Query 003275
Match_columns 834
No_of_seqs 465 out of 4102
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 2.5E-92 8.7E-97 857.9 54.2 712 2-773 58-815 (823)
2 4gpa_A Glutamate receptor 4; P 100.0 1.2E-41 4.3E-46 375.8 31.3 314 2-337 67-382 (389)
3 3o21_A Glutamate receptor 3; p 100.0 3.5E-41 1.2E-45 370.7 31.8 309 2-333 67-380 (389)
4 3hsy_A Glutamate receptor 2; l 100.0 1.8E-41 6.2E-46 371.8 27.3 309 2-332 58-373 (376)
5 3saj_A Glutamate receptor 1; r 100.0 3.6E-40 1.2E-44 362.7 29.2 312 2-337 65-381 (384)
6 4f11_A Gamma-aminobutyric acid 100.0 1.2E-39 4.2E-44 364.9 27.9 325 3-366 84-427 (433)
7 3om0_A Glutamate receptor, ion 100.0 1E-39 3.6E-44 360.5 27.0 309 2-334 68-382 (393)
8 3h6g_A Glutamate receptor, ion 100.0 2.5E-39 8.6E-44 357.8 28.8 307 2-335 69-385 (395)
9 1jdp_A NPR-C, atrial natriuret 100.0 1.3E-38 4.4E-43 357.4 32.7 299 3-329 83-397 (441)
10 3qel_B Glutamate [NMDA] recept 100.0 1.8E-39 6E-44 352.3 19.4 282 3-332 62-356 (364)
11 3qek_A NMDA glutamate receptor 100.0 2.6E-38 8.8E-43 348.1 27.5 281 2-326 63-369 (384)
12 1dp4_A Atrial natriuretic pept 100.0 4E-38 1.4E-42 353.0 28.9 321 3-368 76-423 (435)
13 2e4u_A Metabotropic glutamate 100.0 2.4E-37 8.4E-42 356.1 34.3 324 2-368 115-485 (555)
14 3sm9_A Mglur3, metabotropic gl 100.0 8.7E-38 3E-42 352.0 29.7 301 3-325 115-462 (479)
15 3ks9_A Mglur1, metabotropic gl 100.0 1.3E-37 4.3E-42 352.3 30.7 326 2-366 126-496 (496)
16 3mq4_A Mglur7, metabotropic gl 100.0 4.5E-37 1.5E-41 347.2 21.3 303 3-325 116-467 (481)
17 3i45_A Twin-arginine transloca 100.0 3.9E-30 1.3E-34 283.3 23.0 292 3-338 72-371 (387)
18 3td9_A Branched chain amino ac 100.0 1.1E-29 3.8E-34 277.5 25.1 279 3-328 80-364 (366)
19 4f06_A Extracellular ligand-bi 100.0 5.5E-29 1.9E-33 272.1 24.0 274 2-314 70-346 (371)
20 3i09_A Periplasmic branched-ch 100.0 1E-28 3.5E-33 270.7 24.0 271 3-317 70-342 (375)
21 3h5l_A Putative branched-chain 100.0 3.6E-29 1.2E-33 278.6 19.9 285 2-324 81-394 (419)
22 4evq_A Putative ABC transporte 100.0 4.3E-28 1.5E-32 265.8 27.3 281 3-327 81-364 (375)
23 3ipc_A ABC transporter, substr 100.0 1.2E-28 4.1E-33 268.2 22.2 280 3-327 68-352 (356)
24 3n0w_A ABC branched chain amin 100.0 9.2E-29 3.1E-33 271.5 20.6 271 3-317 72-346 (379)
25 1usg_A Leucine-specific bindin 100.0 2.1E-28 7.1E-33 265.2 23.2 275 3-321 68-345 (346)
26 3hut_A Putative branched-chain 100.0 3.4E-28 1.2E-32 264.8 24.7 281 2-327 70-354 (358)
27 4eyg_A Twin-arginine transloca 100.0 6.6E-28 2.3E-32 263.6 24.3 281 2-326 70-359 (368)
28 3lkb_A Probable branched-chain 99.9 2.8E-27 9.7E-32 260.9 19.9 287 3-331 74-379 (392)
29 3lop_A Substrate binding perip 99.9 1.3E-26 4.5E-31 252.8 23.0 273 3-318 72-353 (364)
30 3eaf_A ABC transporter, substr 99.9 2.1E-26 7.3E-31 253.7 24.9 284 2-328 74-373 (391)
31 3n0x_A Possible substrate bind 99.9 4.6E-27 1.6E-31 257.3 18.0 269 2-317 71-348 (374)
32 1yae_A Glutamate receptor, ion 99.9 4.8E-27 1.6E-31 250.3 16.6 273 371-739 10-305 (312)
33 3sg0_A Extracellular ligand-bi 99.9 1.5E-26 5.1E-31 254.6 20.6 283 3-321 88-385 (386)
34 3snr_A Extracellular ligand-bi 99.9 7.5E-26 2.6E-30 246.6 23.5 281 3-321 68-361 (362)
35 4gnr_A ABC transporter substra 99.9 1.2E-25 4E-30 244.2 24.2 273 2-324 73-351 (353)
36 1pea_A Amidase operon; gene re 99.9 8E-25 2.7E-29 240.5 27.1 281 3-324 74-357 (385)
37 3g3k_A Glutamate receptor, ion 99.9 3.8E-25 1.3E-29 228.9 16.6 233 372-723 2-258 (259)
38 2a5s_A N-methyl-D-aspartate re 99.9 9.3E-26 3.2E-30 236.6 11.1 247 370-723 25-283 (284)
39 1pb7_A N-methyl-D-aspartate re 99.9 4.4E-25 1.5E-29 232.3 14.7 234 374-724 41-292 (292)
40 2rc8_A Glutamate [NMDA] recept 99.9 2.5E-24 8.5E-29 227.0 15.7 216 398-723 67-293 (294)
41 4gvo_A LMO2349 protein; struct 99.9 2.4E-24 8.2E-29 220.5 13.6 224 372-718 7-235 (243)
42 4h5g_A Amino acid ABC superfam 99.9 5.3E-24 1.8E-28 217.9 15.2 220 374-718 12-237 (243)
43 1mqi_A Glutamate receptor 2; G 99.9 4.9E-23 1.7E-27 213.5 19.1 232 373-723 3-262 (263)
44 2v3u_A Glutamate receptor delt 99.9 8.4E-23 2.9E-27 211.9 18.0 233 372-723 1-264 (265)
45 3kzg_A Arginine 3RD transport 99.9 1.1E-22 3.8E-27 207.2 17.9 220 374-720 3-232 (237)
46 3i6v_A Periplasmic His/Glu/Gln 99.9 1.1E-22 3.7E-27 206.5 16.0 220 373-726 4-225 (232)
47 4f3p_A Glutamine-binding perip 99.9 4.2E-22 1.4E-26 204.6 19.4 223 371-720 21-244 (249)
48 3hv1_A Polar amino acid ABC up 99.9 3.4E-22 1.2E-26 207.8 18.9 227 373-724 20-254 (268)
49 3del_B Arginine binding protei 99.9 4.1E-22 1.4E-26 203.6 18.8 222 373-724 10-238 (242)
50 3k4u_A Binding component of AB 99.9 2.8E-22 9.5E-27 205.4 17.3 224 373-719 4-229 (245)
51 3kbr_A Cyclohexadienyl dehydra 99.9 4.9E-22 1.7E-26 202.6 14.4 221 373-718 14-237 (239)
52 3tql_A Arginine-binding protei 99.9 2.6E-21 8.9E-26 195.3 18.8 219 374-717 2-227 (227)
53 1ii5_A SLR1257 protein; membra 99.9 4.4E-21 1.5E-25 194.5 19.9 220 373-719 3-227 (233)
54 4dz1_A DALS D-alanine transpor 99.9 6.2E-21 2.1E-25 197.1 19.5 224 372-719 27-254 (259)
55 3h7m_A Sensor protein; histidi 99.9 7.4E-21 2.5E-25 193.0 19.7 220 372-718 9-230 (234)
56 4eq9_A ABC transporter substra 99.9 4E-21 1.4E-25 196.6 16.3 226 373-723 7-240 (246)
57 1lst_A Lysine, arginine, ornit 99.9 5.9E-21 2E-25 194.5 17.2 223 373-719 3-233 (239)
58 3mpk_A Virulence sensor protei 99.9 9.9E-21 3.4E-25 196.5 18.2 220 373-719 31-253 (267)
59 1wdn_A GLNBP, glutamine bindin 99.9 1.4E-20 4.9E-25 189.6 18.7 218 374-718 3-222 (226)
60 3ckm_A YRAM (HI1655), LPOA; pe 99.8 1.2E-20 4.2E-25 201.9 17.0 261 2-322 56-320 (327)
61 2h4a_A YRAM (HI1655); perplasm 99.8 1.7E-20 6E-25 198.4 17.2 259 2-321 54-317 (325)
62 2y7i_A STM4351; arginine-bindi 99.8 3.6E-20 1.2E-24 187.2 17.5 217 373-718 5-228 (229)
63 2iee_A ORF2, probable ABC tran 99.8 1E-20 3.6E-25 196.8 13.8 221 373-721 20-250 (271)
64 2pvu_A ARTJ; basic amino acid 99.8 1.6E-19 5.4E-24 188.0 19.5 221 372-719 40-263 (272)
65 2pyy_A Ionotropic glutamate re 99.8 8.2E-20 2.8E-24 184.3 16.6 219 374-718 3-222 (228)
66 2q88_A EHUB, putative ABC tran 99.8 8.4E-20 2.9E-24 188.3 16.1 222 373-717 12-239 (257)
67 3qax_A Probable ABC transporte 99.8 1.7E-19 5.9E-24 187.1 17.9 218 373-719 30-254 (268)
68 2vha_A Periplasmic binding tra 99.8 4.6E-19 1.6E-23 186.0 19.1 224 373-719 16-249 (287)
69 1xt8_A Putative amino-acid tra 99.8 2.1E-19 7.4E-24 189.1 16.6 218 373-718 43-265 (292)
70 2yln_A Putative ABC transporte 99.8 2.5E-19 8.7E-24 187.5 16.2 218 373-719 56-278 (283)
71 4i62_A Amino acid ABC transpor 99.8 2.3E-19 8E-24 186.2 15.8 220 373-718 38-264 (269)
72 2yjp_A Putative ABC transporte 99.8 2.9E-19 9.9E-24 188.0 16.3 217 374-718 55-276 (291)
73 2v25_A Major cell-binding fact 99.7 2.3E-17 7.9E-22 169.9 13.5 215 373-717 37-258 (259)
74 3n5l_A Binding protein compone 98.8 4E-08 1.4E-12 103.2 14.3 214 374-716 4-241 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 5.4E-08 1.9E-12 102.4 13.4 216 372-716 12-250 (321)
76 2ozz_A Hypothetical protein YH 98.6 4.2E-07 1.4E-11 88.8 13.5 185 396-718 27-224 (231)
77 2x26_A Periplasmic aliphatic s 98.0 2.7E-05 9.3E-10 81.5 12.9 121 590-718 96-232 (308)
78 3ksx_A Nitrate transport prote 97.9 0.00025 8.4E-09 74.8 17.0 93 590-689 122-219 (324)
79 2f5x_A BUGD; periplasmic bindi 97.7 0.00076 2.6E-08 70.0 16.9 123 589-716 121-275 (312)
80 3un6_A Hypothetical protein sa 97.7 0.00019 6.6E-09 76.2 12.5 122 590-718 144-283 (341)
81 3uif_A Sulfonate ABC transport 97.7 0.00033 1.1E-08 74.6 13.9 106 590-703 110-228 (348)
82 2qpq_A Protein BUG27; alpha/be 97.7 0.00078 2.7E-08 69.6 15.9 123 589-716 112-266 (301)
83 2dvz_A BUGE, putative exported 97.6 0.00065 2.2E-08 70.6 14.9 123 589-716 125-279 (314)
84 3qsl_A Putative exported prote 97.5 0.0013 4.6E-08 69.6 15.1 136 411-665 59-204 (346)
85 3ix1_A N-formyl-4-amino-5-amin 97.3 0.001 3.4E-08 69.2 11.3 78 397-482 15-96 (302)
86 2h0a_A TTHA0807, transcription 96.8 0.0049 1.7E-07 62.8 10.4 151 3-163 54-213 (276)
87 2h3h_A Sugar ABC transporter, 96.7 0.019 6.3E-07 59.8 14.8 154 3-165 56-216 (313)
88 4ddd_A Immunogenic protein; ss 96.7 0.005 1.7E-07 64.6 10.0 60 590-655 137-202 (327)
89 3brq_A HTH-type transcriptiona 96.6 0.0062 2.1E-07 62.7 10.2 155 3-165 76-236 (296)
90 1dbq_A Purine repressor; trans 96.5 0.02 6.7E-07 58.7 12.5 156 3-165 62-223 (289)
91 2qu7_A Putative transcriptiona 96.4 0.0049 1.7E-07 63.3 7.3 150 3-162 62-219 (288)
92 3jv9_A OXYR, transcriptional r 96.3 0.12 4.1E-06 49.7 16.4 83 374-482 4-86 (219)
93 3ksm_A ABC-type sugar transpor 96.2 0.055 1.9E-06 54.7 14.0 152 5-165 60-221 (276)
94 2x7q_A Ca3427, possible thiami 96.2 0.038 1.3E-06 57.6 13.0 90 590-689 111-210 (321)
95 3clk_A Transcription regulator 96.2 0.016 5.6E-07 59.4 9.9 149 3-160 64-215 (290)
96 3d8u_A PURR transcriptional re 96.2 0.029 1E-06 56.9 11.7 136 21-163 75-214 (275)
97 2k1e_A Water soluble analogue 96.1 0.0027 9.4E-08 53.6 2.7 77 505-585 18-96 (103)
98 4ab5_A Transcriptional regulat 96.1 0.13 4.3E-06 49.7 15.4 83 374-482 8-90 (222)
99 3rot_A ABC sugar transporter, 96.0 0.026 8.8E-07 58.1 10.7 149 3-157 60-215 (297)
100 3gv0_A Transcriptional regulat 96.0 0.073 2.5E-06 54.4 13.9 135 21-162 82-220 (288)
101 3c3k_A Alanine racemase; struc 96.0 0.041 1.4E-06 56.2 12.0 148 3-163 63-217 (285)
102 2rjo_A Twin-arginine transloca 96.0 0.098 3.4E-06 54.7 15.1 148 5-155 64-222 (332)
103 3bbl_A Regulatory protein of L 96.0 0.033 1.1E-06 56.9 11.1 155 3-165 63-224 (287)
104 3l49_A ABC sugar (ribose) tran 96.0 0.06 2E-06 55.0 13.0 144 4-155 61-216 (291)
105 2rgy_A Transcriptional regulat 96.0 0.021 7.3E-07 58.5 9.6 155 3-165 66-225 (290)
106 3d02_A Putative LACI-type tran 95.9 0.12 4E-06 53.2 15.3 146 3-155 60-214 (303)
107 3k4h_A Putative transcriptiona 95.9 0.031 1.1E-06 57.3 10.6 151 3-160 68-222 (292)
108 2o20_A Catabolite control prot 95.9 0.026 8.7E-07 59.3 10.1 153 3-163 118-272 (332)
109 2hsg_A Glucose-resistance amyl 95.9 0.019 6.5E-07 60.3 9.1 155 3-165 115-275 (332)
110 3g85_A Transcriptional regulat 95.9 0.044 1.5E-06 56.0 11.7 151 3-163 67-221 (289)
111 3cs3_A Sugar-binding transcrip 95.9 0.074 2.5E-06 53.9 13.2 132 22-163 74-210 (277)
112 3dbi_A Sugar-binding transcrip 95.8 0.031 1.1E-06 58.8 10.5 156 3-165 118-278 (338)
113 2fvy_A D-galactose-binding per 95.8 0.087 3E-06 54.3 13.8 150 3-153 58-226 (309)
114 3gyb_A Transcriptional regulat 95.8 0.021 7.1E-07 58.2 8.7 148 3-162 59-208 (280)
115 3ho7_A OXYR; beta-alpha-barrel 95.8 0.11 3.9E-06 50.5 13.9 83 374-482 11-93 (232)
116 2fep_A Catabolite control prot 95.8 0.048 1.6E-06 55.8 11.5 155 3-165 71-231 (289)
117 3brs_A Periplasmic binding pro 95.8 0.086 2.9E-06 53.8 13.2 154 3-165 64-224 (289)
118 1tjy_A Sugar transport protein 95.8 0.1 3.4E-06 54.2 13.8 154 3-165 59-222 (316)
119 2x7x_A Sensor protein; transfe 95.7 0.1 3.6E-06 54.3 13.9 154 3-165 61-222 (325)
120 2g29_A Nitrate transport prote 95.6 0.1 3.5E-06 56.6 13.8 104 595-705 151-272 (417)
121 3h75_A Periplasmic sugar-bindi 95.6 0.12 4.2E-06 54.4 14.0 160 3-163 61-238 (350)
122 2fn9_A Ribose ABC transporter, 95.4 0.11 3.6E-06 53.1 12.4 144 3-154 57-215 (290)
123 2ih3_C Voltage-gated potassium 95.4 0.01 3.6E-07 51.7 3.9 74 507-584 41-116 (122)
124 3g1w_A Sugar ABC transporter; 95.4 0.18 6.1E-06 51.9 14.0 155 4-165 61-221 (305)
125 1qpz_A PURA, protein (purine n 95.3 0.12 4.1E-06 54.3 12.6 134 26-165 136-274 (340)
126 3gbv_A Putative LACI-family tr 95.3 0.063 2.2E-06 55.2 10.2 152 3-165 68-232 (304)
127 2iks_A DNA-binding transcripti 95.2 0.066 2.3E-06 54.8 10.2 154 3-165 75-233 (293)
128 3hcw_A Maltose operon transcri 95.2 0.16 5.5E-06 52.0 13.0 152 3-163 67-225 (295)
129 1zbm_A Hypothetical protein AF 94.9 0.07 2.4E-06 54.3 9.2 101 595-706 99-210 (280)
130 2vk2_A YTFQ, ABC transporter p 94.9 0.22 7.6E-06 51.2 13.0 153 3-160 57-221 (306)
131 3l6u_A ABC-type sugar transpor 94.9 0.27 9.2E-06 50.1 13.6 144 4-155 64-220 (293)
132 3k9c_A Transcriptional regulat 94.9 0.18 6.1E-06 51.4 12.1 154 2-165 64-221 (289)
133 3o74_A Fructose transport syst 94.9 0.16 5.6E-06 51.0 11.7 153 4-165 58-215 (272)
134 1us5_A Putative GLUR0 ligand b 94.9 0.44 1.5E-05 49.1 15.3 60 590-655 122-187 (314)
135 3qk7_A Transcriptional regulat 94.8 0.14 4.6E-06 52.5 11.1 139 20-165 80-223 (294)
136 3o1i_D Periplasmic protein TOR 94.8 0.12 4.2E-06 53.0 10.7 147 4-155 63-218 (304)
137 3eff_K Voltage-gated potassium 94.8 0.024 8.2E-07 50.8 4.5 72 508-583 21-94 (139)
138 3ctp_A Periplasmic binding pro 94.8 0.036 1.2E-06 58.0 6.6 147 3-163 115-264 (330)
139 2a9h_A Voltage-gated potassium 94.7 0.016 5.4E-07 52.9 3.2 76 507-586 64-141 (155)
140 2ioy_A Periplasmic sugar-bindi 94.6 0.76 2.6E-05 46.4 16.1 153 3-165 56-216 (283)
141 3kke_A LACI family transcripti 94.5 0.15 5.2E-06 52.4 10.6 147 3-159 70-226 (303)
142 3kjx_A Transcriptional regulat 94.4 0.12 4.2E-06 54.3 9.7 138 19-163 138-280 (344)
143 3egc_A Putative ribose operon 94.3 0.08 2.7E-06 54.1 7.8 155 3-165 63-222 (291)
144 3oxn_A Putative transcriptiona 94.2 1.3 4.4E-05 43.2 16.3 84 373-482 18-101 (241)
145 3jy6_A Transcriptional regulat 94.2 0.34 1.2E-05 48.9 12.2 149 3-163 62-214 (276)
146 3ixl_A Amdase, arylmalonate de 93.9 0.45 1.5E-05 46.9 11.8 81 60-143 105-194 (240)
147 1jx6_A LUXP protein; protein-l 93.9 0.21 7.2E-06 52.3 10.2 149 3-154 103-258 (342)
148 2hxr_A HTH-type transcriptiona 93.8 3.5 0.00012 39.8 18.7 83 374-482 30-112 (238)
149 3lft_A Uncharacterized protein 93.8 0.57 2E-05 47.8 13.1 142 2-154 60-210 (295)
150 2dri_A D-ribose-binding protei 93.7 1 3.5E-05 45.1 14.7 154 2-165 55-215 (271)
151 3bil_A Probable LACI-family tr 93.6 0.32 1.1E-05 51.1 11.1 154 3-165 121-277 (348)
152 4h33_A LMO2059 protein; bilaye 93.3 0.065 2.2E-06 47.7 4.2 54 530-583 42-97 (137)
153 1byk_A Protein (trehalose oper 93.2 0.49 1.7E-05 47.0 11.3 128 24-165 75-205 (255)
154 3e3m_A Transcriptional regulat 93.2 0.55 1.9E-05 49.4 12.2 137 20-163 141-283 (355)
155 3fzv_A Probable transcriptiona 93.2 2 6.9E-05 43.6 16.2 83 374-482 95-178 (306)
156 1i6a_A OXYR, hydrogen peroxide 93.2 0.31 1.1E-05 46.9 9.4 83 374-482 5-87 (219)
157 4fe7_A Xylose operon regulator 93.1 0.53 1.8E-05 50.8 12.1 157 3-165 75-239 (412)
158 2qh8_A Uncharacterized protein 93.1 0.38 1.3E-05 49.3 10.4 138 3-151 68-214 (302)
159 3m9w_A D-xylose-binding peripl 93.0 0.7 2.4E-05 47.5 12.4 145 4-155 58-213 (313)
160 2ql3_A Probable transcriptiona 93.0 3.4 0.00012 38.9 16.6 83 374-482 5-87 (209)
161 2i49_A Bicarbonate transporter 92.5 0.53 1.8E-05 51.0 10.9 106 594-705 153-280 (429)
162 2y7p_A LYSR-type regulatory pr 92.5 3.2 0.00011 39.6 15.7 84 373-482 7-90 (218)
163 8abp_A L-arabinose-binding pro 92.4 0.42 1.4E-05 49.0 9.6 161 3-165 56-232 (306)
164 3tb6_A Arabinose metabolism tr 92.3 0.23 7.9E-06 50.7 7.4 139 18-163 89-234 (298)
165 1gud_A ALBP, D-allose-binding 92.3 3.1 0.00011 41.9 15.9 159 3-165 58-227 (288)
166 3h5o_A Transcriptional regulat 92.2 0.43 1.5E-05 49.8 9.6 136 20-163 133-272 (339)
167 3e61_A Putative transcriptiona 92.2 0.28 9.5E-06 49.5 7.8 128 23-163 81-210 (277)
168 2fyi_A HTH-type transcriptiona 92.2 7.6 0.00026 37.1 18.2 84 374-482 14-97 (228)
169 3pjs_K KCSA, voltage-gated pot 92.2 0.014 4.9E-07 54.1 -1.8 71 510-584 50-122 (166)
170 1ixc_A CBNR, LYSR-type regulat 92.1 6.4 0.00022 39.4 18.3 83 374-482 91-173 (294)
171 2esn_A Probable transcriptiona 92.1 4.1 0.00014 41.3 16.9 83 374-482 101-186 (310)
172 2zzv_A ABC transporter, solute 92.1 0.65 2.2E-05 49.0 10.8 59 589-659 164-222 (361)
173 3huu_A Transcription regulator 92.0 0.43 1.5E-05 49.0 9.1 150 3-165 82-238 (305)
174 1jye_A Lactose operon represso 91.6 1.1 3.7E-05 47.0 11.9 149 3-163 117-271 (349)
175 3ldc_A Calcium-gated potassium 91.3 0.14 4.8E-06 40.8 3.4 51 531-581 28-80 (82)
176 2fqx_A Membrane lipoprotein TM 91.1 1.4 4.9E-05 45.4 12.0 152 3-163 61-220 (318)
177 4esw_A Pyrimidine biosynthesis 91.0 0.91 3.1E-05 47.5 10.5 66 589-661 101-169 (342)
178 3jvd_A Transcriptional regulat 90.9 0.99 3.4E-05 46.9 10.6 134 22-165 130-267 (333)
179 1atg_A MODA, periplasmic molyb 90.4 1.7 5.8E-05 41.8 11.2 71 403-482 14-90 (231)
180 2pfy_A Putative exported prote 90.1 1.9 6.5E-05 44.0 11.7 57 589-657 129-185 (301)
181 3ouf_A Potassium channel prote 90.1 0.097 3.3E-06 43.3 1.5 57 530-586 31-89 (97)
182 2pfz_A Putative exported prote 89.7 2 6.9E-05 43.8 11.5 58 589-658 128-185 (301)
183 3fxq_A LYSR type regulator of 89.6 6 0.0002 40.0 15.2 85 374-482 92-176 (305)
184 1al3_A Cys regulon transcripti 89.5 15 0.00052 37.4 18.4 84 374-482 93-176 (324)
185 2q67_A Potassium channel prote 89.4 0.19 6.6E-06 43.0 2.8 54 531-584 49-104 (114)
186 2hzl_A Trap-T family sorbitol/ 88.9 1.3 4.4E-05 46.8 9.6 88 589-689 163-252 (365)
187 3uug_A Multiple sugar-binding 88.9 1.5 5.3E-05 45.2 10.2 150 4-158 59-232 (330)
