Query 003273
Match_columns 834
No_of_seqs 819 out of 5108
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-41 4.2E-46 392.9 31.2 505 74-677 60-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5E-40 1.7E-44 379.4 37.9 483 180-694 63-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-27 2.6E-31 253.4 37.7 375 178-680 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 6.2E-25 2.1E-29 238.3 39.0 352 288-693 7-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 3.9E-27 1.3E-31 259.9 19.9 209 119-368 9-228 (501)
6 4g26_A Pentatricopeptide repea 99.9 2E-26 6.8E-31 254.2 18.0 210 188-404 8-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 6E-27 223.7 33.6 326 278-690 24-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 5.5E-22 1.9E-26 223.7 33.0 433 204-694 6-478 (514)
9 2gw1_A Mitochondrial precursor 99.9 1.1E-21 3.9E-26 221.1 33.4 447 140-671 11-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 3.8E-21 1.3E-25 213.0 32.7 376 191-683 13-443 (450)
11 3fp2_A TPR repeat-containing p 99.9 6.3E-21 2.2E-25 216.4 31.8 423 170-694 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.1E-20 7.3E-25 212.0 30.0 236 393-669 245-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.4E-18 4.8E-23 185.5 31.6 316 279-678 2-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 9E-18 3.1E-22 179.2 32.3 306 315-694 3-335 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 3.6E-14 1.2E-18 165.0 59.5 295 351-692 986-1307(1630)
16 3hym_B Cell division cycle pro 99.8 1.6E-17 5.4E-22 175.1 28.3 182 498-681 126-321 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 5.2E-14 1.8E-18 163.7 52.3 417 138-625 988-1442(1630)
18 2ooe_A Cleavage stimulation fa 99.8 2.7E-15 9.3E-20 169.3 39.9 425 159-663 3-495 (530)
19 3hym_B Cell division cycle pro 99.8 8.2E-17 2.8E-21 169.6 25.0 221 467-693 62-298 (330)
20 2ooe_A Cleavage stimulation fa 99.8 1E-14 3.5E-19 164.6 42.4 399 278-694 11-492 (530)
21 1fch_A Peroxisomal targeting s 99.7 1.4E-16 4.7E-21 170.9 24.0 253 290-590 35-312 (368)
22 1b89_A Protein (clathrin heavy 99.7 2.8E-16 9.7E-21 164.6 23.6 283 78-446 14-304 (449)
23 1fch_A Peroxisomal targeting s 99.7 2.4E-16 8.1E-21 169.0 23.7 281 401-691 35-356 (368)
24 1b89_A Protein (clathrin heavy 99.7 2.3E-16 7.9E-21 165.3 22.4 350 261-692 15-383 (449)
25 4g1t_A Interferon-induced prot 99.7 1.2E-15 4E-20 169.8 29.0 373 280-705 51-470 (472)
26 2xm6_A Protein corresponding t 99.7 1.8E-14 6.1E-19 160.9 37.8 369 277-677 36-452 (490)
27 4eqf_A PEX5-related protein; a 99.7 1.9E-16 6.4E-21 169.7 19.8 229 314-590 64-308 (365)
28 4g1t_A Interferon-induced prot 99.7 2.2E-15 7.7E-20 167.5 26.6 394 168-672 49-471 (472)
29 2xm6_A Protein corresponding t 99.7 9.8E-14 3.4E-18 154.9 38.6 383 169-663 38-470 (490)
30 4eqf_A PEX5-related protein; a 99.7 1.2E-15 4.2E-20 163.4 21.5 231 423-694 64-310 (365)
31 3mkr_A Coatomer subunit epsilo 99.7 3.7E-15 1.3E-19 153.2 24.3 241 397-686 40-286 (291)
32 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.3E-19 149.3 26.6 243 401-694 9-264 (291)
33 3cv0_A Peroxisome targeting si 99.7 8.6E-16 2.9E-20 161.5 17.6 258 392-692 22-313 (327)
34 3cv0_A Peroxisome targeting si 99.7 9.2E-15 3.2E-19 153.6 25.4 261 314-624 20-311 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 3.4E-16 1.2E-20 176.4 9.6 153 280-438 127-286 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.6 5.2E-16 1.8E-20 174.9 10.0 130 495-625 125-262 (1134)
37 2pl2_A Hypothetical conserved 99.6 5.5E-14 1.9E-18 137.9 19.4 193 495-692 3-212 (217)
38 3u4t_A TPR repeat-containing p 99.5 4.5E-13 1.5E-17 136.6 20.2 247 393-679 5-269 (272)
39 3uq3_A Heat shock protein STI1 99.5 6.1E-13 2.1E-17 134.1 20.7 92 601-692 141-234 (258)
40 3uq3_A Heat shock protein STI1 99.5 1.1E-12 3.7E-17 132.3 22.2 235 424-674 5-256 (258)
41 2h6f_A Protein farnesyltransfe 99.5 3.8E-13 1.3E-17 143.0 19.5 245 390-678 96-366 (382)
42 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.2E-13 1.1E-17 137.8 17.3 214 465-688 47-269 (275)
43 2pl2_A Hypothetical conserved 99.5 1.2E-12 4.3E-17 128.1 18.4 195 388-625 2-211 (217)
44 2vq2_A PILW, putative fimbrial 99.5 5.2E-12 1.8E-16 124.2 22.5 197 495-694 6-211 (225)
45 2ho1_A Type 4 fimbrial biogene 99.5 7.1E-12 2.4E-16 126.0 23.2 203 424-667 37-245 (252)
46 3u4t_A TPR repeat-containing p 99.5 8.5E-12 2.9E-16 127.0 24.1 243 315-640 3-264 (272)
47 2ho1_A Type 4 fimbrial biogene 99.5 5E-12 1.7E-16 127.1 21.7 196 497-695 37-239 (252)
48 3sf4_A G-protein-signaling mod 99.4 3.3E-12 1.1E-16 138.5 20.6 274 387-693 5-335 (406)
49 3e4b_A ALGK; tetratricopeptide 99.4 1.1E-11 3.7E-16 136.1 24.7 250 391-692 141-419 (452)
50 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-12 5.2E-17 129.9 16.5 210 423-675 22-237 (243)
51 2vq2_A PILW, putative fimbrial 99.4 8.2E-12 2.8E-16 122.8 21.2 207 424-671 8-222 (225)
52 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.2E-12 1.4E-16 129.4 19.4 241 293-586 18-269 (275)
53 2q7f_A YRRB protein; TPR, prot 99.4 2.7E-12 9.4E-17 128.1 17.4 196 495-694 21-222 (243)
54 2h6f_A Protein farnesyltransfe 99.4 2.9E-12 9.8E-17 136.2 18.3 225 424-693 97-347 (382)
55 3ro2_A PINS homolog, G-protein 99.4 8.3E-12 2.8E-16 131.1 21.0 268 394-694 8-332 (338)
56 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.3E-16 117.4 19.8 164 527-694 4-170 (184)
57 4e6h_A MRNA 3'-END-processing 99.4 6.5E-10 2.2E-14 126.0 36.7 198 464-665 346-575 (679)
58 4a1s_A PINS, partner of inscut 99.4 1.9E-12 6.5E-17 140.8 15.6 271 391-694 48-372 (411)
59 3e4b_A ALGK; tetratricopeptide 99.4 2.3E-11 8E-16 133.4 24.3 344 286-696 9-389 (452)
60 1ouv_A Conserved hypothetical 99.4 9.5E-11 3.2E-15 119.4 26.9 224 423-696 5-253 (273)
61 3sf4_A G-protein-signaling mod 99.4 4.5E-12 1.5E-16 137.4 16.5 155 529-683 188-365 (406)
62 4abn_A Tetratricopeptide repea 99.4 4.7E-12 1.6E-16 139.9 15.9 193 495-691 100-318 (474)
63 1ouv_A Conserved hypothetical 99.4 6.7E-11 2.3E-15 120.5 23.1 227 389-664 4-255 (273)
64 4a1s_A PINS, partner of inscut 99.3 1.6E-11 5.3E-16 133.6 16.3 281 281-662 49-374 (411)
65 4e6h_A MRNA 3'-END-processing 99.3 9.8E-09 3.3E-13 116.4 38.6 464 116-611 48-586 (679)
66 3ro2_A PINS homolog, G-protein 99.3 2.5E-11 8.7E-16 127.4 16.3 121 282-439 7-138 (338)
67 3vtx_A MAMA; tetratricopeptide 99.3 6.3E-11 2.2E-15 112.5 17.6 166 495-664 3-174 (184)
68 4gyw_A UDP-N-acetylglucosamine 99.3 3.6E-11 1.2E-15 138.1 18.5 161 528-693 9-173 (723)
69 3ulq_A Response regulator aspa 99.3 4.3E-10 1.5E-14 120.9 25.6 233 396-660 108-368 (383)
70 2ond_A Cleavage stimulation fa 99.3 3E-10 1E-14 117.9 22.4 217 408-666 33-276 (308)
71 4i17_A Hypothetical protein; T 99.2 4.7E-10 1.6E-14 110.7 20.6 178 497-676 7-225 (228)
72 2ond_A Cleavage stimulation fa 99.2 8.7E-10 3E-14 114.4 22.7 197 495-695 48-271 (308)
73 3ulq_A Response regulator aspa 99.2 1.6E-10 5.6E-15 124.2 17.8 231 430-694 109-368 (383)
74 4abn_A Tetratricopeptide repea 99.2 2.6E-10 8.9E-15 125.9 19.1 177 513-694 84-287 (474)
75 3nf1_A KLC 1, kinesin light ch 99.2 2.7E-11 9.2E-16 125.8 10.2 174 387-591 23-223 (311)
76 3nf1_A KLC 1, kinesin light ch 99.2 3E-11 1E-15 125.5 10.2 240 424-694 27-307 (311)
77 3as5_A MAMA; tetratricopeptide 99.2 4.5E-10 1.5E-14 106.3 17.1 161 498-694 9-173 (186)
78 3as5_A MAMA; tetratricopeptide 99.2 1.2E-09 4E-14 103.3 18.4 167 462-666 9-179 (186)
79 4i17_A Hypothetical protein; T 99.2 9.4E-10 3.2E-14 108.5 18.1 153 526-681 5-169 (228)
80 1hz4_A MALT regulatory protein 99.1 1E-08 3.5E-13 109.5 26.8 267 395-694 18-322 (373)
81 3q15_A PSP28, response regulat 99.1 9E-09 3.1E-13 110.2 24.5 233 395-659 105-364 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.1 7.9E-10 2.7E-14 127.0 15.0 164 495-663 7-177 (723)
83 3q15_A PSP28, response regulat 99.1 5.8E-09 2E-13 111.7 20.7 305 386-693 5-364 (378)
84 1hz4_A MALT regulatory protein 99.0 3.1E-08 1.1E-12 105.8 25.1 276 283-590 17-320 (373)
85 3edt_B KLC 2, kinesin light ch 99.0 3.7E-09 1.3E-13 107.7 15.2 219 474-693 14-280 (283)
86 3qky_A Outer membrane assembly 99.0 1.8E-08 6.3E-13 101.5 19.1 204 495-740 13-247 (261)
87 3edt_B KLC 2, kinesin light ch 99.0 8.6E-09 2.9E-13 104.9 15.7 163 147-343 13-197 (283)
88 1qqe_A Vesicular transport pro 99.0 1.9E-08 6.4E-13 103.3 18.2 164 498-663 78-272 (292)
89 1qqe_A Vesicular transport pro 98.9 1.1E-08 3.7E-13 105.1 15.6 198 476-691 32-266 (292)
90 3qky_A Outer membrane assembly 98.9 2.5E-08 8.6E-13 100.5 17.5 202 461-683 15-250 (261)
91 4ga2_A E3 SUMO-protein ligase 98.9 2.1E-09 7.3E-14 97.8 7.6 137 539-680 8-149 (150)
92 3qou_A Protein YBBN; thioredox 98.9 4E-08 1.4E-12 100.4 17.1 173 515-692 104-282 (287)
93 2yhc_A BAMD, UPF0169 lipoprote 98.9 9.5E-08 3.3E-12 93.7 18.9 181 496-696 3-215 (225)
94 2pzi_A Probable serine/threoni 98.8 9.3E-09 3.2E-13 118.8 12.4 147 528-680 433-583 (681)
95 2fo7_A Synthetic consensus TPR 98.8 6.6E-08 2.3E-12 85.5 14.8 128 530-693 3-131 (136)
96 2fo7_A Synthetic consensus TPR 98.8 9.6E-08 3.3E-12 84.4 15.8 122 499-624 3-128 (136)
97 3mv2_B Coatomer subunit epsilo 98.8 3.4E-07 1.2E-11 91.9 20.0 174 516-694 85-282 (310)
98 2pzi_A Probable serine/threoni 98.8 1.4E-07 4.8E-12 108.9 19.6 168 495-668 431-610 (681)
99 2r5s_A Uncharacterized protein 98.8 3.9E-08 1.4E-12 92.2 12.3 154 535-693 13-172 (176)
100 2vsy_A XCC0866; transferase, g 98.8 1.4E-07 4.9E-12 106.9 19.3 159 510-672 2-169 (568)
101 3urz_A Uncharacterized protein 98.8 1.4E-07 4.7E-12 91.2 15.5 154 504-663 11-189 (208)
102 4ga2_A E3 SUMO-protein ligase 98.7 2.5E-08 8.4E-13 90.7 9.4 122 569-693 3-128 (150)
103 3rjv_A Putative SEL1 repeat pr 98.7 5.3E-07 1.8E-11 87.3 19.4 172 516-696 5-199 (212)
104 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4.2E-12 107.4 15.6 150 541-695 2-158 (568)
105 3mv2_B Coatomer subunit epsilo 98.7 1.2E-06 4E-11 88.1 19.9 242 401-668 23-290 (310)
106 4gco_A Protein STI-1; structur 98.7 1.4E-07 4.8E-12 82.6 11.8 114 559-674 8-124 (126)
107 3urz_A Uncharacterized protein 98.7 3.1E-07 1.1E-11 88.7 15.1 181 430-638 10-197 (208)
108 4gco_A Protein STI-1; structur 98.6 2.2E-07 7.7E-12 81.3 11.9 101 594-694 7-110 (126)
109 2r5s_A Uncharacterized protein 98.6 5.7E-07 2E-11 84.2 15.3 124 495-623 38-168 (176)
110 3gyz_A Chaperone protein IPGC; 98.6 1.7E-07 5.9E-12 84.7 11.1 102 594-695 30-134 (151)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 9E-07 3.1E-11 86.6 17.1 182 464-666 7-219 (225)
112 2ifu_A Gamma-SNAP; membrane fu 98.6 6.4E-07 2.2E-11 92.5 16.7 219 437-686 4-253 (307)
113 3qou_A Protein YBBN; thioredox 98.6 8.9E-07 3.1E-11 90.3 17.6 128 495-624 149-280 (287)
114 2vgx_A Chaperone SYCD; alterna 98.6 1.5E-07 5.1E-12 85.2 10.1 101 594-694 15-118 (148)
115 2uy1_A Cleavage stimulation fa 98.6 5.2E-06 1.8E-10 91.3 23.9 359 114-556 28-412 (493)
116 3dra_A Protein farnesyltransfe 98.6 2.9E-06 1E-10 86.2 20.2 214 437-693 46-286 (306)
117 2c2l_A CHIP, carboxy terminus 98.6 1.1E-07 3.7E-12 96.8 9.3 192 495-694 2-199 (281)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2E-06 7E-11 83.1 18.0 144 500-664 9-154 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.2E-06 4.3E-11 84.6 15.8 125 566-695 9-151 (213)
120 3dra_A Protein farnesyltransfe 98.5 7.8E-06 2.7E-10 83.0 21.9 231 400-673 42-301 (306)
121 2uy1_A Cleavage stimulation fa 98.5 7.6E-05 2.6E-09 82.0 31.4 214 409-659 197-412 (493)
122 2xcb_A PCRH, regulatory protei 98.5 1E-06 3.5E-11 79.0 12.7 96 599-694 18-115 (142)
123 2ifu_A Gamma-SNAP; membrane fu 98.5 7.8E-07 2.7E-11 91.9 12.2 197 473-692 3-222 (307)
124 1na0_A Designed protein CTPR3; 98.5 2.3E-06 7.8E-11 74.1 13.4 114 564-679 10-125 (125)
125 2vyi_A SGTA protein; chaperone 98.4 2.1E-06 7.3E-11 75.1 13.1 117 564-682 13-131 (131)
126 4f3v_A ESX-1 secretion system 98.4 2.9E-06 9.9E-11 84.1 14.9 216 403-673 18-249 (282)
127 2qfc_A PLCR protein; TPR, HTH, 98.4 5.9E-06 2E-10 84.5 17.9 163 531-693 78-265 (293)
128 1a17_A Serine/threonine protei 98.4 2.4E-06 8.2E-11 78.6 13.6 126 566-693 16-145 (166)
129 3rjv_A Putative SEL1 repeat pr 98.4 1E-05 3.5E-10 78.1 18.6 161 495-662 16-199 (212)
130 2lni_A Stress-induced-phosphop 98.4 2.2E-06 7.5E-11 75.4 12.7 114 564-680 17-133 (133)
131 3u3w_A Transcriptional activat 98.4 6.7E-06 2.3E-10 84.1 18.1 159 535-693 82-265 (293)
132 1p5q_A FKBP52, FK506-binding p 98.4 9.7E-07 3.3E-11 92.3 11.6 144 527-692 146-292 (336)
133 3upv_A Heat shock protein STI1 98.4 1.8E-06 6.1E-11 75.5 11.3 95 600-694 5-101 (126)
134 4f3v_A ESX-1 secretion system 98.4 1.4E-06 4.8E-11 86.3 11.2 181 509-694 18-237 (282)
135 2vgx_A Chaperone SYCD; alterna 98.4 1.2E-06 4.1E-11 79.1 9.2 110 559-670 16-128 (148)
136 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-06 3.6E-11 84.1 9.2 173 501-694 8-186 (198)
137 2e2e_A Formate-dependent nitri 98.3 2.8E-06 9.4E-11 79.4 11.1 117 576-694 23-144 (177)
138 2qfc_A PLCR protein; TPR, HTH, 98.3 1.5E-05 5.1E-10 81.5 16.8 162 499-660 77-266 (293)
139 1wao_1 Serine/threonine protei 98.3 1.1E-05 3.9E-10 88.4 16.6 115 505-623 14-134 (477)
140 3gyz_A Chaperone protein IPGC; 98.3 7.7E-06 2.6E-10 73.8 12.2 95 495-591 34-132 (151)
141 2e2e_A Formate-dependent nitri 98.3 5E-06 1.7E-10 77.6 11.4 126 539-668 21-152 (177)
142 1a17_A Serine/threonine protei 98.3 1.3E-05 4.5E-10 73.6 14.1 126 530-659 15-145 (166)
143 1hxi_A PEX5, peroxisome target 98.3 2.6E-06 9E-11 73.8 8.6 94 601-694 19-114 (121)
144 3gw4_A Uncharacterized protein 98.2 1.7E-05 5.7E-10 75.8 15.1 82 509-590 4-93 (203)
145 2xcb_A PCRH, regulatory protei 98.2 2.7E-06 9.2E-11 76.2 8.8 109 564-674 19-129 (142)
146 3q49_B STIP1 homology and U bo 98.2 8.1E-06 2.8E-10 72.3 11.4 97 598-694 8-106 (137)
147 1wao_1 Serine/threonine protei 98.2 5.6E-06 1.9E-10 90.9 12.3 115 573-690 16-135 (477)
148 3gw4_A Uncharacterized protein 98.2 3.2E-05 1.1E-09 73.8 16.4 153 539-693 3-175 (203)
149 3sz7_A HSC70 cochaperone (SGT) 98.2 5.4E-06 1.8E-10 76.3 10.4 95 600-694 12-108 (164)
150 2kck_A TPR repeat; tetratricop 98.2 6.3E-06 2.1E-10 69.7 10.1 96 600-695 7-107 (112)
151 3u3w_A Transcriptional activat 98.2 4.3E-05 1.5E-09 78.0 18.1 158 503-660 81-266 (293)
152 3q7a_A Farnesyltransferase alp 98.2 0.0001 3.6E-09 75.5 20.6 148 152-343 71-236 (349)
153 2c2l_A CHIP, carboxy terminus 98.2 2.1E-06 7.1E-11 87.2 7.9 64 389-452 36-100 (281)
154 1elw_A TPR1-domain of HOP; HOP 98.2 1.9E-05 6.5E-10 67.4 12.9 105 568-674 9-115 (118)
155 3dss_A Geranylgeranyl transfer 98.2 0.00024 8.4E-09 72.4 22.8 189 477-672 90-316 (331)
156 2dba_A Smooth muscle cell asso 98.2 2.3E-05 7.8E-10 70.3 13.7 77 600-676 66-144 (148)
157 4gcn_A Protein STI-1; structur 98.2 7.4E-06 2.5E-10 71.6 9.8 93 601-693 10-111 (127)
158 1elw_A TPR1-domain of HOP; HOP 98.2 1.3E-05 4.4E-10 68.4 11.0 97 598-694 3-101 (118)
159 3upv_A Heat shock protein STI1 98.1 1.9E-05 6.4E-10 68.8 11.9 108 566-675 7-122 (126)
160 2lni_A Stress-induced-phosphop 98.1 1.4E-05 4.8E-10 70.1 11.0 98 597-694 14-113 (133)
161 3sz7_A HSC70 cochaperone (SGT) 98.1 2.5E-05 8.5E-10 71.8 13.0 108 564-673 12-121 (164)
162 3rkv_A Putative peptidylprolyl 98.1 1.4E-05 4.6E-10 73.4 11.0 64 631-694 63-126 (162)
163 3q7a_A Farnesyltransferase alp 98.1 0.00034 1.1E-08 71.7 22.0 170 402-614 65-257 (349)
164 1na0_A Designed protein CTPR3; 98.1 4.8E-05 1.6E-09 65.5 13.8 89 500-590 12-104 (125)
165 2dba_A Smooth muscle cell asso 98.1 2.2E-05 7.7E-10 70.3 11.8 97 598-694 27-128 (148)
166 2hr2_A Hypothetical protein; a 98.1 9.3E-06 3.2E-10 72.5 8.7 63 632-694 58-131 (159)
167 2fbn_A 70 kDa peptidylprolyl i 98.1 5.7E-06 2E-10 78.9 7.7 95 600-694 39-151 (198)
168 4gcn_A Protein STI-1; structur 98.1 3.1E-05 1.1E-09 67.6 11.5 59 530-590 10-69 (127)
169 2vyi_A SGTA protein; chaperone 98.1 4.1E-05 1.4E-09 66.6 12.3 91 498-590 13-107 (131)
170 1p5q_A FKBP52, FK506-binding p 98.0 3.2E-05 1.1E-09 80.7 12.7 119 495-618 145-283 (336)
171 3q49_B STIP1 homology and U bo 98.0 3.5E-05 1.2E-09 68.1 11.0 99 563-663 9-109 (137)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.4E-05 1.5E-09 83.4 13.9 144 528-693 268-414 (457)
173 2hr2_A Hypothetical protein; a 98.0 1.1E-05 3.9E-10 71.9 7.4 111 530-671 13-142 (159)
174 2xev_A YBGF; tetratricopeptide 98.0 2.3E-05 7.8E-10 68.4 9.5 90 605-694 8-105 (129)
175 2kck_A TPR repeat; tetratricop 98.0 4.5E-05 1.5E-09 64.2 10.9 97 566-664 9-110 (112)
176 1dce_A Protein (RAB geranylger 98.0 0.00029 1E-08 78.6 20.1 169 511-683 43-244 (567)
177 1elr_A TPR2A-domain of HOP; HO 98.0 5.2E-05 1.8E-09 66.0 11.4 95 600-694 5-108 (131)
178 3k9i_A BH0479 protein; putativ 97.9 6.9E-06 2.3E-10 70.6 4.6 82 612-693 3-89 (117)
179 3ro3_A PINS homolog, G-protein 97.9 6.5E-05 2.2E-09 68.2 11.3 135 530-693 11-157 (164)
180 1elr_A TPR2A-domain of HOP; HO 97.9 3.5E-05 1.2E-09 67.1 9.1 114 529-676 5-123 (131)
181 3dss_A Geranylgeranyl transfer 97.9 0.001 3.6E-08 67.8 20.9 178 513-694 90-304 (331)
182 4b4t_Q 26S proteasome regulato 97.9 9.4E-05 3.2E-09 80.3 13.9 189 505-693 12-244 (434)
183 1hxi_A PEX5, peroxisome target 97.9 8.1E-05 2.8E-09 64.2 10.3 94 569-665 23-119 (121)
184 3n71_A Histone lysine methyltr 97.8 4.4E-05 1.5E-09 83.1 10.1 123 573-695 319-465 (490)
185 4b4t_Q 26S proteasome regulato 97.8 0.00016 5.6E-09 78.3 14.8 194 399-625 12-242 (434)
186 2xev_A YBGF; tetratricopeptide 97.8 0.00018 6.2E-09 62.5 12.2 71 601-671 41-116 (129)
187 1ihg_A Cyclophilin 40; ppiase 97.8 8.8E-05 3E-09 78.3 11.4 136 529-686 224-362 (370)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 2.9E-05 9.9E-10 81.0 7.6 147 528-694 179-328 (338)
189 3ro3_A PINS homolog, G-protein 97.8 0.00012 4E-09 66.4 10.9 96 496-591 8-117 (164)
190 3rkv_A Putative peptidylprolyl 97.8 7E-05 2.4E-09 68.5 9.1 77 599-675 63-142 (162)
191 3k9i_A BH0479 protein; putativ 97.8 4.5E-05 1.5E-09 65.4 7.0 93 576-669 3-99 (117)
192 2l6j_A TPR repeat-containing p 97.7 6.5E-05 2.2E-09 63.3 7.7 92 598-689 3-102 (111)
193 2if4_A ATFKBP42; FKBP-like, al 97.7 7.8E-05 2.7E-09 77.7 9.1 151 496-665 178-333 (338)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00032 1.1E-08 76.4 13.7 64 631-694 317-380 (457)
195 3ma5_A Tetratricopeptide repea 97.6 0.00017 5.8E-09 59.6 8.6 66 629-694 5-70 (100)
196 1na3_A Designed protein CTPR2; 97.6 0.00019 6.6E-09 57.7 8.8 81 599-679 9-91 (91)
197 1ihg_A Cyclophilin 40; ppiase 97.6 0.00023 7.8E-09 75.0 11.2 113 563-694 223-336 (370)
198 1zu2_A Mitochondrial import re 97.5 5.9E-05 2E-09 67.1 4.4 84 611-694 14-120 (158)
199 2kat_A Uncharacterized protein 97.5 0.00019 6.5E-09 61.1 7.2 77 618-694 4-82 (115)
200 3n71_A Histone lysine methyltr 97.5 0.00014 4.9E-09 79.1 7.5 115 608-740 318-450 (490)
201 2l6j_A TPR repeat-containing p 97.5 0.00013 4.4E-09 61.4 5.6 95 527-626 3-105 (111)
202 3qwp_A SET and MYND domain-con 97.4 0.00024 8.2E-09 76.2 7.3 113 609-739 297-427 (429)
203 3bee_A Putative YFRE protein; 97.3 0.00084 2.9E-08 54.3 8.1 67 629-695 4-73 (93)
204 1dce_A Protein (RAB geranylger 97.3 0.0035 1.2E-07 69.9 15.7 149 542-694 43-221 (567)
205 1zu2_A Mitochondrial import re 97.2 0.0004 1.4E-08 61.8 6.0 100 538-665 12-125 (158)
206 3lvg_A Clathrin heavy chain 1; 97.2 3.8E-06 1.3E-10 86.7 -8.5 472 82-687 40-534 (624)
207 3qww_A SET and MYND domain-con 97.2 0.00025 8.5E-09 75.9 4.8 82 612-693 311-410 (433)
208 1klx_A Cysteine rich protein B 97.1 0.0042 1.4E-07 54.6 11.6 87 607-695 33-127 (138)
209 3ma5_A Tetratricopeptide repea 97.0 0.0022 7.6E-08 52.7 8.6 63 527-591 6-69 (100)
210 2kat_A Uncharacterized protein 97.0 0.0014 4.9E-08 55.4 7.5 62 527-590 18-80 (115)
211 3ly7_A Transcriptional activat 97.0 0.015 5.1E-07 59.5 16.0 142 525-694 191-339 (372)
212 1klx_A Cysteine rich protein B 97.0 0.0024 8.1E-08 56.3 9.0 113 541-662 8-128 (138)
213 1na3_A Designed protein CTPR2; 96.9 0.0022 7.4E-08 51.3 7.3 64 631-694 9-72 (91)
214 3qww_A SET and MYND domain-con 96.7 0.0064 2.2E-07 64.9 10.9 92 576-667 311-423 (433)
215 3qwp_A SET and MYND domain-con 96.6 0.011 3.9E-07 63.1 12.2 69 601-669 331-414 (429)
216 1wy6_A Hypothetical protein ST 96.6 0.15 5.2E-06 42.8 15.6 140 539-697 18-157 (172)
217 2kc7_A BFR218_protein; tetratr 96.6 0.01 3.4E-07 48.3 9.0 64 605-668 6-72 (99)
218 3ly7_A Transcriptional activat 96.6 0.053 1.8E-06 55.4 15.9 74 525-603 274-347 (372)
219 1pc2_A Mitochondria fission pr 96.5 0.014 4.7E-07 51.2 9.7 66 629-694 30-100 (152)
220 2kc7_A BFR218_protein; tetratr 96.4 0.0066 2.2E-07 49.5 6.8 59 637-695 6-65 (99)
221 3lvg_A Clathrin heavy chain 1; 96.4 0.00052 1.8E-08 71.2 -0.1 163 70-260 57-219 (624)
222 3mkq_A Coatomer beta'-subunit; 96.2 0.17 5.8E-06 59.4 20.6 101 400-522 661-761 (814)
223 3u64_A Protein TP_0956; tetrat 95.6 0.028 9.5E-07 55.0 8.1 86 616-701 180-276 (301)
224 2v5f_A Prolyl 4-hydroxylase su 95.5 0.064 2.2E-06 44.1 9.0 71 602-672 8-87 (104)
225 3mkq_B Coatomer subunit alpha; 95.4 0.84 2.9E-05 41.0 16.3 130 504-657 12-141 (177)
226 3mkq_A Coatomer beta'-subunit; 95.2 0.39 1.3E-05 56.3 18.0 105 504-626 659-763 (814)
227 3mkq_B Coatomer subunit alpha; 95.0 1.3 4.3E-05 39.9 16.1 104 399-524 13-116 (177)
228 1pc2_A Mitochondria fission pr 94.6 0.37 1.3E-05 42.2 11.3 90 546-668 16-108 (152)
229 1nzn_A CGI-135 protein, fissio 94.4 0.16 5.5E-06 42.7 8.3 65 629-693 33-102 (126)
230 3bee_A Putative YFRE protein; 94.3 0.27 9.4E-06 39.2 9.3 67 597-663 4-75 (93)
231 1y8m_A FIS1; mitochondria, unk 93.7 1.3 4.4E-05 37.9 12.5 67 628-694 36-106 (144)
232 3u64_A Protein TP_0956; tetrat 93.6 0.44 1.5E-05 46.6 10.9 111 510-625 134-266 (301)
233 3lpz_A GET4 (YOR164C homolog); 93.3 7.4 0.00025 39.0 19.6 140 282-438 37-181 (336)
234 2wpv_A GET4, UPF0363 protein Y 93.1 6.8 0.00023 39.0 18.9 139 282-437 35-178 (312)
235 4gns_B Protein CSD3, chitin bi 92.8 0.31 1.1E-05 55.2 9.6 52 640-691 346-397 (754)
236 2v5f_A Prolyl 4-hydroxylase su 91.2 0.65 2.2E-05 37.8 7.6 65 630-694 4-75 (104)
237 1nzn_A CGI-135 protein, fissio 90.2 3 0.0001 35.0 10.6 73 597-669 33-112 (126)
238 1wy6_A Hypothetical protein ST 89.6 8.7 0.0003 32.4 13.9 81 509-591 73-153 (172)
239 3o48_A Mitochondria fission 1 89.4 1.6 5.6E-05 36.8 8.3 65 629-693 38-106 (134)
240 4h7y_A Dual specificity protei 89.0 2.8 9.7E-05 36.2 9.6 116 94-213 9-137 (161)
241 2wpv_A GET4, UPF0363 protein Y 88.5 21 0.00071 35.5 20.9 83 495-592 132-217 (312)
242 1qsa_A Protein (soluble lytic 88.5 34 0.0012 37.9 26.4 114 542-659 228-347 (618)
243 3lpz_A GET4 (YOR164C homolog); 88.0 23 0.0008 35.4 20.7 82 495-591 134-215 (336)
244 4ady_A RPN2, 26S proteasome re 87.8 46 0.0016 38.6 28.7 308 289-614 383-721 (963)
245 4h7y_A Dual specificity protei 86.5 1.3 4.5E-05 38.2 6.1 53 645-697 74-126 (161)
246 3ffl_A Anaphase-promoting comp 85.5 5.8 0.0002 35.0 9.8 31 598-628 121-151 (167)
247 4b4t_P 26S proteasome regulato 84.7 43 0.0015 35.4 22.5 97 319-417 141-244 (445)
248 2qx5_A Nucleoporin NIC96; mRNA 84.5 55 0.0019 36.4 20.1 44 284-328 156-199 (661)
249 2ff4_A Probable regulatory pro 81.8 3.2 0.00011 43.3 8.1 71 282-353 173-248 (388)
250 3txn_A 26S proteasome regulato 81.5 51 0.0017 34.0 16.8 157 501-658 23-208 (394)
251 4gns_B Protein CSD3, chitin bi 81.0 8.6 0.0003 43.5 11.6 128 284-418 252-398 (754)
252 3ffl_A Anaphase-promoting comp 81.0 11 0.00039 33.1 9.9 125 283-426 23-157 (167)
253 2p58_C Putative type III secre 80.4 11 0.00037 29.7 8.3 45 261-307 52-96 (116)
254 2uwj_G Type III export protein 78.7 11 0.00037 29.7 7.8 45 262-308 52-96 (115)
255 1qsa_A Protein (soluble lytic 78.4 87 0.003 34.6 28.9 105 71-196 76-180 (618)
256 1v54_E Cytochrome C oxidase po 77.1 14 0.00048 29.3 8.1 62 544-607 26-87 (109)
257 2ff4_A Probable regulatory pro 76.5 4.9 0.00017 41.9 7.5 67 634-700 174-245 (388)
258 3txn_A 26S proteasome regulato 75.3 55 0.0019 33.7 14.9 93 533-625 104-207 (394)
259 4fhn_B Nucleoporin NUP120; pro 73.4 84 0.0029 37.9 18.3 166 174-366 816-987 (1139)
260 1zbp_A Hypothetical protein VP 73.3 31 0.0011 33.2 11.3 121 538-666 7-135 (273)
261 4fhn_B Nucleoporin NUP120; pro 70.5 48 0.0016 40.1 15.2 143 466-617 817-989 (1139)
262 3o48_A Mitochondria fission 1 68.8 40 0.0014 28.4 9.7 35 633-667 80-114 (134)
263 2y69_E Cytochrome C oxidase su 65.9 30 0.001 29.1 8.1 60 546-607 71-130 (152)
264 1v54_E Cytochrome C oxidase po 64.7 34 0.0012 27.2 7.8 49 624-672 38-86 (109)
265 1y8m_A FIS1; mitochondria, unk 64.7 66 0.0023 27.5 11.6 35 633-667 79-113 (144)
266 2qx5_A Nucleoporin NIC96; mRNA 64.6 1.8E+02 0.0061 32.3 23.0 45 172-217 155-199 (661)
267 1zbp_A Hypothetical protein VP 61.3 14 0.00048 35.5 6.3 58 607-664 5-64 (273)
268 4ady_A RPN2, 26S proteasome re 58.7 2.7E+02 0.0091 32.4 35.5 222 399-625 382-620 (963)
269 4b4t_P 26S proteasome regulato 55.8 2E+02 0.0069 30.1 21.5 95 531-625 140-244 (445)
270 3kea_A K1L; tropism, ANK repea 55.3 71 0.0024 31.0 10.9 86 262-352 139-225 (285)
271 4b4t_R RPN7, 26S proteasome re 53.7 53 0.0018 34.5 10.1 96 499-594 133-239 (429)
272 3ltj_A Alpharep-4; protein eng 53.5 1.3E+02 0.0043 27.1 20.8 89 496-589 89-177 (201)
273 4b4t_R RPN7, 26S proteasome re 53.2 83 0.0029 32.9 11.5 96 530-625 133-234 (429)
274 2uwj_G Type III export protein 52.7 84 0.0029 24.8 9.1 58 506-566 48-105 (115)
275 1wdy_A 2-5A-dependent ribonucl 52.3 1.5E+02 0.005 28.2 12.8 18 178-195 77-94 (285)
276 2p58_C Putative type III secre 51.4 89 0.003 24.7 9.4 58 506-566 49-106 (116)
277 3ltm_A Alpha-REP4; protein eng 49.4 1.5E+02 0.0052 26.8 20.2 91 495-590 93-183 (211)
278 3esl_A Checkpoint serine/threo 49.0 1.6E+02 0.0054 26.9 11.4 83 514-598 61-149 (202)
279 3mv2_A Coatomer subunit alpha; 48.7 1.4E+02 0.0048 29.5 11.1 59 622-694 196-256 (325)
280 2y69_E Cytochrome C oxidase su 47.3 85 0.0029 26.5 7.8 51 622-672 79-129 (152)
281 3eiq_C Programmed cell death p 46.9 66 0.0023 32.6 8.9 63 501-563 221-288 (358)
282 3eu9_A Huntingtin-interacting 45.1 1.7E+02 0.0057 26.9 11.5 17 179-195 115-131 (240)
283 3esl_A Checkpoint serine/threo 42.2 2E+02 0.0069 26.2 13.3 102 617-744 62-169 (202)
284 1k1a_A B-cell lymphoma 3-encod 40.1 2.2E+02 0.0076 26.1 11.9 28 107-134 13-40 (241)
285 2nsz_A Programmed cell death p 37.4 1.4E+02 0.0048 24.9 8.2 69 283-352 10-80 (129)
286 1n11_A Ankyrin; clathrin, BAND 36.6 3.7E+02 0.013 27.6 15.9 19 177-195 51-69 (437)
287 2l0z_A Glycoprotein G2; zinc-b 35.2 13 0.00043 23.5 0.9 17 817-833 12-29 (42)
288 3hra_A Ankyrin repeat family p 34.8 2.4E+02 0.0082 24.9 10.6 33 318-350 141-173 (201)
289 4b4t_S RPN3, 26S proteasome re 34.2 4.6E+02 0.016 28.0 13.2 128 55-195 213-366 (523)
290 4a1g_A Mitotic checkpoint seri 31.7 2.5E+02 0.0086 24.2 9.0 48 650-697 84-133 (152)
291 3bqo_A Telomeric repeat-bindin 31.4 2.3E+02 0.0078 25.6 8.5 61 615-675 94-161 (211)
292 2lo3_A SAGA-associated factor 30.0 19 0.00065 22.9 1.0 13 790-802 16-28 (44)
293 2ion_A PDCD4, programmed cell 29.6 1.3E+02 0.0044 26.1 6.8 69 283-352 12-82 (152)
294 2nsz_A Programmed cell death p 29.4 2E+02 0.0069 23.9 7.8 62 501-562 11-77 (129)
295 3ltm_A Alpha-REP4; protein eng 29.0 3.2E+02 0.011 24.5 19.6 61 495-556 124-184 (211)
296 2zu6_B Programmed cell death p 28.6 67 0.0023 31.8 5.4 26 427-452 169-194 (307)
297 3eiq_C Programmed cell death p 26.9 1.7E+02 0.0058 29.6 8.1 26 427-452 220-245 (358)
298 2wvi_A Mitotic checkpoint seri 26.6 3.2E+02 0.011 23.9 8.8 48 650-697 79-128 (164)
299 4a1g_A Mitotic checkpoint seri 26.5 3.1E+02 0.011 23.6 10.3 53 545-598 82-135 (152)
300 1k1a_A B-cell lymphoma 3-encod 26.2 3.7E+02 0.013 24.4 12.3 19 73-91 12-30 (241)
301 2zu6_B Programmed cell death p 25.9 1.3E+02 0.0044 29.7 6.9 62 501-562 170-236 (307)
302 2d2s_A Exocyst complex compone 25.7 2E+02 0.007 26.9 8.0 29 596-624 88-116 (235)
303 1oyz_A Hypothetical protein YI 24.3 4.5E+02 0.016 24.8 21.9 50 277-330 34-83 (280)
304 3ljn_A Hypothetical protein; a 22.1 4.2E+02 0.014 26.3 10.6 23 145-167 91-113 (364)
305 2ion_A PDCD4, programmed cell 22.0 1.9E+02 0.0066 24.9 6.5 61 501-561 13-78 (152)
306 2wvi_A Mitotic checkpoint seri 21.7 4.1E+02 0.014 23.2 10.9 52 546-598 78-130 (164)
307 1n11_A Ankyrin; clathrin, BAND 21.0 6.7E+02 0.023 25.5 15.7 18 399-416 316-333 (437)
308 1qc6_A EVH1 domain from ENA/VA 20.8 27 0.00092 29.5 0.7 41 781-829 43-87 (130)
309 3t8k_A Uncharacterized protein 20.5 3.9E+02 0.013 23.5 8.8 90 261-350 15-109 (186)
310 2k0q_A Putative uncharacterize 20.2 22 0.00077 25.6 0.1 21 810-830 8-28 (74)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-41 Score=392.95 Aligned_cols=505 Identities=9% Similarity=-0.054 Sum_probs=341.2
Q ss_pred HHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchH
Q 003273 74 IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153 (834)
Q Consensus 74 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 153 (834)
...+.++|.+..+...|+.++.++. ..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 60 ANNTSTDGSFLKERNAQNTDSLSRE--DYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp C---------------------CHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred cccccccCccCCCCCccccchHHHH--HHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 3445677888888999998887777 9999999999999999999999999985 46788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCC----------------CCCcchHHHHHHHHHhC
Q 003273 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG----------------ICDIVSWNTIVAAYAQS 217 (834)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~----------------~~~~~~~~~li~~~~~~ 217 (834)
|..+++.+... ++++.+++.++.+|.++|++++|.++|+++.... +.+..+|+.++.+|.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999988654 6889999999999999999999999999644332 12588999999999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHH-HHhcCC----CChhHHHHHHHHHHc
Q 003273 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV-FERMKV----KDVVSWNAMVTGYSR 292 (834)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~-~~~~~~----~d~~~~~~li~~~~~ 292 (834)
|++++|+++|++|.+. .|+..+....+..+.... ..+..+.+..+ +..+.. .+..+|+.++.+|.+
T Consensus 214 g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 214 SNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLT------ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSC------HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred CCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhccc------chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence 9999999999999864 455444433333322111 00001111111 222222 234567777888999
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHH
Q 003273 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 372 (834)
.|++++|.++|+++.+. .++..+|+.++.+|.+.|++++|+++|++|.+.+. .+..++..++.++...|+.++|..+
T Consensus 285 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998875 46888999999999999999999999999887442 1344444555555444544444444
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+..+.+. .+.+.. +|+.++..|.+.|++++|+++|+++.+
T Consensus 362 ~~~~~~~-------~~~~~~---------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 362 SNDLVDR-------HPEKAV---------------------------------TWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHH-------CTTSHH---------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-------CcccHH---------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444431 233334 444444444444444444444444433
Q ss_pred cCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChh
Q 003273 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVV 529 (834)
Q Consensus 453 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~ 529 (834)
..| .+...++.++.+|.+.|++++|.++|+++. ..+..
