHH--HHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPM---EP--T----PIIWVA--LLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
-..-+-.+.-+.|+|++++|.+.+..... .| | ...|-- ...+|.+.|+...|.+-+..+.+.
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44455667778899999999998876631 11 1 225543 444588999999999887777664
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=3.4e-06 Score=82.28 Aligned_cols=206 Identities=13% Similarity=0.051 Sum_probs=118.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH---hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHH-HH
Q 003273 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS---GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI-NA 396 (834)
Q Consensus 321 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 396 (834)
+...+...|++.+|+.-|...++ -|+..|.++.+ .|...|....|..-+..++. +.||.... ..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--------lKpDF~~ARiQ 111 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--------LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--------cCccHHHHHHH
Confidence 44556667778888888777765 34444444433 23444555555555555543 24443221 12
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
-...+.|.|.++.|..-|+.+...+|+..+- ..++.+.-..++-. .....+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~---~eaqskl~~~~e~~------------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLV---LEAQSKLALIQEHW------------------VLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchh---HHHHHHHHhHHHHH------------------HHHHHHHHHhcCCc
Confidence 3345666777777777777766444432211 11111111111111 12223334445566
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
...+..+...+++... .+...+..-..+|...|++..|..=++... ..+.....-+-..+-..|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6666666666666543 677777778888888888888876555443 45566666666677778888888888888
Q ss_pred HHHcCCCCCh
Q 003273 554 MRKEGLAPDG 563 (834)
Q Consensus 554 m~~~g~~p~~ 563 (834)
-++ +.||.
T Consensus 249 CLK--ldpdH 256 (504)
T KOG0624|consen 249 CLK--LDPDH 256 (504)
T ss_pred HHc--cCcch
Confidence 777 67774
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=5.9e-05 Score=82.49 Aligned_cols=297 Identities=11% Similarity=0.080 Sum_probs=148.5
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcch-HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCC
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVS-WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~ 255 (834)
...+...|++++|++.+++-... ++|..+ .......+.+.|+.++|..+|+.+... .|+...|-..+..|.....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhc
Confidence 44567789999999988774433 345444 555677888889999999999998854 6777777666655541110
Q ss_pred chhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh-hHH
Q 003273 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG-HEA 334 (834)
Q Consensus 256 ~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A 334 (834)
+ ....+.+....+|+++...- |...+...+.-.+.....+ ..+
T Consensus 87 -------~---------------------------~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~ 130 (517)
T PF12569_consen 87 -------Q---------------------------LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERL 130 (517)
T ss_pred -------c---------------------------cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHH
Confidence 0 01113344445555554432 1111111111111111112 233
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhc---C-----CCCCChh--hHHHHHHHHHHhC
Q 003273 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV---D-----GSHPDDL--MVINALIDMYAKC 404 (834)
Q Consensus 335 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~-----~~~~~~~--~~~~~li~~y~~~ 404 (834)
..++..+...|+++ +|+.+-..|...........+........... . ..-+|.. +++.-|...|-..
T Consensus 131 ~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 44455556666533 23333333332222222222222222211000 0 0122333 2334445556666
Q ss_pred CChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHH
Q 003273 405 KSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483 (834)
Q Consensus 405 g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 483 (834)
|++++|.+..++.....|+ +..|..-...|-+.|++.+|.+.++..+. +.+
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~------------------------ 259 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDL------------------------ 259 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CCh------------------------
Confidence 6666666666665544454 33455555556666666666666666544 222
Q ss_pred HHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hHHH--HHHHHHHHcCChHHHHHHH
Q 003273 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV----------VSWT--SLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~~~~A~~l~ 551 (834)
.|..+-+-.+..+.++|++++|.+++....+++. ..|- ....+|.+.|++..|+..|
T Consensus 260 -----------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 260 -----------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred -----------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555556666666666666666655553331 1232 2344566666666666655
Q ss_pred HHHH
Q 003273 552 DQMR 555 (834)
Q Consensus 552 ~~m~ 555 (834)
....
T Consensus 329 ~~v~ 332 (517)
T PF12569_consen 329 HAVL 332 (517)
T ss_pred HHHH
Confidence 5443
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=0.0002 Score=77.94 Aligned_cols=248 Identities=13% Similarity=0.091 Sum_probs=140.3
Q ss_pred HHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHc-C--------CCCCcccHHHHHHHHc
Q 003273 76 AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-G--------WHPDEYTFPFVLKACG 146 (834)
Q Consensus 76 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~t~~~ll~~~~ 146 (834)
.|..-|+.+.|.+-...+... ..|..|.+.+.+..+.+-|.-.+..|... | -.|+ .+=..+.-...
T Consensus 737 fyvtiG~MD~AfksI~~IkS~----~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD----SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh----HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 456678888887766555422 56999999998888888777766666421 1 1222 22222222234
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 003273 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 226 (834)
..|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.=.+-. =-.||.....-+-..++.+.|++.
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHH
Confidence 677888888888876653 234456777899999988876432221 113455566666677888888888
Q ss_pred HHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003273 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306 (834)
Q Consensus 227 ~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 306 (834)
|++-... .+...-+|.- ......+....+ +|...|.-....+-..|+++.|+.+|...
T Consensus 881 yEK~~~h------afev~rmL~e--------------~p~~~e~Yv~~~--~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 881 YEKAGVH------AFEVFRMLKE--------------YPKQIEQYVRRK--RDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHhcCCh------HHHHHHHHHh--------------ChHHHHHHHHhc--cchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 8765321 0001111110 111112222222 34445555555566677777777777665
Q ss_pred HhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHH
Q 003273 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376 (834)
Q Consensus 307 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 376 (834)
.. |-+++...|-.|+.++|-.+-++- -|....-.+.+.|-+.|++.+|..+|-.+
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 43 455555566666666666655542 23333334455555555555555554433
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.7e-06 Score=80.41 Aligned_cols=351 Identities=12% Similarity=0.073 Sum_probs=189.9
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHH-HHHHHHHh
Q 003273 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN-TIVAAYAQ 216 (834)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~li~~~~~ 216 (834)
|.+++..+.+..+...+.+++..-.+.. +.+....+.|...|....++..|-..++++....| ...-|. --...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHH
Confidence 4455555555555666666555544432 22444455566666666677777777766654322 111111 12344556
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC-CCChhHHHHHHHHHHcCCC
Q 003273 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKDVVSWNAMVTGYSRIGS 295 (834)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~~g~ 295 (834)
.+.+..|+++...|... |+-..-..-+.+...- ..+++..++.+.+..+ +.+..+.+...-...+.|+
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkY-------se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKY-------SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhc-------ccccCcchHHHHHhccCCCccchhccchheeecccc
Confidence 66677777777666432 2111111111111100 3455666667777766 4566666666667788999
Q ss_pred HHHHHHHHHHhHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH-HHHHHhhhhhchhhhhhHHH
Q 003273 296 FEDAFALFKKMRQE-NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL-VSLLSGCASVGALLLGKETH 373 (834)
Q Consensus 296 ~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~~~ 373 (834)
+++|.+-|+...+- |.. ....||..+ ++.+.|+++.|+++..++++.|++-.+..= .....+ .....+..-..+|
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHH
Confidence 99999999988765 444 566777655 456778999999999999988875322100 000000 0000000111111
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---CCccchHHHHHHHHhcCChhHHHHHHHhh
Q 003273 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---RDVATWTVMIGSYSQNGGANDALALFPQM 450 (834)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 450 (834)
...+ +..+|--...+.+.|+.+.|.+.+-.|+.+. .|++|...+.-.- ..+++-+..+-+.-+
T Consensus 237 ~Sal-------------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 237 QSAL-------------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred HHHH-------------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 1111 1123334455678899999999999998653 4677765543221 234455555545545
Q ss_pred cccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 451 FQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 451 ~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
+. +.| ...||..++-.|++..-++.|-.++..-...-+.-.++..|+.|-....-.-..++|.+-++.
T Consensus 303 L~----~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 303 LQ----QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred Hh----cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44 233 345888888888888888887777654332222213344444332222223345555554443
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=0.00069 Score=75.62 Aligned_cols=462 Identities=14% Similarity=0.108 Sum_probs=239.0
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHH----------HHHHHHHHHh---------
Q 003273 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG----------SSVHAVICSS--------- 164 (834)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a----------~~~~~~~~~~--------- 164 (834)
+-|..-.-+.++..--+..++.....|. .|..|++++.+.|..+.+-.+- +.+=....++
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEee
Confidence 3344444455566666667777777774 3777888888877665543321 1111111111
Q ss_pred --CCCCc---------hhHHHHHHHHHHhCCChhHH-----------HHHHHhcCCCCCC---CcchHHHHHHHHHhCCC
Q 003273 165 --GFDSN---------VFVCNALMAMYARCDTLSYA-----------RQLFDEMFQPGIC---DIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 165 --g~~~~---------~~~~~~Li~~~~~~g~~~~A-----------~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~ 219 (834)
| .-| ...+..+.+-+.+..+.+-= +++.|+..+.+.| |...-..-+.++...+-
T Consensus 921 erG-qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 921 ERG-QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ccc-CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 1 001 11222333333333333322 2344444444433 55566677889999999
Q ss_pred hhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC-------------Cchh------hhhcCcHHHHHHHHHhcCCCCh
Q 003273 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG-------------TWSR------GKQCGMMEEAKKVFERMKVKDV 280 (834)
Q Consensus 220 ~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~-------------~~~~------~~~~g~~~~A~~~~~~~~~~d~ 280 (834)
+.+-+++++++.-....-.....+-.++-.-+... +++. +...+.+++|..+|+.. ..+.
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-~~n~ 1078 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-DMNV 1078 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-cccH
Confidence 99999999998643122112222222211111000 0000 00334445555555442 1222
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhh
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 360 (834)
...+.||. .-+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|+..|..++..+
T Consensus 1079 ~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a 1143 (1666)
T KOG0985|consen 1079 SAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVA 1143 (1666)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHH
Confidence 22333332 2234455544444332 4456788888888888888887776543 4566677777777
Q ss_pred hhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCCh
Q 003273 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440 (834)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 440 (834)
.+.|.++.-...+..+.+. ..+| .+-+.||-+|++.+++.+-+++. . +||+.....+..-+...|.+
T Consensus 1144 ~~~~~~edLv~yL~MaRkk------~~E~--~id~eLi~AyAkt~rl~elE~fi---~--gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKK------VREP--YIDSELIFAYAKTNRLTELEEFI---A--GPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HhcCcHHHHHHHHHHHHHh------hcCc--cchHHHHHHHHHhchHHHHHHHh---c--CCCchhHHHHhHHHhhhhhh
Confidence 7777777777766666655 3333 23456777777777766655543 2 56666666666666666666
Q ss_pred hHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHH
Q 003273 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520 (834)
Q Consensus 441 ~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 520 (834)
+.|.-+|...-. |..+...+...|.+..|..--..+ .+..+|...-.++...+.+.-|.
T Consensus 1211 ~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--- 1269 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--- 1269 (1666)
T ss_pred HHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH---
Confidence 666655544321 334444444444444433322221 33444444444444433333221
Q ss_pred hhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 521 DNLKQRN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 521 ~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
|.--+ ..-..-++.-|-..|-+++.+.+++..+. +.-- .-.|+-|.-.|++ -.+++..+.++..-.+.++
T Consensus 1270 --iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNi 1344 (1666)
T KOG0985|consen 1270 --ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNI 1344 (1666)
T ss_pred --hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcch
Confidence 11111 11244567777788888888887776543 3332 2334444444444 2345444444433222232
Q ss_pred C------CChHHHHHHHHHHhhcCCHHHHHHHH
Q 003273 596 S------ARAEHYACIVDLLGRANRLDEAVELI 622 (834)
Q Consensus 596 ~------p~~~~~~~l~~~~~~~g~~~~A~~~~ 622 (834)
+ ....+|+-++-+|.+-..++.|.-..
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2 12567888888888888887765544
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=7e-06 Score=88.78 Aligned_cols=413 Identities=12% Similarity=0.117 Sum_probs=196.2
Q ss_pred CchhHHHHHHH--HHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHh
Q 003273 168 SNVFVCNALMA--MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245 (834)
Q Consensus 168 ~~~~~~~~Li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 245 (834)
-|..+..++++ .|..-|+.|.|.+-.+.+... ..|..|.+.+.+..+.+-|.-.+-.|....|.+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~-----~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-------- 790 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD-----SVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-------- 790 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh-----HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH--------
Confidence 46677777765 477889999999888877644 679999999999999999988888886431211
Q ss_pred HHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHH
Q 003273 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325 (834)
Q Consensus 246 ~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 325 (834)
.+-+....++ ..-....-.....|.+++|..+|++-... ..|=..|
T Consensus 791 ------------------------AlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKly 836 (1416)
T KOG3617|consen 791 ------------------------ALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLY 836 (1416)
T ss_pred ------------------------HHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHH
Confidence 0000001111 11111111122345555555555554432 2233344
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCC
Q 003273 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405 (834)
Q Consensus 326 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 405 (834)
...|.+++|+++-+.=-+-.++ .||..-..-+-..++.+.|.+.++..-.+ -..+...|. .
T Consensus 837 Qs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~h----------afev~rmL~------e 897 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVH----------AFEVFRMLK------E 897 (1416)
T ss_pred HhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCCh----------HHHHHHHHH------h
Confidence 4455555555544332111111 12222222222233333333333322111 001111110 0
Q ss_pred ChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 485 (834)
.+..-++..+.+. |...|.=-..-+-..|+.+.|+.+|..... |-++++..+-.|..++|-++-.
T Consensus 898 ~p~~~e~Yv~~~~----d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred ChHHHHHHHHhcc----chHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHHHHH
Confidence 1111111222222 222222222233345666666666665543 3344444455566666655544
Q ss_pred HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcC---------------ChHHHHHH
Q 003273 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG---------------LGDKAHWA 550 (834)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---------------~~~~A~~l 550 (834)
.- .+......|..+|-..|++.+|...|.+.. ++..-|..|-.++ +.-.|..+
T Consensus 963 es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 963 ES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred hc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 32 344455567777777777777777776653 2222222222221 11222333
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH---------HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY---------FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 551 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
|++. |.. +...+-.|-++|.+.+|+++ ++.+.++..-..|+...+.-.+.++...++++|..+
T Consensus 1031 yEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1031 YEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3321 111 11112234455555555543 333334333344566666667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CC---CCchHHHHHHHHHhcCCchhHHHHH
Q 003273 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE---SE---KDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 622 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+-... -+.--+..|... ++...++..+.+.--. |+ .......++..|.++|.|..|.+-|
T Consensus 1103 L~~ar------~~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1103 LCLAR------EFSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHH------HHHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 64432 223333334333 3444445544443221 11 1135667788888888887766654
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.8e-07 Score=97.73 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=155.0
Q ss_pred HHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
-+.+.|++.+|.-.|+....++| +...|--|......+++-..|+..+++.++ +.|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~----LdP~------------------ 351 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE----LDPT------------------ 351 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh----cCCc------------------
Confidence 35667778888888877766565 567777777777777777777777777766 5553
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 558 (834)
+..+.-+|.-.|...|.-.+|.+.++ .-+...
T Consensus 352 -----------------NleaLmaLAVSytNeg~q~~Al~~L~-------------------------------~Wi~~~ 383 (579)
T KOG1125|consen 352 -----------------NLEALMALAVSYTNEGLQNQALKMLD-------------------------------KWIRNK 383 (579)
T ss_pred -----------------cHHHHHHHHHHHhhhhhHHHHHHHHH-------------------------------HHHHhC
Confidence 22222333333444444444444444 333211
Q ss_pred CC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003273 559 LA--------PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP 629 (834)
Q Consensus 559 ~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 629 (834)
.+ ++..+-.. ..+.+...+....++|-.+....+..+|++++.+|.-+|--.|.++.|.+.|+.+ ..+|
T Consensus 384 p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 384 PKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred ccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 00 00000000 1122222344555666666655576788899999999999999999999999987 4456
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 630 -TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 630 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
|...||-|...+....+.++|+.+|.+++++.|.-..+.+.|+-.|...|.+.||.+.+=....
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5779999999999999999999999999999999999999999999999999999998866654
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=2.1e-06 Score=79.69 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=149.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHH
Q 003273 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507 (834)
Q Consensus 428 ~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 507 (834)
-.+.-+|.+.|+...|..-+++.++ ..| .+...+..+...|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~----~DP-----------------------------------s~~~a~~~~A~~Y 79 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALE----HDP-----------------------------------SYYLAHLVRAHYY 79 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----hCc-----------------------------------ccHHHHHHHHHHH
Confidence 3466788888888888888888877 444 4455667777888
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 003273 508 SRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 508 ~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+.|..+.|.+-|++.. ..+-...|....-+|.+|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|.
T Consensus 80 q~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 80 QKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 88888888888888776 34556777777788889999999999999887433333 678888888888899999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 584 KYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
.+|+...+ +.|+ ......+.+...+.|++.+|..+++... ..++..+..-.+..-...||...+-+.-.++...
T Consensus 160 ~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 160 EYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99988764 3343 4567778888899999999999888762 3366666666666677888888888777788888
Q ss_pred CCCCC
Q 003273 661 ESEKD 665 (834)
Q Consensus 661 ~p~~~ 665 (834)
.|...
T Consensus 237 fP~s~ 241 (250)
T COG3063 237 FPYSE 241 (250)
T ss_pred CCCcH
Confidence 88644
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00045 Score=72.21 Aligned_cols=458 Identities=12% Similarity=0.121 Sum_probs=244.4
Q ss_pred chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003273 99 SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178 (834)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 178 (834)
+..+|+.||+-+-.. ..+++.+.++++... ++..+..|..-+..-....+++....+|.+.+..- .+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 448899999877555 888999999998753 44455667777788788888998999998887764 34556666665
Q ss_pred HHHh-CCChhHHH----HHHHhcC-CCCC--CCcchHHHHHHH---------HHhCCChhHHHHHHHHhhhCCCCCCCcc
Q 003273 179 MYAR-CDTLSYAR----QLFDEMF-QPGI--CDIVSWNTIVAA---------YAQSGDAEGGLMLFARMTGDVKVQGDGV 241 (834)
Q Consensus 179 ~~~~-~g~~~~A~----~~~~~m~-~~~~--~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 241 (834)
---+ .|+...++ +.|+-.. +.|. ..-..|+..|.- |..+.+.+...++|+++...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-------- 166 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-------- 166 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC--------
Confidence 3322 33433322 2233221 1121 244456666543 33444566666677666543
Q ss_pred chHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC-CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHh--cCCCCCeeeH
Q 003273 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ--ENVKLNVVTW 318 (834)
Q Consensus 242 t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~ 318 (834)
-.+.+++-.+-|.... +-|..+-..++. -+...+..|.++++++.. +|...+..+
T Consensus 167 -------------------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~- 224 (656)
T KOG1914|consen 167 -------------------PMHNLEKLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPA- 224 (656)
T ss_pred -------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCC-
Confidence 2223333322222211 112222222221 133456777777777653 343322222
Q ss_pred HHHHHHHHhcCChhH--HHHHHHHHHH----CCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhh
Q 003273 319 SAVIAGYAQRGHGHE--ALDVFRQMQF----CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392 (834)
Q Consensus 319 ~~li~~~~~~g~~~~--A~~l~~~m~~----~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 392 (834)
.-..|-.++ +.+++....+ .++..-..+..+ ....-++++.+... ++.|++.
T Consensus 225 ------vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~-----------~Rv~yayeQ~ll~l-----~~~peiW 282 (656)
T KOG1914|consen 225 ------VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT-----------RRVMYAYEQCLLYL-----GYHPEIW 282 (656)
T ss_pred ------CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH-----------HHHHHHHHHHHHHH-----hcCHHHH
Confidence 001111111 1222222211 111100000000 00000111111100 2222222
Q ss_pred HHH-----HHHHHHHhCCChH-------HHHHHHHhcCCCC--CCccchHHHHHHH---HhcCChhHHHHHHHhhcccCC
Q 003273 393 VIN-----ALIDMYAKCKSVD-------VARVMFDAIAPKN--RDVATWTVMIGSY---SQNGGANDALALFPQMFQQDK 455 (834)
Q Consensus 393 ~~~-----~li~~y~~~g~~~-------~A~~~f~~~~~~~--~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~~~ 455 (834)
... ..-+.+...|+.. ++..+++...... .+..+|..+..-= ..-.+.+...+.+.+.+.. .
T Consensus 283 y~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~ 361 (656)
T KOG1914|consen 283 YDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-E 361 (656)
T ss_pred HHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-h
Confidence 111 1122344444433 3444444433100 1222222221100 1111345556666666541 2
Q ss_pred CCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hHHH
Q 003273 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNV-VSWT 532 (834)
Q Consensus 456 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~ 532 (834)
...|+ .+|...++..-+..-+..|+.+|..+.+.+..+.++.++++++..|+ .++.+-|.++|+.-.+ +|. ..-+
T Consensus 362 ~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~ 439 (656)
T KOG1914|consen 362 DIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVL 439 (656)
T ss_pred ccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHH
Confidence 23343 46777888888888899999999999988877458888899998777 4778888899886552 343 3445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHH
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG--ISARAEHYACIVDL 608 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~ 608 (834)
..+.-+...++-..|..+|++.+..++.|| ...|..+|.-=+.-|++..+.++-+.+...+. ..|...+-..+++.
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~R 519 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDR 519 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHH
Confidence 566667778888888889998888877776 46688888888888888888887776655444 44444445556666
Q ss_pred HhhcCCH
Q 003273 609 LGRANRL 615 (834)
Q Consensus 609 ~~~~g~~ 615 (834)
|+=.+..
T Consensus 520 Y~~~d~~ 526 (656)
T KOG1914|consen 520 YGILDLY 526 (656)
T ss_pred Hhhcccc
Confidence 6555543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.3e-05 Score=76.85 Aligned_cols=400 Identities=12% Similarity=0.051 Sum_probs=220.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccch--HhHHHH
Q 003273 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL--VNALSA 249 (834)
Q Consensus 172 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~--~~~l~a 249 (834)
-+++.+..+.+..++++|++++..-.++.+.+......|..+|....++..|-+.|.++... .|...-| -..-+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 35666777788889999999998887776667788899999999999999999999999754 3332222 111111
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCCC-ChhHHHHHH--HHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHH
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMV--TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-d~~~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 326 (834)
+ +.+.+.+|+++...|... +...-..-+ ......+++..+..+.++....| +..+.+...-...
T Consensus 89 Y----------~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 89 Y----------KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred H----------HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 1 455677777777766642 221111111 12335667777777777766432 4444444444555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCC
Q 003273 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406 (834)
Q Consensus 327 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 406 (834)
+.|++++|++-|+...+-| |+.|
T Consensus 156 kegqyEaAvqkFqaAlqvs----------------------------------------Gyqp----------------- 178 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVS----------------------------------------GYQP----------------- 178 (459)
T ss_pred ccccHHHHHHHHHHHHhhc----------------------------------------CCCc-----------------
Confidence 6677777777776665532 1111
Q ss_pred hHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCc-------------CCcccHHHHHHHHhh
Q 003273 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK-------------PNAFTLSCALMACAR 473 (834)
Q Consensus 407 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~-------------p~~~t~~~ll~a~~~ 473 (834)
...||.-+ +..+.|+++.|+++..++++ +|++ ||.....
T Consensus 179 -----------------llAYniAL-aHy~~~qyasALk~iSEIie--RG~r~HPElgIGm~tegiDvrsvg-------- 230 (459)
T KOG4340|consen 179 -----------------LLAYNLAL-AHYSSRQYASALKHISEIIE--RGIRQHPELGIGMTTEGIDVRSVG-------- 230 (459)
T ss_pred -----------------hhHHHHHH-HHHhhhhHHHHHHHHHHHHH--hhhhcCCccCccceeccCchhccc--------
Confidence 11122111 12223333333333333333 2221 1111100
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
....+|.. .-...+|.-...+.+.|+.+.|.+.+-.|+ +.|++|...+.-.- ..+++.+..
T Consensus 231 -----Nt~~lh~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 231 -----NTLVLHQS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred -----chHHHHHH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccH
Confidence 00011110 112233444455778899999999999998 34777766653222 245555566
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 003273 549 WAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI-SARAEHYACIVDLLGR-ANRLDEAVELIEGM 625 (834)
Q Consensus 549 ~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 625 (834)
+-++-+++ +.| ...||..++-.|++...++.|-.++.+-..- .. -.+...|+ +++++.- .-..++|.+-++..
T Consensus 297 ~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 297 EKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 66666666 455 3789999999999999999988887532210 00 01223333 4454443 34677777666554
Q ss_pred CCCCCHHHHHHHHHH--HHhcCc---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 626 PMEPTPIIWVALLNG--CRIHAN---VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 626 ~~~p~~~~~~~ll~~--~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...-....-..-+.. -+.+++ ...+.+-++..+++- -.+....+++|-+..++.-+.++|..-.+
T Consensus 373 a~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 373 AGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 211000011111111 112221 122333444444442 12456677888888899999988876554
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=2.2e-05 Score=84.30 Aligned_cols=300 Identities=11% Similarity=-0.053 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-Cccc---hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVAT---WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 390 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
....+..+...|...|+.+++.+.+.......+ +... .......+...|++++|.+++++..+ ..|+.....
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~ 80 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLAL 80 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHH
Confidence 344556666777777888887776666543332 2222 22223456778999999999999887 456544221
Q ss_pred HHHHHHhh----hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 003273 466 CALMACAR----LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGY 538 (834)
Q Consensus 466 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 538 (834)
.+...+.. .+....+.+.... .....+........+...+...|++++|...+++.. ..+...+..+...|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 11112222 3344444444433 112221334455566778999999999999999887 34566788888999
Q ss_pred HHcCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhc
Q 003273 539 GMHGLGDKAHWAFDQMRKEGL-APDG--VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY-A--CIVDLLGRA 612 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~l~~~~~~~ 612 (834)
...|++++|...+++...... .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 999999999999999887422 1232 235567788999999999999999875321111222111 1 233334444
Q ss_pred CCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHH
Q 003273 613 NRLDEAVEL---IEG---M-PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE---------KDGSYTLLSNIYA 676 (834)
Q Consensus 613 g~~~~A~~~---~~~---~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~ 676 (834)
|..+.+..+ ... . +.............++...|+.+.|...++.+....-. ........+.++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 533333322 211 1 11111222334555678889999999998887663211 2456678888899
Q ss_pred hcCCchhHHHHHHHHHhcC
Q 003273 677 NAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~~ 695 (834)
..|++++|.+.+......+
T Consensus 319 ~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 AEGNYATALELLGPVRDDL 337 (355)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.7e-05 Score=81.17 Aligned_cols=251 Identities=13% Similarity=0.072 Sum_probs=159.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhh
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~ 474 (834)
..|.++.-+..+++.|.+-++.......+..-++....+|...|.+.+....-....+ .|
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E--~g------------------ 287 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVE--VG------------------ 287 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHH--Hh------------------
Confidence 4456666667777777777777664443334445556667777777666655554443 11
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHGLGDKAHWAFD 552 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~ 552 (834)
.+...... .-......+...|.+.++++.|...|.+... ++... ..+....++++....
T Consensus 288 ------re~rad~k------lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 288 ------RELRADYK------LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAE 348 (539)
T ss_pred ------HHHHHHHH------HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHH
Confidence 11110000 0001112245578888999999999988652 22111 223344566666666
Q ss_pred HHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003273 553 QMRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT 630 (834)
Q Consensus 553 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 630 (834)
...- +.|.. .-.-.-...+.+.|++..|...|.++++. -+-|...|....-+|.+.|.+.+|++-.+.. ...|+
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 5554 55653 22333466788899999999999998863 2456788999999999999999988876655 33444
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 631 -PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 631 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
...|.--..++....+++.|.+.|+..++.+|++......+..++.....-+...++.
T Consensus 425 ~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 425 FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 3355555556667778999999999999999998888877777776543333333333
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=0.00086 Score=81.92 Aligned_cols=371 Identities=11% Similarity=0.005 Sum_probs=203.9
Q ss_pred HHHHHHhCCChhHHHHHHHhcCCCCCCCcch--HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhcc
Q 003273 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVS--WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253 (834)
Q Consensus 176 Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~ 253 (834)
....|...|++.+|.......... +... ...........|+++.+..++..+... ....+..........+.
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~-- 420 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQ-- 420 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHH--
Confidence 344456667777766665554332 1111 111223345567777777777666322 11111111111111122
Q ss_pred CCchhhhhcCcHHHHHHHHHhcC----CC----C----hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCe----ee
Q 003273 254 GTWSRGKQCGMMEEAKKVFERMK----VK----D----VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV----VT 317 (834)
Q Consensus 254 ~~~~~~~~~g~~~~A~~~~~~~~----~~----d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~ 317 (834)
..|++++|...+.... .. + ......+...+...|++++|...+++....-...+. ..
T Consensus 421 -------~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 421 -------SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred -------HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3455666655554331 11 1 112223344566899999999999987653111121 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--CHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCC-CChh
Q 003273 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLE---P--NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDL 391 (834)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 391 (834)
++.+...+...|++++|...+++.....-. + ...++..+...+...|+++.|...+.............. +...
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455666778899999999999888753111 1 122344455567788999999998888776532211111 1123
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCC----CC--CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPK----NR--DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
..+..+...+...|++++|...+++.... .+ ....+..+...+...|++++|.+.+.+... +.+......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~----~~~~~~~~~ 649 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN----LLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHhcccccH
Confidence 34555666777789999998888775421 11 122333445566677888888877777643 100000000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hHHHHHHHHH
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV-------VSWTSLMTGY 538 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~ 538 (834)
. ............+...|+.+.|...+.....+.. ..+..+..++
T Consensus 650 ~----------------------------~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 650 D----------------------------WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred h----------------------------HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 0 0000001112334557788888887766553221 1134455667
Q ss_pred HHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 539 GMHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888887653 22222 34455666677788888888888887764
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.7e-06 Score=90.66 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=167.9
Q ss_pred hhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCC
Q 003273 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGG 439 (834)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~ 439 (834)
.+.|++..|.-.++.+++ ..|.+...|.-|...-+..++-..|+..+.+..+.+| |....-+|...|...|.