188 1p7b_A Integral membrane chann 88.6 0.26 9E-06 50.8 3.7 60 527-586 92-153 (333)
189 4gx0_A TRKA domain protein; me 88.2 0.5 1.7E-05 53.4 6.2 120 531-657 51-180 (565)
190 3hs3_A Ribose operon repressor 88.0 1.8 6.1E-05 43.5 9.6 127 23-163 80-211 (277)
191 3r26_A Molybdate-binding perip 88.0 6.9 0.00024 38.1 13.6 70 404-482 22-97 (237)
192 3vou_A ION transport 2 domain 87.8 0.54 1.9E-05 42.3 4.9 52 531-582 52-105 (148)
193 1lnq_A MTHK channels, potassiu 87.7 0.34 1.1E-05 50.7 4.0 121 531-660 45-168 (336)
194 1xs5_A 29 kDa protein, membran 87.1 14 0.00047 36.1 15.0 36 407-450 21-56 (241)
195 3h5t_A Transcriptional regulat 86.9 0.98 3.4E-05 47.7 7.2 132 22-160 145-298 (366)
196 2de3_A Dibenzothiophene desulf 86.9 3.2 0.00011 43.7 11.2 119 590-718 110-299 (365)
197 1uth_A LYSR-type regulatory pr 86.9 10 0.00035 38.5 14.9 70 401-482 118-187 (315)
198 1orq_C Potassium channel; volt 86.7 0.49 1.7E-05 46.1 4.3 72 508-583 146-219 (223)
199 1xl4_A Inward rectifier potass 86.7 0.38 1.3E-05 49.0 3.5 60 526-585 77-138 (301)
200 3gzg_A Molybdate-binding perip 86.4 6 0.0002 39.1 12.2 70 404-482 38-113 (253)
201 2hqb_A Transcriptional activat 86.0 10 0.00035 38.3 14.1 139 3-153 62-204 (296)
202 1sw5_A Osmoprotection protein 85.6 7.1 0.00024 39.1 12.5 105 590-703 124-237 (275)
203 3hhf_B Transcriptional regulat 83.4 5.2 0.00018 37.5 9.9 80 374-482 7-86 (213)
204 3miz_A Putative transcriptiona 82.6 0.77 2.6E-05 46.9 3.8 134 22-163 86-230 (301)
205 2hpg_A ABC transporter, peripl 81.7 6.1 0.00021 40.8 10.2 60 589-659 148-207 (327)
206 3ox4_A Alcohol dehydrogenase 2 81.6 9.8 0.00034 40.2 12.0 90 61-150 20-111 (383)
207 3bfj_A 1,3-propanediol oxidore 81.2 7.9 0.00027 41.0 11.1 88 62-149 23-114 (387)
208 1twy_A ABC transporter, peripl 81.0 44 0.0015 32.8 17.7 71 403-482 42-113 (290)
209 3beh_A MLL3241 protein; transm 80.4 0.8 2.8E-05 48.2 3.0 75 505-583 139-215 (355)
210 2h9b_A HTH-type transcriptiona 78.4 58 0.002 32.6 19.2 70 401-482 103-172 (312)
211 2qks_A KIR3.1-prokaryotic KIR 78.3 1.3 4.5E-05 45.4 3.6 56 531-586 78-135 (321)
212 3hn0_A Nitrate transport prote 77.5 5.6 0.00019 40.1 8.2 60 601-665 96-160 (283)
213 2r9r_B Paddle chimera voltage 77.5 2.3 7.8E-05 47.0 5.5 72 508-583 356-429 (514)
214 2xwv_A Sialic acid-binding per 77.4 18 0.00061 36.9 12.1 60 589-659 133-192 (312)
215 3lkv_A Uncharacterized conserv 77.1 9.5 0.00033 38.7 9.9 128 2-139 67-203 (302)
216 3kos_A HTH-type transcriptiona 77.1 34 0.0012 31.8 13.6 104 592-703 96-203 (219)
217 2xed_A Putative maleate isomer 76.9 11 0.00038 37.6 10.0 79 60-141 134-220 (273)
218 2h98_A HTH-type transcriptiona 75.7 69 0.0024 32.1 19.6 70 401-482 103-172 (313)
219 1rrm_A Lactaldehyde reductase; 73.2 13 0.00046 39.2 10.1 101 47-150 9-111 (386)
220 3s99_A Basic membrane lipoprot 72.6 23 0.0008 36.8 11.6 139 3-154 85-230 (356)
221 2dgd_A 223AA long hypothetical 71.6 12 0.00042 35.9 8.6 79 60-141 96-183 (223)
222 4edp_A ABC transporter, substr 71.6 62 0.0021 32.9 14.9 81 630-715 216-298 (351)
223 1r9l_A Glycine betaine-binding 71.0 19 0.00065 36.6 10.3 40 404-451 24-63 (309)
224 3k6v_A Solute-binding protein 70.2 97 0.0033 32.0 15.6 70 404-482 58-133 (354)
225 3l6g_A Betaine ABC transporter 70.2 26 0.00087 34.5 10.7 43 402-453 16-58 (256)
226 3szp_A Transcriptional regulat 69.9 4.7 0.00016 40.2 5.4 80 374-482 91-170 (291)
227 1vlj_A NADH-dependent butanol 69.4 12 0.00042 39.8 8.8 88 62-149 33-123 (407)
228 4ef1_A Pheromone COB1/lipoprot 69.4 61 0.0021 31.5 12.7 37 406-450 21-57 (246)
229 3onm_A Transcriptional regulat 69.3 77 0.0026 29.9 17.7 82 373-482 26-107 (238)
230 1nh8_A ATP phosphoribosyltrans 68.5 19 0.00066 36.0 9.2 102 590-704 120-224 (304)
231 3qi7_A Putative transcriptiona 68.2 19 0.00066 37.3 9.5 151 4-157 87-252 (371)
232 2l82_A Designed protein OR32; 67.1 47 0.0016 26.8 9.3 96 50-154 5-104 (162)
233 1o2d_A Alcohol dehydrogenase, 66.5 25 0.00087 36.8 10.3 99 47-149 19-120 (371)
234 3ukm_A Potassium channel subfa 66.5 2.4 8.2E-05 42.3 2.2 64 530-593 200-272 (280)
235 2rin_A Putative glycine betain 65.5 22 0.00075 35.9 9.3 64 590-658 104-181 (298)
236 3m9w_A D-xylose-binding peripl 65.1 20 0.00069 36.2 9.2 79 73-154 3-84 (313)
237 3cij_A UPF0100 protein AF_0094 64.9 83 0.0028 31.3 13.7 70 404-482 20-95 (295)
238 3uhj_A Probable glycerol dehyd 63.1 8.3 0.00028 40.7 5.7 82 62-147 43-126 (387)
239 3tmg_A Glycine betaine, L-prol 63.1 48 0.0016 33.0 11.2 41 404-453 32-72 (280)
240 2xxp_A CPS2A; replication, pep 62.8 12 0.00041 39.5 6.9 68 588-664 25-98 (398)
241 3isp_A HTH-type transcriptiona 62.7 55 0.0019 32.5 12.0 47 432-482 127-173 (303)
242 3cfz_A UPF0100 protein MJ1186; 62.3 56 0.0019 32.5 11.8 71 403-482 19-95 (292)
243 3cfx_A UPF0100 protein MA_0280 61.2 1.2E+02 0.0042 30.0 14.2 70 404-482 20-95 (296)
244 1h3d_A ATP-phosphoribosyltrans 60.1 56 0.0019 32.7 10.8 102 590-705 115-219 (299)
245 2hxw_A Major antigenic peptide 58.5 38 0.0013 32.4 9.4 69 404-482 16-91 (237)
246 3ce9_A Glycerol dehydrogenase; 56.5 26 0.00088 36.4 8.1 110 47-167 12-123 (354)
247 3l49_A ABC sugar (ribose) tran 55.7 27 0.00091 34.7 8.0 79 73-154 6-87 (291)
248 3jy6_A Transcriptional regulat 55.7 32 0.0011 33.8 8.6 77 73-154 8-86 (276)
249 2czl_A Hypothetical protein TT 55.6 37 0.0013 33.3 9.0 59 594-660 91-150 (272)
250 3tb6_A Arabinose metabolism tr 55.3 35 0.0012 33.9 8.8 79 73-154 16-100 (298)
251 3gbv_A Putative LACI-family tr 54.5 27 0.00092 34.9 7.8 83 72-154 8-95 (304)
252 1jq5_A Glycerol dehydrogenase; 53.9 21 0.00072 37.4 7.0 108 47-165 10-119 (370)
253 1mkz_A Molybdenum cofactor bio 52.9 35 0.0012 31.1 7.5 64 73-138 11-78 (172)
254 3l6u_A ABC-type sugar transpor 52.7 31 0.0011 34.2 7.9 79 73-154 9-90 (293)
255 3lr1_A Tungstate ABC transport 52.3 10 0.00036 36.8 3.9 75 400-483 18-95 (236)
256 3h75_A Periplasmic sugar-bindi 51.8 32 0.0011 35.4 8.0 80 72-154 3-87 (350)
257 3o74_A Fructose transport syst 51.2 20 0.00067 35.2 6.0 79 73-154 3-83 (272)
258 1p99_A Hypothetical protein PG 50.5 71 0.0024 32.0 10.0 36 407-450 56-91 (295)
259 3g1w_A Sugar ABC transporter; 49.8 30 0.001 34.6 7.3 80 73-154 5-87 (305)
260 3mz1_A Putative transcriptiona 49.3 65 0.0022 31.6 9.7 80 374-482 88-167 (300)
261 3uug_A Multiple sugar-binding 49.1 38 0.0013 34.3 8.1 79 73-154 4-85 (330)
262 3dbi_A Sugar-binding transcrip 49.1 44 0.0015 34.0 8.6 89 63-154 52-144 (338)
263 3lmz_A Putative sugar isomeras 49.0 54 0.0018 31.9 8.8 94 60-154 32-127 (257)
264 3p6l_A Sugar phosphate isomera 48.6 54 0.0019 31.9 8.8 93 61-154 25-129 (262)
265 3brq_A HTH-type transcriptiona 48.5 54 0.0019 32.3 9.0 80 71-154 18-102 (296)
266 3muq_A Uncharacterized conserv 47.2 14 0.00047 35.9 3.9 75 400-483 18-95 (237)
267 8abp_A L-arabinose-binding pro 47.2 48 0.0016 33.0 8.3 78 73-154 3-83 (306)
268 2fn9_A Ribose ABC transporter, 46.9 43 0.0015 33.1 7.8 79 73-154 3-84 (290)
269 2l69_A Rossmann 2X3 fold prote 46.2 1E+02 0.0036 24.0 7.9 100 46-153 25-125 (134)
270 3fd3_A Chromosome replication 45.9 1.7E+02 0.0058 26.3 13.2 68 401-481 15-82 (208)
271 3hl0_A Maleylacetate reductase 45.2 34 0.0012 35.5 6.7 96 62-166 24-121 (353)
272 2fvy_A D-galactose-binding per 44.6 60 0.0021 32.3 8.6 79 73-154 3-85 (309)
273 3lte_A Response regulator; str 44.5 1.1E+02 0.0038 25.4 9.2 66 77-154 10-77 (132)
274 3gt7_A Sensor protein; structu 44.5 1.2E+02 0.004 26.3 9.7 65 77-153 11-77 (154)
275 4dik_A Flavoprotein; TM0755, e 44.0 1.1E+02 0.0037 32.4 10.6 104 60-168 252-364 (410)
276 3kke_A LACI family transcripti 44.0 42 0.0014 33.6 7.3 87 64-154 7-95 (303)
277 2vd3_A ATP phosphoribosyltrans 43.5 30 0.001 34.4 5.7 102 590-704 105-208 (289)
278 2klu_A T-cell surface glycopro 43.1 46 0.0016 24.4 4.9 14 749-762 13-26 (70)
279 3rot_A ABC sugar transporter, 42.9 36 0.0012 33.9 6.5 81 73-154 4-87 (297)
280 3k4h_A Putative transcriptiona 42.8 40 0.0014 33.3 6.9 79 72-154 8-93 (292)
281 2vpn_A Periplasmic substrate b 42.8 39 0.0013 34.4 6.7 90 588-689 129-218 (316)
282 3tsm_A IGPS, indole-3-glycerol 42.8 1E+02 0.0036 30.3 9.5 87 61-155 82-171 (272)
283 2iks_A DNA-binding transcripti 42.7 28 0.00097 34.6 5.7 84 67-153 15-100 (293)
284 1i4n_A Indole-3-glycerol phosp 42.4 61 0.0021 31.6 7.6 86 61-155 64-152 (251)
285 1tjy_A Sugar transport protein 42.3 37 0.0013 34.4 6.5 80 73-154 4-86 (316)
286 3huu_A Transcription regulator 41.6 30 0.001 34.7 5.7 87 64-154 14-107 (305)
287 1oj7_A Hypothetical oxidoreduc 41.5 85 0.0029 33.2 9.4 83 63-149 43-128 (408)
288 1nrz_A PTS system, sorbose-spe 41.0 59 0.002 29.3 6.7 80 60-147 15-94 (164)
289 2fep_A Catabolite control prot 41.0 58 0.002 32.2 7.7 78 73-154 17-96 (289)
290 3gl9_A Response regulator; bet 40.9 1.1E+02 0.0038 25.2 8.5 77 77-165 6-84 (122)
291 3hhg_A Transcriptional regulat 40.7 59 0.002 32.2 7.8 67 401-482 106-172 (306)
292 3ksm_A ABC-type sugar transpor 40.7 43 0.0015 32.7 6.6 80 74-154 2-85 (276)
293 3um7_A Potassium channel subfa 40.4 9.3 0.00032 38.7 1.5 53 530-582 114-168 (309)
294 3d02_A Putative LACI-type tran 39.4 60 0.0021 32.2 7.6 80 73-154 5-87 (303)
295 3h5o_A Transcriptional regulat 39.3 89 0.003 31.7 9.0 87 64-154 54-142 (339)
296 3jzd_A Iron-containing alcohol 39.0 48 0.0016 34.4 6.7 97 61-166 25-123 (358)
297 1vsq_C Mannose-specific phosph 39.0 51 0.0017 29.8 6.0 80 60-147 18-97 (165)
298 3kjx_A Transcriptional regulat 38.2 1E+02 0.0035 31.3 9.3 78 73-154 69-148 (344)
299 2nr1_A NR1 M2, M2; receptor, s 37.9 12 0.00039 22.0 0.9 18 529-546 6-23 (27)
300 2zsk_A PH1733, 226AA long hypo 37.7 87 0.003 29.8 8.0 41 61-104 104-144 (226)
301 3mwb_A Prephenate dehydratase; 37.5 78 0.0027 31.9 7.7 85 601-691 6-101 (313)
302 1jx6_A LUXP protein; protein-l 37.5 67 0.0023 32.7 7.7 82 73-154 44-129 (342)
303 4exl_A PBP 1, phosphate-bindin 37.1 67 0.0023 31.5 7.3 71 402-482 17-91 (265)
304 3up9_A Putative uncharacterize 36.9 51 0.0018 31.9 6.0 101 603-709 10-131 (245)
305 2qmw_A PDT, prephenate dehydra 36.8 82 0.0028 31.0 7.6 82 602-690 4-96 (267)
306 2ioy_A Periplasmic sugar-bindi 36.7 68 0.0023 31.5 7.4 78 74-154 3-83 (283)
307 3s99_A Basic membrane lipoprot 36.5 65 0.0022 33.3 7.3 76 72-151 26-107 (356)
308 1y5e_A Molybdenum cofactor bio 36.4 88 0.003 28.2 7.4 67 70-138 11-81 (169)
309 2gzm_A Glutamate racemase; enz 36.3 58 0.002 32.1 6.6 31 3-33 64-94 (267)
310 1ta9_A Glycerol dehydrogenase; 36.2 48 0.0016 35.6 6.4 96 62-165 81-178 (450)
311 3egc_A Putative ribose operon 35.5 38 0.0013 33.6 5.2 79 72-154 8-88 (291)
312 2pjk_A 178AA long hypothetical 35.5 87 0.003 28.6 7.2 67 70-138 13-90 (178)
313 3grc_A Sensor protein, kinase; 35.2 99 0.0034 26.1 7.4 64 77-152 10-75 (140)
314 3e61_A Putative transcriptiona 35.2 60 0.002 31.7 6.7 76 73-154 9-87 (277)
315 2l69_A Rossmann 2X3 fold prote 35.2 1.1E+02 0.0038 23.9 6.4 70 47-125 51-120 (134)
316 2dri_A D-ribose-binding protei 35.1 83 0.0028 30.6 7.7 79 73-154 2-83 (271)
317 2oho_A Glutamate racemase; iso 34.9 47 0.0016 32.9 5.7 31 3-33 73-103 (273)
318 3gv0_A Transcriptional regulat 34.4 63 0.0022 31.9 6.7 79 72-154 8-90 (288)
319 3rfq_A Pterin-4-alpha-carbinol 34.2 66 0.0022 29.7 6.1 65 72-138 30-98 (185)
320 3i42_A Response regulator rece 34.0 1.9E+02 0.0066 23.6 12.1 77 77-165 7-85 (127)
321 2is8_A Molybdopterin biosynthe 33.8 77 0.0026 28.5 6.5 63 74-138 3-71 (164)
322 2qip_A Protein of unknown func 33.6 2.5E+02 0.0086 24.9 10.0 93 61-154 36-134 (165)
323 3cg1_A UPF0100 protein PF0080; 33.4 3.5E+02 0.012 26.4 12.9 72 404-482 20-100 (296)
324 3um7_A Potassium channel subfa 33.3 24 0.00081 35.7 3.1 51 531-581 224-282 (309)
325 4a29_A Engineered retro-aldol 33.2 1.1E+02 0.0038 29.7 7.6 86 62-156 68-156 (258)
326 3eye_A PTS system N-acetylgala 33.0 51 0.0017 29.9 5.0 80 60-148 20-100 (168)
327 2dwu_A Glutamate racemase; iso 33.0 1.3E+02 0.0044 29.7 8.6 32 2-33 67-98 (276)
328 3d8u_A PURR transcriptional re 33.0 76 0.0026 30.8 7.0 78 73-154 4-83 (275)
329 2b4l_A Glycine betaine-binding 32.7 92 0.0032 30.6 7.4 59 372-453 163-221 (268)
330 3k9c_A Transcriptional regulat 32.6 90 0.0031 30.7 7.5 78 71-154 11-89 (289)
331 3lfj_A Manxb, phosphotransfera 32.5 45 0.0015 30.8 4.6 81 60-148 36-116 (187)
332 2hqb_A Transcriptional activat 32.1 67 0.0023 32.1 6.5 63 73-138 6-72 (296)
333 2pln_A HP1043, response regula 31.9 1.7E+02 0.0057 24.5 8.3 55 87-152 29-83 (137)
334 3t6k_A Response regulator rece 31.8 1.4E+02 0.0049 25.0 7.9 65 77-153 8-74 (136)
335 2qsx_A Putative transcriptiona 31.5 3E+02 0.01 25.1 13.1 80 374-482 19-98 (218)
336 3e3m_A Transcriptional regulat 31.5 1.1E+02 0.0039 31.1 8.4 88 63-154 61-150 (355)
337 2h3h_A Sugar ABC transporter, 31.3 89 0.003 31.2 7.3 79 74-154 3-83 (313)
338 2fqx_A Membrane lipoprotein TM 31.1 1.2E+02 0.0041 30.5 8.3 62 73-138 5-71 (318)
339 1ble_A Fructose permease; phos 31.1 55 0.0019 29.5 4.9 80 60-147 16-95 (163)
340 3cvg_A Putative metal binding 30.2 40 0.0014 33.7 4.4 74 401-483 33-116 (294)
341 4ecf_A ABC-type phosphate tran 30.0 1.1E+02 0.0038 29.9 7.5 72 402-483 17-92 (264)
342 3to5_A CHEY homolog; alpha(5)b 29.9 1.1E+02 0.0036 26.4 6.5 79 76-165 15-95 (134)
343 3c3k_A Alanine racemase; struc 29.4 1.3E+02 0.0043 29.5 8.0 76 73-153 9-86 (285)
344 3iwt_A 178AA long hypothetical 29.3 1.1E+02 0.0038 27.8 6.9 49 88-138 41-90 (178)
345 4euo_A ABC transporter, substr 29.3 4.2E+02 0.015 26.1 16.1 76 626-706 175-250 (320)
346 2rjo_A Twin-arginine transloca 29.2 67 0.0023 32.5 6.0 79 73-154 6-89 (332)
347 2vk2_A YTFQ, ABC transporter p 29.2 82 0.0028 31.4 6.6 79 73-154 3-84 (306)
348 2qmx_A Prephenate dehydratase; 29.2 1.5E+02 0.0051 29.4 8.1 77 602-690 7-94 (283)
349 2rgy_A Transcriptional regulat 29.1 68 0.0023 31.7 5.9 78 73-154 9-91 (290)
350 3hcw_A Maltose operon transcri 29.0 69 0.0024 31.7 5.9 78 73-154 8-92 (295)
351 2eq5_A 228AA long hypothetical 28.8 37 0.0013 32.5 3.7 69 68-141 112-186 (228)
352 2l8s_A Integrin alpha-1; trans 28.7 80 0.0027 22.3 4.2 22 752-773 21-42 (54)
353 3hs3_A Ribose operon repressor 28.7 88 0.003 30.6 6.6 68 67-137 5-75 (277)
354 2hsg_A Glucose-resistance amyl 28.5 1E+02 0.0035 31.1 7.2 78 73-154 61-140 (332)
355 2x7x_A Sensor protein; transfe 28.4 1.4E+02 0.0048 29.9 8.3 79 73-154 7-88 (325)
356 3umf_A Adenylate kinase; rossm 28.3 26 0.00088 33.5 2.3 31 4-34 30-60 (217)
357 3lua_A Response regulator rece 28.3 1.3E+02 0.0046 25.2 7.1 63 77-151 8-75 (140)
358 3bil_A Probable LACI-family tr 28.2 89 0.003 31.9 6.8 78 73-154 67-146 (348)
359 3kto_A Response regulator rece 28.1 1.8E+02 0.0062 24.2 7.9 65 77-153 10-78 (136)
360 3c3m_A Response regulator rece 28.0 2.6E+02 0.0089 23.2 9.1 77 77-165 7-85 (138)
361 3pzy_A MOG; ssgcid, seattle st 27.9 1.1E+02 0.0037 27.5 6.4 63 73-138 8-75 (164)
362 3sya_A G protein-activated inw 27.8 28 0.00095 35.7 2.6 59 529-587 89-151 (340)
363 3hv2_A Response regulator/HD d 27.7 2.1E+02 0.0073 24.4 8.5 65 77-153 18-84 (153)
364 1jye_A Lactose operon represso 27.5 1.5E+02 0.005 30.2 8.3 65 71-137 60-126 (349)
365 1jfl_A Aspartate racemase; alp 27.4 1.1E+02 0.0037 29.2 6.7 38 63-103 107-144 (228)
366 3rvy_A ION transport protein; 27.4 22 0.00075 35.6 1.7 58 529-586 178-243 (285)
367 3cnb_A DNA-binding response re 27.3 2.7E+02 0.0091 23.1 8.9 64 77-152 12-79 (143)
368 2o20_A Catabolite control prot 27.1 1.2E+02 0.0042 30.5 7.5 80 71-154 62-143 (332)
369 1ccw_A Protein (glutamate muta 26.9 3E+02 0.01 23.6 8.9 85 74-165 5-93 (137)
370 4es6_A Uroporphyrinogen-III sy 26.9 35 0.0012 33.3 3.1 85 58-151 114-206 (254)
371 3eod_A Protein HNR; response r 26.8 2.2E+02 0.0075 23.3 8.1 68 73-153 8-77 (130)
372 3qk7_A Transcriptional regulat 26.7 79 0.0027 31.3 5.9 77 73-154 7-89 (294)
373 2jfn_A Glutamate racemase; cel 26.6 1.3E+02 0.0044 29.9 7.3 31 3-33 83-113 (285)
374 2lpm_A Two-component response 26.5 53 0.0018 28.0 3.8 67 76-153 11-79 (123)
375 2knc_A Integrin alpha-IIB; tra 26.3 94 0.0032 22.0 4.2 21 752-772 24-44 (54)
376 1y80_A Predicted cobalamin bin 26.0 3.4E+02 0.011 25.2 9.9 87 73-165 89-179 (210)
377 3f6p_A Transcriptional regulat 25.9 1.9E+02 0.0066 23.4 7.4 64 77-152 6-71 (120)
378 3fni_A Putative diflavin flavo 25.8 2.2E+02 0.0077 25.1 8.1 76 73-156 5-87 (159)
379 2jfq_A Glutamate racemase; cel 25.8 1.2E+02 0.0042 30.1 7.0 31 3-33 83-113 (286)
380 2qxy_A Response regulator; reg 25.8 2.9E+02 0.0098 23.0 9.1 65 77-153 8-73 (142)
381 2rjn_A Response regulator rece 25.5 2.9E+02 0.0098 23.5 8.9 58 87-153 18-77 (154)
382 3brs_A Periplasmic binding pro 25.5 52 0.0018 32.4 4.2 80 73-153 6-90 (289)
383 3nhm_A Response regulator; pro 25.5 2.6E+02 0.009 22.9 8.4 76 77-165 8-85 (133)
384 3clk_A Transcription regulator 25.5 69 0.0024 31.6 5.1 79 73-154 9-89 (290)
385 1dbq_A Purine repressor; trans 25.4 1.5E+02 0.0053 28.8 7.8 64 73-139 8-73 (289)