T Consensus 402 ----~~~-----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 402 ----MDP-----------------------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp ----HCT-----------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred ----hCC-----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 111 233344455555555555555555555443 23556
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISAR--AEHYA 603 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~ 603 (834)
+|+.++.+|.+.|++++|+++|++|.+. .| +..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+|.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 6777777777777777777777777763 33 46667777777777777777777777765432 55666 67788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 604 CIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
.++.+|.+.|++++|.+.++++ .. +.+..+|..+..+|...|+.++|.+.++++++++|+++.++..|+++|..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8888888888888888888776 22 24678999999999999999999999999999999999999999988753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-40 Score=379.43 Aligned_cols=483 Identities=10% Similarity=-0.004 Sum_probs=387.1
Q ss_pred HHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhh
Q 003273 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259 (834)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~ 259 (834)
+.++|.+..+...++.++.. ++..|+.++..|.+.|++++|+.+|++|. +..|+..++..+..+|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~-------- 128 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLS---REDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYC-------- 128 (597)
T ss_dssp -------------------C---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHH--------
T ss_pred ccccCccCCCCCccccchHH---HHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHH--------
Confidence 45567777777777777666 77888888888888888888888888887 34567777777777777
Q ss_pred hhcCcHHHHHHHHHhc--CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc---------------CCCCCeeeHHHHH
Q 003273 260 KQCGMMEEAKKVFERM--KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE---------------NVKLNVVTWSAVI 322 (834)
Q Consensus 260 ~~~g~~~~A~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~~~~~li 322 (834)
+.|++++|..+|+.+ ..++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++
T Consensus 129 -~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 129 -CTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp -HTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred -HcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 677788888888877 4678889999999999999999999999853322 2334678999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHhhhhhchhhhh--hHH-HHHHHHHhhhcCCCCCChhhHHHHHH
Q 003273 323 AGYAQRGHGHEALDVFRQMQFCGLEPNV-VTLVSLLSGCASVGALLLG--KET-HCYTIKRVLSVDGSHPDDLMVINALI 398 (834)
Q Consensus 323 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~~~~~li 398 (834)
.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+..+.. ..+ +..+... +......+++.++
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE------DAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG------GHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc------hHHHHHHHHHHHH
Confidence 99999999999999999999854 443 3344444333322222111 111 2222222 3334455677789
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
.+|.+.|++++|.++|+++....++..+|+.++.+|.+.|++++|+++|++|.+ .+ ..+..++..++.++...|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--ID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--cC-cccHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999985557999999999999999999999999999987 22 236678999999999999999
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
+|..++..+.+... .+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 357 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 357 KLYLISNDLVDRHP--EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHCT--TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999997653 678899999999999999999999999886 3568899999999999999999999999999
Q ss_pred HcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC
Q 003273 556 KEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-------PM 627 (834)
Q Consensus 556 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 627 (834)
+. .| +..+|..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +.
T Consensus 435 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 435 RL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred Hh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 84 45 6889999999999999999999999999853 3346889999999999999999999999987 34
Q ss_pred CCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 628 EPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 628 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+ ..+|..++.+|...|+.++|+..++++++++|+++.+|..++++|...|++++|.+.++++.+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 677 7799999999999999999999999999999999999999999999999999999999999875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.7e-27 Score=253.37 Aligned_cols=375 Identities=11% Similarity=0.109 Sum_probs=281.9
Q ss_pred HHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCch
Q 003273 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~ 257 (834)
..+.+.|++++|.+.|+++....|.+...+..+...+.+.|++++|...++...+.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------------------ 62 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------ 62 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------
Confidence 34445566666666665555444445555555555566666666665555544321
Q ss_pred hhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHH
Q 003273 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337 (834)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 337 (834)
...+...|..+...|.+.|++++|...|+++....+. +..+|..+..++.+.|++++|++.
T Consensus 63 ------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 63 ------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1234556677777777777777777777777665332 444567777777777777777777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhc
Q 003273 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 338 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 417 (834)
|+++.+. .|.+..++..+...|...|++++|.+.|+++
T Consensus 124 ~~~al~~------------------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 124 YVSALQY------------------------------------------NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHH------------------------------------------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHh------------------------------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7766542 2333445566777777788888888888777
Q ss_pred CCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccc
Q 003273 418 APKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496 (834)
Q Consensus 418 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 496 (834)
....| +..+|+.+...|.+.|++++|+..|+++++ ..| .+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p-----------------------------------~~ 202 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT----LDP-----------------------------------NF 202 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCT-----------------------------------TC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC-----------------------------------Cc
Confidence 65455 467788888888888888888888888876 344 34
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA 572 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 572 (834)
+..+..+...|...|++++|...|++.. .| +..+|..+...|...|++++|+..|+++.+ ..|+ ..++..+..+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Confidence 4556777888888899999998888775 33 577899999999999999999999999998 5675 7789999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 650 (834)
+...|++++|..+|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999863 4557888999999999999999999999987 3334 477899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
...++++++++|+++.+|..++.+|...|+
T Consensus 359 ~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999988764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=6.2e-25 Score=238.32 Aligned_cols=352 Identities=14% Similarity=0.085 Sum_probs=267.4
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhh
Q 003273 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367 (834)
Q Consensus 288 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 367 (834)
..+.+.|++++|.+.++++.+..+. +...+..+...+.+.|++++|...++...+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~------------------------ 61 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------------ 61 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------
Confidence 3455667777777777666655433 444555555666666777766666666554
Q ss_pred hhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHH
Q 003273 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALAL 446 (834)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l 446 (834)
..|.+..++..+...|.+.|++++|...|+++....|+ ..+|..+...|.+.|++++|++.
T Consensus 62 ------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 62 ------------------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ------------------cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23444555556666666666666666666655443443 33566666666666666666666
Q ss_pred HHhhcccCCCCcCCccc-HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-
Q 003273 447 FPQMFQQDKLVKPNAFT-LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK- 524 (834)
Q Consensus 447 ~~~m~~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~- 524 (834)
|+++.+ ..|+..+ +..+...+...|++++|...+..+.+... .+...++.+...|.+.|++++|...|+++.
T Consensus 124 ~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 124 YVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666655 4455443 33334445555666666666666665432 567788899999999999999999999987
Q ss_pred -CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChH
Q 003273 525 -QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAE 600 (834)
Q Consensus 525 -~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 600 (834)
.| +...|..+...+...|++++|+..|++..+ ..|+ ..++..+..++...|++++|...|+.+.+ +.| +..
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 272 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPD 272 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHH
Confidence 33 567899999999999999999999999998 5676 78899999999999999999999999975 344 477
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.|..++.+|.+.|++++|.+.++++. .+++..+|..+...+...|+.++|...+++++++.|++..++..++.+|...
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 89999999999999999999999872 2356889999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHh
Q 003273 679 GRWKDVARIRSLMKH 693 (834)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (834)
|++++|.+.++++.+
T Consensus 353 g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 353 GKLQEALMHYKEAIR 367 (388)
T ss_dssp TCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999876
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.9e-27 Score=259.88 Aligned_cols=209 Identities=12% Similarity=0.108 Sum_probs=159.8
Q ss_pred HHHHHHHHHHcCCCCCcc-cHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---------hhH
Q 003273 119 AFRLFLQMMRRGWHPDEY-TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT---------LSY 188 (834)
Q Consensus 119 a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~---------~~~ 188 (834)
+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334445555555444332 3666667777777777777777777777777777777777777765544 677
Q ss_pred HHHHHHhcCCCCC-CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHH
Q 003273 189 ARQLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267 (834)
Q Consensus 189 A~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~ 267 (834)
|.++|++|...|+ ||.++||+||.+|++.|++++|+++|++|.+. |+.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~------------------------------ 137 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQ------------------------------ 137 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCC------------------------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------------------------------
Confidence 8888888888875 68888888888888888888888888888876 554
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003273 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347 (834)
Q Consensus 268 A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 347 (834)
||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..
T Consensus 138 ----------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 138 ----------PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred ----------CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC
Confidence 5667778888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHhhhhhchhhh
Q 003273 348 PNVVTLVSLLSGCASVGALLL 368 (834)
Q Consensus 348 pd~~t~~~ll~a~~~~~~~~~ 368 (834)
|+..||+.++..|+..+....
T Consensus 208 ps~~T~~~l~~~F~s~~a~~~ 228 (501)
T 4g26_A 208 VSKSTFDMIEEWFKSEVATKT 228 (501)
T ss_dssp BCHHHHHHHHHHHHSHHHHTC
T ss_pred cCHHHHHHHHHHHhcCcchhh
Confidence 999999999999887654433
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2e-26 Score=254.21 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=181.1
Q ss_pred HHHHHHHhcCCCCCC--CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcH
Q 003273 188 YARQLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265 (834)
Q Consensus 188 ~A~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~ 265 (834)
.+..++.++.+++.. ....++.+|.+|++.|++++|+++|++|.+. |++||.+||+++|.+|+..+....+.+.+.+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445555666666542 2345788889999999999999999999888 9999999999999999887776666677889
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 003273 266 EEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341 (834)
Q Consensus 266 ~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 341 (834)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999986 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhC
Q 003273 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404 (834)
Q Consensus 342 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 404 (834)
.+.|+.||..||+++|.+|++.|++++|.+++..+... +..|+..+++.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~------g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL------VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh------CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 9999999999999998763
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.7e-22 Score=223.70 Aligned_cols=326 Identities=14% Similarity=0.107 Sum_probs=263.7
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 278 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+...|..+...|.+.|++++|..+|+++.+..+. +..+|..+...|.+.|++++|+..|+++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 89 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 36778899999999999999999999999887544 7788899999999999999999999998763
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc----cchHHHHHH
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV----ATWTVMIGS 433 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~ 433 (834)
.+.+..++..++.+|.+.|++++|...|+++....|+. ..|..++..
T Consensus 90 -----------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 90 -----------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 23345667778888888888888888888887655543 555555443
Q ss_pred ------------HHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHh
Q 003273 434 ------------YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501 (834)
Q Consensus 434 ------------~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 501 (834)
|.+.|++++|+..|+++.+ ..| .++.++.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~ 181 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILE----VCV-----------------------------------WDAELRE 181 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC-----------------------------------CChHHHH
Confidence 5666666666666666654 222 5667778
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHH--------
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VTFLVL-------- 569 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l-------- 569 (834)
.+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+. ..+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 89999999999999999999886 45788999999999999999999999999998 56764 334443
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003273 570 ----LYACSHSGMVDQGLKYFDSMSKEFGISAR-----AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALL 638 (834)
Q Consensus 570 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 638 (834)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|++.++++ ...| +...|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999853 344 558999999999999999999999987 3334 688999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHhcC-----CchhHHHHHHH
Q 003273 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLS------------NIYANAG-----RWKDVARIRSL 690 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 690 (834)
.+|...|++++|...++++++++|+++.++..++ +.|...| +.+++++.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 5566667 34455555554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.5e-22 Score=223.70 Aligned_cols=433 Identities=10% Similarity=0.003 Sum_probs=291.4
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHH
Q 003273 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW 283 (834)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~ 283 (834)
+..|......+.+.|++++|+..|+++... .||...|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------------------------~p~~~~~ 42 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-------------------------------------------KEDPVFY 42 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-------------------------------------------CCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-------------------------------------------CccHHHH
Confidence 445777788888899999999998888754 2455666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 363 (834)
..+..+|.+.|++++|...|+++.+.++. +..+|..+..+|.+.|++++|+..|+++...+. ++......++..+...
T Consensus 43 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 120 (514)
T 2gw1_A 43 SNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNK 120 (514)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH
Confidence 77777777778888888888777776544 556777777788888888888888887777653 3333333333333332
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHH---HHHHHHhCCChHHHHHHHHhcCCC-------CC-CccchHHHHH
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINA---LIDMYAKCKSVDVARVMFDAIAPK-------NR-DVATWTVMIG 432 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~~~~-------~~-~~~~~~~li~ 432 (834)
.......+.+..+... +..++...... .............+...+...... .| +...|.....
T Consensus 121 ~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 121 QAMSKLKEKFGDIDTA------TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHTTC---------------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 2222222211111000 00000000000 000000000011111111111100 01 1233333333
Q ss_pred HHHh---cCChhHHHHHHHhhcc-----c--CCCC----cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchh
Q 003273 433 SYSQ---NGGANDALALFPQMFQ-----Q--DKLV----KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498 (834)
Q Consensus 433 ~~~~---~g~~~~A~~l~~~m~~-----~--~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 498 (834)
.+.. .|++++|+..|+++.+ . .... ..+..++..+...+...|+++.|...+..+.+... . ..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~-~~ 271 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--R-VN 271 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--C-HH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--c-HH
Confidence 3333 6777777777777654 1 0000 11233455556666677777777777777776553 3 77
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS 574 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 574 (834)
.+..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ..++..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHH
Confidence 78888999999999999999999876 34677899999999999999999999999998 4564 678888999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM----PMEPT----PIIWVALLNGCRI--- 643 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~--- 643 (834)
..|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..++ ...|..+...+..
T Consensus 350 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998753 2335678889999999999999999999876 22222 4488899999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+.+.|...++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=221.11 Aligned_cols=447 Identities=10% Similarity=-0.023 Sum_probs=283.8
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCC
Q 003273 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 219 (834)
.....+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+.++.+..+|..+..+|.+.|+
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 33444555566666666666666553 4666666777777777777777777776665555566677777777777777
Q ss_pred hhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHH
Q 003273 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299 (834)
Q Consensus 220 ~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 299 (834)
+++|+..|+++... + .++.......+..+.. ...... +
T Consensus 89 ~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~---------~~~~~~-------------------------------~ 126 (514)
T 2gw1_A 89 FADAMFDLSVLSLN-G-DFNDASIEPMLERNLN---------KQAMSK-------------------------------L 126 (514)
T ss_dssp HHHHHHHHHHHHHS-S-SCCGGGTHHHHHHHHH---------HHHHHH-------------------------------H
T ss_pred HHHHHHHHHHHHhc-C-CCccchHHHHHHHHHH---------HHHHHH-------------------------------H
Confidence 77777777777654 2 1222222222222210 000000 1
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------CC-HhHHHHHHHhhh---hhchhh
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE--------PN-VVTLVSLLSGCA---SVGALL 367 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd-~~t~~~ll~a~~---~~~~~~ 367 (834)
.+.+..+...+..|+...++.................+...+...... |+ ...+......+. ..|+++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
T 2gw1_A 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206 (514)
T ss_dssp TTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred HHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence 111110000000001110000000000000111111111111110000 22 222222222222 367788
Q ss_pred hhhHHHHHHHHHh---hhcCCC----CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCCh
Q 003273 368 LGKETHCYTIKRV---LSVDGS----HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440 (834)
Q Consensus 368 ~a~~~~~~~~~~~---~~~~~~----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 440 (834)
.|...+..+++.. ....+. .+.+..++..+...|.+.|++++|...|+++....|+...|..+...|...|++
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCH
Confidence 8888877777621 000001 134567788899999999999999999998875556677788889999999999
Q ss_pred hHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHH
Q 003273 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520 (834)
Q Consensus 441 ~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 520 (834)
++|+..|+++.. ..| .+..++..+...|.+.|++++|...|
T Consensus 287 ~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 287 TEYYNYFDKALK----LDS-----------------------------------NNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp TTGGGHHHHHHT----TCT-----------------------------------TCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHhh----cCc-----------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999876 334 34455677788888888888888888
Q ss_pred hhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 003273 521 DNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596 (834)
Q Consensus 521 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 596 (834)
+++. ..+...|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+++.+.+...-.
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 8775 345678888888999999999999999999884 454 6778888889999999999999999887543333
Q ss_pred CC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 597 AR----AEHYACIVDLLGR---ANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 597 p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
++ ...+..+...|.+ .|++++|.+.++++ ... .+..+|..+...+...|+.+.|...+++++++.|+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 33 4478889999999 99999999999887 222 357788899999999999999999999999999988777
Q ss_pred HHHH
Q 003273 668 YTLL 671 (834)
Q Consensus 668 ~~~l 671 (834)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.8e-21 Score=212.95 Aligned_cols=376 Identities=11% Similarity=0.040 Sum_probs=235.8
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHH
Q 003273 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270 (834)
Q Consensus 191 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~ 270 (834)
..|.+.....+.+...|..++..|.+.|++++|+.+|+++.+.
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------------------------- 55 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG------------------------------------- 55 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------------------
Confidence 3334444444446677777777777788888887777777542
Q ss_pred HHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 003273 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350 (834)
Q Consensus 271 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 350 (834)
...+..+|..+...|.+.|++++|...|+++.+.++. +..+|..+...|.+.|++++|++.|+++.+.. |+.
T Consensus 56 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 127 (450)
T 2y4t_A 56 -----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSE 127 (450)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCH
T ss_pred -----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 1234566777777777888888888888887776544 56677778888888888888888888887643 433
Q ss_pred ----hHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-Ccc
Q 003273 351 ----VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVA 425 (834)
Q Consensus 351 ----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~ 425 (834)
..+..+...+.. ..+..+...|.+.|++++|...|+++....| +..
T Consensus 128 ~~~~~~~~~l~~~~~~-----------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEM-----------------------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 233333222111 1233455678889999999999999875555 677
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH
Q 003273 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505 (834)
Q Consensus 426 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 505 (834)
.|..++..|.+.|++++|++.|+++.+ ..| .++.++..+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~l~~ 219 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASK----LKN-----------------------------------DNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHH----HHC-----------------------------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-----------------------------------CCHHHHHHHHH
Confidence 899999999999999999999999986 333 23344455555
Q ss_pred HHHhcCCHHHHHHHHhhcC--CC-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----hhH
Q 003273 506 MYSRSGDIDTARVVFDNLK--QR-NVVSWTSL------------MTGYGMHGLGDKAHWAFDQMRKEGLAPD-----GVT 565 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t 565 (834)
.|.+.|++++|...|+++. .| +...|..+ ...+...|++++|+..|+++.+ +.|+ ...
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~ 297 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRS 297 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHH
Confidence 5555555555555555544 22 22333333 5666677777777777777766 3454 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH---
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNG--- 640 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~--- 640 (834)
+..+..++.+.|++++|..+++.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...|+ ...|..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 566666677777777777777766532 1224566777777777777777777777665 33343 4445444422
Q ss_pred ---------HHhcC-----cHHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCchh
Q 003273 641 ---------CRIHA-----NVELGELAANR-LLELESEKDG----------SYTLLSNIYANAGRWKD 683 (834)
Q Consensus 641 ---------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 683 (834)
|...| +.+++.+.+++ +++.+|++.. .+..+..+|...|+.+.
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22333 55677888886 7788887432 34445555555555443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=6.3e-21 Score=216.40 Aligned_cols=423 Identities=12% Similarity=0.061 Sum_probs=255.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
...+..+...|.+.|++++|...|+++....+.+..+|..+..+|.+.|++++|++.|+++.+. .
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------------ 89 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI---K------------ 89 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C------------
Confidence 3456677777888888888888888877666667778888888888888888888888877643 1
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcC
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 329 (834)
..+...+..+...|...|++++|...|+.+ .. +....+..+..+...+
T Consensus 90 ---------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~~~~~~~~~ 137 (537)
T 3fp2_A 90 ---------------------------PDHSKALLRRASANESLGNFTDAMFDLSVL-SL----NGDFDGASIEPMLERN 137 (537)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHH
T ss_pred ---------------------------CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc----CCCCChHHHHHHHHHH
Confidence 234556677777788888888888888533 22 2222233344555556
Q ss_pred ChhHHHHHHHHHHHC------CCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHh
Q 003273 330 HGHEALDVFRQMQFC------GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403 (834)
Q Consensus 330 ~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 403 (834)
...+|+..++++... ...|+...+...+..+. ...+. ..........+........+...|..
T Consensus 138 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 138 LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD----SHLEV-------SSVNTSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC----HHHHH-------HTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC----hHHHH-------HHHhhccccccHHHHHHHHHHHHHHh
Confidence 667777777777542 22233333333222111 10000 00000000111112233333333322
Q ss_pred C--------CChHHHHHHHHhcCCCCCCc--------cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHH
Q 003273 404 C--------KSVDVARVMFDAIAPKNRDV--------ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467 (834)
Q Consensus 404 ~--------g~~~~A~~~f~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l 467 (834)
. |++++|..+|+++....|+. .+|..+...+...|++++|+..|+
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~------------------- 267 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ------------------- 267 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH-------------------
Confidence 2 24444555555444333321 123333344444444444444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 003273 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG 544 (834)
Q Consensus 468 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 544 (834)
.+.+.. ++...+..+...|.+.|++++|...|+++. ..+..+|..+...+...|++
T Consensus 268 ------------------~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 268 ------------------ESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp ------------------HHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------HHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 444432 224555666777777777777777777665 33566777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003273 545 DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (834)
++|+..|+++.+ ..|+ ..++..+..++...|++++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++
T Consensus 327 ~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 327 KNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888777 3454 566777777788888888888888877653 23345677777888888888888888777
Q ss_pred hC----CCCC----CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 624 GM----PMEP----TPIIWVALLNGCRIH----------ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 624 ~~----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
++ +..+ ....+..+...+... |+++.|...++++++..|+++.++..++.+|...|++++|.
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 65 1111 122344444556666 88888888888888888888888888889999899999988
Q ss_pred HHHHHHHhc
Q 003273 686 RIRSLMKHT 694 (834)
Q Consensus 686 ~~~~~m~~~ 694 (834)
+.++.+.+.
T Consensus 483 ~~~~~al~~ 491 (537)
T 3fp2_A 483 ELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888764
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.1e-20 Score=212.04 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 393 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
++..+...|...|++++|...|+++....|+...|..+...|...|++++|+..|+++.+ ..|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~------------- 307 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVD----LNP------------- 307 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH----HCT-------------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc----cCC-------------
Confidence 567778889999999999999999987678888899999999999999999999999876 334
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 549 (834)
.++.++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+.
T Consensus 308 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 308 ----------------------EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445566778888888899999998888776 3456788889999999999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhc----------CC
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA----RAEHYACIVDLLGRA----------NR 614 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~----------g~ 614 (834)
.|+++.+. .|+ ...+..+...+...|++++|...|+.+.+...-.+ ....+..+..+|.+. |+
T Consensus 366 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 99999884 565 67788888899999999999999998765321111 123345556777787 99
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 615 LDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 615 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
+++|.+.++++ ... .+...|..+...+...|+.+.|...+++++++.|++.....
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999887 223 45778999999999999999999999999999998765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.4e-18 Score=185.49 Aligned_cols=316 Identities=13% Similarity=0.062 Sum_probs=224.6
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 279 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
|+..+..+...+.+.|++++|...|+++.+..+. +..+|..+...+...|++++|+..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------
Confidence 3456777778888888888888888888776554 5667777888888888888888888877653
Q ss_pred hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC---C-ccchHHH----
Q 003273 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR---D-VATWTVM---- 430 (834)
Q Consensus 359 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~-~~~~~~l---- 430 (834)
.|.+..++..+...|.+.|++++|...|+++....| + ...|..+
T Consensus 67 ----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (359)
T 3ieg_A 67 ----------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118 (359)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence 222334555666666666777777777666654444 2 2223322
Q ss_pred --------HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 431 --------IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 431 --------i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
...+...|++++|++.|+++.+ ..| .++.++..
T Consensus 119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~ 159 (359)
T 3ieg_A 119 EMQRLRSQALDAFDGADYTAAITFLDKILE----VCV-----------------------------------WDAELREL 159 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC-----------------------------------CchHHHHH
Confidence 3556666666666666666654 223 45566677
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHH-----------
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFL----------- 567 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~----------- 567 (834)
+...|.+.|++++|...|+++. ..+...|..+...|...|++++|...|++..+ ..|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHH
Confidence 8888888888888888888776 34667888888888899999999999999888 4565 33322
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003273 568 -VLLYACSHSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCR 642 (834)
Q Consensus 568 -~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 642 (834)
.+...+...|++++|...++.+.+...-.+.. ..+..+..+|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 22556888899999999998887542211111 33556778888899999999888877 2233 5778888888888
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..|+.++|...++++++++|+++.++..|..++...
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 899999999999999999998888887777776543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=9e-18 Score=179.21 Aligned_cols=306 Identities=12% Similarity=0.038 Sum_probs=239.6
Q ss_pred eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHH
Q 003273 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394 (834)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (834)
+..|..+...+...|++++|+..|+++.+ ..|.+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------------------------------~~p~~~~~~ 40 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVD------------------------------------------GDPDNYIAY 40 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------HCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------------------------hCcccHHHH
Confidence 34566677777778888888888877765 234455677
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC---CcccHHHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP---NAFTLSCALMA 470 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p---~~~t~~~ll~a 470 (834)
..+...|...|++++|...|+++....| +...|..+...|...|++++|+..|+++.+ ..| +.......+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l-- 114 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQL-- 114 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHH--
Confidence 7788888889999999999988775555 567788888999999999999999999977 455 222111111
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHH
Q 003273 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKA 547 (834)
Q Consensus 471 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 547 (834)
+.. ........+...|...|++++|...|+++. ..+...|..+...+...|++++|
T Consensus 115 ----~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 115 ----VKA-----------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp ----HHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHH-----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 111 011122345678899999999999999886 45677899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHH------------HHHHHHhhcC
Q 003273 548 HWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYA------------CIVDLLGRAN 613 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~------------~l~~~~~~~g 613 (834)
+..++++.+ ..|+ ..++..+...+...|++++|...|+...+. .|+ ...+. .+...+.+.|
T Consensus 174 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998 4564 788999999999999999999999998753 333 22222 3377799999
Q ss_pred CHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 614 RLDEAVELIEGM-PMEPT-P----IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 614 ~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
++++|.+.++++ ...|+ . ..|..+...+...|+.+.|...++++++.+|+++.++..++.+|...|++++|.+.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999887 22333 3 23555777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 003273 688 RSLMKHT 694 (834)
Q Consensus 688 ~~~m~~~ 694 (834)
++.+.+.
T Consensus 329 ~~~a~~~ 335 (359)
T 3ieg_A 329 YEAAQEH 335 (359)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9998764
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.6e-14 Score=165.03 Aligned_cols=295 Identities=12% Similarity=0.098 Sum_probs=185.0
Q ss_pred hHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHH
Q 003273 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430 (834)
Q Consensus 351 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 430 (834)
.-......++...|...++.++++.++.. ...+..+....+.|+.+..+. +..+..+...+.. . .....+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~----~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--~---~d~~eI 1055 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLD----NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--N---YDAPDI 1055 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcC----CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--h---ccHHHH
Confidence 34466778888899999999999988843 112334556667777666666 3444555444443 1 113446
Q ss_pred HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHH-hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh
Q 003273 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC-ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509 (834)
Q Consensus 431 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 509 (834)
...+...|.+++|..+|++... +...+..+ ...++++.|.++...+ .++.+|..+..++.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----------~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----------NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHh
Confidence 6677777888888888877532 11111222 2556677777766543 456677777777777
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--------------------------CCCh
Q 003273 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL--------------------------APDG 563 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------------------~p~~ 563 (834)
.|++++|.+.|.+. .|...|..++..+.+.|++++|++.+...++..- .|+.
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ 1195 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN 1195 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH
Confidence 77777777777664 5666677777777777777777777766554221 1233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 643 (834)
..|..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++.. +..+|.....+|..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhh
Confidence 33444555555555555555555543 246666666666666666666666553 45666666666666
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
.|++..|...... +.. ++..+..++..|.+.|.|++|..+++...
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred hhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666665443 222 34567788889999999999999986654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.6e-17 Score=175.12 Aligned_cols=182 Identities=13% Similarity=0.076 Sum_probs=125.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYAC 573 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 573 (834)
..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ...+..+...+
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Confidence 334455555555555555555555544 22345566666667777777777777777766 4454 56667777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 003273 574 SHSGMVDQGLKYFDSMSKEFG-------ISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIH 644 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~ 644 (834)
...|++++|..+++.+.+... .+.....+..+..+|.+.|++++|.+.+++. .. +.+...|..+...+...
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh
Confidence 777777777777776654321 1333567778888888888888888888776 11 23567888888889999
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIY-ANAGRW 681 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 681 (834)
|+.++|...+++++++.|+++.++..++.+| ...|+.
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999888 455554
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.2e-14 Score=163.73 Aligned_cols=417 Identities=12% Similarity=0.112 Sum_probs=314.4
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHH
Q 003273 138 FPFVLKACGELPSSRCGSSVHAVICSSG--FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215 (834)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~ 215 (834)
-....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +........++.... + ...+...+.