T Consensus 296 m~nG~L~~A~LafEAAVk-------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVK-------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HhcCCchHHHHHHHHHHh-------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 355777777777887777 5688899999999999999999999999999887676 56778888889999999
Q ss_pred hhHHHHHHHhhcccCC---CCcC---CcccHHHHHHHHhhhhhHHHHHHHHHHH-HHhCCCccchhHHhHHHHHHHhcCC
Q 003273 440 ANDALALFPQMFQQDK---LVKP---NAFTLSCALMACARLAALRFGRQIHAYV-LRNQYEMLIPFVANCLIDMYSRSGD 512 (834)
Q Consensus 440 ~~~A~~l~~~m~~~~~---g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~li~~y~k~g~ 512 (834)
-.+|+..|+.-+...- ...+ +..+-.. ........+....++|-.+ ...+.. .++.++..|.-.|--.|+
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~-~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTK-IDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCC-CChhHHhhhHHHHhcchH
Confidence 9999999998865110 0000 1100000 1222333444444444444 445554 889999999999999999
Q ss_pred HHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 513 IDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 513 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
++.|.+.|+... +| |...||-|...++...+.++|+..|++.++ ++|+ ......|.-+|...|.+++|.+.|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999887 44 778999999999999999999999999999 8999 55666778889999999999998875
Q ss_pred hH
Q 003273 589 MS 590 (834)
Q Consensus 589 m~ 590 (834)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 54
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=3.2e-06 Score=85.94 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCC
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----HSGM 578 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 578 (834)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchh
Confidence 334566678888887777765 4455555566777778888888888888776 3344 22333333322 2335
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcH-HHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANV-ELGELAAN 655 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~ 655 (834)
+.+|..+|+++.. ...+++...+.+.-+....|++++|.+++++. ...| ++.++-.++..+...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6777777777654 23445555566666666666666666655553 2122 233444454444444544 44555555
Q ss_pred HHHhcCCC
Q 003273 656 RLLELESE 663 (834)
Q Consensus 656 ~~~~~~p~ 663 (834)
++....|+
T Consensus 261 qL~~~~p~ 268 (290)
T PF04733_consen 261 QLKQSNPN 268 (290)
T ss_dssp HCHHHTTT
T ss_pred HHHHhCCC
Confidence 55555554
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00012 Score=76.66 Aligned_cols=213 Identities=12% Similarity=-0.004 Sum_probs=134.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh----------HHHHHHH
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV----------SWTSLMT 536 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~----------~~~~li~ 536 (834)
+.++..+..+++.+.+-+....... .+...++....+|...|.+.+....-+...+..-. ....+..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3344444455556666555555543 34444555666666666666555544443321111 1122333
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE-HYACIVDLLGRANRL 615 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~ 615 (834)
+|.+.++++.|+..|++.+.....||.. .+....+++....+... -+.|... -.-.=...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 5555666777777777765544444322 12222333333333221 2334321 111226677889999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 616 DEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 616 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.+|+..+.++ ...| |...|.....+|.+.|++..|..-++..++++|+....|.--+-++....+|++|.+.+....+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 2334 5778888888899999999999999999999999999999999999999999999999988776
Q ss_pred c
Q 003273 694 T 694 (834)
Q Consensus 694 ~ 694 (834)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 4
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=0.00012 Score=78.49 Aligned_cols=64 Identities=14% Similarity=-0.098 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee---HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT---WSAVIAGYAQRGHGHEALDVFRQMQFC 344 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 344 (834)
...|..+...+...|+.+++...+......... +... .......+...|++++|.+++++..+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666677777776666665544221 2222 122233556678888888888877664
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=5.8e-06 Score=94.64 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=168.0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 566 (834)
.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...++|+++.+ +.-.-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence 5666777788888899999999999998872 1245799999999999999999999999988 33334558
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT---PIIWVALLNGCR 642 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~ 642 (834)
..|...|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-++|..++.++ ..-|. .....-....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999999877 56678999999999999999999999876 22232 334444444557
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
++||.+.|..+++-++.-.|.....|..++++-.+.|..+.++.+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999999887654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=2.6e-06 Score=77.16 Aligned_cols=122 Identities=9% Similarity=0.014 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003273 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-P 626 (834)
Q Consensus 549 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 626 (834)
.+|++.++ +.|+. +..+..++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45553 4445666777777777777777765 3334 4666777777777778888888777776 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 627 MEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 627 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 233 566788888888888888888888888888888888888777776543
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=7.9e-08 Score=61.72 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=26.0
Q ss_pred cCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 309 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
+|+.||.+|||+||.+|++.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677788888888888888888888888877773
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.2e-05 Score=80.54 Aligned_cols=180 Identities=12% Similarity=0.013 Sum_probs=109.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN-V---VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV---- 564 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 564 (834)
..+..+..+...|.+.|++++|...|+++. .|+ . ..|..+...+...|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 344455566666667777777777776654 222 1 2455566666677777777777777766 344311
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 003273 565 TFLVLLYACSHS--------GMVDQGLKYFDSMSKEFGISARAE-HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635 (834)
Q Consensus 565 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 635 (834)
++..+..++... |++++|.+.|+.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444444443 5566666666666532 23221 11111100 0000000 00112
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 636 ALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+...+...|+.+.|...++++++..|+++ .++..++.+|...|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445567888999999999999999977654 68899999999999999999999888654
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2e-07 Score=59.86 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHHhcC
Q 003273 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197 (834)
Q Consensus 165 g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 197 (834)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667788888888888888888888888887774
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.48 E-value=2.6e-06 Score=86.51 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~ 471 (834)
.+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...|. +..
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD~-~l~------ 167 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDEDS-ILT------ 167 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCCH-HHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcH-HHH------
Confidence 33334445566677777777766543 3445555667777778888888888877765 22222 111
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 003273 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 472 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
.+..+.+..+.-.+.+++|..+|+++.+ +++.+.|.+..++.+.|++++|.
T Consensus 168 --------------------------qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 168 --------------------------QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp --------------------------HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred --------------------------HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 1223344444444567888888887763 45667777777888888888888
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH-HHHHHHHHHhHH
Q 003273 549 WAFDQMRKEGLAPD-GVTFLVLLYACSHSGMV-DQGLKYFDSMSK 591 (834)
Q Consensus 549 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~ 591 (834)
+++.+..+ ..|+ +.|+..++.+....|+. +.+.+++..+..
T Consensus 222 ~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 222 ELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88888765 4454 67777777777777777 667777777764
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00044 Score=68.00 Aligned_cols=381 Identities=13% Similarity=0.059 Sum_probs=218.5
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHH
Q 003273 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248 (834)
Q Consensus 169 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~ 248 (834)
++.-.--|...+...|++.+|+.-|....+.++.+-.++.--...|...|+..-|+.=+.+.. ..+||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~------ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMA------ 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHH------
Confidence 333344566677778999999999999888833333333334567888888888887777776 34555221
Q ss_pred HhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc
Q 003273 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328 (834)
Q Consensus 249 a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 328 (834)
+-. --...+.+.|.+++|..=|+...+..+. . +....++.+.
T Consensus 108 ARi---------------------------------QRg~vllK~Gele~A~~DF~~vl~~~~s--~---~~~~eaqskl 149 (504)
T KOG0624|consen 108 ARI---------------------------------QRGVVLLKQGELEQAEADFDQVLQHEPS--N---GLVLEAQSKL 149 (504)
T ss_pred HHH---------------------------------HhchhhhhcccHHHHHHHHHHHHhcCCC--c---chhHHHHHHH
Confidence 100 0112345667777777777776665321 1 1111111111
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChH
Q 003273 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408 (834)
Q Consensus 329 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 408 (834)
-..++-.. ....+..+...|+...+......+++ -.+-|...+..-..+|...|.+.
T Consensus 150 ~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llE-------i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 150 ALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLE-------IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHh-------cCcchhHHHHHHHHHHHhcCcHH
Confidence 11111111 11222223334455555555555444 45667778888888999999999
Q ss_pred HHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 487 (834)
.|+.-++...... .++.+.-.+-..+...|+.+.++...++.++ +.||....-.. | ..+......+..+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~---Y---KklkKv~K~les~ 276 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPF---Y---KKLKKVVKSLESA 276 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHH---H---HHHHHHHHHHHHH
Confidence 9988777765433 4566677777788889999999999999887 77876432110 1 1111111111111
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC--hh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN--VV---SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~--~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 560 (834)
......+++.++.+..+... +|. .+ .+..+-.++...|++.+|++...+.++ +.
T Consensus 277 -----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d 337 (504)
T KOG0624|consen 277 -----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--ID 337 (504)
T ss_pred -----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cC
Confidence 11223455555555555544 232 22 233445566778889999999999888 77
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003273 561 PD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639 (834)
Q Consensus 561 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 639 (834)
|| ..++.--..||.-...++.|++-|+...+ ..++-.- .|.| ++.|..+-+... +.| |.-+++
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n~sn~~--------~reG-le~Akrlkkqs~-kRD---YYKILG 401 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LNESNTR--------AREG-LERAKRLKKQSG-KRD---YYKILG 401 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcccHH--------HHHH-HHHHHHHHHHhc-cch---HHHHhh
Confidence 87 77788888888888889999998888763 3333211 1111 345555554443 223 223333
Q ss_pred HHHhcCcHHHHHHHHHHHH-hcCCCCC
Q 003273 640 GCRIHANVELGELAANRLL-ELESEKD 665 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~-~~~p~~~ 665 (834)
.- ++.+-.+-.++|+++- +-+|+|.
T Consensus 402 Vk-RnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 402 VK-RNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred hc-ccccHHHHHHHHHHHHHhcCCccc
Confidence 33 3333445566666654 4578764
No 113
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=3.3e-05 Score=79.60 Aligned_cols=204 Identities=12% Similarity=0.091 Sum_probs=133.7
Q ss_pred HHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC
Q 003273 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511 (834)
Q Consensus 432 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 511 (834)
..+...++.++|+.+..++++ +.|+..| +++.-..++.+.|
T Consensus 45 a~l~~~e~serAL~lt~~aI~----lnP~~yt-----------------------------------aW~~R~~iL~~L~ 85 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR----LNPGNYT-----------------------------------VWHFRRLCLEALD 85 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH----HCchhHH-----------------------------------HHHHHHHHHHHcc
Confidence 334556677788888887776 5565443 2233333333445
Q ss_pred -CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 003273 512 -DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG--DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 512 -~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
++++++..++++. .++...|+.....+.+.|+. ++++.+++++++ ..|. ..+|.....++.+.|+++++++
T Consensus 86 ~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 86 ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 4677777776665 33555676655555555553 567888888877 5564 6777777777778888888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CcHHHHH
Q 003273 585 YFDSMSKEFGISARAEHYACIVDLLGRA---NR----LDEAVELIEGM-PMEP-TPIIWVALLNGCRIH----ANVELGE 651 (834)
Q Consensus 585 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~ 651 (834)
.++.+++. -.-+...|+....++.+. |. .++++++..++ ...| |...|+-+.+.+... ++...+.
T Consensus 164 ~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 88888753 122344555555554443 22 24566666444 3344 577899888888774 3446688
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 652 LAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..+.++++.+|+++.+...|+++|+..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 889999999999999999999999864
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00038 Score=84.95 Aligned_cols=377 Identities=10% Similarity=-0.015 Sum_probs=191.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 363 (834)
......|...|++.+|............ -..............|+++.+...+..+.......+..........+...
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 3444456666676666654444321100 00001111223445666666666665542111111111122222233455
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC--C----ccchHHHHHHHH
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPD--DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR--D----VATWTVMIGSYS 435 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~----~~~~~~li~~~~ 435 (834)
|+.+.+......+.......+...++ .......+...+...|++++|...+++.....+ + ...++.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 66666666666554431110000011 112222334556678888888888877543111 1 123445555666
Q ss_pred hcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHH
Q 003273 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 515 (834)
..|++++|...+.+... ..-.. |...........+...+...|++++
T Consensus 503 ~~G~~~~A~~~~~~al~--~~~~~-------------------------------g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 503 CKGELARALAMMQQTEQ--MARQH-------------------------------DVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred HcCCHHHHHHHHHHHHH--HHhhh-------------------------------cchHHHHHHHHHHHHHHHHCCCHHH
Confidence 77888888887777654 10000 0000111223344555566666666
Q ss_pred HHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC--hhHHHHHHHHHHhcCCHH
Q 003273 516 ARVVFDNLKQ-------R----NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG--LAPD--GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 516 A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~ 580 (834)
|...+++... + ....+..+...+...|++++|...+++..... ..|. ..++..+.......|+++
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 629 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD 629 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence 6666554431 1 11223344445556678888877777765421 1122 233444555666778888
Q ss_pred HHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCcHHH
Q 003273 581 QGLKYFDSMSKEFGISARAEHY-----ACIVDLLGRANRLDEAVELIEGMPME--PTP----IIWVALLNGCRIHANVEL 649 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~ 649 (834)
+|...++.+..-.........+ ......+...|+.++|.+++...... ... ..+..+..++...|+.++
T Consensus 630 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 630 NARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 8887777664321111111111 11123445578888888887665311 111 113345555677788888
Q ss_pred HHHHHHHHHhcCC------CCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 650 GELAANRLLELES------EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 650 a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
|...++++++... +...++..++.+|...|+.++|...+.+..+..
T Consensus 710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888776521 122466778888888888888888888877643
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=7.1e-06 Score=72.76 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
+.+..-.+...+...|++++|.++|+-. ...| +..-|..|...|...|+++.|+.+|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666777788899999999999877 3344 5678999999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 003273 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~ 739 (834)
...|+.+.|++-|+...... ..+|+-.++..+.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999887532 146777777666666655553
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=1.2e-05 Score=86.58 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=176.3
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
.++|-...-..+...+.++|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.+ -+||..-|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le----k~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE----KDPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc----CCCcchhHH
Confidence 566777777889999999999999999999875 688899999999999999999988876 578888898
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHG 542 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 542 (834)
.+.+..-+..-++.|.++.++.... ....+.......++++++.+.|+.-.+ --..+|-....+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 8888888888888888887765432 112222223346889999999987653 24568888888889999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 543 LGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 543 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
+++.|.+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|++.
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 99999999999888 7888 67799999999999999999999998875 34 44555677777778889999999999
Q ss_pred HHhC
Q 003273 622 IEGM 625 (834)
Q Consensus 622 ~~~~ 625 (834)
+.++
T Consensus 610 ~~rl 613 (777)
T KOG1128|consen 610 YHRL 613 (777)
T ss_pred HHHH
Confidence 8877
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=1.2e-05 Score=72.92 Aligned_cols=100 Identities=8% Similarity=-0.107 Sum_probs=88.3
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHH
Q 003273 594 GISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671 (834)
Q Consensus 594 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 671 (834)
.+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|+++.|...++++++++|+++.++..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34455 3667888999999999999999987 3334 677999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcC
Q 003273 672 SNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+.+|...|++++|...++...+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987643
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.36 E-value=2.3e-05 Score=75.17 Aligned_cols=118 Identities=10% Similarity=0.089 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCc--HHHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNG-CRIHAN--VELG 650 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 650 (834)
.++.+++...++...+ .-+.+.+.|..+...|...|++++|...+++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666665543 23345667777777777777777777777766 2334 46677777766 356666 5899
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.++++++++.+|+++.++..|+..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987653
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=3e-05 Score=83.69 Aligned_cols=186 Identities=18% Similarity=0.175 Sum_probs=153.6
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
+-......+.+.+.++|-..+|..+|++. ..|...|-+|...|+..+|..+..+-.+ -+||+.-|..++...-
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 55556677889999999999999999875 5788889999999999999999998887 5788999999999988
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGEL 652 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 652 (834)
....+++|+++++....+ .-..+.....+.++++++.+.++.. .+.| ...+|-.+..+..+.++.+.|.+
T Consensus 469 d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 888899999998865432 1112223334578999999988764 4444 35688888888888899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 653 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+|.+...++|++...+++++-+|.+.|+..+|...+++..+-.
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999998887654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=0.00026 Score=81.25 Aligned_cols=244 Identities=12% Similarity=0.062 Sum_probs=165.3
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc-chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
-.+.+...+..|+..|...+++++|.++.+......|+.. .|-.+...|.+.++.+++..+ .+.. ..++..-+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~----~~~~~~~~ 99 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID----SFSQNLKW 99 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh----hcccccch
Confidence 3456777889999999999999999999998776667544 444445567777777777666 4432 22322222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMH 541 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 541 (834)
..+-.. ...+...+ .+..++..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+..
T Consensus 100 ~~ve~~-------------~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 100 AIVEHI-------------CDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hHHHHH-------------HHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 222222 22333322 4445667788888888999999888888873 4677788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
+.++|.+++.+.+.. +...+++.++.++|..+.. ...-+.+.+..+.......
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~--------- 216 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH--------- 216 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh---------
Confidence 888888888887763 5556678888888888763 2222333333332222111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 622 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.....-..+|--|-..|...++++.+..+++.+++.+|.|..+..-++..|. +++.+
T Consensus 217 ---~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 217 ---REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred ---hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 1122334456666677888889999999999999999999988888888887 55554
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=8.8e-05 Score=84.39 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=108.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 003273 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYA 603 (834)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 603 (834)
.++..+-.|.....+.|..++|..+++...+ +.|| ......+..++.+.+++++|....+.... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3466777778888888999999999999888 7887 56677788888889999999988888763 344 466777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 604 CIVDLLGRANRLDEAVELIEGMP-MEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
.+..++.+.|++++|.++|++.- ..|+ ...|.++..++...|+.+.|..+|+++++...+-...|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 88888888999999999998873 2344 67888888888888999999999999888865444443
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=8.1e-05 Score=74.45 Aligned_cols=182 Identities=14% Similarity=-0.010 Sum_probs=126.7
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc-cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC-hh---HHHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEM-LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN-VV---SWTS 533 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~---~~~~ 533 (834)
...+......+...|+++.|...+..+.+..... .....+..+...|.+.|++++|...|+++. .|+ .. .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456666777888999999999999998865421 122466788899999999999999999987 232 22 4555
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 534 LMTGYGMH--------GLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 534 li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
+..++.+. |+.++|.+.|+++.+ ..|+.. ....+..... ... .. ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHHH
Confidence 66666654 788999999999998 567643 2222211100 000 00 011235
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 605 IVDLLGRANRLDEAVELIEGM----PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 677788999999999988876 2223 2468888899999999999999988888776653
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.24 E-value=0.00017 Score=83.23 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~ 471 (834)
.+|.+++++-...|.-+...++|+++.+.......|..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHH
Confidence 35666666666666666677777776532223445666777777777777777777777752 333445566666666
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHH
Q 003273 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 472 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
.+...-+.|+.++..+.+.-.......+..-.+.+-.++|+.+.++.+|+... .+-...|+..|..-.++|+.+.+.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHH
Confidence 66666677777777766644322345566677788889999999999999887 235678999999999999999999
Q ss_pred HHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCH
Q 003273 549 WAFDQMRKEGLAPD--GVTFLVLLYACSHSGMV 579 (834)
Q Consensus 549 ~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~ 579 (834)
.+|++.+..++.|- ...|.-.|.--...|+-
T Consensus 1655 ~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999988885 34455555444444443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00068 Score=70.50 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhc
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMF 451 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 451 (834)
..|.|++......+.+.+.++..+|.+.|+.+....|+ ...+-.+..+|.+.|++.+|+.+++...
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 34444555555555555556666665555555544443 3344444555555555555555555544
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=8.6e-05 Score=70.80 Aligned_cols=126 Identities=16% Similarity=0.048 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIH 644 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 644 (834)
..+-.++...|+-+....+...... ....+.......+....+.|++.+|...+.+. +.++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4455556666666666666555432 22333444555667777777777777777766 3345666777777777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|+.+.|...|.+++++.|+++.+++.|+..|.-.|+.++|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777666543
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.00013 Score=69.90 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=114.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 582 (834)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++.++ ..|+ ...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888877655544332221 012235667888888888888 5665 77788888999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 583 LKYFDSMSKEFGISA-RAEHYACIVDLL-GRANR--LDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 583 ~~~~~~m~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998873 445 577788888864 67777 59999999988 3344 567888888889999999999999999
Q ss_pred HHhcCCCCCchH
Q 003273 657 LLELESEKDGSY 668 (834)
Q Consensus 657 ~~~~~p~~~~~~ 668 (834)
++++.|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999988765444
No 127
>PLN02789 farnesyltranstransferase
Probab=98.18 E-value=0.00044 Score=71.41 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-ChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCCh--hHHHH
Q 003273 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA--EGGLM 225 (834)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A~~ 225 (834)
+..+.|..+.+.+++.. +.+..+|+..-.++.+.| ++++++..++++...++.+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 44556666666666543 333445555555555556 467777777777666555666677655555544442 34455
Q ss_pred HHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHH
Q 003273 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305 (834)
Q Consensus 226 ~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 305 (834)
+++++.+. ...|..+|+.....+.+.|+++++++.+++
T Consensus 130 ~~~kal~~------------------------------------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 130 FTRKILSL------------------------------------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HHHHHHHh------------------------------------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55444422 135677788888888888888999999999
Q ss_pred hHhcCCCCCeeeHHHHHHHHHhc
Q 003273 306 MRQENVKLNVVTWSAVIAGYAQR 328 (834)
Q Consensus 306 m~~~g~~p~~~~~~~li~~~~~~ 328 (834)
+.+.++. |..+|+.....+.+.
T Consensus 168 ~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 168 LLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHCCC-chhHHHHHHHHHHhc
Confidence 8888777 777787776655443
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00021 Score=68.30 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=82.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 613 (834)
-..+...|+.+..+.+..+... ..| |......++......|++.+|...+.+... .-++|.+.|+.+.-+|.+.|
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 3444445555555544444332 122 222333345555555555555555555542 33445555555555555555
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 614 RLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 614 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
++++|..-|.+. ...| ++...++|...+...||.+.|+..+.......+.|+.+-..|+-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555444 2222 34556666666666666666666666666666666666666666666677766666553
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00033 Score=72.72 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=53.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGEL 652 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 652 (834)
..|.+++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555554442 22233334444445555555555555555444 22333 3344444444555555555555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 653 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.+...+.-+|+|+..|..|+.+|...|+..++...+.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 5555555555555555555555554444444444433
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=8.9e-06 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 563 (834)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=9e-06 Score=53.12 Aligned_cols=33 Identities=36% Similarity=0.719 Sum_probs=22.1
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 349 (834)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.00 E-value=0.00034 Score=79.69 Aligned_cols=141 Identities=10% Similarity=0.057 Sum_probs=111.6
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 570 (834)
.++..+-.|.......|++++|+.+++... .|| ...+..+...+.+.+++++|+..+++... ..|+. .....+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 557777888888889999999999999887 454 55777888899999999999999999998 67874 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLN 639 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 639 (834)
.++.+.|++++|..+|+++.. ...-+...+..+..++.+.|+.++|...|++. ...|....|+.++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 688899999999999999875 22334678888999999999999999999887 23355555555543
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=7.8e-05 Score=67.09 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
......++..+...|++++|.+.++.. ...| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777777777777777765 2233 56677777778888888888888888888888888888888999999
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999888877664
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0012 Score=75.99 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=83.1
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 278 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+...|..|+..|...+++++|.++.+...+..+. ....|-.+...+.+.++..++..+ .+... .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~------- 96 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDS--FSQN------- 96 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccc-------
Confidence 46778999999999999999999999977766443 445555555677788877766655 33221 1111
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHh
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQ 436 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~ 436 (834)
.++.....+...+. ....+......|..+|-+.|+.++|..+++++....| |+...|.+...|..
T Consensus 97 ------~~~~~ve~~~~~i~--------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 97 ------LKWAIVEHICDKIL--------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred ------cchhHHHHHHHHHH--------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 11111111111111 1122233445555555555666666666655554443 44555555555555
Q ss_pred cCChhHHHHHHHhhcc
Q 003273 437 NGGANDALALFPQMFQ 452 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~ 452 (834)
. +.++|++++.+...
T Consensus 163 ~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 163 E-DKEKAITYLKKAIY 177 (906)
T ss_pred h-hHHHHHHHHHHHHH
Confidence 5 55555555555544
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.005 Score=58.99 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCCH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----HSGMV 579 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~ 579 (834)
...|.+.|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|.+ + -+..|.+.|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 34566666666666666653222222222 2233445556666666666665 1 23444444444433 23445
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-cHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHA-NVELGELAANR 656 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 656 (834)
.+|.-+|++|.+ ...|+..+.+.+..+....|++++|..++++.- ...++.+...++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666643 244555555555555555555555555555441 1122333333333322222 33333444444
Q ss_pred HHhcCCC
Q 003273 657 LLELESE 663 (834)
Q Consensus 657 ~~~~~p~ 663 (834)
+...+|+
T Consensus 268 Lk~~~p~ 274 (299)
T KOG3081|consen 268 LKLSHPE 274 (299)
T ss_pred HHhcCCc
Confidence 5555554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00025 Score=63.77 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM 627 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 627 (834)
.+++.+. ..|+ ......+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 5565 344566666778888888888888887642 2335677788888888888888888888776 23
Q ss_pred CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 628 EP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 628 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 4667777888888899999999999999999997655
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.004 Score=59.15 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=119.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC--CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQ--RN---VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
+..++-+...+|+.+.|...++.+.. |. +.-..+| -+-..|++++|+++++..++.. +.|.+++--=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 34445555567888888888777652 22 2222222 2445789999999999999853 335777777676777
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---cHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA---NVEL 649 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~ 649 (834)
..|..-+|++-+....+ .+.-|.+.|.-+.++|...|+++.|.-.++++ -..| ++..+..+...+...| |.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888888888876 56678889999999999999999999999988 2334 4556666666644443 7889
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 003273 650 GELAANRLLELESEKDGSYT 669 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~ 669 (834)
+.+.|++.+++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 99999999999997655443
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.3e-05 Score=49.97 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 561 (834)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00029 Score=74.09 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH 644 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 644 (834)
.+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 44555566677777777777777643 244 3444666676777777777777666 2223 555666666668899
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++.+.|..+++++.++.|++..+|..|+.+|...|++++|....+.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999888764
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.82 E-value=2.6e-05 Score=50.45 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=17.6
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003273 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 348 (834)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555544
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.0013 Score=69.33 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=104.8
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS 574 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 574 (834)
+-.+..+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++ ..|+ ...+..-...|.
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLL 245 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3344456777777889999999999999976666667788888888999999999999997 4554 555555566688
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMPMEP 629 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 629 (834)
..++++.|+++.+++. .+.|+ ..+|..|+.+|.+.|++++|+..++.+|..+
T Consensus 246 ~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 246 SKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred hcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999987 45665 5699999999999999999999999998543
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00029 Score=71.18 Aligned_cols=267 Identities=11% Similarity=-0.017 Sum_probs=153.2
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc-ccHHHHHHHHhhhh
Q 003273 398 IDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA-FTLSCALMACARLA 475 (834)
Q Consensus 398 i~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-~t~~~ll~a~~~~~ 475 (834)
...+.+...+.+|...+.......|| ..-|..-...|...|++++|+--.++-++ ++|.. .+..-.-+.+...+
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r----~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR----LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee----cCCCccccccchhhhhhhhH
Confidence 34556666777777777776655564 45567777778888888888877776655 33322 23333334444444
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHH-HHHHHcCChHHHHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLM-TGYGMHGLGDKAHW 549 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li-~~~~~~g~~~~A~~ 549 (834)
+..++.+.+..-. + + ....|+..++... +|-..+|..+- .++.-.|+.++|..