386 3kn3_A Putative periplasmic pr 24.9 43 0.0015 32.5 3.2 74 400-482 18-94 (242)
387 3f6c_A Positive transcription 24.6 2.4E+02 0.0083 23.2 8.0 59 87-153 12-72 (134)
388 3miz_A Putative transcriptiona 24.6 1.9E+02 0.0066 28.4 8.4 72 65-139 6-80 (301)
389 3okf_A 3-dehydroquinate syntha 24.5 1.9E+02 0.0064 30.2 8.3 110 47-165 41-158 (390)
390 1pii_A N-(5'phosphoribosyl)ant 24.5 1.3E+02 0.0045 32.1 7.2 86 61-155 71-159 (452)
391 2g2c_A Putative molybdenum cof 24.3 78 0.0027 28.5 4.7 63 74-138 7-78 (167)
392 2yxb_A Coenzyme B12-dependent 24.2 3.7E+02 0.013 23.7 10.6 86 73-165 19-108 (161)
393 1gud_A ALBP, D-allose-binding 24.2 1.2E+02 0.0041 29.7 6.7 81 73-154 2-85 (288)
394 3bbl_A Regulatory protein of L 24.0 89 0.003 30.7 5.6 78 73-154 5-88 (287)
395 1b73_A Glutamate racemase; iso 23.8 91 0.0031 30.4 5.5 68 68-139 102-180 (254)
396 3sr0_A Adenylate kinase; phosp 23.8 37 0.0013 32.0 2.5 31 5-35 2-32 (206)
397 2qr3_A Two-component system re 23.7 2.2E+02 0.0077 23.6 7.7 58 87-153 14-78 (140)
398 1xah_A Sadhqs, 3-dehydroquinat 23.7 2E+02 0.0067 29.6 8.3 110 47-166 11-126 (354)
399 2j48_A Two-component sensor ki 23.5 2.7E+02 0.0092 21.9 8.6 58 87-153 12-71 (119)
400 3p3v_A PTS system, N-acetylgal 23.5 73 0.0025 28.7 4.2 78 60-147 19-96 (163)
401 3rf7_A Iron-containing alcohol 23.4 1.3E+02 0.0045 31.2 6.9 96 47-149 28-131 (375)
402 2vvt_A Glutamate racemase; iso 22.8 1.4E+02 0.0047 29.8 6.6 31 3-33 85-115 (290)
403 3ukm_A Potassium channel subfa 22.4 55 0.0019 32.4 3.5 52 529-580 91-144 (280)
404 1vc4_A Indole-3-glycerol phosp 22.4 2.7E+02 0.0092 27.0 8.5 87 61-155 68-156 (254)
405 1mb3_A Cell division response 21.9 3.1E+02 0.011 22.0 8.2 64 77-152 5-70 (124)
406 3rqi_A Response regulator prot 21.8 2.5E+02 0.0085 25.1 7.9 75 77-165 11-87 (184)
407 3kbq_A Protein TA0487; structu 21.7 1.6E+02 0.0055 26.7 6.2 61 74-137 5-70 (172)
408 3qja_A IGPS, indole-3-glycerol 21.7 2.3E+02 0.0078 27.9 7.8 87 61-155 75-164 (272)
409 3fxb_A Trap dicarboxylate tran 21.6 1.5E+02 0.0051 30.0 6.8 89 589-689 144-232 (326)
410 2gkg_A Response regulator homo 21.5 2.6E+02 0.009 22.4 7.5 64 77-152 9-75 (127)
411 3o1i_D Periplasmic protein TOR 21.5 78 0.0027 31.3 4.6 80 73-154 6-88 (304)
412 2k1k_A Ephrin type-A receptor 20.9 86 0.0029 20.4 2.9 9 735-743 7-15 (38)
413 2jba_A Phosphate regulon trans 20.8 2.9E+02 0.01 22.2 7.7 65 77-153 6-72 (127)
414 3guv_A Site-specific recombina 20.5 4.4E+02 0.015 23.2 10.2 23 58-81 26-48 (167)
415 3eeg_A 2-isopropylmalate synth 20.5 6.3E+02 0.021 25.4 11.1 134 2-154 15-165 (325)
416 3kht_A Response regulator; PSI 20.3 3.8E+02 0.013 22.3 11.3 72 87-165 16-89 (144)
417 1sg6_A Pentafunctional AROM po 20.2 3.7E+02 0.013 28.0 9.6 94 67-165 31-140 (393)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=2.5e-92 Score=857.92 Aligned_cols=712 Identities=23% Similarity=0.352 Sum_probs=583.0
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|+|||||.+|..+.+++++++.++||+||++ ++.. ..+||+||+.|+ |+.++++++++|||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d 129 (823)
T 3kg2_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (823)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-C
T ss_pred hcCcEEEEcCCChhHHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-e
Confidence 3589999999999999999999999999999973 3433 367899999998 889999999999999999999 8
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCC--CChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPG--ASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~--~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
++||...++.+.+++++.|+||++.+.++.+ .++.|++.++.+|+++++|+||++++.+++..++++|+++||++++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~ 209 (823)
T 3kg2_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (823)
T ss_dssp GGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTC
T ss_pred CChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCe
Confidence 8899999999999999999999999887754 23578999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCC---CCCCCccchhHHHhhHHHHHH
Q 003275 160 VWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE---NSPSGFNSYALYAYDSVWLVA 236 (834)
Q Consensus 160 vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~---~~~~~~~~~~~~~YDav~~la 236 (834)
+||.+++.....+. ....+...|++++.++.++++..++|.++|++++... .....++.+++++||||+++|
T Consensus 210 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la 284 (823)
T 3kg2_A 210 HYIIANLGFTDGDL-----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284 (823)
T ss_dssp EEEECSSBSSSSCC-----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEecccccccch-----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHH
Confidence 99999853332222 1223445668999999999999999999999887421 223346788999999999999
Q ss_pred HHHHHHHhcCCCccccCCCCCCCCCCCCccCCCc--cccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee
Q 003275 237 HALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSL--RVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG 314 (834)
Q Consensus 237 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~ 314 (834)
+|+++++.++.+..... ....|... .+|.+|.+|+++|++++|+|++|+++||++|++....|+|+|++
T Consensus 285 ~Al~~~~~~~~~~~~~~---------~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~ 355 (823)
T 3kg2_A 285 EAFRNLRKQRIEISRRG---------NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 355 (823)
T ss_dssp HHHHHHHTTTCCCCCSS---------CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEEC
T ss_pred HHHHHHHhhccccccCC---------CCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEc
Confidence 99999987655432211 11123332 46788999999999999999999999999999999999999999
Q ss_pred ccceEEEEEecCCCCcccccccccccCCCCCCCCCccceeeecCCccccCcccccCCCCCceEEEecCccccccceecc-
Q 003275 315 GTGSRRIGYWSNYSGLSVVAPEILYTKPPNSSSNRHLYSVIWPGEITATPRGWVFPNNGMPLRIAVPNRVSYNEFVAKD- 393 (834)
Q Consensus 315 ~~~~~~vG~w~~~~gl~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~pr~~~~~~~g~~lrv~~~~~~~~~p~~~~~- 393 (834)
+++++.||+|++..|+....+ + ....+|++|+|++...+ ||++..
T Consensus 356 ~~g~~~vg~w~~~~g~~~~~~-----------------------------~--~~~~~~~~l~v~~~~~~---P~~~~~~ 401 (823)
T 3kg2_A 356 TNGPRKIGYWSEVDKMVLTED-----------------------------D--TSGLEQKTVVVTTILES---PYVMMKA 401 (823)
T ss_dssp SSCEEEEEEEETTTEEEECCC-----------------------------C--CSSCCCCCEEEEECCCT---TTSEECT
T ss_pred CCCCeeEEEEcCCCCceeccC-----------------------------c--ccccCCCEEEEEEecCC---CcEEEec
Confidence 999999999999887663211 0 01345899999996554 444431
Q ss_pred -----CCCCceeeeeHHHHHHHHHhCCCCcCEEEEe---cCCC-CCCCChHHHHHHHHhCcccEEeeeeeeecCceeeEE
Q 003275 394 -----KSPPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNG-KRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVD 464 (834)
Q Consensus 394 -----~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~-~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vd 464 (834)
++++++.|||+||++++++++||+++++.++ +|.. ..|++|++++++|.+|++|++++++++|++|.+.+|
T Consensus 402 ~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~d 481 (823)
T 3kg2_A 402 NHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVID 481 (823)
T ss_dssp TGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEE
T ss_pred CccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEE
Confidence 2467899999999999999999996555554 3322 246889999999999999999999999999999999
Q ss_pred ecceeeeceEEEEEecCC-CCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCC--------------C
Q 003275 465 FTQPYMESGLVVVAPVQK-LKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPP--------------S 529 (834)
Q Consensus 465 fs~p~~~~~~~~vv~~~~-~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~--------------~ 529 (834)
||.||+.+++++++|++. ..++++.|++||++.+|++++++++++++++|+++|+.+.+|+.+. .
T Consensus 482 fs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~ 561 (823)
T 3kg2_A 482 FSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNE 561 (823)
T ss_dssp ECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHH
T ss_pred eccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCccccccccccccccccc
Confidence 999999999999999887 4578999999999999999999999999999999998655443221 2
Q ss_pred cchhhHHHHHHHHhhccCCC-cccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCC-CCeeEe
Q 003275 530 QQLVTIFWFSFSTMFFSHRE-NTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISST-EPIGVQ 607 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~-~~v~~~ 607 (834)
.++.+++|++++++++++.. .|++.++|+++++|+|++||++++|||+|+|+||++++.++|+|++||.+++ ..+++.
T Consensus 562 ~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~ 641 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTL 641 (823)
T ss_dssp HHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECB
T ss_pred ccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEE
Confidence 34779999999999988744 7999999999999999999999999999999999999999999999999865 346777
Q ss_pred eCchhhHHHHhhhcccc-c----------ceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCc
Q 003275 608 DGSFAWNYLVDELKIAE-S----------RLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQE 676 (834)
Q Consensus 608 ~~s~~~~~l~~~~~~~~-~----------~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~ 676 (834)
.++...+++.+.. ... . ....+.+.+|+++++.+. ++.+|++.+.+.++|+.++..|+++.+++.
T Consensus 642 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~ 717 (823)
T 3kg2_A 642 DSGSTKEFFRRSK-IAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGN 717 (823)
T ss_dssp SSSHHHHHHHHCC-CHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCC
T ss_pred eCCcHHHHHHhcc-chHHHHHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEcccc
Confidence 7777777775421 110 0 112346889999999731 667899999999998887756999999999
Q ss_pred ccccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcC-CCCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHH
Q 003275 677 FTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLT-YNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLA 755 (834)
Q Consensus 677 ~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~-~~~c~~~~~~~~~~~~~l~l~~~~g~f~il~~g~~la 755 (834)
+...++++++||||||++.||++|+++.|+|++++|.++|+. ...|............+|+++++.|+|+++++|+++|
T Consensus 718 ~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la 797 (823)
T 3kg2_A 718 LDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLA 797 (823)
T ss_dssp SSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996 7789876544333677999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCc
Q 003275 756 LIFFFCRVCGQFRRFGSE 773 (834)
Q Consensus 756 l~vf~~e~~~~~~~~~~~ 773 (834)
+++|++|++|+++++++.
T Consensus 798 ~~vf~~E~~~~~~~~~~~ 815 (823)
T 3kg2_A 798 MLVALIEFCYKSRAEAKR 815 (823)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcchhhhh
Confidence 999999999988776543
No 2
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-41 Score=375.77 Aligned_cols=314 Identities=18% Similarity=0.264 Sum_probs=266.9
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|+|||||.+|..+.+++++++.++||+|+++++.+.. .+|++++|+. +.+++++++++|||++|++||+|
T Consensus 67 ~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~ 139 (389)
T 4gpa_A 67 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDT 139 (389)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECS
T ss_pred hcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEec
Confidence 4689999999999999999999999999999987765533 3566666654 34689999999999999999977
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++++ ...+.+.+++.+.|+||.....++ .+..+++.+|.+++++++|+||+.++..++..++++|+++||+.++|+|
T Consensus 140 d~~~-~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~ 216 (389)
T 4gpa_A 140 DRGY-SILQAIMEKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHY 216 (389)
T ss_dssp TTCS-HHHHHHHHHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEE
T ss_pred chhh-HHHHHHHHHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEE
Confidence 7665 567888999999999999887766 4568999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcC--CCCCCCccchhHHHhhHHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYK--ENSPSGFNSYALYAYDSVWLVAHAL 239 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~~~~~~~~~YDav~~la~Al 239 (834)
+.++++...... ........|++++..+.+.++..++|.++|++.+.. ...+..++.+++++||||+++|+|+
T Consensus 217 i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al 291 (389)
T 4gpa_A 217 IIANLGFKDISL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETF 291 (389)
T ss_dssp EECSSBGGGSCC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCccccchhh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHH
Confidence 999877654433 456677889999999999999999999999987642 1234567889999999999999999
Q ss_pred HHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceE
Q 003275 240 DALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSR 319 (834)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~ 319 (834)
++++.+....... .....+.|....+|.+|..|+++|++++|+|+||+|.||++|+|.+..|+|+|+++++++
T Consensus 292 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~ 364 (389)
T 4gpa_A 292 RSLRRQKIDISRR-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPR 364 (389)
T ss_dssp HHHHHTTCCCCCT-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEE
T ss_pred HHHHhhccccccc-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEE
Confidence 9998875543211 123345677788999999999999999999999999999999999899999999999999
Q ss_pred EEEEecCCCCcccccccc
Q 003275 320 RIGYWSNYSGLSVVAPEI 337 (834)
Q Consensus 320 ~vG~w~~~~gl~~~~~~~ 337 (834)
+||+|++.+||++..+++
T Consensus 365 ~VG~W~~~~gl~~~~~~t 382 (389)
T 4gpa_A 365 KVGYWNDMDKLVLIQDRT 382 (389)
T ss_dssp EEEEEETTTEEEECCC--
T ss_pred EEEEEECCCCeEECCCCc
Confidence 999999999999877653
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=3.5e-41 Score=370.69 Aligned_cols=309 Identities=16% Similarity=0.273 Sum_probs=259.2
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|+|||||.+|..+.+++++++.++||+|++++ |.++ ..+|.||+.|+ |+.++++++++|||++|++|| |
T Consensus 67 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d 138 (389)
T 3o21_A 67 SRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-D 138 (389)
T ss_dssp TTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-C
T ss_pred hcCcEEEEeCCChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-c
Confidence 45899999999999999999999999999998754 4443 34566777776 899999999999999999999 8
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||...++.|.+++++.|+||++.+.++.. +..|++.+|.+|+++++|+||++++...+..++++|+++||+.++|+|
T Consensus 139 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~ 217 (389)
T 3o21_A 139 TERGFSVLQAIMEAAVQNNWQVTARSVGNIK-DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHY 217 (389)
T ss_dssp STTCSHHHHHHHHHHHHTTCEEEEEECTTCC-CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEE
T ss_pred CcHHHHHHHHHHHHhhcCCCeEEEEEecCCC-CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEE
Confidence 8999999999999999999999998877642 346899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCC---CCCCCccchhHHHhhHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE---NSPSGFNSYALYAYDSVWLVAHA 238 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~---~~~~~~~~~~~~~YDav~~la~A 238 (834)
|.++.+....+. ........|++++..+.++++..++|+++|++++... .+...++.+++++||||+++|+|
T Consensus 218 i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 292 (389)
T 3o21_A 218 MLANLGFTDILL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEA 292 (389)
T ss_dssp EECCTTGGGCCC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEccCCcccccH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHH
Confidence 998754333332 2344566789999999999999999999999887421 11124578899999999999999
Q ss_pred HHHHHhcCCCccccCCCCCCCCCCCCccC--CCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeecc
Q 003275 239 LDALLNEGGKFTFSNDPKLHDTNGSMLNL--SSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGT 316 (834)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~ 316 (834)
++++..++..+.+.. ....| ....+|.+|.+|+++|++++|+|++|++.||++|++....|+|+|+.++
T Consensus 293 l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~ 363 (389)
T 3o21_A 293 FRYLRRQRVDVSRRG---------SAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVS 363 (389)
T ss_dssp HHHHHHTTCCCC--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETT
T ss_pred HHHHHhhCcccccCC---------CCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCC
Confidence 999987544332111 11123 3446788999999999999999999999999999998899999999999
Q ss_pred ceEEEEEecCCCCcccc
Q 003275 317 GSRRIGYWSNYSGLSVV 333 (834)
Q Consensus 317 ~~~~vG~w~~~~gl~~~ 333 (834)
++++||+|++.+||++.