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---d---~~eIA~Iai 1060 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---D---APDIANIAI 1060 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---c---HHHHHHHHH
Confidence 4567888889999999999999998432 234567788888888777 556666666665533 3 455788899
Q ss_pred hCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCC
Q 003273 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295 (834)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~ 295 (834)
..|.+++|..+|++.... ......++. ..+++++|.++.++. .+..+|..+..++.+.|+
T Consensus 1061 ~lglyEEAf~IYkKa~~~------~~A~~VLie------------~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVN------TSAVQVLIE------------HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred hCCCHHHHHHHHHHcCCH------HHHHHHHHH------------HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC
Confidence 999999999999986311 111222222 457899999998876 457889999999999999
Q ss_pred HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHH
Q 003273 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375 (834)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 375 (834)
+++|.+.|.+. . |...|..++..+.+.|++++|++.|....+.. ++....+.+..+|++.++++....+
T Consensus 1121 ~kEAIdsYiKA--d----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc--C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 99999999775 2 88899999999999999999999999877754 3433344588888988877743333
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCC
Q 003273 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455 (834)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 455 (834)
++ .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++..
T Consensus 1190 -I~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1190 -IN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred -Hh---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 22 234455667999999999999999999986 389999999999999999999999874
Q ss_pred CCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHH
Q 003273 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWT 532 (834)
Q Consensus 456 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~ 532 (834)
+..+|..+-.+|...+.+..|....-.+. .++..+..++..|.+.|.+++|..+++.... .....|+
T Consensus 1249 ----n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1249 ----STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred ----CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 34778888899999999999888765432 5667778999999999999999999998863 3455777
Q ss_pred HHHHHHHHc--CChHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHh----------HHhcC
Q 003273 533 SLMTGYGMH--GLGDKAHWAFDQMRKEGLAP------DGVTFLVLLYACSHSGMVDQGLKYFDSM----------SKEFG 594 (834)
Q Consensus 533 ~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~~~~m----------~~~~~ 594 (834)
-+...|++. ++..+++++|..-.. +.| +...|.-+...|.+.|+++.|....-.- .....
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 777777765 456677777775433 444 3566888888999999999988322111 00112
Q ss_pred CCCChHHHHHHHHHHhhcC---------------CHHHHHHHHHhC
Q 003273 595 ISARAEHYACIVDLLGRAN---------------RLDEAVELIEGM 625 (834)
Q Consensus 595 ~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~ 625 (834)
-..+++.|...++.|...+ +.+.+.+++.+.
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 3456777877777777666 777777777755
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.7e-15 Score=169.32 Aligned_cols=425 Identities=11% Similarity=0.067 Sum_probs=242.1
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC
Q 003273 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238 (834)
Q Consensus 159 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 238 (834)
+..++.. +.+...|..++. +.+.|+++.|+.+|+++.+..|.+...|..++..+.+.|++++|..+|++.... .|
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p 77 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VL 77 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Confidence 3344433 456777888887 477888888888888888776667778888888888888888888888888743 35
Q ss_pred CccchHhHHHHhhccCCchhhhhcCcHHHHH----HHHHhcC------CCChhHHHHHHHHHHc---------CCCHHHH
Q 003273 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAK----KVFERMK------VKDVVSWNAMVTGYSR---------IGSFEDA 299 (834)
Q Consensus 239 ~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~----~~~~~~~------~~d~~~~~~li~~~~~---------~g~~~~A 299 (834)
+...|...+..... ..|+.+.|+ ++|+... ..+...|...+....+ .|+++.|
T Consensus 78 ~~~lw~~~~~~~~~--------~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 78 HIDLWKCYLSYVRE--------TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp CHHHHHHHHHHHHH--------HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHH--------HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 54444444332211 112222222 2343321 1245566666665543 5666666
Q ss_pred HHHHHHhHhcCCCCCe---eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHH
Q 003273 300 FALFKKMRQENVKLNV---VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 376 (834)
..+|++.... |+. ..|..........| ..+...++. ...+.+..|..++...
T Consensus 150 ~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~ 204 (530)
T 2ooe_A 150 RRVYQRGCVN---PMINIEQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEY 204 (530)
T ss_dssp HHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 6666666652 211 11211111000000 000011110 0123344444444332
Q ss_pred HHHhhhcCC---CCCCh--------hhHHHHHHHHHHhC----CCh----HHHHHHHHhcCCCCC-CccchHHHHHHHHh
Q 003273 377 IKRVLSVDG---SHPDD--------LMVINALIDMYAKC----KSV----DVARVMFDAIAPKNR-DVATWTVMIGSYSQ 436 (834)
Q Consensus 377 ~~~~~~~~~---~~~~~--------~~~~~~li~~y~~~----g~~----~~A~~~f~~~~~~~~-~~~~~~~li~~~~~ 436 (834)
......... ..+|+ ...|...+..-... ++. +.|..+|++.....| +...|...+..+.+
T Consensus 205 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 284 (530)
T ss_dssp HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 211100000 01222 12333333222211 111 234444444432223 34445444444443
Q ss_pred -------cCChh-------HHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 437 -------NGGAN-------DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 437 -------~g~~~-------~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
.|+.+ +|..+|++.++ .+.| .+..++..
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~---~~~p-----------------------------------~~~~l~~~ 326 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAIS---TLLK-----------------------------------KNMLLYFA 326 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---TTCS-----------------------------------SCHHHHHH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHH---HhCc-----------------------------------ccHHHHHH
Confidence 34444 44444444432 0122 55667778
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CCC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH-HHhc
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK--QRN-V-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA-CSHS 576 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~--~~~-~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~ 576 (834)
++..+.+.|++++|..+|+++. .|+ . ..|..++..+.+.|+.++|..+|++..+. .|+ ...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 8888888888888888888776 343 2 47888888888888899999999988873 444 3333332222 3357
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCcHHHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM----PMEPT--PIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a 650 (834)
|++++|..+|+...+.. +.+...|..+++++.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88999999998887542 234677888888888888888888888876 22232 44788888888888888888
Q ss_pred HHHHHHHHhcCCC
Q 003273 651 ELAANRLLELESE 663 (834)
Q Consensus 651 ~~~~~~~~~~~p~ 663 (834)
..+.+++.+..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 8888888888774
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=8.2e-17 Score=169.60 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=181.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcC
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG-DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHG 542 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 542 (834)
+...+...|+++.|..++..+.+... .++..+..+...|...| ++++|...|+++. ..+...|..+...+...|
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 33333444444444444444444322 56677788889999999 9999999999876 345778999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 543 LGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 543 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
++++|+..|+++.+. .|+ ...+..+...+...|++++|..+++.+.+ ..+.+...+..+...|.+.|++++|.+.
T Consensus 140 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 140 EHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp CHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999984 554 67778889999999999999999999874 2334578899999999999999999999
Q ss_pred HHhCC-C----------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 003273 622 IEGMP-M----------EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690 (834)
Q Consensus 622 ~~~~~-~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 690 (834)
++++. . ..+..+|..+...+...|+.+.|...+++++++.|+++.++..++.+|...|++++|.+.+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 98761 0 234678999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh
Q 003273 691 MKH 693 (834)
Q Consensus 691 m~~ 693 (834)
+.+
T Consensus 296 al~ 298 (330)
T 3hym_B 296 ALG 298 (330)
T ss_dssp TTT
T ss_pred HHc
Confidence 754
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1e-14 Score=164.60 Aligned_cols=399 Identities=10% Similarity=0.070 Sum_probs=288.9
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 278 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.|...|..++. +.+.|++++|..+|+++.+..+. +...|...+..+.+.|++++|..+|++.+... |+...+...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 47788999998 57889999999999999987554 67789999999999999999999999998754 6666555555
Q ss_pred Hhh-hhhchhhhhhH----HHHHHHHHhhhcCCCCCChhhHHHHHHHHHHh---------CCChHHHHHHHHhcCCCCCC
Q 003273 358 SGC-ASVGALLLGKE----THCYTIKRVLSVDGSHPDDLMVINALIDMYAK---------CKSVDVARVMFDAIAPKNRD 423 (834)
Q Consensus 358 ~a~-~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~~~~~ 423 (834)
... ...|+.+.+++ ++..++.. -+..+++..+|...+....+ .|+++.|+.+|++... .|+
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~ 161 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDK----IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM 161 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHH----TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh
Confidence 422 34566776665 55555443 12234567788888887765 6889999999999886 343
Q ss_pred c---cchHHHHHH---H----------HhcCChhHHHHHHHh------hcccCCC---CcCCc--------ccHHHHHHH
Q 003273 424 V---ATWTVMIGS---Y----------SQNGGANDALALFPQ------MFQQDKL---VKPNA--------FTLSCALMA 470 (834)
Q Consensus 424 ~---~~~~~li~~---~----------~~~g~~~~A~~l~~~------m~~~~~g---~~p~~--------~t~~~ll~a 470 (834)
. ..|...... + .+.+++.+|..++.+ ..+ .. +.|+. ..+...+.-
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~--~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD--RNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCC--SSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--cccccCCCCCChhHHHHHHHHHHHHHH
Confidence 2 233322211 0 124567777777765 332 21 23331 122222211
Q ss_pred Hhh----hhh----HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh-------cCCHH-------HHHHHHhhcCC---
Q 003273 471 CAR----LAA----LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR-------SGDID-------TARVVFDNLKQ--- 525 (834)
Q Consensus 471 ~~~----~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~~~~~~~--- 525 (834)
... .++ .+.+..++..+++... .++.++..++..+.+ .|+++ +|..+|++..+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 111 011 1355667777777543 678888888888876 69987 99999998863
Q ss_pred C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003273 526 R-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG--VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEH 601 (834)
Q Consensus 526 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 601 (834)
| +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|+...+. .|. ...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~ 392 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHV 392 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHH
Confidence 4 577899999999999999999999999999 67763 47888888888999999999999998743 333 333
Q ss_pred HHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----hHHHHHHH
Q 003273 602 YACIVDL-LGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG----SYTLLSNI 674 (834)
Q Consensus 602 ~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 674 (834)
|...+.+ +...|+.++|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3333322 34689999999999976 2224 5789999999999999999999999999998877665 67777888
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
....|+.+.+..+.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999988764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.4e-16 Score=170.93 Aligned_cols=253 Identities=14% Similarity=0.077 Sum_probs=140.6
Q ss_pred HHcCCCHHHHHH-HHHHhHhcCC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhch
Q 003273 290 YSRIGSFEDAFA-LFKKMRQENV---KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365 (834)
Q Consensus 290 ~~~~g~~~~A~~-l~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 365 (834)
+...|++++|.. .|++...... ..+...|..+...+.+.|++++|+..|+++.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------- 93 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------------------- 93 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---------------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------
Confidence 344577888887 7775544322 224667888888888888888888888888763
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHH
Q 003273 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDAL 444 (834)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 444 (834)
.|.+..++..+...|.+.|++++|...|+++....| +..+|..+...|...|++++|+
T Consensus 94 ---------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 94 ---------------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 233444555666666677777777777766554344 4566677777777777777777
Q ss_pred HHHHhhcccCCCCcCCcccHHH----------------HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHH
Q 003273 445 ALFPQMFQQDKLVKPNAFTLSC----------------ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508 (834)
Q Consensus 445 ~l~~~m~~~~~g~~p~~~t~~~----------------ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 508 (834)
+.|+++.. ..|+...... .+..+...|+++.|...+..+.+......++.++..+...|.
T Consensus 153 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 153 EILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHH----TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHH----hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 77777765 3343322111 122222555555555555555554432114455555555555
Q ss_pred hcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 003273 509 RSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
+.|++++|...|+++. ..+..+|..+...+...|++++|+..|+++.+ ..|+ ..++..+..++...|++++|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5566666655555544 22344555555555555555555555555555 2343 4455555555555555555555
Q ss_pred HHHHhH
Q 003273 585 YFDSMS 590 (834)
Q Consensus 585 ~~~~m~ 590 (834)
+|+.+.
T Consensus 307 ~~~~al 312 (368)
T 1fch_A 307 HFLEAL 312 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.8e-16 Score=164.59 Aligned_cols=283 Identities=11% Similarity=0.124 Sum_probs=105.1
Q ss_pred hhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHH
Q 003273 78 VSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157 (834)
Q Consensus 78 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (834)
-+.|++++|.+++++++++ .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...
T Consensus 14 ~~~~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3678899999999999655 4699999999999999999999965 35778999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 003273 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237 (834)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 237 (834)
++...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+.
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------ 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC------C----------------CTTTHHHHHHHTT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------
Confidence 9888874 46688899999999999999999988853 467799999999999999999999999772
Q ss_pred CCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee
Q 003273 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317 (834)
Q Consensus 238 p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 317 (834)
.|..+..++. +.|++++|.+.+.+. .++.+|..++.+|...|+++.|......+. + ++.-
T Consensus 150 ----n~~~LA~~L~---------~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~ 209 (449)
T 1b89_A 150 ----NFGRLASTLV---------HLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADE 209 (449)
T ss_dssp ----CHHHHHHHHH---------TTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHH
T ss_pred ----hHHHHHHHHH---------HhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhh
Confidence 4555555555 555666666666665 256666666666666666666644443322 1 2222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003273 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397 (834)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 397 (834)
...++..|.+.|++++|+.+++..+... +-....|+-|
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le------------------------------------------~ah~~~ftel 247 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE------------------------------------------RAHMGMFTEL 247 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST------------------------------------------TCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc------------------------------------------HHHHHHHHHH
Confidence 3345666666666666666666654321 2233444555
Q ss_pred HHHHHhC--CChHHHHHHHHhcCCCC------CCccchHHHHHHHHhcCChhHHHHH
Q 003273 398 IDMYAKC--KSVDVARVMFDAIAPKN------RDVATWTVMIGSYSQNGGANDALAL 446 (834)
Q Consensus 398 i~~y~~~--g~~~~A~~~f~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l 446 (834)
.-.|+|- +++.+..+.|..-.... .+...|..+...|.+.++++.|...
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5555543 34445555554333111 2466799999999999999988764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.4e-16 Score=169.04 Aligned_cols=281 Identities=12% Similarity=-0.043 Sum_probs=225.3
Q ss_pred HHhCCChHHHHH-HHHhcCCCCC-----CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCC-cccHHHHHHHHhh
Q 003273 401 YAKCKSVDVARV-MFDAIAPKNR-----DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN-AFTLSCALMACAR 473 (834)
Q Consensus 401 y~~~g~~~~A~~-~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~-~~t~~~ll~a~~~ 473 (834)
|.-.|++++|.. .|++.....| +...|..+...|.+.|++++|+..|+++++ ..|+ ...+..+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAE 110 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 445578899998 8886654433 356788899999999999999999999987 4454 4567777888899
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHH---------------HH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTS---------------LM 535 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li 535 (834)
.|+++.|...+..+.+... .++.++..+...|.+.|++++|...|+++. .| +...+.. .+
T Consensus 111 ~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLELKP--DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 9999999999999998764 578889999999999999999999999876 22 2223321 13
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKEGLAPD---GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 612 (834)
..+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .+.+...+..++.+|.+.
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANG 264 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHc
Confidence 3344889999999999999984 554 778899999999999999999999998753 233577899999999999
Q ss_pred CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcC
Q 003273 613 NRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEK-----------DGSYTLLSNIYANAG 679 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g 679 (834)
|++++|.+.++++ ... .+...|..+...+...|+.+.|...+++++++.|++ ..+|..++.+|...|
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999987 223 457789999999999999999999999999999987 789999999999999
Q ss_pred CchhHHHHHHHH
Q 003273 680 RWKDVARIRSLM 691 (834)
Q Consensus 680 ~~~~a~~~~~~m 691 (834)
++++|..+++..
T Consensus 345 ~~~~A~~~~~~~ 356 (368)
T 1fch_A 345 QSDAYGAADARD 356 (368)
T ss_dssp CGGGHHHHHTTC
T ss_pred ChHhHHHhHHHH
Confidence 999999987643
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.3e-16 Score=165.26 Aligned_cols=350 Identities=14% Similarity=0.066 Sum_probs=118.2
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++.+.|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455666666666666433 36666666666666666666666542 2555666666666666666666665554
Q ss_pred HHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC
Q 003273 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420 (834)
Q Consensus 341 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 420 (834)
.++. .+++ .+.+.|+.+|.++|+++++.++++
T Consensus 87 ark~--~~~~-----------------------------------------~i~~~Li~~Y~Klg~l~e~e~f~~----- 118 (449)
T 1b89_A 87 ARKK--ARES-----------------------------------------YVETELIFALAKTNRLAELEEFIN----- 118 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTT-----
T ss_pred HHHh--Cccc-----------------------------------------hhHHHHHHHHHHhCCHHHHHHHHc-----
Confidence 4432 2333 444455555555555555544442
Q ss_pred CCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHH
Q 003273 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500 (834)
Q Consensus 421 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (834)
.|+..+|+.++..|...|++++|..+|..+. .|..+..++.+.|+++.|.+.+..+ .++.+|
T Consensus 119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-----------n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~W 180 (449)
T 1b89_A 119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTW 180 (449)
T ss_dssp CC----------------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhH
Confidence 2344455555555555555555555555431 3444444444444444444444443 344555
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH--hcC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS--HSG 577 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g 577 (834)
..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++..+. ..+. ...|+.+.-+++ +.+
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHH
Confidence 666666666666666655554433 2323333466667777777777777776654 3333 333444433333 334
Q ss_pred CHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003273 578 MVDQGLKYFDSMSKEFGISA------RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
++.+.++.|. ++-+++| +..+|.-++-+|..-++++.|...+-+-+ |+..--........+-.+.|.--
T Consensus 258 k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyY 332 (449)
T 1b89_A 258 KMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYY 332 (449)
T ss_dssp HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHH
Confidence 4444444443 2224444 35567777778888888887777665543 22222222333333444444444
Q ss_pred HHHHHHHhcCCCC----------CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 652 LAANRLLELESEK----------DGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 652 ~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++..-.++..|.- ..-+...+..+.+.|.+.-++.++..+.
T Consensus 333 kai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 333 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4443333333320 0112233444455555555555554444
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.2e-15 Score=169.81 Aligned_cols=373 Identities=12% Similarity=0.044 Sum_probs=242.8
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-----C--CCC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQE-----N--VKL-NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 351 (834)
...||.|...|...|++++|++.|++..+. + ..| ..++|+.+...|...|++++|+..+++..+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i------- 123 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV------- 123 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------
Confidence 456888888888888888888888776432 0 111 3456777777788888888887777776541
Q ss_pred HHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHHHhC--CChHHHHHHHHhcCCCCCC-ccch
Q 003273 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG-SHPDDLMVINALIDMYAKC--KSVDVARVMFDAIAPKNRD-VATW 427 (834)
Q Consensus 352 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~~~~~-~~~~ 427 (834)
.....+ .......++..+..++.+. +++++|...|++.....|+ ...+
T Consensus 124 ----------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 124 ----------------------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp ----------------------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ----------------------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 000000 1122344555555555554 5699999999998766664 4455
Q ss_pred HHHHHH---HHhcCChhHHHHHHHhhcccCCCCcCCcc-cHHHHHHHHh----hhhhHHHHHHHHHHHHHhCCCccchhH
Q 003273 428 TVMIGS---YSQNGGANDALALFPQMFQQDKLVKPNAF-TLSCALMACA----RLAALRFGRQIHAYVLRNQYEMLIPFV 499 (834)
Q Consensus 428 ~~li~~---~~~~g~~~~A~~l~~~m~~~~~g~~p~~~-t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 499 (834)
..+... +...++.++|++.|++.++ +.|+.. .+..+...+. ..+..+.+.+.+....+... ..+.+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~--~~~~~ 249 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIR----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP--GVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHH----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS--SCHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhh----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc--cHHHH
Confidence 555444 3456888999999999987 566554 3333333333 34677889999988887654 67788
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHc
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMH-------------------GLGDKAHWAFDQMRKE 557 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~ 557 (834)
+..+...|.+.|++++|...|++.. .| +..+|..+...|... +..++|+..|++..+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE- 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh-
Confidence 8999999999999999999999887 34 556777776665432 336778888888887
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHH
Q 003273 558 GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDL-LGRANRLDEAVELIEGM-PMEPTPI 632 (834)
Q Consensus 558 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~ 632 (834)
..|+ ..++..+...+...|++++|..+|++..+. ...|.. ..+..+... +...|++++|++.+++. .+.|+..
T Consensus 329 -~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 -ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4565 677888999999999999999999988743 222221 123333333 45789999999999876 4556654
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEE
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 705 (834)
.+... .+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-.-....+|+
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 44332 34566778889999999999999999999999999999999999988764433344554
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1.8e-14 Score=160.88 Aligned_cols=369 Identities=9% Similarity=-0.032 Sum_probs=297.2
Q ss_pred CCChhHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCC
Q 003273 277 VKDVVSWNAMVTGYSR----IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ----RGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 277 ~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p 348 (834)
..+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577888888888888 899999999999988764 66788888888988 899999999999998865
Q ss_pred CHhHHHHHHHhhhh----hchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHh----CCChHHHHHHHHhcCCC
Q 003273 349 NVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK----CKSVDVARVMFDAIAPK 420 (834)
Q Consensus 349 d~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~ 420 (834)
+...+..+-..+.. .++.+.|...+..+... + +......|..+|.. .+++++|.+.|++..+.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44555556666666 67889999999888775 3 46678888889987 78999999999987643
Q ss_pred CCCccchHHHHHHHHh----cCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhh----hhhHHHHHHHHHHHHHhCC
Q 003273 421 NRDVATWTVMIGSYSQ----NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR----LAALRFGRQIHAYVLRNQY 492 (834)
Q Consensus 421 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~ 492 (834)
.+..++..+...|.. .+++++|++.|++..+ .+ +...+..+-..+.. .++.+.|...+....+.+
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT--SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 477888888888887 8999999999999987 43 33445555555554 678999999999888764
Q ss_pred CccchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCC
Q 003273 493 EMLIPFVANCLIDMYSR----SGDIDTARVVFDNLKQ-RNVVSWTSLMTGYGMH-----GLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 493 ~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~ 562 (834)
++..+..|..+|.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.| +
T Consensus 254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 44566778888888 8999999999998874 4667888888888887 89999999999999854 4
Q ss_pred hhHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 003273 563 GVTFLVLLYACSHSG---MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPMEPTPIIWV 635 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 635 (834)
...+..+...+...| ++++|.++|+...+. .+...+..+..+|.. .+++++|.+.+++.....++..+.
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~ 403 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 566777777777766 789999999988753 467788889999988 899999999999874345677888
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 003273 636 ALLNGCRI----HANVELGELAANRLLELESE---KDGSYTLLSNIYAN 677 (834)
Q Consensus 636 ~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 677 (834)
.|...+.. .+|.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88888887 89999999999999999954 66666667666553
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.9e-16 Score=169.73 Aligned_cols=229 Identities=13% Similarity=0.083 Sum_probs=127.6
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
+...|..+...+.+.|++++|+.+|+++.+ ..|.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------------------------------~~p~~~~~ 101 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL------------------------------------------QDPGDAEA 101 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH------------------------------------------HCTTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------hCcCCHHH
Confidence 455677777788888888888888877765 22344556
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH--------
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL-------- 464 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~-------- 464 (834)
+..+...|.+.|++++|...|+++....| +..+|..+...|...|++++|+..|+++.+ ..|+....
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK----QNPKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHCC--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCccchHHHhhhccch
Confidence 66777777777777777777777654444 466777778888888888888888888766 33432211
Q ss_pred ---HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 003273 465 ---SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGY 538 (834)
Q Consensus 465 ---~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 538 (834)
..+...+...|+++.|..++..+.+......++.++..+...|.+.|++++|...|+++. ..+..+|+.+...|
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 112333444444444444444444433211134444555555555555555555555443 22344455555555
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
...|++++|+..|+++++ ..|+ ..++..+..+|...|++++|...|+.+.
T Consensus 258 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555544 2333 4444444455555555555555555443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.2e-15 Score=167.53 Aligned_cols=394 Identities=13% Similarity=0.044 Sum_probs=213.1
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhcCC---------CCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC
Q 003273 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQ---------PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238 (834)
Q Consensus 168 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 238 (834)
....+||.|...|...|++++|++.|++..+ ..+...++|+.+...|...|++++|...|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i----- 123 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV----- 123 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----
Confidence 3456789999999999999999988876432 12225678999999999999999999998876532
Q ss_pred CccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHc--CCCHHHHHHHHHHhHhcCCC
Q 003273 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSR--IGSFEDAFALFKKMRQENVK 312 (834)
Q Consensus 239 ~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~ 312 (834)
..... .....+++.+..++.. .+++++|...|++..+..+.
T Consensus 124 ---------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 124 ---------------------------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp ---------------------------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred ---------------------------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 00011 1123445555444444 45789999999998877544
Q ss_pred CCeeeHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCC
Q 003273 313 LNVVTWSAVIAG---YAQRGHGHEALDVFRQMQFCGLEPNV-VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388 (834)
Q Consensus 313 p~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (834)
+...+..+... +...++.++|++.|++..+.. |+. ..+..+...+.
T Consensus 171 -~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~--------------------------- 220 (472)
T 4g1t_A 171 -NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLH--------------------------- 220 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHH---------------------------
T ss_pred -CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHH---------------------------
Confidence 45555555444 334577778888888776532 222 22222211111
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH-HH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL-SC 466 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~-~~ 466 (834)
..+...|++++|.+.|++.....| +...|..+...|...|++++|+..|++..+ ..|+.... ..
T Consensus 221 ----------~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~ 286 (472)
T 4g1t_A 221 ----------KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE----YIPNNAYLHCQ 286 (472)
T ss_dssp ----------HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHH
T ss_pred ----------HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH----hCCChHHHHHH
Confidence 112223455566666655443333 445566666677777777777777777665 45554322 11
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL 543 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 543 (834)
+...+...+.... .. ............+..++|...|+... ..+..+|..+...|...|+
T Consensus 287 lg~~y~~~~~~~~---------~~--------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NL--------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh---------hH--------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 1111111100000 00 00001111112233566777776654 3456678888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 003273 544 GDKAHWAFDQMRKEGLAPDG--VTFLVLLY-ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~~--~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 620 (834)
+++|+..|++.++....|.. ..+..+.. .....|+.++|+..|++.. .+.|+........ +.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHH
Confidence 99999999998884333321 12333332 3457789999999998876 3556543332222 22333
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 621 LIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 621 ~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
++++. . .+.++.+|..|...+...|+.++|++.+++++++.|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33332 1 1245778999999999999999999999999999999888776654
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=9.8e-14 Score=154.85 Aligned_cols=383 Identities=12% Similarity=0.028 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHh----CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHh----CCChhHHHHHHHHhhhCCCCCCCc
Q 003273 169 NVFVCNALMAMYAR----CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ----SGDAEGGLMLFARMTGDVKVQGDG 240 (834)
Q Consensus 169 ~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~ 240 (834)
++..+..|...|.. .++++.|...|++..+.+ +..++..|...|.. .+++++|+..|++..+. +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G----- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C-----
Confidence 55566666666666 677777777777665443 55667777777776 67777777777766543 1
Q ss_pred cchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCCee
Q 003273 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR----IGSFEDAFALFKKMRQENVKLNVV 316 (834)
Q Consensus 241 ~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ 316 (834)
+...+..|...|.. .+++++|...|++..+.| +..
T Consensus 110 --------------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 110 --------------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred --------------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 22233333444443 445555555555554443 334
Q ss_pred eHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh----hchhhhhhHHHHHHHHHhhhcCCCCC
Q 003273 317 TWSAVIAGYAQ----RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDGSHP 388 (834)
Q Consensus 317 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (834)
++..+...|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...+....+. +
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~-- 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS------G-- 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T--
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC------C--
Confidence 44444444444 445555555555554432 22223223222222 33333444444333332 1
Q ss_pred ChhhHHHHHHHHHHh----CCChHHHHHHHHhcCCCCCCccchHHHHHHHHh----cCChhHHHHHHHhhcccCCCCcCC
Q 003273 389 DDLMVINALIDMYAK----CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ----NGGANDALALFPQMFQQDKLVKPN 460 (834)
Q Consensus 389 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~ 460 (834)
+......|..+|.. .+++++|...|++.... .+...+..+...|.. .+++++|+..|++..+ .
T Consensus 218 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~--~----- 288 (490)
T 2xm6_A 218 -DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE--Q----- 288 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT--T-----
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--c-----
Confidence 23344555555554 56677777777765532 344455555555555 5666677776666654 2
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhc-----CCHHHHHHHHhhcC-CCChhHHHHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS-----GDIDTARVVFDNLK-QRNVVSWTSL 534 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~~~~~~-~~~~~~~~~l 534 (834)
.++..+..|..+|... ++.++|...|++.. ..+...+..+
T Consensus 289 ----------------------------------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 334 (490)
T 2xm6_A 289 ----------------------------------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANL 334 (490)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2233445566666665 77888888887766 3456677777
Q ss_pred HHHHHHcC---ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 535 MTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH----SGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 535 i~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...|...| +.++|+..|++..+. .+...+..+...|.. .+++++|..+|+...+. + +...+..|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHH
Confidence 77777655 678888888888875 356677777777777 78888888888887653 2 4667777888
Q ss_pred HHhh----cCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 608 LLGR----ANRLDEAVELIEGMP-MEP----TPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 608 ~~~~----~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+|.+ .+++++|.+.|++.. ..| +...+..|...+. .+.+.++..+++.++..|+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 8877 788888888888762 122 2333333333222 2445666667777666664
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.2e-15 Score=163.38 Aligned_cols=231 Identities=12% Similarity=0.004 Sum_probs=188.9
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 423 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
+...|..+...+.+.|++++|+..|+++++ ..| .+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p-----------------------------------~~~~~~~~ 104 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL----QDP-----------------------------------GDAEAWQF 104 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCc-----------------------------------CCHHHHHH
Confidence 455677778888888888888888888876 333 45666788
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hH----------HHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VT----------FLV 568 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t----------~~~ 568 (834)
+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+. .. +..
T Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHH
Confidence 8889999999999999999876 34678899999999999999999999999998 45542 22 234
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCc
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHAN 646 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~ 646 (834)
+...+...|++++|..+|+.+.+...-.++...+..+..+|.+.|++++|++.++++ .. +.+..+|..+...+...|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 577899999999999999999865332236889999999999999999999999987 22 3457899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+++|+..+++++++.|+++.++..++.+|...|++++|...++++.+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999864
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=3.7e-15 Score=153.24 Aligned_cols=241 Identities=9% Similarity=0.018 Sum_probs=171.0
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
+..+|...|+++.|...++... .|+..++..+...|...|+.++|++.++++.. .+..|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~--~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~--~~~~P----------------- 98 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSS--APELQAVRMFAEYLASHSRRDAIVAELDREMS--RSVDV----------------- 98 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTS--CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH--SCCCC-----------------
T ss_pred HHHHHHHCCCHHHHHHHhcccC--ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh--cccCC-----------------
Confidence 3445555555555555443321 23444445555555555555555555555544 22333
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.++.++..+...|...|++++|.+.|++ ..+...|..++..|.+.|+.++|.+.|+++.+
T Consensus 99 ------------------~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 99 ------------------TNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp ------------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4566667788899999999999999998 56778899999999999999999999999998
Q ss_pred cCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 003273 557 EGLAPDGVTF---LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TP 631 (834)
Q Consensus 557 ~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 631 (834)
. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| ++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4 5774321 12233444568999999999999864 4457888999999999999999999999886 3334 57
Q ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHH
Q 003273 632 IIWVALLNGCRIHANVEL-GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 686 (834)
.+|..++..+...|+.++ +.+.++++++++|+++.+. ++..+.+.++++..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 789999988888888765 6788899999999887553 44555555555543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=1.3e-14 Score=149.26 Aligned_cols=243 Identities=13% Similarity=0.045 Sum_probs=193.0
Q ss_pred HHhCCChHHHHHHHHhcCCCCCCc--cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 401 YAKCKSVDVARVMFDAIAPKNRDV--ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 401 y~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
....|+++.|+..++......|+. .....+..+|...|++++|+..++.. .|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~------------------- 62 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SA------------------- 62 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SC-------------------
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CC-------------------
Confidence 445678888888877766444432 24455667778888888777654321 11
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
++......+...|...|+.++|.+.++++. .| +...|..+...+.+.|++++|++.+++
T Consensus 63 ----------------~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 63 ----------------PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp ----------------HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred ----------------hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 455666788899999999999999999874 24 556777778899999999999999997
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH---HHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 003273 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE---HYACIVDLLGRANRLDEAVELIEGM--PME 628 (834)
Q Consensus 554 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 628 (834)
..+...+..+...+.+.|++++|.+.|+.+.+. .|+.. ...+++..+...|++++|..+|+++ ..+
T Consensus 127 ------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p 197 (291)
T 3mkr_A 127 ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS 197 (291)
T ss_dssp ------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999999999854 35532 2234456666679999999999988 233
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh-HHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD-VARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 694 (834)
.+...|+.+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999987 56888888764
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=8.6e-16 Score=161.50 Aligned_cols=258 Identities=10% Similarity=-0.005 Sum_probs=193.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a 470 (834)
..+..+...+.+.|++++|..+|+++....| +...|..+...|...|++++|+..|+++.+ ..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~----------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDP----------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCc-----------
Confidence 3445566667777777777777776654344 455666666777777777777777777665 233
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHH-------------
Q 003273 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSL------------- 534 (834)
Q Consensus 471 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~l------------- 534 (834)
.+...+..+...|.+.|++++|...|+++. .| +...+..+
T Consensus 87 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 87 ------------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------
T ss_pred ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHH
Confidence 344555666677777777777777777665 12 22233322
Q ss_pred -HH-HHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 535 -MT-GYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 535 -i~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
.. .+...|++++|+..++++.+. .| +...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLAN 218 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 22 367788899999999999884 45 4778888999999999999999999998753 23457789999999999
Q ss_pred cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHh
Q 003273 612 ANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESE------------KDGSYTLLSNIYAN 677 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~ 677 (834)
.|++++|.+.++++ ... .+...|..+...+...|+.+.|...+++++++.|+ ++.++..++.+|..
T Consensus 219 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999999999886 222 45778999999999999999999999999999998 68899999999999
Q ss_pred cCCchhHHHHHHHHH
Q 003273 678 AGRWKDVARIRSLMK 692 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~ 692 (834)
.|++++|..+++...