T Consensus 132 ~~i~A~~~~~~~~--------~--~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ--------A--Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHhhhhh--------h--h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 4444444433100 0 0 0111111111111 12233343332 23445566666665
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH-------------HHHHHHHHHhhcCCH
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE-------------HYACIVDLLGRANRL 615 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------------~~~~l~~~~~~~g~~ 615 (834)
.--..++ ..++ ......-..++...++.+.|...|++.. .+.|+.. .+.-=.+...+.|++
T Consensus 191 ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 5555544 2222 2211111223444555666666665543 3344321 122223456678888
Q ss_pred HHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 616 DEAVELIEGM-PME-----PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 616 ~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.+|.+.+.+. .+. |++..|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++...++|++|.+-++
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776 333 4455666666667788888889988889999988878888888888888899999888887
Q ss_pred HHHhc
Q 003273 690 LMKHT 694 (834)
Q Consensus 690 ~m~~~ 694 (834)
...+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 77654
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.75 E-value=0.13 Score=57.91 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=37.4
Q ss_pred HHHcCCCHHHHHHHHH-HhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003273 289 GYSRIGSFEDAFALFK-KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345 (834)
Q Consensus 289 ~~~~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 345 (834)
.+-..|++++|++++. ..-+.-..-+...-|--+..+...+++.+..++-.++...|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3456778888888883 33333222234444456677777888888888888887766
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.16 Score=57.33 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCCchHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 003273 148 LPSSRCGSSVHAVICSSGFDSNV---FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224 (834)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 224 (834)
.+++..|.+..+.+.+. .|+. .++.+|. ..|.|+.++|..+++.....+..|..|...+-..|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34566666666666554 2332 2233332 357788888888888776665558888888888888888888888
Q ss_pred HHHHHhhhCCCCCCCccchHhHHHHhhc
Q 003273 225 MLFARMTGDVKVQGDGVSLVNALSACAS 252 (834)
Q Consensus 225 ~~~~~m~~~~~~~p~~~t~~~~l~a~~~ 252 (834)
.+|++.. +..|+......++.++.+
T Consensus 98 ~~Ye~~~---~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 98 HLYERAN---QKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHH---hhCCcHHHHHHHHHHHHH
Confidence 8888887 445665555666666653
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0025 Score=60.52 Aligned_cols=181 Identities=11% Similarity=0.114 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHhhcC--------CCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHhcCCH
Q 003273 510 SGDIDTARVVFDNLK--------QRNVV-SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY-ACSHSGMV 579 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~ 579 (834)
..+.++..+++..+. .++.. .|..++-+....|+.+.|...++++... + |.+.-...+=. -+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 357888888888776 23333 3455566667789999999999999885 3 66433222222 25567899
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|.++++.+.++ -+.|..++---+.++-..|+--+|++-+... .+..|...|.-|-..|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999864 2445666666677777788877888766654 24468899999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCC---chhHHHHHHHHHhc
Q 003273 658 LELESEKDGSYTLLSNIYANAGR---WKDVARIRSLMKHT 694 (834)
Q Consensus 658 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 694 (834)
+=+.|-++..+..|+.++.-.|- .+-|++++.+..+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887775 44566677666554
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.68 E-value=0.11 Score=55.08 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
+|-..++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ .+++.+-|.++|+.=.+++|-.| .--.+.++.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHH
Confidence 56666776667777889999999999988888 455566666544 46788999999998777655444 445678889
Q ss_pred HhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcC
Q 003273 609 LGRANRLDEAVELIEGMP---MEPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKD----GSYTLLSNIYANAG 679 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 679 (834)
+...++=..|..+|++.. ..|+ ..+|..+|..-..-||.+...++-++....-|.+. ..-..+.+.|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 999999999999999873 2333 46999999999999999999998888777655221 23456778888888
Q ss_pred CchhHHHHHHHH
Q 003273 680 RWKDVARIRSLM 691 (834)
Q Consensus 680 ~~~~a~~~~~~m 691 (834)
.+..-..-++.|
T Consensus 525 ~~~c~~~elk~l 536 (656)
T KOG1914|consen 525 LYPCSLDELKFL 536 (656)
T ss_pred cccccHHHHHhh
Confidence 887665555555
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.00042 Score=57.33 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 679 (834)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|+.+.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877765 2233 34567777777788888888888888888888888888888888888889
Q ss_pred CchhHHHHHHHHHh
Q 003273 680 RWKDVARIRSLMKH 693 (834)
Q Consensus 680 ~~~~a~~~~~~m~~ 693 (834)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 98888888877654
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00015 Score=56.16 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CchhHHHHHHHHHhc
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG-RWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 694 (834)
++.+|..+...+...|+++.|+..++++++++|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999 799999999887653
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.002 Score=58.55 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=56.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCC
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPDG----VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDLLGRANR 614 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~ 614 (834)
.++...+...++++... .|+. .....+...+...|++++|...|+..... ...|.. ...-.+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555553 2221 22223334455566666666666655542 212211 123334555556666
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 615 LDEAVELIEGMPME-PTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 615 ~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
+++|+..++..+.. .....+..+...+...|+.+.|...|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666666554311 22334444555566666666666666554
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=8.4e-05 Score=46.82 Aligned_cols=29 Identities=41% Similarity=0.736 Sum_probs=14.9
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCG 345 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 345 (834)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00051 Score=66.99 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 649 (834)
..+.+++++|+..|...+ .+.|+ ...|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|.-++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666555 34443 334444555666666666666666554 34454 3478888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
|+++|+++++++|++......|-.+=
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 88888888888888775555554443
No 152
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.12 Score=52.59 Aligned_cols=275 Identities=17% Similarity=0.177 Sum_probs=182.0
Q ss_pred hCCChHHHHHHHHhcCCC-CCCccchHHHHHHH--HhcCChhHHHHHHHhhcccCCCCcCCc--ccHHHHHHHHhhhhhH
Q 003273 403 KCKSVDVARVMFDAIAPK-NRDVATWTVMIGSY--SQNGGANDALALFPQMFQQDKLVKPNA--FTLSCALMACARLAAL 477 (834)
Q Consensus 403 ~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~g~~p~~--~t~~~ll~a~~~~~~~ 477 (834)
-.|+-..|+++-.+..+. ..|....-.++.+- .-.|++++|.+-|+.|.. .|.. .-+..+.-..-+.|+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 346667777666554311 23433333344332 346899999999999986 2322 1223333344567888
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHHH---cCChHHH
Q 003273 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVV--SWTSLMTGYGM---HGLGDKA 547 (834)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A 547 (834)
+.++++-...-..-. .-+....+.++..+..|+++.|+++.+.-. ++++. .-..|+.+-+. .-+...|
T Consensus 171 eaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 888888777655433 556778899999999999999999998665 45543 23334433221 2346667
Q ss_pred HHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--H--HHH
Q 003273 548 HWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA--V--ELI 622 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~--~~~ 622 (834)
...-.+..+ +.||- ..-.....++.+.|++.++-.+++.+- ...|.+..+... .+.|.|+.... . +-+
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLY--VRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHH--HHhcCCCcHHHHHHHHHHH
Confidence 766666666 78884 445556678999999999999999886 456776655433 34455543221 1 122
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHh
Q 003273 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA-GRWKDVARIRSLMKH 693 (834)
Q Consensus 623 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 693 (834)
+.|. +.+..+..++..+-...|++..|....+.+..+.|. ...|.+|+++-... |+-.+++....+..+
T Consensus 322 ~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3343 234556777777888899999999999999999995 78899999987655 888888777766554
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.57 E-value=0.0038 Score=56.72 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
.+...|++++|...|+........|+ ......+...+...|++++|+..++... +-......+....++|.+.|+
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---DEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHCCC
Confidence 34444555555555555544331111 1223333444444555555555543321 111222334444455555555
Q ss_pred HHHHHHHHH
Q 003273 615 LDEAVELIE 623 (834)
Q Consensus 615 ~~~A~~~~~ 623 (834)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=9.1e-05 Score=60.03 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 613 NRLDEAVELIEGM-PMEP---TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
|++++|+.+++++ ...| +...|..+..++...|+.+.|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555554 1112 344555566667777777777777777 6666666666667788888888888888777
Q ss_pred HH
Q 003273 689 SL 690 (834)
Q Consensus 689 ~~ 690 (834)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.00087 Score=70.97 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=41.1
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 610 GRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
.+.|++++|++.|+++ ...| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443 1122 2334444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHh
Q 003273 688 RSLMKH 693 (834)
Q Consensus 688 ~~~m~~ 693 (834)
++...+
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 554443
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=9.1e-05 Score=46.65 Aligned_cols=31 Identities=39% Similarity=0.676 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 559 (834)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.14 Score=52.89 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=96.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 580 (834)
+..+.-+...|+...|.++-.+..-||-..|-..+.+++..+++++-..+... +-.++-|...+.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566789999999999999889999999999999999999887765432 234588999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
+|..+...+. +..-+++|.++|++.+|.+..-+.. |...+..+..-|..+.
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~~ 305 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGNN 305 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCCC
Confidence 9999887632 2557889999999999988866654 5555555555554443
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0013 Score=57.47 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGC 641 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 641 (834)
.+...+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333344444444445444444443211101 1223333444444555555555444443 11122 33455555556
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 642 RIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
...|+.+.|...++++++..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0037 Score=69.14 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 525 QRNVVSWTSLMTGYGM--HG---LGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 525 ~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
..|...|...+.+... .+ ....|..+|++.++ ..|| ...+..+..++.... +..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~----------------~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRH----------------SQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHH----------------hcCCc
Confidence 4677888888887543 22 36789999999999 7888 455555433332110 11111
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM---P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
. .+++..+.+..++. + ...++..+.++.-.....|+.++|...++++++++| +..+|..++.+
T Consensus 396 ~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 D------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred c------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 0 01112222222221 1 122344555554455556677777777777777776 45667777777
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
|...|+.++|.+.+++....
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 77777777777766666543
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.49 E-value=0.0012 Score=57.56 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGMP-MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLL 671 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 671 (834)
..+...+..+.+.|++++|.+.++++. ..|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456678888999999999999998872 2233 3466678888999999999999999999998875 4678999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcC
Q 003273 672 SNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+.+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998753
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0039 Score=58.58 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYA 603 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 603 (834)
....+..+...+...|++++|+..|++.+.....|+ ...+..+...+.+.|++++|...+++..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777777888888888888888877433332 35677777788888888888888887764 233 355566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
.+..+|...|+...|..-++.. ....+.|.+.++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777665555333221 112567888999999999876 5556666655554
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00039 Score=53.03 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=47.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+...+...|+++.|+..++++++..|+++.++..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778888888888888888888888888888899988889999888888888654
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.059 Score=55.15 Aligned_cols=351 Identities=13% Similarity=0.038 Sum_probs=186.8
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHhhhhhch
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV-TLVSLLSGCASVGA 365 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~ 365 (834)
...+.+..++.+|+..+....+..+. ++.-|..-...+..-|++++|+--.+.-++. .|... +..-.-.++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34566677788888888888777665 5666777777777788888877666554432 11110 11122222222233
Q ss_pred hhhhhHHHHHHH--------HHh--hhcCCCCCChhhHHHHH-HHHHHhCCChHHHHHHHHhcCCCCCCccchHHHH--H
Q 003273 366 LLLGKETHCYTI--------KRV--LSVDGSHPDDLMVINAL-IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI--G 432 (834)
Q Consensus 366 ~~~a~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li--~ 432 (834)
...+.+.+.... ... .......+|....+-.| ..++.-.|+.++|.+.--.+.+.++ +-.+...+ .
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhccc
Confidence 333322221000 000 00000111222222222 3455667778877776655552221 11122222 2
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCC
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 512 (834)
++--+++.+.|...|.+.+. ..|+....-++ ......+....+ =.+...+.|+
T Consensus 212 ~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~----------~~~~k~le~~k~-------------~gN~~fk~G~ 264 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR----LDPDHQKSKSA----------SMMPKKLEVKKE-------------RGNDAFKNGN 264 (486)
T ss_pred ccccccchHHHHHHHhhhhc----cChhhhhHHhH----------hhhHHHHHHHHh-------------hhhhHhhccc
Confidence 33456778888888888876 56665433211 111111122222 2344678899
Q ss_pred HHHHHHHHhhcCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 003273 513 IDTARVVFDNLKQ-------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 513 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
+.+|.+.|.+... ++...|-.......+.|+.++|+.--++... +.|. ...+..-..++...+.|++|.+
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988872 3444566666777889999999998888876 5554 3344444456667788999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 585 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
.|+...+. ..+.++-..+ .+|..-+++.. ..-|-.+++.-+...+.+.....-..++..+|+-
T Consensus 343 d~~~a~q~---~~s~e~r~~l----------~~A~~aLkkSk----Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~ 405 (486)
T KOG0550|consen 343 DYEKAMQL---EKDCEIRRTL----------REAQLALKKSK----RKDWYKILGISRNASDDEIKKAYRKLALVHHPDK 405 (486)
T ss_pred HHHHHHhh---ccccchHHHH----------HHHHHHHHHhh----hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCc
Confidence 88877642 2222222222 23333333332 1234455555555555555555555567777763
Q ss_pred Cc--------hHHHHHHHHHhcCCchhHHHH
Q 003273 665 DG--------SYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 665 ~~--------~~~~l~~~~~~~g~~~~a~~~ 687 (834)
.. -+...+.+|...++..+..+.
T Consensus 406 ~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 406 NAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 22 233455555555555554443
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0011 Score=64.65 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=78.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.+-+.+.+++++|+..|.+. .+.| |++.|..-..+|.+.|..+.|++.++.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999887 4444 677888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003273 684 VARIRSLMKHT 694 (834)
Q Consensus 684 a~~~~~~m~~~ 694 (834)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999887653
No 165
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.039 Score=53.12 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=65.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003273 505 DMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGM----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 579 (834)
..+.|..+++-|.+.++.|.+- +-.+.+.|..++.. .+...+|.-+|++|-+. ..|+..+.+....++...|++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3445556666777777777643 33345545544433 33466777777777654 567777777777777777777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
++|..+++....+. .-++++...++-+-.-.|.-.+
T Consensus 224 eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence 77777777766432 2234455555554444554433
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0017 Score=60.79 Aligned_cols=93 Identities=11% Similarity=-0.129 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888877766 12222 3478888888999999999999999999999998888888888
Q ss_pred HHH-------hcCCchhHHHHHHHH
Q 003273 674 IYA-------NAGRWKDVARIRSLM 691 (834)
Q Consensus 674 ~~~-------~~g~~~~a~~~~~~m 691 (834)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888766666544
No 167
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0075 Score=57.47 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHhhCCCchhHHHHhcccCCCCcchhhH--------HHHHHHHHhCCCchhHHHHH
Q 003273 52 QVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW--------NALIRRAVRLRLPDNAFRLF 123 (834)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~ 123 (834)
..+-+|+.+.... ++++++|.+.|.-..-+++-...|+.-..+..++..| +.++..+.-.+.+.-..+++
T Consensus 123 smR~lhAe~~~~l--gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~ 200 (366)
T KOG2796|consen 123 SMRILHAELQQYL--GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAY 200 (366)
T ss_pred HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 3455676665542 3347778887776666666666666544433332344 55666777778899999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhCCChhHHHHHHHhcCC
Q 003273 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-----FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198 (834)
Q Consensus 124 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 198 (834)
.+.++..-+.++.....+.+.--+.||.+.|...++.+.+.. +..+..+.......|.-..++..|...|++++.
T Consensus 201 ~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 201 HSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 999987655666667777788889999999999999887653 233334444445566677899999999999999
Q ss_pred CCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 199 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
.+..|.+.-|.-.-...-.|+..+|++....|.+ ..|...+-.+++-.
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHESVLFN 328 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhHHHH
Confidence 8877888877766667778999999999999984 46666665555443
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.28 E-value=0.0077 Score=53.80 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=76.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSH 575 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 575 (834)
.-++..-+...|++++|.++|+-.. . .+..-|-.|..++-..|++++|+..|..... +.|| +.++-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHH
Confidence 3445556677899999999998776 3 3566888888888999999999999999988 5675 7788888889999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC
Q 003273 576 SGMVDQGLKYFDSMSKEFGISA 597 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p 597 (834)
.|+.+.|++.|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999998876544343
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0025 Score=59.91 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEP---T-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
.+..+...|.+.|++++|...+++. ...| + ...|..+...+...|+.+.|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444445555555555555555544 1111 1 356777777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 003273 676 ANAGR 680 (834)
Q Consensus 676 ~~~g~ 680 (834)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.004 Score=65.95 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
..|++++|+.+|+.+++ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++.|+
T Consensus 14 ~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34444444444444432 122 2334444444444555555555544444 1223 3445666666666667777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 652 LAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..++++++++|+++.....+..+..+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777776666665555554333
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0036 Score=51.52 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
|..+...+...|++++|+..+++..+ ..|+ ...+..+...+...|++++|.++++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666655 3333 3444555555555566666666555544
No 172
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.26 E-value=0.32 Score=50.44 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=76.9
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH-HHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT-FLVLLY 571 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~ 571 (834)
.++..+++.-.+..-++.|+.+|-+.. .+++..++++|.-+++ |+..-|..+|+--.. .-||... ..-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 344455555555555555555555554 2345555555555443 445556666665444 2444322 233444
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISAR--AEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g 645 (834)
-+...++-+.|..+|+..+.+ +..+ ...|..|++-=..-|++..+..+=+++. .-|...+-....+-|....
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 455566666677777655432 2222 4567777777677788877777666662 2344444444555555544
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.013 Score=52.60 Aligned_cols=90 Identities=11% Similarity=-0.016 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 604 CIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
....-+...|++++|..+|+-+- ..-+..-|..|...|...++++.|...|..+..++++|+.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34444567888888888887652 1235667889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 003273 682 KDVARIRSLMKH 693 (834)
Q Consensus 682 ~~a~~~~~~m~~ 693 (834)
+.|+..|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988865
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.22 E-value=0.0022 Score=52.92 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCC-CCCeeeHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHhHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENV-KLNVVTWSAVIAGYAQRG--------HGHEALDVFRQMQFCGLEPNVVTL 353 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~ 353 (834)
-...|.-+...+++.....+|+.+...|+ .|++.+|+.++.+.++.. +.-+.+.+|++|+..+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677999999999999999999 999999999999887653 244688999999999999999999
Q ss_pred HHHHHhhhh
Q 003273 354 VSLLSGCAS 362 (834)
Q Consensus 354 ~~ll~a~~~ 362 (834)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987654
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0099 Score=60.67 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA-CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888899999999988532 2234445444444 333567777999999998754 445677889999
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 608 LLGRANRLDEAVELIEGMP-MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.+.+.|+.+.|..+|++.- .-|. ..+|...+..-..+|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999872 1233 35999999999999999999999999999988743
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.28 Score=50.23 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=51.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC-----Ch-hHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCC--hHHHH
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAP-----DG-VTFLVLLYACSHSGMVDQGLKYFDSMSKE-FGISAR--AEHYA 603 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~ 603 (834)
.+...+.+.|++++|+++|++....-... +. ..|...+-++...|++..|.+.++..... .++..+ .....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 34555667777777777777766532221 11 12333344556677888888888776522 122222 33455
Q ss_pred HHHHHHhh--cCCHHHHHHHHHhCC
Q 003273 604 CIVDLLGR--ANRLDEAVELIEGMP 626 (834)
Q Consensus 604 ~l~~~~~~--~g~~~~A~~~~~~~~ 626 (834)
.|++++-. ...+++|+.-|+++.
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHhCCHHHHHHHHHHHcccC
Confidence 56666643 345677777777764
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.00021 Score=45.79 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 654 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.00099 Score=51.31 Aligned_cols=53 Identities=9% Similarity=0.190 Sum_probs=44.7
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|+++.|+..++++++.+|+++.++..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788889999999999999999999999999999999999999888877653
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0024 Score=64.56 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHH---hHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDS---MSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-------P-MEPT 630 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~ 630 (834)
...|..|.+.|.-.|+++.|+..++. +.+++|-.. ....++.+.+++.-.|+++.|.+.|+.. . -...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 34577777777788999999988773 334455433 2456888999999999999999988764 1 1123
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELE------SEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
..+..+|.+.|....+++.|+....+-+++- .....++..|+++|...|.-+.|..+....++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567788889888889999998888765542 11346888999999999999999887766554
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.024 Score=53.05 Aligned_cols=80 Identities=8% Similarity=0.028 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYAC 604 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 604 (834)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+...|++++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566677777778888888888888876432221 34677777788888888888888887763 2332 344555
Q ss_pred HHHHHh
Q 003273 605 IVDLLG 610 (834)
Q Consensus 605 l~~~~~ 610 (834)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0013 Score=51.51 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..+...++++.|.++++++++++|+++..+..++.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999999887643
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0014 Score=49.84 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888877 3345 466888888889999999999999999999999764
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.057 Score=55.34 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHH
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS-GMVDQGLKYFDSMSKEFGISAR----AEHYACIVDLL 609 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~ 609 (834)
+..|...|++..|-..+.++- ..|... |++++|+++|+...+-+..... ...+..+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 455556666665555554433 345555 6777777777766543322222 34556677888
Q ss_pred hhcCCHHHHHHHHHhCC---CC-C----CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 610 GRANRLDEAVELIEGMP---ME-P----TPI-IWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.+.|++++|.++|++.. .. + +.. .+-..+-.+...||...|...+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 88999999999888752 11 1 111 112222235667899999999999999988643
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.024 Score=56.07 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIH---ANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
+-|.+.|--|...|.+.|+++.|...|.+. ... +++..+..+..++..+ ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346778888888888888888888888776 223 4566777777764332 25678999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCC
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~~~ 696 (834)
|+..+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.16 Score=54.79 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 581 (834)
+-.+|+..+|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+.+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccch
Confidence 3455666677777775443 345555555555555433 234445555555566677778
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-MEPTP 631 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 631 (834)
|.++|.+|-. ...++++....|+++||..+.++.| ..||+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 8888887742 3568889999999999999999886 33443
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.068 Score=48.43 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=95.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHH
Q 003273 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI-SARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT---PII 633 (834)
Q Consensus 559 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~ 633 (834)
+.|....-..|..+....|+..||...|++... |+ .-|....-.+..+....+++.+|...+++. ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777778888888888888877754 43 445666667777777788888888777765 21121 223
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
--.+...+...|..+.|+..++.++.--| ++..-...+.+++++|+..++..-...+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33455668889999999999999999988 477777888899999999888766555543
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.98 E-value=0.0072 Score=61.67 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHh
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG-YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 359 (834)
.+|..++...-+.+..+.|..+|.+..+.+.. +...|-..... |...++.+.|..+|+...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk---------------- 64 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLK---------------- 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------
Confidence 35677777777777777777777777654211 12222222222 2223444446666665554
Q ss_pred hhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc----cchHHHHHHHH
Q 003273 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV----ATWTVMIGSYS 435 (834)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~ 435 (834)
.++.+...+...++.+.+.++.+.|+.+|++....-+.. ..|...+.-=.
T Consensus 65 --------------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 65 --------------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp --------------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred --------------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999987554443 37888888888
Q ss_pred hcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 436 QNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
+.|+.+.+.++.+++.+ ..|+..++
T Consensus 119 ~~Gdl~~v~~v~~R~~~----~~~~~~~~ 143 (280)
T PF05843_consen 119 KYGDLESVRKVEKRAEE----LFPEDNSL 143 (280)
T ss_dssp HHS-HHHHHHHHHHHHH----HTTTS-HH
T ss_pred HcCCHHHHHHHHHHHHH----HhhhhhHH
Confidence 88999999999888876 45554333
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.0046 Score=57.82 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=81.1
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHc-----CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc-------------
Q 003273 269 KKVFERM--KVKDVVSWNAMVTGYSR-----IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR------------- 328 (834)
Q Consensus 269 ~~~~~~~--~~~d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~------------- 328 (834)
...|+.. ..+|-.+|..+++.|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 46788899999999875 477888888999999999999999999999976542
Q ss_pred ---CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 329 ---GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 329 ---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
.+.+-|++++++|...|+.||..|+..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 22356999999999999999999999999999877643
No 189
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.0029 Score=51.12 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 618 (834)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888874321 2344455577788888888888888876 2 22232 23333457777788888888
Q ss_pred HHHHHh
Q 003273 619 VELIEG 624 (834)
Q Consensus 619 ~~~~~~ 624 (834)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877764
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.92 E-value=0.022 Score=51.52 Aligned_cols=108 Identities=13% Similarity=0.169 Sum_probs=94.2
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM---PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 587 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
++..++..+.|++.+--.|...+.+.|+..||...|++. +...|....-.+..+....++...|...++.+.+-+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 344455677899998899999999999999999999987 45578888888999999999999999999999999886
Q ss_pred --CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 664 --KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 664 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+.....++.+|...|++++|+..|+.....
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5677889999999999999999999988764
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.14 Score=50.86 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=46.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCCCccc----hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVAT----WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.....+.+.|++++|.+.|+.+....|+... .-.++.+|.+.+++++|+..|++.++ ..|+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~----~~P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCcCC
Confidence 3445567789999999999999866665422 13456778899999999999999987 45544
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.80 E-value=0.0018 Score=49.83 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
..|++++|.++|+.+.+. .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666655432 1123444445555555555555555555555
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.79 E-value=0.033 Score=61.76 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 647 VELGELAANRLLEL--ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 647 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.+.+.+.+++..++ +|.++.+|..++-++...|++++|...++++.+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44566666666664 67778889999999999999999999999998765
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.76 E-value=0.92 Score=47.44 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 619 VELIEGMPMEP----TPIIWVALLNG--CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 619 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
+.++++.++.| +...-|.|..| ...+|++.++.-...-+.++.| ++.+|..++-++....+++||-.++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455554433 33455666666 5789999999999999999999 7999999999999999999999998765
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.72 E-value=0.071 Score=54.32 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=77.1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC-------C--CChhHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCC-Ch
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK-------Q--RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK----EGLAP-DG 563 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~ 563 (834)
..|..|.+.|.-.|+++.|...-+.-. . .....+..+.+++.-.|+++.|.+.|+.... .|-+. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666777777765544322 0 1234667778888888888888888877543 33222 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHH---hc-CCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSK---EF-GISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.+..+|.++|.-...+++|+.++..-.. +. ...-....+.+|..+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5566788888888888888888775321 10 1112344555666666666666666655543
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.66 E-value=0.044 Score=47.24 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLG 610 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 610 (834)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999999887665 45677888889999999999999998876432211 1222233445677
Q ss_pred hcCCHHHHHHHHHhC
Q 003273 611 RANRLDEAVELIEGM 625 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~ 625 (834)
..|+.+||++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999888876543
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.66 E-value=0.019 Score=61.02 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=88.7
Q ss_pred CCCCcccHHHHHHHHccCCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCC-CCcchH
Q 003273 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS--GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSW 207 (834)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~ 207 (834)
.+.+......+++.+....+++.+..++-....+ ....-..+..++|..|.+.|..+.+..+++.=...|+ ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4455556677777777777777777766666554 2222234556888888888888888888887777775 788888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhc
Q 003273 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252 (834)
Q Consensus 208 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~ 252 (834)
|.||..+.+.|++..|.++...|... ..-.+..|....+.+|..
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHH
Confidence 88888888888888888888888766 566667777777777763
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.64 E-value=0.45 Score=49.19 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=52.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhch
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 365 (834)
.|.-+...|+...|.++-.+.. .||..-|-..|.+++..++|++-..+... +-.+.-|-.++.+|...|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555555544332 13555555555555555555544443221 1123445555555555555
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
..+|..+...+ ....-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~----------------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444333221 113456788888888888765433
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=1.5 Score=48.11 Aligned_cols=351 Identities=14% Similarity=0.134 Sum_probs=164.0
Q ss_pred hhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCcc--------chHhHHHHhhccCCch
Q 003273 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV--------SLVNALSACASLGTWS 257 (834)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--------t~~~~l~a~~~~~~~~ 257 (834)
+++|.+..+.- |....|..+...-.+.-.++-|...|-+...-.|++.-.. .--+-+.+
T Consensus 679 ledA~qfiEdn-----PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~-------- 745 (1189)
T KOG2041|consen 679 LEDAIQFIEDN-----PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA-------- 745 (1189)
T ss_pred hHHHHHHHhcC-----CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--------
Confidence 45555554432 3556788777776666667777777766644323321000 00011111
Q ss_pred hhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC--CCeeeHHHHHHHHHhcCChhHHH
Q 003273 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK--LNVVTWSAVIAGYAQRGHGHEAL 335 (834)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~ 335 (834)
-.|.+++|++++-.+..+|.. |..+.+.|++-...++++.= ..+.. --..+|+.+...+.....+++|.
T Consensus 746 ---~~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g-~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 ---FYGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG-GSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred ---hhcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246677777777666655532 34455556665555554321 00000 01234666666666666666666
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHH
Q 003273 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 415 (834)
+.|..-.. ....+.++....+++.-+.+. . .+|.+....-.+.+|+...|.-++|.+.|-
T Consensus 817 ~yY~~~~~---------~e~~~ecly~le~f~~LE~la-----~------~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 817 KYYSYCGD---------TENQIECLYRLELFGELEVLA-----R------TLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHhccc---------hHhHHHHHHHHHhhhhHHHHH-----H------hcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 66554321 111222333322222211111 1 345555566667777777777777776665
Q ss_pred hcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcc
Q 003273 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495 (834)
Q Consensus 416 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 495 (834)
+-. .|. +-+..+...+++.+|.++-+...- |...|+. . ..+-++ +.+...
T Consensus 877 r~s--~pk-----aAv~tCv~LnQW~~avelaq~~~l------~qv~tli---a--------k~aaql---l~~~~~--- 926 (1189)
T KOG2041|consen 877 RRS--LPK-----AAVHTCVELNQWGEAVELAQRFQL------PQVQTLI---A--------KQAAQL---LADANH--- 926 (1189)
T ss_pred hcc--CcH-----HHHHHHHHHHHHHHHHHHHHhccc------hhHHHHH---H--------HHHHHH---Hhhcch---
Confidence 543 221 234455566666677666555432 2222221 0 001111 111110
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHH----HHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---VVSWTSLMTGY----GMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 568 (834)
---|.++.+.|+.-+|.+++.+|.+.. -+.|--+-..| .-..+..++++-.++....|...|...
T Consensus 927 -----~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~--- 998 (1189)
T KOG2041|consen 927 -----MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD--- 998 (1189)
T ss_pred -----HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh---
Confidence 123667888888777777777776211 11111111111 111223344444444444444333221
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
+...|...++-++.+..-+ | ....||-.|..--...|..+.|++.--.
T Consensus 999 ----lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 999 ----LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred ----hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 1223333344444332211 1 2344555555666677888888775433
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.54 E-value=0.0084 Score=46.21 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHhHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSG-MVDQGLKYFDSMSK 591 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 591 (834)
+...|..+...+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888888888999999999999888 5676 677888888888888 78888888887763
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.53 E-value=0.055 Score=44.91 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHhHHhcCCCCChH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APDGVTFLVLLYACSHSG--------MVDQGLKYFDSMSKEFGISARAE 600 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 600 (834)
+-...|..+...|++.....+|+.+++.|+ .|...+|+.++.+..+.. ++-+.+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667899999999999999999 889999999998866543 244566778888754 7888888
Q ss_pred HHHHHHHHHhh
Q 003273 601 HYACIVDLLGR 611 (834)
Q Consensus 601 ~~~~l~~~~~~ 611 (834)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.01 Score=62.29 Aligned_cols=63 Identities=17% Similarity=-0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDG---SYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...|+.+..++...|++++|+..++++++++|++.. +|+.++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334555555555555555555555555555554442 255555555555555555555544443
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.46 E-value=0.34 Score=48.17 Aligned_cols=169 Identities=10% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CChh-H---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ--RNVV-S---WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACS 574 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~ 574 (834)
....+.+.|++++|.+.|+.+.. |+.. . .-.++.+|-+.+++++|...|++.++ ..|+ ...+.....+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34445556777777777776652 3221 1 12334556667777777777777776 3443 223333333322
Q ss_pred h--cC---------------C---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003273 575 H--SG---------------M---VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634 (834)
Q Consensus 575 ~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 634 (834)
. .+ + ..+|...|+.++ +-|=...-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HHHHH
Confidence 1 10 1 122223333333 22222333344443333321 11111
Q ss_pred H--HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 635 V--ALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 635 ~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
. ....-|.+.|++.-|..-++.+++--|+.+ .+...+..+|...|..++|..+.+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 223337788889999999999999888754 567788999999999999999887664
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.45 E-value=0.23 Score=51.80 Aligned_cols=161 Identities=16% Similarity=0.048 Sum_probs=102.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCC---C----hhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQR---N----VVSWTSLMTGYGM---HGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 570 (834)
-.|+-.|....+++.-.++.+.+... + ...-....-++.+ .|+.++|++++..+....-.+++.||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34445577777777777777777632 1 1111223345555 788888888888876666677778887777
Q ss_pred HHHHh---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---H-----hC--CC
Q 003273 571 YACSH---------SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD----EAVELI---E-----GM--PM 627 (834)
Q Consensus 571 ~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~-----~~--~~ 627 (834)
..|-. ....++|+..|.+. +.+.|+..+--.++.++...|.-. +..++. . +- ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22467777777644 466676554444555555555422 222222 1 11 11
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..|.-.+.+++.++...||.+.|.+++++++++.|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2455566899999999999999999999999998753
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.43 E-value=0.018 Score=57.60 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLLSN 673 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 673 (834)
|..-++.+.+.|++++|...|+.+ ...|+ ...+.-+...+...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555444443 11122 1234445555555666666666666666555543 234444455
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 003273 674 IYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 674 ~~~~~g~~~~a~~~~~~m~~ 693 (834)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665544
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.41 E-value=0.049 Score=57.91 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=87.9
Q ss_pred CcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CCChhH
Q 003273 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----QRNVVS 530 (834)
Q Consensus 457 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~ 530 (834)
...+...+..+++.+....+++.+..++-..... ... .-+.+..++|..|.+.|..+++..+++.=. -||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~-~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY-LLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc-ccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445566667777777777777777776666554 222 334455688888888888888888887654 478888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 576 (834)
+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888887777778877777776665
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.39 E-value=0.44 Score=50.45 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=37.7
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNV----VSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.++..++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666554 3432 2366666666666666666666666665
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.38 E-value=0.0057 Score=42.09 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
.+|..+..++...|+.+.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888889999999999999999999999999988887764
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.36 E-value=0.039 Score=51.79 Aligned_cols=97 Identities=13% Similarity=0.245 Sum_probs=73.4
Q ss_pred HHHhhc--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--------------
Q 003273 518 VVFDNL--KQRNVVSWTSLMTGYGM-----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS-------------- 576 (834)
Q Consensus 518 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 576 (834)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445554 35677777777777764 466777777888888888888888888888876542
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 577 --GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 577 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
.+.+-|++++++|. .+|+-||.+++..+++.+++.+..