T Consensus 364 g~~~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 364 GSRKAGYWNEYERFVPF 380 (389)
T ss_dssp EEEEEEEEETTTEEECC
T ss_pred CceeeeEEcCCCCcccc
Confidence 99999999999998743
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.8e-41 Score=371.76 Aligned_cols=309 Identities=20% Similarity=0.326 Sum_probs=243.1
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|+|||||.+|..+.+++++++.++||+|+++++ . ....+|+||+.|+ |+.++++++++|||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d 129 (376)
T 3hsy_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (376)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hcCcEEEECCCchhHHHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-e
Confidence 358999999999999999999999999999998763 2 2356899999886 899999999999999999999 8
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCC--CChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPG--ASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~--~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
++||....+.|.+++++.|+||+....++.. .++.|++.+|.+|+++++|+|+++++..++..++++|+++||+.++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~ 209 (376)
T 3hsy_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (376)
T ss_dssp STTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGC
T ss_pred CchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCc
Confidence 9999999999999999999999988776543 23579999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCC---CCCCCccchhHHHhhHHHHHH
Q 003275 160 VWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE---NSPSGFNSYALYAYDSVWLVA 236 (834)
Q Consensus 160 vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~---~~~~~~~~~~~~~YDav~~la 236 (834)
+||.+++.....+. ........+++++..+.|++|..++|.++|++++... .+...++.+++++||||+++|
T Consensus 210 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la 284 (376)
T 3hsy_A 210 HYIIANLGFTDGDL-----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284 (376)
T ss_dssp EEEECSSBTTSTTG-----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccccch-----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHH
Confidence 99999753222111 1111223348888888889999999999999887421 112257889999999999999
Q ss_pred HHHHHHHhcCCCccccCCCCCCCCCCCCccC--CCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee
Q 003275 237 HALDALLNEGGKFTFSNDPKLHDTNGSMLNL--SSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG 314 (834)
Q Consensus 237 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~ 314 (834)
+|++++..++..+... +....| ....+|.+|.+|+++|++++|+|++|+|+||++|++....|+|+++.
T Consensus 285 ~Ai~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~ 355 (376)
T 3hsy_A 285 EAFRNLRKQRIEISRR---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 355 (376)
T ss_dssp HHHHHHHHTTCCCSCC---------CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEE
T ss_pred HHHHHHHhcCCccccC---------CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEec
Confidence 9999998764433211 111233 45567889999999999999999999999999999999999999999
Q ss_pred ccceEEEEEecCCCCccc
Q 003275 315 GTGSRRIGYWSNYSGLSV 332 (834)
Q Consensus 315 ~~~~~~vG~w~~~~gl~~ 332 (834)
++++++||+|++.+||+.
T Consensus 356 ~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 356 TNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp TTEEEEEEEEETTTEEEE
T ss_pred CCCceEEEEEcCCCCcee
Confidence 999999999999998874
No 5
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.6e-40 Score=362.67 Aligned_cols=312 Identities=17% Similarity=0.261 Sum_probs=260.7
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|+|||||.+|..+.+++++++.++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |
T Consensus 65 ~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d 136 (384)
T 3saj_A 65 SKGVYAIFGFYERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-D 136 (384)
T ss_dssp HTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hcCeEEEECCCCHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-e
Confidence 3589999999999999999999999999999984 45553 45678888877 899999999999999999999 7
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||....+.|.+++++.|+||+..+.++ .+..+++.+|.+|+++++|+|+++++..++..++++|+++||+.++|+|
T Consensus 137 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~ 214 (384)
T 3saj_A 137 ADRGLSVLQRVLDTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHY 214 (384)
T ss_dssp STTCSHHHHHHHHHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred CchhHHHHHHHHHHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEE
Confidence 79999999999999999999999888654 3568899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCC---CCCCCccchhHHHhhHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE---NSPSGFNSYALYAYDSVWLVAHA 238 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~---~~~~~~~~~~~~~YDav~~la~A 238 (834)
|.++......+. ....+...|++++.++.++++..++|.++|++++... .....++.+++++||||+++|+|
T Consensus 215 i~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~A 289 (384)
T 3saj_A 215 ILANLGFMDIDL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEA 289 (384)
T ss_dssp EESSSCGGGSCH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCcccccH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHH
Confidence 999753322211 2334556679999999999999999999999887421 12224578899999999999999
Q ss_pred HHHHHhcCCCccccCCCCCCCCCCCCccCCCc--cccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeecc
Q 003275 239 LDALLNEGGKFTFSNDPKLHDTNGSMLNLSSL--RVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGT 316 (834)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~ 316 (834)
+++++.+++++.++ +....|... .+|.+|.+|+++|++++|+|++|+++||++|++.+..|+|++++++
T Consensus 290 l~~~~~~~~~~~~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~ 360 (384)
T 3saj_A 290 FQSLRRQRIDISRR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHD 360 (384)
T ss_dssp HHHHHHTTCCCCCC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETT
T ss_pred HHHHHhhccceecC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccC
Confidence 99998765443211 112233332 5678999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCcccccccc
Q 003275 317 GSRRIGYWSNYSGLSVVAPEI 337 (834)
Q Consensus 317 ~~~~vG~w~~~~gl~~~~~~~ 337 (834)
++++||+|++..||++.+++.
T Consensus 361 g~~~VG~W~~~~gl~~~~~~~ 381 (384)
T 3saj_A 361 GIRKIGYWNEDDKFVPAALEV 381 (384)
T ss_dssp EEEEEEEEETTTEEEECCC--
T ss_pred CcceeEEEcCCCCccccCccc
Confidence 999999999999988766543
No 6
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.2e-39 Score=364.93 Aligned_cols=325 Identities=18% Similarity=0.310 Sum_probs=269.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|.|||||.+|..+.+++++++.++||+|+++++++.+++ ..|||+||+.|++..|+.+++++++++||++|++||+|
T Consensus 84 ~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~ 163 (433)
T 4f11_A 84 PNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD 163 (433)
T ss_dssp CCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 48999999999999999999999999999999999999998 57999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||....+.|.+++++.|+||+..+.++ .|+..++.+|+++++|+|+++++..++..++++|+++||+.++|+|
T Consensus 164 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~ 238 (433)
T 4f11_A 164 VQRFSEVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQW 238 (433)
T ss_dssp SHHHHHHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEE
T ss_pred chhhHHHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEE
Confidence 99999999999999999999999988887 2668899999999999999999999999999999999999888999
Q ss_pred EEeCCCcccCCC--------CCCCChhhHhhcccceEEEecCCCC--------hhHHHHHHHHHhh-hcCCCCCCCccch
Q 003275 162 IATDWLPSVLDS--------TEPVDIDTMNLLQGVVALRHHTPDT--------DLKKNFISRWKNL-KYKENSPSGFNSY 224 (834)
Q Consensus 162 i~~~~~~~~~~~--------~~~~~~~~~~~~~Gv~~~~~~~~~~--------~~~~~F~~~~~~~-~~~~~~~~~~~~~ 224 (834)
|.+++....+.. .........++++|++++.++.+.. +..++|.++|+++ + +..++.+
T Consensus 239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~-----~~~~~~~ 313 (433)
T 4f11_A 239 IIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS-----GVGPSKF 313 (433)
T ss_dssp EEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT-----TSCCCTT
T ss_pred EEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC-----CCCcccc
Confidence 999985443321 1112345568899999999876532 3478999999987 4 4567889
Q ss_pred hHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCC
Q 003275 225 ALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLV 304 (834)
Q Consensus 225 ~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~ 304 (834)
++++||||+++|+|+++++.+..... . +. .+..-....|.++.+|+++|++++|+|++|+++| ++|++.
T Consensus 314 a~~~YDAv~~la~Al~~a~~~~~~~~-----~----~~-~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~ 382 (433)
T 4f11_A 314 HGYAYDGIWVIAKTLQRAMETLHASS-----R----HQ-RIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM 382 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS-----S----CC-CGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccC-----C----CC-cccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee
Confidence 99999999999999999875311100 0 00 0111112235569999999999999999999999 899976
Q ss_pred CCcEEEEEeeccceEEEEEecCCCC-cccccccccccCCCCCCCCCccceeeecCCccccCcc
Q 003275 305 NPAYDVLNIGGTGSRRIGYWSNYSG-LSVVAPEILYTKPPNSSSNRHLYSVIWPGEITATPRG 366 (834)
Q Consensus 305 ~~~~~I~~~~~~~~~~vG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~pr~ 366 (834)
..|+|+++++++++.||+|++... |.+ .-+.|.|||+..+..++
T Consensus 383 -~~~~I~~~~~g~~~~VG~~~~~~~~l~~-----------------~~~~i~W~~~~~P~D~~ 427 (433)
T 4f11_A 383 -GTIKFTQFQDSREVKVGEYNAVADTLEI-----------------INDTIRFQGSEPPKDDY 427 (433)
T ss_dssp -CEEEEEEEETTEEEEEEEEETTTTEEEE-----------------CTTTCCCSSSSCCCSSG
T ss_pred -eeEEEEEEECCceEEEEEEECCCCeEEE-----------------eCCceECCCCCCCCCcc
Confidence 899999999999999999986531 111 11368999988654443
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=1e-39 Score=360.46 Aligned_cols=309 Identities=19% Similarity=0.284 Sum_probs=250.6
Q ss_pred CCCcEEEECCCChh-hHHHHHHhhccCCccEEecccCCCCCCCCCCCce--EEccCChHHHHHHHHHHHHHcCCeEEEEE
Q 003275 2 ENEVVAAIGPQSSG-IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYF--LRTTQSDYYQMHAVADLVEYYGWREVIAI 78 (834)
Q Consensus 2 ~~~V~aiiGp~~S~-~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~--~r~~ps~~~q~~aia~ll~~~~W~~v~iI 78 (834)
+++|+|||||.+|. ++.+++++++.++||+|++++++. ...++|+| ||+.|++..|+.+++++++++||++|++|
T Consensus 68 ~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii 145 (393)
T 3om0_A 68 PKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLI 145 (393)
T ss_dssp GGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred hcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46899999999995 457999999999999999987751 12578998 99999999999999999999999999999
Q ss_pred EEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 79 FVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 79 ~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
|+|++||....+.+ +++.+.|++|.... ++ +..|++.++.+|+++++|+|+++++..++..++++|+++||+.++
T Consensus 146 ~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~ 220 (393)
T 3om0_A 146 CAKAECLLRLEELV-RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAF 220 (393)
T ss_dssp ESSTTHHHHTHHHH-HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTT
T ss_pred EeCchHHHHHHHHH-HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCC
Confidence 99999998765555 56777899998765 33 336889999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCCC---CCCCccchhHHHhhHHHHH
Q 003275 159 YVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKEN---SPSGFNSYALYAYDSVWLV 235 (834)
Q Consensus 159 ~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~---~~~~~~~~~~~~YDav~~l 235 (834)
|+||.+++.....+.. .......|++++..+.++.+..++|.++|++++.... ....++.+++++||||+++
T Consensus 221 ~~~i~~~~~~~~~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~l 295 (393)
T 3om0_A 221 YKYILTTMDFPILHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVV 295 (393)
T ss_dssp CEEEECCTTGGGCCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHH
T ss_pred eEEEEecccccccchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHH
Confidence 9999998765443321 1224567899999988899999999999988874110 0134678999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeec
Q 003275 236 AHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGG 315 (834)
Q Consensus 236 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~ 315 (834)
|+|++++.+.. .. ......|....+|.+|.+|+++|++++|+|++|+++||++|++.+..|+|+++++
T Consensus 296 a~Al~~~~~~~-~~-----------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~ 363 (393)
T 3om0_A 296 VSAVRELNRSQ-EI-----------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSR 363 (393)
T ss_dssp HHHHHHHTTTS-CC-----------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEET
T ss_pred HHHHHHHhhcc-cC-----------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEecc
Confidence 99999985431 11 1223456677789899999999999999999999999999999899999999999
Q ss_pred cceEEEEEecCCCCccccc
Q 003275 316 TGSRRIGYWSNYSGLSVVA 334 (834)
Q Consensus 316 ~~~~~vG~w~~~~gl~~~~ 334 (834)
++++.||+|++..||++..
T Consensus 364 ~g~~~VG~w~~~~gl~~~~ 382 (393)
T 3om0_A 364 QGHREIGVWYSNRTLAMNA 382 (393)
T ss_dssp TEEEEEEEEECC-------
T ss_pred CCceEeeeEcCCCCccccc
Confidence 9999999999999988653
No 8
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.5e-39 Score=357.76 Aligned_cols=307 Identities=20% Similarity=0.319 Sum_probs=261.1
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|.|||||.+|..+.+++++++.++||+|+++++++.+++ +.+|+||+.|++..|+.+++++++++||++|++|| |
T Consensus 69 ~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d 146 (395)
T 3h6g_A 69 SLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-D 146 (395)
T ss_dssp HHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-S
T ss_pred hcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-E
Confidence 358999999999999999999999999999999999999986 46889999999999999999999999999999998 7
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||....+.+.+++++.|+||+... ++.+ ..|++.++.+|+++++|+|+++++..++..++++|+++||+.+.|+|
T Consensus 147 ~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~ 223 (395)
T 3h6g_A 147 DSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHY 223 (395)
T ss_dssp STHHHHHTHHHHTGGGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEE
T ss_pred ChhHHHHHHHHHHhhhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEE
Confidence 78999999999999999999999876 7643 57999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccCCCCCCCChhhHhhccc--ceEEEecCCCChhHHHHHHHHHhhhcCCC-------CCCCccchhHHHhhHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQG--VVALRHHTPDTDLKKNFISRWKNLKYKEN-------SPSGFNSYALYAYDSV 232 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~G--v~~~~~~~~~~~~~~~F~~~~~~~~~~~~-------~~~~~~~~~~~~YDav 232 (834)
+.++......+... ....| +.++..+.++++..++|.++|++++.... ....++.+++++|||+
T Consensus 224 i~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav 296 (395)
T 3h6g_A 224 IFTTLDLFALDVEP-------YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAV 296 (395)
T ss_dssp EECCTTGGGBCCTT-------TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHH
T ss_pred EEecCceeEechHH-------hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHH
Confidence 99864332222211 11334 57788888889999999999997652100 0112567999999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEcc-CCCCCCCcEEEE
Q 003275 233 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDA-DKNLVNPAYDVL 311 (834)
Q Consensus 233 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~-~g~~~~~~~~I~ 311 (834)
+++++|++++... ....++|....+|.++.+|+++|++++|+|++|+++||+ +|++....|+|+
T Consensus 297 ~~~a~Al~~a~~~---------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~ 361 (395)
T 3h6g_A 297 HVVSVAVQQFPQM---------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVI 361 (395)
T ss_dssp HHHHHHHHTCTTC---------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEE
T ss_pred HHHHHHHHhhhcC---------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEE
Confidence 9999999986432 112345677778999999999999999999999999998 999998899999
Q ss_pred EeeccceEEEEEecCCCCcccccc
Q 003275 312 NIGGTGSRRIGYWSNYSGLSVVAP 335 (834)
Q Consensus 312 ~~~~~~~~~vG~w~~~~gl~~~~~ 335 (834)
++++++++.||+|++..|+++..+
T Consensus 362 ~~~~~~~~~vG~w~~~~g~~~~~~ 385 (395)
T 3h6g_A 362 SLKEEGLEKIGTWDPASGLNMTES 385 (395)
T ss_dssp EEETTEEEEEEEEETTTEECCCC-
T ss_pred EeccCCceEEEEEcCCCCccccCC
Confidence 999999999999999999886543
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.3e-38 Score=357.44 Aligned_cols=299 Identities=18% Similarity=0.249 Sum_probs=250.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-C-CCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-L-QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~-~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
++|+|||||.+|..+.+++++++.+++|+||+++++|.+++ . +||||||+.|++..|+.++++++++|||++|++|++
T Consensus 83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 38999999999999999999999999999999999999998 4 799999999999999999999999999999999999
Q ss_pred cCCcccc---hHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 81 DDDYGRN---GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 81 d~~~g~~---~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
|++||+. ..+.|.+++++.|+||++...++.+ ..++...+.+|+ +++|||+++++..++..++++|++.||..+
T Consensus 163 d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 163 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK--DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS--CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred cCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCc--ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 9999999 9999999999999999988777643 357899999999 899999999999999999999999999888
Q ss_pred CeEEEEeCCCcc------cCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCC--CCCCCccchhHHHh
Q 003275 158 SYVWIATDWLPS------VLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE--NSPSGFNSYALYAY 229 (834)
Q Consensus 158 ~~vwi~~~~~~~------~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~--~~~~~~~~~~~~~Y 229 (834)
.|+||.+++... .++.............+++.++..+.++.|.+++|.++|++++... .....++.+++++|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999884322 1111110111112345677777777888999999999998763110 11113567889999
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEE
Q 003275 230 DSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYD 309 (834)
Q Consensus 230 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~ 309 (834)
|||+++|+|+++++.++.. +.++.+|+++|++++|.|++|++.||++|++. ..|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEE
Confidence 9999999999998753210 23689999999999999999999999999975 8999
Q ss_pred EEEee---ccceEEEEEecCCCC
Q 003275 310 VLNIG---GTGSRRIGYWSNYSG 329 (834)
Q Consensus 310 I~~~~---~~~~~~vG~w~~~~g 329 (834)
|++++ ++.++.||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 99996 346899999998764
No 10
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=1.8e-39 Score=352.31 Aligned_cols=282 Identities=14% Similarity=0.251 Sum_probs=226.0
Q ss_pred CCcEEEEC-CCChhhHHH--HHHhhccCCccEEecccCCC-CCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEE
Q 003275 3 NEVVAAIG-PQSSGIAHV--ISHVVNELNVPLLSFGATDP-TLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIA 77 (834)
Q Consensus 3 ~~V~aiiG-p~~S~~~~~--~~~~~~~~~vP~Is~~at~~-~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~i 77 (834)
++|.|||| |.++..+.+ ++.+++.++||+|||++++| .|++ .+||||||+.|+|..|+.++++++++|||++|++
T Consensus 62 ~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~i 141 (364)
T 3qel_B 62 RKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSI 141 (364)
T ss_dssp SCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 47988875 454444544 99999999999999999999 8998 6799999999999999999999999999999999
Q ss_pred EEEcCCcccchHHHHHHHHhcC--C--cEEEeeecCCCCCChHHHHHHH-HHhhcCCceEEEEEeChhhHHHHHHHHHhC
Q 003275 78 IFVDDDYGRNGISVLGDALSKK--R--AKISYKAPFSPGASRSAINSLL-VGANLMESRVFVVHVNPDTGLTIFSVAKSL 152 (834)
Q Consensus 78 I~~d~~~g~~~~~~l~~~l~~~--g--~~I~~~~~~~~~~~~~~~~~~l-~~l~~~~~~vivl~~~~~~~~~i~~~a~~~ 152 (834)
||+|+ .+.+.|.+++++. | +||.+...++...+..+++..+ ++|++++++|||++|+.+.+..++++|.++
T Consensus 142 I~~d~----~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~ 217 (364)
T 3qel_B 142 VTTYF----PGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSV 217 (364)
T ss_dssp EEESC----TTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTT
T ss_pred EEeCC----ccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHc
Confidence 99884 3455666666655 4 4887776665544446777888 799999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHH
Q 003275 153 GMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSV 232 (834)
Q Consensus 153 g~~~~~~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav 232 (834)
||++++|+||.++.+....+... .+..+|+++++++. |++ .+.+++||||
T Consensus 218 g~~~~~y~wI~t~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~~------------~~~~~~yDaV 267 (364)
T 3qel_B 218 GLTGYGYTWIVPSLVAGDTDTVP------SEFPTGLISVSYDE------------WDY------------GLPARVRDGI 267 (364)
T ss_dssp TCSSTTCEEEECHHHHCSTTCCC------TTSCTTCEECCBCT------------TTS------------CHHHHHHHHH
T ss_pred CCCCCCeEEEEecccccCccccc------ccCCCceEEEeecc------------chh------------hHHHHHHHHH
Confidence 99999999999987543333211 14568999887653 322 2467899999
Q ss_pred HHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCc--cccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEE
Q 003275 233 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSL--RVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDV 310 (834)
Q Consensus 233 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I 310 (834)
+++|+|++++..+.+.++ ....+|... .+|.+|..|+++|++++|+|+ +++||++|++.++.|+|
T Consensus 268 ~~~A~A~~~~~~~~~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~I 334 (364)
T 3qel_B 268 AIITTAASDMLSEHSFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVI 334 (364)
T ss_dssp HHHHHHHHHHHTTTSCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEE
T ss_pred HHHHHHHHHHHhccCCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEE
Confidence 999999999876543321 112234444 368899999999999999998 89999999999999999
Q ss_pred EEee-ccceEEEEEecCCCCccc
Q 003275 311 LNIG-GTGSRRIGYWSNYSGLSV 332 (834)
Q Consensus 311 ~~~~-~~~~~~vG~w~~~~gl~~ 332 (834)
+|++ +.++++||+|++ .||++
T Consensus 335 inl~~~~~~~~VG~W~~-~~L~~ 356 (364)
T 3qel_B 335 ILLNKERKWERVGKWKD-KSLQM 356 (364)
T ss_dssp EEECTTSCEEEEEEECS-SCEEE
T ss_pred EEEcCCCCcEEEEEECC-CeEEe
Confidence 9998 678999999984 35553
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=2.6e-38 Score=348.15 Aligned_cols=281 Identities=21% Similarity=0.327 Sum_probs=229.9
Q ss_pred CCCcEEEEC-----CCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEE
Q 003275 2 ENEVVAAIG-----PQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREV 75 (834)
Q Consensus 2 ~~~V~aiiG-----p~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v 75 (834)
+++|+|||| |.+|..+.+++++++.+++|+|+++++++.+++ .+||||||+.|++..|+.++++++++|||++|
T Consensus 63 ~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v 142 (384)
T 3qek_A 63 SSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHV 142 (384)
T ss_dssp GGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEE
T ss_pred HcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEE
Confidence 458999999 678889999999999999999999999999998 67899999999999999999999999999999
Q ss_pred EEEEEcCCcccchHHHHHHHHhcCCcEE-----------Eee-------ecCCC-CCChHHHHHHHHHhhcCCceEEEEE
Q 003275 76 IAIFVDDDYGRNGISVLGDALSKKRAKI-----------SYK-------APFSP-GASRSAINSLLVGANLMESRVFVVH 136 (834)
Q Consensus 76 ~iI~~d~~~g~~~~~~l~~~l~~~g~~I-----------~~~-------~~~~~-~~~~~~~~~~l~~l~~~~~~vivl~ 136 (834)
++||+|++||++..+.|++++++.|+++ .+. +.++. ..+..+++.++.+|+++++|+||++
T Consensus 143 ~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~ 222 (384)
T 3qek_A 143 ILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILS 222 (384)
T ss_dssp EEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEE
T ss_pred EEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999999999999999753 222 11110 1234789999999999999999999
Q ss_pred eChhhHHHHHHHHHhCCCCCCCeEEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcCCC
Q 003275 137 VNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKEN 216 (834)
Q Consensus 137 ~~~~~~~~i~~~a~~~g~~~~~~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~ 216 (834)
+++.++..++++|+++||++++|+||.++++... ....+.++|+++++.+.++.