T Consensus 299 ~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 299 MNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999886543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=9.2e-15 Score=153.55 Aligned_cols=261 Identities=15% Similarity=0.033 Sum_probs=145.9
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
+...|..+...+...|++++|+.+|+++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------~~~~~~ 57 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA------------------------------------------PEREEA 57 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------------------------CCCHHH
Confidence 44556666667777777777777777766521 223334
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH----
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL---- 468 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll---- 468 (834)
+..+...|.+.|++++|...|+++....| +...|..+...|...|++++|++.|+++.. ..|+.......+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQAD 133 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSTTTTTC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHhHHH
Confidence 44555555556666666666655543333 445566666666666666666666666655 233332222111
Q ss_pred ----------HH--HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHH
Q 003273 469 ----------MA--CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTS 533 (834)
Q Consensus 469 ----------~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~ 533 (834)
.. +...|+++.|...+..+.+... .++.++..+...|.+.|++++|...|+++. ..+...|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 211 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP--NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 22 4555666666666666665443 345556666666666666666666666554 234556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----------ChHHH
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA----------RAEHY 602 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----------~~~~~ 602 (834)
+...+...|++++|+..|+++.+ ..|+ ..++..+..++...|++++|.++++.+.+...-.. +...+
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 66666666666666666666666 2343 55566666666666666666666666543211000 23445
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 003273 603 ACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
..+..+|.+.|++++|.+++++
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 5555555555555555555543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=176.44 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhH---hcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMR---QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 356 (834)
..+||+||++|++.|++++|.++|++|. .+|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998876 4588999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhchh-hhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---CCccchHHHHH
Q 003273 357 LSGCASVGAL-LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---RDVATWTVMIG 432 (834)
Q Consensus 357 l~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~~~li~ 432 (834)
|.++++.|.. +.|.+++..|... |+.||..+|++++..+.+.+-++...+++..+.... +.+.+.+.|..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k------G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE------GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH------TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc------CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999875 6788999999999 999999999999887777655555555544433211 12344455566
Q ss_pred HHHhcC
Q 003273 433 SYSQNG 438 (834)
Q Consensus 433 ~~~~~g 438 (834)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666555
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=174.94 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=115.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK-------QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 567 (834)
....+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 455689999999999999999999997753 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 568 VLLYACSHSGM-VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 568 ~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
+||.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999998 57899999999865 99999999999998888876666665554444
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=5.5e-14 Score=137.87 Aligned_cols=193 Identities=16% Similarity=0.050 Sum_probs=158.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 667788889999999999999999999876 34677899999999999999999999999999 5786 77888899
Q ss_pred HHHHhc-----------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 003273 571 YACSHS-----------GMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVAL 637 (834)
Q Consensus 571 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 637 (834)
.++... |++++|...|+...+ +.| +...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 999999999999875 345 4678899999999999999999999987 212678899999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
...+...|+.++|+..++++++++|+++.++..++.+|...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=4.5e-13 Score=136.56 Aligned_cols=247 Identities=11% Similarity=-0.049 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcc--cHHHHHH
Q 003273 393 VINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF--TLSCALM 469 (834)
Q Consensus 393 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~--t~~~ll~ 469 (834)
+.......|.+.|++++|...|+++....| +...|..+...|...|++++|+..|++... ..-.|+.. .+..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS--KVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--ccCchhHHHHHHHHHHH
Confidence 345567788889999999999998876665 455888888899999999999999998876 32222211 1334444
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 003273 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 470 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 549 (834)
.+...|+++.|...+..+.+... . +...|..+...|...|++++|+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~--~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT--T-------------------------------RLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST--T-------------------------------CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc--c-------------------------------cHHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444444444444322 2 33444444555555555555555
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC---HHHHHHHHHh
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANR---LDEAVELIEG 624 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~ 624 (834)
.|++..+ ..|+ ...+..+...+...+++++|...|+.+.+. .|+ ...+..+..++...|+ +++|...+++
T Consensus 130 ~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 130 YMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 5555444 2333 333333331222333555555555554431 222 3344444444444444 4444444433
Q ss_pred C----CCCCC------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 003273 625 M----PMEPT------PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 625 ~----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 679 (834)
+ ...|+ ..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 3 11122 2467778888888999999999999999999999888777766655443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.1e-13 Score=134.13 Aligned_cols=92 Identities=7% Similarity=-0.074 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.+..+...+.+.|++++|.+.++++ . .+.+...|..+...+...|+.+.|...++++++..|+++.++..++.+|...
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443 1 1123444555555555555555555555555555555555555555555555
Q ss_pred CCchhHHHHHHHHH
Q 003273 679 GRWKDVARIRSLMK 692 (834)
Q Consensus 679 g~~~~a~~~~~~m~ 692 (834)
|++++|...++...
T Consensus 221 g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 221 KEYASALETLDAAR 234 (258)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555554443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.1e-12 Score=132.33 Aligned_cols=235 Identities=9% Similarity=-0.013 Sum_probs=199.4
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccc------h
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI------P 497 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 497 (834)
...|..+...+...|++++|+..|+++++ .. .+...+..+..++...|+++.|...+..+.+.... .. +
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWE--LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHH
Confidence 35688899999999999999999999998 44 77788888999999999999999999998875432 11 6
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS 574 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 574 (834)
.++..+...|.+.|++++|...|+++. .|+. ..+...|++++|+..++++.. ..|+ ...+..+...+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHH
Confidence 788999999999999999999999887 4553 346677889999999999998 5675 677888899999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGEL 652 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 652 (834)
..|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.+++. ... .+...|..+...+...|+.+.|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999853 2345788999999999999999999999887 223 357789999999999999999999
Q ss_pred HHHHHHhcC------CCCCchHHHHHHH
Q 003273 653 AANRLLELE------SEKDGSYTLLSNI 674 (834)
Q Consensus 653 ~~~~~~~~~------p~~~~~~~~l~~~ 674 (834)
.+++++++. |++...+..+..+
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999 8777666666543
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=3.8e-13 Score=142.98 Aligned_cols=245 Identities=10% Similarity=0.072 Sum_probs=198.2
Q ss_pred hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCC-hhHHHHHHHhhcccCCCCcCCcccHHHH
Q 003273 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGG-ANDALALFPQMFQQDKLVKPNAFTLSCA 467 (834)
Q Consensus 390 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~g~~p~~~t~~~l 467 (834)
+..+++.+...|.+.|++++|...|+++....| +...|+.+...|...|+ +++|+..|++++. +.|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P-------- 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQP-------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCT--------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCC--------
Confidence 455677788888888888888888888776566 56778888888888886 8888888888876 445
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 003273 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG 544 (834)
Q Consensus 468 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 544 (834)
.+..+++.+..+|.+.|++++|...|+++. ..+...|..+..++...|++
T Consensus 164 ---------------------------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 164 ---------------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred ---------------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 556677888888899999999999999887 35778999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh-cCCHHHH-----HHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcC--C
Q 003273 545 DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSH-SGMVDQG-----LKYFDSMSKEFGISA-RAEHYACIVDLLGRAN--R 614 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g--~ 614 (834)
++|+..|+++++ +.|+ ...|+.+..++.. .|..++| +..|+..++ +.| +...|..+..+|.+.| +
T Consensus 217 ~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 217 DNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp TTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGG
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccc
Confidence 999999999999 6775 7788888888888 6665777 477887764 345 4678888999999988 6
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------c-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 003273 615 LDEAVELIEGMPMEPT-PIIWVALLNGCRIHA--------N-VELGELAANRL-LELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 678 (834)
+++|++.++++...|+ ...+..|...+...| + .++|+.+++++ ++++|.....|..++..+...
T Consensus 292 ~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 292 YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8999999988754454 667888888887764 3 58999999999 999999888888888776543
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=3.2e-13 Score=137.78 Aligned_cols=214 Identities=10% Similarity=-0.052 Sum_probs=159.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMH 541 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 541 (834)
..+...+...|+++.|...+..+.+... .++.++..+...|...|++++|...|+++. ..+...|..+...|...
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 3333344444444444444444444322 456777888999999999999999999887 34678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
|++++|+..|+++.+ ..|+.......+..+...|++++|..+++..... .+++...+ .++..+...++.++|.+.
T Consensus 125 g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 999999999999998 5677655555666667789999999999887753 23343344 477788888899999999
Q ss_pred HHhCC-CCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 622 IEGMP-MEPT-----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 622 ~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+++.- ..|+ ...|..+...+...|+.+.|...++++++++|++...+ +.++...|++++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 98763 2232 56888899999999999999999999999999775544 66788889998887665
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=1.2e-12 Score=128.13 Aligned_cols=195 Identities=15% Similarity=0.020 Sum_probs=126.2
Q ss_pred CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHH
Q 003273 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466 (834)
Q Consensus 388 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ 466 (834)
|++...+..+...+.+.|++++|...|++.....| +...|..+...|.+.|++++|+..|++.++ ..|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~------ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPR------ 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC------
Confidence 45667788888888999999999999988876665 567788888888899999999999988877 4564
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhc-----------CCHHHHHHHHhhcC--CC-ChhHHH
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS-----------GDIDTARVVFDNLK--QR-NVVSWT 532 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~--~~-~~~~~~ 532 (834)
++..+..+...|.+. |++++|...|++.. .| +...|.
T Consensus 72 -----------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 72 -----------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 333344444555554 66677776666655 23 455667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 612 (834)
.+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+...+. -+.+...+..+..++.+.
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 77777777777777777777777754 55666777777777777777777777776642 122355666677777777
Q ss_pred CCHHHHHHHHHhC
Q 003273 613 NRLDEAVELIEGM 625 (834)
Q Consensus 613 g~~~~A~~~~~~~ 625 (834)
|++++|.+.+++.
T Consensus 199 g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 199 GKAEEAARAAALE 211 (217)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHHH
Confidence 7777777766654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=5.2e-12 Score=124.23 Aligned_cols=197 Identities=12% Similarity=0.066 Sum_probs=168.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 570 (834)
.++.++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 556777888899999999999999999876 345778999999999999999999999999884 45 477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 003273 571 YACSHS-GMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHAN 646 (834)
Q Consensus 571 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 646 (834)
..+... |++++|..+++.+.+ .+..|+ ...+..+..++.+.|++++|++.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 899999 999999999999875 233443 677888999999999999999999877 2223 47788889999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 647 VELGELAANRLLELES-EKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+.|...++++++..| +++..+..++.++...|+.+++..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88899999999999999999999999988754
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=7.1e-12 Score=125.97 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=129.7
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...|..+...|...|++++|++.|+++.+ ..| .+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~-----------------------------------~~~~~~~~l 77 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDP-----------------------------------SSADAHAAL 77 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCT-----------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC-----------------------------------ChHHHHHHH
Confidence 45566777777788888888888877765 223 334445566
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 003273 504 IDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMV 579 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 579 (834)
...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.+..|+ ...+..+..++...|++
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 666677777777777776654 23555666677777777777777777777766334453 45566666677777777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++++
T Consensus 158 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 158 AQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777766542 1223555666666666677777776666655 222 33455666666666667777777777777
Q ss_pred HhcCCCCCch
Q 003273 658 LELESEKDGS 667 (834)
Q Consensus 658 ~~~~p~~~~~ 667 (834)
++..|+++..
T Consensus 236 ~~~~p~~~~~ 245 (252)
T 2ho1_A 236 KRLYPGSLEY 245 (252)
T ss_dssp HHHCTTSHHH
T ss_pred HHHCCCCHHH
Confidence 7777665543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=8.5e-12 Score=126.98 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=166.8
Q ss_pred eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHH
Q 003273 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394 (834)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (834)
...+......+...|++++|+..|++..+. .|.+..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------------------------~p~~~~~~ 40 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK------------------------------------------KYNSPYIY 40 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------------------------------------TCCCSTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------------------------CCCcHHHH
Confidence 445566677788888888888888887763 23344456
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCcc----chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVA----TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a 470 (834)
..+...|.+.|++++|...|++.....++.. .|..+...|...|++++|++.|++..+ ..|+....
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~------ 110 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTRLDM------ 110 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHH------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCcccHHH------
Confidence 6677777788888888888877765333322 267778888888888888888888876 44543211
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHH
Q 003273 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKA 547 (834)
Q Consensus 471 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 547 (834)
+..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 111 -----------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 111 -----------------------------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp -----------------------------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 24566677778888888888887763 3455677666334445588999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHhhcCCHHH
Q 003273 548 HWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM---VDQGLKYFDSMSKEFGISAR------AEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~ 617 (834)
+..|+++.+ ..|+ ...+..+..++...|+ +++|...++.+.+...-.|+ ...|..+...|.+.|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998888 5565 6667777777877777 77788888877654433344 2577788888999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHH
Q 003273 618 AVELIEGM-PMEP-TPIIWVALLNG 640 (834)
Q Consensus 618 A~~~~~~~-~~~p-~~~~~~~ll~~ 640 (834)
|.+.++++ ...| +...+..+...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhh
Confidence 99998877 2334 34455544433
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=5e-12 Score=127.11 Aligned_cols=196 Identities=9% Similarity=-0.046 Sum_probs=173.2
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYA 572 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 572 (834)
+..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5677888899999999999999999886 346778999999999999999999999999984 45 47788889999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~ 649 (834)
+...|++++|..+++.+.+ .+..| +...+..+..+|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999875 23455 4678889999999999999999999887 222 357789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
|...++++++..|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998753
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.3e-12 Score=138.50 Aligned_cols=274 Identities=12% Similarity=0.016 Sum_probs=186.9
Q ss_pred CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 387 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.+.....+..+...+.+.|++++|...|+++....|+ ...|..+...|...|++++|+..|++... +.+
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~-- 78 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT----LAR-- 78 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHH--
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHH--
Confidence 3445556667778888888999998888887654443 24677788888888888888888887754 100
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHH
Q 003273 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWT 532 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~ 532 (834)
+.+..+....++..+...|...|++++|...|++..+ ++ ..+|.
T Consensus 79 ---------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 79 ---------------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp ---------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 0000002344556666777777777777777766541 22 33677
Q ss_pred HHHHHHHHcCC--------------------hHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 533 SLMTGYGMHGL--------------------GDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 533 ~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
.+...|...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|..+++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777787 78888877776542 11222 3457777778888888888888888
Q ss_pred HhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 003273 588 SMSKEFGISAR----AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAAN 655 (834)
Q Consensus 588 ~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 655 (834)
...+...-.++ ...+..+..+|...|++++|.+.+++.- ..++ ..++..+...+...|+++.|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 76543211122 3367778888888888888888887651 1112 4467777777888888888888888
Q ss_pred HHHhcCCCC------CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 656 RLLELESEK------DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 656 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+++++.+.. ..++..++.+|...|++++|.+.++...+
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888875443 45778888888888998888888887764
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=1.1e-11 Score=136.10 Aligned_cols=250 Identities=11% Similarity=0.046 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHhCCC----hHHHHHHHHhcCCCCCCccchHHHHHHHHhcC---ChhHHHHHHHhhcccCCCCcCCccc
Q 003273 391 LMVINALIDMYAKCKS----VDVARVMFDAIAPKNRDVATWTVMIGSYSQNG---GANDALALFPQMFQQDKLVKPNAFT 463 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~----~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~g~~p~~~t 463 (834)
......|..+|...+. .+.+..+++... ..++..+..+...|...| +.++|++.|++..+ .| |
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g--~---- 210 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS--RG--T---- 210 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TT--C----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CC--C----
Confidence 3445566666666663 344455555555 333447777777777777 77777777777765 22 1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H
Q 003273 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS----GDIDTARVVFDNLKQRNVVSWTSLMTG-Y 538 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~ 538 (834)
.....+..|..+|... ++.++|...|++....+...+..|... |
T Consensus 211 -------------------------------~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 211 -------------------------------VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY 259 (452)
T ss_dssp -------------------------------SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2333334555555444 678888888887773356677777666 3
Q ss_pred --HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 539 --GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG-----MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 539 --~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
...|+.++|+..|++..+.| +...+..|...|. .| ++++|..+|+... .-+...+..|..+|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRR 330 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHC
Confidence 45788889999998888765 5666666766666 45 8888988887664 3456667777777766
Q ss_pred ----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--cCCc
Q 003273 612 ----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELESEKDGSYTLLSNIYAN--AGRW 681 (834)
Q Consensus 612 ----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~ 681 (834)
..++++|.++|++.-...+......|...|.. ..|.+.|...++++.+..+. .+...+..+... .++.
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQR 408 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHH
Confidence 34888999998887433345555566665543 45888999999998887753 344444444332 2344
Q ss_pred hhHHHHHHHHH
Q 003273 682 KDVARIRSLMK 692 (834)
Q Consensus 682 ~~a~~~~~~m~ 692 (834)
++|.++.+..+
T Consensus 409 ~~a~~~~~~~~ 419 (452)
T 3e4b_A 409 AEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.5e-12 Score=129.95 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=112.6
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 423 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
....|..+...+...|++++|+..|+++.+ ..| .+...+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~-----------------------------------~~~~~~~~ 62 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENK-----------------------------------EDAIPYIN 62 (243)
T ss_dssp --------------------CCTTHHHHHT----TCT-----------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCc-----------------------------------ccHHHHHH
Confidence 344555556666666666666666666654 222 23334445
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM 578 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 578 (834)
+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .| +...+..+...+...|+
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 5555566666666666665554 234556666666666677777777777776663 33 35556666666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
+++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ . .+.+..+|..+...+...|+.+.|...+++
T Consensus 141 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 141 PKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777666542 1224555666666666666666666666654 1 123355666666666677777777777777
Q ss_pred HHhcCCCCCchHHHHHHHH
Q 003273 657 LLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 657 ~~~~~p~~~~~~~~l~~~~ 675 (834)
++++.|+++.++..++.+.
T Consensus 219 ~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 219 AIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHCTTCHHHHHHHTC--
T ss_pred HHccCcchHHHHHHHHHHH
Confidence 7777776666555554443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=8.2e-12 Score=122.79 Aligned_cols=207 Identities=11% Similarity=-0.039 Sum_probs=151.3
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...|..+...|...|++++|++.|+++.+ ..| .+...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~l 48 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALK----SDP-----------------------------------KNELAWLVR 48 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hCc-----------------------------------cchHHHHHH
Confidence 44555566666666666666666666654 223 334455666
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003273 504 IDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM 578 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 578 (834)
...|...|++++|...|+++. ..+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|+
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 777777777777777777665 33566778888888888 888888888888887434454 5667788888888899
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME--PTPIIWVALLNGCRIHANVELGELAAN 655 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 655 (834)
+++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++
T Consensus 129 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 129 FGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999988888753 2234677888888899999999999888876 222 356677777777889999999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 003273 656 RLLELESEKDGSYTLL 671 (834)
Q Consensus 656 ~~~~~~p~~~~~~~~l 671 (834)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9999999887765544
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=4.2e-12 Score=129.43 Aligned_cols=241 Identities=15% Similarity=-0.019 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHhHhcCCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhh
Q 003273 293 IGSFEDAFALFKKMRQENVK---LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 369 (834)
.|++++|+..|+++.+.... .+..+|..+...+...|++++|+..|+++.+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------- 72 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------------------------- 72 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------------------------
Confidence 45566666666666554211 13445556666666666666666666665542
Q ss_pred hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHH
Q 003273 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFP 448 (834)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~ 448 (834)
.+.+..++..+...|.+.|++++|...|+++....| +...|..+...|.+.|++++|+..|+
T Consensus 73 -----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 73 -----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 223344555556666666666666666666554333 45566666777777777777777777
Q ss_pred hhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC-
Q 003273 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN- 527 (834)
Q Consensus 449 ~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~- 527 (834)
++.+ ..|+.......+..+...|+++.|...+........ .+...+ .++..+...++.++|...++.....+
T Consensus 136 ~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 136 AFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGW-NIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 7765 445544444444444445555555555555444332 222222 25555556666666666666665322
Q ss_pred ------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003273 528 ------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586 (834)
Q Consensus 528 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 586 (834)
...|..+...|...|++++|...|+++.+ ..|+... ....++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~--~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNFV--EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTCH--HHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhHH--HHHHHHHHHHHHHhhHHHH
Confidence 34556666666666666666666666665 3443211 1133444555555555443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.7e-12 Score=128.08 Aligned_cols=196 Identities=8% Similarity=0.036 Sum_probs=155.7
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 570 (834)
..+..+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|+++.+. .| +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 455667778888999999999999999886 346778999999999999999999999999984 55 477888899
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~ 648 (834)
..+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|+.+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998763 2346778899999999999999999999887 22 346778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999775
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=2.9e-12 Score=136.21 Aligned_cols=225 Identities=10% Similarity=0.035 Sum_probs=188.3
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...|+.+...+.+.|++++|+..|++.+. +.| .+..+++.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P-----------------------------------~~~~a~~~~ 137 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNA-----------------------------------ANYTVWHFR 137 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCc-----------------------------------cCHHHHHHH
Confidence 34577777777888888888888888876 445 556677888
Q ss_pred HHHHHhcCC-HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003273 504 IDMYSRSGD-IDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM 578 (834)
Q Consensus 504 i~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 578 (834)
...|.+.|+ +++|...|+++. ..+...|+.+...+...|++++|+..|+++++ +.|+ ...|..+..++...|+
T Consensus 138 g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCC
Confidence 889999997 999999999887 34778999999999999999999999999999 6785 7889999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--cH
Q 003273 579 VDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGR-ANRLDEA-----VELIEGM-PMEP-TPIIWVALLNGCRIHA--NV 647 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~ 647 (834)
+++|+..|+.+++ +.| +...|+.+..+|.+ .|..++| ++.+++. ...| +...|..+...+...| +.
T Consensus 216 ~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 216 WDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp CTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred hHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 9999999999985 344 57789999999999 6665777 4777665 3334 5779999999998888 68
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------CchhHHHHHHHH-Hh
Q 003273 648 ELGELAANRLLELESEKDGSYTLLSNIYANAG---------RWKDVARIRSLM-KH 693 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 693 (834)
+.|...++++ +.+|+++.++..|+++|.+.| .+++|.++++.+ .+
T Consensus 293 ~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 293 PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999985 258899999988 44
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=8.3e-12 Score=131.13 Aligned_cols=268 Identities=12% Similarity=0.018 Sum_probs=193.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCC-----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRD-----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
+......+.+.|++++|...|+++....|+ ...|..+...|...|++++|++.|++... +.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~---------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT----LA---------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HH----------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----Hh----------
Confidence 344566777888888888888877644443 24567777788888888888888877654 10
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYG 539 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~ 539 (834)
.+.+..+....++..+...|...|++++|...|++..+ ++ ..+|..+...|.
T Consensus 74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00011113345566777888888888888888877651 22 336777888888
Q ss_pred HcCC--------------------hHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 540 MHGL--------------------GDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 540 ~~g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
..|+ +++|+..+++.... +..|. ..++..+...+...|++++|..+++...+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888 88888888876542 21222 44677788888999999999999988764321
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 595 ISAR----AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 595 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
-.++ ...+..+...|.+.|++++|.+.+++.. ..++ ..++..+...+...|+.+.|...+++++++.|
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1122 3477888899999999999999888761 1122 45777888889999999999999999988765
Q ss_pred CC------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 663 EK------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 663 ~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.. ..++..++.+|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 43 347889999999999999999999988764
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.3e-11 Score=117.42 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=128.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 605 (834)
+...|..+...|.+.|++++|+..|++.++ +.|+ ..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 455677777778888888888888888777 5665 666777777888888888888888777642 23345566677
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 606 VDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
...+...+++++|.+.+++. ... .+...|..+...+...|+.++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77788888888888887766 222 3567888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003273 684 VARIRSLMKHT 694 (834)
Q Consensus 684 a~~~~~~m~~~ 694 (834)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=6.5e-10 Score=126.04 Aligned_cols=198 Identities=12% Similarity=-0.032 Sum_probs=138.7
Q ss_pred HHHHHHHHhhhhhHHHHH-HHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------------CC--
Q 003273 464 LSCALMACARLAALRFGR-QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------------RN-- 527 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------~~-- 527 (834)
+.....-+...|+.+.+. .++...+.... .+..++-..+....+.|+++.|..+|+++.. |+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIP--NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 333333344445555554 66655554321 4555566667777777777777777776652 21
Q ss_pred ----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHhHHhcCCC
Q 003273 528 ----------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH-SGMVDQGLKYFDSMSKEFGIS 596 (834)
Q Consensus 528 ----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~ 596 (834)
...|-..+....+.|..+.|..+|.+.++.-..+....|......-.+ .++.+.|..+|+...+.+.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-- 501 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-- 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--
Confidence 236888888888889999999999999885111123334333322233 3558999999999987643
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 597 ARAEHYACIVDLLGRANRLDEAVELIEGMP-MEP----TPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
-+...+...++.....|+.+.|..+|++.- ..| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 345567888999999999999999999873 223 246899999999999999999999999999999865
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.9e-12 Score=140.83 Aligned_cols=271 Identities=11% Similarity=-0.002 Sum_probs=193.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc-----cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV-----ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
...+..+...+...|++++|...|+++....|+. ..|..+...|...|++++|+..|++.+. ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~--------- 116 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--LA--------- 116 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HH---------
Confidence 3344556677888888888888888876544542 3577777888888888888888887765 10
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHHHHH
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----R----NVVSWTSLMT 536 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~----~~~~~~~li~ 536 (834)
.+.+..+....++..+...|...|++++|...|++..+ . ...+|..+..
T Consensus 117 ----------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 117 ----------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 00000113445566677777788888888877776651 1 2346777777
Q ss_pred HHHHcCC-----------------hHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 537 GYGMHGL-----------------GDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 537 ~~~~~g~-----------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
.|...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|..+++...+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8888888 88888888876552 12222 45677788888899999999999887764321
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 595 ISAR----AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 595 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
-.++ ...+..+..+|...|++++|.+.+++.. ...+ ..+|..+...+...|+.+.|...+++++++.+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1112 2367888889999999999999887661 1111 45778888889999999999999999988755
Q ss_pred CC------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 663 EK------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 663 ~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+. ..++..++.+|...|++++|.+.++...+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 43 348889999999999999999999988754
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=2.3e-11 Score=133.41 Aligned_cols=344 Identities=9% Similarity=-0.033 Sum_probs=208.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG---HEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 362 (834)
+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|+..|++..+. +...+..+-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556677888899999998887765 555666666777777777 8888888887753 22223223221222
Q ss_pred h-----chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHH---HHHHHhcCCCCCCccchHHHHHHH
Q 003273 363 V-----GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA---RVMFDAIAPKNRDVATWTVMIGSY 434 (834)
Q Consensus 363 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A---~~~f~~~~~~~~~~~~~~~li~~~ 434 (834)
. ++.++|...+....+. +.+. ....|..+|...+..+.+ .+.+..... ..+...+..+...|
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~------g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN------GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AGYPEAGLAQVLLY 151 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT------TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HTCTTHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC------CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 1 2455555555555543 3221 444455555544433222 222222110 01233333344444
Q ss_pred HhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC---
Q 003273 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG--- 511 (834)
Q Consensus 435 ~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--- 511 (834)
...+.++++.. .+..++... .. .++..+..|..+|.+.|
T Consensus 152 ~~~~~~~~~~~---------------------------------~a~~~~~~a----~~-~~~~a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 152 RTQGTYDQHLD---------------------------------DVERICKAA----LN-TTDICYVELATVYQKKQQPE 193 (452)
T ss_dssp HHHTCGGGGHH---------------------------------HHHHHHHHH----TT-TCTTHHHHHHHHHHHTTCHH
T ss_pred HcCCCcccCHH---------------------------------HHHHHHHHH----Hc-CCHHHHHHHHHHHHHcCCcc
Confidence 43333322222 222222222 11 44557788899999999
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCChhHHHHHHHH-H--HhcCCHHH
Q 003273 512 DIDTARVVFDNLK---QRNVVSWTSLMTGYGMH----GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA-C--SHSGMVDQ 581 (834)
Q Consensus 512 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~ 581 (834)
+.++|...|++.. .++...+..|...|... ++.++|+..|++.. . -+...+..|... + ...+++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHH
Confidence 8999999999876 34455557777777554 68999999999986 2 235566666666 4 56899999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRAN-----RLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGEL 652 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~ 652 (834)
|..+|++..+. | +...+..|..+|. .| ++++|.++|++.. ..++..+..|...|.. ..|.++|..
T Consensus 270 A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 270 MMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99999998753 4 5677788888887 55 9999999999998 6677788888777665 349999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhcCC
Q 003273 653 AANRLLELESEKDGSYTLLSNIYAN----AGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 653 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 696 (834)
.++++.+. .++.+...|+.+|.. ..+.++|..+++...+.|.
T Consensus 344 ~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 344 HLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998875 457889999999985 4588999999999887764
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=9.5e-11 Score=119.37 Aligned_cols=224 Identities=12% Similarity=-0.027 Sum_probs=182.4
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 423 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
+..++..+...|...|++++|+..|++..+ | .++..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~-----------------------------------~~~~a~~~ 43 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------L-----------------------------------KENSGCFN 43 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------T-----------------------------------TCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------C-----------------------------------CCHHHHHH
Confidence 445566666666677777777777766654 1 34455667
Q ss_pred HHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003273 503 LIDMYSR----SGDIDTARVVFDNLK-QRNVVSWTSLMTGYGM----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573 (834)
Q Consensus 503 li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 573 (834)
+..+|.. .|++++|...|++.. ..+...|..+...|.. .|++++|+..|++..+.+ +...+..+...|
T Consensus 44 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 44 LGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHH
Confidence 7788888 899999999998876 3467788888889998 999999999999998864 677888888888
Q ss_pred Hh----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 003273 574 SH----SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI-- 643 (834)
Q Consensus 574 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-- 643 (834)
.. .+++++|..+|+...+. + +...+..+..+|.+ .+++++|.+.+++.....+...+..+...+..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 88 99999999999988753 3 56677888888888 89999999999887333467788888888888
Q ss_pred --cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhcCC
Q 003273 644 --HANVELGELAANRLLELESEKDGSYTLLSNIYAN----AGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 644 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 696 (834)
.++.++|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999999877 7789999999999 9999999999999987653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=4.5e-12 Score=137.40 Aligned_cols=155 Identities=14% Similarity=-0.016 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----h
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR----A 599 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 599 (834)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566677777777778888777777665210 111 236777777788888888888888776532111111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------CC
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESE------KD 665 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 665 (834)
..+..+...|.+.|++++|.+.+++.. ..++ ..+|..+...+...|+.+.|...+++++++.+. ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567778888888888888888887651 1122 457778888899999999999999999887432 34
Q ss_pred chHHHHHHHHHhcCCchh
Q 003273 666 GSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~ 683 (834)
.++..++.+|...|+...
T Consensus 348 ~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 578889999988887643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=4.7e-12 Score=139.89 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=170.5
Q ss_pred cchhHHhHHHHHHHhcCCH-HHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDI-DTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 570 (834)
.+...+..+...|...|++ ++|...|++.. . .+...|..+...|...|++++|+..|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 5677888899999999999 99999999886 3 4577999999999999999999999999998 678888889999
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 003273 571 YACSHS---------GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA--------NRLDEAVELIEGM-PMEP--- 629 (834)
Q Consensus 571 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 629 (834)
.++... |++++|...|++..+. -+.+...|..+..+|.+. |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999998753 233477899999999998 9999999999987 3345
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 630 -TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 630 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999998765443
No 63
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=6.7e-11 Score=120.47 Aligned_cols=227 Identities=13% Similarity=-0.014 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh----cCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ----NGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
.+...+..+...|.+.|++++|...|++... ..+..++..+...|.. .+++++|+..|++..+ .
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~--------- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--L--------- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T---------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH--C---------
Confidence 3566778889999999999999999999874 3356778888899999 9999999999998876 2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHHHHHH
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR----SGDIDTARVVFDNLK-QRNVVSWTSLMTGYG 539 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~ 539 (834)
.++..+..+..+|.. .+++++|...|++.. ..+...+..+...|.
T Consensus 72 ------------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 72 ------------------------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121 (273)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 223444566677777 888888888888776 346778888888888
Q ss_pred H----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 540 M----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH----SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 540 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
. .|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.+
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHc
Confidence 8 899999999999998854 56667777778887 89999999999988753 245677888889988
Q ss_pred ----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCC
Q 003273 612 ----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELESEK 664 (834)
Q Consensus 612 ----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 664 (834)
.+++++|++.+++.....+...+..+...+.. .++.++|...++++++++|++
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 99999999999887322346778888888888 899999999999999999853
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=1.6e-11 Score=133.57 Aligned_cols=281 Identities=11% Similarity=0.025 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCe----eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV----VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 356 (834)
..+..+...+...|++++|...|++..+.+.. +. ..|..+...|...|++++|+..|++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 116 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA----------- 116 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
Confidence 34556677888999999999999998887443 32 467788888889999999999888876410
Q ss_pred HHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-------CCccchHH
Q 003273 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-------RDVATWTV 429 (834)
Q Consensus 357 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~~~ 429 (834)
...+ ..+....++..+...|...|++++|...|++..... ....+|..
T Consensus 117 ----~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 117 ----KSMN---------------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp ----HHTT---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----HHcc---------------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 0000 112234566777788888888888888877654220 01234555
Q ss_pred HHHHHHhcCC-----------------hhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 003273 430 MIGSYSQNGG-----------------ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492 (834)
Q Consensus 430 li~~~~~~g~-----------------~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 492 (834)
+...|...|+ +++|++.|++... +. .+.+.
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~------------------------------~~---~~~~~ 218 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK------------------------------LM---RDLGD 218 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH------------------------------HH---HHHTC
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH------------------------------HH---HHcCC
Confidence 5555555565 4444444433322 00 00011
Q ss_pred CccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHH
Q 003273 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APD----GVTFL 567 (834)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~ 567 (834)
.+.....+..+...|...|++++|...|++.. +... .++ ..++.
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-------------------------------RIAREFGDRAAERRANS 267 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------------------HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------------------HHHHhcCCcHHHHHHHH
Confidence 00222344455555555555555555555443 2100 000 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCC----CChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHH
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGIS----ARAEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWV 635 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~ 635 (834)
.+...+...|++++|..+++...+...-. .....+..+..+|.+.|++++|.+.+++.. ..++ ..++.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 44444555555555555554443211000 013445555556666666666666555441 0011 33666
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 636 ALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
.+...+...|+.+.|...+++++++.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 677778888888888888888888765
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=9.8e-09 Score=116.42 Aligned_cols=464 Identities=8% Similarity=0.012 Sum_probs=264.4
Q ss_pred chhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---hhHHHHH
Q 003273 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT---LSYARQL 192 (834)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~---~~~A~~~ 192 (834)
..+.+..|++.+... +-|..+|..+++.+.+.+.+..++.+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444555555555543 446667888888877777888888888888876 46677788888888888888 8899999
Q ss_pred HHhcCCCCC--CCcchHHHHHHHHHhCCCh--------hHHHHHHHHhhhCCCC-CCCc-cchHhHHHHhhccCCchhhh
Q 003273 193 FDEMFQPGI--CDIVSWNTIVAAYAQSGDA--------EGGLMLFARMTGDVKV-QGDG-VSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 193 ~~~m~~~~~--~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~~-~t~~~~l~a~~~~~~~~~~~ 260 (834)
|++.....+ |++..|...+.-..+.++. +...++|+......|. .|+. ..|...+...........-.
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 988877653 6777888877765554443 3344777776554466 6654 44555554433221111111
Q ss_pred hcCcHHHHHHHHHhcCC-C--C-hhHHH---HHHHHHH----------cCCCHHHHHHHHHHhHhc--CCC---CCee--
Q 003273 261 QCGMMEEAKKVFERMKV-K--D-VVSWN---AMVTGYS----------RIGSFEDAFALFKKMRQE--NVK---LNVV-- 316 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~-~--d-~~~~~---~li~~~~----------~~g~~~~A~~l~~~m~~~--g~~---p~~~-- 316 (834)
..+.++.++++|+.... | + ..+|. .+...+. ...+++.|...+.++... ++. |...
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 33457888888887763 2 1 12332 2222110 001223333344332211 110 0000
Q ss_pred -eHHHHHHHHHhcC-ChhHHHHHHHHHHH---C-CCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCCh
Q 003273 317 -TWSAVIAGYAQRG-HGHEALDVFRQMQF---C-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390 (834)
Q Consensus 317 -~~~~li~~~~~~g-~~~~A~~l~~~m~~---~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (834)
..+.+ -..+ .....+.++..... . +...+.. ........+++.++. ..+..
T Consensus 286 ~~~~~~----p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~------------~~~~Rv~~~Ye~aL~-------~~p~~ 342 (679)
T 4e6h_A 286 ATESNL----PKPNEYDVQQLLIWLEWIRWESDNKLELSDD------------LHKARMTYVYMQAAQ-------HVCFA 342 (679)
T ss_dssp CCTTTS----CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH------------HHHHHHHHHHHHHHH-------HTTTC
T ss_pred chhccC----CCCchhHHHHHHHHHHHHHHHHhCCccccch------------hhHHHHHHHHHHHHH-------HcCCC
Confidence 00000 0000 00111222222111 0 0000000 011233455666665 34556
Q ss_pred hhHHHHHHHHHHhCCChHHHH-HHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC---------cC
Q 003273 391 LMVINALIDMYAKCKSVDVAR-VMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV---------KP 459 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~~~~A~-~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~---------~p 459 (834)
..+|...+..+.+.|+.++|. .+|++.....| +...|-..+...-+.|++++|.++|++++. ... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~--~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID--RIHLDLAALMEDDP 420 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHhhhhhhccC
Confidence 667777777777777777775 77777654445 344566666667777788888888877765 210 13
Q ss_pred C------------cccHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCccchhHHhHHHHHHHhcC-CHHHHHHHHhhcC-
Q 003273 460 N------------AFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSG-DIDTARVVFDNLK- 524 (834)
Q Consensus 460 ~------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~~~- 524 (834)
+ ...|...+....+.+.++.|+.++..+.+. +. ....+|...+.+-.++| +.+.|.++|+...
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~--~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL--VTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG--SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2 235666667777778888888888888876 32 23344444444444544 4888888888776
Q ss_pred --CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH
Q 003273 525 --QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600 (834)
Q Consensus 525 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 600 (834)
..+...|...+.-....|+.+.|..+|++.+.....|. ...|...+.--...|+.+.+..+.+.+.+.+ |+..