T Consensus 115 yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23477889999995 579999999999999999887753
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.028 Score=57.73 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeE
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 711 (834)
.++.+|...|.+.+++..|++...++++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 456677777888999999999999999999999999999999999999999999999999763
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 003273 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKA 740 (834)
Q Consensus 712 ~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 740 (834)
.|..++|...|..|.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 45556777777777766654
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.28 E-value=0.034 Score=47.93 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=57.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCC---CC-CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 003273 606 VDLLGRANRLDEAVELIEGMP---ME-PT-PIIWVALLNGCRIHANVELGELAANRLLELESE---KDGSYTLLSNIYAN 677 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~---~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 677 (834)
..++-..|+.++|+.+|++.. .. ++ ...+-.+.+.++..|++++|..+++..++-.|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344555666666666666541 11 11 234555666788888888888888888887777 55666777778888
Q ss_pred cCCchhHHHHHHHH
Q 003273 678 AGRWKDVARIRSLM 691 (834)
Q Consensus 678 ~g~~~~a~~~~~~m 691 (834)
.|+++||.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888776443
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.68 Score=44.69 Aligned_cols=166 Identities=10% Similarity=-0.042 Sum_probs=102.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCC--Ch--------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQR--NV--------VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
+++|...|.-..-+++-...|+.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++...+-++.....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 456666665555555555555443321 22 23355666666677888888899999885444467778888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh
Q 003273 570 LYACSHSGMVDQGLKYFDSMSKEF----GISARAEHYACIVDLLGRANRLDEAVELIEGMPME-P-TPIIWVALLNGCRI 643 (834)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~ 643 (834)
.+.-.+.|+.+.|..+|+...+.. ++.-..-+.-.+...|.-+.++.+|...+.+.+.. | |+..-|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888999999999998665432 22222333333444566677777888777777432 2 23333333333344
Q ss_pred cCcHHHHHHHHHHHHhcCCCCC
Q 003273 644 HANVELGELAANRLLELESEKD 665 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.|+...|.+..+.+.+..|...
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccc
Confidence 5677778888888887777543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.10 E-value=0.019 Score=44.74 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=49.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 607 DLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
..|.+.+++++|.+.++++ ...| +...|......+...|+++.|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677788888888888877 3334 45677777888889999999999999999999977655433
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.95 E-value=0.53 Score=40.27 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=85.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467788888888887763 234445555544444444455566666664433332 34555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
...+-.+. .+.......+.+...+|..+.-.+++..+.+-+..+|.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55444443 233445556777888999898899999988765557899999999999999999999999999999875
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.89 E-value=0.11 Score=52.05 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDG----VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
...|++++|+..|+.+++ ..|+. ..+..+..++...|++++|...|+.+.+.+.-.|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---------------- 215 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---------------- 215 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----------------
Confidence 445666666666666666 34442 34555555666666666666666655543221111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
....|..+...+...|+.+.|...++++++..|++.
T Consensus 216 ---------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 ---------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 122333344445566677777777777777766543
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.22 Score=49.43 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
..-++.-...++. |...|-.|...|.+.|+.+.|..-|++..+
T Consensus 142 ~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 142 IARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3333444444555 888888888888888888888888888776
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.12 Score=46.85 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
....++..+...|+.+.|...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999999999999999999999999999988853
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.73 E-value=1.9 Score=47.38 Aligned_cols=255 Identities=14% Similarity=0.065 Sum_probs=136.0
Q ss_pred ChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc--ccHHH--H--HHHHhhhhhHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA--FTLSC--A--LMACARLAALRF 479 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~--~t~~~--l--l~a~~~~~~~~~ 479 (834)
.+++|.+..+. +|.+..|..+...-.+.-.++-|...|-+...- .|++.-. .|..+ + ...-+--|.+++
T Consensus 678 gledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred chHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 35666665544 567788877776665555666666666554321 2221100 00000 0 001122355666
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m 554 (834)
|+.++-.+-++. .-|.++.+.|++-...++++.-.. .-...|+.+...++....+++|.+.|..-
T Consensus 753 aek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 753 AEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666654444332 235666666766666666654331 11346666666666666666666666543
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003273 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634 (834)
Q Consensus 555 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 634 (834)
.. -...+.++.+..++++-..+-. .++.+....-.|.+++.+.|.-++|.+.+-+-.. |.
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la~------~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pk---- 882 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLAR------TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PK---- 882 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHHH------hcCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cH----
Confidence 22 1134445555555555444333 3344556667788899999999999888866642 22
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHH-------------hcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCcc
Q 003273 635 VALLNGCRIHANVELGELAANRLL-------------ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698 (834)
Q Consensus 635 ~~ll~~~~~~g~~~~a~~~~~~~~-------------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 698 (834)
+.+..|...+++.+|.+.+++.. ++-. ..-..--+..+.++|+.-+|.++..+|.++..+|
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~--~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLA--DANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh--hcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 23445555555555555444321 1100 0111223456777888888888888887654443
No 219
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.73 E-value=4.1 Score=44.60 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=125.4
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQR---NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 571 (834)
.....|..-++.-.+.|+.+...-.|++...| -...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44566677777788889999999999888744 223555555555555888888888877766433333444333333
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH----H-H
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAV---ELIEGM-PMEPTPIIWVALLN----G-C 641 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~----~-~ 641 (834)
-+-..|+++.|..+++.+.+++ |+. ..-.--+.+..|.|+.+.+. +++... +..-+..+...+.- - +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4667889999999999998753 553 33334566778889999888 555544 22222222222221 1 4
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
...++.+.|..++.++.+..|++...|..+.+.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5667889999999999999999999999999988777643
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.67 E-value=0.017 Score=45.84 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC---CCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLEL----ES---EKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+++.+...+...|++++|+..+++++++ .+ +-..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666666655543 11 123456677777777777777777766654
No 221
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.50 E-value=2.7 Score=41.03 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=116.3
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH-
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY- 571 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 571 (834)
.........+...+.+..+...+.... ......+..+...+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 444555556666666666666665543 2333455555556666666777777777776632222 122222222
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISA----RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT--PIIWVALLNGCRIH 644 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~ 644 (834)
++...|+++++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56777777777777776642 222 2333444444466677777777777666 22233 45666677777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++.+.+...+....+..|.....+..++..+...|.++++...+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777888888888887776555666666766666667777777666654
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=6.2 Score=44.88 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCCch
Q 003273 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE-LESEKDGSYTLLSNIYANAGRWK 682 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 682 (834)
++..+....+.+.+..+.+.... -++..|--++..+...+.++.-.+...++++ +..++.-.-..+.+++++.+...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~lt 788 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLT 788 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceE
Confidence 34445566677777777777753 3677888888888888876666555555443 33334444466677777776543
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.21 Score=51.50 Aligned_cols=138 Identities=9% Similarity=-0.030 Sum_probs=97.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
.+.|.+.|++..|...|++.+.. -+. ...-+.++...... .-...+..+.-+|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45667777777777777776651 111 11111122222111 123346678888999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhH-HHHHHHH
Q 003273 615 LDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV-ARIRSLM 691 (834)
Q Consensus 615 ~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 691 (834)
+.+|++..++. .. ++|+-..---..+|...|+++.|+..++++++++|+|..+-.-|+.+-.+....++. +++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877 22 356667767778899999999999999999999999999988888888777776654 7888888
Q ss_pred Hhc
Q 003273 692 KHT 694 (834)
Q Consensus 692 ~~~ 694 (834)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.40 E-value=0.53 Score=45.47 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCC--CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKL--NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 361 (834)
-.....+.+.|++++|...|+.+....+.. -..+.-.++.++.+.|++++|...+++.++.-..-...-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344455678899999999999998764331 123455667788899999999999999877532222222333333322
Q ss_pred hhchhhhh------hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH
Q 003273 362 SVGALLLG------KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435 (834)
Q Consensus 362 ~~~~~~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~ 435 (834)
........ ...... -...+..++.-|-...-..+|......+. +.=...--.+..-|.
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~--------------A~~~~~~li~~yP~S~y~~~A~~~l~~l~--~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRK--------------AIEEFEELIKRYPNSEYAEEAKKRLAELR--NRLAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHH-TT---HHHHH--------------HHHHHHHHHHH-TTSTTHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHH--------------HHHHHHHHHHHCcCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 21111000 000000 01123444444444455555554444332 100000112345577
Q ss_pred hcCChhHHHHHHHhhcc
Q 003273 436 QNGGANDALALFPQMFQ 452 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~ 452 (834)
+.|.+..|..-|+.+++
T Consensus 153 ~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp CTT-HHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH
Confidence 77888888887777776
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.36 E-value=0.038 Score=43.73 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 565 TFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
++..+...|...|++++|+.+|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.28 E-value=1.7 Score=41.88 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ--RN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG--VTFLVLLYACS 574 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~ 574 (834)
....+...|++++|...|+.+.. |+ ....-.++.++-+.|++++|...|++.++ .-|+. ..+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHH
Confidence 34445556667777777666651 21 12344455566666777777777776666 23431 11222222211
Q ss_pred hc-------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH--HHHH
Q 003273 575 HS-------------GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV--ALLN 639 (834)
Q Consensus 575 ~~-------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~ll~ 639 (834)
.. +...+|...|+. ++.-|=.+....+|...+..+. +...-. .+..
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 11 111222222222 2333333333444444333321 111111 1233
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHH
Q 003273 640 GCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 685 (834)
-|.+.|....|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 37788899999999999999988754 35677888899999887444
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.22 E-value=0.17 Score=43.03 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCC---chHHHHHHHHHhcCC
Q 003273 607 DLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELE-SEKD---GSYTLLSNIYANAGR 680 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 680 (834)
-++...|+++.|++.|.+. . .+..+..||.-..+++.+|+.+.|..-+++++++. |... .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888766 2 22457789999999999999999999999999984 4322 367888889999999
Q ss_pred chhHHHHHHHHHhcC
Q 003273 681 WKDVARIRSLMKHTG 695 (834)
Q Consensus 681 ~~~a~~~~~~m~~~~ 695 (834)
-+.|+.-|....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998887765
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.19 E-value=0.064 Score=48.73 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhHH
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVTL 353 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~ 353 (834)
.....++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|++.|+++.+ .|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667788889999999999999999998766 888999999999999999999999998853 4999988764
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.17 E-value=0.69 Score=49.14 Aligned_cols=219 Identities=14% Similarity=0.072 Sum_probs=118.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCChHHHHHHHHHHhhcCCHHH
Q 003273 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF--GISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
+..+.+.-+++-++.++ +.||..+-..++ +-..+..+.++.++|++..+.- .+..+. .....|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~--------~~~~~g~--- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQ--------FLQHHGH--- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhh--------hhhcccc---
Confidence 44556666777777777 778754433333 3334556788888888765420 000000 0001111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 618 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..+.+.+-...|-..+-..|...+++.|+.++|++.++.+++..|. +-.++..|+..|...+++.|+..++.+--+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111112233444455666678888888999998888887665 34678888889999999999888887765444
Q ss_pred CccCCceeEEE--eCCeEEEEeeCCCCCCC-------hHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhh-hc
Q 003273 696 VKKRPGCSWVQ--GKEGTATFFVGDRTHPQ-------SQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL-FE 765 (834)
Q Consensus 696 ~~~~~~~s~~~--~~~~~~~f~~~~~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 765 (834)
..+....+|.. ++-+ .+||+..|. +......++-+.+.++...++|.=-.-...+.-. -++.+ ..
T Consensus 326 lpkSAti~YTaALLkaR----av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrG 400 (539)
T PF04184_consen 326 LPKSATICYTAALLKAR----AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRG 400 (539)
T ss_pred CCchHHHHHHHHHHHHH----hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCC
Confidence 44444444321 0100 122322222 1222334566777788888888643333332211 22222 34
Q ss_pred ccHHHHHHhchh
Q 003273 766 HSEKLALAYGIL 777 (834)
Q Consensus 766 ~~e~la~~~~~~ 777 (834)
-||-+|-||.-+
T Consensus 401 DSEAiaYAf~hL 412 (539)
T PF04184_consen 401 DSEAIAYAFFHL 412 (539)
T ss_pred cHHHHHHHHHHH
Confidence 577777776544
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.15 E-value=0.56 Score=50.86 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHH-----H-HHCCCC---CCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhh
Q 003273 322 IAGYAQRGHGHEALDVFRQ-----M-QFCGLE---PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392 (834)
Q Consensus 322 i~~~~~~g~~~~A~~l~~~-----m-~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 392 (834)
...+...|+.++|.++.-+ | .+-+-+ .+..+...+-.-+-+...+..|.++|..+-..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------- 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------- 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------------
Confidence 3444556666666655321 1 111112 22333333333344455566666666655332
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc
Q 003273 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424 (834)
Q Consensus 393 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 424 (834)
.+++++....+++++|..+-++.++..+|+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccccccc
Confidence 456777888888888888888877544554
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=95.13 E-value=0.9 Score=48.27 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=96.6
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-cCCCCC-hhHHHHHHHHHHh---------cCCHHHHHHHHHHhH
Q 003273 529 VSW--TSLMTGYGMH-----GLGDKAHWAFDQMRK-EGLAPD-GVTFLVLLYACSH---------SGMVDQGLKYFDSMS 590 (834)
Q Consensus 529 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~-~~t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 590 (834)
..| ..++.|.... ...+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 135678888998882 227777 4445444433221 123445555555554
Q ss_pred HhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 591 KEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 591 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
.+.| |......+..++.-.|+++.|..+|++. ...|| +..|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 4555666666677777788888888887 34566 4577777777778888899999999999998875544
Q ss_pred HHH--HHHHHHhcCCchhHHHHHH
Q 003273 668 YTL--LSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 668 ~~~--l~~~~~~~g~~~~a~~~~~ 689 (834)
-.. .+++|... ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 333 33345544 4566666654
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=8.1 Score=44.02 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=27.9
Q ss_pred HHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHh
Q 003273 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (834)
.-|....++..-...++.+.+.|..+...-+.|+.+|.+.++.++-.++.+..
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 33333344444444555555555555555556666666666665555555443
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.03 E-value=5.5 Score=41.84 Aligned_cols=439 Identities=11% Similarity=0.100 Sum_probs=215.3
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCccc-HHHHHHHHcc
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT-FPFVLKACGE 147 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~ 147 (834)
|-.|+.-|...|..+.-++.+++|..|-+ -...|..-|++-....+++....+|.+-....+..|..+ |..-++--..
T Consensus 45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~ 124 (660)
T COG5107 45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNN 124 (660)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCc
Confidence 78899999999999999999999987655 225788888888888889999999998887655555432 3333332221
Q ss_pred CCCc---hHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHHh---CC------ChhHHHHHHHhcCCCCCCCcc-hHHH---
Q 003273 148 LPSS---RCGSSVHAVICS-SGFDSN-VFVCNALMAMYAR---CD------TLSYARQLFDEMFQPGICDIV-SWNT--- 209 (834)
Q Consensus 148 ~~~~---~~a~~~~~~~~~-~g~~~~-~~~~~~Li~~~~~---~g------~~~~A~~~~~~m~~~~~~~~~-~~~~--- 209 (834)
.+.- ..-.+.++..+. .+++|- ...|+..+..+-. .| ++|..+..+.+|.....-|.. .|+-
T Consensus 125 ~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~ 204 (660)
T COG5107 125 LITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYEN 204 (660)
T ss_pred ccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 1111 111233444333 245443 3456666655421 23 345566677777655332221 2321
Q ss_pred ---HHHHHHhC---C----ChhHHHHHHHHhhhC-CCCCC----CccchHhHHHHhhccCCchhhh---------hcCcH
Q 003273 210 ---IVAAYAQS---G----DAEGGLMLFARMTGD-VKVQG----DGVSLVNALSACASLGTWSRGK---------QCGMM 265 (834)
Q Consensus 210 ---li~~~~~~---g----~~~~A~~~~~~m~~~-~~~~p----~~~t~~~~l~a~~~~~~~~~~~---------~~g~~ 265 (834)
=+.-.... | -+-.|...+++.... .|... +..|++.+-. -+...++..-+ ..+..
T Consensus 205 fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-~s~S~WlNwIkwE~en~l~L~~~~~ 283 (660)
T COG5107 205 FELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-TSDSNWLNWIKWEMENGLKLGGRPH 283 (660)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-cccchhhhHhhHhhcCCcccCCCcH
Confidence 11111111 1 133455555554321 02211 1112221111 00000000000 01111
Q ss_pred HH-HHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHH-HHHhcCChhHHHHHHHH
Q 003273 266 EE-AKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA-GYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 266 ~~-A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~ 340 (834)
.+ ..-+++.+. .-...+|----..+...++-+.|+..... |.. +..+.+..++ .|--..+-++....|+.
T Consensus 284 ~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~-~spsL~~~lse~yel~nd~e~v~~~fdk 358 (660)
T COG5107 284 EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIE-MSPSLTMFLSEYYELVNDEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----ccc-CCCchheeHHHHHhhcccHHHHhhhHHH
Confidence 11 001111111 01223333333344455566666655433 322 2222322232 23333344444444444
Q ss_pred HHHCCCCCCHhHHHHHHHhhhh---hchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhc
Q 003273 341 MQFCGLEPNVVTLVSLLSGCAS---VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 341 m~~~g~~pd~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 417 (834)
..+. ...=-+.+.+=+. -|+.+.-.+ ..+++ ...-..+|..+++.-.+..-++.|+.+|-+.
T Consensus 359 ~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~E---ll~kr-------~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 359 CTQD-----LKRKYSMGESESASKVDNNFEYSKE---LLLKR-------INKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred HHHH-----HHHHHhhhhhhhhccccCCccccHH---HHHHH-------HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3220 0000000000000 111111111 11111 1123456777777777777788888888877
Q ss_pred CCCC---CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Q 003273 418 APKN---RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494 (834)
Q Consensus 418 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 494 (834)
.+.+ +++..++++|.-++. |++.-|..+|+.-+. --||...|
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~----~f~d~~~y------------------------------ 468 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL----KFPDSTLY------------------------------ 468 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH----hCCCchHH------------------------------
Confidence 6433 577778888776653 556667777765443 23333222
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RN--VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
-+-.+..+...++-+.|..+|+...+ .+ ...|..||.--..-|+...+..+=++|.+ +-|...+....
T Consensus 469 -----~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF 541 (660)
T COG5107 469 -----KEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVF 541 (660)
T ss_pred -----HHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHH
Confidence 24445555666777777777775542 22 34677788777788888888888888887 56665444433
Q ss_pred HH
Q 003273 570 LY 571 (834)
Q Consensus 570 l~ 571 (834)
.+
T Consensus 542 ~S 543 (660)
T COG5107 542 TS 543 (660)
T ss_pred HH
Confidence 33
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.95 E-value=1.2 Score=41.76 Aligned_cols=177 Identities=15% Similarity=0.064 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHhhcC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 510 SGDIDTARVVFDNLK--QRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
.|-..-|+.=|.... .|+ +..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444443 343 34567666667777888888888887777 5554 44444444456667777777765
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
|...-+...-+|=...| +-.-.+.-+..+|..-+ ++.. ..|..-|+.-+-.+....=. -+.+++++.+...++
T Consensus 156 ~~~fYQ~D~~DPfR~LW---LYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~~n 229 (297)
T COG4785 156 LLAFYQDDPNDPFRSLW---LYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKIS--EETLMERLKADATDN 229 (297)
T ss_pred HHHHHhcCCCChHHHHH---HHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhhccch
Confidence 54433221222222222 22223344566666543 3332 34556677666654432211 123344444433332
Q ss_pred -------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 665 -------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 665 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+.+|.-|+.-|...|..++|..+|+.....
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 368899999999999999999999988654
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.84 E-value=0.36 Score=42.08 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003273 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606 (834)
Q Consensus 559 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 606 (834)
..|+..+..+++.+|+..|++..|+++.+...+.|+++-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555555555555555566666665555555555554444444444
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=2.2 Score=40.90 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=13.5
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
.++--..+|..+|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 344555666666666655555444
No 237
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.58 E-value=0.4 Score=41.81 Aligned_cols=53 Identities=15% Similarity=0.020 Sum_probs=46.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC
Q 003273 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254 (834)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~ 254 (834)
|+.....+++.+|+.+|++..|+++.+...+.+++.-+..+|..++.-+....
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 68888999999999999999999999999988888888888888888766443
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.41 E-value=1.7 Score=39.01 Aligned_cols=120 Identities=11% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 579 (834)
++..+.+.+........++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33444444444444444444331 22334455555555442 2233333332 12334444566677777777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRA-NRLDEAVELIEGMPMEPTPIIWVALLNGCR 642 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 642 (834)
+++..++..+.. +...++.+... ++++.|.+++.+.. +...|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 777777665521 22233334333 67777777776632 4556766666554
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.37 E-value=7.2 Score=40.25 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=97.0
Q ss_pred chhHHHHhcccCCCCcchhhHHHHHHHHHh--CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHH--ccCCCchHHHHHH
Q 003273 83 PSPALSLLQRISPSPFSVFWWNALIRRAVR--LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSVH 158 (834)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~ 158 (834)
+..+.+.|..-.. + .-|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..||.+- .-.|+.+.|++-|
T Consensus 69 P~t~~Ryfr~rKR-d---rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 69 PYTARRYFRERKR-D---RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred cHHHHHHHHHHHh-h---hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 4455555554332 2 357777777654 46777777766654432 456666677777544 4569999999999
Q ss_pred HHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC
Q 003273 159 AVICSSGFDSNVFV--CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 159 ~~~~~~g~~~~~~~--~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 233 (834)
+.|.. .|.... ...|.----+.|..+.|++.-++.-...+.=...|.+.+...+..|+++.|+++++.-+..
T Consensus 144 eAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 144 EAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99985 333322 1223333346788899988888776654445677899999999999999999999887654
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.33 E-value=1.7 Score=46.27 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCCC
Q 003273 649 LGELAANRLLELESEKD 665 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~ 665 (834)
.|.++..++.+.+|..+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 35678888888888644
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=94.21 E-value=0.39 Score=43.37 Aligned_cols=84 Identities=13% Similarity=-0.020 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 507 YSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 507 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
+...|++++|..+|.-+. .-|..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 345677777777776554 2345556666666666677777777776665532 123444555566666667777777
Q ss_pred HHHHHhHH
Q 003273 584 KYFDSMSK 591 (834)
Q Consensus 584 ~~~~~m~~ 591 (834)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 76666653
No 242
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=13 Score=42.22 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 003273 545 DKAHWAFDQMRKEGLAP-----DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 619 (834)
+..+++|.+.-...+-| ........+..|.+.|-++|-.-++..| | .++.+|.-..-+-++.++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHH
Confidence 45566666655443333 1122334444555555555555555444 2 22333333344445556666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 620 ELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 620 ~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
++.++- .|...|..|++.+...=
T Consensus 682 efvKeq---~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKEQ---DDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHhc---CCHHHHHHHHHHhhcCc
Confidence 655443 47778888888766554
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.01 E-value=0.26 Score=47.93 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=76.0
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHc-----CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcC-------------
Q 003273 270 KVFERMK--VKDVVSWNAMVTGYSR-----IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG------------- 329 (834)
Q Consensus 270 ~~~~~~~--~~d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g------------- 329 (834)
..|.... ++|-.+|-+.+..+.. .+.++-....++.|.+-|+..|..+|+.|+..+-+-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 5677888888877754 3567777788889999999999999999998664432
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 330 ---HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 330 ---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345899999999999999999999999999876643
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.99 E-value=0.1 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
.+|..+...+...|+.++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888889999999999999988886
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.98 E-value=1 Score=39.77 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=40.6
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 609 LGRANRLDEAVELIEGM----PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
..+.|++++|.+.|+.+ |..| ....--.|+.++...++++.|...++++++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44567777777777665 2222 1234456777888889999999999999999887664
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.92 E-value=10 Score=40.16 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=84.3
Q ss_pred HHhcCC-HHHHHHHHhhcC---CCChhHHHHHH----HHHHH---cCChHHHHHHHHHHHHcCCCCC----hhHHHHHHH
Q 003273 507 YSRSGD-IDTARVVFDNLK---QRNVVSWTSLM----TGYGM---HGLGDKAHWAFDQMRKEGLAPD----GVTFLVLLY 571 (834)
Q Consensus 507 y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~ 571 (834)
+-+.|. -++|.++++.+. .-|...-|... ..|.+ .....+-+.+-+-..+.|+.|- ...-+.|..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 334444 777888887776 33544444332 23332 1234445555555667788874 333444554
Q ss_pred H--HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003273 572 A--CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637 (834)
Q Consensus 572 a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 637 (834)
| +...|++.++.-+-..+. .+.|++.+|.-++-.+....+++||.+++...| |+..+|++-
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 4 556799999887766665 688999999999999999999999999999998 676666553
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=3.5 Score=41.04 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=79.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003273 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 269 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 348 (834)
++.+++...+....--.-.......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--..
T Consensus 123 r~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 123 RQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence 33444444333333333344566788999999999888876544 55666778888999999999999988875432222
Q ss_pred CHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003273 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418 (834)
Q Consensus 349 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 418 (834)
.......-|....+.........+....- ..|.|...-..|...|...|+.++|.+.+-.+.
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222222222333333333333333222 234455666666666666666666665554444
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.76 E-value=3.9 Score=43.66 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=75.5
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 512 DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 512 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
...+|.+.-++.. ..|......+..+....|+.+.|..+|++... +.|| ..+|......+...|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455556555554 34667777777777778889999999999888 7888 6667777777888899999999888
Q ss_pred HhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 588 SMSKEFGISAR---AEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 588 ~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
... .+.|. .....-.+++|+..+ +++|++++-+
T Consensus 397 ~al---rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 397 KSL---QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHh---ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 765 45554 334445566776554 6777777644
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.73 E-value=19 Score=42.88 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=15.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHhh
Q 003273 209 TIVAAYAQSGDAEGGLMLFARMT 231 (834)
Q Consensus 209 ~li~~~~~~g~~~~A~~~~~~m~ 231 (834)
+-+.-++..+++.+|+++.++-+
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhR 704 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHR 704 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777887777766554
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=0.72 Score=45.30 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACI 605 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 605 (834)
|+.-+.. .+.|++.+|...|...++.. |+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5444433 45677888888888887742 33 3446677888888888888888888887776655553 666667
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 003273 606 VDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~ 625 (834)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 77777777777777666665
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=2.1 Score=42.56 Aligned_cols=120 Identities=10% Similarity=0.057 Sum_probs=75.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCcHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL---LNGCRIHANVE 648 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 648 (834)
.....|++.++...|+..... .+-+.+.-..|..+|...|+.++|..++..+|.+-...-|..+ +....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777766532 2223455666777788888888888888887654333333331 11222222111
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
. ...+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 13345566778999999999999999999999998877666543
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.53 E-value=0.6 Score=45.50 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=79.6
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----------
Q 003273 516 ARVVFDNLK--QRNVVSWTSLMTGYGMH-----GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG----------- 577 (834)
Q Consensus 516 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 577 (834)
.++.|..+. ++|-.+|-+++..+..+ +.++=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 67888888888887653 557777778889999999999999999998765532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 578 -----MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 578 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
+-+-++.++++|. .+|+.||.++-..++++++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2356888999995 6799999999999999999998643
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=0.44 Score=46.73 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
||...| |..++...|+++.|...|..+.+-.|++ +.++.-|+.+..+.|+-++|..+++...+
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444 5555555555555655555555544432 34555666666666666666666665544
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.39 E-value=0.21 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
No 255
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=17 Score=40.96 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=173.6
Q ss_pred hcCcHHHHHHHHHhcCCCC---hhHHHHHHHHHHcCCCH--HHHHHHH-HHhHhcCCCCCeeeHHHHHHHHHhcCChhHH
Q 003273 261 QCGMMEEAKKVFERMKVKD---VVSWNAMVTGYSRIGSF--EDAFALF-KKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~~--~~A~~l~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 334 (834)
..+.+..|.++-.-+..|. ..+|.....-+.+..+. +++.+.. +++... .. +.++|..+..--.+.|+.+-|
T Consensus 449 ~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~-~~iSy~~iA~~Ay~~GR~~LA 526 (829)
T KOG2280|consen 449 DRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LT-PGISYAAIARRAYQEGRFELA 526 (829)
T ss_pred hcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CC-CceeHHHHHHHHHhcCcHHHH
Confidence 5677888888888777665 56777888888776432 2333333 333322 23 677888888888899999999
Q ss_pred HHHHHHHHHCCCC----CCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHH
Q 003273 335 LDVFRQMQFCGLE----PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410 (834)
Q Consensus 335 ~~l~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 410 (834)
..+++.=...+-+ .+..-+...+.-+...|+.+...++.-.+.+.. + .-+...-..+.-.|
T Consensus 527 ~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---------~------~s~l~~~l~~~p~a 591 (829)
T KOG2280|consen 527 RKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---------N------RSSLFMTLRNQPLA 591 (829)
T ss_pred HHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---------H------HHHHHHHHHhchhh
Confidence 8887642221110 111223344444555555555555444443320 0 00011111223334
Q ss_pred HHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhh--cccC--CCCcCCcccHHHHHHHHhhhhhHHHHHHHHH-
Q 003273 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM--FQQD--KLVKPNAFTLSCALMACARLAALRFGRQIHA- 485 (834)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m--~~~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~- 485 (834)
..+|.+..+.. |.. .+-+.| +.++-.+++.-|..= .... .+..|+ ....-++|++......+.+..+
T Consensus 592 ~~lY~~~~r~~-~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 592 LSLYRQFMRHQ-DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hHHHHHHHHhh-chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHH
Confidence 44444332111 100 011112 222222222222110 0000 122232 3334445554443221111111
Q ss_pred H---------H-HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 486 Y---------V-LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 486 ~---------~-~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
. + .+.|..-.+..+ +--+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-.++-+.+.