T Consensus 223 ~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~------------------ 276 (384)
T 3qek_A 223 ASEDDATAVYKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN------------------ 276 (384)
T ss_dssp CCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC------------------
T ss_pred CCHHHHHHHHHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc------------------
Confidence 9999999999999999999889999999876432 12336689999999876532
Q ss_pred CCCCccchhHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhccc-ccceeeE
Q 003275 217 SPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNF-TGLSGEI 295 (834)
Q Consensus 217 ~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f-~g~tG~i 295 (834)
.++++||||+++|+|+++++.+.... .....|.....+|..+..|.+.+++++| +|++|++
T Consensus 277 -------~~~~~YdAV~~~a~Al~~~~~~~~~~-----------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v 338 (384)
T 3qek_A 277 -------ESAHISDAVAVVAQAIHELFEMENIT-----------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRI 338 (384)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTSSSCC-----------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEE
T ss_pred -------hhHHHHHHHHHHHHHHHHHHhccCCC-----------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcce
Confidence 26789999999999999998653210 0011122345689899999999999998 9999999
Q ss_pred EEccCCCCCCCcEEEEEeeccceEEEEEecC
Q 003275 296 RFDADKNLVNPAYDVLNIGGTGSRRIGYWSN 326 (834)
Q Consensus 296 ~Fd~~g~~~~~~~~I~~~~~~~~~~vG~w~~ 326 (834)
.||++|++.+..|+|+|++++++++||+|++
T Consensus 339 ~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 339 EFNEDGDRKFAQYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp CBCTTSCBCSCCEEEEEEETTEEEEEEEECS
T ss_pred EECCCCCCCcccEEEEEEcCCceEEEEEEeC
Confidence 9999999878999999999999999999984
No 12
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=4e-38 Score=353.00 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=264.5
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEE---
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAI--- 78 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI--- 78 (834)
++|+|||||.+|..+.+++++++.+++|+||++++++.+++ .+||||||+.|++..|+.++++++++|||++|++|
T Consensus 76 ~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~ 155 (435)
T 1dp4_A 76 HSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYA 155 (435)
T ss_dssp HCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred cCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 57999999999999999999999999999999999999998 46999999999999999999999999999999999
Q ss_pred ---EEcCCcccchHHHHHHHHhc-CCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 79 ---FVDDDYGRNGISVLGDALSK-KRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 79 ---~~d~~~g~~~~~~l~~~l~~-~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
++|++|| ..++.+.+++++ .|+||+....++ .+..++..++++|++ ++||||+++...++..++++|+++||
T Consensus 156 d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~ 231 (435)
T 1dp4_A 156 DRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGL 231 (435)
T ss_dssp CCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCC
Confidence 7778888 667888889988 999999887764 345789999999998 99999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcccCC---------CC---CCCChhhHhhcccceEEEecCCCChhHHHHHHHHHhhhcC----CCCC
Q 003275 155 TAGSYVWIATDWLPSVLD---------ST---EPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYK----ENSP 218 (834)
Q Consensus 155 ~~~~~vwi~~~~~~~~~~---------~~---~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~~~~~~~~----~~~~ 218 (834)
..++|+||.++++..... .. ....+...++++|++++.++.|+++..++|.++|++.+.. ....
T Consensus 232 ~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 311 (435)
T 1dp4_A 232 TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVED 311 (435)
T ss_dssp CTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCccccc
Confidence 887899999987654321 00 0011344567899999988888889999999999876531 1111
Q ss_pred CCccchhHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEc
Q 003275 219 SGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFD 298 (834)
Q Consensus 219 ~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd 298 (834)
..++.+++++||||+++|+|+++++.+++. +.++++|+++|++++|.|++|++.||
T Consensus 312 ~~~~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd 367 (435)
T 1dp4_A 312 GLKNIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKID 367 (435)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEEC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEEC
Confidence 236778999999999999999998754221 12589999999999999999999999
Q ss_pred cCCCCCCCcEEEEEe--eccceEEEEEecCCCC-cccccccccccCCCCCCCCCccceeeecCCccccCcccc
Q 003275 299 ADKNLVNPAYDVLNI--GGTGSRRIGYWSNYSG-LSVVAPEILYTKPPNSSSNRHLYSVIWPGEITATPRGWV 368 (834)
Q Consensus 299 ~~g~~~~~~~~I~~~--~~~~~~~vG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~pr~~~ 368 (834)
++|++. ..|+|+++ .++.++.||.|++..+ |.+ .+...|+||++..+..++-|
T Consensus 368 ~~g~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 368 RNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp TTSBBC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE----------------STTCCCCCTTSSCCCSSCTT
T ss_pred CCCCcc-ceeEEEEecCCCCcEEEEEEecCCCceEEE----------------cCCceeeCCCCCCCCCCCCC
Confidence 999976 79999999 4567999999988763 111 01257999988555555555
No 13
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.4e-37 Score=356.11 Aligned_cols=324 Identities=20% Similarity=0.377 Sum_probs=260.9
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
+++|+|||||.+|..+.+++++++.+++|+|||++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 468999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
|++||+...+.|++++++.|+||++.+.++...+..++..++.+|++ +++||||+++...++..+++++.++|+ ++
T Consensus 195 d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~ 271 (555)
T 2e4u_A 195 EGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SF 271 (555)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CC
T ss_pred eChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---Ce
Confidence 99999999999999999999999999988864456889999999964 799999999999999999999999987 68
Q ss_pred EEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHH---------------HHHHHHhhhcCCC--------
Q 003275 160 VWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKN---------------FISRWKNLKYKEN-------- 216 (834)
Q Consensus 160 vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~---------------F~~~~~~~~~~~~-------- 216 (834)
+||.+++|....... ....+.++|++++.++..+.+++++ |.+.|+..|....
T Consensus 272 ~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~ 347 (555)
T 2e4u_A 272 TWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQ 347 (555)
T ss_dssp EEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------C
T ss_pred EEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCC
Confidence 999998775432211 1123568999999987655555444 4455777664210
Q ss_pred -----CC-----CCccchhHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHH-HHHh
Q 003275 217 -----SP-----SGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQ-TLLR 285 (834)
Q Consensus 217 -----~~-----~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~l~~ 285 (834)
+. ..+..+++.+||||+++|+|||+++.+.... . ...|..... .++++|++ +|++
T Consensus 348 ~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~------------~-~~~~~~~~~-~~~~~l~~~~L~~ 413 (555)
T 2e4u_A 348 VCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ------------T-TKLCDAMKI-LDGKKLYKEYLLK 413 (555)
T ss_dssp CCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT------------C-SSCCGGGTS-CCHHHHHHHHTTC
T ss_pred CCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC------------C-CccccccCC-CCcccccHHhHhc
Confidence 00 0144678899999999999999987521100 0 001222222 35889999 9999
Q ss_pred cccc------cceee-EEEccCCCCCCCcEEEEEee--cc--ceEEEEEecCCCCcccccccccccCCCCCCCCCcccee
Q 003275 286 MNFT------GLSGE-IRFDADKNLVNPAYDVLNIG--GT--GSRRIGYWSNYSGLSVVAPEILYTKPPNSSSNRHLYSV 354 (834)
Q Consensus 286 ~~f~------g~tG~-i~Fd~~g~~~~~~~~I~~~~--~~--~~~~vG~w~~~~gl~~~~~~~~~~~~~~~~~~~~l~~i 354 (834)
++|. |++|+ +.||++|++. ..|+|+|++ ++ .+++||.|++ .|.+ +...|
T Consensus 414 v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i-----------------~~~~I 473 (555)
T 2e4u_A 414 IQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSL-----------------DVDSI 473 (555)
T ss_dssp EEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEEC-----------------CGGGC
T ss_pred eeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEE-----------------ecccc
Confidence 9999 99998 9999999975 889999995 23 4789999984 3332 12468
Q ss_pred eecCCccccCcccc
Q 003275 355 IWPGEITATPRGWV 368 (834)
Q Consensus 355 ~Wpg~~~~~pr~~~ 368 (834)
.|++ .++|++.|
T Consensus 474 ~W~~--~~~P~S~C 485 (555)
T 2e4u_A 474 HWSR--NSVPTSQC 485 (555)
T ss_dssp CCTT--SSCCCCCS
T ss_pred ccCC--CCCcceee
Confidence 9987 57899888
No 14
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=352.01 Aligned_cols=301 Identities=19% Similarity=0.383 Sum_probs=244.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|+|||||.+|..+.+++++++.+++|+|||++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++|
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 47999999999999999999999999999999999999998 57999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHH-HHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLL-VGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l-~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
|+||+...+.|++++++.|+||++.+.++...+..++..++ +.|+++++||||++++..++..++++++++|+. ++
T Consensus 195 d~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~ 271 (479)
T 3sm9_A 195 GDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FT 271 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CE
T ss_pred chhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EE
Confidence 99999999999999999999999999998665668899999 778899999999999999999999999999986 89
Q ss_pred EEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHH---------------HHHhhhcCC----------
Q 003275 161 WIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFIS---------------RWKNLKYKE---------- 215 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~---------------~~~~~~~~~---------- 215 (834)
||.+++|........ .....++|++++.++..+.+++++|.. .|+..|.+.
T Consensus 272 wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~ 347 (479)
T 3sm9_A 272 WVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRV 347 (479)
T ss_dssp EEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCB
T ss_pred EEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccC
Confidence 999998865311110 112567999999999999998888764 366555411
Q ss_pred ---CCCC-----CccchhHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHH-HHHHhc
Q 003275 216 ---NSPS-----GFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFL-QTLLRM 286 (834)
Q Consensus 216 ---~~~~-----~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~l~~~ 286 (834)
++.. ........+||||+++|+|||+++.+... .....|.....+ ++.+|+ ++|+++
T Consensus 348 C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~-------------~~~~~c~~~~~~-~~~qL~~~~Lk~v 413 (479)
T 3sm9_A 348 CDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP-------------NTTKLCDAMKIL-DGKKLYKDYLLKI 413 (479)
T ss_dssp CCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST-------------TCSSCCHHHHSC-CHHHHHHHTGGGC
T ss_pred CCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC-------------CCCcCCCCCCCc-ChHHHHHHHhcce
Confidence 0000 11123468999999999999999763111 001122222223 588999 999999
Q ss_pred ccccc------ee-eEEEccCCCCCCCcEEEEEeec----cceEEEEEec
Q 003275 287 NFTGL------SG-EIRFDADKNLVNPAYDVLNIGG----TGSRRIGYWS 325 (834)
Q Consensus 287 ~f~g~------tG-~i~Fd~~g~~~~~~~~I~~~~~----~~~~~vG~w~ 325 (834)
+|++. +| ++.||++|++ ...|+|+||+. ..+++||.|+
T Consensus 414 ~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 414 NFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp CEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred eeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 99998 55 6999999996 58999999973 2367999997
No 15
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.3e-37 Score=352.25 Aligned_cols=326 Identities=21% Similarity=0.380 Sum_probs=252.1
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
+++|+|||||.+|..+.+++++++.+++|+|||++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++
T Consensus 126 ~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~ 205 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHT 205 (496)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 458999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
||+||+...+.|++++++.|+||++.+.++...+..++..++.+|+++ +++||++++...++..+++++++.|+.+ .
T Consensus 206 dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k 284 (496)
T 3ks9_A 206 EGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-E 284 (496)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-C
T ss_pred ccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999999999887666678999999999985 7899999999999999999999999864 3
Q ss_pred eEEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHH---------------HHhhhcCC--------
Q 003275 159 YVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISR---------------WKNLKYKE-------- 215 (834)
Q Consensus 159 ~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~---------------~~~~~~~~-------- 215 (834)
++||.+++|........ .....++|++++.++.++.+++++|... |+..|.+.
T Consensus 285 ~~~i~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~ 360 (496)
T 3ks9_A 285 FSLIGSDGWADRDEVIE----GYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLEN 360 (496)
T ss_dssp CEEEECTTTTTCHHHHT----TCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----
T ss_pred EEEEEechhcccccccc----ccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCcccc
Confidence 68999987754321110 1235689999999999999999888743 65555421
Q ss_pred ---------CCCC----CccchhHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHH
Q 003275 216 ---------NSPS----GFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQT 282 (834)
Q Consensus 216 ---------~~~~----~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 282 (834)
++.. ........+|+||+++|+|||+++.+.... ....|....++ ++.+|+++
T Consensus 361 ~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~-------------~~~~c~~~~~~-~~~qL~~~ 426 (496)
T 3ks9_A 361 PNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG-------------HVGLCDAMKPI-DGSKLLDF 426 (496)
T ss_dssp CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT-------------CSSCCGGGSSC-CHHHHHHH
T ss_pred ccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCC-------------CCCCCcCCCCC-CHHHHHHH
Confidence 0000 001122469999999999999998542110 01123333344 58899999
Q ss_pred HHhcccccceee-EEEccCCCCCCCcEEEEEeec-----cceEEEEEecCCCCcccccccccccCCCCCCCCCccceeee
Q 003275 283 LLRMNFTGLSGE-IRFDADKNLVNPAYDVLNIGG-----TGSRRIGYWSNYSGLSVVAPEILYTKPPNSSSNRHLYSVIW 356 (834)
Q Consensus 283 l~~~~f~g~tG~-i~Fd~~g~~~~~~~~I~~~~~-----~~~~~vG~w~~~~gl~~~~~~~~~~~~~~~~~~~~l~~i~W 356 (834)
|++++|.+.+|+ +.||++|+. ...|+|+||+. ..+++||.|++. .|.+. ...| |
T Consensus 427 Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~~~-~l~i~-----------------~~~i-w 486 (496)
T 3ks9_A 427 LIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGTWHEG-VLNID-----------------DYKI-Q 486 (496)
T ss_dssp HHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEEEETT-EEEEC-----------------TTTC--
T ss_pred HHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEEEeCC-eEEEe-----------------hhhc-c
Confidence 999999999996 999999996 58999999973 236799999732 23321 1235 8
Q ss_pred cCCccccCcc
Q 003275 357 PGEITATPRG 366 (834)
Q Consensus 357 pg~~~~~pr~ 366 (834)
.++..++|+|
T Consensus 487 ~~~~~~vP~~ 496 (496)
T 3ks9_A 487 MNKSGLVPRG 496 (496)
T ss_dssp ----------
T ss_pred cCCCCCCCCC
Confidence 8777777765
No 16
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=4.5e-37 Score=347.18 Aligned_cols=303 Identities=19% Similarity=0.392 Sum_probs=220.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|+|||||.+|..+.+++++++.+++|+|||++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++|
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 68999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhc-CCcEEEeeecCCCCCChH--HHHHHHHHhh-cCCceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 82 DDYGRNGISVLGDALSK-KRAKISYKAPFSPGASRS--AINSLLVGAN-LMESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~-~g~~I~~~~~~~~~~~~~--~~~~~l~~l~-~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
|+||+...+.|.+++++ .|+||++.+.++...... ++...+.+|+ ++++||||++++..++..+++++++.|+.+
T Consensus 196 ~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~- 274 (481)
T 3mq4_A 196 GSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG- 274 (481)
T ss_dssp CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-
Confidence 99999999999999985 799999998887653334 7888999998 589999999999999999999999999864
Q ss_pred CeEEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCCChhHHHHHHH---------------HHhhhcCC-------
Q 003275 158 SYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISR---------------WKNLKYKE------- 215 (834)
Q Consensus 158 ~~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~F~~~---------------~~~~~~~~------- 215 (834)
.++||.++.|....... ......++|++++.++..+.+++++|+.. |+..|.+.
T Consensus 275 ~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~ 350 (481)
T 3mq4_A 275 HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSK 350 (481)
T ss_dssp CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC------
T ss_pred ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCcccc
Confidence 48999999886533221 12246789999999999999998888643 55554321
Q ss_pred ----------CCCC------CccchhHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHH
Q 003275 216 ----------NSPS------GFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQF 279 (834)
Q Consensus 216 ----------~~~~------~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 279 (834)
++.. ........+||||+++|+|||+++.+.... ....|....++ ++.+|
T Consensus 351 ~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~-------------~~~~c~~~~~~-~~~qL 416 (481)
T 3mq4_A 351 KEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD-------------YRGVCPEMEQA-GGKKL 416 (481)
T ss_dssp ------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCHHHHTS-CHHHH
T ss_pred ccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC-------------CCCCCCCCCCc-CHHHH
Confidence 0110 011344579999999999999998532110 01123333334 58899
Q ss_pred HHHHHhccccccee-eEEEccCCCCCCCcEEEEEeec-----cceEEEEEec
Q 003275 280 LQTLLRMNFTGLSG-EIRFDADKNLVNPAYDVLNIGG-----TGSRRIGYWS 325 (834)
Q Consensus 280 ~~~l~~~~f~g~tG-~i~Fd~~g~~~~~~~~I~~~~~-----~~~~~vG~w~ 325 (834)
+++|++++|++.+| ++.||++|++ ...|+|+||+. ..+++||.|+
T Consensus 417 ~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 417 LKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp HHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred HHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 99999999999999 6999999996 48999999972 2468999997
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.97 E-value=3.9e-30 Score=283.31 Aligned_cols=292 Identities=16% Similarity=0.126 Sum_probs=243.9
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|.+||||.+|..+.++++++++.+||+|++.++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN 151 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred cCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999999999999999999998885 67899999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcC--CcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 82 DDYGRNGISVLGDALSKK--RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~--g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
++||+...+.+.+++++. |++|+....++.+. .++...+.+|+++++|+|++.+...++..+++++++.|+...
T Consensus 152 ~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~--~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~-- 227 (387)
T 3i45_A 152 YEYGQSAVARFKELLLAARPEVTFVAEQWPALYK--LDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG-- 227 (387)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--
T ss_pred chHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCC--cCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--
Confidence 999999999999999998 99999888877543 689999999999999999999999999999999999998543
Q ss_pred EEEEeCCC--cccCCCCCCCChhhHhhcccceEEEe-cC-CCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHH
Q 003275 160 VWIATDWL--PSVLDSTEPVDIDTMNLLQGVVALRH-HT-PDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLV 235 (834)
Q Consensus 160 vwi~~~~~--~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~l 235 (834)
+|+.+... ...+.. ...+..+|++.... +. ++++..++|.++|++++ +..|+.+++.+|||++++
T Consensus 228 ~~i~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~Yda~~~~ 296 (387)
T 3i45_A 228 RQVVSMLTGEPEYLNP------LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW-----KEDPFVGSLVGYNTLTAM 296 (387)
T ss_dssp CEEEEEEEESHHHHGG------GGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHH
T ss_pred CeEEeecCCChHHHHH------hhhhccCceEEecccccCCCCHHHHHHHHHHHHHH-----CCCCCcHHHHHHHHHHHH
Confidence 34443221 111111 11134688876632 32 57889999999999998 446788999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee-
Q 003275 236 AHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG- 314 (834)
Q Consensus 236 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~- 314 (834)
++|++++.. .++++|.++|++++|+|++|+++|+++++.......|.+++
T Consensus 297 a~Al~~ag~-----------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 347 (387)
T 3i45_A 297 AVAFEKAGG-----------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTAL 347 (387)
T ss_dssp HHHHHHHTS-----------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEE
T ss_pred HHHHHHhCC-----------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEe
Confidence 999999621 15899999999999999999999997444456777788775
Q ss_pred ccceEEEEEecCCCCccccccccc
Q 003275 315 GTGSRRIGYWSNYSGLSVVAPEIL 338 (834)
Q Consensus 315 ~~~~~~vG~w~~~~gl~~~~~~~~ 338 (834)
+++.+.++.|.+.+|..+.+++..