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~ 575 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVN 575 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCC
T ss_pred HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCc
Confidence 34666777777777778888888888888887532222 3557777777777888888888888887643 3433
Q ss_pred HHHHHHHHHhh
Q 003273 601 HYACIVDLLGR 611 (834)
Q Consensus 601 ~~~~l~~~~~~ 611 (834)
....+++-|.-
T Consensus 576 ~~~~f~~ry~~ 586 (679)
T 4e6h_A 576 KLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHHhcC
Confidence 44444555543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=2.5e-11 Score=127.37 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCC----eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN----VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+......+...|++++|...|+++.+.... + ...|..+...+...|++++|++.+++..+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 3445566788889999999999988876433 2 3567778888888889888888888776410
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---CC----ccchHHH
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---RD----VATWTVM 430 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~----~~~~~~l 430 (834)
...+ ..+....++..+...|...|++++|...|++..... ++ ..++..+
T Consensus 74 ---~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 74 ---RTIG---------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129 (338)
T ss_dssp ---HHHT---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hccc---------------------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 0000 111224456677788888888888888887754211 11 2245556
Q ss_pred HHHHHhcCC
Q 003273 431 IGSYSQNGG 439 (834)
Q Consensus 431 i~~~~~~g~ 439 (834)
...|...|+
T Consensus 130 ~~~~~~~~~ 138 (338)
T 3ro2_A 130 GNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCc
Confidence 666666666
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=6.3e-11 Score=112.52 Aligned_cols=166 Identities=16% Similarity=0.083 Sum_probs=144.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++.+|..|...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 567889999999999999999999999887 34677899999999999999999999999988 4565 66777788
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 648 (834)
..+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+.+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999988753 2345778889999999999999999999887 2334 5778999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 003273 649 LGELAANRLLELESEK 664 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~ 664 (834)
+|+..++++++++|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999999965
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=3.6e-11 Score=138.09 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACI 605 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 605 (834)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45677777777777777777777777777 5675 66777777778888888888888877763 3443 6677778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
..+|.+.|++++|++.|++. ...| +...|..+...+...|+.++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888887766 3334 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003273 684 VARIRSLMKH 693 (834)
Q Consensus 684 a~~~~~~m~~ 693 (834)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=4.3e-10 Score=120.89 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=148.5
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCC---CCC----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPK---NRD----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
.....+...|++++|...|++.... .++ ..+|..+...|...|++++|+..+.+.++ +.+....+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~---- 179 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----IYKEHEAY---- 179 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHTCSTT----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHhCccc----
Confidence 3666778889999999998887543 122 35677888888888888888888888765 21111100
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYG 539 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~ 539 (834)
.+....+++.+...|...|++++|...|++..+ ++ ..+|..+...|.
T Consensus 180 ------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 180 ------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 002334567777888888888888888876651 22 136777788888
Q ss_pred HcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHhh
Q 003273 540 MHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISARAEHYACIVDLLGR 611 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~l~~~~~~ 611 (834)
..|++++|+..|++..+. +..|+ ..++..+...+...|++++|..+++...+.. +-+.....+..+..+|..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 888888888888887762 23244 5667777778888888888888887765321 111112234556666777
Q ss_pred cCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 612 ANR---LDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 612 ~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
.|+ +++|+.++++....|+ ...+..+...+...|+.+.|...+++++++
T Consensus 316 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 776 6667776666643332 223444444555555555555555555554
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=3e-10 Score=117.91 Aligned_cols=217 Identities=12% Similarity=0.097 Sum_probs=160.6
Q ss_pred HHHHHHHHhcCCCCC-CccchHHHHHHHHh-------cCCh-------hHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 408 DVARVMFDAIAPKNR-DVATWTVMIGSYSQ-------NGGA-------NDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 408 ~~A~~~f~~~~~~~~-~~~~~~~li~~~~~-------~g~~-------~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
++|..+|++.....| +...|..++..+.. .|+. ++|...|++.+. .+.|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~---~~~p------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS---TLLK------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT---TTTT-------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH---HhCc-------------
Confidence 566667776654334 55567666666543 3554 566666666553 0123
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--R-NVV-SWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~ 548 (834)
.+..++..++..+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|+.++|.
T Consensus 97 ----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 97 ----------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ----------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHH
Confidence 4556778888888899999999999998763 4 343 7999999999999999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHH-hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 549 WAFDQMRKEGLAPD-GVTFLVLLYACS-HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 549 ~l~~~m~~~g~~p~-~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
.+|++.++. .|+ ...|........ ..|++++|..+|+...+.. +.+...|..+++.+.+.|++++|..+|++.-
T Consensus 155 ~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 155 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999884 454 444544433322 3699999999999887642 2357788999999999999999999998872
Q ss_pred ----CCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 627 ----MEP--TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 627 ----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
..| ....|..++.....+|+.+.|..+++++++..|++..
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 244 3568999999999999999999999999999998653
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=4.7e-10 Score=110.65 Aligned_cols=178 Identities=10% Similarity=-0.086 Sum_probs=89.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK---Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLY 571 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 571 (834)
+..+..+...|.+.|++++|...|++.. . ++...|..+...+...|++++|+..|++.++ ..|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444444555555555555555443 1 3444444444455555555555555555554 3443 334444444
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARA-----EHYACIVDLLGRANRLDEAVELIEGM-PMEPT---PIIWVALLNGCR 642 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~ 642 (834)
++...|++++|...++...+...-.+.. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555444321111100 23444444455555555555555444 22333 234444444444
Q ss_pred hcCc---------------------------HHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 643 IHAN---------------------------VELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 643 ~~g~---------------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
..|+ ++.|...++++++++|+++.+...+..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4443 488888889999999988877777766543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=8.7e-10 Score=114.37 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=158.5
Q ss_pred cchhHHhHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYS-------RSGDI-------DTARVVFDNLKQ---R-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~-------k~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.++.++..++..+. +.|++ ++|..+|++... | +...|..++..+.+.|++++|..+|+++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45556666666554 35775 899999998763 3 456899999999999999999999999998
Q ss_pred cCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHHHHHHHHhC-CC-CCCH
Q 003273 557 EGLAPD-GV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG-RANRLDEAVELIEGM-PM-EPTP 631 (834)
Q Consensus 557 ~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~-~p~~ 631 (834)
+.|+ .. .|..+...+.+.|++++|..+|+...+. .+++...|...+.... ..|++++|.++|++. .. +.+.
T Consensus 128 --~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 128 --IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp --SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred --ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 6786 33 7999999999999999999999999742 2334555554444432 369999999999987 11 2357
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLEL---ESE-KDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..|..++..+...|+.+.|..+++++++. .|+ ....+..++..+...|++++|..+++.+.+..
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999996 553 56788999999999999999999999988754
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=1.6e-10 Score=124.16 Aligned_cols=231 Identities=8% Similarity=-0.054 Sum_probs=170.4
Q ss_pred HHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh
Q 003273 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509 (834)
Q Consensus 430 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 509 (834)
....+...|++++|+..|++....-. -.+|.. ....++..+...|..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~--------------------------------~~a~~~~~lg~~~~~ 155 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLI-FVKDRI--------------------------------EKAEFFFKMSESYYY 155 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHH--------------------------------HHHHHHHHHHHHHHH
Confidence 45567788999999999998876100 012111 234566778888888
Q ss_pred cCCHHHHHHHHhhcCC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCC-hhHHHHHHHHHH
Q 003273 510 SGDIDTARVVFDNLKQ-----RN-----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG----LAPD-GVTFLVLLYACS 574 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~ 574 (834)
.|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++.++.. -.+. ..++..+...|.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9998888888877651 22 3478888999999999999999999988631 1111 357888999999
Q ss_pred hcCCHHHHHHHHHHhHHh---cCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHh
Q 003273 575 HSGMVDQGLKYFDSMSKE---FGI-SARAEHYACIVDLLGRANRLDEAVELIEGMP----M--EPT-PIIWVALLNGCRI 643 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~ll~~~~~ 643 (834)
..|++++|..++++..+- .+. +.....+..+...|.+.|++++|.+.+++.- . .|. ...+..+...+..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999987652 123 2336678899999999999999999998762 1 122 2235666667888
Q ss_pred cCc---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 644 HAN---VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 644 ~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+ .+.|...+++. ...|.....+..|+.+|...|++++|...+++..+.
T Consensus 316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888 66677776665 334445568889999999999999999999988753
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=2.6e-10 Score=125.90 Aligned_cols=177 Identities=10% Similarity=-0.012 Sum_probs=157.1
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 513 IDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG-DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 513 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
+++|...++... ..+...|..+...|...|++ ++|+..|++.++ ..|+ ...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666554 34678899999999999999 999999999999 5676 7889999999999999999999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CcHH
Q 003273 588 SMSKEFGISARAEHYACIVDLLGRA---------NRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH--------ANVE 648 (834)
Q Consensus 588 ~m~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 648 (834)
... .+.|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 987 5678888999999999999 9999999999987 2334 578999999999988 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELES---EKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+|+..++++++++| +++.+|..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999998765
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=125.85 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=118.6
Q ss_pred CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC--------CC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 003273 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK--------NR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457 (834)
Q Consensus 387 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~ 457 (834)
.+.+..++..+...|...|++++|...|+++... .+ ....|..+...|...|++++|+..|++++. .
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~-- 98 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA--I-- 98 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--H--
Confidence 3445677888888999999999999988887641 22 345677788888888888888888887765 1
Q ss_pred cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----
Q 003273 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------R---- 526 (834)
Q Consensus 458 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~---- 526 (834)
. ..... +..+....++..+...|...|++++|...|+++.+ +
T Consensus 99 ~--------------------------~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 99 R--------------------------EKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp H--------------------------HHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred H--------------------------HHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 0 00000 00113445567777788888888888887776641 1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE------GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
....|..+...|...|++++|+..|+++.+. +..|+ ..++..+..++...|++++|..+++.+.+
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345677777778888888888888887763 22343 45577777778888888888888877764
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=3e-11 Score=125.47 Aligned_cols=240 Identities=12% Similarity=0.125 Sum_probs=164.1
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
..+|..+...|...|++++|+.+|+++.+ . .. ........ ....++..+
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~--~~--------------------------~~~~~~~~-~~~~~~~~l 75 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE--D--LE--------------------------KTSGHDHP-DVATMLNIL 75 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--HH--------------------------HHHCSSSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H--HH--------------------------HHcCCCCH-HHHHHHHHH
Confidence 45677777888888888888888887765 1 00 00000011 445667788
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-hhH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQ-------R----NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE------GLAPD-GVT 565 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t 565 (834)
...|...|++++|...|++... + ...+|..+...|...|++++|+..|+++.+. +..|+ ...
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8889999999999988887751 1 2457888899999999999999999998874 23344 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEF-----GISA-RAEHYACIVDLLGRANRLDEAVELIEGMP----------MEP 629 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 629 (834)
+..+...+...|++++|..+++.+.+.. +..| ....+..+..+|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 8888889999999999999999887531 1122 35678889999999999999999998762 111
Q ss_pred C-HHHHHH------HHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 630 T-PIIWVA------LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~-~~~~~~------ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
. ...|.. +...+...+....+...++++....|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 112222 2222334445555666777777788888899999999999999999999999988653
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=4.5e-10 Score=106.29 Aligned_cols=161 Identities=12% Similarity=0.014 Sum_probs=97.4
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYAC 573 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 573 (834)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .|+ ...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 4445556666666666666666666552 24445555556666666666666666666552 332 44455555555
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 003273 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 653 (834)
...|++++|.++++.+.+. .+.+...|..+...+...|+.+.|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555555555544421 123455666666666677777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 654 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++++++..|+++.++..++.+|...|++++|.+.++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777766543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=1.2e-09 Score=103.34 Aligned_cols=167 Identities=15% Similarity=0.004 Sum_probs=128.9
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 003273 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGY 538 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 538 (834)
..+..+...+...|+++.|...+..+.+... .+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA--FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455667778889999999999988876543 567888999999999999999999999876 34677899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
...|++++|...|+++.+. .| +...+..+..++...|++++|..+++.+.+. .|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~-------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP-------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT--------------------
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc--------------------
Confidence 9999999999999999984 44 4677788888888888999988888877643 11
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 618 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.+...|..+...+...|+.+.|...+++++++.|+++.
T Consensus 142 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 -----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred -----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 23445555555666666666666666666666665543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=9.4e-10 Score=108.47 Aligned_cols=153 Identities=14% Similarity=0.037 Sum_probs=132.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 003273 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYAC 604 (834)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 604 (834)
.|+..|......+...|++++|+..|++.++....++...+..+..++...|++++|+..|+...+ ..| +...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 466788889999999999999999999999964336777888899999999999999999999874 345 4678899
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TP-------IIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSN 673 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 673 (834)
+..+|.+.|++++|++.+++. ...| +. ..|..+...+...|+.+.|+..++++++++|+ ++.++..++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999887 2233 34 45788888899999999999999999999999 8899999999
Q ss_pred HHHhcCCc
Q 003273 674 IYANAGRW 681 (834)
Q Consensus 674 ~~~~~g~~ 681 (834)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988887
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=1e-08 Score=109.52 Aligned_cols=267 Identities=13% Similarity=0.028 Sum_probs=179.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCc------cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDV------ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
..+...+...|++++|...+++.....|+. ..++.+...|...|++++|...+++... +.|+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~------- 86 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ----MARQH------- 86 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHT-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----HHHhc-------
Confidence 344456667888888888877754322221 1345566667777888888887777665 11110
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ----------R-NVVSWTSLMTG 537 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~ 537 (834)
+...........+...|...|++++|...+++... | ....+..+...
T Consensus 87 ----------------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 87 ----------------------DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 00001123345667778888888888888876651 1 12356667778
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC--C--ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLA--P--DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA-----CIVDL 608 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~ 608 (834)
+...|++++|...+++....... | ...++..+...+...|++++|..+++.......-......+. ..+..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 88999999999999998874322 1 134577777888899999999999998764322111111121 23455
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------CchHHHHHHHHH
Q 003273 609 LGRANRLDEAVELIEGMP-MEPT-----PIIWVALLNGCRIHANVELGELAANRLLELESEK------DGSYTLLSNIYA 676 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~ 676 (834)
+...|++++|...+++.. ..|. ...+..+...+...|+.++|...++++++..+.. ...+..++.+|.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 778999999999998873 1221 2256677778889999999999999988764431 136778899999
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|...++.....
T Consensus 305 ~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=9e-09 Score=110.22 Aligned_cols=233 Identities=9% Similarity=0.027 Sum_probs=140.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCC---CC----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKN---RD----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l 467 (834)
......+...|++++|...|++..... ++ ...+..+...|...|++++|+..+.+..+ +.+....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~----~~~~~~~~--- 177 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD----IYQNHPLY--- 177 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHTSTTC---
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH----HHHhCCCc---
Confidence 344556677888888888888765321 22 34566777778888888888888777765 11111000
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHH
Q 003273 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGY 538 (834)
Q Consensus 468 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 538 (834)
.+....+++.+...|...|++++|...|++..+ ++ ..+++.+...|
T Consensus 178 -------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 178 -------------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 002234556777788888888888887776641 22 23566777777
Q ss_pred HHcCChHHHHHHHHHHHHcC---CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhh
Q 003273 539 GMHGLGDKAHWAFDQMRKEG---LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI---SARAEHYACIVDLLGR 611 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g---~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~ 611 (834)
...|++++|+..|++..+.. ..|+ ..++..+...+...|++++|..+++...+...- +.....+..+...|..
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 78888888888887776510 1232 556777777777888888888887776543221 1123345555566666
Q ss_pred cCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 612 ANR---LDEAVELIEGMPMEPTP-IIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 612 ~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
.|+ +++|+..+++....|+. ..+..+...+...|+.+.|...++++++
T Consensus 313 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666 66666666665422222 2334444445555555555555555544
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=7.9e-10 Score=126.99 Aligned_cols=164 Identities=12% Similarity=0.159 Sum_probs=145.1
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..++.|...|.+.|++++|.+.|++.. .| +...|+.+...|.+.|++++|+..|++.++ +.|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 567788999999999999999999999887 34 577999999999999999999999999999 6787 78899999
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANV 647 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 647 (834)
.++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...|+ ...|..|...+...|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999874 345 4778999999999999999999999987 34454 77899999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 003273 648 ELGELAANRLLELESE 663 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~ 663 (834)
++|++.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999887553
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=5.8e-09 Score=111.71 Aligned_cols=305 Identities=10% Similarity=-0.021 Sum_probs=205.6
Q ss_pred CCCChhhHHHHHHHHH--HhCCChHHHHHHHHhcCCC------CCCccchHHHHHHH--HhcCChhHHH---------HH
Q 003273 386 SHPDDLMVINALIDMY--AKCKSVDVARVMFDAIAPK------NRDVATWTVMIGSY--SQNGGANDAL---------AL 446 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~~------~~~~~~~~~li~~~--~~~g~~~~A~---------~l 446 (834)
...|+..+.+.|-+-| .+.+++++|..+++++... ..++..|-.++..- ...+....+. +.
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3456677777787777 8899999999999876421 12333333333221 1112222222 55
Q ss_pred HHhhcccCCCCcCCc-c---cHHHHHHHHhhhhhHHHHHHHHHHHHHhCC----CccchhHHhHHHHHHHhcCCHHHHHH
Q 003273 447 FPQMFQQDKLVKPNA-F---TLSCALMACARLAALRFGRQIHAYVLRNQY----EMLIPFVANCLIDMYSRSGDIDTARV 518 (834)
Q Consensus 447 ~~~m~~~~~g~~p~~-~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (834)
++.+.. .....+. . .+...-..+...|+++.|...+..+.+... .+....++..+...|...|++++|..
T Consensus 85 l~~i~~--~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 85 LETIET--PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHG--GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhc--cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 555432 1111111 1 111222345678999999999999886421 11345677889999999999999998
Q ss_pred HHhhcCC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 003273 519 VFDNLKQ-----RN-----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 519 ~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+++..+ ++ ..+++.+...|...|++++|++.|++..+. +..+. ..++..+..++...|++++|.
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 8887651 22 347888999999999999999999998763 11111 456888889999999999999
Q ss_pred HHHHHhHHhc---CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCc---HHHH
Q 003273 584 KYFDSMSKEF---GISARAEHYACIVDLLGRANRLDEAVELIEGM----PM--EPT-PIIWVALLNGCRIHAN---VELG 650 (834)
Q Consensus 584 ~~~~~m~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a 650 (834)
.+|++..+-. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ .+.|
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999886511 22233667888999999999999999999876 11 222 2345555555777777 6666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...+++. ...|.....+..++.+|...|++++|...+++..+
T Consensus 323 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 323 LSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666652 22344456788999999999999999999988754
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=3.1e-08 Score=105.77 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=171.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCee----eHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----hHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV----TWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNV----VTL 353 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~ 353 (834)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999998877654322221 456666778888999999999888765311 1122 224
Q ss_pred HHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCC-CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC------ccc
Q 003273 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD------VAT 426 (834)
Q Consensus 354 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~------~~~ 426 (834)
..+...+...|+++.|...+...+.......... +....++..+...|...|++++|...+++.....+. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4555667788999999988888877543221111 223456677888889999999999888875422221 234
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHH
Q 003273 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506 (834)
Q Consensus 427 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 506 (834)
|..+...+...|++++|...+++... ..-.++.... .........+..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~--~~~~~~~~~~------------------------------~~~~~~~~~~~~ 224 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLEN--LLGNGKYHSD------------------------------WISNANKVRVIY 224 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCCCHH------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HHhccCcchh------------------------------HHHHHHHHHHHH
Confidence 56666777778888888888877754 1111111000 000001133455
Q ss_pred HHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHH
Q 003273 507 YSRSGDIDTARVVFDNLKQRN-------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPDG-VTFLVLLYACS 574 (834)
Q Consensus 507 y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~ 574 (834)
+...|++++|...+++...++ ...+..+...+...|++++|...+++.... |..++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 778889999998888877432 124556667777888888888888776552 111122 24445555666
Q ss_pred hcCCHHHHHHHHHHhH
Q 003273 575 HSGMVDQGLKYFDSMS 590 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~ 590 (834)
..|+.++|...++...
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 6777777777666554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=3.7e-09 Score=107.65 Aligned_cols=219 Identities=11% Similarity=0.112 Sum_probs=151.4
Q ss_pred hhhHHHHHHHHHHHHH-------hCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHH
Q 003273 474 LAALRFGRQIHAYVLR-------NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------R----NVVSWTSLM 535 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li 535 (834)
.|+++.|..++...++ ...+ ....++..+...|...|++++|...|+++.+ + ...+|..+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555555443 2222 5677888899999999999999999987751 1 245788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-ChHHH
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKE------GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-----GISA-RAEHY 602 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~ 602 (834)
..|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. .-.| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998874 11344 6678888889999999999999999887531 1122 35678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCc------HHHHHHHHHHHHhcCCCCC
Q 003273 603 ACIVDLLGRANRLDEAVELIEGMP----------MEPT-PIIWVALLNGCRIHAN------VELGELAANRLLELESEKD 665 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~ 665 (834)
..+..+|.+.|++++|.+.++++. ..+. ...|..+.......+. ...+...++.+....|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 889999999999999999987651 1222 2344444433333222 2333333333333445566
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 666 GSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.++..++.+|...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999998765
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.8e-08 Score=101.47 Aligned_cols=204 Identities=9% Similarity=-0.019 Sum_probs=130.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hh
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD----GV 564 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ 564 (834)
.++..+-.+...+.+.|++++|...|+++. .|+ ...|..+..+|.+.|++++|+..|++.++. .|+ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHH
Confidence 445555566666677777777777777665 232 345666666677777777777777777663 332 33
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003273 565 TFLVLLYACSH--------SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636 (834)
Q Consensus 565 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 636 (834)
.+..+..++.. .|++++|...|+.+.+.+.-.+ .....+..+....+.+ ...+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 45555556666 6677777777766654321111 1111111111000000 112456
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCchhHHHHHHHHHhcCCccCCcee
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANA----------GRWKDVARIRSLMKHTGVKKRPGCS 703 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 703 (834)
+...+...|+++.|+..++++++..|+++ .++..++.+|... |++++|...++.+.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 77778999999999999999999999854 4789999999977 899999999999876421
Q ss_pred EEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 003273 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740 (834)
Q Consensus 704 ~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 740 (834)
.+|...+....+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=8.6e-09 Score=104.91 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=118.4
Q ss_pred cCCCchHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCC-------CCC-CcchHHHHH
Q 003273 147 ELPSSRCGSSVHAVICSS-------GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP-------GIC-DIVSWNTIV 211 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-------~~~-~~~~~~~li 211 (834)
..|+++.|..++++.++. ..+....++..+...|...|++++|...|++.... ..| ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 11234567888999999999999999998876532 112 566799999
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 003273 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291 (834)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~ 291 (834)
..|...|++++|+..|++.... ..+....-......++..+...|.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~----------------------------------~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEI----------------------------------REKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH----------------------------------HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH----------------------------------HHHHcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999887642 000000000123567888999999
Q ss_pred cCCCHHHHHHHHHHhHhc------CCCC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 292 RIGSFEDAFALFKKMRQE------NVKL-NVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
..|++++|...|++.... +-.| ...++..+...|...|++++|+..|++..+
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999988765 1122 456788889999999999999999999876
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=1.9e-08 Score=103.26 Aligned_cols=164 Identities=9% Similarity=-0.061 Sum_probs=83.7
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-----
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPD----- 562 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 562 (834)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 4455566666666666666666655541 11 23555666666664 666666666666655 2221
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH--
Q 003273 563 --GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA-----EHYACIVDLLGRANRLDEAVELIEGM-PMEPTPI-- 632 (834)
Q Consensus 563 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 632 (834)
..++..+...+...|++++|+.+|+...+...-.+.. ..|..++.++...|++++|...+++. ...|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2345555666666666666666666655321111111 13455555666666666666666655 2223211
Q ss_pred ----HHHHHHHHHH--hcCcHHHHHHHHHHHHhcCCC
Q 003273 633 ----IWVALLNGCR--IHANVELGELAANRLLELESE 663 (834)
Q Consensus 633 ----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 663 (834)
.+..++.++. ..++++.|...++++.+++|.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2233334443 234455566665555555553
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=1.1e-08 Score=105.10 Aligned_cols=198 Identities=7% Similarity=-0.014 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYGMHGLGDK 546 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~ 546 (834)
+++.|...+..+ ...|...|++++|...|.+... .+ ..+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 467666666443 4567889999999999887752 12 4589999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCC
Q 003273 547 AHWAFDQMRKEGLAPD-------GVTFLVLLYACSHS-GMVDQGLKYFDSMSKEFGISAR----AEHYACIVDLLGRANR 614 (834)
Q Consensus 547 A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~ 614 (834)
|+..|++.++. .|+ ..++..+..+|... |++++|+..|++..+-..-..+ ...+..+...|.+.|+
T Consensus 96 A~~~~~~Al~l--~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 96 AVDSLENAIQI--FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 99999998873 221 35788889999996 9999999999988753211111 4568889999999999
Q ss_pred HHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hc
Q 003273 615 LDEAVELIEGM-PMEP---TP-----IIWVALLNGCRIHANVELGELAANRLLELESEKDGS-----YTLLSNIYA--NA 678 (834)
Q Consensus 615 ~~~A~~~~~~~-~~~p---~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 678 (834)
+++|++.+++. ...| .. ..|..+...+...|+.+.|+..++++++++|+.... +..++..|. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999999886 2222 21 156777778889999999999999999999986543 344566664 45
Q ss_pred CCchhHHHHHHHH
Q 003273 679 GRWKDVARIRSLM 691 (834)
Q Consensus 679 g~~~~a~~~~~~m 691 (834)
+++++|...++.+
T Consensus 254 ~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 254 EQLSEHCKEFDNF 266 (292)
T ss_dssp TTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccC
Confidence 6788888777554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=2.5e-08 Score=100.48 Aligned_cols=202 Identities=11% Similarity=-0.037 Sum_probs=143.1
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc-cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----hhHHHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEM-LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----VVSWTS 533 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----~~~~~~ 533 (834)
...+......+...|+++.|...+..+++..... ..+..+..+...|.+.|++++|...|++.. .|+ ...|..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3455566677888999999999999998865421 126778889999999999999999999887 232 346777
Q ss_pred HHHHHHH--------cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 534 LMTGYGM--------HGLGDKAHWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 534 li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
+..++.. .|++++|+..|++.++ ..|+. .....+. .+..+... -...+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 7888888 9999999999999998 45653 2222211 11111110 0122556
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcCCCCCc---
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIH----------ANVELGELAANRLLELESEKDG--- 666 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~--- 666 (834)
+...|.+.|++++|+..++++ ...|+ ...|..+..++... |+.++|+..++++++..|+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 778888888888888888776 12232 34666677777655 8899999999999999998863
Q ss_pred hHHHHHHHHHhcCCchh
Q 003273 667 SYTLLSNIYANAGRWKD 683 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~ 683 (834)
++..+..++...|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45556666665555544
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=2.1e-09 Score=97.84 Aligned_cols=137 Identities=10% Similarity=0.025 Sum_probs=86.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 616 (834)
...|++++|+..+++... ..|+ ...+..+...|...|++++|++.|++..+ +.| +...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchH
Confidence 344555555555555444 3333 34444555556666666666666665553 223 3455556666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 617 EAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELA-ANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 617 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
+|+..|++. ...| +...|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666554 2234 466788888888888887665554 689999999999999999988888775
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=4e-08 Score=100.42 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=138.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 003273 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593 (834)
Q Consensus 515 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (834)
.....+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 334444444444556677788888999999999999999998 5776 67788888999999999999999998763
Q ss_pred CCCCChHHHHHHH-HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--CchH
Q 003273 594 GISARAEHYACIV-DLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEK--DGSY 668 (834)
Q Consensus 594 ~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 668 (834)
..|+........ -.+.+.|+.++|.+.+++. ... .+...+..+...+...|+.++|...++++++.+|++ ..++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 355544333333 3366778888888888776 223 457789999999999999999999999999999988 7899
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Q 003273 669 TLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 669 ~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
..|+.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887654
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=9.5e-08 Score=93.69 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=118.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG----VT 565 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 565 (834)
++..+..+...+.+.|++++|...|+++. .|+ ...+..+..+|.+.|++++|+..|++.++ ..|+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 34455566777888888888888888776 243 24677777888888888888888888887 44542 23
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 566 FLVLLYACSH------------------SGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 566 ~~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
+..+..++.. .|++++|...|+.+.+. .|+. ..+.+... .+.+.+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH-------
Confidence 4444444443 34555555555555432 2221 11111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 003273 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 627 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 696 (834)
......+...+...|+.+.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112445567889999999999999999999876 5789999999999999999999999887654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=9.3e-09 Score=118.80 Aligned_cols=147 Identities=10% Similarity=-0.094 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACI 605 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 605 (834)
...|..+...|.+.|++++|+..|+++++ ..|+ ...+..+..++...|++++|...|++..+ +.| +...|..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 34455555555555555555555555555 3343 44455555555555555555555555542 122 23445555
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
..+|.+.|++++ ++.|++. ...| +...|..+..++...|+.++|+..++++++++|++..++..++.+|...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 5555444 1122 344555555555555555555555555555555555555555555544443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=6.6e-08 Score=85.47 Aligned_cols=128 Identities=17% Similarity=0.238 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
.|..+...+...|++++|+.+|+++.+. .| +...+..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------ 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------ 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C------------
Confidence 4556666666677777777777776663 23 3455555566666666666666666655432 1
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+.+...|..+...+...|+.+.|...++++++..|++...+..++.+|...|++++|...+
T Consensus 66 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 66 -------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 1234455555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHh
Q 003273 689 SLMKH 693 (834)
Q Consensus 689 ~~m~~ 693 (834)
+.+.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66554
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=9.6e-08 Score=84.38 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=92.9
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACS 574 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 574 (834)
.+..+...|...|++++|..+|+++. ..+...|..+...+...|++++|...|+++.+. .| +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 56788899999999999999999876 346778999999999999999999999999984 45 4667888888889
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
..|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.+++
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999887643 122344444555555555555555555443
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=3.4e-07 Score=91.93 Aligned_cols=174 Identities=15% Similarity=0.026 Sum_probs=127.4
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 516 ARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 516 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666655 34555666777888888999999999998877543234 56677778889999999999999998864
Q ss_pred hcCCCC-----ChHHHHHHHHH----HhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 003273 592 EFGISA-----RAEHYACIVDL----LGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHANVELGELAANRLLEL- 660 (834)
Q Consensus 592 ~~~~~p-----~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 660 (834)
..| +..+...+..+ ....+++.+|..+|+++. ..|+..+-..|++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 355 24444445444 223348999999999883 2355333344555788889999999999988876
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 661 ---------ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 661 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+|+|+.++..++.++...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888888888888887 888999988764
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.4e-07 Score=108.95 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=131.0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.+...+..+...|.+.|++++|...|+++. ..+...|..+...|.+.|++++|+..|++.++ ..|+ ...+..+.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 556667778888899999999999998887 34677899999999999999999999999998 5775 67788899
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCc-
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHAN- 646 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~- 646 (834)
.++...|++++ .+.|+...+ +.| +...|..+..+|.+.|++++|++.++++ ...|+ ...|..+..++...++
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999 999998874 344 4678889999999999999999999998 45566 4577777777666554
Q ss_pred ----HHHHHHHHHHHHhcCCCCCchH
Q 003273 647 ----VELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 647 ----~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
.+...++.+.+.++.++++..+
T Consensus 585 ~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp --CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred CCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 3455556666666666555443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=3.9e-08 Score=92.21 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=92.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-Hhhc
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL-LGRA 612 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~ 612 (834)
...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++.+.+. .|+...+..+... +.+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555554444 2343 344444444555555555555555544321 2222221111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchhHHHHH
Q 003273 613 NRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEK--DGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+...+|.+.+++. ...| +...|..+...+...|+.++|+..++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555544 2234 57788889999999999999999999999999875 558999999999999999999998
Q ss_pred HHHHh
Q 003273 689 SLMKH 693 (834)
Q Consensus 689 ~~m~~ 693 (834)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=1.4e-07 Score=106.92 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=122.7
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 510 SGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888762 3567889999999999999999999999998 5675 77888899999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhc
Q 003273 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH---ANVELGELAANRLLEL 660 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 660 (834)
+++..+. -+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9988753 2334678889999999999999999999887 2233 577888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 003273 661 ESEKDGSYTLLS 672 (834)
Q Consensus 661 ~p~~~~~~~~l~ 672 (834)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=1.4e-07 Score=91.24 Aligned_cols=154 Identities=10% Similarity=0.026 Sum_probs=114.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC-h
Q 003273 504 IDMYSRSGDIDTARVVFDNLK--QR-NVVSWTS----------------LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-G 563 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 563 (834)
...+.+.|++++|...|++.. .| +...|.. +...|.+.|++++|+..|++.++ ..|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 344556677777777776665 22 2334555 88889999999999999999998 5775 7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCH--HHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANR--LDEAVELIEGMPMEPTP--IIWVALL 638 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~ll 638 (834)
..+..+..++...|++++|...|++..+ +.| +...+..+..+|...|. .+++...++... .|+. ..|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 7888999999999999999999999875 345 46788888888876654 445666676664 3443 3455556
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 639 NGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
.++...|+.++|+..+++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6677789999999999999999996
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=2.5e-08 Score=90.71 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA 645 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 645 (834)
|...+...|++++|+..+.... ...|+ ...+..+..+|.+.|++++|++.|++. ...| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455667789999999998775 34454 445667899999999999999999987 3344 5789999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH-HHHHHh
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI-RSLMKH 693 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 693 (834)
+.+.|+..++++++++|+++.++..++.+|...|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987775 466655
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=5.3e-07 Score=87.32 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=134.0
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHhH
Q 003273 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG----MVDQGLKYFDSMS 590 (834)
Q Consensus 516 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 590 (834)
|.+.|++.. ..+...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444443 3567778888888888888889999998888754 45667777777777 6 8899999998886
Q ss_pred HhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh----cCcHHHHHHHHHHHH
Q 003273 591 KEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPME-PT---PIIWVALLNGCRI----HANVELGELAANRLL 658 (834)
Q Consensus 591 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 658 (834)
+. -+...+..|..+|.. .+++++|++++++.-.. |. +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 256677788888877 78999999999887433 32 6788888888877 789999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----CchhHHHHHHHHHhcCC
Q 003273 659 ELESEKDGSYTLLSNIYANA-G-----RWKDVARIRSLMKHTGV 696 (834)
Q Consensus 659 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 696 (834)
++ |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66788999999999764 3 89999999999887763
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=1.2e-07 Score=107.41 Aligned_cols=150 Identities=17% Similarity=0.065 Sum_probs=116.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 618 (834)
.|++++|+..|++..+ ..|+ ...+..+...+...|++++|.+.|++..+ +.| +...+..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4788999999999988 5676 77889999999999999999999999874 455 477899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 003273 619 VELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA---GRWKDVARIRSLMKH 693 (834)
Q Consensus 619 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 693 (834)
.+.+++. ...| +...|..+...+...|+.++|...++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999887 2233 5778999999999999999999999999999999999999999999999 999999999988876
Q ss_pred cC
Q 003273 694 TG 695 (834)
Q Consensus 694 ~~ 695 (834)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=1.2e-06 Score=88.09 Aligned_cols=242 Identities=11% Similarity=0.012 Sum_probs=159.1
Q ss_pred HHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHH
Q 003273 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 401 y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 480 (834)
..-.|.+..+..-...+....++ ..-.-+..+|...|++... ..-.|....+ .++..+...+ +
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~-~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~-~~la~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDN-TLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVL-DLYVQFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCH-HHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHH-HHHHHHHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcCccchH-HHHHHHHHHHHHcCCCccC-----------CCCCHHHHHH-HHHHHHhccc----H
Confidence 34467777777755555432232 2222344677777776531 1112221111 2222222222 4
Q ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
...++..+..+. .+......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 86 ~~~l~~l~~~~~--~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 86 IEELENLLKDKQ--NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CHHHHHTTTTSC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554442 4445556888999999999999999998743 245577778889999999999999999998
Q ss_pred HcCCCC-----ChhHHHHHHHH--HHh--cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 556 KEGLAP-----DGVTFLVLLYA--CSH--SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 556 ~~g~~p-----~~~t~~~ll~a--~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
+ ..| +..+...|..+ ... .+++++|..+|+++.++ .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 677 35666666666 333 34899999999998743 3553333444458999999999999987642
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 627 M-----------EP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 627 ~-----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
. .| |+.+.-.++......|+ .|.+.++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 13 45666666666666777 78999999999999987553
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=1.4e-07 Score=82.62 Aligned_cols=114 Identities=9% Similarity=0.032 Sum_probs=73.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 003273 559 LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWV 635 (834)
Q Consensus 559 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 635 (834)
+.|+ ...+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. ... .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4454 445555666666666666666666665532 1223555666666666666666666666654 222 3456777
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
.+..++...|++++|+..++++++++|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777778888888888888888888888887777766654
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=3.1e-07 Score=88.71 Aligned_cols=181 Identities=13% Similarity=0.042 Sum_probs=122.3
Q ss_pred HHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh
Q 003273 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509 (834)
Q Consensus 430 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 509 (834)
....+...|++++|+..|++.++ ..|+......... . ..... ..+.+.+.+...|.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~-~-----------------~~~~~-~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTN-V-----------------DKNSE-ISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHH-S-----------------CTTSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhh-h-----------------cchhh-hhHHHHHHHHHHHHH
Confidence 34456677888888888887766 4454322110000 0 00001 223344558889999
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC--HHHHH
Q 003273 510 SGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM--VDQGL 583 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 583 (834)
.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999887 34678899999999999999999999999999 6786 7778888888766654 34455
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALL 638 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 638 (834)
..++... ...|....+..+...+...|++++|...|++. ...|+......|.