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl-~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSL-HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcH-HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 1 1 122322122222 3334445667888999999988888888888888888999888887766655532
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 556 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.++-|.-...+|.+.|+.++|.+++-... +.. -.+.+|.+.|++.+|.++--+
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 25667778889999999999999886553 221 467888999999988877544
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.29 E-value=1.4 Score=47.94 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=84.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
....|+++++.++...-. +-|. ..-...++.-+.+.|..+.|+++-..-. .-.++-.++|++
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 345677777766664111 2232 3336677777788888888887743322 234566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 616 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+.|.+..++.. +...|..|......+|+.+.|++++++.- -+..|+-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998877664 77799999999999999999999888754 35677788888888777777666665544
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.17 E-value=3 Score=36.93 Aligned_cols=19 Identities=5% Similarity=-0.024 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 003273 647 VELGELAANRLLELESEKD 665 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~ 665 (834)
...|...+++++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5577778888888888653
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.02 E-value=9.3 Score=37.07 Aligned_cols=165 Identities=16% Similarity=0.078 Sum_probs=117.0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----ChhHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNV-VSWTSLMT-GYGMHGLGDKAHWAFDQMRKEGLAP----DGVTF 566 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~ 566 (834)
.....+..+...+...++...+...+..... ++. ..+..... .+...|+.+.|...|.+... ..| ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 170 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEAL 170 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHH
Confidence 4445555666667777778888888877763 222 23333333 68889999999999999866 444 24444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRI 643 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 643 (834)
......+...++.+++...+....+ .... ....+..+...+...|.+++|...+... ...|+ ...+..+...+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 5555557788899999999998874 2233 3677888888999999999999998877 33344 4455556666566
Q ss_pred cCcHHHHHHHHHHHHhcCCC
Q 003273 644 HANVELGELAANRLLELESE 663 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~ 663 (834)
.++.+.+...+.+.++..|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 LGRYEEALEALEKALELDPD 268 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc
Confidence 67799999999999999886
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.65 E-value=6.1 Score=35.33 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
..-..++..+.+.+.......+++.+...+ ..+...++.++..|++.. .++....++. .++......++..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344567788888889999999999998876 356667888888887653 4455555542 1122223446777
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH-ANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
+.+.+.++++.-++.+++. |...+..+..+ ++.+.|.+.+++ +.++..|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7778888888888887752 22233333334 778888777765 234556666665554
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.61 E-value=11 Score=36.92 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee---HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT---WSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLS 358 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~ 358 (834)
+-.=+..-.+.|++++|.+.|+.+..+.+- +..+ --.++-++.+.+++++|+..+++..+.- -.||. -|..-|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 333344456889999999999999977544 4444 3345567889999999999999988763 33443 3444444
Q ss_pred hhh
Q 003273 359 GCA 361 (834)
Q Consensus 359 a~~ 361 (834)
+.+
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 444
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.50 E-value=0.72 Score=42.58 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHhhcCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 608 LLGRANRLDEAVELIEGM----PM---EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~----~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
-+.+.|++++|..-|... |. +-..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666554 21 11234555556667888999999999999999999888888888999999999
Q ss_pred chhHHHHHHHHHhcC
Q 003273 681 WKDVARIRSLMKHTG 695 (834)
Q Consensus 681 ~~~a~~~~~~m~~~~ 695 (834)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998753
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.27 E-value=4.1 Score=41.45 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHhH---HhcCCCCChHHHHH-
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAP-D----GVTFLVLLYACSHSGMVDQGLKYFDSMS---KEFGISARAEHYAC- 604 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~- 604 (834)
|..++.-.+.++++++.|+...+--... | -..+..|.+.|....++++|.-+..+.. ..+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555566777777777665521111 1 2446677777777777777766554332 22333332222322
Q ss_pred ----HHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 605 ----IVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 605 ----l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
|.-+|-..|.+.+|.+..++.. ..-| ......+...|+..|+.|.|..-|+.+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3334556666666666555431 1122 234455566677777777777777766543
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.03 E-value=13 Score=36.43 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=45.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|.+.|....|..-++.+++--|+.+ ..+..+..+|...|..++|.+..+.+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3447888999999999999999877654 45667788899999999999998887654
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=3.7 Score=41.30 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
|+..+|...++++++. .+.|-..+.-.-.+|...|+.+.-...++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 4444444444444442 22233444444444444554444444444443
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.96 E-value=2.1 Score=43.39 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CC--ChHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPD---GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI--SA--RAEH 601 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~ 601 (834)
.|-.+..++.+.-++.+++.+-+.-.. .|..|. .....++..|....+.++++++.|+...+--.- +| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555555555443332 233332 233445666777778899999999987642211 12 2457
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-H-----HHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCC-
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-------PMEPTP-I-----IWVALLNGCRIHANVELGELAANRLLEL--ESEKD- 665 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~- 665 (834)
|..|..+|++..++++|.-+..+. ..+ |. . +..-+.-+++..|..-.|.+..+.+.++ ...|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 889999999999999887665544 222 21 1 2233444688999988898888887765 22233
Q ss_pred ---chHHHHHHHHHhcCCchhHHHHHHH
Q 003273 666 ---GSYTLLSNIYANAGRWKDVARIRSL 690 (834)
Q Consensus 666 ---~~~~~l~~~~~~~g~~~~a~~~~~~ 690 (834)
.....++++|...|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 4456899999999998887665543
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.94 E-value=2.9 Score=45.44 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=56.4
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... +..++--+...|+.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HH
T ss_pred HHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCCHH
Confidence 34456677777776654433 556777777777777777777777776654 344444455555555
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
.-.++-......|-. |....++...|++++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~~-------n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGDI-------NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-H-------HHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCH-------HHHHHHHHHcCCHHHHHHHHHH
Confidence 555555554444432 3334444445555555555443
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.77 E-value=35 Score=40.86 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=70.4
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHH
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (834)
.|.-.+..--++|.+.+|+.++. |+...+..+..+|+.. ... ...+.-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~h------------L~~------------~~~~~~ 957 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADH------------LRE------------ELMSDE 957 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHH------------HHH------------hccccH
Confidence 34444444455566666665553 6666666666555421 000 011223
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCccc--HHHHHHHHhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT--LSCALMACARL 474 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t--~~~ll~a~~~~ 474 (834)
..-+|.++|+.++|.+.|. .+|++.+|+.+-.++.. .-|... --.+..-+...
T Consensus 958 Aal~Ye~~GklekAl~a~~--------------------~~~dWr~~l~~a~ql~~-----~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYK--------------------ECGDWREALSLAAQLSE-----GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccHHHHHHHHH--------------------HhccHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHc
Confidence 3456777777777765544 34677777777776643 111111 12233333333
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~ 527 (834)
+..-+|-++...... + ..-.+..|++...+++|.++-......|
T Consensus 1013 ~kh~eAa~il~e~~s------d---~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS------D---PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred ccchhHHHHHHHHhc------C---HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 333333333222211 1 1234555666667777776665554333
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.68 E-value=7.9 Score=42.83 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCcHHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYA-CIVDLLGRANRLDEAVELIEGMPM------EPTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~ 649 (834)
...+.+.++++.+.+. -|+...|. --..++...|++++|++.|++.-. +-....+--+...+....++++
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455666666666532 24433332 223445556667777766665421 1123445566667777888888
Q ss_pred HHHHHHHHHhcCCCCCchH-HHHHHHHHhcCCc-------hhHHHHHHHHHh
Q 003273 650 GELAANRLLELESEKDGSY-TLLSNIYANAGRW-------KDVARIRSLMKH 693 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~ 693 (834)
|...+.++.+...-+...| ...+-+|...|+. ++|.++++++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9888888888765444444 4455566777888 777777766643
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.65 E-value=0.27 Score=33.64 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHH
Q 003273 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211 (834)
Q Consensus 172 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li 211 (834)
++..+...|.+.|++++|+++|++..+..|.|...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556666666777777777777766666555665555443
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.60 E-value=1.3 Score=37.94 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=33.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
+.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|+.=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45566667777777776666 4543 55666666666666666666666665543
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=11 Score=36.47 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCC--hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 266 EEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 266 ~~A~~~~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
+.|.-+.+++...+ +..|+.-..+|..+|..+-|-..+++.-.. ..+-++++|+++|++-..
T Consensus 75 EqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 75 EQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHH
Confidence 33444444443322 234666778888888888887777665432 223455666666665432
Q ss_pred CCCCCC-----HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh--
Q 003273 344 CGLEPN-----VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA-- 416 (834)
Q Consensus 344 ~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-- 416 (834)
.=..-| ...+..+-+.+.+...+.++-..+..-.......+ ..+.--..+-+.|-.|.-..++..|.+.|+.
T Consensus 139 vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~-~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 139 VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD-AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh-hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 100011 11122222333344444443332222111111000 1222223345555566666788888888877
Q ss_pred -cCCCC--CCccchHHHHHHHHhcCChhHHHH
Q 003273 417 -IAPKN--RDVATWTVMIGSYSQNGGANDALA 445 (834)
Q Consensus 417 -~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 445 (834)
++... .+..+...|+.+|- .|+.+++..
T Consensus 218 qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 218 QIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred cCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 33211 24566667777663 344444433
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.50 E-value=4.2 Score=44.98 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=38.0
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHH-HHHHHcCChHHHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHH
Q 003273 511 GDIDTARVVFDNLKQ--RNVVSWTSLM-TGYGMHGLGDKAHWAFDQMRKEG-LAP--DGVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 511 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
...+.|.++++.+.+ |+...|...- ..+...|+.++|++.|++..... -.| ....+.-+.-.+.-.++|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345555566655552 5555444332 22344556666666666544210 001 12233334444445555555555
Q ss_pred HHHHhHH
Q 003273 585 YFDSMSK 591 (834)
Q Consensus 585 ~~~~m~~ 591 (834)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555543
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.38 E-value=18 Score=36.83 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=12.8
Q ss_pred HhCCChhHHHHHHHHhhhC
Q 003273 215 AQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~ 233 (834)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 3567777777777777643
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=4.8 Score=40.55 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=85.5
Q ss_pred hCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhCCChhH
Q 003273 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS---GFDSNVFVCNALMAMYARCDTLSY 188 (834)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~~~~~g~~~~ 188 (834)
.+|.+.+|...++++.+. .+.|...+...=.+|.-.|+...-+..++.++-. +++..+++-..+.-.+..||-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467788888888888765 5667667777778888888888777777777643 222223333444445567899999
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhh
Q 003273 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT 231 (834)
Q Consensus 189 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 231 (834)
|++.-++..+.++.|..+-.++...+--+|++.++.++..+-.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9999988887766677777777788888888888888765543
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.46 E-value=26 Score=37.06 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCChHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP---DGVTFLVLLYACSHSGMVDQGLKYFDSMSKE-FGISARAEHY 602 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~ 602 (834)
...+|..+...+.+.|+++.|...+.++...+..+ ++.....-.......|+..+|...++...+. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34466667777777777777777777766633111 2223333344455566677777766665541 1111001011
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 603 ACIVDLLGRANRLDEAVEL-IEGMPMEPTPIIWVALLNGCRIH------ANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+.+.++.|+....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 00000000 00000000011222222223333 7788889999999999998877777777766
Q ss_pred Hh
Q 003273 676 AN 677 (834)
Q Consensus 676 ~~ 677 (834)
.+
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 53
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.35 E-value=1.9 Score=43.14 Aligned_cols=79 Identities=10% Similarity=0.203 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhHHH
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVTLV 354 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~ 354 (834)
..++..++..+..+|+++.+...++++....+. |...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456788999999999999999999999998777 888999999999999999999999999875 58888887665
Q ss_pred HHHHh
Q 003273 355 SLLSG 359 (834)
Q Consensus 355 ~ll~a 359 (834)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.64 E-value=0.54 Score=30.44 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 667 SYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
No 278
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.43 E-value=21 Score=41.01 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=15.6
Q ss_pred HhhcCCHHHHHHHHHhCCCCC
Q 003273 609 LGRANRLDEAVELIEGMPMEP 629 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p 629 (834)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 567899999999999997767
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.37 E-value=1.7 Score=43.55 Aligned_cols=80 Identities=8% Similarity=0.128 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhh----CCCCCCCccchHh
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG----DVKVQGDGVSLVN 245 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~t~~~ 245 (834)
..++..++..+..+|+++.+...++++....+-|...|..+|.+|.++|+...|+..|+++.+ ..|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346788999999999999999999999998888999999999999999999999999999865 2477776655544
Q ss_pred HHHH
Q 003273 246 ALSA 249 (834)
Q Consensus 246 ~l~a 249 (834)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.35 E-value=27 Score=35.58 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=26.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-C--ChhHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCC
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQ-R--NVVSWTSLMTGYGM--HGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
+....+.++.+++.+++.+|.. . ....+..++..+.+ ......|...++.++...+.|.
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4444445556666666665551 1 22334444433311 1223455555555555444444
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=11 Score=34.18 Aligned_cols=88 Identities=18% Similarity=0.053 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~ 649 (834)
.-...++.+++..++..+. -+.|.. ++-..-+-.+.+.|++.+|+.+++++.. .|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3445667777777777775 455652 2333344456778888888888888742 2444555677777765543333
Q ss_pred HHHHHHHHHhcCC
Q 003273 650 GELAANRLLELES 662 (834)
Q Consensus 650 a~~~~~~~~~~~p 662 (834)
=...++.+++..|
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444555666655
No 282
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.24 E-value=10 Score=36.96 Aligned_cols=265 Identities=14% Similarity=0.183 Sum_probs=156.5
Q ss_pred CCCChhhHHHHHHHHH-HhCCChHHHHHHHHhcCCCCCCccch-----HHHHHHHHhcCChhHHHHHHHhhcccC-CCCc
Q 003273 386 SHPDDLMVINALIDMY-AKCKSVDVARVMFDAIAPKNRDVATW-----TVMIGSYSQNGGANDALALFPQMFQQD-KLVK 458 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~-~g~~ 458 (834)
+.+||+..-|..-+.- .+...+++|..-|+++.+.++.-.-| -.||..+.+.|++++.++.|.+|+.-= ..+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455555444322211 23457889999999887655544444 468899999999999999999986300 1111
Q ss_pred --CCcccHHHHHHHHhhhhhHHHHHHHHHHHHHh----CCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 003273 459 --PNAFTLSCALMACARLAALRFGRQIHAYVLRN----QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ------- 525 (834)
Q Consensus 459 --p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------- 525 (834)
-+..+.++++.-.+-+.+.+.-..++....+. .-+..--.+-+-|...|...|.+.+-.+++.++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 13345677777776666666555555443321 00001112335577778888888888877776641
Q ss_pred -CC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHH-----hcCCHHHHHHHHHHhHH
Q 003273 526 -RN-------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACS-----HSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 526 -~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~ 591 (834)
.| ...|..=|..|....+-.+...+|++.+.-. --|.+ ....+++-|. +.|.+++|..=|-+.-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 2356666777888888888888888876522 12333 3445566554 46788887765554444
Q ss_pred hcCCC--CCh---HHHHHHHHHHhhcCCHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 592 EFGIS--ARA---EHYACIVDLLGRANRLDEAVELIEGM---PM--EPTPIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 592 ~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~---~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
.|.-. |.. --|-.|.+++.+.|- .-|+.- |. .|.....+.|+.+|..+. +..|+++++.+
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd-----I~eFE~Il~~~ 329 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNND-----IIEFERILKSN 329 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhccc-----HHHHHHHHHhh
Confidence 44322 222 235567778887762 112111 33 355667888998887654 34455555543
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.23 E-value=0.71 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777888888888888888888774
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.18 E-value=1.3 Score=44.37 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=62.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGMP-ME-PTPIIWVALLNGCRIHA 645 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g 645 (834)
-.+-|.++|.+++|+..|...+ .+.| ++..+..-..+|.+..++..|+.-.+..- .. .-.-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556778888888888887655 4556 67777777778888888877776655442 11 11224444444555567
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 003273 646 NVELGELAANRLLELESEKD 665 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~ 665 (834)
+.++|.+-++.+++++|++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 78888888888888888743
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.61 E-value=15 Score=31.78 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
...-+.....+|+-+.-.+++.++.. .-+|++.....+..||.+.|+..++-+++.++-+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555666666666666666553 2355666666666677777777666666666654
No 286
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.47 E-value=50 Score=37.53 Aligned_cols=344 Identities=11% Similarity=0.046 Sum_probs=192.1
Q ss_pred HHHhcCChhHHHHHHHHHH--------HCCCCCCHhHHHH-----HHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCCh
Q 003273 324 GYAQRGHGHEALDVFRQMQ--------FCGLEPNVVTLVS-----LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390 (834)
Q Consensus 324 ~~~~~g~~~~A~~l~~~m~--------~~g~~pd~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (834)
++.+.-++++-+.+.++.. .-|+..+..-|.. ++.-+...+.+..+.++-..+... ... .
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p------~~~-~ 470 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP------ESQ-G 470 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc------ccc-c
Confidence 3445556666555555442 3366666555544 344455555666666655444221 111 1
Q ss_pred hhHHHHHHHHHHhCCC---hHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCc--CCcccHH
Q 003273 391 LMVINALIDMYAKCKS---VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK--PNAFTLS 465 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~---~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~--p~~~t~~ 465 (834)
..++.....-+.+..+ -+.+..+=+++...-...++|..+...-.+.|+++-|..+++.=...+..+. -+-.-+.
T Consensus 471 ~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 471 DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 4667777777766632 2334444444542224667888888888888999988888764332111110 1223455
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCC----------CccchhHHhHHHH---------HHHhcCCHHHHHHHHh--hcC
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQY----------EMLIPFVANCLID---------MYSRSGDIDTARVVFD--NLK 524 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~li~---------~y~k~g~~~~A~~~~~--~~~ 524 (834)
..|.-+...|+.+...++.-.+.+.-. .|....+|.-++. .|-. ++-..+...|. ...
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~ 629 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASY 629 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhh
Confidence 666777777777777666555443210 0011222222211 1111 12112221111 100
Q ss_pred -----CCChhHHHHHHHHHHHcCC---hHHH-------HHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 525 -----QRNVVSWTSLMTGYGMHGL---GDKA-------HWAFDQMRK-EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 525 -----~~~~~~~~~li~~~~~~g~---~~~A-------~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
.+-........+.+++... ..+| +.+.+.+.. .|..-...|.+-.+.-+...|+..+|.++-.+
T Consensus 630 ~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~ 709 (829)
T KOG2280|consen 630 AAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD 709 (829)
T ss_pred hhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh
Confidence 1111122223334444333 1122 222222221 23333455666667778888999999887654
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 589 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
. . .||...|---+.++...+++++-+++-+++. .+.-|.-...+|.+.|+..+|.+.+-++-.+.
T Consensus 710 F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------- 774 (829)
T KOG2280|consen 710 F----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------- 774 (829)
T ss_pred c----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH-------
Confidence 4 2 4788888888899999999999999988875 24556778889999999999988766553332
Q ss_pred HHHHHHHHhcCCchhHHHHHHHH
Q 003273 669 TLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 669 ~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
-...+|.+.|++.+|.+.--+-
T Consensus 775 -ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 775 -EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -HHHHHHHHhccHHHHHHHHHHh
Confidence 4678899999999998875443
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.37 E-value=0.3 Score=44.06 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=65.1
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCC
Q 003273 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 219 (834)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+.....++... ..-...++..+-+.|.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc------ccCHHHHHHHHHhcch
Confidence 4567777788888888888888877766778899999999999988888888877332 2344567777788888
Q ss_pred hhHHHHHHHHhh
Q 003273 220 AEGGLMLFARMT 231 (834)
Q Consensus 220 ~~~A~~~~~~m~ 231 (834)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 888888888764
No 288
>PRK09687 putative lyase; Provisional
Probab=87.46 E-value=36 Score=34.69 Aligned_cols=85 Identities=9% Similarity=0.098 Sum_probs=49.5
Q ss_pred HhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCC
Q 003273 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG----HEALDVFRQMQFCGLEP 348 (834)
Q Consensus 273 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p 348 (834)
+.+..+|..+....+..+...|.. ++...+..+... +|...-...+.++.+.|+. .+++.++..+.... |
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~ 103 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--K 103 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--C
Confidence 334467777888888888877753 344444444332 2555556667777777764 46777777764322 4
Q ss_pred CHhHHHHHHHhhhhh
Q 003273 349 NVVTLVSLLSGCASV 363 (834)
Q Consensus 349 d~~t~~~ll~a~~~~ 363 (834)
|...-...+.++...
T Consensus 104 d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 104 SACVRASAINATGHR 118 (280)
T ss_pred CHHHHHHHHHHHhcc
Confidence 444444444444443
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.32 E-value=1.3 Score=27.98 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566667777777777777777777776 4554
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.75 E-value=1.2 Score=28.76 Aligned_cols=28 Identities=18% Similarity=-0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888885554
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.53 E-value=2.1 Score=43.06 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhc
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRA 612 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 612 (834)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..=.+.... +.. -...|+.-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999888 778 899999999999999988877765554431 111 122333333333344
Q ss_pred CCHHHHHHHHHhC-CCCCCHH
Q 003273 613 NRLDEAVELIEGM-PMEPTPI 632 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p~~~ 632 (834)
|+..||.+-++.. ..+|+..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 5666666655554 4566643
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.36 E-value=22 Score=36.41 Aligned_cols=93 Identities=13% Similarity=0.302 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCC-------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCCC-h-hHHHHHHHHHHhcCC-
Q 003273 513 IDTARVVFDNLKQ-------RNVVSWTSLMTGYGMHGL----GDKAHWAFDQMRKEGLAPD-G-VTFLVLLYACSHSGM- 578 (834)
Q Consensus 513 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~- 578 (834)
...|..+|+.|.+ ++-..+.+|+.. ..++ .+.+..+|+.+.+.|+..+ . .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3455556666652 333445555443 2222 4567778888888888775 3 334444433333222
Q ss_pred -HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 579 -VDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 579 -~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
+..+.++++.+.+. ++++...+|..++-+
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 44677788888654 888888887765443
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.02 E-value=33 Score=34.20 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=50.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...|...|.+.+|.+..++++.++|-+...+-.|.++|+..|+--.+.+-+..+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34588999999999999999999999999999999999999998888887777753
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.80 E-value=22 Score=40.86 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh-------hHHHHHHHHHHHCCCCCCHhH--H
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG-------HEALDVFRQMQFCGLEPNVVT--L 353 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~pd~~t--~ 353 (834)
--++|-.+.|+|++++|.++..+.... .......+-..+..|....+. ++...-|++..+.....|++- .
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 346677788888998888888555433 333456677777777665322 345555666665544335542 2
Q ss_pred HHHHHhhhhhc-hh-hhhhHHHHHHHHHhhhcCCCC-----CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccc
Q 003273 354 VSLLSGCASVG-AL-LLGKETHCYTIKRVLSVDGSH-----PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426 (834)
Q Consensus 354 ~~ll~a~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 426 (834)
-.+|..|--.. .. +.+..+-+++.-+..-..... ..+..++..|=+...+.|. ..|.. +.++..
T Consensus 193 Y~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~----~~~p~~ 263 (613)
T PF04097_consen 193 YKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA----GSNPLL 263 (613)
T ss_dssp HHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT----------
T ss_pred HHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc----chhHHH
Confidence 22333332211 11 111111111111100000011 0112222222111111110 01110 112222
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHH
Q 003273 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506 (834)
Q Consensus 427 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 506 (834)
| ...+.-.|+++.|++.+.+. .+...|.+.+...+.-+.-....+ .....+.......+.+.-+..||..
T Consensus 264 Y---f~~LlLtgqFE~AI~~L~~~----~~~~~dAVH~AIaL~~~gLL~~~~---~~~~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 264 Y---FQVLLLTGQFEAAIEFLYRN----EFNRVDAVHFAIALAYYGLLRVSD---SSSAPLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp H---HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred H---HHHHHHHhhHHHHHHHHHhh----ccCcccHHHHHHHHHHcCCCCCCC---ccccceeeecCCCCCCcCHHHHHHH
Confidence 2 34556789999999998872 446667777666655443222111 1112221111110122345667777
Q ss_pred HHh---cCCHHHHHHHHhhcC
Q 003273 507 YSR---SGDIDTARVVFDNLK 524 (834)
Q Consensus 507 y~k---~g~~~~A~~~~~~~~ 524 (834)
|.+ ..+..+|.+.|--+.
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 775 456777777776665
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.46 E-value=30 Score=31.83 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+.++.+...++.|+...|..+|..+.+.|++. .+..++..++-+|.......+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 345556667788888888888888888888754 455566667777776665444
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.21 E-value=3.2 Score=37.50 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=38.7
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...++.+.++.++.-+.-+.|+.+..-..-++++...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45567777777777777777777777777777777777777777777776554
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.84 E-value=35 Score=32.04 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH-----HHHHHhhcCCHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTF--LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC-----IVDLLGRANRLDEA 618 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A 618 (834)
+.....+++....-+...-++ ..+...+...|++++|...++.... . |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555556666653211111222 2334457888999999998886652 1 33333333 44567788999999
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 619 VELIEGMPMEPTPII--WVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+..++... .++-.. -..-...+...|+.++|+..|++.++.+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998875 232222 222334488899999999999999998754
No 298
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.78 E-value=42 Score=33.76 Aligned_cols=92 Identities=12% Similarity=-0.078 Sum_probs=45.4
Q ss_pred HHhcCChhHHHHHHHHH----HHCCCCCCHhHHHHHHHhhhhhchhh-hhhHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 003273 325 YAQRGHGHEALDVFRQM----QFCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALID 399 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m----~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 399 (834)
+.+.|+...|-++-.-| .+.+..+|......++..+.....-+ .-..+...+++.. ...+.-..|+.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 34444444444433332 23455556555555554444333222 2334444445443 222234457788888999
Q ss_pred HHHhCCChHHHHHHHHhc
Q 003273 400 MYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~ 417 (834)
.|.+.|++.+|+.-|-.-
T Consensus 99 ~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 999999999999877543
No 299
>PRK09687 putative lyase; Provisional
Probab=84.69 E-value=49 Score=33.69 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCCh----hHHHHHHHhhc
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA----NDALALFPQMF 451 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~ 451 (834)
+|..+....+..+.+.|..+-...+..-+. .+|...-..-+.++.+.|.. .+++.++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 455555566666666665433333333222 44555555556666666653 35666666653
No 300
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.97 E-value=62 Score=34.24 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCC-CCccc----hHHHHHHHHh---cCChhHHHHHHHhhcccCCCCcCCcccHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKN-RDVAT----WTVMIGSYSQ---NGGANDALALFPQMFQQDKLVKPNAFTLSC 466 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ 466 (834)
-.|+-.|....+++...++.+.+.... .+... -....-++-+ .|+.++|++++..++. ..-.++..|+..
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~--~~~~~~~d~~gL 222 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE--SDENPDPDTLGL 222 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh--ccCCCChHHHHH
Confidence 355556888899999999999887432 12111 1123344555 7899999999988666 334455555544
Q ss_pred HH
Q 003273 467 AL 468 (834)
Q Consensus 467 ll 468 (834)
+-
T Consensus 223 ~G 224 (374)
T PF13281_consen 223 LG 224 (374)
T ss_pred HH
Confidence 33
No 301
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.73 E-value=44 Score=32.32 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHHHhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 602 YACIVDLLGRA-NRLDEAVELIEGMP-----MEPTPIIWVALLNG---CRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 602 ~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+-.+.+.|... .+++.|+..++... .+.+...-..++.+ -...++++.|+.+|+++....-+|+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33455555544 55666666665541 11222223333333 3456788899999999877655544
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.69 E-value=4 Score=36.20 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=45.9
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
...++.+.++.++..+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888888999988888888999999999999999998887654
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.57 E-value=15 Score=34.35 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=27.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLKQRN------VVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
.+..+.+.|.+.|++++|.+.|.++.+.. +..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555555555555554221 1233344444444455555444444443
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.49 E-value=15 Score=40.23 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHcCCCHHHHHHHHHHh
Q 003273 288 TGYSRIGSFEDAFALFKKM 306 (834)
Q Consensus 288 ~~~~~~g~~~~A~~l~~~m 306 (834)
-+|...|+++++.+++.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 3566678888887776543
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.18 E-value=6.1 Score=36.37 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc----hhHHHHHHHHH
Q 003273 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRW----KDVARIRSLMK 692 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~----~~a~~~~~~m~ 692 (834)
+++|+.-++.++.++|+...++..++++|...|.. .+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 45677778888999999999999999999887752 34555555543
No 306
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.13 E-value=77 Score=36.02 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=58.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVT---FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
|...+..+.|++.|++.-+ +.|+..+ +..|+.+-.+ .++...++-. + | -.|-.+++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq~-I----g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQQ-I----G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHHH-H----H--------HHHHHHhhccch
Confidence 3344555677888888777 7776433 4444443221 1222222110 0 1 234556788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
++.-.++++-. ..+.+-...+|+..|.+++++++++.|.
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 88777666322 2345555667888899999999998874
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.62 E-value=1.4 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHhcCCHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a 582 (834)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444443
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.57 E-value=26 Score=32.77 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCC----hH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF--GISAR----AE 600 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~ 600 (834)
..|..+..-|.+.|+.++|++.|.++.+....|. ...+..++..+...+++..+..+..+...-. +-+++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3677888999999999999999999999766666 3457888888999999999999888765321 11122 22
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
.|..+. +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 33468999998888766
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.45 E-value=3 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666677777776666666
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.25 E-value=41 Score=30.95 Aligned_cols=29 Identities=0% Similarity=-0.085 Sum_probs=14.7
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHccCCCc
Q 003273 123 FLQMMRRGWHPDEYTFPFVLKACGELPSS 151 (834)
Q Consensus 123 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 151 (834)
.+.+...+++|+...+..+++.+.+.|..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344445555555555555555555543
No 311
>PRK10941 hypothetical protein; Provisional
Probab=81.54 E-value=9.8 Score=38.25 Aligned_cols=62 Identities=18% Similarity=0.057 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..++|-.++...++++.|.++.++++.+.|+++.-+--.+-+|.+.|.+..|..=++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45677778999999999999999999999999988888999999999999999988777654
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.00 E-value=53 Score=31.36 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=86.4
Q ss_pred CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHH--HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM--IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 387 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
.|.-+.++|-|.-.+...|+++.|.+.|+...+.+|. .-|..+ .-++.--|++.-|.+-|.+.-+. .|+.. |
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~----D~~DP-f 168 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD----DPNDP-F 168 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhc----CCCCh-H
Confidence 4555678888888888999999999999988755442 112222 12233457788777776666541 22111 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCC
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR-VVFDNLKQRNVVSWTSLMTGYGMHGL 543 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~ 543 (834)
+.++-.+.+..++ ..+|. .+.++....|..-|..-|..|-- |+
T Consensus 169 ----------------R~LWLYl~E~k~d-------------------P~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gk 212 (297)
T COG4785 169 ----------------RSLWLYLNEQKLD-------------------PKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GK 212 (297)
T ss_pred ----------------HHHHHHHHHhhCC-------------------HHHHHHHHHHHHHhccHhhhhHHHHHHHH-hh
Confidence 1122223333222 22232 22233333444445444444332 22
Q ss_pred hHHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 544 GDKAHWAFDQMRKEGLAPD-------GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
.. ...+|++++.- -.-+ ..||-.+..-+...|++++|..+|+..+.