T Consensus 348 ~~g~~~i~~w~~~~~~~~~p~~~~ 371 (387)
T 3i45_A 348 RDGKGVMVDWRYVDGGSVLPPPEV 371 (387)
T ss_dssp ETTEEEEEEEEEECGGGGSCCHHH
T ss_pred eCCceeEEeeEEeCchhcCCCHHH
Confidence 567799999999888777666543
No 18
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.97 E-value=1.1e-29 Score=277.45 Aligned_cols=279 Identities=17% Similarity=0.198 Sum_probs=240.0
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHH-HHcCCeEEEEEEE-
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWREVIAIFV- 80 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll-~~~~W~~v~iI~~- 80 (834)
++|.+||||.+|..+.++++++++.+||+|++.++++.++. .+||+||+.|++..++.++++++ +++||++|++||.
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 158 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDV 158 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEET
T ss_pred CCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeC
Confidence 46999999999999999999999999999999998888865 56999999999999999999998 6689999999986
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
+++||....+.+.+++++.|++|+... ++.+ ..++...+.++++.++|+|++.++..++..+++++++.|+.. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~ 232 (366)
T 3td9_A 159 EQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---Y 232 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---E
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---e
Confidence 788999999999999999999999887 7654 367888999999999999999999999999999999999864 4
Q ss_pred EEEeCCCcccCCCCCCCChhhHhhcccceEEEecCCC---ChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHH
Q 003275 161 WIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPD---TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAH 237 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~---~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~ 237 (834)
|+.++++... +. .....+..+|++....+.|. .+..++|.++|++++ +..|+.+++.+|||++++++
T Consensus 233 ~~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~~~~~yda~~~~~~ 302 (366)
T 3td9_A 233 ILAGDGADAP-EL----IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY-----GKEPAALNALGYDAYMVLLD 302 (366)
T ss_dssp EEECGGGCST-HH----HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHH
T ss_pred EEeeCCcCCH-HH----HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH-----CCCCchhHHHHHHHHHHHHH
Confidence 6666544321 00 01233578899988877664 678999999999998 45578999999999999999
Q ss_pred HHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcc-cccceeeEEEccCCCCCCCcEEEEEeecc
Q 003275 238 ALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMN-FTGLSGEIRFDADKNLVNPAYDVLNIGGT 316 (834)
Q Consensus 238 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~-f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~ 316 (834)
|++++.. .+++.+.++|++++ |+|++|++.||++|++. ..+.|++++++
T Consensus 303 al~~ag~-----------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g 352 (366)
T 3td9_A 303 AIERAGS-----------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNG 352 (366)
T ss_dssp HHHHHTS-----------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETT
T ss_pred HHHHhCC-----------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECC
Confidence 9999632 15899999999998 99999999999999976 55999999999
Q ss_pred ceEEEEEecCCC
Q 003275 317 GSRRIGYWSNYS 328 (834)
Q Consensus 317 ~~~~vG~w~~~~ 328 (834)
+++.||.|++..
T Consensus 353 ~~~~v~~~~~~~ 364 (366)
T 3td9_A 353 SVDFEAVINPDD 364 (366)
T ss_dssp EEEEEEEECGGG
T ss_pred EEEEEEecChhh
Confidence 999999998753
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.96 E-value=5.5e-29 Score=272.10 Aligned_cols=274 Identities=15% Similarity=0.196 Sum_probs=231.8
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|.+||||.+|..+.++++++++.+||+|+++++++.++.. .||+||+.+++..|+.+++++++..+|++|++|+.|
T Consensus 70 ~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~ 148 (371)
T 4f06_A 70 KEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSD 148 (371)
T ss_dssp TSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCC
Confidence 4689999999999999999999999999999999999988764 489999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHHHhCCCCCCCeE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a~~~g~~~~~~v 160 (834)
++||....+.+++++++.|++|+....++.+. .|++.++.+|+++++|+|++.+. ..++..+++++++.|+...++.
T Consensus 149 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 226 (371)
T 4f06_A 149 YGPGIDAETAFKKTFEAEGGKVVEAVRMPLST--TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVK 226 (371)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCE
T ss_pred cccchhHHHHHHHHHHhcCCceEEEEecCccc--ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcE
Confidence 99999999999999999999999999998654 78999999999999999988765 4678889999999999877777
Q ss_pred EEEeCCCcccCCCCCCCChhhHhhcccceEEEecCC--CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHH
Q 003275 161 WIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHA 238 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~A 238 (834)
++.+......... ....+..+|++...++.+ ++|..++|.++|++++. ....++.++..+||+++++++|
T Consensus 227 ~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~---~~~~~~~~a~~~Yda~~~l~~A 298 (371)
T 4f06_A 227 LMSTGDVVTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGA---KLDEVTMTSVAAYDGARLIYKM 298 (371)
T ss_dssp EEEEGGGGCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTC---CGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcC---CCCCccchHHHHHHHHHHHHHH
Confidence 7665432221110 123356788888877655 57889999999998872 1235678999999999999999
Q ss_pred HHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee
Q 003275 239 LDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG 314 (834)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~ 314 (834)
+++.. ++ .++++++++|++++|.|++|+++||++++.....+.|.+++
T Consensus 299 i~~~a---g~-------------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 299 IEATS---GK-------------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp HHHTT---TS-------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred HHHhc---CC-------------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 98731 11 15899999999999999999999998776666677788876
No 20
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.96 E-value=1e-28 Score=270.72 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=233.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|.+||||.+|..+.++++++++.++|+|+++++++.++. ..+||+||+.+++..++.++++++.++||++|++|+.|
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 149 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTAD 149 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecc
Confidence 68999999999999999999999999999999999999987 56899999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||+...+.+.+++++.|++|+....++.+. .|+...+.++++.++|+|++.++..++..+++++++.|+..+. .+
T Consensus 150 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i 226 (375)
T 3i09_A 150 YAFGKALEKNTADVVKANGGKVLGEVRHPLSA--SDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KL 226 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--SCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EE
T ss_pred cHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCC--ccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eE
Confidence 99999999999999999999999888887543 6788999999999999999999999999999999999998766 44
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCCC-ChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPD-TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALD 240 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 240 (834)
+..+++...+. ....+..+|++...++.++ ++..++|.++|++++ +..|+.+++.+|||++++++|++
T Consensus 227 ~g~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~a~~~Yda~~~~~~Al~ 295 (375)
T 3i09_A 227 AALLMFINDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM-----KKMPSSLQAADYSSVTTYLKAVQ 295 (375)
T ss_dssp EESSCCHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecccchhhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH-----CCCCcHHHHHHHHHHHHHHHHHH
Confidence 44433322110 1112567899888776654 678999999999998 45688899999999999999999
Q ss_pred HHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccc
Q 003275 241 ALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTG 317 (834)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~~ 317 (834)
++.. .+++.|.++|++++|.|++|.+.||++|++. ..+.|+++++++
T Consensus 296 ~ag~-----------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 296 AAGS-----------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp HHTS-----------------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred HhCC-----------------------------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 9632 1589999999999999999999999999876 578899997644
No 21
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.96 E-value=3.6e-29 Score=278.61 Aligned_cols=285 Identities=12% Similarity=-0.000 Sum_probs=226.6
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCC-----C-CCCCceEEccCChHHHHHHHHHHHHHc-----
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLT-----S-LQYPYFLRTTQSDYYQMHAVADLVEYY----- 70 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls-----~-~~~p~~~r~~ps~~~q~~aia~ll~~~----- 70 (834)
+++|.+||||.+|..+.++++++++++||+|+++ +++.++ + ..|+|+||+.|++..++.++++++.++
T Consensus 81 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~ 159 (419)
T 3h5l_A 81 RDNASALIAGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGE 159 (419)
T ss_dssp TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCeEEEccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhcc
Confidence 3789999999999999999999999999999964 444332 2 468999999999999999999999886
Q ss_pred ---CCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHH
Q 003275 71 ---GWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIF 146 (834)
Q Consensus 71 ---~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~ 146 (834)
+|++|++|+.|++||+...+.|.+.+++.|++|+..+.++.+. .|++.++.+|+++++|+|++.+. +.++..++
T Consensus 160 ~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~ 237 (419)
T 3h5l_A 160 FSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV--SDWGPTLAKLRADPPAVIVVTHFYPQDQALFM 237 (419)
T ss_dssp CCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC--SCCHHHHHHHHHSCCSEEEECCCCHHHHHHHH
T ss_pred ccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC--ccHHHHHHHHHhcCCCEEEEccccCchHHHHH
Confidence 9999999999999999999999999999999999988888543 78999999999999999999865 57899999
Q ss_pred HHHHhCCCCCCCeEEEEeCCCcccCCCCCCCChhhHhhcccceEEEec-CCCChhHHHHHHHHHhhhcCCCCCCCc-cch
Q 003275 147 SVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH-TPDTDLKKNFISRWKNLKYKENSPSGF-NSY 224 (834)
Q Consensus 147 ~~a~~~g~~~~~~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-~~~~~~~~~F~~~~~~~~~~~~~~~~~-~~~ 224 (834)
+++++.|+ ...|+.++++... +. .....+..+|++....+ .++++..++|.++|++++ +..+ +.+
T Consensus 238 ~~~~~~g~---~~~~~~~~~~~~~-~~----~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~~ 304 (419)
T 3h5l_A 238 NQFMTDPT---NSLVYLQYGASLA-AF----RDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERY-----GDLSSTAS 304 (419)
T ss_dssp HHHTTSCC---SCEEEECSGGGSH-HH----HHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHH-----CTTSCHHH
T ss_pred HHHHHcCC---CceEEecCCCCcH-HH----HHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHh-----CCCCCcch
Confidence 99999998 3456766654321 00 01223567898876554 346788999999999998 3334 468
Q ss_pred hHHHhhHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCC
Q 003275 225 ALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLV 304 (834)
Q Consensus 225 ~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~ 304 (834)
+..+|||++++++|++++..... . +.+.++.++.++|++++|.|++|+++||++|+..
T Consensus 305 a~~~Yda~~~~~~a~~~a~~~~~-------------~---------g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~ 362 (419)
T 3h5l_A 305 GCQTYSALYAYSIAAALAGGPGA-------------P---------YDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSA 362 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCC-------------T---------TCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBB
T ss_pred hHHHHHHHHHHHHHHHHhcCCcc-------------C---------CCccCHHHHHHHHHhCCcccCceEEEECCCCCcc
Confidence 99999999999999998643100 0 1123689999999999999999999999999843
Q ss_pred ------------CCcEEEEEeeccceEEEEEe
Q 003275 305 ------------NPAYDVLNIGGTGSRRIGYW 324 (834)
Q Consensus 305 ------------~~~~~I~~~~~~~~~~vG~w 324 (834)
...+.|+++++++++.+-.|
T Consensus 363 ~~~~~~~~~~~~~~~~~i~q~q~g~~~~~~V~ 394 (419)
T 3h5l_A 363 WSYPTETNDPSLGMPHIFSQIFDKAEDGVLIA 394 (419)
T ss_dssp CEETTTCSCTTSSEECEEEECCCTTSCCEEEE
T ss_pred ccccCccCCccccCCceEEEeeCCceeeEEEC
Confidence 12345777776666333345
No 22
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.96 E-value=4.3e-28 Score=265.84 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=240.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|.+||||.+|..+.++++++...++|+|++.++++.+++ ..+|++||+.+++..++.++++++.++||++|++|+.|
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 160 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWK 160 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecC
Confidence 58999999999999999999999999999999999998887 45899999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
+++|....+.+.+++++.|++++....++.+. .++...+.++++.++++|++.++...+..+++++++.|+..+ |
T Consensus 161 ~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~ 235 (375)
T 4evq_A 161 YAAGEEMVSGFKKSFTAGKGEVVKDITIAFPD--VEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---L 235 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---E
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEEecCCCC--ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---E
Confidence 99999999999999999999998877776543 578889999998899999999999999999999999998643 4
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCC--CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHAL 239 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al 239 (834)
+.+++... +. -....+..+|++...++.+ +.+..++|.++|++++ +..++.+++.+|||++++++|+
T Consensus 236 ~~~~~~~~--~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~yda~~~~~~al 304 (375)
T 4evq_A 236 WGPGFLTD--GV----EAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY-----KIPPDVFAVQGWDAGQLLDAGV 304 (375)
T ss_dssp EEEGGGTT--TT----HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcCCH--HH----HHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH-----CCCCcHHHHHHHHHHHHHHHHH
Confidence 44432111 11 1223367899998887765 4688999999999998 4568889999999999999999
Q ss_pred HHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceE
Q 003275 240 DALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSR 319 (834)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~ 319 (834)
+++... +.+++.|.++|++++|+|++|+++||++|++. ..+.|+++++++++
T Consensus 305 ~~~g~~---------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~ 356 (375)
T 4evq_A 305 KAVGGD---------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSV 356 (375)
T ss_dssp HHTTTC---------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEE
T ss_pred HHhCCC---------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcE
Confidence 984210 12589999999999999999999999999875 68999999999999
Q ss_pred EEEEecCC
Q 003275 320 RIGYWSNY 327 (834)
Q Consensus 320 ~vG~w~~~ 327 (834)
.||.+-+.
T Consensus 357 ~v~~~~~~ 364 (375)
T 4evq_A 357 NLGLAAPA 364 (375)
T ss_dssp EEEEEECS
T ss_pred Eeeehhhc
Confidence 99998543
No 23
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.96 E-value=1.2e-28 Score=268.21 Aligned_cols=280 Identities=18% Similarity=0.148 Sum_probs=236.9
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHH-HHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll-~~~~W~~v~iI~~d 81 (834)
++|.+||||.+|..+.+++++++..+||+|++.++++.+++..+|++||+.+++..++.++++++ +++||++|++|+.|
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 147 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDK 147 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECS
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 68999999999999999999999999999999999999988778999999999999999999965 66799999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||....+.+.+++++.|++++....++.+ ..++...+.++++.++++|++.++..++..+++++++.|+.. .|
T Consensus 148 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~ 222 (356)
T 3ipc_A 148 TPYGQGLADETKKAANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KL 222 (356)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EE
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cE
Confidence 9999999999999999999998877777644 367888999999999999999999999999999999999865 36
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCC-CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP-DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALD 240 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 240 (834)
+.++++... +. -....+..+|++...++.+ ..+..++|.++|+++. ..|+.+++.+|||++++++|++
T Consensus 223 ~~~~~~~~~-~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~------~~p~~~~~~~yda~~~~~~al~ 291 (356)
T 3ipc_A 223 VSGDGIVSN-EL----ASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAG------FNPEAYTLYSYAAMQAIAGAAK 291 (356)
T ss_dssp EECGGGCSH-HH----HHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHTT------CCCCTTHHHHHHHHHHHHHHHH
T ss_pred EEeccccCH-HH----HHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHcC------CCcchhHHHHHHHHHHHHHHHH
Confidence 666543321 00 0122356789888877664 5678899999998762 2367799999999999999999
Q ss_pred HHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeec---cc
Q 003275 241 ALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGG---TG 317 (834)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~---~~ 317 (834)
++.. .+++.+.++|++.+|+|++|+++||++|++....+.|+++++ +.
T Consensus 292 ~ag~-----------------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~ 342 (356)
T 3ipc_A 292 AAGS-----------------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGK 342 (356)
T ss_dssp HHTC-----------------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSS
T ss_pred HhCC-----------------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCc
Confidence 9622 158999999999999999999999999999888999999994 89
Q ss_pred eEEEEEecCC
Q 003275 318 SRRIGYWSNY 327 (834)
Q Consensus 318 ~~~vG~w~~~ 327 (834)
|+.+..|.+.
T Consensus 343 ~~~~~~~~~~ 352 (356)
T 3ipc_A 343 FTYIQQGSHH 352 (356)
T ss_dssp EEEEEC----
T ss_pred EEEEeccccc
Confidence 9999998654
No 24
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.96 E-value=9.2e-29 Score=271.47 Aligned_cols=271 Identities=14% Similarity=0.110 Sum_probs=232.5
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|.+||||.+|..+.++++++++.++|+|+++++++.++. ..+||+||+.+++..++.++++++.++||++|++|+.|
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD 151 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 68999999999999999999999999999999999999987 46899999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||+...+.+.+++++.|++|+....++.+. .|+...+.++++.++|+|++.+...++..+++++++.|+..+.+ +
T Consensus 152 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~ 228 (379)
T 3n0w_A 152 AAYGDLMNAAIRRELTAGGGQIVGSVRFPFET--QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-K 228 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC--CCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-E
T ss_pred cchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-E
Confidence 99999999999999999999999888887543 67889999999999999999999899999999999999977643 4
Q ss_pred EEeCCCc-ccCCCCCCCChhhHhhcccceEEEecCCC-ChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHH
Q 003275 162 IATDWLP-SVLDSTEPVDIDTMNLLQGVVALRHHTPD-TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHAL 239 (834)
Q Consensus 162 i~~~~~~-~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al 239 (834)
+.+.++. ..+. ....+..+|++...++.++ ++..++|.++|++++ +..|+.+++.+|||++++++|+
T Consensus 229 ~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~~~~~Yda~~~~~~Al 297 (379)
T 3n0w_A 229 VGGMIDILTDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM-----GKMPTNNQAGGYSAALQYLKAV 297 (379)
T ss_dssp EECCBCCHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEecccchHHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH-----CCCCChHHHHHHHHHHHHHHHH
Confidence 4443322 1110 1112568899888776654 678999999999998 4567899999999999999999
Q ss_pred HHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceee-EEEccCCCCCCCcEEEEEeeccc
Q 003275 240 DALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGE-IRFDADKNLVNPAYDVLNIGGTG 317 (834)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~-i~Fd~~g~~~~~~~~I~~~~~~~ 317 (834)
+++.. .+++.|.++|++++|.|+.|. +.|+++|++. ..+.|+++++++
T Consensus 298 ~~ag~-----------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 298 NAIGS-----------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HHHTC-----------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred HHhCC-----------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 99632 158999999999999999986 9999999865 778899997654
No 25
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.96 E-value=2.1e-28 Score=265.15 Aligned_cols=275 Identities=16% Similarity=0.198 Sum_probs=231.1
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHH-HHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll-~~~~W~~v~iI~~d 81 (834)
++|.+||||.+|..+.++++++++.++|+|++.++++.+++..+|++||+.+++..++.++++++ +++||++|++|+.+
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~ 147 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDK 147 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 68999999999999999999999999999999888888876558999999999999999999998 55799999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||....+.+.+++++.|++++....++.+. .++...+.++++.++++|++.+....+..+++++++.|+..+ |
T Consensus 148 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~ 222 (346)
T 1usg_A 148 QQYGEGLARSVQDGLKAANANVVFFDGITAGE--KDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---F 222 (346)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---E
T ss_pred CchHHHHHHHHHHHHHHcCCEEEEEeccCCCC--cCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---E
Confidence 99999999999999999999998776666432 567788999998899999999888889999999999998653 7
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecC-CCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHT-PDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALD 240 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 240 (834)
+.++++... +. -....+..+|++...++. ++.+..++|.++|++++ +..++.+++.+|||++++++|++
T Consensus 223 ~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~~~~~~~yda~~~~~~al~ 292 (346)
T 1usg_A 223 MGPEGVGNA-SL----SNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK-----KDPSGPYVWITYAAVQSLATALE 292 (346)
T ss_dssp EECGGGCCT-TH----HHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT-----CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcH-HH----HHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHHHHHHH
Confidence 776654321 00 012235678998887653 35678899999999887 34577899999999999999999
Q ss_pred HHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee-ccceE
Q 003275 241 ALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG-GTGSR 319 (834)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~-~~~~~ 319 (834)
++.. .+++.|.++|++.+|+|++|+++||++|++....|.|++++ ++.++
T Consensus 293 ~~g~-----------------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~ 343 (346)
T 1usg_A 293 RTGS-----------------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSST 343 (346)
T ss_dssp HHCC-----------------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEE
T ss_pred HhCC-----------------------------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEE
Confidence 9621 15889999999999999999999999999877889999998 77766
Q ss_pred EE
Q 003275 320 RI 321 (834)
Q Consensus 320 ~v 321 (834)
.|
T Consensus 344 ~~ 345 (346)
T 1usg_A 344 KA 345 (346)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 26
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.96 E-value=3.4e-28 Score=264.80 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=236.5
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|.+||||.+|..+.++++++...++|+|++.++++.++... |++||+.+++..++.++++++...||++|++|+.|
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVT 148 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 56899999999999999999999999999999999888887655 99999999999999999999988899999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
++||....+.+.+++++.|++++....++.+ ..++...+.++++.++++|++.++...+..+++++++.|+..+ |
T Consensus 149 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~ 223 (358)
T 3hut_A 149 TDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---V 223 (358)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---E
T ss_pred cHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---E
Confidence 9999999999999999999999887777644 3677889999998999999999999899999999999998653 6
Q ss_pred EEeCCCcccCCCCCCCChhhHhhcccceEEEecCC--CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHH
Q 003275 162 IATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHAL 239 (834)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al 239 (834)
+..+++... .. -....+..+|++...++.+ ..+..++|.++|++++ +..|+.+++.+|||++++++|+
T Consensus 224 ~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~yda~~~~~~al 293 (358)
T 3hut_A 224 YGSSALYSP-KF----IDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY-----GAIPTLFAAHGYDAVGIMLAAV 293 (358)
T ss_dssp EECGGGCSH-HH----HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcccCH-HH----HHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHH
Confidence 666544221 00 0122356889998887766 4788999999999998 4468899999999999999999
Q ss_pred HHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHH-HHHHHHhc-ccccceeeEEEccCCCCCCCcEEEEEeeccc
Q 003275 240 DALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQ-FLQTLLRM-NFTGLSGEIRFDADKNLVNPAYDVLNIGGTG 317 (834)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~l~~~-~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~~ 317 (834)
+++... ++.+ +.++|+++ +|+|++|+++||++|++....+.|+++++++
T Consensus 294 ~~ag~~-----------------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~ 344 (358)
T 3hut_A 294 GRAGPE-----------------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGD 344 (358)
T ss_dssp HHHCTT-----------------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTE
T ss_pred HHhCCC-----------------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCE
Confidence 996321 4677 99999999 9999999999999999767889999999888
Q ss_pred eEEEEEecCC
Q 003275 318 SRRIGYWSNY 327 (834)
Q Consensus 318 ~~~vG~w~~~ 327 (834)
++.+....+.