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555442 23333334445666777889999999999987 5668865554443
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=2.2e-07 Score=81.31 Aligned_cols=101 Identities=9% Similarity=0.015 Sum_probs=90.3
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 594 GISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 594 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
-+.|+ .+.+...+..|.+.|++++|++.|++. ... .+...|..+..++...|+.+.|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35565 456788899999999999999999987 333 457899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhc
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.+|...|++++|.+.+++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=5.7e-07 Score=84.15 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTG-YGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...|.+.|++++|...|++.. .|+...+..+... +...+...+|+..|++.++ ..|+ ...+..+.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la 115 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELA 115 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 334445555666666666666666666655 2322222211111 1121222235566666655 3454 45555556
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISAR---AEHYACIVDLLGRANRLDEAVELIE 623 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (834)
.++...|++++|...|+.+.+ ..|+ ...+..+..+|...|+.++|...|+
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 666666666666666665542 2332 3345555555555555555555554
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=1.7e-07 Score=84.69 Aligned_cols=102 Identities=8% Similarity=-0.068 Sum_probs=86.7
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 594 GISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 594 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
.+.|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44453 456777777888888888888888876 2234 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988753
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=9e-07 Score=86.63 Aligned_cols=182 Identities=13% Similarity=-0.029 Sum_probs=130.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-ccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChh----HHHHHHH
Q 003273 464 LSCALMACARLAALRFGRQIHAYVLRNQYE-MLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVV----SWTSLMT 536 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~----~~~~li~ 536 (834)
+......+...|+++.|...+..+++.... +.....+..+...|.+.|++++|...|++.. .|+.. .|..+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 444556788899999999999999986543 1234677888999999999999999999986 34322 4555555
Q ss_pred HHHH------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 003273 537 GYGM------------------HGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597 (834)
Q Consensus 537 ~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 597 (834)
++.. .|+.++|+..|+++++ ..|+.. ........ ..+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----------~~~~~~~~------- 147 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----------VFLKDRLA------- 147 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----------HHHHHHHH-------
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----------HHHHHHHH-------
Confidence 5554 5789999999999998 567743 32221110 00111111
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++...|+.+.|+..++++....|++..
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999887 22243 246888888999999999999999999999987654
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=6.4e-07 Score=92.50 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=151.3
Q ss_pred cCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHH
Q 003273 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 516 (834)
.|++++|.+++++..+. .+.. + +...++++.+...+ +.....|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~----~~~~--~------~~~~~~~~~A~~~~----------------~~a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKY----LKTS--F------MKWKPDYDSAASEY----------------AKAAVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHH----HCCC--S------SSCSCCHHHHHHHH----------------HHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHH----cccc--c------cCCCCCHHHHHHHH----------------HHHHHHHHHcCCHHHH
Confidence 46777888888877651 1111 0 00024455444444 4445678888999999
Q ss_pred HHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHhcCCHHHH
Q 003273 517 RVVFDNLKQ-----RN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL---APD--GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 517 ~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a 582 (834)
...|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 888887651 12 34788888999999999999999998876311 122 4567888888988 999999
Q ss_pred HHHHHHhHHhcCCC---C-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHH
Q 003273 583 LKYFDSMSKEFGIS---A-RAEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 583 ~~~~~~m~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a 650 (834)
+.+|++..+-+.-. + ....+..+..+|.+.|++++|++.+++.- ..++ ...|..+...+...|+.+.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876432111 1 14678889999999999999999998762 1122 22566666677788999999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCchhHHH
Q 003273 651 ELAANRLLELESEKDGS-----YTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 686 (834)
...+++++ +.|+.... ...++.+| ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99975533 34455555 5676665555
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=8.9e-07 Score=90.31 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=85.7
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSL-MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...|.+.|++++|...|+++. .|+...+... ...+.+.++.++|+..|++..+ ..|+ ...+..+.
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la 226 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLA 226 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHH
Confidence 445566677777778888888888888776 3444332222 2235566777778888888877 4565 66777777
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.++...|++++|...|..+.+...-..+...+..++.+|...|+.++|...+++
T Consensus 227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 788888888888888887775421122255677777777777777777666654
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=1.5e-07 Score=85.17 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=85.1
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 594 GISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 594 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
.+.| +...+..+...+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3444 3556667788888888888888888876 223 467789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhc
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.+|...|++++|...++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=5.2e-06 Score=91.28 Aligned_cols=359 Identities=9% Similarity=0.003 Sum_probs=183.8
Q ss_pred CCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCC-CchHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHh----CCCh
Q 003273 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP-SSRCGSSVHAVICSS-GFD-SNVFVCNALMAMYAR----CDTL 186 (834)
Q Consensus 114 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~~~~----~g~~ 186 (834)
++++.+..+|++.... .|+...|..-++-..+.+ ..+....+|+.++.. |.. .+..+|...+..+.. .|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6677777777776652 356555555554443333 223455666666554 432 345666666665432 3456
Q ss_pred hHHHHHHHhcCCCCCCCc-chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcH
Q 003273 187 SYARQLFDEMFQPGICDI-VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265 (834)
Q Consensus 187 ~~A~~~~~~m~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~ 265 (834)
+.++++|++.......+. ..|......- .......+..+..+. ...+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~-------------------------------~~~y 153 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDT-------------------------------LPIF 153 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH-------------------------------HHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHH-------------------------------hHHH
Confidence 667777776655311111 1122221111 111111222222111 1122
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHcCC--C-----HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHH
Q 003273 266 EEAKKVFERMK----VKDVVSWNAMVTGYSRIG--S-----FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334 (834)
Q Consensus 266 ~~A~~~~~~~~----~~d~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 334 (834)
..|+.+++... ..+...|...+..-...+ - .+.+..+|+++....+. +...|-..+.-+.+.|+.++|
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 33333333222 124456776666543321 1 34577899998876544 677888888888999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcC---CCC---CChhhHHHHHHHHHHhCCChH
Q 003273 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD---GSH---PDDLMVINALIDMYAKCKSVD 408 (834)
Q Consensus 335 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~---~~~~~~~~~li~~y~~~g~~~ 408 (834)
.++|++.... |....+... ++..... .+++..+........ ++. .....+|...+..+.+.+.++
T Consensus 233 r~i~erAi~~---P~~~~l~~~---y~~~~e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 233 KKVVERGIEM---SDGMFLSLY---YGLVMDE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHH---CCSSHHHHH---HHHHTTC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhC---CCcHHHHHH---HHhhcch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 9999999987 555443222 2211111 122333222210000 000 001123333334433344444
Q ss_pred HHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhh-hHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA-ALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~ 487 (834)
.|+.+|+... .|. .++ ..|......-...+ +.+.|+.++...
T Consensus 304 ~AR~i~~~A~--~~~-~~~----------------------------------~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 304 LFRKLFIELG--NEG-VGP----------------------------------HVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HHHHHHHHHT--TSC-CCH----------------------------------HHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHhh--CCC-CCh----------------------------------HHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4444444441 111 011 11111000001112 456666666666
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.+... .++..+...++...+.|+.+.|+.+|+++. .....|...+.--..+|+.+.+..+++++..
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55432 345556667788888999999999999984 3567788888777788888888888888765
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=2.9e-06 Score=86.15 Aligned_cols=214 Identities=12% Similarity=0.130 Sum_probs=114.9
Q ss_pred cCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC--CHH
Q 003273 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG--DID 514 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~ 514 (834)
....++|+.++..++. +.|+..|. ++.-...+...| +++
T Consensus 46 ~e~s~~aL~~t~~~L~----~nP~~~ta-----------------------------------Wn~R~~~L~~l~~~~~~ 86 (306)
T 3dra_A 46 EEYSERALHITELGIN----ELASHYTI-----------------------------------WIYRFNILKNLPNRNLY 86 (306)
T ss_dssp TCCSHHHHHHHHHHHH----HCTTCHHH-----------------------------------HHHHHHHHHTCTTSCHH
T ss_pred CCCCHHHHHHHHHHHH----HCcHHHHH-----------------------------------HHHHHHHHHHcccccHH
Confidence 3444688888888877 67766553 222233333334 555
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHH--H
Q 003273 515 TARVVFDNLK---QRNVVSWTSLMTGY----GMH---GLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVD--Q 581 (834)
Q Consensus 515 ~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~ 581 (834)
++++.++.+. ..+...|+.-...+ ... +++++++.+++++.+ ..| |...|..-...+.+.|.++ +
T Consensus 87 eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~ 164 (306)
T 3dra_A 87 DELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAK 164 (306)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHH
Confidence 5555555544 22344454443333 333 455666666666665 334 3445555555555555555 5
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANR------LDEAVELIEGM-PM-EPTPIIWVALLNGCRIHAN-VELGEL 652 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~-~~~a~~ 652 (834)
++++++.+.+. -.-+...|+.-..++.+.|. +++++++++++ .. .-|...|+-+...+...|+ .+....
T Consensus 165 EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 165 ELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 66666655532 12233444444444444444 56666666554 11 2345666666666655554 233444
Q ss_pred HHHHHHhcC---CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 653 AANRLLELE---SEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 653 ~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.++++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555554 55666666777777777777777777766654
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.1e-07 Score=96.82 Aligned_cols=192 Identities=10% Similarity=-0.054 Sum_probs=138.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.+...+..+...|.+.|++++|...|++.. .| +...|..+...|...|++++|+..+++.++ +.|+ ...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 455667778888999999999999999876 34 778899999999999999999999999988 6776 67788888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 649 (834)
.++...|++++|...|+...+. .|+. ..+...+....+.....+... .......++..+...+ ..+. .|+.+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHH
Confidence 9999999999999999987642 2321 011111222222211111111 2222333444444333 3333 688999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHhc
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIYANA-GRWKDVARIRSLMKHT 694 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 694 (834)
|.+.++++++++|++......+..++... +++++|.++|..+.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998887878888888777 7899999999988653
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=2e-06 Score=83.10 Aligned_cols=144 Identities=9% Similarity=-0.051 Sum_probs=103.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM 578 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 578 (834)
+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 455677788889999999999888888888888888888889999999999988888 3454 6678888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
+++|...|+...+...-.+... +...| +...|+ ...|..+...+...|+.+.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887764211111000 00000 011222 356777777788888888888888888
Q ss_pred HhcCCCC
Q 003273 658 LELESEK 664 (834)
Q Consensus 658 ~~~~p~~ 664 (834)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888865
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=1.2e-06 Score=84.64 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRI 643 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 643 (834)
+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 444555566677777777776644 2456667777777777777777777777665 12 2356788888888999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 644 HANVELGELAANRLLELESEKD----------------GSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.|+.+.|+..+++++++.|++. .++..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 899999999999999999999999987653
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=7.8e-06 Score=83.02 Aligned_cols=231 Identities=8% Similarity=0.033 Sum_probs=172.8
Q ss_pred HHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcC--ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNG--GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
...+....++|...++.+...+|+ ...||.--..+...| ++++++++++.++. ..|...+.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~y~a------------ 105 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKNYQI------------ 105 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTCCHH------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCcccHHH------------
Confidence 334444557899999998866774 567998888888888 99999999999987 56655432
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHH----Hhc---CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChH-
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMY----SRS---GDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGD- 545 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~- 545 (834)
++.-...+ .+. ++++++..+++.+. .+|..+|+.-.-.+.+.|.++
T Consensus 106 -----------------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 106 -----------------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred -----------------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 11111111 223 67888888888887 457788888888888888888
Q ss_pred -HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 546 -KAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM------VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 546 -~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
++++.++++++. .| |...|+.-.....+.+. +++++++++.++.. -+-+...|+.+..++.+.|+..+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChH
Confidence 999999999984 55 46667766666777676 89999999988752 33467788888888988887544
Q ss_pred -HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCCCCchHHHHHH
Q 003273 618 -AVELIEGMP-M----EPTPIIWVALLNGCRIHANVELGELAANRLLE-LESEKDGSYTLLSN 673 (834)
Q Consensus 618 -A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 673 (834)
+.++.++.- . ..+...+..+...+.+.|+.++|.++++.+.+ .+|-....+...++
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 556777652 1 24677889999999999999999999999997 79987766665544
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=7.6e-05 Score=82.00 Aligned_cols=214 Identities=10% Similarity=0.018 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 487 (834)
.+..+|+++....| +...|-..+.-+.+.|+.++|..+|++.+. . |....+.. +++.....+ +++..+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~--~---P~~~~l~~---~y~~~~e~~---~~~~~l 265 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE--M---SDGMFLSL---YYGLVMDEE---AVYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H---CCSSHHHH---HHHHHTTCT---HHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--C---CCcHHHHH---HHHhhcchh---HHHHHH
Confidence 34566666553333 456677777777788888888888888887 3 65543221 111111000 011111
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 567 (834)
. ..+.... .+.+... ........|-..+..+.+.+..+.|..+|++. +. ..++...|.
T Consensus 266 ~----------------~~~~~~~-~~~~~~~---~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 266 K----------------RKYSMGE-AESAEKV---FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp H----------------HHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred H----------------HHHHhhc-cchhhhh---cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 1 1110000 0000000 00011245767777776778889999999988 32 112333343
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 003273 568 VLLYA-CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646 (834)
Q Consensus 568 ~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 646 (834)
..... +...++.+.|..+|+...+.++- ++..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 22221 12234689999999988876433 34456677888888999999999999984 356788888887778888
Q ss_pred HHHHHHHHHHHHh
Q 003273 647 VELGELAANRLLE 659 (834)
Q Consensus 647 ~~~a~~~~~~~~~ 659 (834)
.+.+..++++..+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776654
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=1e-06 Score=79.02 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
...+..+...+.+.|++++|.+.|++. ... .+...|..+..++...|+++.|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556677778888888888888776 223 367788889889999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=7.8e-07 Score=91.86 Aligned_cols=197 Identities=9% Similarity=-0.026 Sum_probs=150.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 552 (834)
..|++++|.+++....+.... . .+...+++++|...|... ...|...|++++|+..|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 357888888888887764321 0 111157888888887654 567888999999999999
Q ss_pred HHHHcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003273 553 QMRKEG----LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI--SA--RAEHYACIVDLLGRANRLDEAVELIE 623 (834)
Q Consensus 553 ~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (834)
+..+.. -.+. ..+|..+...|...|++++|+..|++..+-+.- .| ....+..+..+|.+ |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 987631 1111 457888899999999999999999987643211 12 24678889999999 99999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchhHHHHHH
Q 003273 624 GMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKD------GSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 624 ~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
+.- ...+ ..++..+...+...|+++.|+..+++++++.|++. ..+..++.+|...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 761 1111 45788888999999999999999999999877654 267778888999999999999999
Q ss_pred HHH
Q 003273 690 LMK 692 (834)
Q Consensus 690 ~m~ 692 (834)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 886
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=2.3e-06 Score=74.13 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++. .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34444555555555555555555555432 12234455555556666666666666655541 123566788888888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 679 (834)
...|+.+.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888877654
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=2.1e-06 Score=75.08 Aligned_cols=117 Identities=8% Similarity=-0.049 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555555556666666666555432 1223455555666666666666666666554 112 3466788888888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 682 (834)
...|+.+.|...+++++++.|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888764
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.9e-06 Score=84.07 Aligned_cols=216 Identities=10% Similarity=-0.010 Sum_probs=117.2
Q ss_pred hCCChHHHHHHHHhcCCCCC-CccchHHH-------HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHH-HHHHhh
Q 003273 403 KCKSVDVARVMFDAIAPKNR-DVATWTVM-------IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA-LMACAR 473 (834)
Q Consensus 403 ~~g~~~~A~~~f~~~~~~~~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l-l~a~~~ 473 (834)
..++.+.|.+.|.++....| ....|+.+ ...+.+.++..+++..+..-.. +.|+......- ...|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~----l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ----ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT----CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc----CChhhhhhhhccCCcccc
Confidence 57999999999999886666 46788888 4666666777777777766644 56654321100 000000
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 551 (834)
+...+. .-..+.-.+..++...|++++|.++|+.+. .|+......+...+.+.|++++|+..|
T Consensus 94 --------------~~~~v~-~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 94 --------------ITYPVT-SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp --------------CEEECS-SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------cccccC-CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000000 112334455666777777777777777776 232224444444555666666666666
Q ss_pred HHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 552 DQMRKEGLAPD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS-ARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 552 ~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
++... .|+ ...+..+..++...|++++|+..|++... +-. |..
T Consensus 159 ~~a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~--g~~~P~~--------------------------- 206 (282)
T 4f3v_A 159 KSAGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND--SPAGEAC--------------------------- 206 (282)
T ss_dssp TTGGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--STTTTTT---------------------------
T ss_pred HHhhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--CCCCccc---------------------------
Confidence 53332 121 12344455555555555555555554432 111 210
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 627 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
....+..+..++...|+.++|...++++.+.+|+ +.+...|.+
T Consensus 207 ---~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 207 ---ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 1224445555566666666666666666666665 555444443
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=5.9e-06 Score=84.54 Aligned_cols=163 Identities=6% Similarity=-0.097 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCC--hHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-G----VTFLVLLYACSHSGMVDQGLKYFDSMSKEFG--ISAR--AEH 601 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~~ 601 (834)
+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++...+... ..+. ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33345556666777777777766665321111 0 1233344455666777777777776653211 1111 346
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------CCc
Q 003273 602 YACIVDLLGRANRLDEAVELIEGMP----MEPT-----PIIWVALLNGCRIHANVELGELAANRLLELESE------KDG 666 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 666 (834)
|+.+...|...|++++|.+.++++. ..|+ ..++..+...|...|++++|...+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777777777787777777776541 1122 257888888899999999999999998887532 146
Q ss_pred hHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 003273 667 SYTLLSNIYANAGRWKDV-ARIRSLMKH 693 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 693 (834)
+|..++.+|...|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999999999999999 776776653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=2.4e-06 Score=78.62 Aligned_cols=126 Identities=4% Similarity=-0.067 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRI 643 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 643 (834)
+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444444555555555555544421 1123444555555555555555555555544 11 2346678888888888
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCCchhHHHHHHHHHh
Q 003273 644 HANVELGELAANRLLELESEKDGSYTLLSN--IYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 693 (834)
.|+.+.|...+++++++.|++...+..+.. .+...|++++|...+.....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999999988877744444 47888999999988876653
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.43 E-value=1e-05 Score=78.12 Aligned_cols=161 Identities=12% Similarity=-0.067 Sum_probs=130.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG----LGDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
.++..+..|..+|...+++++|...|++.. ..+...+..|...|.. | +.++|+..|++..+.| +...+..|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 456777888889999999999999999887 4567788888888877 6 8999999999998753 56777788
Q ss_pred HHHHHh----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 003273 570 LYACSH----SGMVDQGLKYFDSMSKEFGISAR---AEHYACIVDLLGR----ANRLDEAVELIEGMP-MEPTPIIWVAL 637 (834)
Q Consensus 570 l~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l 637 (834)
...|.. .+++++|..+|+...+ ..|. +..+..|..+|.. .+++++|+++|++.. ..++...+..|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 888877 8899999999998863 3443 6788889999988 889999999999873 22566677777
Q ss_pred HHHHHhc-C-----cHHHHHHHHHHHHhcCC
Q 003273 638 LNGCRIH-A-----NVELGELAANRLLELES 662 (834)
Q Consensus 638 l~~~~~~-g-----~~~~a~~~~~~~~~~~p 662 (834)
...|... | |.++|...++++.+..+
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777543 3 89999999999998865
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=2.2e-06 Score=75.38 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNG 640 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 640 (834)
..+..+...+...|++++|..+|+...+ ..| +...+..+..+|...|++++|++.+++. .. +.+...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344444455555555555555554442 122 3444555555555555555555555544 11 2346678888888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
+...|+.+.|...++++++++|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999888899999988887764
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=6.7e-06 Score=84.10 Aligned_cols=159 Identities=6% Similarity=-0.072 Sum_probs=112.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC-CCChh----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGL-APDGV----TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR----AEHYACI 605 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 605 (834)
+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..|+.+.+...-.++ ...++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777888888888888776321 12211 2234555666677888888888877652111222 3357788
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------CchHHH
Q 003273 606 VDLLGRANRLDEAVELIEGMP-------ME-PT-PIIWVALLNGCRIHANVELGELAANRLLELESEK------DGSYTL 670 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 670 (834)
...|...|++++|.+.++++- .. +. ..++..+...|...|++++|...+++++++.++. +.+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888888888888888777652 11 11 3378888889999999999999999999875443 568999
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHh
Q 003273 671 LSNIYANAGR-WKDVARIRSLMKH 693 (834)
Q Consensus 671 l~~~~~~~g~-~~~a~~~~~~m~~ 693 (834)
++.+|...|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 5999999887754
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=9.7e-07 Score=92.27 Aligned_cols=144 Identities=12% Similarity=0.007 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 606 (834)
+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+.-. -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 344666666667777777777777777766 34432100 0011110000 0135677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhH
Q 003273 607 DLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 684 (834)
.+|.+.|++++|++.+++. ... .+...|..+..++...|+++.|+..++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887776 222 35778999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHH
Q 003273 685 -ARIRSLMK 692 (834)
Q Consensus 685 -~~~~~~m~ 692 (834)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.8e-06 Score=75.45 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..+..+...+.+.|++++|++.|++. ... .+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566677777778888887777765 222 3577888888888999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhc
Q 003273 678 AGRWKDVARIRSLMKHT 694 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (834)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999888764
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=1.4e-06 Score=86.30 Aligned_cols=181 Identities=8% Similarity=-0.013 Sum_probs=139.6
Q ss_pred hcCCHHHHHHHHhhcC--CC-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCh---------------
Q 003273 509 RSGDIDTARVVFDNLK--QR-NVVSWTSL-------MTGYGMHGLGDKAHWAFDQMRKEGLAPDG--------------- 563 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~--~~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 563 (834)
..++...|.+.|.++. .| ....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5789999999999887 34 45689888 4566666666667666666554 44432
Q ss_pred -------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 003273 564 -------VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP----I 632 (834)
Q Consensus 564 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 632 (834)
.....+..++...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123456678899999999999988763 3465446667777999999999999999877533433 3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELE--SE-KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+..+..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67888888999999999999999998643 54 4457889999999999999999999999874
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=1.2e-06 Score=79.13 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=74.3
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 003273 559 LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWV 635 (834)
Q Consensus 559 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 635 (834)
+.|+ ...+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.|++. ... .+...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 4453 444555666666677777777777666532 1224556666667777777777777777665 222 3466788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
.+..++...|+.++|+..+++++++.|+++.....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 88888889999999999999999999887765433
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=1.1e-06 Score=84.12 Aligned_cols=173 Identities=4% Similarity=-0.097 Sum_probs=102.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 577 (834)
+..+......|++++|.+.++.... .....|..+...+...|++++|+..|++.++ ..|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 4445555566777777776664432 2344677777788888888888888888887 34432111000
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003273 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAAN 655 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~ 655 (834)
..+.-. .. .....+..+..+|.+.|++++|++.+++. ... .+...|..+..++...|+++.|...++
T Consensus 78 ~~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 00 01245666677777777777777777665 222 356788888888999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCchhHH-HHHHHHHhc
Q 003273 656 RLLELESEKDGSYTLLSNIYANAGRWKDVA-RIRSLMKHT 694 (834)
Q Consensus 656 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 694 (834)
++++++|++..++..++.++...|+.+++. ..++.|...
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888776 455555433
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=2.8e-06 Score=79.45 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCcH--HHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNG-CRIHANV--ELG 650 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~-~~~~g~~--~~a 650 (834)
.|++++|...++...+. -+.+...+..+..+|...|++++|.+.+++. .. +.+...|..+... +...|+. +.|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444321 1123344444555555555555555555443 11 1245566666666 5566776 777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...++++++.+|+++.++..++.+|...|++++|...++.+.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777777777777888888888888888777777654
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.29 E-value=1.5e-05 Score=81.48 Aligned_cols=162 Identities=9% Similarity=-0.064 Sum_probs=118.8
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--hh
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLKQ--R-NV------VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA---PD--GV 564 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~ 564 (834)
.+...+..|...|++++|.+.+....+ + .. ..+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334567778889999999998876541 1 11 22344556677788999999999998863221 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-C------CCC-H
Q 003273 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-----AEHYACIVDLLGRANRLDEAVELIEGMP-M------EPT-P 631 (834)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~p~-~ 631 (834)
+++.+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|.+.+++.- . ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732222222 2578899999999999999999988751 1 111 5
Q ss_pred HHHHHHHHHHHhcCcHHHH-HHHHHHHHhc
Q 003273 632 IIWVALLNGCRIHANVELG-ELAANRLLEL 660 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 660 (834)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778887765
No 139
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=1.1e-05 Score=88.44 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=58.9
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 580 (834)
..|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..+++.++ +.|+ ..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666666554 22355566666666666666666666666665 3443 455555555666666666
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 003273 581 QGLKYFDSMSKEFGISARAEHYACIVDL--LGRANRLDEAVELIE 623 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 623 (834)
+|.+.|++..+...- +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655532111 12223333333 445555555555554
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.26 E-value=7.7e-06 Score=73.75 Aligned_cols=95 Identities=14% Similarity=-0.009 Sum_probs=63.2
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...|.+.|++++|...|++.. . .+...|..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 344455566666677777777777777665 2 3556677777777777777777777777776 4554 56666667
Q ss_pred HHHHhcCCHHHHHHHHHHhHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~ 591 (834)
.++...|++++|...|+...+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=5e-06 Score=77.65 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH-
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL-LGRANRL- 615 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~g~~- 615 (834)
...|++++|+..+++..+ ..|+ ...+..+...+...|++++|..+|+.+.+.. +.+...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345777788888888777 3454 6777778888888888888888888776431 2245667777777 7788887
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 616 -DEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 616 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
++|.+.++++ ...| +...|..+...+...|+.+.|...+++++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888776 2233 467888888889999999999999999999999876544
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=1.3e-05 Score=73.56 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
.|..+...+...|++++|+..|++..+ ..| +..++..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 344444445555555555555555554 233 2444455555555555555555555555432 12234445555555
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCcHHHHHHHHHHHHh
Q 003273 609 LGRANRLDEAVELIEGM-PMEP-TPIIWVA--LLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|.+.|++++|.+.+++. ...| +...|.. +...+...|+.++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 55555555555555544 1112 2333322 22224555666666666665544
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=2.6e-06 Score=73.78 Aligned_cols=94 Identities=15% Similarity=-0.010 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667778888888888888776 2234 5778888888899999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhc
Q 003273 679 GRWKDVARIRSLMKHT 694 (834)
Q Consensus 679 g~~~~a~~~~~~m~~~ 694 (834)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888654
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=1.7e-05 Score=75.76 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=44.0
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHH
Q 003273 509 RSGDIDTARV---VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 509 k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 580 (834)
..|++++|.+ .+..-+......|..+...+...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322233455666666666667777777666665541 11221 344555555666666666
Q ss_pred HHHHHHHHhH
Q 003273 581 QGLKYFDSMS 590 (834)
Q Consensus 581 ~a~~~~~~m~ 590 (834)
+|..+++...
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=2.7e-06 Score=76.20 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ... .++..|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 33444555566666666666666665532 1223455566666666666666666666655 112 3456777788888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
...|+.+.|...+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 888889999999999999888877665544333
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=8.1e-06 Score=72.27 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
+...+..+...+.+.|++++|...|++. ... .+...|..+...+...|+++.|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666666777777777777766655 122 34677888888888889999999999999999998888999999999
Q ss_pred HhcCCchhHHHHHHHHHhc
Q 003273 676 ANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~~ 694 (834)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988888764
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=5.6e-06 Score=90.92 Aligned_cols=115 Identities=4% Similarity=-0.049 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 649 (834)
+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+.++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44455555555555555432 22 2455556666666666666666666554 2233 46788889899999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchhHHHHHHH
Q 003273 650 GELAANRLLELESEKDGSYTLLSNI--YANAGRWKDVARIRSL 690 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 690 (834)
|++.++++++++|++..++..++.+ +.+.|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988 8899999999998874
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=3.2e-05 Score=73.75 Aligned_cols=153 Identities=8% Similarity=-0.029 Sum_probs=115.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcC
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISA-RAEHYACIVDLLGRAN 613 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g 613 (834)
...|++++|.+.++.... ..+ ...++..+...+...|++++|..++++..+.. +..| ....+..+...|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457999999996655543 222 36778888899999999999999999876522 2222 2567888999999999
Q ss_pred CHHHHHHHHHhCC----CCC-C----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CC----chHHHHHHHHHhc
Q 003273 614 RLDEAVELIEGMP----MEP-T----PIIWVALLNGCRIHANVELGELAANRLLELESE--KD----GSYTLLSNIYANA 678 (834)
Q Consensus 614 ~~~~A~~~~~~~~----~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~ 678 (834)
++++|.+.+++.. ..+ + ...+..+...+...|+++.|...+++++++.+. ++ .++..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 9999999988751 122 2 346778888899999999999999999876432 22 2468899999999
Q ss_pred CCchhHHHHHHHHHh
Q 003273 679 GRWKDVARIRSLMKH 693 (834)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (834)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988765
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=5.4e-06 Score=76.33 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..+..+...+.+.|++++|++.|++. ...| +...|..+...+...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544 1122 455666666666666666666666666666666666666666666666
Q ss_pred cCCchhHHHHHHHHHhc
Q 003273 678 AGRWKDVARIRSLMKHT 694 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (834)
.|++++|...+++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 66666666666666543
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=6.3e-06 Score=69.72 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSNIY 675 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 675 (834)
..+..+...+.+.|++++|...+++. .. +.+...|..+...+...|+.++|...++++++..|+ +...+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34555666666667777776666654 11 235667888888888889999999999999999998 888899999999
Q ss_pred Hhc-CCchhHHHHHHHHHhcC
Q 003273 676 ANA-GRWKDVARIRSLMKHTG 695 (834)
Q Consensus 676 ~~~-g~~~~a~~~~~~m~~~~ 695 (834)
... |++++|.+.++...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 999 99999999988887653
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.21 E-value=4.3e-05 Score=78.04 Aligned_cols=158 Identities=9% Similarity=-0.052 Sum_probs=116.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C---Ch---h-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ--R---NV---V-SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PD----GVTFLV 568 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~--~---~~---~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 568 (834)
.+..+...|++++|...+++..+ + +. . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999887653 1 11 1 2334666666778999999999999884322 22 226888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEF----GISAR-AEHYACIVDLLGRANRLDEAVELIEGMP-------MEPT-PIIWV 635 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 635 (834)
+..+|...|++++|..+|+.+.+.. +..+. ...|..+...|.+.|++++|.+.+++.- ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887422 12222 3478889999999999999999887651 1122 56888
Q ss_pred HHHHHHHhcC-cHHHHHHHHHHHHhc
Q 003273 636 ALLNGCRIHA-NVELGELAANRLLEL 660 (834)
Q Consensus 636 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 660 (834)
.+...+...| +.+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888899999 469999999998875
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.0001 Score=75.50 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-ChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhC-C-ChhHHHHHHH
Q 003273 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS-G-DAEGGLMLFA 228 (834)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 228 (834)
++|..+.+.++... +.+..+|+.--..+...| .+++++..++.+....+.+..+|+.-...+.+. + +++++++++.
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45566666666554 344555666666666666 477777777777776666777777776666655 5 6777777777
Q ss_pred HhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCH--------HHHH
Q 003273 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF--------EDAF 300 (834)
Q Consensus 229 ~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~--------~~A~ 300 (834)
++.+. .| +|..+|+.-...+.+.|.+ ++++
T Consensus 150 k~L~~---dp---------------------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 150 GSLLP---DP---------------------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHTSS---CT---------------------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHh---CC---------------------------------------CCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 77643 11 2333343333333333333 3888
Q ss_pred HHHHHhHhcCCCCCeeeHHHHHHHHHhcCC-------hhHHHHHHHHHHH
Q 003273 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGH-------GHEALDVFRQMQF 343 (834)
Q Consensus 301 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~ 343 (834)
+.++++.+..+. |..+|+-....+.+.++ ++++++.++++..
T Consensus 188 e~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 188 DWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 889999888777 88888888888777776 5677777777765
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=2.1e-06 Score=87.25 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=41.9
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
.+...+..+...|.+.|++++|...|++.....| +...|..+..+|...|++++|+..|++..+
T Consensus 36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 36 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666667777777777777776665444 445666666677777777777777766655
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=1.9e-05 Score=67.36 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHA 645 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 645 (834)
.+...+...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.+++. ... .+...|..+...+...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3333444444444444444444321 1112333444444444444444444444433 111 23556666666677777
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
+.+.|...++++++..|+++..+..++.+
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777766666555544
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00024 Score=72.42 Aligned_cols=189 Identities=11% Similarity=-0.033 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-hHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG--DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL-GDKAHWA 550 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l 550 (834)
++.+..+...+..... .+..+++.-...+.+.| .++++..+++.+. ..|...|+.-.-.+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4555555555555433 45556655555556666 3677777777776 3466677776666667776 4777777
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc---
Q 003273 551 FDQMRKEGLAPD-GVTFLVLLYACSHS--------------GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA--- 612 (834)
Q Consensus 551 ~~~m~~~g~~p~-~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--- 612 (834)
++++++ ..|+ ...|+.....+.+. +.++++++++...... -+-|...|+-+--++.+.