T Consensus 213 iS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 213 IS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 12233333331 1111 35778888888889999999998887664
No 313
>PRK12798 chemotaxis protein; Reviewed
Probab=80.67 E-value=83 Score=33.46 Aligned_cols=175 Identities=23% Similarity=0.259 Sum_probs=117.5
Q ss_pred hHHHHHHHh--cCCHHHHHHHHhhcC----CCChhHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCCChh----HHHHH
Q 003273 501 NCLIDMYSR--SGDIDTARVVFDNLK----QRNVVSWTSLMTGYG-MHGLGDKAHWAFDQMRKEGLAPDGV----TFLVL 569 (834)
Q Consensus 501 ~~li~~y~k--~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~l 569 (834)
+.|+++..+ .|+.++|.+.+..+. .+....+-+|+.+-. ...+..+|+++|++..- .-|-.. ....-
T Consensus 114 ~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRs 191 (421)
T PRK12798 114 QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRS 191 (421)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHh
Confidence 444444332 699999999999887 345556777776644 45679999999999887 567532 34444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH-HHHHHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC-IVDLLGR---ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
+......|+.+++..+-......|...|-...|.. .+..+.+ .-..+.-..++..|.-.--..+|..+...-...|
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~G 271 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDG 271 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcC
Confidence 45677899999998888877777777776544432 2333333 3344455556666652223557888888889999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
+.+.|..+.+++..+.+. ...-...+..|...
T Consensus 272 k~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 272 KTELARFASERALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred cHHHHHHHHHHHHHhccC-CCcchHHHHHHHHH
Confidence 999999999999998643 33334455555433
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.42 E-value=9.8 Score=27.20 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 003273 667 SYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGY 743 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~ 743 (834)
....++-.+.+.|++++|++..+.+.+. +|...+.......+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888899999999999999999863 34444444445556677777763
No 315
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.15 E-value=52 Score=30.20 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CChh-HHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003273 505 DMYSRSGDIDTARVVFDNLKQ----RNVV-SWTSLMTG--YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~~----~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 577 (834)
......|+..+|...|+++.. |-+. -..-|=.+ +..+|-++......+.+-..|-.--...-..|.-+-.+.|
T Consensus 102 t~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag 181 (221)
T COG4649 102 TLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG 181 (221)
T ss_pred HHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc
Confidence 345567778888888887762 2111 11112222 3456777777666665544332222334455666677888
Q ss_pred CHHHHHHHHHHhHHh
Q 003273 578 MVDQGLKYFDSMSKE 592 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~ 592 (834)
++.+|.+.|..+..+
T Consensus 182 d~a~A~~~F~qia~D 196 (221)
T COG4649 182 DFAKAKSWFVQIAND 196 (221)
T ss_pred chHHHHHHHHHHHcc
Confidence 888888888877654
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.84 E-value=3 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=23.9
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 666 GSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999888653
No 317
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.82 E-value=83 Score=32.33 Aligned_cols=126 Identities=11% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHHhhcccCCCCcCCcccHHHHHHHHhh------hhhHHHHHHHHHHHHHhCCC--ccchhHHhHHHHHHHhcCC-
Q 003273 442 DALALFPQMFQQDKLVKPNAFTLSCALMACAR------LAALRFGRQIHAYVLRNQYE--MLIPFVANCLIDMYSRSGD- 512 (834)
Q Consensus 442 ~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~y~k~g~- 512 (834)
+.+.+++.|.+ .|++-+..+|.+.+..... ......++.++..|++...- .++...+..|+.+ ..++
T Consensus 80 ~~~~~y~~L~~--~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 80 EVLDIYEKLKE--AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHH--hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556666666 6666666666554333322 12455667777777764321 1222333333332 2222
Q ss_pred ---HHHHHHHHhhcC-----CCCh-hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003273 513 ---IDTARVVFDNLK-----QRNV-VSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAPDGVTFLVLLY 571 (834)
Q Consensus 513 ---~~~A~~~~~~~~-----~~~~-~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 571 (834)
.+.++..|+.+. +.|. .....++........ ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 234444454443 2233 233333322221111 5588999999999999988776655543
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.50 E-value=18 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=10.5
Q ss_pred CcHHHHHHHHHhcCCCChhHHHHH
Q 003273 263 GMMEEAKKVFERMKVKDVVSWNAM 286 (834)
Q Consensus 263 g~~~~A~~~~~~~~~~d~~~~~~l 286 (834)
|++++|..+.+....||...|-+|
T Consensus 53 G~Yq~Al~l~~~~~~pdlepw~AL 76 (115)
T TIGR02508 53 GDYQSALQLGNKLCYPDLEPWLAL 76 (115)
T ss_pred chHHHHHHhcCCCCCchHHHHHHH
Confidence 444444444444444444444443
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.46 E-value=24 Score=30.85 Aligned_cols=63 Identities=13% Similarity=0.027 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhc---CcHHHHHHHHHHHHh-cCCCCC-chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 631 PIIWVALLNGCRIH---ANVELGELAANRLLE-LESEKD-GSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 631 ~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
..+--++.++.... .++.+++.+++.+.+ -.|+.. .....|+-.+++.|+|+.++++.+...+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33334444444333 356677777777776 444433 3445566677888888888888777765
No 320
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.27 E-value=1.2e+02 Score=33.81 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=52.5
Q ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHH
Q 003273 136 YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV-FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAY 214 (834)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 214 (834)
..+..++.---...+...++.++..++.. -|-. --|......=.+.|..+.+.++|++-...=+-.+..|.....-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34455555444444445555555555532 2333 24555555556778888888888776543222555566655444
Q ss_pred H-hCCChhHHHHHHHHhhhC
Q 003273 215 A-QSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 215 ~-~~g~~~~A~~~~~~m~~~ 233 (834)
. ..|+.+...+.|+.....
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~ 143 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSY 143 (577)
T ss_pred hccCCCHHHHHHHHHHHHHh
Confidence 3 345666666666666543
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.27 E-value=68 Score=31.07 Aligned_cols=99 Identities=11% Similarity=0.302 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH---HHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHhc
Q 003273 577 GMVDQGLKYFDSMSKEFGISA-RAEHYACIV---DLLGRANRLDEAVELIEGM---PMEPTPIIWVA---LLNG--CRIH 644 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~---~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~~~~ 644 (834)
.++++|+..|+..-+-|..+. +...--|++ +.-+..|++.+|+++|++. ....+..-|.. ++.+ |...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 445555555555543222221 122222333 3345678889999998876 23333444432 2222 4444
Q ss_pred -CcHHHHHHHHHHHHhcCCCCCc--hHHHHHHHH
Q 003273 645 -ANVELGELAANRLLELESEKDG--SYTLLSNIY 675 (834)
Q Consensus 645 -g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~ 675 (834)
.|.-.+..++++..+++|.-.. -+..|-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 6777888999999999997443 334444433
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.07 E-value=75 Score=33.52 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESE----KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
....+|..+...++++|+++.|..++.++.+..+. .+.....-+..+-..|+-++|....+...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999987522 4567777889999999999999998887763
No 323
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.86 E-value=1.4e+02 Score=34.55 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 542 GLGDKAHWAFDQMRKEG-LAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
.+.+.|..++.+..... ..+. ......+.......+...++...++.... -..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 34566666666653322 2222 12222332222222224455555544321 112333333334444466777777
Q ss_pred HHHHHhCCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003273 619 VELIEGMPME--PTPIIWVALLNGCRIHANVELGELAANRLL 658 (834)
Q Consensus 619 ~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 658 (834)
...|..|+.. -...-.-=+..+....|+.+.|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777766421 111111123334444677777777777663
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.39 E-value=19 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
-++.+-++.+....+-|++....+.+.||.+.+++..|.++|+.+..+.+. +...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 355666677777778999999999999999999999999999988644333 4445665554
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.76 E-value=3.6 Score=24.22 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=19.6
Q ss_pred chHHHHHHHHHhcCCchhHHHHHH
Q 003273 666 GSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988764
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.60 E-value=20 Score=29.48 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
+..+-++.+....+-|++....+.|.||.+.+++..|.++|+.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666667788999999999999999999999999999887654433 336766654
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.38 E-value=35 Score=30.46 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=35.7
Q ss_pred hCCChhHHHHHHHhcCCCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhC
Q 003273 182 RCDTLSYARQLFDEMFQPGI--CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 182 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 233 (834)
..++++++..+++.|.--.| +...++.. ..+...|++++|+++|++....
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 47888889988888765443 34444443 3457888999999999988754
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.18 E-value=5.1 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
|..+...+...|+.+.|...+++.+++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555544
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.84 E-value=4.4 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
+|..+...|.+.|+.++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766665
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.62 E-value=6 Score=24.43 Aligned_cols=26 Identities=8% Similarity=-0.069 Sum_probs=14.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 638 LNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
..++...|+.+.|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33445555666666666666655554
No 331
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.39 E-value=1.9 Score=43.62 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 612 ANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.|.+++|++.|... +..| ....+..-.+++.+.+....|++-+..+++++|+...-|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555444 2222 233444444455566666666777777777777766666666666667777777777776
Q ss_pred HHHhcCCc
Q 003273 690 LMKHTGVK 697 (834)
Q Consensus 690 ~m~~~~~~ 697 (834)
...+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 66665544
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.25 E-value=88 Score=30.83 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCccchHHHHHH-HHhcCChhHHHHHHHhhcccCCCCcCCcc-----cHHHHHHHHhhhhhHHHHHHHHHHHHH---hC
Q 003273 421 NRDVATWTVMIGS-YSQNGGANDALALFPQMFQQDKLVKPNAF-----TLSCALMACARLAALRFGRQIHAYVLR---NQ 491 (834)
Q Consensus 421 ~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~g~~p~~~-----t~~~ll~a~~~~~~~~~a~~~~~~~~~---~~ 491 (834)
+||+..-|.--.+ -.+...+++|+.-|.+.++ +.|... .+-.++....+.+.+++....+..+.. +.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVle----lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLE----LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHh----cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4666543332111 1244588999999999877 333322 223345555555555555444433321 11
Q ss_pred C-CccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHH----HHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 492 Y-EMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSW----TSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 492 ~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
+ ...+....|++++..+.+.+.+--...++.-. .+|...| +-|...|...|.+.+..++++++.+
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 1 00223334555555555555444444443322 1222222 3344555555555555555555554
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.07 E-value=6.7 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
+.-++.+.|+.+.|.+..+.+++++|+|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4456889999999999999999999987644
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.32 E-value=26 Score=38.60 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHH
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 479 (834)
...+.|+++.|.++-.+.. +..-|..|..+..+.|++..|.+.|.+... |.+++-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhH
Confidence 3456677777777665533 567788888888888888888888877755 4455555555555554
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhc
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 523 (834)
-..+-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g~~-------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN-------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhccc-------chHHHHHHHcCCHHHHHHHHHhc
Confidence 44454555555543 33344455556666665555443
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.65 E-value=1.8e+02 Score=33.65 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=86.1
Q ss_pred HHHHHh-hCCCchhHHHHhcccC---CC-Ccc---hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCC--CC--cccHHH
Q 003273 73 LIAAYV-SHNAPSPALSLLQRIS---PS-PFS---VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH--PD--EYTFPF 140 (834)
Q Consensus 73 l~~~~~-~~g~~~~A~~~f~~~~---~~-~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~--~~t~~~ 140 (834)
+...|. ...+++.|...+++.. ++ +.. ...-..++..+.+.+... |....++..+.--. -+ ...|..
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 344443 3567788888777641 22 210 012234555566555544 88888776653211 11 222333
Q ss_pred H-HHHHccCCCchHHHHHHHHHHHhC---CCCchhHHHHHHHHHH--hCCChhHHHHHHHhcCC----------CCCCCc
Q 003273 141 V-LKACGELPSSRCGSSVHAVICSSG---FDSNVFVCNALMAMYA--RCDTLSYARQLFDEMFQ----------PGICDI 204 (834)
Q Consensus 141 l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~Li~~~~--~~g~~~~A~~~~~~m~~----------~~~~~~ 204 (834)
+ +..+...++...|.+.++.+...- ..+..++.-.++.+.. +.+..+++.+..+++.. ..+|-.
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 2 222223368888888887776542 2455566655555443 45656666666665411 122455
Q ss_pred chHHHHHHH--HHhCCChhHHHHHHHHhhh
Q 003273 205 VSWNTIVAA--YAQSGDAEGGLMLFARMTG 232 (834)
Q Consensus 205 ~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 232 (834)
.+|..++.. +...|+++.+...++++.+
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777654 4567777777777666653
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.61 E-value=40 Score=32.20 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHhh
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLSGC 360 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~ 360 (834)
.+..++.+.+.+.+++|+...++-.+..+. |...-..++..++-.|++++|+.-++-.-.. ...+-..+|..++.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 345567778888999999998887777666 7788888999999999999998877766543 2334456777777654
Q ss_pred h
Q 003273 361 A 361 (834)
Q Consensus 361 ~ 361 (834)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.55 E-value=29 Score=34.99 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=65.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK-QRN--------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 566 (834)
.......+++.-....+++++...+-+.. .|+ ..+|-.++ -.-++++++.++..=++-|+-||..|+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccchhhH
Confidence 33334555655566677888887776665 222 22333332 233677899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
..++..+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999998888776654
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.68 E-value=3.9 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 667 SYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.61 E-value=8.5 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666665543
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.54 E-value=93 Score=29.86 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR----AEHYACI 605 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 605 (834)
.+..++.+.+.+...+++...++-++ -+|. .-+-..++..++-.|++++|..-++... .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34556777788888899988888777 4664 5566677778888999999988777654 33443 4455555
Q ss_pred HHHHhhcCCHHHHH-HHHHhC--C---CCCCHHHHHH-HHHH--HHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 606 VDLLGRANRLDEAV-ELIEGM--P---MEPTPIIWVA-LLNG--CRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 606 ~~~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~-ll~~--~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
+++ +.+. ++|..- | -.| ...|-. |+.+ |...|.-+.....-++.++..|..
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 543 2222 233322 2 113 334544 4444 333345555666677778877753
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.13 E-value=21 Score=33.73 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCchhH
Q 003273 611 RANRLDEAVELIEGMPMEP--TPIIWVALLNGCRIHANVELGELAANRLLELESE----KDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a 684 (834)
+.|+ ++|.+.|-.+.-.| +....-..+..|....|.+.++..+-+++++.+. |+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344 56676666663222 3334444555566678899999999999987432 578999999999999999987
Q ss_pred H
Q 003273 685 A 685 (834)
Q Consensus 685 ~ 685 (834)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 342
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.78 E-value=92 Score=30.51 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=58.1
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 531 WTSLMTGYG--MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 531 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
|...+.|+. .++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++.+. ..-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 444455543 355666666665221 1222211 135666666778888888877653 112223333333444
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
..+|.+.||..+.++.+.+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 455788888888877753222457777777766544
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.02 E-value=1.6e+02 Score=31.16 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=45.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQ------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
...+.-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34557788999999999999999998652 2334666677776777888888777777665
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.92 E-value=2.1e+02 Score=32.61 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=69.7
Q ss_pred cCChHHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 541 HGLGDKAHWAFDQMRK-------EGLAPDGVTFLVLLYACSHSG-----MVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
..+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++....+ .| .|+....-...-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHH
Confidence 3445555555555444 33 2223444444554432 34556666665542 12 2332222222222
Q ss_pred Hhh-cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCch
Q 003273 609 LGR-ANRLDEAVELIEGMPM--EPTPIIWVALLNGCR--IHANVELGELAANRLLELESEKDGSYTLLSNIYANA-GRWK 682 (834)
Q Consensus 609 ~~~-~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~ 682 (834)
.+. ..+...|.++|..... .++...+-++...+- ...+.+.|...++++-+.++ +.+...+...+.-. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcccccc
Confidence 222 1345566666665531 222333322222221 23367777777777777763 33334444333222 7777
Q ss_pred hHHHHHHHHHhcCCc
Q 003273 683 DVARIRSLMKHTGVK 697 (834)
Q Consensus 683 ~a~~~~~~m~~~~~~ 697 (834)
.+.-.+..+.+.|.+
T Consensus 415 ~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 415 TALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777766666665543
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.03 E-value=12 Score=34.43 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC----HHHHHHHHHHhHHhc----CCCCChHHHHHHHHHH
Q 003273 544 GDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM----VDQGLKYFDSMSKEF----GISARAEHYACIVDLL 609 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----~~~a~~~~~~m~~~~----~~~p~~~~~~~l~~~~ 609 (834)
+++|+.-|++.+. +.|+ ..++..+..++...+. ..+|..+|++....+ ..+|+.+.|..-+++.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4556666677777 7888 6778888887766442 223333333332111 2455555555444443
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.40 E-value=2.4e+02 Score=32.61 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 319 SAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 319 ~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
..|...|...+++.+|+.++-..+.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 3477888888999999888877654
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.55 E-value=47 Score=31.45 Aligned_cols=74 Identities=8% Similarity=0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCChHHHHHHHHHHhhcCCHHHHH
Q 003273 545 DKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF--GISARAEHYACIVDLLGRANRLDEAV 619 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 619 (834)
++|...|-++...+.--++.....|. .|....+.+++++++....+-+ +-.++++.+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46777777776665443444343443 3334567777777776665432 22456677777777777777777664
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.46 E-value=11 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=13.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHh
Q 003273 501 NCLIDMYSRSGDIDTARVVFD 521 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~ 521 (834)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666677777666654
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.24 E-value=4.3e+02 Score=35.11 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C-----CCCCHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-----P-----MEPTPI 632 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~-----~~p~~~ 632 (834)
..+|....+.+...|.++.|....-...+. + .| ..+--....+...|+-..|+.++++. + .++.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 456777777788888888888776655431 2 33 33555666777888888888877654 1 111122
Q ss_pred HHHHHHHH--------H-HhcCc--HHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 633 IWVALLNG--------C-RIHAN--VELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 633 ~~~~ll~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
.-+.++.. + ...|+ .+.-.+.|..+.+..|+....|..++
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 22222221 1 12233 33456677788888886666555555
No 350
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=84 Score=30.67 Aligned_cols=88 Identities=14% Similarity=-0.001 Sum_probs=61.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHHH--------HHHH---HHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 606 VDLLGRANRLDEAVELIEGM---------PMEPTPIIWVA--------LLNG---CRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~--------ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.+-+.+.|++.||..-|.++ ..+|...-|-. +++. +...|++-++++-...++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 33455666666665555432 23455444422 2333 3456788888888889999999999
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 666 GSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
-+|..-+.+.+..=+..+|..-+....+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999999988888788888888877765
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.56 E-value=69 Score=35.31 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=65.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC-C-CChh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLK-Q-RNVV---SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~-~-~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 575 (834)
..|+.-|.+++++++|..++..|. . -... +.+.+.+.+.+..-..+....++.++..=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 467788999999999999999997 1 1222 2333344444444445555555555544333321111111111111
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
-=.+-|+++|. -+.|.+++++|..+--... +...+.-+-..-...|+.+.|.
T Consensus 492 -~V~~~aRRfFh--------------------hLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARRFFH--------------------HLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHHHHH--------------------HHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 01122333333 3446788888888776665 2223333333344556666554
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.55 E-value=17 Score=35.10 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 003273 613 NRLDEAVELIEGM-PMEPTPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 690 (834)
.++++|+..+.+. ...|... .|+.=+-.+.+..+++.+..-..+++++.|+..-....|+........+++|+.++.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445555544433 3456653 4444444556677888888888888888888888888888888888888888888877
Q ss_pred HHh
Q 003273 691 MKH 693 (834)
Q Consensus 691 m~~ 693 (834)
...
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 743
No 353
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.53 E-value=27 Score=33.89 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHH-------HHHhcCC--C----CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAAN-------RLLELES--E----KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~-------~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+..+--+.+.|+..|+.+.....++ ++.+.+. . .......++.++.+.|++++|.+.+..+...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3456666677888887555444444 4444332 1 2356778999999999999999999998764
No 354
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.45 E-value=9.3 Score=34.26 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=59.3
Q ss_pred HHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH
Q 003273 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435 (834)
Q Consensus 356 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~ 435 (834)
++..+.+.+.......++..+... +...+..+.+.|+..|++.++.++..++++... ..-...++..+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~------~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-----~yd~~~~~~~c~ 81 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE------NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-----NYDLDKALRLCE 81 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT------STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-----SS-CTHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc------ccccCHHHHHHHHHHHHhcCCchHHHHHccccc-----ccCHHHHHHHHH
Confidence 345555566666666677777665 556678899999999999988888888877433 144456677777
Q ss_pred hcCChhHHHHHHHhhcc
Q 003273 436 QNGGANDALALFPQMFQ 452 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~ 452 (834)
+.|.+++|.-++.++-.
T Consensus 82 ~~~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKLGN 98 (143)
T ss_dssp TTTSHHHHHHHHHCCTT
T ss_pred hcchHHHHHHHHHHccc
Confidence 77888888887777644
No 355
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.66 E-value=28 Score=35.07 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC---ccchH-HHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD---VATWT-VMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
|.+....+...++..-....+++++...+-++... |+ ...|+ ..+.-++-.-++++++.++..=++ -|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs-~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIq--YGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS-PNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQ--YGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcC-cchhhhccccHHHHHHHHHccChHHHHHHHhCcch--hccccch
Confidence 55666666677777777788899998887776532 21 11111 112223334467799999988888 8899999
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 003273 462 FTLSCALMACARLAALRFGRQIHAYVLRNQ 491 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 491 (834)
+|+..+++.+.+.++...+.++...++...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999888888877766543
No 356
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.61 E-value=15 Score=39.28 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=62.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhH
Q 003273 607 DLLGRANRLDEAVELIEGM-PMEPTPIIWVALL-NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 684 (834)
+-+.+.+.++.|..++.++ ..+||-..|-+.= .++.+.+++..|..-+.++++++|.....|+.-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3344566677777777665 4566654443333 5677788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 003273 685 ARIRSLMKH 693 (834)
Q Consensus 685 ~~~~~~m~~ 693 (834)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888776543
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.48 E-value=15 Score=29.80 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45667777888888888888888888888888888887777654
No 358
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.25 E-value=3.8e+02 Score=32.77 Aligned_cols=183 Identities=7% Similarity=-0.103 Sum_probs=92.2
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
.++.+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 4555555555655544321 12234444556666655666666665544322 12222 2455555555555665
Q ss_pred hcCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 003273 575 HSGMVDQ-GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653 (834)
Q Consensus 575 ~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 653 (834)
..+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+...+|..+-...+.++...+. +.+...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 2333333332 356667777777788777765554444444335566566666666666654 234444
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 654 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+..+++ +| +...-..-+.++.+.+.-..+...+....
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 444443 22 34444455555555422334555554443
No 359
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=60.56 E-value=52 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=35.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHH
Q 003273 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671 (834)
Q Consensus 624 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 671 (834)
.+..-|++.+..+-+.+|++-+|+..|.++++-+...-..+...|-.+
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 344568888999999999999999999999987775443334445443
No 360
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.06 E-value=56 Score=27.04 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=33.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 624 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
.+..-|++.+..+.|.+|++.+|+..|.++++-+...-.+....|-.+.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3445588999999999999999999999999988776544444555443
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.10 E-value=82 Score=33.76 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=23.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
...|+++.+...+...... +.....|...++...-+.|++++|...-.-|.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 3445555555444443321 22234444444444445555555555444443
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.78 E-value=47 Score=31.21 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHhhcCC--C------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 003273 507 YSRSGDIDTARVVFDNLKQ--R------NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSG 577 (834)
Q Consensus 507 y~k~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 577 (834)
+.+.|++++|..-|..... | -.+.|..-..++.+.+.++.|+.-..+.++ +.|. ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhh
Confidence 4556666666666665541 1 123444445556666666666666666666 4443 222333334566666
Q ss_pred CHHHHHHHHHHhH
Q 003273 578 MVDQGLKYFDSMS 590 (834)
Q Consensus 578 ~~~~a~~~~~~m~ 590 (834)
.+++|+.=|..+.
T Consensus 183 k~eealeDyKki~ 195 (271)
T KOG4234|consen 183 KYEEALEDYKKIL 195 (271)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666666554
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.56 E-value=24 Score=27.56 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
+....++|+..|....++..-.|+ ..++.+++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666544222222 23455666666666666666554
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.53 E-value=17 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 669 TLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 669 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..|+.+|...|+.+.|+++.+.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999887543
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.40 E-value=1.3e+02 Score=31.95 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=48.4
Q ss_pred CHHHHHHHHH---HHHhcCcHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchhHHHHHHHHHh
Q 003273 630 TPIIWVALLN---GCRIHANVELGELAANRLLELESE-KDGSYTLLSNIYA-NAGRWKDVARIRSLMKH 693 (834)
Q Consensus 630 ~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 693 (834)
|...|.+|.. ...+.|-+..|.+..+-++.++|. |+-.-...++.|+ +.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455555544 467889999999999999999999 8887777888775 56777767777666544
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.14 E-value=1.8e+02 Score=27.47 Aligned_cols=84 Identities=20% Similarity=0.056 Sum_probs=58.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF-----LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 610 (834)
..+...|++++|...++.... .|-...+ ..|.+.....|.+|+|+..++....+ +. .......-.|+|.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cH--HHHHHHHhhhHHH
Confidence 456778999999999888775 2333333 33445677889999999998866422 22 2223444678899
Q ss_pred hcCCHHHHHHHHHhC
Q 003273 611 RANRLDEAVELIEGM 625 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~ 625 (834)
..|+-++|+.-|++.
T Consensus 171 ~kg~k~~Ar~ay~kA 185 (207)
T COG2976 171 AKGDKQEARAAYEKA 185 (207)
T ss_pred HcCchHHHHHHHHHH
Confidence 999999999998876
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.66 E-value=23 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
|..+...+...|++++|...|++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44445555555555555555555544
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.04 E-value=1.9e+02 Score=30.95 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=60.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHH--hcCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHhhcC
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGV--TFLVLLYACS--HSGMVDQGLKYFDSMSKEFGI-SARAEHYACIVDLLGRAN 613 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~~g 613 (834)
...+++..|.++|+++.+. +.++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3567888888888888876 555543 3344444433 456677888888876543111 011223333333322222
Q ss_pred CHHHHHHHHHhCCCCCC-HHHHHHHHHHHH--hcCcHHHHHHHHHHHHhc
Q 003273 614 RLDEAVELIEGMPMEPT-PIIWVALLNGCR--IHANVELGELAANRLLEL 660 (834)
Q Consensus 614 ~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 660 (834)
.+....+....-..++. ..+..-+.++-+ ..|+++.|..-+-+++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22222222211111111 223444444543 367888887776666664
No 369
>PF15469 Sec5: Exocyst complex component Sec5
Probab=54.74 E-value=1.9e+02 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
.-|.-|...|+++.+...|.....
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445556677777777777766654
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.07 E-value=4.5e+02 Score=31.11 Aligned_cols=186 Identities=14% Similarity=0.082 Sum_probs=98.2
Q ss_pred HhcCCHHHHHHHHhhcC----CCCh-------hHHHHHHHHH-HHcCChHHHHHHHHHHHHcC----CCCChhHHHHHHH
Q 003273 508 SRSGDIDTARVVFDNLK----QRNV-------VSWTSLMTGY-GMHGLGDKAHWAFDQMRKEG----LAPDGVTFLVLLY 571 (834)
Q Consensus 508 ~k~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~ 571 (834)
....++.+|..+..+.. .|+. ..|+++-... ...|+.++|+++-+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566667766666543 2221 2566654433 34677888888887776631 1123445566666
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH-----HHHhhcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV-----DLLGRANRLD--EAVELIEGM-----PMEP----TPIIWV 635 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-----~~~~~~g~~~--~A~~~~~~~-----~~~p----~~~~~~ 635 (834)
+..-.|++++|..+.....+. .-.-+..++..+. ..+..+|... +.+..+... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778888888777655432 2222333333222 2345566332 222222222 1112 223444
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc----CCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 636 ALLNGCRIHANVELGELAANRLLEL----ESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
.++.++.+ .+.+...+...++. .|... ..+..|+.++...|+.++|......+......
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 45555433 34444444444443 23211 23347888888899999998888888765443
No 371
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=53.03 E-value=34 Score=22.14 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCcHHHHHHH--HHHHHhcCCCC
Q 003273 634 WVALLNGCRIHANVELGELA--ANRLLELESEK 664 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 664 (834)
|-++...+...|+.++|+.. ++-+..++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 55566667777788888887 44666666643
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.01 E-value=46 Score=26.03 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=35.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHH
Q 003273 540 MHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYF 586 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 586 (834)
...+.++|+..|...++.-..|. -.++..++.|++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999988887544433 466778888999999988887763
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.68 E-value=1.3e+02 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=11.5
Q ss_pred CCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 312 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
.||...|-+|-. .+.|-.+++...+.++.
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 344444444332 23444444444444443
No 374
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.49 E-value=25 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=21.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46678888888888888877777666554
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.49 E-value=1.4e+02 Score=24.71 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=39.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 003273 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 566 (834)
.+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|-..| .|...+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4556788888888888888888888877643 35666666666666666654 4444444
No 376
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.18 E-value=4.2e+02 Score=30.18 Aligned_cols=178 Identities=14% Similarity=0.068 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCCCC---chHHHHH-HhhCCCchhHHHHhcccCC--------CCcchhhHHHHHHHHHhCC----
Q 003273 51 TQVYLIHQQIIVQNLTHVP---PSHLIAA-YVSHNAPSPALSLLQRISP--------SPFSVFWWNALIRRAVRLR---- 114 (834)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~---~~~l~~~-~~~~g~~~~A~~~f~~~~~--------~~~~~~~~~~li~~~~~~g---- 114 (834)
..+...+..+...|..... ....... +....+++.|...|..... -.+ .+.+.+...|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~--~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP--PAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC--ccccHHHHHHhcCCCCcc
Confidence 4566666666665543322 2233333 4556778888888876533 122 45666777777654
Q ss_pred -CchhHHHHHHHHHHcCCCCCcccHHHHHHHHcc-CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hCCChhHHH
Q 003273 115 -LPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGE-LPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA--RCDTLSYAR 190 (834)
Q Consensus 115 -~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~--~~g~~~~A~ 190 (834)
+...|+.+|.+.-..| .|+...+...+.-... ..+...|..++....+.| .+....+.+++-..+ -..+.+.|.
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 4556888888877776 3454444333333333 245678888888888887 333333333333222 334678888
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC
Q 003273 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 191 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 233 (834)
..+.+..++|.|-...--..+..+.. ++.+.+.-.+..+.+.
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 88888887753221111122223333 6666666666666554
No 377
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.01 E-value=22 Score=34.05 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=44.7
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 608 LLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+..+.|+.+.|.+++.+. ...| ....|--+....-+.|+.+.|.+++++.++++|+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 455677788888888776 2334 456888888888888999999999999999988764
No 378
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.05 E-value=3.8e+02 Score=29.29 Aligned_cols=322 Identities=11% Similarity=0.040 Sum_probs=163.2
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCC-ChHHHHHHHHhcCCCCCCccchHH-----HHHHHHhc
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK-SVDVARVMFDAIAPKNRDVATWTV-----MIGSYSQN 437 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~~~~~~~~~~~~~-----li~~~~~~ 437 (834)
.+++.|+.-++.+.............-...++-|.+.|.... .+..|..++.+..+...++..|.. ++..+.-.