T Consensus 345 ~~~~~~~~~~ 354 (358)
T 3hut_A 345 FRVIDREGHH 354 (358)
T ss_dssp EEEC------
T ss_pred EEEecccccc
Confidence 8877766543
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.96 E-value=6.6e-28 Score=263.63 Aligned_cols=281 Identities=15% Similarity=0.214 Sum_probs=237.4
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+++|.+||||.+|..+.+++++++..+||+|+++++++.+++. +||+||+.+++..++.++++++.++||++|++|+.|
T Consensus 70 ~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (368)
T 4eyg_A 70 NDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD 148 (368)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3689999999999999999999999999999999888888765 899999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEE
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVW 161 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vw 161 (834)
+++|....+.+.+++++.|++++....++.+. .++...+.++++.++++|++.+....+..+++++++.|+..+++.|
T Consensus 149 ~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~ 226 (368)
T 4eyg_A 149 YAPGNDALAFFKERFTAGGGEIVEEIKVPLAN--PDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKV 226 (368)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS--CCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEE
T ss_pred chHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceE
Confidence 99999999999999999999999888777543 6788999999999999999988888999999999999997665778
Q ss_pred EEeCCCcc--cCCCCCCCChhhHhhcccceEEEecCC--CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHH
Q 003275 162 IATDWLPS--VLDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAH 237 (834)
Q Consensus 162 i~~~~~~~--~~~~~~~~~~~~~~~~~Gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~ 237 (834)
+.++++.. .+.. ..+..+|++...++.+ +++..++|.++| +++. +..++.+++.+|||++++++
T Consensus 227 ~~~~~~~~~~~~~~-------~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~----~~~p~~~~~~~yda~~~~~~ 294 (368)
T 4eyg_A 227 IGPGDVMDDDLLNS-------MGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEF----GQRPGFMAVGGYDGIHLVFE 294 (368)
T ss_dssp EEETTTTCHHHHTT-------CCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHH----SSCCCHHHHHHHHHHHHHHH
T ss_pred EecCcccCHHHHHh-------hhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhC----CCCCChHHHHHHHHHHHHHH
Confidence 88874322 1111 1245789988877765 468899999999 7772 23678899999999999999
Q ss_pred HHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEc-cCCCCCCCcEEEEEee--
Q 003275 238 ALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFD-ADKNLVNPAYDVLNIG-- 314 (834)
Q Consensus 238 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd-~~g~~~~~~~~I~~~~-- 314 (834)
|++++.. . .+++.|.++|++++|+|++|++.|| ++|+. ...+.|++++
T Consensus 295 al~~~g~---~-------------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~ 345 (368)
T 4eyg_A 295 ALKKTGG---K-------------------------ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKV 345 (368)
T ss_dssp HHHHTTT---C-------------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEE
T ss_pred HHHHhCC---C-------------------------CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEec
Confidence 9999521 1 1589999999999999999999999 67764 5778899988
Q ss_pred ccceE--EEEEecC
Q 003275 315 GTGSR--RIGYWSN 326 (834)
Q Consensus 315 ~~~~~--~vG~w~~ 326 (834)
++.++ .+|.|.+
T Consensus 346 ~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 346 DGELYNIEFAKFDA 359 (368)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCeEEEEEeecccc
Confidence 66665 4555543
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.95 E-value=2.8e-27 Score=260.89 Aligned_cols=287 Identities=13% Similarity=0.063 Sum_probs=237.4
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-CCCCceEEccCChHHHHHHHHHHHHH-cCCeEEEEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEY-YGWREVIAIFV 80 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps~~~q~~aia~ll~~-~~W~~v~iI~~ 80 (834)
++|.+||| .+|..+.++++++...+||+|+++++++ +.+ ..+|++||+.+++..++.++++++.. +||++|++|+.
T Consensus 74 ~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 151 (392)
T 3lkb_A 74 FKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVH 151 (392)
T ss_dssp TCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 48999999 6899999999999999999999866544 444 56899999999999999999999866 69999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
|++||....+.+.+++++.|++|+....++.+ ..++...+.++++.++++|++.++...+..+++++++.|+.. .
T Consensus 152 ~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~ 226 (392)
T 3lkb_A 152 PSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---R 226 (392)
T ss_dssp SSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---E
T ss_pred CCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---e
Confidence 99999999999999999999999988877754 367889999999999999999999999999999999999864 3
Q ss_pred EEEeCCCcccCCCCCCCChhhHhhcccceEEEecCC--CChhHHHHHHHHHhhhcCCCCCCCccch----hHHHhhHHHH
Q 003275 161 WIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSY----ALYAYDSVWL 234 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~----~~~~YDav~~ 234 (834)
|+.++++... +. .....+..+|++...++.+ ..+..++|.++|++++ +..++.+ +..+|||+++
T Consensus 227 ~~~~~~~~~~-~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~~~~~yda~~~ 296 (392)
T 3lkb_A 227 HLGAHYTGGP-DL----IALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY-----GRPENFIESVNYTNGMLAAAI 296 (392)
T ss_dssp EEECGGGCSH-HH----HHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT-----TCCHHHHTCHHHHHHHHHHHH
T ss_pred EEEecCcccH-HH----HHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh-----CCCcccccchhHHHHHHHHHH
Confidence 5665543211 00 0122356889998887654 3556789999999988 3344433 7899999999
Q ss_pred HHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcc----cc-------cceeeEEEccCCCC
Q 003275 235 VAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMN----FT-------GLSGEIRFDADKNL 303 (834)
Q Consensus 235 la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~----f~-------g~tG~i~Fd~~g~~ 303 (834)
+++|++++...++. .+++.+.++|++++ |+ |++|+++||++|++
T Consensus 297 ~~~al~~ag~~~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~ 351 (392)
T 3lkb_A 297 AVEAIRRAQERFKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHT 351 (392)
T ss_dssp HHHHHHHHHHHHSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCE
T ss_pred HHHHHHHhhccCCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcC
Confidence 99999998653111 15899999999997 98 99999999998887
Q ss_pred CCCcEEEEEeeccceEEEEEecCCCCcc
Q 003275 304 VNPAYDVLNIGGTGSRRIGYWSNYSGLS 331 (834)
Q Consensus 304 ~~~~~~I~~~~~~~~~~vG~w~~~~gl~ 331 (834)
....+.|+++++++++.||.|....++.
T Consensus 352 ~~~~~~i~~~~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 352 GAEGLRILEAKGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp EECCBEEEEEETTEEEECSCCBCCHHHH
T ss_pred CcccEEEEEEeCCEEEEeccccchhHHH
Confidence 6788999999999999999998776554
No 29
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.95 E-value=1.3e-26 Score=252.83 Aligned_cols=273 Identities=11% Similarity=0.112 Sum_probs=229.0
Q ss_pred CCcEEEECCCChhhHHHHHH--hhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISH--VVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~--~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
++|.+||||.+|..+.++++ +++..+||+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~ 149 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQ 149 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEe
Confidence 58999999999999999999 999999999999988888876 89999999999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
|++||....+.+.+++++.|++|+....++.+ ..++...+.++++.++++|++.++...+..+++++++.|+..+
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~--- 224 (364)
T 3lop_A 150 EDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ--- 224 (364)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---
T ss_pred CchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---
Confidence 99999999999999999999998877777644 3678899999999999999999999999999999999998754
Q ss_pred EEEeCCCcccCCCCCCCChhhH-hhcccceEEEec----CCCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHH
Q 003275 161 WIATDWLPSVLDSTEPVDIDTM-NLLQGVVALRHH----TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLV 235 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~-~~~~Gv~~~~~~----~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~l 235 (834)
|+..+++... ... .... +..+|++....+ .++.+..++|.++|+++++ ....|+.+++.+|||++++
T Consensus 225 ~i~~~~~~~~-~~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~p~~~a~~~yda~~~~ 296 (364)
T 3lop_A 225 LLGLSSIDPG-ILQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGA---KDVDLSFRAVEGFVAAKVL 296 (364)
T ss_dssp EEECTTSCHH-HHH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTC---TTCCCCHHHHHHHHHHHHH
T ss_pred EEEeccCChH-HHH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcC---CCCCCChHHHHHHHHHHHH
Confidence 6666654321 000 1222 567898877532 2567889999999999882 1116788999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhc-cccc-ceeeEEEccCCCCCCCcEEEEEe
Q 003275 236 AHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTG-LSGEIRFDADKNLVNPAYDVLNI 313 (834)
Q Consensus 236 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~g-~tG~i~Fd~~g~~~~~~~~I~~~ 313 (834)
++|++++.. . .+++.|.++|+++ +|+| ++|++.|+++++.......|.++
T Consensus 297 ~~al~~ag~---~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~ 348 (364)
T 3lop_A 297 AEAIRRAGP---K-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVV 348 (364)
T ss_dssp HHHHHHHCS---S-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEE
T ss_pred HHHHHHhCC---C-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEE
Confidence 999999621 1 1589999999999 7999 99999999887666667788888
Q ss_pred eccce
Q 003275 314 GGTGS 318 (834)
Q Consensus 314 ~~~~~ 318 (834)
+++++
T Consensus 349 ~~~~~ 353 (364)
T 3lop_A 349 GPNGL 353 (364)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 76554
No 30
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.95 E-value=2.1e-26 Score=253.71 Aligned_cols=284 Identities=13% Similarity=0.129 Sum_probs=230.9
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH-cCCeEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YGWREVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~-~~W~~v~iI~~ 80 (834)
+++|.+||| .+|..+.++++++++.+||+|+++++++ +. .+|++||+.|++..++.++++++.. +||++|++|+.
T Consensus 74 ~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 149 (391)
T 3eaf_A 74 RYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYD 149 (391)
T ss_dssp TTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred hcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 468999999 6899999999999999999999876654 43 6799999999999999999999866 79999999999
Q ss_pred -cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHH--hhcCCceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 81 -DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVG--ANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 81 -d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~--l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
|++||....+.+.+++++.|++|+....++.+ ..++...+.+ |++.++++|++.++..++..+++++++.|+..+
T Consensus 150 ~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~ 227 (391)
T 3eaf_A 150 SKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF 227 (391)
T ss_dssp TTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE
T ss_pred cCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce
Confidence 99999999999999999999999988888754 3689999999 999999999999999999999999999998653
Q ss_pred CeEEEEeCCCcccCCCCCCCChhhHhhccc-ceEEEecC-----CCChhHHHHHHHHHhhhcCCCCCCCc--cchhHHHh
Q 003275 158 SYVWIATDWLPSVLDSTEPVDIDTMNLLQG-VVALRHHT-----PDTDLKKNFISRWKNLKYKENSPSGF--NSYALYAY 229 (834)
Q Consensus 158 ~~vwi~~~~~~~~~~~~~~~~~~~~~~~~G-v~~~~~~~-----~~~~~~~~F~~~~~~~~~~~~~~~~~--~~~~~~~Y 229 (834)
|+.+++... .+. -....+..+| ++...++. ++.+. .+|.++|++++. ...| +.+++.+|
T Consensus 228 ---~~~~~~~~~-~~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~----~~~p~~~~~~~~~y 294 (391)
T 3eaf_A 228 ---LLTNVWGFD-ERS----PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNG----VSEDQINLRVVQGF 294 (391)
T ss_dssp ---EEECGGGCS-TTH----HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTT----CCGGGCCHHHHHHH
T ss_pred ---EEEeccCCC-HHH----HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhC----CCCcccccHHHHHH
Confidence 455443221 010 0122356889 77777665 34454 689999999882 1333 48899999
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccc--ccee-eEEEccCCCCCCC
Q 003275 230 DSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFT--GLSG-EIRFDADKNLVNP 306 (834)
Q Consensus 230 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~--g~tG-~i~Fd~~g~~~~~ 306 (834)
||++++++|++++...+. ...+++.+.++|++.+|+ |++| +++||++++....
T Consensus 295 da~~~l~~Al~~a~~~g~------------------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~ 350 (391)
T 3eaf_A 295 VNVWLLIKAIESVTSQDL------------------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYR 350 (391)
T ss_dssp HHHHHHHHHHTTSCHHHH------------------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCC
T ss_pred HHHHHHHHHHHHHHhcCC------------------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcce
Confidence 999999999988521100 001589999999998899 9999 9999987666778
Q ss_pred cEEEEEe-eccceEEEEEecCCC
Q 003275 307 AYDVLNI-GGTGSRRIGYWSNYS 328 (834)
Q Consensus 307 ~~~I~~~-~~~~~~~vG~w~~~~ 328 (834)
.+.|+++ +++.++.|+.|....
T Consensus 351 ~~~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 351 KVFIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp CEEEEEECTTSSEEEEEEECCCT
T ss_pred EEEEEEEecCCEEEEeeeecCcc
Confidence 8999999 889999999997544
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.94 E-value=4.6e-27 Score=257.30 Aligned_cols=269 Identities=13% Similarity=0.125 Sum_probs=216.6
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCC-CCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~-~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
+++|.+||||.+|..+.++++++++.++|+|++.++++.+++. .+||+||+.|++..+..+++.++++++| +|++|+.
T Consensus 71 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~ 149 (374)
T 3n0x_A 71 DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQ 149 (374)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEE
T ss_pred hCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeC
Confidence 3689999999999999999999999999999988888888874 5899999999999999999988888998 7999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCC-----ceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME-----SRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
|++||+...+.+.+.+++.|++|+....++.+. .|++.++.+|++++ +|+|++.+..... .+.++.+.++.
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~--~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~ 225 (374)
T 3n0x_A 150 DYAFGRDGVAAFKEALAKTGATLATEEYVPTTT--TDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPK 225 (374)
T ss_dssp SSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTC--CCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGG
T ss_pred CchHHHHHHHHHHHHHHHcCCEEeeeecCCCCC--ccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchh
Confidence 999999999999999999999999988887553 68999999999988 9999887443222 23455666665
Q ss_pred CCCeEEEEeCCCcccCCCCCCCChhhHhhcccceEEEec---CCCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHH
Q 003275 156 AGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH---TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSV 232 (834)
Q Consensus 156 ~~~~vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~---~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav 232 (834)
..++.++....... . ........|+.+...+ .++++..++|.++|++++ +..|+.+++.+|||+
T Consensus 226 ~~g~~~~~~~~~~~--~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~-----g~~p~~~a~~~Yda~ 292 (374)
T 3n0x_A 226 RYGIELSTGGNILP--A------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF-----NAPPDFFTAGGFSAA 292 (374)
T ss_dssp GGTEEEEECCCCTT--G------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHH
T ss_pred hcCCeeeeccccch--h------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH-----CCCCChhHHHHHHHH
Confidence 55555544322111 0 0112445677776554 346788999999999998 456889999999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEE
Q 003275 233 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLN 312 (834)
Q Consensus 233 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~ 312 (834)
+++++|++++.. .+++.|.++|++++|+|++|+++||++++.....+.|++
T Consensus 293 ~~l~~Al~~ag~-----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~ 343 (374)
T 3n0x_A 293 MAVVTAVQKAKS-----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFK 343 (374)
T ss_dssp HHHHHHHHHHTS-----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEE
T ss_pred HHHHHHHHHhCC-----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEE
Confidence 999999999632 158999999999999999999999964334557889999
Q ss_pred eeccc
Q 003275 313 IGGTG 317 (834)
Q Consensus 313 ~~~~~ 317 (834)
++..+
T Consensus 344 ~~~~~ 348 (374)
T 3n0x_A 344 VKVDP 348 (374)
T ss_dssp EECCT
T ss_pred EEeCC
Confidence 97543
No 32
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=4.8e-27 Score=250.25 Aligned_cols=273 Identities=24% Similarity=0.396 Sum_probs=193.2
Q ss_pred CCCCceEEEecCccccccceeccC------CCCceeeeeHHHHHHHHHhCCCCcCEEEEe---cCCCCC-CCChHHHHHH
Q 003275 371 NNGMPLRIAVPNRVSYNEFVAKDK------SPPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNGKR-NPIYNDIVQQ 440 (834)
Q Consensus 371 ~~g~~lrv~~~~~~~~~p~~~~~~------~~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~~~-n~s~~~~~~~ 440 (834)
..+++||||+.. ++||.+.+. +++++.||++||++++++++|++++++.++ +|.... +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 346789999953 467777541 257899999999999999999885555443 222222 5789999999
Q ss_pred HHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEecCC-CCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecc
Q 003275 441 VALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQK-LKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHR 519 (834)
Q Consensus 441 l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~-~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~ 519 (834)
|.+|++|+++++++++++|.+.++||.||+..+.+++++++. ...++|.|+.||+.
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~----------------------- 143 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL----------------------- 143 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc-----------------------
Confidence 999999999999999999999999999999999999999876 56789999999981
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhc
Q 003275 520 FNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLIS 599 (834)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~ 599 (834)
.|+ |++++...|++++||..
T Consensus 144 ------------------------------~p~------------------------------tv~~~~~~i~~~~dL~g 163 (312)
T 1yae_A 144 ------------------------------VPR------------------------------GSERMESPIDSADDLAK 163 (312)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred ------------------------------CCc------------------------------ccccccCCCCCHHHHhh
Confidence 010 45566678999999983
Q ss_pred C-CCCeeEeeCchhhHHHHhhhccc-----------ccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC
Q 003275 600 S-TEPIGVQDGSFAWNYLVDELKIA-----------ESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 667 (834)
Q Consensus 600 ~-~~~v~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 667 (834)
. +.++|+..++....++.+. ... ..+++.+.+.++++++|.+ |+ ||++.+...+.+++++ .
T Consensus 164 ~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~-~ 236 (312)
T 1yae_A 164 QTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQR-N 236 (312)
T ss_dssp CSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTT-C
T ss_pred ccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhc-C
Confidence 2 1268877666566666431 111 1245668899999999999 89 9999999999999887 6
Q ss_pred ccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcCCCCCCCCCCCCCCCCCccccc
Q 003275 668 CEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLK 739 (834)
Q Consensus 668 ~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~~~~~~~~~~~~~l~l~ 739 (834)
|++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...... ++..++++
T Consensus 237 ~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~---~~~~~~~~ 305 (312)
T 1yae_A 237 CNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK---EASALGVQ 305 (312)
T ss_dssp TTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC-----------------
T ss_pred CCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc---cchhhhhh
Confidence 9999999888888999999999999999999999999999999999999998899876554 44455544
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.94 E-value=1.5e-26 Score=254.59 Aligned_cols=283 Identities=14% Similarity=0.163 Sum_probs=230.6
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCC--CCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLT--SLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls--~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
++|.+||||.+|..+.++.+++++.+||+|++.++++.++ ...+|++||+.+++..++.++++++.++||++|++|+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~ 167 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGF 167 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4799999999999999999999999999999998888887 35689999999999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
|++||+...+.+.+++++.|++|+....++.+ ..++...+.++++.++++|++.++..++..+++++++.|+..+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~--- 242 (386)
T 3sg0_A 168 SDAYGEGYYKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA--- 242 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---
T ss_pred CchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---
Confidence 99999999999999999999999877777644 3678889999999999999999998999999999999998743
Q ss_pred EEEeCCCcccCCCCCCCChhhHhhcccceEEEec------CC-CC---hhHHHHHHHHHhhhcCCCCCCCccchhHHHhh
Q 003275 161 WIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH------TP-DT---DLKKNFISRWKNLKYKENSPSGFNSYALYAYD 230 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~------~~-~~---~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YD 230 (834)
++..+++... +. -....+..+|++....+ .| .. +..++|.++|+++++ ...++.++..+||
T Consensus 243 ~~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~p~~~~~~~yd 313 (386)
T 3sg0_A 243 IYQTHGVATE-EF----IKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANG----GAAPTIFGVHLWD 313 (386)
T ss_dssp EECCGGGCSH-HH----HHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTT----TCCCCHHHHHHHH
T ss_pred EEeccccCCH-HH----HHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhC----CCCCChhHHHHHH
Confidence 5555443221 00 01223567898877642 12 22 457999999999882 2257889999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhc-ccccceeeEEEccCCCC--CCCc
Q 003275 231 SVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTGLSGEIRFDADKNL--VNPA 307 (834)
Q Consensus 231 av~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~g~tG~i~Fd~~g~~--~~~~ 307 (834)
+++++++|++++.+.... | .+.+++.+.++|+++ +|+|++|+++|+++++. ....
T Consensus 314 a~~~~~~al~~a~~~~~~-------------g---------~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~ 371 (386)
T 3sg0_A 314 SMTLVENAIPAALKAAKP-------------G---------TPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERS 371 (386)
T ss_dssp HHHHHHHHHHHHHHHCCT-------------T---------SHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGG
T ss_pred HHHHHHHHHHHhhhccCC-------------C---------CcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCc
Confidence 999999999998654210 0 122478999999999 89999999999876543 3456
Q ss_pred EEEEEeeccceEEE
Q 003275 308 YDVLNIGGTGSRRI 321 (834)
Q Consensus 308 ~~I~~~~~~~~~~v 321 (834)
+.|+++++++++.+
T Consensus 372 ~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 372 AFLIEIRDGAFRLK 385 (386)
T ss_dssp CEEEEEETTEEEEC
T ss_pred eEEEEEECCEEEec
Confidence 89999998887654
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.94 E-value=7.5e-26 Score=246.63 Aligned_cols=281 Identities=13% Similarity=0.095 Sum_probs=227.5
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||||.+|..+.++.+++.+.++|+|++.++ + +....+|++||+.+++..++.++++++.++||++|++|+.|+
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~ 145 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSD 145 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 48999999999999999999999999999998877 4 334567999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEE
Q 003275 83 DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 162 (834)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi 162 (834)
+||+...+.+.+++++.|++++....++.+ ..++...+.++++.++++|++.+....+..+++++++.|+..+ ++
T Consensus 146 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i 220 (362)
T 3snr_A 146 SYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IY 220 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EE
Confidence 999999999999999999999887777654 3677888999998999999999889999999999999998754 35
Q ss_pred EeCCCcccCCCCCCCChhhHhhcccceEEEec----------CCCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHH
Q 003275 163 ATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH----------TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSV 232 (834)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~----------~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav 232 (834)
...++... .. .....+..+|++....+ .|..+..++|.++|++++. ...++.++..+|||+
T Consensus 221 ~~~g~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~p~~~~~~~yda~ 291 (362)
T 3snr_A 221 QTHGAASM-DF----IRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYG----PSSRSQFAGHSYDAF 291 (362)
T ss_dssp ECGGGCSH-HH----HHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHC----TTCCCHHHHHHHHHH
T ss_pred eccCcCcH-HH----HHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhC----CCCCCchhHhHHHHH
Confidence 55443221 00 01233567898887642 1223568999999999882 225788999999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhc-ccccceeeEEEccCCCC--CCCcEE
Q 003275 233 WLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTGLSGEIRFDADKNL--VNPAYD 309 (834)
Q Consensus 233 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~g~tG~i~Fd~~g~~--~~~~~~ 309 (834)
+++++|++++.+.... +.+.++..|.++|+++ +|+|++|+++|+++++. ....+.