T Consensus 168 ~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc
Confidence 777777 3453 55555554444433 3466667766666531 222344555444444444
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 613 --------NRLDEAVELIEGM-PMEPTPIIWVALLNGC-----RIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 613 --------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++++++|...+-|.-+.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 3456666666655 333443 343222211 1234555666666677777775555444443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.3e-05 Score=70.26 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
..+..+...|.+.|++++|++.+++. ... .+...|..+...+...|+.+.|...++++++++|++...+..+..+..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 34444455555555555555555443 112 245677777777888888888888888888888887777766666543
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=7.4e-06 Score=71.59 Aligned_cols=93 Identities=5% Similarity=-0.032 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG-------SYTLL 671 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 671 (834)
.+..++..+.+.|++++|++.|++. ...| +...|..+..++...|+++.|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777778888888888888766 2233 5778889999999999999999999999999887654 67788
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 003273 672 SNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999988765
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=1.3e-05 Score=68.44 Aligned_cols=97 Identities=6% Similarity=0.068 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
....+..++..+...|++++|.+.+++. ... .+...|..+...+...|+.+.|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556778889999999999999999987 222 46778899999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhc
Q 003273 676 ANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~~ 694 (834)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.9e-05 Score=68.81 Aligned_cols=108 Identities=10% Similarity=-0.026 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRI 643 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 643 (834)
+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444444444444444444321 1112344445555555555555555555444 1122 45677777777888
Q ss_pred cCcHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 003273 644 HANVELGELAANRLLELE------SEKDGSYTLLSNIY 675 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 675 (834)
.|+.+.|...++++++++ |++......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 77666666665554
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-05 Score=70.06 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 597 ARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.++|...++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888999999999999999999987 3344 677899999999999999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
|...|++++|.+.++...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=2.5e-05 Score=71.79 Aligned_cols=108 Identities=11% Similarity=-0.025 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|+.+|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445555555555555555555555432 1123455555666666666666666666554 1223 467888888899
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
...|+++.|+..++++++++|++...+...+-
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999886655543
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=1.4e-05 Score=73.42 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999888764
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=0.00034 Score=71.75 Aligned_cols=170 Identities=13% Similarity=0.061 Sum_probs=93.9
Q ss_pred HhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcC-ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHH
Q 003273 402 AKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNG-GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479 (834)
Q Consensus 402 ~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 479 (834)
.+.+..++|.++++.+...+| +...|+.--..+...| .++++++++..++. ..|
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nP-------------------- 120 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNL-------------------- 120 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTC--------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCC--------------------
Confidence 334445566666666654454 3445666555555555 36666666666655 333
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhc-C-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------H
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRS-G-DIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGD--------K 546 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~ 546 (834)
.+..+++.-...+.+. + ++++++.+++.+.+ +|...|+--.-.+.+.|..+ +
T Consensus 121 ---------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 121 ---------------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---------------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 3333444434444444 4 66777777777763 35556665555555544444 7
Q ss_pred HHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 547 AHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM-------VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 547 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
+++.++++++ ..| |...|+.....+.+.+. +++++++++.++.. -+-|...|+.+-.++.+.|+
T Consensus 186 ELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 186 ELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 7777777777 344 35556666666655554 56666666655531 22234455555555555443
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.11 E-value=4.8e-05 Score=65.51 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=39.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHh
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSH 575 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 575 (834)
+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|+++.+. .| +..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 3444444444444444444444443 123334444444444444444444444444442 22 23344444444444
Q ss_pred cCCHHHHHHHHHHhH
Q 003273 576 SGMVDQGLKYFDSMS 590 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~ 590 (834)
.|++++|..+++.+.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.2e-05 Score=70.29 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|+..+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4566777777888888888888888776 44566 578888888899999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhc
Q 003273 673 NIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 673 ~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+|...|++++|...++...+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=9.3e-06 Score=72.47 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLEL-------ESEKDGSY----TLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..|..+..++...|++++|+..+++++++ +|++..+| ..++.+|...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 99988888 99999999999999999999888753
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=5.7e-06 Score=78.94 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM----PMEPT--------------PIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
..+..+...+.+.|++++|++.|++. +..|+ ...|..+..++...|+++.|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555666666777777777766654 11111 2688888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 662 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|+++.++..++.+|...|++++|.+.++...+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.06 E-value=3.1e-05 Score=67.55 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
.|..+...+.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|++.++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 455666666777777777777777766 4554 5556666667777777777777766655
No 169
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=4.1e-05 Score=66.63 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=44.9
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYAC 573 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 573 (834)
..+..+...+...|++++|...|++.. ..+...|..+...+...|++++|+..+++..+. .|+ ...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 334444455555555555555555443 123444555555555555555555555555542 332 34444444455
Q ss_pred HhcCCHHHHHHHHHHhH
Q 003273 574 SHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~ 590 (834)
...|++++|..+|+...
T Consensus 91 ~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55555555555555444
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.02 E-value=3.2e-05 Score=80.69 Aligned_cols=119 Identities=9% Similarity=-0.068 Sum_probs=85.6
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----------------VVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.....+..+...|.+.|++++|...|++.. .|+ ...|..+..+|.+.|++++|+..|++.++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567778888999999999999998876 333 36777788888888888888888888887
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 003273 557 EGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 557 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 618 (834)
+.|+ ...+..+..++...|++++|+..|+.+.+. .| +...+..+..++.+.|+.++|
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4564 666777777788888888888888777642 33 344555555666666665555
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=3.5e-05 Score=68.06 Aligned_cols=99 Identities=7% Similarity=-0.104 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNG 640 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 640 (834)
...+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|...+++. ... .+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 444445555555555555555555554432 1122444555555555555555555555544 112 245677777777
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCC
Q 003273 641 CRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+...|+.+.|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77778888888888888887776
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=4.4e-05 Score=83.38 Aligned_cols=144 Identities=11% Similarity=-0.002 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 44667777777777778888877777776 33432110 0 000000 000 01356777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 608 LLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
+|.+.|++++|++.++++ ... .+...|..+..++...|+++.|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 222 357789999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 003273 686 R-IRSLMKH 693 (834)
Q Consensus 686 ~-~~~~m~~ 693 (834)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=1.1e-05 Score=71.90 Aligned_cols=111 Identities=12% Similarity=-0.010 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-------------GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 596 (834)
.|......+.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..++..++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 455556666677777777777777777 4454 11444444445555555555554443331
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 597 ARAEHYACIVDLLGRANRLDEAVELIEG-MPMEPT-PIIW----VALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
+|++ .+..|+ ...| .....++...|++++|+..|+++++++|+|.+.+.-
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1111 133666 4588 999999999999999999999999999998776444
Q ss_pred H
Q 003273 671 L 671 (834)
Q Consensus 671 l 671 (834)
+
T Consensus 142 ~ 142 (159)
T 2hr2_A 142 K 142 (159)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=2.3e-05 Score=68.45 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEPT-P---IIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLLSNIYA 676 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 676 (834)
+...+.+.|++++|.+.+++. ...|+ . ..|..+...+...|+++.|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666554 11122 2 356666666777777777777777777777777 566777777777
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888777777777653
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=4.5e-05 Score=64.24 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP---TPIIWVALLNGC 641 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 641 (834)
+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 333444444444444444444444321 1122334444455555555555555555443 1122 355666666666
Q ss_pred Hhc-CcHHHHHHHHHHHHhcCCCC
Q 003273 642 RIH-ANVELGELAANRLLELESEK 664 (834)
Q Consensus 642 ~~~-g~~~~a~~~~~~~~~~~p~~ 664 (834)
... |+.+.|.+.++++++..|.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 666 77777777777777776654
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00029 Score=78.63 Aligned_cols=169 Identities=5% Similarity=-0.086 Sum_probs=137.7
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 003273 511 GDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL----------GDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHS 576 (834)
Q Consensus 511 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 576 (834)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34567888888877 3356678887777777777 8999999999998 5675 77788888888888
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 003273 577 G--MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN-RLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH------- 644 (834)
Q Consensus 577 g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 644 (834)
+ ++++++++++++.+. -+-+...|+.-..++.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999853 2335677888888888889 899999999988 3334 577898888876653
Q ss_pred -------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 645 -------ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 645 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
+.++++.+.+.++++++|+|..+|..+..++...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998666
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=5.2e-05 Score=65.99 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------CchHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK-------DGSYTL 670 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 670 (834)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|+++.|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44566667777777777777777665 1 22356778888888888999999999999999988776 778999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhc
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.+|...|++++|.+.++.+.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.92 E-value=6.9e-06 Score=70.61 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHH
Q 003273 612 ANRLDEAVELIEGM-PM---EPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 686 (834)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555554 22 132 44666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 003273 687 IRSLMKH 693 (834)
Q Consensus 687 ~~~~m~~ 693 (834)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=6.5e-05 Score=68.22 Aligned_cols=135 Identities=14% Similarity=0.045 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------- 80 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence 4555666666666666666666666542100 11 12344445555555555555555554432110
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHh
Q 003273 605 IVDLLGRANRLDEAVELIEGMPMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESE------KDGSYTLLSNIYAN 677 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~ 677 (834)
..+..+ ....+..+...+...|+.+.|...+++++++.+. ....+..++.+|..
T Consensus 81 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 81 -------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 000000 1234555566666677777777777766665221 13467788888888
Q ss_pred cCCchhHHHHHHHHHh
Q 003273 678 AGRWKDVARIRSLMKH 693 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~ 693 (834)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888888888877654
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.91 E-value=3.5e-05 Score=67.09 Aligned_cols=114 Identities=8% Similarity=-0.094 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++.+.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 34555666666666666666666666663 33 34555555666666666666666666554321 10
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 608 LLGRANRLDEAVELIEGMPMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
..++ ..+|..+...+...|+.+.|...++++++..| ++.....+..++.
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 44556666666667777777777777777766 4555555554443
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.90 E-value=0.001 Score=67.78 Aligned_cols=178 Identities=11% Similarity=0.017 Sum_probs=131.3
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-HHHHHHH
Q 003273 513 IDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM-VDQGLKY 585 (834)
Q Consensus 513 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 585 (834)
++++...++.+. .++..+|+.-.-.+...|+ +++++.+++++.+ ..| |...|+.-...+...|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567778887776 4577899988888888884 8999999999999 456 57777777777788888 6999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc-----
Q 003273 586 FDSMSKEFGISARAEHYACIVDLLGRA--------------NRLDEAVELIEGM-PME-PTPIIWVALLNGCRIH----- 644 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~----- 644 (834)
++.+++. -.-+...|+....++.+. +.++++++++++. ... -|...|+-+-+.+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999863 234566777766666655 5688999998877 223 4678887666665444
Q ss_pred ------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCCchhHHHHHHHHHhc
Q 003273 645 ------ANVELGELAANRLLELESEKDGSYTLLSNIY---ANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 645 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 694 (834)
+-++.+++.++++++++|++.-.+..++... ...|..++....+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999998855544443322 2456677888888887764
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=9.4e-05 Score=80.27 Aligned_cols=189 Identities=9% Similarity=-0.049 Sum_probs=127.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CC------------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCh
Q 003273 505 DMYSRSGDIDTARVVFDNLKQ--RN------------------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDG 563 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~~--~~------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 563 (834)
..+.+.|++++|.+.|..+.+ ++ ..++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777776541 11 0136678888888899999988888876521 11222
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CC
Q 003273 564 ----VTFLVLLYACSHSGMVDQGLKYFDSMSKE---FGISA-RAEHYACIVDLLGRANRLDEAVELIEGMP-------ME 628 (834)
Q Consensus 564 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 628 (834)
...+.+...+...|.++++..+++..... .+..+ ....+..++..|...|++++|.+++++.. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12233333445678888888888766532 12222 25577788899999999999998887651 11
Q ss_pred CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---C----CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PT-PIIWVALLNGCRIHANVELGELAANRLLELESE---K----DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+. ..++..++..|...|+++.|...+++++...|. + ...+..++.++...|++++|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 347777888899999999999999988876432 1 24567778888889999999887766643
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.85 E-value=8.1e-05 Score=64.19 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA 645 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 645 (834)
+...+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334444555555555555554421 22 3444455555555555555555555544 1223 4557777777777888
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 003273 646 NVELGELAANRLLELESEKD 665 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~ 665 (834)
+.++|+..++++++++|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888887643
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=4.4e-05 Score=83.13 Aligned_cols=123 Identities=7% Similarity=0.033 Sum_probs=85.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFG--ISA----RAEHYACIVDLLGRANRLDEAVELIEGM---------PMEPT-PIIWVA 636 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 636 (834)
+...|++++|..+++...+... +-| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655443211 111 1345666666666677777666666554 23354 347888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhc-----CCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 637 LLNGCRIHANVELGELAANRLLEL-----ESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
|...|..+|++++|+..+++++++ .|+.+ .....|..++.+.|++++|..++..+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998874 56655 455688889999999999999999998754
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00016 Score=78.32 Aligned_cols=194 Identities=9% Similarity=-0.037 Sum_probs=127.2
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCcc------------------chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCC
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVA------------------TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~ 460 (834)
..+.+.|++++|.+.|..+....++.. ++..+...|...|++++|.+.+.++.. +.+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~----~~~~ 87 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE----YMMQ 87 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH----HHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHH
Confidence 456677899999999988764433211 255677788888888888888877754 1111
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----C---C-ChhHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----Q---R-NVVSW 531 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~---~-~~~~~ 531 (834)
.. +.. ....+.+.+...+...|+.++|..++.... . + -..++
T Consensus 88 ~~-------------~~~----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 88 FA-------------KSK----------------TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp SC-------------HHH----------------HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred cc-------------chH----------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 00 000 011122333444455677777777766554 1 1 13467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hHH
Q 003273 532 TSLMTGYGMHGLGDKAHWAFDQMRKEG----LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISAR--AEH 601 (834)
Q Consensus 532 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 601 (834)
..+...|...|++++|..++++....- -+|. ..++..++..|...|++++|..+++...... ..+|. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 778888999999999999998876531 1222 4567888889999999999999998775432 11111 356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
+..++..+...|++++|...|.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 778888889999999998877554
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.82 E-value=0.00018 Score=62.54 Aligned_cols=71 Identities=7% Similarity=-0.097 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHH
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 671 (834)
.+..+..+|.+.|++++|.+.+++. ...|+ ...+..+...+...|+.+.|...++++++..|+++......
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3334444444445555554444443 11122 34556666667777778888888888888777665544433
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.80 E-value=8.8e-05 Score=78.25 Aligned_cols=136 Identities=8% Similarity=-0.022 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVD 607 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 607 (834)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+ ... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHHH
Confidence 45666777777778888888877777661 11100 000011 110 1222 3567888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 608 LLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
+|.+.|++++|++.+++. ...| +...|..+..++...|+.++|+..++++++++|++..++..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988877 3444 46788899999999999999999999999999999999999999999888887775
Q ss_pred H
Q 003273 686 R 686 (834)
Q Consensus 686 ~ 686 (834)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=2.9e-05 Score=81.03 Aligned_cols=147 Identities=8% Similarity=-0.053 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...|..+...+.+.|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677788888889999999999999888 5666442 233444444443221 136778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCchhH
Q 003273 608 LLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY-ANAGRWKDV 684 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 684 (834)
+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 2233 5778999999999999999999999999999999999999888884 445667778
Q ss_pred HHHHHHHHhc
Q 003273 685 ARIRSLMKHT 694 (834)
Q Consensus 685 ~~~~~~m~~~ 694 (834)
...++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877653
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00012 Score=66.43 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=73.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC---
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RNV----VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PD--- 562 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--- 562 (834)
...++..+...|...|++++|...|++..+ ++. .++..+...+...|++++|+..+++..+.... ++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 355778889999999999999999998762 221 47888889999999999999999998763111 11
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 563 -GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 563 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
...+..+...+...|++++|..+++...+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566777778888888888888876653
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.78 E-value=7e-05 Score=68.53 Aligned_cols=77 Identities=13% Similarity=-0.022 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIY 675 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 675 (834)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777778888888888888887766 2233 567888899999999999999999999999999887 4455554443
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=4.5e-05 Score=65.39 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGI-SA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
.|++++|+..|++..+. +. .| +...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+.++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555421 10 12 2344555556666666666666666554 1123 4567777777788888888888
Q ss_pred HHHHHHHhcCCCCCchHH
Q 003273 652 LAANRLLELESEKDGSYT 669 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~ 669 (834)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888887765443
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=6.5e-05 Score=63.32 Aligned_cols=92 Identities=11% Similarity=-0.053 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------CchHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEK------DGSYT 669 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 669 (834)
+...+..+...+.+.|++++|++.+++. ... .+...|..+..++...|+++.|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456677777888888888888888776 222 357788889999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 003273 670 LLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~ 689 (834)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88999988888887765443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.70 E-value=7.8e-05 Score=77.73 Aligned_cols=151 Identities=9% Similarity=-0.033 Sum_probs=78.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 573 (834)
....+..+...|.+.|++++|...|++.. .|+... +...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45567788889999999999999999876 333221 222333334332221 13677777888
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCcHHHH
Q 003273 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNG-CRIHANVELG 650 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a 650 (834)
.+.|++++|+..++...+. -+.+...|..+..+|...|++++|++.|++. ...|+ ...+..|... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887642 1235677888888888888999998888887 34454 3455555544 3445667788
Q ss_pred HHHHHHHHhcCCCCC
Q 003273 651 ELAANRLLELESEKD 665 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~ 665 (834)
...++++++..|+++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 889999999988764
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.66 E-value=0.00032 Score=76.44 Aligned_cols=64 Identities=6% Similarity=-0.055 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999998764
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00017 Score=59.61 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+...|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357789999999999999999999999999999999999999999999999999999999988754
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00019 Score=57.71 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
...+..+...+.+.|++++|++.+++. ... .+...|..+...+...|+.+.|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777777777777777665 122 356678888888999999999999999999999999999999998887
Q ss_pred hcC
Q 003273 677 NAG 679 (834)
Q Consensus 677 ~~g 679 (834)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.00023 Score=75.04 Aligned_cols=113 Identities=5% Similarity=-0.032 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP-TPIIWVALLNGC 641 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 641 (834)
...+..+...+...|++++|+..|++..+.. |.. ...-..+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4456677777888888888888887766421 110 00011111111 122 356888899999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998764
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=5.9e-05 Score=67.11 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 611 RANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHAN----------VELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
|.+.+++|++.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555666555554 1222 45556656555555544 56999999999999999999999999999988
Q ss_pred C-----------CchhHHHHHHHHHhc
Q 003273 679 G-----------RWKDVARIRSLMKHT 694 (834)
Q Consensus 679 g-----------~~~~a~~~~~~m~~~ 694 (834)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999875
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00019 Score=61.08 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 618 AVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 618 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|++.+++. ...| +...|..+...+...|+++.|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445443 2233 57788888888999999999999999999999999999999999999999999999999888754
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00014 Score=79.07 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=88.4
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCCC---chHH
Q 003273 608 LLGRANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEKD---GSYT 669 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 669 (834)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 12344 358899999999999999999999999875 45544 5789
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 003273 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 740 (834)
.|+.+|..+|++++|..++++..+.-.+ . .| ..||...++..++.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------HG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------TC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------hC-CCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888653111 0 11 3799999988877776655543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00013 Score=61.45 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=69.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR------- 598 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------- 598 (834)
+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|+..++... .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 345677777888888888888888888887 4564 6777788888888888888888888876 44554
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
...+..+..++...|+.++|.+.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4456666667777777766666665553
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00024 Score=76.16 Aligned_cols=113 Identities=10% Similarity=0.099 Sum_probs=79.6
Q ss_pred HhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCC---CchHHH
Q 003273 609 LGRANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEK---DGSYTL 670 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~ 670 (834)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44455666665555443 11122 347788888888888888888888888764 3444 457889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~ 739 (834)
|+.+|..+|++++|..++++..+.-. +. . ...||...+++..|.+...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~-~~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR-VT----------------H-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-Hh----------------c-CCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988865311 00 1 1379999999888888877765
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.29 E-value=0.00084 Score=54.27 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 629 PTPIIWVALLNGCRIHAN---VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+|+..|..+..++...++ .+.|...++++++++|+++.+...+++.+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567788888888754444 6899999999999999999999999999999999999999999998754
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=0.0035 Score=69.92 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 003273 542 GLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM----------VDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 610 (834)
...++|++.++++++ +.|+ ...|+.--.++.+.|+ ++++++.++.+.+. -+-+...|..-.-++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346789999999999 7887 4556666666777776 99999999999853 2345667888888888
Q ss_pred hcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 003273 611 RAN--RLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANA------- 678 (834)
Q Consensus 611 ~~g--~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 678 (834)
+.| ++++|+++++++ . ...|...|+--.......| ..+++.+.++++++.+|+|..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 2 2346889999988888888 899999999999999999999999999998875
Q ss_pred -------CCchhHHHHHHHHHhc
Q 003273 679 -------GRWKDVARIRSLMKHT 694 (834)
Q Consensus 679 -------g~~~~a~~~~~~m~~~ 694 (834)
++++++.+.++.....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 4567888877776653
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.0004 Score=61.78 Aligned_cols=100 Identities=10% Similarity=-0.005 Sum_probs=61.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
..+.+.+++|++.+++..+ ..|+ ...|..+..++...++++.+....+ .++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~ 63 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQ 63 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHH
Confidence 3455667778888888777 5664 6667767777777665432111110 133
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcCCCCC
Q 003273 617 EAVELIEGM-PMEP-TPIIWVALLNGCRIH-----------ANVELGELAANRLLELESEKD 665 (834)
Q Consensus 617 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++.
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 444444443 2223 234555555555444 589999999999999999864
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.18 E-value=3.8e-06 Score=86.74 Aligned_cols=472 Identities=13% Similarity=0.129 Sum_probs=242.5
Q ss_pred CchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHH
Q 003273 82 APSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 82 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (834)
+++.|.+.-++...| ..|..|..+....+...+|++-|-+ .-|+..|..++.++.+.|.+++-...+...
T Consensus 40 ~ldRa~eyA~~~n~p----~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCC----CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCc----cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444444444444 3488899999888888888876532 236667889999999999999888887766
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCcc
Q 003273 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241 (834)
Q Consensus 162 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 241 (834)
.+. ..++.+-+.|+-+|+|.|++.+-++.+. -||+.-...+..-|...|.++.|.-+|..+..-
T Consensus 110 Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-------- 173 (624)
T 3lvg_A 110 RKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-------- 173 (624)
T ss_dssp STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC--------
T ss_pred HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH--------
Confidence 665 4556677899999999998766443321 136666778888889999988888887766422
Q ss_pred chHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHH
Q 003273 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321 (834)
Q Consensus 242 t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 321 (834)
.-+-..+..++++..+. +.|+ ...++.+|-.+-.+|...+.+.-|.-.--.+.- ...-...+
T Consensus 174 --akLAstLV~L~~yq~AV-----daAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~el 235 (624)
T 3lvg_A 174 --GRLASTLVHLGEYQAAV-----DGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEEL 235 (624)
T ss_dssp --TTTSSSSSSCSGGGSST-----TTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGG
T ss_pred --HHHHHHHHHHHHHHHHH-----HHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHH
Confidence 11111122222221111 1110 123556666666666666665555433322221 11222334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 003273 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401 (834)
Q Consensus 322 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 401 (834)
+.-|-..|.+++-+.+++.-.. .-....-+++-|.-.|
T Consensus 236 v~~YE~~G~f~ELIsLlEaglg------------------------------------------lErAHmGmFTELaILY 273 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALG------------------------------------------LERAHMGMFTELAILY 273 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTT------------------------------------------STTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhC------------------------------------------CCchhHHHHHHHHHHH
Confidence 4455555655555555554331 1123455667777777
Q ss_pred HhCCChHHHHHHHHhcCCC-C--------CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 402 AKCKSVDVARVMFDAIAPK-N--------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 402 ~~~g~~~~A~~~f~~~~~~-~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
+|-. .++-.+-++..-.+ + .....|..++-.|.+..+++.|.. .|.+. ....-+...|.-+ ..
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l---tMi~h-~~~Aw~h~~Fkdi---i~ 345 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH-PTDAWKEGQFKDI---IT 345 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH---TTTSC-HHHHCCGGGGTTT---GG
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH---HHHhC-ChhhccHHHHHHH---HH
Confidence 7653 33333333322211 1 234568888888888888886653 23220 0001111111111 11
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHH-------------HHHHHhcCCHHHHHHHHhhcCCCChhHHHH-HHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCL-------------IDMYSRSGDIDTARVVFDNLKQRNVVSWTS-LMTGY 538 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------------i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~-li~~~ 538 (834)
+.++.+.--+....-+ + ..|...+-| +.++.|.|++.-....+......|...-|- +-..|
T Consensus 346 KVaN~EiyYKAi~FYL----~-e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~ 420 (624)
T 3lvg_A 346 KVANVELYYRAIQFYL----E-FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLF 420 (624)
T ss_dssp GCSCSHHHHHHHHHHT----T-SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHH
T ss_pred HcchHHHHHHHHHHHH----H-hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111111111111111 1 222222333 344444444444444444444344333332 22233
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
....+++ +...-+.+|-+-..+.-|.++ ++ -+-.+.-..-..+|.+.++++++
T Consensus 421 IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 421 ITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp HHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHH-------------------HHHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHHHHHHhcccHHHH
Confidence 3333332 122222222222222222222 11 11222223334567778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
+++.++=..-.| .+......|+.+.+++.++-+++.+ +...+.....+|...=+.+-+.++
T Consensus 474 i~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 474 VELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHhhccChHHHHHH
Confidence 877654432222 2334556677777777777776654 345666666667666677766554
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.00025 Score=75.87 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCC---CchHHHHHH
Q 003273 612 ANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEK---DGSYTLLSN 673 (834)
Q Consensus 612 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 673 (834)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555443 12233 347788888888888888888888888774 3444 457889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 003273 674 IYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 674 ~~~~~g~~~~a~~~~~~m~~ 693 (834)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988865
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.11 E-value=0.0042 Score=54.64 Aligned_cols=87 Identities=6% Similarity=-0.122 Sum_probs=43.4
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----c
Q 003273 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELESEKDGSYTLLSNIYAN----A 678 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 678 (834)
.+|...+.+++|.++|++.-...++..+..|...|.. .+|.++|...++++.+. .++.++..|+.+|.. .
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 3333333334444444333212234444444444443 44555555555555554 245556666666666 5
Q ss_pred CCchhHHHHHHHHHhcC
Q 003273 679 GRWKDVARIRSLMKHTG 695 (834)
Q Consensus 679 g~~~~a~~~~~~m~~~~ 695 (834)
+++++|.+++++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 66666666666665544
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0022 Score=52.71 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
+...|..+...|...|++++|+..|++.++ ..|+ ...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777777777777777777776 4454 55666777777777777777777776653
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.03 E-value=0.0014 Score=55.43 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
+...|..+...|...|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|+...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566666666666666666666666665 3443 4555566666666666666666666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.015 Score=59.46 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 525 QRNVVSWTSLMTGYG--MHGL---GDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 525 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
..+...|...+.+.. ..+. ..+|+.+|++.++ ..|+ ...+..+.-++.. .. ..+- .+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~~----~~~~-~~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------RH----SQHP-LD 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------HH----HHSC-CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------Hh----ccCC-Cc
Confidence 356777888776643 3333 5789999999999 7888 5556655555431 00 0010 00
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
...... +..|.+....++. ..++.+|.++.-.+...|+++.|...++++++++| +...|..++.++.-
T Consensus 254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 000000 1122222222211 23445555555555555666666666666666665 34555566666666
Q ss_pred cCCchhHHHHHHHHHhc
Q 003273 678 AGRWKDVARIRSLMKHT 694 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (834)
.|++++|.+.+++....
T Consensus 323 ~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 66666666666555543
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.0024 Score=56.28 Aligned_cols=113 Identities=11% Similarity=-0.063 Sum_probs=90.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLD 616 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 616 (834)
.++.++|+..|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999876 34433 666777778889999999988753 456777888888887 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCC
Q 003273 617 EAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELES 662 (834)
Q Consensus 617 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 662 (834)
+|.++|++.-..-++..+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988444577788888888887 7899999999999988854
No 213
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.92 E-value=0.0022 Score=51.31 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|..+...+...|+++.|+..++++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5578888888999999999999999999999999999999999999999999999999998764
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.71 E-value=0.0064 Score=64.91 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 003273 576 SGMVDQGLKYFDSMSKEF--GISAR----AEHYACIVDLLGRANRLDEAVELIEGM---------PMEPT-PIIWVALLN 639 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~ 639 (834)
.|++++|..++++..+.. -+-|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355566666555443321 11121 345666666666666666666666554 23355 347888888
Q ss_pred HHHhcCcHHHHHHHHHHHHhc-----CCCCCch
Q 003273 640 GCRIHANVELGELAANRLLEL-----ESEKDGS 667 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 667 (834)
.|..+|++++|+..+++++++ +|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 899999999999999988775 6766544
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.62 E-value=0.011 Score=63.06 Aligned_cols=69 Identities=10% Similarity=-0.041 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCCC
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEKD 665 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~ 665 (834)
+++.+..+|...|++++|+.+++++ +..|+ ..+++.|...|..+|++++|+..+++++++ +|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444555555555555544433 23344 346778888888888888888888888774 67666
Q ss_pred chHH
Q 003273 666 GSYT 669 (834)
Q Consensus 666 ~~~~ 669 (834)
.+-.
T Consensus 411 ~~~~ 414 (429)
T 3qwp_A 411 LIED 414 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.59 E-value=0.15 Score=42.80 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467888888888887662 23445666665555555666666677666543333 346777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
...+-.+. .+.....-.+.....+|..+.-.+++..++.-+|-++.....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77666664 344455667788889999999999999976666667999999999999999999999999999999985
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.57 E-value=0.01 Score=48.31 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|+.+.|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566677777777777665 2223 456 777777778888888888888888888888877765
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.57 E-value=0.053 Score=55.43 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 003273 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603 (834)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 603 (834)
..+...|.++...+...|++++|+..+++++.. .|+...|..+...+...|++++|.+.|+... .+.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChHH
Confidence 446667777666666678888888888888774 4776667666777777888888888887665 4566665554
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.014 Score=51.23 Aligned_cols=66 Identities=9% Similarity=-0.042 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHA---NVELGELAANRLLELE-S-EKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++..+...+.+++.+.+ +.++|+..++.+++.+ | ++...++.|+-.|.+.|++++|++.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 57777778888887777 6678999999999888 7 45778888999999999999999999988764
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.0066 Score=49.46 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=53.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
....+...|+++.|+..++++++.+|+++. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445677889999999999999999999999 99999999999999999999999988753
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.39 E-value=0.00052 Score=71.21 Aligned_cols=163 Identities=8% Similarity=0.007 Sum_probs=113.1
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCC
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 149 (834)
|+.|.+++.+.+.+.+|.+.|=+...| ..|..+|.+..+.|.+++-...+.-.++. .-++..=+.|+-+|++.+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIkA~Dp----s~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIKADDP----SSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 130 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCCCSCC----CSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC
T ss_pred HHHHHHHHHccCchHHHHHHHHhCCCh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC
Confidence 999999999999999999887665544 55889999999999999999866544443 334455568999999999
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 003273 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229 (834)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 229 (834)
++.+-.++. -.||..-...+.+-+...|.++.|.-+|..+..- .-|...+++.|++..|.+.-++
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~--------akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF--------GRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC--------TTTSSSSSSCSGGGSSTTTTTT
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877644332 1466666677888888899999998888776543 3334444555555555544332
Q ss_pred hhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 230 m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
.. +..||-.+-.+|...+.++.+.
T Consensus 196 An-------s~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 196 AN-------STRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp CC-------SSCSHHHHTHHHHHSCTTTTTT
T ss_pred cC-------ChhHHHHHHHHHhCchHHHHHH
Confidence 22 3456666666666555555544
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.24 E-value=0.17 Score=59.43 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred HHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHH
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 479 (834)
...++|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHH
T ss_pred hhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHH
Confidence 3456678888887766543 557788888888888888888888887754 2333333444454444
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
...+-......|.. +.-...|.++|++++|.+++.+
T Consensus 726 ~~~~~~~a~~~~~~-------~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 726 LVTLAKDAETTGKF-------NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCch-------HHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444333321 3334445556666666555543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.64 E-value=0.028 Score=54.99 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=66.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCchhH
Q 003273 616 DEAVELIEGM-PMEPT---PIIWVALLNGCRI-----HANVELGELAANRLLELESEK-DGSYTLLSNIYANA-GRWKDV 684 (834)
Q Consensus 616 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 684 (834)
.+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.+++++++.|+. ..+++.++..|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555444 33455 4567777777777 599999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhcCCccCCc
Q 003273 685 ARIRSLMKHTGVKKRPG 701 (834)
Q Consensus 685 ~~~~~~m~~~~~~~~~~ 701 (834)
.+.+++......+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998876554354
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.52 E-value=0.064 Score=44.10 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGMP---------MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+..|+..+.+.|+++.|...++.+- ..+...++..|..++.+.|+.+.|...++++++++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3344444445555555544444330 1234567888888999999999999999999999999877655443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.84 Score=41.03 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+.-.++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556789999999988877 4677899999999999999999999998655 455555666677776655
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++-+....+ | -++.-...+.-.|+++++.+++.+...-|.. .-..+.+|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 544433221 1 1344444566678888888888777532221 11234466666666665544
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.21 E-value=0.39 Score=56.30 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...
T Consensus 659 f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 34556788899998888776 4567888888889999999999988888754 333444444455555444
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
++-+..... |. ++.-..+|.+.|++++|++++.++.
T Consensus 728 ~~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 433333211 11 2223334445555555555555543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.98 E-value=1.3 Score=39.88 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=72.1
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
+...++|+++.|.++.+.+. +...|..+.......|+++-|.+.|.+... +..++--+...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHH
Confidence 44568899999999988774 677899999999999999999999998865 444444555566665
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 524 (834)
.-..+-......|-. +.-...+.-.|+++++.++|.+..
T Consensus 78 ~L~kla~iA~~~g~~-------n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 78 KLSKMQNIAQTREDF-------GSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCccH-------HHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555554444444432 344444555666666666665543
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.58 E-value=0.37 Score=42.21 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG---MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 622 (834)
.+.+.|.+....|. ++..+-..+..++.+++ ++++|+.+++...+. . .|+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~------------------------ 68 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE------------------------ 68 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH------------------------
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc------------------------
Confidence 34444555444433 45555555555666665 455666666665542 1 110
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 623 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
.+...+-.|.-+|.+.|+++.|.+.++++++++|+|..+.
T Consensus 69 ------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 69 ------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp ------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 0233455566678899999999999999999999876543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.42 E-value=0.16 Score=42.71 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PTPIIWVALLNGCRIHANVEL---GELAANRLLELE-S-EKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++..+-..+.+++.+..+... |+.+++.++..+ | ........|+-.+.+.|++++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555544443333 555555555554 3 2334555666666666666666666666654
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.30 E-value=0.27 Score=39.20 Aligned_cols=67 Identities=19% Similarity=0.116 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 597 ARAEHYACIVDLLGRANR---LDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|+++.|+..++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666666666654443 57777777766 2334 3556666777788888888888888888888887
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.67 E-value=1.3 Score=37.92 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 628 EPTPIIWVALLNGCRIHA---NVELGELAANRLLELESE-KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+..+--.+.+++.+.. +..+++.+++.++..+|. .......|+-.|.+.|++++|++..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555666655544 455778888888887774 3456677888888888888888888888763
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.64 E-value=0.44 Score=46.61 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHhhcCCCC--hhHHHHHHHH-HHHc--C------ChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHh
Q 003273 510 SGDIDTARVVFDNLKQRN--VVSWTSLMTG-YGMH--G------LGDKAHWAFDQMRKEGLAPD---GVTFLVLLYACSH 575 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~~~--~~~~~~li~~-~~~~--g------~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 575 (834)
.|+..+-...+.++.+.+ ...|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344444455555555333 3467776653 3332 3 25677888888888 6787 5578888888888
Q ss_pred -----cCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 003273 576 -----SGMVDQGLKYFDSMSKEFGISA--RAEHYACIVDLLGRA-NRLDEAVELIEGM 625 (834)
Q Consensus 576 -----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 625 (834)
-|+.++|.++|++..+ +.| +..++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4899999999998873 456 377777888888884 8888888888776
No 233
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.31 E-value=7.4 Score=39.02 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF----RQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll 357 (834)
.|.++..-|.+.+++++|++++..-- ..+.+.|+...|-++- +-..+.++++|..+...++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35677788999999999999875532 2355667777666655 4445678889988877777
Q ss_pred Hhhhhhchhhh-hhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh
Q 003273 358 SGCASVGALLL-GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436 (834)
Q Consensus 358 ~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 436 (834)
..+.....-+- -..+...+++..........-|......+...|.+.+++.+|+.-|- ....+....+..|+.-+.+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHH
Confidence 76665443221 23344444444333222344577788889999999999999988883 2112223556555554444
Q ss_pred cC
Q 003273 437 NG 438 (834)
Q Consensus 437 ~g 438 (834)
.+
T Consensus 180 ~~ 181 (336)
T 3lpz_A 180 QD 181 (336)
T ss_dssp TS
T ss_pred hc
Confidence 43
No 234
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.15 E-value=6.8 Score=38.97 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHhHHHHHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV----FRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll 357 (834)
.|.++..-|.+.+++++|.+++..--. .+.+.|+...|-++ ++-..+.++.+|..+...++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 356788889999999999998765332 35566777766665 44455668889988887777
Q ss_pred Hhhhhhchhh-hhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh
Q 003273 358 SGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436 (834)
Q Consensus 358 ~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 436 (834)
..+.....-+ .-..+...+++......+....|+.....+...|.+.|++.+|+.-|-.-. ..|...+..|+.-+.+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~--~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT--HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CccHHHHHHHHHHHHH
Confidence 7665533222 223455555555433322234577888899999999999999988775211 1245555555554444
Q ss_pred c
Q 003273 437 N 437 (834)
Q Consensus 437 ~ 437 (834)
.