T Consensus 61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id 140 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID 140 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh
Confidence 345556655554443311111111112235666777887776 777888888777654556666643 44555667
Q ss_pred CChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhh---------hhhHHHHHHHHHHHHHhCCCccchhHH--------
Q 003273 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR---------LAALRFGRQIHAYVLRNQYEMLIPFVA-------- 500 (834)
Q Consensus 438 g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~-------- 500 (834)
.++..|++++.-=- ..-.|-..+|..++...+. ..+++...+.-+.+.+... +|+..-
T Consensus 141 kD~~sA~elLavga---~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~--sdk~~~E~LkvFyl 215 (629)
T KOG2300|consen 141 KDFPSALELLAVGA---ESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS--SDKTQKEMLKVFYL 215 (629)
T ss_pred ccchhHHHHHhccc---cccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHH
Confidence 88888888744221 1123334455555544433 2334444444455554432 232221
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC-------------------CCChh--HH----------------HHHHHHHHH--c
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLK-------------------QRNVV--SW----------------TSLMTGYGM--H 541 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~-------------------~~~~~--~~----------------~~li~~~~~--~ 541 (834)
+.=+.-|.-.|+...+...++++. .|.+. .| ..|..+|.+ .
T Consensus 216 ~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~ 295 (629)
T KOG2300|consen 216 VLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQ 295 (629)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHH
Confidence 222344566677777766665443 11111 11 111222221 1
Q ss_pred CChHHHHHHHHHHHHcC-CCCCh----hHHHHHHHHH-HhcCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHH
Q 003273 542 GLGDKAHWAFDQMRKEG-LAPDG----VTFLVLLYAC-SHSGMVDQGLKYFDSMSKEFGISARA-------EHYACIVDL 608 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g-~~p~~----~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~l~~~ 608 (834)
+-.++|+...++..+.. ..|=. .++.-.+-+| .-.|++.+|++-...|.+-..-.|.+ .+..+++..
T Consensus 296 K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGl 375 (629)
T KOG2300|consen 296 KYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGL 375 (629)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhh
Confidence 12333444433333322 22211 1111222223 24789999999998887655555652 223345555
Q ss_pred Hh-hcCCHHHHHHHHHhC-CC--CCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----------hHHHHH
Q 003273 609 LG-RANRLDEAVELIEGM-PM--EPTPI--IWVALLNGCRIHANVELGELAANRLLELESEKDG----------SYTLLS 672 (834)
Q Consensus 609 ~~-~~g~~~~A~~~~~~~-~~--~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----------~~~~l~ 672 (834)
|+ ..|.+++|..-|... .. +-|.- .-..+...|.+.|+. +..++-+-.+.|.|.. ++...+
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~---ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA---EDLYKALDLIGPLNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH---HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH
Confidence 54 467889888777655 21 12221 122333347777754 4445555556666432 334444
Q ss_pred HHHHhcCCchhHHHHHHHHHh
Q 003273 673 NIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 673 ~~~~~~g~~~~a~~~~~~m~~ 693 (834)
-.....+++.||++...+-.+
T Consensus 453 lfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 453 LFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHhccHHHHHHHHHHHHh
Confidence 445688999999998766554
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.67 E-value=3.9e+02 Score=29.35 Aligned_cols=462 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC-hhHHHHHHH
Q 003273 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT-LSYARQLFD 194 (834)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~~~ 194 (834)
+.....+|+..... +.-|...|..-+.-|-+.+...+...++..|+... +.++.+|-.-..-...-+. ++.|+.+|.
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHH
Q ss_pred hcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHh
Q 003273 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFER 274 (834)
Q Consensus 195 ~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~ 274 (834)
.-.+.++.+...|-..... ....+..+..+-... |...+..|- +..+.+.+...+..
T Consensus 165 rgLR~npdsp~Lw~eyfrm-----EL~~~~Kl~~rr~~~-g~~~~~~~~-----------------eie~ge~~~~~~~~ 221 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFRM-----ELMYAEKLRNRREEL-GLDSSDKDE-----------------EIERGELAWINYAN 221 (568)
T ss_pred HHhhcCCCChHHHHHHHHH-----HHHHHHHHHHHHHHh-ccccchhHH-----------------HHHHHHHHHHhhcc
Q ss_pred cCCCChhHHHHH-HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH
Q 003273 275 MKVKDVVSWNAM-VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL 353 (834)
Q Consensus 275 ~~~~d~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 353 (834)
-.......--.+ .+..-......+-.+-...-...+..-|+.+|.-+..-...-
T Consensus 222 s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i------------------------- 276 (568)
T KOG2396|consen 222 SVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEI------------------------- 276 (568)
T ss_pred chhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH-------------------------
Q ss_pred HHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHH
Q 003273 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433 (834)
Q Consensus 354 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~ 433 (834)
....+.......-..+.-.-..+....+|++....-++...|+..|..
T Consensus 277 --------------------------------~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~ 324 (568)
T KOG2396|consen 277 --------------------------------LSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITF 324 (568)
T ss_pred --------------------------------HHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred H------HhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHH
Q 003273 434 Y------SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507 (834)
Q Consensus 434 ~------~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 507 (834)
+ .+.......+.+|+... .+.....--+.......-.......++..-..+...++. .+...+-.-+...
T Consensus 325 ~lE~~~~~r~~~I~h~~~~~~~~~---~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~-~s~k~~~~kl~~~ 400 (568)
T KOG2396|consen 325 CLERFTFLRGKRILHTMCVFRKAH---ELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR-DSGKMWQLKLQVL 400 (568)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH---HhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc-chHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHH
Q 003273 508 SRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF-LVLLYACSHSGMVDQ 581 (834)
Q Consensus 508 ~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~ 581 (834)
..... ++.-+|.+.. .+-...|.....+..+..-....+.++-.....-..|+..|+ +.++.-+...|-+.+
T Consensus 401 ~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ 478 (568)
T KOG2396|consen 401 IESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKK 478 (568)
T ss_pred Hhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHH
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHH---HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDL---LGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
|...+..+.. --+|+...|..||.. ...+| +.-+.++++.| ..-.|+..|...+.--..+|..+-+-.++-+
T Consensus 479 ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 479 ARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHH
Q ss_pred HHh-cCCCCCchH
Q 003273 657 LLE-LESEKDGSY 668 (834)
Q Consensus 657 ~~~-~~p~~~~~~ 668 (834)
+.+ ++|+...++
T Consensus 556 a~ktl~~~~~~af 568 (568)
T KOG2396|consen 556 AMKTLQGESAEAF 568 (568)
T ss_pred HHHhhChhhhhcC
No 380
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.80 E-value=2.2e+02 Score=26.32 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=68.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHhhcCC
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE-HYACI--VDLLGRANR 614 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--~~~~~~~g~ 614 (834)
++.+..++|+.-|.++.+.|...-++ .-..........|+...|...|+++-++. -.|.+. -..-| .-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcccc
Confidence 45666777777777777766543321 22233334566777777777777776442 222221 11111 123456677
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 615 LDEAVELIEGMPMEPT---PIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
+++...-.+.+..+.+ ...-.+|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777776666632222 23445566666777888888777777766
No 381
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=20 Score=41.24 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=64.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 620 (834)
+.++++.+.+.+...- +. .++|.-+.+.|-.+-|+.+.+.=..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~L----vG----qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNL----VG----QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCc----cc----HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 4556666655444322 21 13444456677777777665433222 223456899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 621 LIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 621 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
...+.. |..+|..|...-..+||.+.|+..|++....+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 888775 67799999999999999999999988775543
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.19 E-value=70 Score=28.55 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
-+.|.++++-|. .....-.........|++..|.++.+.++..+|+|..+-...+++|...|.-.+....
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~ 126 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANW 126 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHH
Confidence 355666676664 2223333444466789999999999999999999999999999998877755544333
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.78 E-value=1.9e+02 Score=28.99 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=56.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKE--GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR- 611 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~- 611 (834)
|.+++..+++.+++...-+--+. .++|...-.. |-.|++.+.+..+.++-....+.-+ .-+..-|..++++|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 66778888888877655443331 1344333333 3357888888888888777665422 2223347777777654
Q ss_pred ----cCCHHHHHHHHHhC
Q 003273 612 ----ANRLDEAVELIEGM 625 (834)
Q Consensus 612 ----~g~~~~A~~~~~~~ 625 (834)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998544
No 384
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.87 E-value=1.6e+02 Score=28.47 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhH--HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP---DGVT--FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
-.|.|+--|.-+..+.+|.+.|.. +.|+.| |..+ =..-+......|++++|++....+..+ -+..|.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555444444445555555543 233444 2222 223344556677777777766655322 23333322222
Q ss_pred HHH----HHhhcCCHHHHHHHHHhC
Q 003273 605 IVD----LLGRANRLDEAVELIEGM 625 (834)
Q Consensus 605 l~~----~~~~~g~~~~A~~~~~~~ 625 (834)
|.. -+.|.|..++|+++.+.-
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 245778888888887653
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=46.72 E-value=3.3e+02 Score=27.62 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhh
Q 003273 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG 232 (834)
Q Consensus 172 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 232 (834)
+.+.....|..+|.+.+|.++-+....-++.+...|-.++..++..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455566788999999999999998888777888999999999999998888888887753
No 386
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=96 Score=31.82 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=66.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-P---MEPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
|--=.+-|.+..++..|...|.+. . ..|| .+.|+.-..+-...||+..++.-..+++.++|.+.-+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333456678888899999988765 1 1243 567777777777789999999999999999999988888888888
Q ss_pred HhcCCchhHHHHHH
Q 003273 676 ANAGRWKDVARIRS 689 (834)
Q Consensus 676 ~~~g~~~~a~~~~~ 689 (834)
....++.+|..+.+
T Consensus 164 ~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 164 LELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888665555443
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.60 E-value=3.6e+02 Score=29.21 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=43.0
Q ss_pred HHhCCCchhHHHHHHHHHHcCCCCCccc--HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCC
Q 003273 110 AVRLRLPDNAFRLFLQMMRRGWHPDEYT--FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF--VCNALMAMYARCDT 185 (834)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~ 185 (834)
.++.|+.+- .+.+.+.|..|+... ..+.|..++..|+.+ +.+.+++.|..++.. ...+-+...++.|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 345565544 344445676665432 234455555666654 445555666555432 12234555667788
Q ss_pred hhHHHHHHHhc
Q 003273 186 LSYARQLFDEM 196 (834)
Q Consensus 186 ~~~A~~~~~~m 196 (834)
.+.+..+++.-
T Consensus 81 ~~~v~~Ll~~~ 91 (413)
T PHA02875 81 VKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHHcC
Confidence 88777777643
No 388
>PRK10941 hypothetical protein; Provisional
Probab=45.60 E-value=1.5e+02 Score=30.02 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 603 ACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
+.+-.+|.+.++++.|+...+.+ ...| ++.-|.--.-.+.+.|....|..-++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34555677777777777777766 2334 355676666678888888888888888888888877653
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.06 E-value=59 Score=35.80 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a 650 (834)
-.|+...|...+.... ...|.. .....|...+.+.|...+|-.++.+. . ....+.++..+.+++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566667766665443 334431 22344566666777777777776554 1 123456777888888888889999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
++.++.++++.|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999998887766655544
No 390
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.90 E-value=2.9e+02 Score=28.33 Aligned_cols=114 Identities=15% Similarity=0.042 Sum_probs=57.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDG---VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 610 (834)
+..+..+.|+..+|.+.|+++.+. .|-. .....|+.+|....-+.+...++.+.- +... |...+ -|.-.++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-disl-PkSA~-icYTaALL 355 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISL-PKSAA-ICYTAALL 355 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccC-cchHH-HHHHHHHH
Confidence 333445678888888888877663 3321 223456677776666666665554442 1111 22111 11111222
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 611 RANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
++..+-++. .|+..+-..|-.+ -..|.++..++.+.+|.-+.
T Consensus 356 ------K~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 356 ------KTRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred ------HHHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcH
Confidence 222233332 3555443333222 12467788888999886543
No 391
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.84 E-value=4.5e+02 Score=28.73 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=70.0
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------cCCCCCh--
Q 003273 505 DMYSRSGDIDTARVVFDNLK---QR---------NVVSWTSLMTGYGMHGLGDKAHWAFDQMRK-------EGLAPDG-- 563 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~-- 563 (834)
..+.-.|++.+|.+++...- .+ .-+.||.|...+.+.|.+..+..+|.+.++ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 44556799999999887654 11 234688888888888888888888877764 5666632
Q ss_pred ---------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003273 564 ---------VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609 (834)
Q Consensus 564 ---------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 609 (834)
++| ...-.+.+.|++-.|.+.|....+.+.-.| ..|-.|..++
T Consensus 328 tls~nks~eilY-NcG~~~Lh~grPl~AfqCf~~av~vfh~nP--rlWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILY-NCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--RLWLRLAECC 379 (696)
T ss_pred ehhcccchhhHH-hhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--HHHHHHHHHH
Confidence 222 233467889999999999998887655444 4466565554
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.21 E-value=55 Score=26.16 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHH
Q 003273 52 QVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120 (834)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 120 (834)
....++...+..|+-... .+.+-.+--+.|+.+.|+++++.++ +.+ -.|...+.++-..|+-.-|.
T Consensus 20 ~~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKE--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC--cHHHHHHHHHHHcCchhhhh
Confidence 355667777777654443 4444433346688889999999998 776 77888888888877665554
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.58 E-value=65 Score=26.30 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=37.2
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 641 CRIHANVELGELAANRLLELESEK---------DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+...||+..|.+.+.+.++..... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777777777776653221 12345678888999999999999888764
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.50 E-value=1.8e+02 Score=25.35 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
.+.+++..+...|+-...+..|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778888888777646677778888888888888888888864
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.35 E-value=46 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=12.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHh
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQ 308 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~ 308 (834)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
No 396
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.23 E-value=4.6e+02 Score=28.30 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 603 ACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
..|+.-|.-.|.+.||...++++. .-...+++.+++.+.-+.|+-+.-...++..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456677888999999999998874 3345678888888887777655444443333
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.12 E-value=6e+02 Score=29.61 Aligned_cols=246 Identities=9% Similarity=-0.069 Sum_probs=120.1
Q ss_pred cCChhHHHHHHHhhcccCCCCcCCcccH--HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHH
Q 003273 437 NGGANDALALFPQMFQQDKLVKPNAFTL--SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 514 (834)
..+.+.|..++...... .++.++.... ..+............+...+....... .+..+...-+..-...++++
T Consensus 254 r~d~~~A~~~~~~~~~~-~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~---~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 254 RQDAENARLMIPSLVRA-QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS---QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HhCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc---CCcHHHHHHHHHHHHccCHH
Confidence 34568888888876441 2233322211 111111111111333333333332221 23333444455555778888
Q ss_pred HHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHhH
Q 003273 515 TARVVFDNLKQ--RN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV-DQGLKYFDSMS 590 (834)
Q Consensus 515 ~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 590 (834)
.+...|..|.. .+ ..-.-=+..++...|+.++|...|+++.. + .+|..++.+- +.|.. .-.......-.
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~----~--~~fYG~LAa~-~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ----Q--RGFYPMVAAQ-RLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CCcHHHHHHH-HcCCCCCCCCCCCCchh
Confidence 88888888762 12 22222245566667888888888888643 1 2455554331 12211 00000000000
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCCch
Q 003273 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE---SEKDGS 667 (834)
Q Consensus 591 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~ 667 (834)
....-.| -..-+..+...|+..+|...+..+....+......+...-...|..+.++.+..+....+ -.-+..
T Consensus 403 ~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~ 478 (644)
T PRK11619 403 SALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLA 478 (644)
T ss_pred hhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcc
Confidence 0000001 112345567788999988888766333455555555555677888888887776543221 112345
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHH-hcCCcc
Q 003273 668 YTLLSNIYANAGRWKDVARIRSLMK-HTGVKK 698 (834)
Q Consensus 668 ~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~ 698 (834)
|.-....++..-..+.+. ++..++ +.+..+
T Consensus 479 ~~~~~~~~a~~~~v~~~l-v~ai~rqES~f~p 509 (644)
T PRK11619 479 WNDEFRRYTSGKGIPQSY-AMAIARQESAWNP 509 (644)
T ss_pred hHHHHHHHHHHcCCCHHH-HHHHHHHhcCCCC
Confidence 666666666665666554 333333 555543
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.95 E-value=3.6e+02 Score=27.07 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=46.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF-LVLLYAC 573 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~ 573 (834)
.++.....+...|.+.|++.+|+..|-....++...+-.++.-....|...++ ..| ...+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHHHHHH
Confidence 67888899999999999999999888655444433332233222223322222 222 1222245
Q ss_pred HhcCCHHHHHHHHHHhHHh
Q 003273 574 SHSGMVDQGLKYFDSMSKE 592 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~ 592 (834)
...+++..|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 6677888888877766543
No 399
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.79 E-value=1.5e+02 Score=23.75 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 003273 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
+.|+.+.|..+++.+. +.+..+...+.++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 66667777777777777655543
No 400
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.65 E-value=1.8e+02 Score=23.53 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCch-hHHHHHHHH
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSNIYANAGRWK-DVARIRSLM 691 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 691 (834)
|....-.+...+...|+.+.|.+.+-.+++.+|+ +..+-..|+.++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556667777788888888888888777777655 3566677777777777643 555555554
No 401
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.36 E-value=3.8e+02 Score=27.18 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCCHHHHHHHHHHHHhcCcHHHHH
Q 003273 594 GISARAEHYACIVDLLGRANRLDEAVELIEGM-P---MEPTPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 594 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
+-.++..+..++++.+++.+++.+-.++++.. + ...|...|..++..-..+||.+...
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 34444444555555555555555555554433 1 1234445555555555555544333
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.98 E-value=6.9e+02 Score=30.04 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHH
Q 003273 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285 (834)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~ 285 (834)
-|..|+.-|...|..++|++++.+...... .-|.. .....+.-.+.+.....++....-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-~~d~~-------------------~~~~~e~ii~YL~~l~~~~~~Li~~ 565 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS-DTDSF-------------------QLDGLEKIIEYLKKLGAENLDLILE 565 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc-ccccc-------------------hhhhHHHHHHHHHHhcccchhHHHH
Confidence 388999999999999999999999976310 01111 1112333444444444443321111
Q ss_pred HHHHHHcCCCHHHHHHHHHHh---HhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh
Q 003273 286 MVTGYSRIGSFEDAFALFKKM---RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m---~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 362 (834)
..+ +.-..+.+...++|-.- ....+.| .-+-.|......+-++.+++.+....-.++..-.+.++.-|..
T Consensus 566 y~~-wvl~~~p~~gi~Ift~~~~~~~~sis~------~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 566 YAD-WVLNKNPEAGIQIFTSEDKQEAESISR------DDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred Hhh-hhhccCchhheeeeeccChhhhccCCH------HHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111 12244566666666551 1111111 1234566677777888888888776555666656666655543
No 403
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=2.7e+02 Score=27.30 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=74.6
Q ss_pred hcCCHHHHHHHHhhcC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHH
Q 003273 509 RSGDIDTARVVFDNLK--QRNV-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 584 (834)
...+++.|...|.+.. .|++ .-|+.=+..+.+..+++.+..--.+.++ +.||.+ ....+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3445666666665554 5666 4566677788888889888888888888 788844 45556667778888888888
Q ss_pred HHHHhH---HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 585 YFDSMS---KEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 585 ~~~~m~---~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
.+.+.. +...+.|.......|.++--+.=...++..+.++.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 887653 22345555566666665544444444555544443
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.36 E-value=84 Score=29.84 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
++.++..++.++...|+.++|.+..+++..+-|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333333333333333333333333333333333
No 405
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=3.8e+02 Score=31.63 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+....||+++.|.+.-..+. |...|..|+.....+|+.+-|...|++... |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 344567899999998887764 556799999999999999999999998765 333333466678888766
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
++.+.... .-|... ..+..+ -.|+.++-.++++....-|- .|- .-..||.-++|++..+.+-..
T Consensus 719 Km~~iae~----r~D~~~-~~qnal--Yl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 719 KMMKIAEI----RNDATG-QFQNAL--YLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHh----hhhhHH-HHHHHH--HhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 66554422 222211 011111 25888888888887764332 221 124678888888888887663
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.91 E-value=5.3e+02 Score=28.43 Aligned_cols=165 Identities=10% Similarity=0.073 Sum_probs=84.1
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA 572 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 572 (834)
.+....-++++.++..-...-.+.+-.+|. ..+-..+-.++..|.++ ..+.-..+++++.+ ..-|.+.+..-+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHH
Confidence 333444455666665555555555555555 34455666666666666 34556666666666 34444444444444
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISAR------AEHYACIVDLLGRANRLDEAVELIEGMP----MEPTPIIWVALLNGCR 642 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~ 642 (834)
+...++.+.+..+|.++.. .+.|. .+.|.-++...+ .+.+.-+.+..+.. ...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444666666666666653 33331 234444443322 23333333333331 1112233333334455
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 643 IHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
...|+.+|+++...+++.+..|.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhh
Confidence 666677777777766666555443
No 407
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.37 E-value=7.3e+02 Score=29.85 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=21.0
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467788888888888888888887765
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.04 E-value=1.2e+02 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
.+..|.+.|.+++|.++++++++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 44568889999999999999888 7765443
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.88 E-value=8.1e+02 Score=30.20 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=48.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC------------------------------CC--hhHHHHHHHHHHHcCChHHHH
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQ------------------------------RN--VVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~------------------------------~~--~~~~~~li~~~~~~g~~~~A~ 548 (834)
-.+..+|..+|...+|...|.+... +. ..-|-..+.-+-+++..+++.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3455568888999999888887641 01 123444555666666666666
Q ss_pred HHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 549 WAFDQMRKEGLAPD----GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 549 ~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
++-...++. +.|| ..+++.+.+-....|.+-+|...
T Consensus 1004 QlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 1004 QLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 666666653 2332 23345555555555555555443
No 410
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.82 E-value=7.9e+02 Score=30.09 Aligned_cols=183 Identities=11% Similarity=-0.028 Sum_probs=95.7
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
+|..+-.+.++.+...+.- ....+...+. ++|...-...+.++.+.+..+. +..... .++...-....
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~--D~d~~VR~~Av~aL~~~~~~~~----l~~~l~-----D~~~~VR~~aa 763 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALG--DPDHRVRIEAVRALVSVDDVES----VAGAAT-----DENREVRIAVA 763 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhc--CCCHHHHHHHHHHHhcccCcHH----HHHHhc-----CCCHHHHHHHH
Confidence 3445555555555543321 1223333343 4555444455555555544322 112222 23333333444
Q ss_pred HHHhhhhhHHH-HHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHHcCChHH
Q 003273 469 MACARLAALRF-GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV-VFDNLKQRNVVSWTSLMTGYGMHGLGDK 546 (834)
Q Consensus 469 ~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~ 546 (834)
.++...+..+. +...+..+.+ + .++.+-.+.+..+.+.|..+.+.. +...+..+|...-...+.++...+. .+
T Consensus 764 ~aL~~~~~~~~~~~~~L~~ll~---D-~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~ 838 (897)
T PRK13800 764 KGLATLGAGGAPAGDAVRALTG---D-PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DV 838 (897)
T ss_pred HHHHHhccccchhHHHHHHHhc---C-CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cc
Confidence 45544443322 1222222222 2 667788888888888887655533 3444446666566666777777765 45
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 547 AHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 547 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
+...+-.+.+ .|+...-...+.++........+...+..+.+
T Consensus 839 a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 839 AVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6677666665 56766666666777665334456666666654
No 411
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.54 E-value=2.1e+02 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
+..+-++......+-|++......|.||.+.+++..|.++|+.+..+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44455566666678999999999999999999999999999988653 3344445665543
No 412
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.25 E-value=3.4e+02 Score=25.63 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCC--------c-----cchhHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYE--------M-----LIPFVANCLIDMYSRSGDIDTARVVFDNLK 524 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--------~-----~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 524 (834)
.+++-.|-+.-++.+|+.+++.+-+..+. . +--.+.|.-...+.++|.++.|..++++-.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 46677788888889999888887654322 0 222455777788888888888888887543
No 413
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=37.31 E-value=1.1e+02 Score=26.97 Aligned_cols=70 Identities=13% Similarity=0.313 Sum_probs=46.1
Q ss_pred EEEeCCeEEEEeeCC-CCCCChHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhhhcccHHHHHHhchhcCCCC
Q 003273 704 WVQGKEGTATFFVGD-RTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPG 782 (834)
Q Consensus 704 ~~~~~~~~~~f~~~~-~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~ 782 (834)
|+.-.+..-.|+.|| ..+|++.++--.|.+|.+++.... -.++..|++ +...||..||+...|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~----v~~akVDiD----------~~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----WQVAIADLE----------QSEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc----eEEEEEECC----------CCHHHHHHcCCccCC--
Confidence 333334445699999 789999998888888877763110 123333444 356799999999988
Q ss_pred CcEEEeec
Q 003273 783 TPIRITKN 790 (834)
Q Consensus 783 ~~~~~~~n 790 (834)
++-++||
T Consensus 94 -TLl~Fkd 100 (132)
T PRK11509 94 -ATLVFTG 100 (132)
T ss_pred -EEEEEEC
Confidence 3445555
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.00 E-value=5.8e+02 Score=27.75 Aligned_cols=117 Identities=9% Similarity=0.130 Sum_probs=75.3
Q ss_pred HhCCChhHHHH-HHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 003273 215 AQSGDAEGGLM-LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK---VKDVVSWNAMVTGY 290 (834)
Q Consensus 215 ~~~g~~~~A~~-~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~ 290 (834)
...|+...|-+ +|..++.. .-.|+.+.+-+.+.. ..|.++.+.+.+.... .....+-..++...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~-----------~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFS-----------HLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHH-----------HhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 44566665544 44444443 556666655555543 5677888777765443 33455667788888
Q ss_pred HcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003273 291 SRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344 (834)
Q Consensus 291 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 344 (834)
.+.|++++|..+-..|....+. |...........-+.|-+++++..++++...
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8899999999999888877665 4433333333334557788888888887653
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.74 E-value=64 Score=32.69 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 570 (834)
.||..|....+.|+.++|+.+++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 56788999999999999999999999999877677775544
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.65 E-value=59 Score=32.92 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003273 319 SAVIAGYAQRGHGHEALDVFRQMQFCGLE 347 (834)
Q Consensus 319 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 347 (834)
|..|....+.|++++|+.++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455555555555555555555555543
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.42 E-value=3e+02 Score=23.96 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
++.++|..|...|+--. +.-|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777766655 44455555566666777777766653
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.42 E-value=55 Score=28.60 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=25.5
Q ss_pred hCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 003273 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145 (834)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 145 (834)
..|.-.+|-.+|+.|+..|-+||. ++.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346677899999999999999884 67777654
No 419
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.36 E-value=1.3e+03 Score=31.21 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..+|-.....++..|..+.|..+.-++.+..+ +..+.-.+..+-..|+-..|..+.+...+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45888888889999999999988888887775 678889999999999999999999888754
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.42 E-value=1.4e+02 Score=20.72 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 571 (834)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777776666666555543
No 421
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.29 E-value=5.4e+02 Score=26.58 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCCCCCeeeHHHHHHHH-HhcCChhHHHHHHHHHHHCCC
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQ----ENVKLNVVTWSAVIAGY-AQRGHGHEALDVFRQMQFCGL 346 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~ 346 (834)
..+-.....|++.|+-+.|++.+++..+ .|.+.|++.+.+-+..+ ....-+.+-++..+.+.+.|-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4566777889999999999998877654 46677777666655433 334445666777777777664
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.11 E-value=1.3e+02 Score=20.88 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
..+.|-..++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777766666665554
No 423
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.78 E-value=6.4e+02 Score=27.24 Aligned_cols=129 Identities=10% Similarity=-0.010 Sum_probs=54.4
Q ss_pred HHHHHhcCCCCC----chHHHHHHhhCCCchhHHHHhcccCCCCcc-hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCC
Q 003273 58 QQIIVQNLTHVP----PSHLIAAYVSHNAPSPALSLLQRISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132 (834)
Q Consensus 58 ~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 132 (834)
..++..|..++. ..+.+...+..|+.+-+.-+++.-..++.. ...+ +.+...+..|+.+.+..+++ .|..
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~----~~~~ 93 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAVEELLD----LGKF 93 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHHHHHHH----cCCc
Confidence 334445554433 344455555666666554444432222210 0112 23334445566554433332 2211
Q ss_pred CC----cccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHHhc
Q 003273 133 PD----EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV--CNALMAMYARCDTLSYARQLFDEM 196 (834)
Q Consensus 133 p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~~~~~g~~~~A~~~~~~m 196 (834)
.+ ..-. +.+...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 94 ~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 94 ADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred ccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 11 1111 122223334443 34444555565443221 223344445666666666665543
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.71 E-value=1.5e+02 Score=28.20 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=26.9
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
...+.+......+.+.+.....|++..|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444333345566666666666666666666666555555
No 425
>PF15161 Neuropep_like: Neuropeptide-like
Probab=33.29 E-value=21 Score=25.16 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=12.7
Q ss_pred ecccccCCcchhHHHHhhh
Q 003273 789 KNLRICGDCHSAITFISMI 807 (834)
Q Consensus 789 ~nl~~~~~~h~~~~~~s~~ 807 (834)
---|-|.|||.+- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 3568899999765 66543
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.24 E-value=61 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
..++.++...|++++|.++.+.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.15 E-value=2.2e+02 Score=24.09 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCCchhHHHHHHHHHH
Q 003273 102 WWNALIRRAVRLRLPDNAFRLFLQMMR 128 (834)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (834)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999988776
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.77 E-value=98 Score=22.96 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.-.+|.||.+.|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555555555555555443
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.32 E-value=5.4e+02 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.8
Q ss_pred HHhcCChhHHHHHHHhhcccCCCCcCCccc
Q 003273 434 YSQNGGANDALALFPQMFQQDKLVKPNAFT 463 (834)
Q Consensus 434 ~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t 463 (834)
..+.++.++|+..+.+.+. .|+..|..|
T Consensus 13 ~v~~~~~~~ai~~yk~iL~--kg~s~dek~ 40 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILG--KGVSKDEKT 40 (421)
T ss_pred hhhhhhHHHHHHHHHHHhc--CCCChhhhh
Confidence 3455667777777777776 666655544
No 430
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.23 E-value=4.9e+02 Score=25.46 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 510 SGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
.+++++|.+.+-... .|+- ..-++.++...|+.+.|+.+++.+.-... +......++.+ ...+.+.||..+-+.