T Consensus 178 ~ 178 (312)
T 2wpv_A 178 Q 178 (312)
T ss_dssp H
T ss_pred h
Confidence 3
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.31 Score=55.19 Aligned_cols=52 Identities=15% Similarity=0.002 Sum_probs=49.1
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
-|...|+++.|.++++++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3778899999999999999999999999999999999999999999998877
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.20 E-value=0.65 Score=37.85 Aligned_cols=65 Identities=15% Similarity=-0.004 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELE-------SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.-+-.|...+...|+++.|..-++.+++.. +..+.++..|+.+|.+.|++++|...++.+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998863 234567999999999999999999999998764
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.21 E-value=3 Score=34.99 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHhhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 597 ARAEHYACIVDLLGRANRLDE---AVELIEGMP-ME-P--TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
|+..+-..+.-++.+..+..+ ++.+++..- .. | .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334444444444444444433 444444431 11 2 1223344556788899999999999999999998765443
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.56 E-value=8.7 Score=32.45 Aligned_cols=81 Identities=9% Similarity=-0.050 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
+||++......+-.+. .+....+.-+.....+|+-+.-.+++.++.. ..+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444443332 2333444455566666666666666666433 2456666666666677777777777776666
Q ss_pred hHH
Q 003273 589 MSK 591 (834)
Q Consensus 589 m~~ 591 (834)
+-+
T Consensus 151 AC~ 153 (172)
T 1wy6_A 151 ACK 153 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.35 E-value=1.6 Score=36.78 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PTPIIWVALLNGCRIHA---NVELGELAANRLLELESE-KDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
|+..+--.+.+++.+.. +...|+.+++.+++.+|. ....+..|+-.+.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444555544333 345667777777766663 345566777777777777777777777654
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.02 E-value=2.8 Score=36.17 Aligned_cols=116 Identities=11% Similarity=0.164 Sum_probs=74.8
Q ss_pred CCCCcchhhHHHHHHHHHhCCCc------hhHHHHHHHHHHcCCCCCccc----HHHHHHHH---ccCCCchHHHHHHHH
Q 003273 94 SPSPFSVFWWNALIRRAVRLRLP------DNAFRLFLQMMRRGWHPDEYT----FPFVLKAC---GELPSSRCGSSVHAV 160 (834)
Q Consensus 94 ~~~~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~t----~~~ll~~~---~~~~~~~~a~~~~~~ 160 (834)
.+.++ .+|=..+.-.-+.|++ ++.+++|++.... ++|+... |..+.--| ...++.+.|+++|..
T Consensus 9 ~p~~y--d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 9 MANNP--EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp -CCSH--HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34455 7888888888888998 8888888887764 6775421 22111111 123678888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHH
Q 003273 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213 (834)
Q Consensus 161 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 213 (834)
+++.+ ..=..+|......-.+.|++..|++++......++.+.....+.|.-
T Consensus 86 a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 86 ARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 87663 22267777777777788888888888877665544455555544443
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.53 E-value=21 Score=35.48 Aligned_cols=83 Identities=8% Similarity=0.024 Sum_probs=53.4
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH---GLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 571 (834)
.++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |...++--..-+ .++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-
Confidence 67888899999999999999999988643323455555555544443 443332221111 122
Q ss_pred HHHhcCCHHHHHHHHHHhHHh
Q 003273 572 ACSHSGMVDQGLKYFDSMSKE 592 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~ 592 (834)
-|...|++..|..+|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 355678899999888876543
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.49 E-value=34 Score=37.87 Aligned_cols=114 Identities=9% Similarity=-0.007 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVT----FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
.+.+.|..++....+.+. .+... ...+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 367888888888765432 23222 222222333444345566666654322 2333233334444457789999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 618 AVELIEGMPMEP-T-PIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 618 A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|...|+.|+..+ + ....-=+..+....|+.+.|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998886432 2 11111233355677888888888888875
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.99 E-value=23 Score=35.41 Aligned_cols=82 Identities=7% Similarity=-0.020 Sum_probs=50.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
.++.....+...|.+.+++.+|+..|-.-..+....+..|+..+...+...++ |...-..+ --|.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV-L~yL 198 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV-LPYL 198 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH-HHHH
Confidence 67888899999999999999999998533233335665555544443321111 11111222 2355
Q ss_pred hcCCHHHHHHHHHHhHH
Q 003273 575 HSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~ 591 (834)
..+++..|..+++...+
T Consensus 199 ~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 66788888887766554
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.77 E-value=46 Score=38.57 Aligned_cols=308 Identities=14% Similarity=0.041 Sum_probs=144.0
Q ss_pred HHHcCCCHHHHHHHHHHhHhcC--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHhhhhhc
Q 003273 289 GYSRIGSFEDAFALFKKMRQEN--VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL--EPNVVTLVSLLSGCASVG 364 (834)
Q Consensus 289 ~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~~ 364 (834)
+....|+.++++.+++.....+ -.|.+..-..+.-|....|..+++++++...+...- .-+..+-.....++...|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777776655421 111122233344456666766677777776654321 111001111111221222
Q ss_pred hh------hhhhHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc-chHHHHHHHH
Q 003273 365 AL------LLGKETHCYTIKRVLSVDGSHPDDL--MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA-TWTVMIGSYS 435 (834)
Q Consensus 365 ~~------~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~ 435 (834)
-. +.+...+..++.. . .... ...-+|.-.|.-.|+-+....++..+.+...+.+ -.-.+.-++.
T Consensus 463 la~~GS~~eev~e~L~~~L~d------d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYN------D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHT------C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhc------C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11 1222222222221 1 1111 1223344455566776666666665543222222 2233344555
Q ss_pred hcCChhHHHHHHHhhcccCCCCcCCcccHH---HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH--HHHhc
Q 003273 436 QNGGANDALALFPQMFQQDKLVKPNAFTLS---CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID--MYSRS 510 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~y~k~ 510 (834)
..|+.+.+-.+.+.+.. .......|. .+.-+|+..|+.....+++..+..... ..+-...+. +....
T Consensus 536 ~~g~~e~~~~li~~L~~----~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~----d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 536 NYGRQELADDLITKMLA----SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN----DDVRRAAVIALGFVLL 607 (963)
T ss_dssp TTTCGGGGHHHHHHHHH----CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTS
T ss_pred hCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc----HHHHHHHHHHHHhhcc
Confidence 77888888888777764 111222333 223466777887777777777775422 222233333 33346
Q ss_pred CCHHHHHHHHhhcC-CCChhHH--HHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHH--hcC-------
Q 003273 511 GDIDTARVVFDNLK-QRNVVSW--TSLMTGYGMHGLG-DKAHWAFDQMRKEGLAPDGVTFLVLLYACS--HSG------- 577 (834)
Q Consensus 511 g~~~~A~~~~~~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~g------- 577 (834)
|+.+.+.++++.+. ..|...- .++.-|....|.. .+++.++..+.. .+|..+-...+.++. -.|
T Consensus 608 g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~ 684 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNP 684 (963)
T ss_dssp SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccch
Confidence 66666777776554 2343332 2333344444443 578888888864 455444333333332 222
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
++..-++.+.....+..-.++......+..++...|.
T Consensus 685 rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 685 QVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp THHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 3333334333333211223444445555555554443
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.49 E-value=1.3 Score=38.20 Aligned_cols=53 Identities=6% Similarity=-0.139 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
+|++.|..+|+.+++++..-+..+...+.--.+.|+...|++++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67777788888777765555556666666667788888888888877765543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.48 E-value=5.8 Score=35.00 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGMPME 628 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 628 (834)
+.+.---+..+|.+.|+.++|+..++.+|.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 4455555777788888888888888887643
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.70 E-value=43 Score=35.35 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCCh--h
Q 003273 319 SAVIAGYAQRGHGHEALDVFRQMQFC--GLEPN---VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD--L 391 (834)
Q Consensus 319 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ 391 (834)
..|...|...|++.+|.+++.++... |..+. ...+...++.|...+++..+..+...+....... ..+|+ .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~ 218 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHH
Confidence 45678888999999999999998753 32222 2345566778888999999988888775443221 11222 3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhc
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~ 417 (834)
..+...+..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45566777777788888887776655
No 248
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.54 E-value=55 Score=36.39 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 328 (834)
-++|-.+.|+|++++|.++.++.... +.--...+-..+..|+..
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 36677788999999999988776532 110124677777777643
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.75 E-value=3.2 Score=43.32 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVTL 353 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~ 353 (834)
+...++..+...|++++|...+..+....+- +...|..+|.++.+.|+..+|++.|++..+ .|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3456778888999999999999998877555 777999999999999999999999998754 4999988763
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.51 E-value=51 Score=33.99 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=81.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCChhHHH----
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQ--------RNVVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPDGVTFL---- 567 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~---- 567 (834)
..|...|.+.|+.++...++..... +..-.-..|+..+... +..+.-.++..+.++-. +-+..+|.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4566677777777777777666542 1222344555555442 23344444444444311 01122331
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHH
Q 003273 568 --VLLYACSHSGMVDQGLKYFDSMSKEFGISAR----AEHYACIVDLLGRANRLDEAVELIEGMP-----MEPTPIIWVA 636 (834)
Q Consensus 568 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ 636 (834)
-++..|...|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+.+.. +.+++.+-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 4556677777777777777766654322112 4456666667777777777776665441 1133322211
Q ss_pred H--HHH--HH-hcCcHHHHHHHHHHHH
Q 003273 637 L--LNG--CR-IHANVELGELAANRLL 658 (834)
Q Consensus 637 l--l~~--~~-~~g~~~~a~~~~~~~~ 658 (834)
+ .+| +. ..+++..|-..|-..+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 111 34 5667776666555554
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.04 E-value=8.6 Score=43.52 Aligned_cols=128 Identities=11% Similarity=0.041 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCCCHh----
Q 003273 284 NAMVTGYSRIGS-FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFC------GLEPNVV---- 351 (834)
Q Consensus 284 ~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~pd~~---- 351 (834)
..++..+...++ ++.|..+|+++....+.-+......+|..+.+.++ --+|+.++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444555555 57788888888776332122122233333333322 22455555554421 1111111
Q ss_pred --HH-HHHH----HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003273 352 --TL-VSLL----SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418 (834)
Q Consensus 352 --t~-~~ll----~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 418 (834)
.+ ..+| .-|.+.|+++.|..+-..++. ..|.+-.+|..|...|.+.|+++.|.-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-------~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-------LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 00 1122 224567888888888888877 457778889999999999999999998888886
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.99 E-value=11 Score=33.13 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCCCe-------eeHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH-hH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQE-NVKLNV-------VTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNV-VT 352 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-~t 352 (834)
+-.-+..+...|.++.|+-+.+.+... +..|++ .++..+..++...|++..|...|++.++.. .-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456667778888888777765432 122332 145566788889999999999999875421 11111 11
Q ss_pred HHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccc
Q 003273 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426 (834)
Q Consensus 353 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 426 (834)
..++-.--...+. .....+..+---+..+|.+.++.++|..+++.++.+.++...
T Consensus 103 ~~~~~~~ss~p~s-------------------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 103 RPSTGNSASTPQS-------------------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred cccccccCCCccc-------------------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 1111000000000 023445566666888999999999999999998865555443
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.40 E-value=11 Score=29.73 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=20.9
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 307 (834)
..|++++|..+.+....||.+.|-+|... +.|..+++..-+.++.
T Consensus 52 NrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 52 NRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred cchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 34455555555555555555555544332 3344444444443433
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.74 E-value=11 Score=29.73 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=20.6
Q ss_pred cCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 003273 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ 308 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (834)
.|++++|..+.+....||.+.|-+|.. .+.|..+++..-+.++..
T Consensus 52 rG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 52 QGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp TTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344555554444444455555544433 234444444444444433
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.39 E-value=87 Score=34.61 Aligned_cols=105 Identities=7% Similarity=0.009 Sum_probs=59.4
Q ss_pred hHHHHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCC
Q 003273 71 SHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPS 150 (834)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 150 (834)
+.-+..+.+.+++.....++.. ++.+. ..--....+....|+..+|......+-..| ...+..+..++..+.+.|.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~--~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTT--EAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 3445566677888888887766 43333 333345566677788777777777766555 2233344555555544443
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhc
Q 003273 151 SRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEM 196 (834)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 196 (834)
+. ...++..+ ......|+...|..+...+
T Consensus 152 lt----------------~~~~~~R~-~~al~~~~~~~a~~l~~~l 180 (618)
T 1qsa_A 152 QD----------------PLAYLERI-RLAMKAGNTGLVTVLAGQM 180 (618)
T ss_dssp SC----------------HHHHHHHH-HHHHHTTCHHHHHHHHHTC
T ss_pred CC----------------HHHHHHHH-HHHHHCCCHHHHHHHHHhC
Confidence 32 22233332 3444566777777776665
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.08 E-value=14 Score=29.31 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 544 GDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
.-+..+-++.+....+-|++....+.|.||.+.+++..|.++|+.+..+.+.. ...|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 33566666777777788999999999999999999999999999887654433 456766654
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.52 E-value=4.9 Score=41.92 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh-----cCCccCC
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH-----TGVKKRP 700 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 700 (834)
...++.++...|+.+.+...++.++..+|-+...|..|..+|...|+..+|.+.++...+ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345666677888888999899999999998888999999999999999999988877653 4666544
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.27 E-value=55 Score=33.72 Aligned_cols=93 Identities=13% Similarity=-0.087 Sum_probs=55.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCCChHH----H
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-GISARAEH----Y 602 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~----~ 602 (834)
-++..|...|++.+|++++.++.+.=-+.| ...+..-+..|...+++.++..++....... .+.+++.. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 356667777777777777777766422222 1234555566778888888888887764332 22233322 2
Q ss_pred HHHHHHHh-hcCCHHHHHHHHHhC
Q 003273 603 ACIVDLLG-RANRLDEAVELIEGM 625 (834)
Q Consensus 603 ~~l~~~~~-~~g~~~~A~~~~~~~ 625 (834)
.+-+-++. ..+++.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 23334455 688888887766443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.44 E-value=84 Score=37.94 Aligned_cols=166 Identities=10% Similarity=0.055 Sum_probs=103.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhcc
Q 003273 174 NALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253 (834)
Q Consensus 174 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~ 253 (834)
..++..+.+.|..+.|..+..-.+. +..+--.+..+|...|++++|.++|++... |+..+......
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~-------- 881 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAV-------- 881 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSS--------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhh--------
Confidence 3456666777888888776655544 444445566788899999999999988653 33332221111
Q ss_pred CCchhhhhcCcHHHHHHHHHhcCC--CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCC----eeeHHHHHHHHHh
Q 003273 254 GTWSRGKQCGMMEEAKKVFERMKV--KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN----VVTWSAVIAGYAQ 327 (834)
Q Consensus 254 ~~~~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~ 327 (834)
......+...... .-..-|..++..+-+.+.++.+.++-....+....-+ ...|..+..++..
T Consensus 882 -----------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~ 950 (1139)
T 4fhn_B 882 -----------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 950 (1139)
T ss_dssp -----------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred -----------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh
Confidence 1111111111111 1223477888888889999988887766654321111 1258889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
.|++++|...+-.+.....+ ...+..++..++..+.+
T Consensus 951 l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 951 AGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred hCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 99999999999888765443 34566666666655543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.33 E-value=31 Score=33.18 Aligned_cols=121 Identities=14% Similarity=0.014 Sum_probs=62.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
..+.|..++|++....-++ -.|. ...-..++.-++-.|+++.|.+-++... .+.|+...-..+..-+.++ +
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHH---H
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHH---H
Confidence 4456777777777777666 3453 4445556666777777777777776664 2344432222111111111 1
Q ss_pred HHH-HHHHhC--C--CCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 617 EAV-ELIEGM--P--MEPTPIIWVALLNG--CRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 617 ~A~-~~~~~~--~--~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.++ ++|..- | ......-...|+.+ ....|+.+.|...-.++++.-|..++
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 122211 1 11112223344444 34457888888888888877776554
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.49 E-value=48 Score=40.08 Aligned_cols=143 Identities=10% Similarity=-0.024 Sum_probs=87.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---C----------------
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---R---------------- 526 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~---------------- 526 (834)
.++..|...+..+.++++.... + .++...-.+..+|..+|++++|...|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----N-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----c-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3444555556666555544332 2 4444445667788899999999999987741 0
Q ss_pred -------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--h--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 527 -------NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG--V--TFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 527 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
-..-|..++..+.++|.++.++++-+..++..-.-+. . .|..+..++...|++++|...+-.+.. .
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---T 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---S
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---H
Confidence 0123556677777788888888777776664211111 1 366777778888888888777766642 1
Q ss_pred CCChHHHHHHHHHHhhcCCHHH
Q 003273 596 SARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
.-.......+|..++..|.+++
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 2234556666666666655443
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.78 E-value=40 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
.+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33445556677777777777777777777777543
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.88 E-value=30 Score=29.10 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
+..+-++.+....+-|++......|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555566666777899999999999999999999999999998876443 44556776654
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=64.74 E-value=34 Score=27.16 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=38.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 624 GMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 624 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
.+..-|++.+..+.|.+|++.+|+..|.+.++-+...-.+...+|-.+.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3445689999999999999999999999999988776544455565543
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.72 E-value=66 Score=27.45 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
..--|.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 33445557889999999999999999999987544
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=64.61 E-value=1.8e+02 Score=32.33 Aligned_cols=45 Identities=24% Similarity=0.094 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhC
Q 003273 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217 (834)
Q Consensus 172 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~ 217 (834)
+|- +|-.+.|||.+++|.++.++....--.-...+-..+..|+.+
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 443 555677999999999998776421000113566666777643
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.28 E-value=14 Score=35.50 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 607 DLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..+.+.|.+++|++....- ...| |...-..|..-++..|+++.|.+-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456778888888766543 3333 55566667777888888888888888888888863
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.66 E-value=2.7e+02 Score=32.40 Aligned_cols=222 Identities=8% Similarity=-0.064 Sum_probs=113.5
Q ss_pred HHHHhCCChHHHHHHHHhcCCCC--CC--ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhh
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKN--RD--VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~ 474 (834)
-+....|+.+++..+++...... .+ +..=..+.-|....|..++++.++...+.....+.-+..+-.....++...
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566788888888888765321 11 122223344556667767888888776651110001100111111222222
Q ss_pred hhH------HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-C-CChh-HHHHHHHHHHHcCChH
Q 003273 475 AAL------RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-Q-RNVV-SWTSLMTGYGMHGLGD 545 (834)
Q Consensus 475 ~~~------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~-~~~~-~~~~li~~~~~~g~~~ 545 (834)
|.. +.+...+..++...-........-+|.-.|.-.|+-+....++..+. . .+.+ -.-++.-|+...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 221 23333333333321100011222344455666677777777766544 2 2222 2233334455788988
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHH---HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDG-VTFL---VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
.+..+.+.+... +|+ .-|. .+.-+|+..|+.....+++..+.+ ....++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888762 332 2233 344578888998877778888865 2333343333333344446666656666
Q ss_pred HHhC
Q 003273 622 IEGM 625 (834)
Q Consensus 622 ~~~~ 625 (834)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 6544
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.80 E-value=2e+02 Score=30.13 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCC----hH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-----GVTFLVLLYACSHSGMVDQGLKYFDSMSKE-FGISAR----AE 600 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~ 600 (834)
...|...|...|++.+|..++.++...-...+ ...+...+..|...+++..|..+++++... ....+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 35567788889999999999999875422222 234666677899999999999999987432 122222 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
.|.+++..+...+++.+|-+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788999999999999998877655
No 270
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.34 E-value=71 Score=31.03 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=39.3
Q ss_pred cCcHHHHHHHHHhcCCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 262 CGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
.|..+-...+++..... +.....+.+...+..|+.+-+.-+++.-..-+.. |..-++..+...+..|+ .++.+.
T Consensus 139 ~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~----~~~v~~ 213 (285)
T 3kea_A 139 LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKD----IEMLQA 213 (285)
T ss_dssp TTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTC----HHHHHH
T ss_pred cCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCC----HHHHHH
Confidence 34444444444433322 2213334445555667776666665543332222 33333332333334444 345555
Q ss_pred HHHCCCCCCHhH
Q 003273 341 MQFCGLEPNVVT 352 (834)
Q Consensus 341 m~~~g~~pd~~t 352 (834)
+.+.|..|+...
T Consensus 214 Ll~~gad~~~~~ 225 (285)
T 3kea_A 214 LFKYDINIYSAN 225 (285)
T ss_dssp HTTSCBCSTTTT
T ss_pred HHHcCCCCCCCC
Confidence 666677666543
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.73 E-value=53 Score=34.48 Aligned_cols=96 Identities=10% Similarity=-0.035 Sum_probs=65.1
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCChhH--HH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLKQ------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE---GLAPDGVT--FL 567 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t--~~ 567 (834)
+...+.+.|.++|++++|.+.|.++.. .-+..|-.++..+...+++..+...+++.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 446788889999999999999988762 22446777788888889999998888887542 32333221 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
.-+..+...+++.+|.+.|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 112234567888888888877765443
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.48 E-value=1.3e+02 Score=27.09 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=37.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 575 (834)
++.+-...+.++.+.|+.+....+...+..++...-...+.++...|.. ++...+.++.. .++...-...+.++..
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333344444444444433333333333344544444444555554442 23333333332 2444444444445544
Q ss_pred cCCHHHHHHHHHHh
Q 003273 576 SGMVDQGLKYFDSM 589 (834)
Q Consensus 576 ~g~~~~a~~~~~~m 589 (834)
.|. .++...+..+
T Consensus 165 ~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 165 IGG-ERVRAAMEKL 177 (201)
T ss_dssp HCS-HHHHHHHHHH
T ss_pred hCc-hhHHHHHHHH
Confidence 444 2333333333
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.17 E-value=83 Score=32.93 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHH----H
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY----A 603 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----~ 603 (834)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+..+.+++.....-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788889999999999999999998655554 4567888889999999999999999876443333333222 2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 003273 604 CIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
+-+-.+...+++.+|-+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233455678999988877654
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.69 E-value=84 Score=24.83 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 003273 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 566 (834)
.+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++-..| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3556788888888888888888888877643 46777777777776776654 3444444
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.31 E-value=1.5e+02 Score=28.19 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=9.7
Q ss_pred HHHHhCCChhHHHHHHHh
Q 003273 178 AMYARCDTLSYARQLFDE 195 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~ 195 (834)
...++.|+.+-+..+++.
T Consensus 77 ~~A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 77 LLAAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666655555554
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.40 E-value=89 Score=24.73 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=38.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 003273 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 566 (834)
.+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++-..| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3556788888888888888888888877643 35677777766666665544 3433333
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.43 E-value=1.5e+02 Score=26.81 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=40.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
+++.+-...+..+.+.|+.+....+.+.+..++...-...+.++...|.. ++...+.++.+ .||...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 33444444445555555433333333333345554444455555555543 23344444332 344444444455555
Q ss_pred hcCCHHHHHHHHHHhH
Q 003273 575 HSGMVDQGLKYFDSMS 590 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~ 590 (834)
..+. .++...+..+.
T Consensus 169 ~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCS-HHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHH
Confidence 5544 33334444333
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.01 E-value=1.6e+02 Score=26.88 Aligned_cols=83 Identities=5% Similarity=0.125 Sum_probs=53.5
Q ss_pred HHHHHHHhhcC--CCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 514 DTARVVFDNLK--QRNVV---SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 514 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
+.+.+.|.... +.|+. .|-..+..+ ..++..++.++|..|...|+--. ..-|......+...|++++|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444554444 34443 444444433 24446688888888888887776 5557777777788888888888888
Q ss_pred HhHHhcCCCCC
Q 003273 588 SMSKEFGISAR 598 (834)
Q Consensus 588 ~m~~~~~~~p~ 598 (834)
.-++. +-.|-
T Consensus 140 ~GI~~-~A~P~ 149 (202)
T 3esl_A 140 LGAEN-NCRPY 149 (202)
T ss_dssp HHHHT-TCBSH
T ss_pred HHHHc-CCccH
Confidence 77654 55664
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=48.67 E-value=1.4e+02 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=42.2
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 622 IEGMPMEPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 622 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|...+..|. ..++.+-++.+.+++|+..|...+++++++.|... ..+.|+++...-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 333345554 44777888889999999999999999999998421 234567776666544
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=47.27 E-value=85 Score=26.47 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=39.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 622 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+-.+..-|++.+..+-|.+|++.+|+..|.+++|-+...-.+...+|-.+.
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334455699999999999999999999999999988776543455565543
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.88 E-value=66 Score=32.58 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=42.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCh
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRN---VVSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAPDG 563 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 563 (834)
+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 677888888999999999999998664 2334444455544333 34577777777776655443
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.05 E-value=1.7e+02 Score=26.87 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=8.4
Q ss_pred HHHhCCChhHHHHHHHh
Q 003273 179 MYARCDTLSYARQLFDE 195 (834)
Q Consensus 179 ~~~~~g~~~~A~~~~~~ 195 (834)
..++.|+.+-+..+++.
T Consensus 115 ~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 115 LAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCHHHHHHHHHhc
Confidence 33445555555555443
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.19 E-value=2e+02 Score=26.17 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=68.7
Q ss_pred HHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 003273 617 EAVELIEGMP-MEPTPI---IWVALLNGCRIHANVELGELAANRLLE--LESEKDGSYTLLSNIYANAGRWKDVARIRSL 690 (834)
Q Consensus 617 ~A~~~~~~~~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 690 (834)
.+...|...+ .+.|+. .|-..+..| ..++......+|..+.. ++-.-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444442 334543 555555544 23446678888888766 4566678899999999999999999999998
Q ss_pred HHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 003273 691 MKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYV 744 (834)
Q Consensus 691 m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~ 744 (834)
-.+++.+| ...+.....+...+|...+.+
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 88776543 234555566777788877763
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.08 E-value=2.2e+02 Score=26.07 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=15.0
Q ss_pred HHHHHhCCCchhHHHHHHHHHHcCCCCC
Q 003273 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPD 134 (834)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 134 (834)
+...++.|+.+....+++.+...|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344455666666666655555554443
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.39 E-value=1.4e+02 Score=24.94 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHhH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH--GHEALDVFRQMQFCGLEPNVVT 352 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t 352 (834)
.+.++.-|...|+.++|...++++...... .......+..++-+.+. .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 456788888889999999988887532111 22233344445555432 3567788888877776544433
No 286
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.58 E-value=3.7e+02 Score=27.60 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=10.8
Q ss_pred HHHHHhCCChhHHHHHHHh
Q 003273 177 MAMYARCDTLSYARQLFDE 195 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~ 195 (834)
+...++.|+.+-+..+++.
T Consensus 51 L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3444556666666666654
No 287
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=35.18 E-value=13 Score=23.49 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=11.7
Q ss_pred CCccccc-CCCcCCCCCC
Q 003273 817 SNRFHHF-KEGSCTCKGY 833 (834)
Q Consensus 817 ~~~~h~~-~~g~csc~~~ 833 (834)
|=.=|.. .+|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3344555 5899999976
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.79 E-value=2.4e+02 Score=24.91 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 003273 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350 (834)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 350 (834)
++.+..+.........-.++++.+.+.|..++.
T Consensus 141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 344444433332233345666666666665553
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.24 E-value=4.6e+02 Score=27.97 Aligned_cols=128 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCC------chHHHHHHhhCCCchhHHHHhcccCCCCcchhhHHHH--------HHHHHhCCCchhHH
Q 003273 55 LIHQQIIVQNLTHVP------PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNAL--------IRRAVRLRLPDNAF 120 (834)
Q Consensus 55 ~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~l--------i~~~~~~g~~~~a~ 120 (834)
.++...+..-+.+|. +|.|++.|...+.++.|..+.++...|.. ..=|.. .+.+.-.+++.+|.
T Consensus 213 ~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~ 290 (523)
T 4b4t_S 213 TMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHT--DVSSSLEARYFFYLSKINAIQLDYSTAN 290 (523)
T ss_dssp HHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHH
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhH------------HHHHHHHHHhCCChhH
Q 003273 121 RLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFV------------CNALMAMYARCDTLSY 188 (834)
Q Consensus 121 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------~~~Li~~~~~~g~~~~ 188 (834)
+.+....+. .+++.......+.++- .-+.-.++ .|--|+... |..|..++ +.|++..
T Consensus 291 ~~L~~A~rk-ap~~~~a~gfr~~a~K--------~lI~V~LL-lG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~ 359 (523)
T 4b4t_S 291 EYIIAAIRK-APHNSKSLGFLQQSNK--------LHCCIQLL-MGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKK 359 (523)
T ss_dssp HHHHHHTSS-CSCSSSCSHHHHHHHH--------HHHHHHHH-HTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHh-CCcchhhhhHHHHHHH--------HHHhHHhh-cCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHH
Q ss_pred HHHHHHh
Q 003273 189 ARQLFDE 195 (834)
Q Consensus 189 A~~~~~~ 195 (834)
-..+++.
T Consensus 360 F~~~L~~ 366 (523)
T 4b4t_S 360 FTSTITK 366 (523)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.66 E-value=2.5e+02 Score=24.20 Aligned_cols=48 Identities=6% Similarity=-0.042 Sum_probs=38.2
Q ss_pred HHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 650 GELAANRLLEL--ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 650 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
...+|+.+... .-.-+..|...+..+...|++.+|.++++.-.+++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 66777777664 4556778899999999999999999999888776554
No 291
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.43 E-value=2.3e+02 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 615 LDEAVELIEGMPMEPTPI-------IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
++.|+.+++.+..+-|.. +--..+..|.+.|.+++|++++++++.-.|.+...-.-|..+-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 567777887775443321 1123344599999999999999999988776655444444443
No 292
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.98 E-value=19 Score=22.91 Aligned_cols=13 Identities=23% Similarity=0.861 Sum_probs=10.5
Q ss_pred cccccCCcchhHH
Q 003273 790 NLRICGDCHSAIT 802 (834)
Q Consensus 790 nl~~~~~~h~~~~ 802 (834)
+-|+|.+|+.-+.
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 7899999996543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.62 E-value=1.3e+02 Score=26.06 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHhH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH--GHEALDVFRQMQFCGLEPNVVT 352 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t 352 (834)
.+.++.-|...|+.++|...++++...... ......++..++-+.+. .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 466788888888999998888887532111 22233344445554322 3457777888877665444433
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.35 E-value=2e+02 Score=23.92 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=41.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNV---VSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 562 (834)
+.++.-|...|+.++|.+.++++..|.- +...++..++-+.+. .+....++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 5678888889999999999999876522 233444445544432 3567777777777665443
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.01 E-value=3.2e+02 Score=24.51 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=33.1
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
+++.+-...+.++++.|..+....+...+..++...-...+.++.+.|. .++...+.++.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444445555555555554333333333345666655666666666665 456666666655
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.63 E-value=67 Score=31.75 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=20.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 427 WTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 427 ~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
.+.++.-|...|+.++|.+.++++..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~ 194 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV 194 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 35677788888888888888888753
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.89 E-value=1.7e+02 Score=29.56 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 427 WTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 427 ~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
.+.++.-|...|+.++|.+.++++..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC
Confidence 35677777778888888888877753
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.57 E-value=3.2e+02 Score=23.87 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=37.9
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 650 GELAANRLLE--LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 650 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
...+|..+.. +.-.-+..|...+..|...|++.+|.+|++.-.+++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5567777665 35556778999999999999999999999988877654
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.53 E-value=3.1e+02 Score=23.62 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 545 DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
+++.++|..|...|+--. +.-|......+...|++++|.++|+.-++. +-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 347888888888887776 555677777788888888888888877654 55663
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.18 E-value=3.7e+02 Score=24.41 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=9.2
Q ss_pred HHHHHhhCCCchhHHHHhc
Q 003273 73 LIAAYVSHNAPSPALSLLQ 91 (834)
Q Consensus 73 l~~~~~~~g~~~~A~~~f~ 91 (834)
.+...+..|+.+....+++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444445555555444444
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.89 E-value=1.3e+02 Score=29.69 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNV---VSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 562 (834)
+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+....++..+...|+-+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 5678888889999999999999986622 233444444444333 3456677777777665443
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.75 E-value=2e+02 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.++.......+..+.|.|+-++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34445555566777777777777777643
No 303
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.35 E-value=4.5e+02 Score=24.78 Aligned_cols=50 Identities=12% Similarity=-0.060 Sum_probs=23.3
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC
Q 003273 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330 (834)
Q Consensus 277 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 330 (834)
.+|..+-...+..+.+.|.. ++...+.++... ++...-...+.++.+.|.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD---KNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC---CCHHHHHHHHHHHHHhcc
Confidence 45555545555556655543 344444444332 233333444455555553
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.11 E-value=4.2e+02 Score=26.25 Aligned_cols=23 Identities=4% Similarity=-0.234 Sum_probs=11.3
Q ss_pred HccCCCchHHHHHHHHHHHhCCC
Q 003273 145 CGELPSSRCGSSVHAVICSSGFD 167 (834)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~ 167 (834)
.+..|+.+-...+++.....|..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCC
Confidence 33455655555555544443433
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.98 E-value=1.9e+02 Score=24.92 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=39.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNV---VSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAP 561 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 561 (834)
+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 6678888889999999999999876522 233444444444322 345667777777666444
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.67 E-value=4.1e+02 Score=23.23 Aligned_cols=52 Identities=4% Similarity=0.041 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 546 KAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
++.++|..|...|+--. +.-|......+...|++.+|.++|..-++. +-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 47778888888887776 555667777778888888888888877654 55664
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.98 E-value=6.7e+02 Score=25.50 Aligned_cols=18 Identities=0% Similarity=0.261 Sum_probs=9.5
Q ss_pred HHHHhCCChHHHHHHHHh
Q 003273 399 DMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~ 416 (834)
..-++.|+.+-..-+++.
T Consensus 316 ~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp HHHHHSSCSHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHhc
Confidence 334455666655555543
No 308
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=20.78 E-value=27 Score=29.46 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCCcEEEee----cccccCCcchhHHHHhhhhceEEEEEeCCcccccCCCcCC
Q 003273 781 PGTPIRITK----NLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCT 829 (834)
Q Consensus 781 ~~~~~~~~~----nl~~~~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~cs 829 (834)
....+||+. +.++|-+| .++..-..-.+.-+||+|+++.|-
T Consensus 43 ~~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 43 ASSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CCcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 355677774 57777777 333333444689999999999874
No 309
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.48 E-value=3.9e+02 Score=23.53 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=56.3
Q ss_pred hcCcHHHHHHHHHhcCCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee---HHHHHHHHHh-cCChhHHH
Q 003273 261 QCGMMEEAKKVFERMKVK-DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT---WSAVIAGYAQ-RGHGHEAL 335 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~~A~ 335 (834)
+.|+++....++...... +.....+.+...+..|+.+.-.++.+-+.+.|..+|... ++.|..++.. ..+.....
T Consensus 15 ~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~ 94 (186)
T 3t8k_A 15 MLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94 (186)
T ss_dssp HHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHH
Confidence 678888877777665322 212233556666777877777778888888888776543 3444443332 23344556
Q ss_pred HHHHHHHHCCCCCCH
Q 003273 336 DVFRQMQFCGLEPNV 350 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~ 350 (834)
++.+.+++.|..++.
T Consensus 95 ~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 95 ELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHTTCCSSS
T ss_pred HHHHHHHHCCCCCCc
Confidence 777778888876664
No 310
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=20.17 E-value=22 Score=25.58 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.3
Q ss_pred eEEEEEeCCcccccCCCcCCC
Q 003273 810 HEIILRDSNRFHHFKEGSCTC 830 (834)
Q Consensus 810 ~~~~~~d~~~~h~~~~g~csc 830 (834)
..|=+.|....|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 456788999999999998654
Done!