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 466777777764432 1221 22367777778888888888887433111 12223333333 445788888887765
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 003273 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT 630 (834)
Q Consensus 589 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 630 (834)
..+. -....+..++..+.....-....+.+-.+|..+.
T Consensus 166 ~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 166 YPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred Cchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 5431 1134566666666544432333444445555443
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.82 E-value=1.8e+02 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 664 KDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 664 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
...+|..++-+|.-.+|+.+|.++|..+.
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999988775
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=3.9e+02 Score=29.91 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=64.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCh------------hHHHHHHHHHHhcCCHHHHHHHHHHhHHh--cCCCC------
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPDG------------VTFLVLLYACSHSGMVDQGLKYFDSMSKE--FGISA------ 597 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~~------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~~p------ 597 (834)
|....-+++|...|.-.+.. ..|+. .+...+...|...|+.+-|..+.+...=. .-..|
T Consensus 248 ~~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 34555677888888777764 33432 23445555678888888888777754310 01111
Q ss_pred -----------ChHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Q 003273 598 -----------RAEHYACI---VDLLGRANRLDEAVELIEGM-PMEP--TPIIWVALLNGCR-IHANVELGELAANRL 657 (834)
Q Consensus 598 -----------~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 657 (834)
+...|-++ +..+.+.|.+.-|.++.+-+ ...| |+.....+|..|. +..+++--++.++..
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12223332 34456677777777766544 2222 4555556666643 334555555554444
No 433
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.77 E-value=3.5e+02 Score=27.12 Aligned_cols=59 Identities=24% Similarity=0.137 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 635 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.++=+++...++++.|..+.++++.++|+++.-..--+-+|...|...-|.+-.....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 44445578888999999999999999999988788888899999999988887777544
No 434
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.46 E-value=9e+02 Score=27.95 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCC-chH-----HHHHHHHHhcCCchhHHHHHHHHH
Q 003273 635 VALLNGCRIHANVELGELAANRLLELE---SEKD-GSY-----TLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 635 ~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
-++++.-.-.|++.+..........+- |+.. ..+ ..+.+.|...|+.++|...+....
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 344444333677766655555555442 3222 222 355666888899999988887654
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.03 E-value=3.4e+02 Score=22.89 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.+...|++++|...=.....||...|-+|- -.+.|..+++...+.++-.
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 344556666663333333356666665443 2345555555555555544
No 436
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=29.99 E-value=80 Score=31.78 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=39.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 609 LGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
..+.|+.++|..+|+.. ...|+ +.+...+....-.+++.-+|...|-+++.+.|.++.+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 45678888888887754 33343 3344444444455667777778888888888877665544
No 437
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=29.97 E-value=28 Score=19.00 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=8.4
Q ss_pred CCcchhHHHHhh
Q 003273 795 GDCHSAITFISM 806 (834)
Q Consensus 795 ~~~h~~~~~~s~ 806 (834)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888773
No 438
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.93 E-value=7.8e+02 Score=27.05 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=75.7
Q ss_pred HHhcCChhHHHHHHHHHHHCC-CCCC--HhH-----HHHHHH-hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhh--H
Q 003273 325 YAQRGHGHEALDVFRQMQFCG-LEPN--VVT-----LVSLLS-GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM--V 393 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m~~~g-~~pd--~~t-----~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~ 393 (834)
-.-.|++.+|++-..+|.+.- -.|. ... ...++. -|...+..+.|+.-+..+.+. ....|.. .
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~------t~~~dl~a~~ 406 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL------TESIDLQAFC 406 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh------hhHHHHHHHH
Confidence 345799999999999998742 2243 111 122222 245667888888877777776 3333433 3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHH--------HHHHH--HhcCChhHHHHHHHhhcc
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV--------MIGSY--SQNGGANDALALFPQMFQ 452 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~--------li~~~--~~~g~~~~A~~l~~~m~~ 452 (834)
-..+.-.|.+.|+.++-.++.+.+. .++..++.. .+.|+ ...+++.||..++++-++
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~--p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIG--PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3456778899999988888888886 344444322 11121 346788888888877665
No 439
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.78 E-value=1.8e+03 Score=31.33 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC---hhHHHHH---HHHHHh-cCCHHHHHHHHHHhHH-hcCCCCChHHHHHHHHHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD---GVTFLVL---LYACSH-SGMVDQGLKYFDSMSK-EFGISARAEHYACIVDLL 609 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~l---l~a~~~-~g~~~~a~~~~~~m~~-~~~~~p~~~~~~~l~~~~ 609 (834)
..++|-++.++..+.++-. -|+ ...|.-+ +.++.. .+....|+++.+...- .+.-+-..+.|+-=+..+
T Consensus 2746 Arkh~l~~vcl~~L~~iyt---lp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~ 2822 (3550)
T KOG0889|consen 2746 ARKHGLPDVCLNQLAKIYT---LPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFL 2822 (3550)
T ss_pred HHhcCChHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHH
Confidence 3457777777777777655 243 2223222 222222 2345566666554321 123334466677777888
Q ss_pred hhcCCHHHHHHHHHhC
Q 003273 610 GRANRLDEAVELIEGM 625 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~ 625 (834)
.+.|+.++|.+.|..+
T Consensus 2823 ~kL~~~eeAn~~fs~A 2838 (3550)
T KOG0889|consen 2823 EKLGKFEEANKAFSAA 2838 (3550)
T ss_pred HHhcCcchhHHHHHHH
Confidence 8999999999998766
No 440
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.68 E-value=1.1e+03 Score=28.78 Aligned_cols=396 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003273 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMY 180 (834)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~ 180 (834)
+++-++-.++.....+++|+..|++...+ ++--...|.+. +..+..+++++.+.| .|
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~------------ 532 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQ---------FRLGITLLEKASEQG-DP------------ 532 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHH---------HHhhHHHHHHHHhcC-Ch------------
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHH--HHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA--YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSR 258 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~ 258 (834)
..+++|+.-|+.+... .......|..+ |-+.|++++-++.+.-..+.+.-.|...-.
T Consensus 533 ---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 591 (932)
T PRK13184 533 ---RDFTQALSEFSYLHGG---VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL--------------- 591 (932)
T ss_pred ---HHHHHHHHHHHHhcCC---CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH---------------
Q ss_pred hhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-------CCCCCeeeHHHH---HHHHHhc
Q 003273 259 GKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE-------NVKLNVVTWSAV---IAGYAQR 328 (834)
Q Consensus 259 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~~~~~l---i~~~~~~ 328 (834)
+.+-+.+-.+.+..-.....+-.-..+...-+.-...+-..+|+.+..+ .+.+.+.++..= +-.-.-.
T Consensus 592 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (932)
T PRK13184 592 --RDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWS 669 (932)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHh
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHH-----------
Q 003273 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL----------- 397 (834)
Q Consensus 329 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------- 397 (834)
|..---.++|++.... +|..+...++-..+..|.++.+.+..+.... ....-..+-+..
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 739 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAE-------VSDEITFTESIVEQKVEELMFFL 739 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------HhhhccchHHHHhhhHHHHHHHH
Q ss_pred --HHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhh
Q 003273 398 --IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475 (834)
Q Consensus 398 --i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~ 475 (834)
+.+......++++.+.+..+....- ...+..++.-..-.++.+....+.+........-.-........+.++.-..
T Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (932)
T PRK13184 740 KGLEALSNKEDYEKAFKHLDNTDPTLI-LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNR 818 (932)
T ss_pred HHHHHHHccccHHHHHhhhhhCCHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhc
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
+++.+-.++......-........+-...--++-.++-+.|...|....++-+..-.-....+.-.|..++....+++
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 819 DLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPRSLDGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred cHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcchhhccccchhccccccccHHHH
No 441
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.14 E-value=4.9e+02 Score=26.67 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
.++..+.+..++....+.+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~----~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK----TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555666666666665555554 333444567778889999999999988865
No 442
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=29.13 E-value=4.3e+02 Score=23.76 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-------ChhHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCChHHHH
Q 003273 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-------DGVTFLVLLYACSHSGM-VDQGLKYFDSMSKEFGISARAEHYA 603 (834)
Q Consensus 532 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~ 603 (834)
|.++.-.+..++..-.+.+++.+.. +.| +..+|..++.+.++... ---+..+|+-+.+ .+.+++...|.
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~ 119 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHF--LNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHH
Confidence 3444444444444444444444432 222 33456666666666555 3445566666654 35666667777
Q ss_pred HHHHHHhh
Q 003273 604 CIVDLLGR 611 (834)
Q Consensus 604 ~l~~~~~~ 611 (834)
+|+....+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 77665544
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.06 E-value=4.1e+02 Score=27.52 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=74.8
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh------cCCHHHHHHHHHHhHHhcCCCCC
Q 003273 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH------SGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
+.|...|+- +..++++.++++....+. |.+......|.+|-- .-+|..-..+|+.+. .+.|+
T Consensus 261 dQDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apS 328 (415)
T COG4941 261 DQDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPS 328 (415)
T ss_pred ccchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCC
Confidence 345666654 235677777777777654 777776666665432 235666667777664 34454
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
+.+--.-.-++++.--.+.++..++.....|. ...|..-..-+.+.|..++|...|++++++.++.
T Consensus 329 PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 329 PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 33222222233444445556666665533321 2234444445788888889999999998887754
No 444
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.02 E-value=7.3e+02 Score=26.52 Aligned_cols=26 Identities=12% Similarity=-0.259 Sum_probs=15.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
.+...+++..|.++|+++.+....|.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34455666666666666666544443
No 445
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.74 E-value=4.7e+02 Score=29.76 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcC--CCCCeeeHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHhHHHHH
Q 003273 285 AMVTGYSRIGSFEDAFALFKKMRQEN--VKLNVVTWSAVIAGYAQRGHGH------EALDVFRQMQFCGLEPNVVTLVSL 356 (834)
Q Consensus 285 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~g~~pd~~t~~~l 356 (834)
+|..+|..+|++-.+..+++.....+ -+.-...+|..|....+.|.++ .|.+++++ ..+.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 67777888888888888887776542 2223345777777777887654 23333333 2356788888888
Q ss_pred HHhhhhhchhhhhhHHHHHHHHH
Q 003273 357 LSGCASVGALLLGKETHCYTIKR 379 (834)
Q Consensus 357 l~a~~~~~~~~~a~~~~~~~~~~ 379 (834)
+.+..+.-.-..+.-+....+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
Confidence 88776655555555555555543
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=28.72 E-value=82 Score=31.70 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP 629 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 629 (834)
..+.|+.++|..+|+... .+.|+ +....-+........++-+|-+++-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 357899999999998776 55665 455555555555666777777777665 3444
No 447
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.65 E-value=67 Score=28.12 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHH
Q 003273 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 324 (834)
.|.-.+|..+|++|.++|-.|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3444556666666666665554 45555543
No 448
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.18 E-value=2.1e+02 Score=25.66 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 302 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
+.+.+.++|++ -+..-..++..+.+.+..-.|.++++++.+.+...+..|.-..|..+...|-+
T Consensus 8 ~~~~lk~~glr-~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLR-LTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCC-cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 44455667776 34455677788888888899999999999988777777776777777666543
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.77 E-value=5e+02 Score=26.62 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
.-.++..+.+.+++.+..+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666664 344556677888889999999999888765
No 450
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.68 E-value=7.2e+02 Score=25.90 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh---cCCHHHHH
Q 003273 544 GDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR---ANRLDEAV 619 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~ 619 (834)
.+.-+.+++++++. .|+ ..-...++..+.+....++..+-|+.+... .+-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 34556677777664 454 455666666777777777777777777643 12244555555554333 11233333
Q ss_pred HHHHh-------CCCC--------C--CHHHHHHHHH---HHHhcCcHHHHHHHHHHHHhcC
Q 003273 620 ELIEG-------MPME--------P--TPIIWVALLN---GCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 620 ~~~~~-------~~~~--------p--~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
++|.+ .... + +......++. .++..|..|.|..+++-+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33332 1110 1 1122222333 3578899999999999999984
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.37 E-value=5.4e+02 Score=24.39 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred HHhcCCHHHHHHHHhhcCC------CChhHHHHHHH-HHHHcCC--hHHHHHHHHHHHHc
Q 003273 507 YSRSGDIDTARVVFDNLKQ------RNVVSWTSLMT-GYGMHGL--GDKAHWAFDQMRKE 557 (834)
Q Consensus 507 y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 557 (834)
....|++++|..-++++.+ .-...|+.+.. +++.++. +-+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 4456777777777776651 23345666555 6666665 44566665555443
No 452
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.25 E-value=1.6e+02 Score=31.73 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 622 IEGMPMEPT--PIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 622 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
|......|. ..++.+-++.+.+++|+..|-..+++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 333344444 346777888899999999999999999999985
No 453
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.25 E-value=4.8e+02 Score=26.36 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=33.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHH-----cCChHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK----QRNVVSWTSLMTGYGM-----HGLGDKAHWAF 551 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~-----~g~~~~A~~l~ 551 (834)
+.+...-|-.|.|.|....+.++-.... ..+...|.+++.-|.. .|.+++|.++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3444445566777777777766665554 2344456666655544 57777777766
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.19 E-value=2e+02 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=7.1
Q ss_pred HHhcCCHHHHHHHHHHh
Q 003273 573 CSHSGMVDQGLKYFDSM 589 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m 589 (834)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33444444444444433
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.16 E-value=3.8e+02 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888888776
No 456
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.04 E-value=9e+02 Score=26.82 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=77.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHH
Q 003273 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508 (834)
Q Consensus 429 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 508 (834)
+++..+.++-...-...+..+|+. +.-+...|..++..+... ..+.--.++..+++..+ .+......|.+.|-
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~----~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yE 143 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLE----YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHH
Confidence 344444444444444444444443 222333344444444333 23333444444444444 45555566777776
Q ss_pred hcCCHHHHHHHHhhcCC------CCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCC
Q 003273 509 RSGDIDTARVVFDNLKQ------RNV---VSWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDGVTFLVLLYACSHSGM 578 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~ 578 (834)
+ ++.+.+...|.++.. .+. ..|..++.-- ..+.+..+.+..+.... |..--.+.+.-+-.-|+...+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6 777777777776641 111 1455554321 23455555555555442 223334555555566777777
Q ss_pred HHHHHHHHHHhHH
Q 003273 579 VDQGLKYFDSMSK 591 (834)
Q Consensus 579 ~~~a~~~~~~m~~ 591 (834)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776653
No 457
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=26.98 E-value=1.2e+03 Score=28.19 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
..++..-..-....|++..|.+++.++.++.+-.++.++|..+++++...|.-
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 33333333444556677777777777777666777777777777776666654
No 458
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=26.22 E-value=6.6e+02 Score=26.14 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=71.7
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHH------cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHH
Q 003273 512 DIDTARVVFDNLK---QRNVVSWTSLMTGYGM------HGLGDKAHWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQ 581 (834)
Q Consensus 512 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 581 (834)
-++++..++++.. .|......+.|.++-. .-++.....+|+-+.. +.|++ +|.|--+ +.+...-.+.
T Consensus 271 lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHh
Confidence 3567777777665 5666666666665421 2357777778888877 67774 4454433 4455555677
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
++...+.+..+-.+.--...+..-.+++.+.|+.+||...|++.
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 77777766543233333334456678888899999999888876
No 459
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.51 E-value=7.4e+02 Score=25.36 Aligned_cols=256 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCChhHHHHHHHhcccCCCCCCchhHHHHHhcc-ChHHHHHHHHHHHHhcCCCCCchHHHHHHhhCC
Q 003273 3 QVNGVFPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCK-SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHN 81 (834)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 81 (834)
....++-++...++....+...+-.-+..+|.+|...+..++..-- .-.-+....-.+.+.-+.....+.++..+-+-+
T Consensus 131 e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~ 210 (412)
T KOG2297|consen 131 EMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGK 210 (412)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcC
Q ss_pred CchhHHHHhcccCCCCcchhhHHH--------HHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchH
Q 003273 82 APSPALSLLQRISPSPFSVFWWNA--------LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153 (834)
Q Consensus 82 ~~~~A~~~f~~~~~~~~~~~~~~~--------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 153 (834)
--+.-.++| |+...++..+.- =+.-|.+......|..-++.-....+. +...+.+
T Consensus 211 md~rLmeff---Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s--------------~e~p~~e 273 (412)
T KOG2297|consen 211 MDDRLMEFF---PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVS--------------EEDPVKE 273 (412)
T ss_pred hHhHHHHhc---CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------cCCCHHH
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC
Q 003273 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 233 (834)
......+-.+..--|++.+-..+=+.....+.+..-.++..+-.-+ ....|.-|+.+++..|+.+-.+-+=-+|
T Consensus 274 vi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr---hlK~yaPLL~af~s~g~sEL~Ll~KvQe--- 347 (412)
T KOG2297|consen 274 VILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---HLKQYAPLLAAFCSQGQSELELLLKVQE--- 347 (412)
T ss_pred HHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---HHHhhhHHHHHHhcCChHHHHHHHHHHH---
Q ss_pred CCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 003273 234 VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308 (834)
Q Consensus 234 ~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (834)
.|-+-..-+++|.++. +.|+-+-..++.-|-+......-.-.+++|..
T Consensus 348 ---------------------------~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 348 ---------------------------YCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred ---------------------------HHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=1e+03 Score=26.87 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHhHH--hcCCCCChHHHHHHHHHHhh
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS-HSGMVDQGLKYFDSMSK--EFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~--~~~~~p~~~~~~~l~~~~~~ 611 (834)
|..+.+.|.+..|++.-+-+......-|+.....+|..|+ ++.+++--+++++.... ++..-|+..--.+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4456778888888888888877332224666667777654 55666666666665532 22344554444455555555
Q ss_pred cCC---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCCCchHHHHHHHHHhcC
Q 003273 612 ANR---LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLEL-----ESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 612 ~g~---~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g 679 (834)
... -..|...+.++. +--+.+..-|+..|..+.+ | +-+-+++ +-.-..++..++.+|+.-.
T Consensus 429 ~~~~~~rqsa~~~l~qAl-~~~P~vl~eLld~~~l~~d---a---~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~ 497 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL-KHHPLVLSELLDELLLGDD---A---LTKDLKFDGSSAENSELPALMLLVKLYANRN 497 (665)
T ss_pred cCChhhHHHHHHHHHHHH-HhCcHHHHHHHHhccCCch---h---hhhhhcccccccccccchHHHHHHHHHHhhh
Confidence 444 344555555553 1122344455555544432 1 1111111 1112457888888887554
No 461
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.71 E-value=3.2e+02 Score=30.03 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--------CCchHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE--------KDGSYTLL 671 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~l 671 (834)
..|-.++.-|...+++++|.++.+-.. +...|.+|......+.+...++.+|..+.+++-- -+.--..+
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~m 650 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQM 650 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHH
Confidence 335556666777777888877776654 4567777777777777777777777666554310 01122334
Q ss_pred HHHHHhcCCchhHHHHHH
Q 003273 672 SNIYANAGRWKDVARIRS 689 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~ 689 (834)
+....-.|+..||..++.
T Consensus 651 A~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 651 AENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHhccchhhhHHHH
Confidence 444555677777766543
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.29 E-value=3.2e+02 Score=31.45 Aligned_cols=146 Identities=15% Similarity=0.161 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH----------HHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCCC
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT----------FLVLLYACSHSGMVDQGLKYFDSMSKEF-GISAR 598 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~ 598 (834)
+-..|+-.|....+++..+++.+.+.. -||..- |.-.++-=-+-|+-++|+...-.+.++. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 444556667777777777777777776 243211 2222222234566677776665555432 34555
Q ss_pred hHHHHH--HHHH-----HhhcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 599 AEHYAC--IVDL-----LGRANRLDEAVELIEGM-PMEPTPI---IWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 599 ~~~~~~--l~~~-----~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
...... .-|+ |..++..+.|.+.|++. ..+|+.. .+.+|+-+-.+| ++...+. ..+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~--Fens~El-----------q~I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH--FENSLEL-----------QQI 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh--ccchHHH-----------HHH
Confidence 321110 0011 22334445555555554 3334322 223333221111 0100110 012
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHH
Q 003273 668 YTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 668 ~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
-..|.+++.+.|..+.-..+|+..
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVA 370 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHH
Confidence 345666777778777777766554
No 463
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=24.01 E-value=8.9e+02 Score=25.74 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=60.6
Q ss_pred ChhHHHHH---HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCC---
Q 003273 562 DGVTFLVL---LYACSHSGMVDQGLKYFDSMSKEFGISAR--AEHYACIVDLLG-RANRLDEAVELIEGMPM--EPT--- 630 (834)
Q Consensus 562 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~p~--- 630 (834)
|..-|.++ +..+.+.|-+..|.++.+-+. .+.|+ +...-.+||.|+ |+++++--+++++.... ..+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 34444444 346778888888888887775 55554 444555677765 77777777777776432 111
Q ss_pred ---HHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHhcCC
Q 003273 631 ---PIIWVALLNGCRIHAN--------------VELGELAANRLLELES 662 (834)
Q Consensus 631 ---~~~~~~ll~~~~~~g~--------------~~~a~~~~~~~~~~~p 662 (834)
-..++.-+.-+...++ .+.|...+.+++...|
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 1344444444443333 3788888888888877
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.65 E-value=3.9e+02 Score=25.10 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=14.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHH
Q 003273 606 VDLLGRANRLDEAVELIEGMPMEPTPI 632 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~p~~~ 632 (834)
+-.+.+.|.+++|.+++++.-..|+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCch
Confidence 334556666666666666653344433
No 465
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.51 E-value=8.5e+02 Score=25.34 Aligned_cols=78 Identities=4% Similarity=-0.072 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhC---CChhHHHHHHHH
Q 003273 153 CGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS---GDAEGGLMLFAR 229 (834)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~ 229 (834)
.-..+++.+++.. +.+......++..+.+..+.+...+.++++....+.+...|-..|.....+ -.+.....+|.+
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3456777777663 566777777888888888888888888888777555677787777665442 234555555544
Q ss_pred hh
Q 003273 230 MT 231 (834)
Q Consensus 230 m~ 231 (834)
..
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 43
No 466
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=22.51 E-value=32 Score=24.71 Aligned_cols=13 Identities=46% Similarity=0.912 Sum_probs=9.5
Q ss_pred cccccCCcchhHH
Q 003273 790 NLRICGDCHSAIT 802 (834)
Q Consensus 790 nl~~~~~~h~~~~ 802 (834)
-.-+|+|||.--.
T Consensus 19 miYiCgdC~~en~ 31 (62)
T KOG3507|consen 19 MIYICGDCGQENT 31 (62)
T ss_pred EEEEecccccccc
Confidence 3568999997544
No 467
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.40 E-value=1.2e+03 Score=26.66 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHh
Q 003273 204 IVSWNTIVAAYAQSGDAEGGLMLFARM 230 (834)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (834)
..-|+ .+..+.-.|.+++|.++++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 34455 566666677777777776444
No 468
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.12 E-value=4e+02 Score=29.84 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHhCCChHHHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+...+.|...+|..++.+..... ..+.++-.+..+|....+.+.|++.|++.++
T Consensus 650 ~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 650 NLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 33334444444444444332111 2233444444555555555555555555544
No 469
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.90 E-value=8.8e+02 Score=24.94 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred CHHHHHHHHhhc-C-CCChhHHHHHHHHHHHc----C-ChHHHHH--------HHHH-HHHcCCCCC--h----hHHHHH
Q 003273 512 DIDTARVVFDNL-K-QRNVVSWTSLMTGYGMH----G-LGDKAHW--------AFDQ-MRKEGLAPD--G----VTFLVL 569 (834)
Q Consensus 512 ~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~----g-~~~~A~~--------l~~~-m~~~g~~p~--~----~t~~~l 569 (834)
.+..+.++...+ . +++...|..++..+... . ..+.... ++.. +.+.|..+. . ..+...
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 367777888877 4 67888888877654332 1 1111111 2222 222355543 1 222222
Q ss_pred -HH-HHHhcCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003273 570 -LY-ACSHSGMVDQGLKYFDSMSKEFGI---SARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644 (834)
Q Consensus 570 -l~-a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 644 (834)
+. +|...+-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++......++.+....
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 33 342233367888888888753111 4466667777788888888777666666665556788888999998888
Q ss_pred CcHHHHHHHHHHHHhcC-CCCCchHHHHHHH
Q 003273 645 ANVELGELAANRLLELE-SEKDGSYTLLSNI 674 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~ 674 (834)
.+.+.-.++++.++.-+ -.....+..+..+
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHH
Confidence 88888888999888843 1123344444444
No 470
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.68 E-value=9e+02 Score=24.96 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC--CChh---HHHHHHHHHHHcCChHHHHHHHHHH
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQ--RNVV---SWTSLMTGYGMHGLGDKAHWAFDQM 554 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~--~~~~---~~~~li~~~~~~g~~~~A~~l~~~m 554 (834)
..|.-+-.|.|++.+|.+.|+.+.+ |-.. ....+|.++....-+.+...++-+-
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555678999999999988763 3111 2334566665554444444444443
No 471
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.49 E-value=1.6e+03 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=22.1
Q ss_pred eeHHHHHHHHHhcC--ChhHHHHHHHHHHHC
Q 003273 316 VTWSAVIAGYAQRG--HGHEALDVFRQMQFC 344 (834)
Q Consensus 316 ~~~~~li~~~~~~g--~~~~A~~l~~~m~~~ 344 (834)
.-...+|.+|++.+ +.++|+.+..++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34556778888887 788888888888764
No 472
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=21.49 E-value=6e+02 Score=22.84 Aligned_cols=77 Identities=10% Similarity=0.188 Sum_probs=55.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC---------CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK---------QRNVVSWTSLMTGYGMHGL-GDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
.|+++.-...-+++.--..+++.+. ..+..+|.+++.+.++..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555556555555555543 2466689999999866655 34578889999988899999999999
Q ss_pred HHHHHhc
Q 003273 570 LYACSHS 576 (834)
Q Consensus 570 l~a~~~~ 576 (834)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9998775
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.06 E-value=7.7e+02 Score=26.44 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHh--hcCCHHHHHHHHHhCC
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARAE--HYACIVDLLG--RANRLDEAVELIEGMP 626 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~ 626 (834)
...+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455789999999999999864 555554 5666666665 4567889999998874
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.95 E-value=3.1e+02 Score=25.34 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
+..-.|.++++.+.+. +...+..+-..-++.+.+.|-+.
T Consensus 39 ~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 39 PGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3334455555555432 33333333333445555555443
No 475
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.62 E-value=1.5e+03 Score=27.10 Aligned_cols=421 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHccCCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCCh
Q 003273 143 KACGELPSSRCGSSVHAVICSSGFDSN--VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220 (834)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 220 (834)
+.|...|.++.|.++-+. .|+ ..++..-.+.|...+++..|-+.+-++.+. +..+.--+....+.
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~-------FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSS-------FEEVALKFLEINQE 432 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh-------HHHHHHHHHhcCCH
Q ss_pred hHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcC-cHHHHHHHHHhcC-------------CCChhHHHHH
Q 003273 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCG-MMEEAKKVFERMK-------------VKDVVSWNAM 286 (834)
Q Consensus 221 ~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g-~~~~A~~~~~~~~-------------~~d~~~~~~l 286 (834)
+ +++.|-.=+-. .+.|...+-..+|....----+..-.... ..+++..-++.-. ..+...+.+.
T Consensus 433 ~-~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 433 R-ALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred H-HHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH-------------------------
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM------------------------- 341 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m------------------------- 341 (834)
.......|+.++...+-.-|.. |..++.-+.+.|.+++|++++..-
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~w 581 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAW 581 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHH
Q ss_pred HHCCCCCCHhHHHHHHHhhhhh---chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003273 342 QFCGLEPNVVTLVSLLSGCASV---GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418 (834)
Q Consensus 342 ~~~g~~pd~~t~~~ll~a~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 418 (834)
...+-.-+..-...+++-+.+. .....+.......+.. ....+..++|.++.+|++..+-+.-..+-....
T Consensus 582 m~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~------l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~ 655 (911)
T KOG2034|consen 582 MAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEV------LGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKF 655 (911)
T ss_pred HHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHh------ccCcCHHHHHHHHHHhhcCCccchHHHHHHHhh
Q ss_pred CCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchh
Q 003273 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498 (834)
Q Consensus 419 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 498 (834)
..+....-..--+..|.+.+....+..++..|.. |...+....... .+.|+.+-......... .-..
T Consensus 656 ~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l-----------~~~aVdlAL~~d-~dlak~~A~~~ee~e~l-rKkL 722 (911)
T KOG2034|consen 656 MKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNL-----------FEDAVDLALQFD-IDLAKVIANDPEEDEDL-RKKL 722 (911)
T ss_pred ccccceecHHHHHHHHHHhCccceeeeHHHHHHH-----------HHHHHHHHhhcC-HHHHhhhhcChhhHHHH-HHHH
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGM 578 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 578 (834)
-.+.-=.+..+..++.+|...+..-.--...-.--...-+..-++.++|+.-+-+--. +-...+-.-+..++..+.+
T Consensus 723 WLkIAkh~v~~~~~ikk~i~~Lk~~~lLkiedlLpffpdf~~id~~keaic~~L~~~n---~rieel~~em~eat~~a~~ 799 (911)
T KOG2034|consen 723 WLKIAKHVVKQENDIKKAIRFLKENELLTIEDLLPFFPDFTKIDNLKEAICDFLEDYN---KRIEELQEEMIEATELADE 799 (911)
T ss_pred HHHHHHHHHHhhccHHHHHHHhccCcccchhhhhccccchhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
+....+-+..--. -+.|+.....|..-.+.+
T Consensus 800 I~~~~~~l~~ry~--v~ep~d~C~~C~~~ll~~ 830 (911)
T KOG2034|consen 800 IRTEISKLRQRYR--VLEPQDSCDHCGRPLLIK 830 (911)
T ss_pred HHhHHHHhhcceE--EecCccchHHhcchhhcC
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.48 E-value=2.2e+02 Score=17.97 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHH
Q 003273 646 NVELGELAANRLLELESEKDGSYTLL 671 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l 671 (834)
.++.|..+|++.+...|+ +.++...
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 357788888888888874 5555443
No 477
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=7.4e+02 Score=24.54 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+..+-.++...|++-++++-..+. ... .|+-.|---..+....-|..+|..-+.++++++|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 334455566667777777666555 222 33445544455555556788999999999999995
No 478
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.05 E-value=1.1e+02 Score=31.51 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCcHHHHHHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPI-IWVALLNGCRIHANVELGELA 653 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 653 (834)
.|.+++|++.|...++ --.|....|..-...+.+.++...|+.-+... .+.||.. -|..-..+-+..|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3445555555554442 11222334444444455555555555544433 2334422 233333445666777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 654 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++.+.+++- +..+-..|-.+.-..+..++-.+.+.+.+
T Consensus 205 l~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 205 LALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 777777765 24444555556666666666555554444
Done!