T Consensus 292 ~~~~~al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~ 349 (362)
T 3snr_A 292 KVLERVVPVALKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRI 349 (362)
T ss_dssp HHHHHHHHHHHHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCE
T ss_pred HHHHHHHHHhhccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeE
Confidence 9999999998654210 0122589999999999 89999999999987433 346689
Q ss_pred EEEeeccceEEE
Q 003275 310 VLNIGGTGSRRI 321 (834)
Q Consensus 310 I~~~~~~~~~~v 321 (834)
|+++++++++.|
T Consensus 350 i~~~~~G~~~~v 361 (362)
T 3snr_A 350 LLTVKNGKYVIV 361 (362)
T ss_dssp EEEEETTEEEEC
T ss_pred EEEEECCEEEEc
Confidence 999998877654
No 35
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.94 E-value=1.2e-25 Score=244.17 Aligned_cols=273 Identities=20% Similarity=0.258 Sum_probs=218.3
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCC-eEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGW-REVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W-~~v~iI~~ 80 (834)
+++|.+|+||.+|..+.++++++++.++|+|+++++++.++. ..+|+||+.+++..|+.++++++...+| +++++++.
T Consensus 73 ~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (353)
T 4gnr_A 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTD 151 (353)
T ss_dssp TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred hCCceEEeccccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 457899999999999999999999999999999999998875 4589999999999999999999866544 45554444
Q ss_pred c-CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 81 D-DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 81 d-~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
+ ++||++..+.+.+ +.|++|+..+.++.+. .|++.++.+|++.++|+|++.+...++..++++++++|+..+
T Consensus 152 ~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~-- 224 (353)
T 4gnr_A 152 NASDYAKGIAKSFRE---SYKGEIVADETFVAGD--TDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP-- 224 (353)
T ss_dssp TTCHHHHHHHHHHHH---HCCSEEEEEEEECTTC--CCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC--
T ss_pred CchHHHHHHHHHHHH---HcCCEEEEEEeeCCCC--CCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc--
Confidence 4 4588877766654 3588999998888654 689999999999999999999999999999999999998654
Q ss_pred EEEEeCCCcccCCCCCCCChhhHhhcccceEEEecCC---CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHH
Q 003275 160 VWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP---DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVA 236 (834)
Q Consensus 160 vwi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~---~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la 236 (834)
|+..+++...... .....+..+|++....+.+ .++..++|.++|++++ +..|+.++.++|||+++++
T Consensus 225 -~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~a~~~Yda~~~la 294 (353)
T 4gnr_A 225 -IVGGDGFNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY-----NEEPSTFAALAYDSVHLVA 294 (353)
T ss_dssp -EEECGGGCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHH
T ss_pred -EEEecccccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh-----CCCCChhHHHHHHHHHHHH
Confidence 4554433221000 0011245677777765544 4677899999999999 5568899999999999999
Q ss_pred HHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhc-ccccceeeEEEccCCCCCCCcEEEEEeec
Q 003275 237 HALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTGLSGEIRFDADKNLVNPAYDVLNIGG 315 (834)
Q Consensus 237 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~ 315 (834)
+|++++ .++.++.++|+++ +|+|++|+++||++|++. ..+.|+++++
T Consensus 295 ~Ai~~a-------------------------------~~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~ 342 (353)
T 4gnr_A 295 NAAKGA-------------------------------KNSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNN 342 (353)
T ss_dssp HHHTTC-------------------------------SSHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEET
T ss_pred HHHhcC-------------------------------CCHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEEC
Confidence 999751 0478899999988 599999999999999875 6677999998
Q ss_pred cceEEEEEe
Q 003275 316 TGSRRIGYW 324 (834)
Q Consensus 316 ~~~~~vG~w 324 (834)
++++.+...
T Consensus 343 Gk~~~~~~v 351 (353)
T 4gnr_A 343 GKVEAAEVV 351 (353)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 888776544
No 36
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.93 E-value=8e-25 Score=240.53 Aligned_cols=281 Identities=12% Similarity=0.018 Sum_probs=225.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||||.+|..+.++.+++.+.++|+|++.++.. ...++++||+.+++..++.++++++...+|++|++|+.++
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~ 150 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDY 150 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESS
T ss_pred CCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCC
Confidence 6899999999999888999999999999999866421 1246899999999999999999999999999999999988
Q ss_pred CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEE
Q 003275 83 DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 162 (834)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi 162 (834)
+||....+.+.+++++.|+++.....++...+..++...+.+|++.++++|++.++...+..+++++++.|+.++.+.++
T Consensus 151 ~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~ 230 (385)
T 1pea_A 151 IYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIA 230 (385)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEE
Confidence 89999999999999999999987655653235578899999998889999999887888999999999999875444455
Q ss_pred EeCCCcccCCCCCCCChhhHhhcccceEEEecCC--CChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHHHHH
Q 003275 163 ATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALD 240 (834)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 240 (834)
..++....+.. ...+..+|++...++.+ +++..++|.++|+++++ ....++.+++.+|||++++++|++
T Consensus 231 ~~~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g---~~~~~~~~~~~~yda~~~~~~Al~ 301 (385)
T 1pea_A 231 SLTTSEAEVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFP---ENATITAWAEAAYWQTLLLGRAAQ 301 (385)
T ss_dssp ESSCCHHHHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSC---TTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecccchHHHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhC---CCCCCChHHHHHHHHHHHHHHHHH
Confidence 44322211111 11146789988876654 57788999999999872 112467899999999999999999
Q ss_pred HHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEe-eccceE
Q 003275 241 ALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNI-GGTGSR 319 (834)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~-~~~~~~ 319 (834)
++.. .+++.|.++|++++|+|++|+++||++++.....+.|+++ +++.++
T Consensus 302 ~ag~-----------------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~ 352 (385)
T 1pea_A 302 AAGN-----------------------------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQ 352 (385)
T ss_dssp HHTS-----------------------------CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEE
T ss_pred HhCC-----------------------------CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEE
Confidence 9621 1589999999999999999999999855444567888888 677777
Q ss_pred EEEEe
Q 003275 320 RIGYW 324 (834)
Q Consensus 320 ~vG~w 324 (834)
.|...
T Consensus 353 ~v~~~ 357 (385)
T 1pea_A 353 VRWQS 357 (385)
T ss_dssp EEEEC
T ss_pred EeecC
Confidence 76554
No 37
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=3.8e-25 Score=228.91 Aligned_cols=233 Identities=24% Similarity=0.413 Sum_probs=192.3
Q ss_pred CCCceEEEecCccccccceeccCC------CCceeeeeHHHHHHHHHhCCCCcCEEEEec---CCCCC-CCChHHHHHHH
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKS------PPGVKGYCIDVFEAAVNLLPYPVPHNYIMY---GNGKR-NPIYNDIVQQV 441 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~------~~~~~G~~~dll~~l~~~l~~~~~~~~~~~---~~~~~-n~s~~~~~~~l 441 (834)
++++||||+.. ++||.+.+.. ++++.||++||++++++++|++++++.+|. |.... +.+|++++.+|
T Consensus 2 ~~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 36889999954 4677776543 489999999999999999999966665542 11111 46899999999
Q ss_pred HhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccC
Q 003275 442 ALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFN 521 (834)
Q Consensus 442 ~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~ 521 (834)
.+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998765
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCC
Q 003275 522 NEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISST 601 (834)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 601 (834)
+|++++||. +
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~--g 129 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLA--K 129 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHH--T
T ss_pred --------------------------------------------------------------------cccCHHHhc--c
Confidence 578999998 5
Q ss_pred CC---eeEeeCchhhHHHHhhhccc-----------ccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC
Q 003275 602 EP---IGVQDGSFAWNYLVDELKIA-----------ESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 667 (834)
Q Consensus 602 ~~---v~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 667 (834)
.+ +|+..++....++.+. +.. ...++.+++.++++++|.+ |+ |+++.+...+.+++++ .
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~-~ 202 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQR-N 202 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHH-C
T ss_pred CCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcC-C
Confidence 44 8877777777766432 111 1234567899999999999 88 9999999999998888 8
Q ss_pred ccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcCCCCCC
Q 003275 668 CEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECS 723 (834)
Q Consensus 668 ~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~ 723 (834)
|++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|+
T Consensus 203 ~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 203 CNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp TTEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred ceEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 99999999888899999999999999999999999999999999999999987887
No 38
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.92 E-value=9.3e-26 Score=236.62 Aligned_cols=247 Identities=21% Similarity=0.415 Sum_probs=189.9
Q ss_pred CCCCCceEEEecCccccccceeccC---CCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCC----CCCChHHHHHHHH
Q 003275 370 PNNGMPLRIAVPNRVSYNEFVAKDK---SPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK----RNPIYNDIVQQVA 442 (834)
Q Consensus 370 ~~~g~~lrv~~~~~~~~~p~~~~~~---~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~----~n~s~~~~~~~l~ 442 (834)
|.+|++||||++..++|++|..... +.+++.|+++|+++++++.+|++ |+++.+.++. .+++|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHh
Confidence 5679999999998888887754321 12478999999999999999988 5555544332 3568999999999
Q ss_pred hCcccEEeeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCC
Q 003275 443 LNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNN 522 (834)
Q Consensus 443 ~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 522 (834)
+|++|+++++++++++|.+.++||.||+.++.+++++++....++.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~---------------------------------- 148 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLS---------------------------------- 148 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTT----------------------------------
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCccccccc----------------------------------
Confidence 9999999999999999999999999999999999999765211100
Q ss_pred CCCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCC
Q 003275 523 EFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTE 602 (834)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 602 (834)
....++++||. .+.
T Consensus 149 -----------------------------------------------------------------dl~~~~~~~l~-~~~ 162 (284)
T 2a5s_A 149 -----------------------------------------------------------------DKKFQRPHDYS-PPF 162 (284)
T ss_dssp -----------------------------------------------------------------SHHHHSGGGSS-SCC
T ss_pred -----------------------------------------------------------------ccccCChhHcC-CCc
Confidence 00112333442 267
Q ss_pred CeeEeeCchhhHHHHhhhcccccceEec--CCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcC-CccEEEeC--Ccc
Q 003275 603 PIGVQDGSFAWNYLVDELKIAESRLVKL--KNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKT-NCEFRTVG--QEF 677 (834)
Q Consensus 603 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~~l~~v~--~~~ 677 (834)
++|+..++.....+.+.+......++.+ .+.++++++|.+ |++||++.+.+.+.+++++. .|++.+++ ..+
T Consensus 163 ~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (284)
T 2a5s_A 163 RFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIF 238 (284)
T ss_dssp CEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGG
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEEeCCcccc
Confidence 8997754444555543221111134455 789999999999 99999999999999988763 47888884 567
Q ss_pred cccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcCCCCCC
Q 003275 678 TKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECS 723 (834)
Q Consensus 678 ~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~ 723 (834)
...+++++++|+++|++.||++|.++.++|.+++|.+||+.. .|+
T Consensus 239 ~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 239 ATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG-ICH 283 (284)
T ss_dssp GCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC-CCC
T ss_pred ccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc-cCC
Confidence 778899999999999999999999999999999999999974 675
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=4.4e-25 Score=232.31 Aligned_cols=234 Identities=20% Similarity=0.374 Sum_probs=186.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCC----------CCCChHHHHHHHHh
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK----------RNPIYNDIVQQVAL 443 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~----------~n~s~~~~~~~l~~ 443 (834)
+.|+||+ ...|+||...+. ++++.||++||++++++++|++ |+++...+++ .+++|++++.+|.+
T Consensus 41 ~~l~vg~--~~~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGP--NDTSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEE--C--------CEE-EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeeccc--CCCCCCcccccc-ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 5788888 455777776554 6789999999999999999988 5555433221 12479999999999
Q ss_pred CcccEEeeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCC
Q 003275 444 NKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNE 523 (834)
Q Consensus 444 g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~ 523 (834)
|++|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 116 g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~----------------------------------------- 154 (292)
T 1pb7_A 116 GQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT----------------------------------------- 154 (292)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-----------------------------------------
T ss_pred CCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-----------------------------------------
Confidence 999999999999999999999999999999999998764
Q ss_pred CCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCC--
Q 003275 524 FRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISST-- 601 (834)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~-- 601 (834)
.+++++||...+
T Consensus 155 ------------------------------------------------------------------~i~~~~dl~~~g~~ 168 (292)
T 1pb7_A 155 ------------------------------------------------------------------RITGINDPRLRNPS 168 (292)
T ss_dssp ------------------------------------------------------------------CCCSTTCHHHHSCB
T ss_pred ------------------------------------------------------------------CCCCCcCccccCcc
Confidence 345566665223
Q ss_pred -CC-eeEeeCchhhHHHHhhhcc----cccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCC
Q 003275 602 -EP-IGVQDGSFAWNYLVDELKI----AESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQ 675 (834)
Q Consensus 602 -~~-v~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~ 675 (834)
.. +|+..++....++.+.... +..+++.+.+.++++++|.+ |++||++.+...+.+++++ +|++.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~-~~~l~~~~~ 243 (292)
T 1pb7_A 169 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQ-KCDLVTTGE 243 (292)
T ss_dssp TTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHH-CTTEEECSS
T ss_pred cceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhc-CCCEEEcCc
Confidence 23 5777888777776532111 12345568899999999999 9999999999999999888 799999998
Q ss_pred cccccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcCCCCCCC
Q 003275 676 EFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSM 724 (834)
Q Consensus 676 ~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~~ 724 (834)
.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|+.
T Consensus 244 ~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 244 LFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp CSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred cccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 8888899999999999999999999999999999999999999888963
No 40
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=2.5e-24 Score=226.97 Aligned_cols=216 Identities=23% Similarity=0.433 Sum_probs=178.2
Q ss_pred ceeeeeHHHHHHHHHhCCCCcCEEEEecCCCC----CCCChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeece
Q 003275 398 GVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK----RNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESG 473 (834)
Q Consensus 398 ~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~----~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~ 473 (834)
++.||++||++++++++|++ ++++++.+++ .+.+|++++++|.+|++|+++++++++++|.+.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 47899999999999999988 5554443321 35689999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccCCCcccc
Q 003275 474 LVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVS 553 (834)
Q Consensus 474 ~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 553 (834)
.+++++++.
T Consensus 145 ~~i~~~~~~----------------------------------------------------------------------- 153 (294)
T 2rc8_A 145 LGILVRTRG----------------------------------------------------------------------- 153 (294)
T ss_dssp EEEEEETTS-----------------------------------------------------------------------
T ss_pred eEEEEECCC-----------------------------------------------------------------------
Confidence 999998765
Q ss_pred cchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhh----cCCCCeeEeeCchhhHHHHhhhcccc--cce
Q 003275 554 SLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLI----SSTEPIGVQDGSFAWNYLVDELKIAE--SRL 627 (834)
Q Consensus 554 ~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~----~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~ 627 (834)
..+++++||. ..+.++|+..|+....++.+...... -+.
T Consensus 154 -----------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~ 198 (294)
T 2rc8_A 154 -----------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRR 198 (294)
T ss_dssp -----------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGG
T ss_pred -----------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHH
Confidence 2567777776 24788999999998888865321100 112
Q ss_pred EecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcC-CccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhhhcc
Q 003275 628 VKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKT-NCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSEN 706 (834)
Q Consensus 628 ~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~ 706 (834)
..+.+.++++++|.++ +|++||++.+...+.+++++. .|++.++++.+...+++++++|+++|++.||++|.+|.++
T Consensus 199 ~~~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~ 276 (294)
T 2rc8_A 199 YNVPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSH 276 (294)
T ss_dssp GCBSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3478999999999873 368999999999999988763 5789999988888899999999999999999999999999
Q ss_pred ccHHHHHHhhcCCCCCC
Q 003275 707 GDLQKIHNKWLTYNECS 723 (834)
Q Consensus 707 G~~~~i~~kw~~~~~c~ 723 (834)
|.+++|.+||+....|+
T Consensus 277 G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 277 GFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp THHHHHHHHHCCC----
T ss_pred CCHHHHHHhhcCCCCCC
Confidence 99999999999988886
No 41
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.91 E-value=2.4e-24 Score=220.48 Aligned_cols=224 Identities=13% Similarity=0.181 Sum_probs=185.8
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC-CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l-~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
+.++|+||+ .+.|+||.+.+. ++++.||++||+++++++| |++ +++++ ..|++++.+|.+|++|+++
T Consensus 7 ~~~tl~vg~--~~~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGT--GTQFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYK--FKFKT-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHTCTTEE--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEE--CCCCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCe--EEEEE-------CCHHHHHHHHHCCCCCEec
Confidence 457899999 567999998875 7899999999999999998 877 55554 3599999999999999999
Q ss_pred eeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCc
Q 003275 451 GDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 530 (834)
Q Consensus 451 ~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 530 (834)
+++++|++|.+.++||.||+.....+++.++.
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------ 106 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDS------------------------------------------------ 106 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETT------------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEecc------------------------------------------------
Confidence 99999999999999999977665554444333
Q ss_pred chhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCc
Q 003275 531 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 610 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 610 (834)
...+++++||. |++||+..|+
T Consensus 107 ---------------------------------------------------------~~~~~~~~dL~--g~~v~v~~gs 127 (243)
T 4gvo_A 107 ---------------------------------------------------------NNSINSTKDLA--GKRVITSATS 127 (243)
T ss_dssp ---------------------------------------------------------CCSCSSGGGGT--TCEEEECTTC
T ss_pred ---------------------------------------------------------ccccCchHHhc--CCeEEEecCc
Confidence 14788999996 8999999998
Q ss_pred hhhHHHHhh---hcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccceEEEEc
Q 003275 611 FAWNYLVDE---LKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQ 687 (834)
Q Consensus 611 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~ 687 (834)
....++... ..........+.+.++++++|.. |++|+++.+...+.++.++...++.++++.+...+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (243)
T 4gvo_A 128 NGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLG 203 (243)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEEC
T ss_pred hHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEe
Confidence 776666432 12222233456788899999999 99999999998888888775567888888888889999999
Q ss_pred CCCc-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 688 RDSP-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 688 k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
|++| |++.||++|.+|.++|.+++|.+|||+
T Consensus 204 k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 204 KDETKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 9998 999999999999999999999999997
No 42
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=5.3e-24 Score=217.89 Aligned_cols=220 Identities=21% Similarity=0.296 Sum_probs=188.0
Q ss_pred CceEEEecCccccccceecc--CCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 374 MPLRIAVPNRVSYNEFVAKD--KSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~--~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
++|+||+ .+.|+||.+.+ ++++++.||++||++++++++|++ +++++ ..|++++.+|.+|++|++++
T Consensus 12 g~L~Vg~--~~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~-------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVAT--SPDYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILS-------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEE--CCCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEE-------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEE--CCCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEec-------ccHHHHHHHHHcCCCCcccc
Confidence 5799999 56789998752 346889999999999999999988 55554 45999999999999999999
Q ss_pred eeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 452 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 452 ~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
++++|++|.+.++||.||+....++++++..
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~------------------------------------------------- 111 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKAD------------------------------------------------- 111 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGG-------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCcccccccccc-------------------------------------------------
Confidence 9999999999999999999999999998765
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
...+++++||. +++||+..|+.
T Consensus 112 --------------------------------------------------------~~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 112 --------------------------------------------------------VEKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp --------------------------------------------------------TTTCCSHHHHH--TSEEEEETTSH
T ss_pred --------------------------------------------------------cccccccccCC--CCEEEecCCcH
Confidence 13678899997 88999999999
Q ss_pred hhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEE--eC-CcccccceEEEEcC
Q 003275 612 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRT--VG-QEFTKSGWGFAFQR 688 (834)
Q Consensus 612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~--v~-~~~~~~~~~~~~~k 688 (834)
...++.+. .+..+++.+++.++++++|.+ |++|+++.+.....+++.+ +..+.. +. ......+++++++|
T Consensus 134 ~~~~l~~~--~~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~k 206 (243)
T 4h5g_A 134 PESMVKEQ--LPKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAK-NAGLAVATVSLKMKDGDANAVALRK 206 (243)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHH-CTTEEECSCCCCCCSSCCBCCEEES
T ss_pred HHHHHHHh--cccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHH-CCCCceeeccCCcccCceEEEEEeC
Confidence 88888653 345788899999999999999 9999999998888887776 443332 22 34445678999999
Q ss_pred CCc-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 689 DSP-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 689 ~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
++| |++.||++|.+|.++|.+++|.+||+.
T Consensus 207 ~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 207 NSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 998 999999999999999999999999987
No 43
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.90 E-value=4.9e-23 Score=213.51 Aligned_cols=232 Identities=24% Similarity=0.428 Sum_probs=187.5
Q ss_pred CCceEEEecCccccccceeccCC------CCceeeeeHHHHHHHHHhCCCCcCEEEEe---cCCCCCCC-ChHHHHHHHH
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKS------PPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNGKRNP-IYNDIVQQVA 442 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~------~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~~~n~-s~~~~~~~l~ 442 (834)
+++|+|++. .++||.+.+.+ ++++.||++||++++++++|++++++..+ +|....++ +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 578999994 47888887642 37899999999999999999885444432 23323333 7999999999
Q ss_pred hCcccEEeeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCC
Q 003275 443 LNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNN 522 (834)
Q Consensus 443 ~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 522 (834)
+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998764
Q ss_pred CCCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCC
Q 003275 523 EFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTE 602 (834)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 602 (834)
++++++||. ++
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 578899997 66
Q ss_pred C---eeEe-eCchhhHHHHhhhcc-----------cccceEecCCHHHHHHHH--hcCCCCCceEEEEechhhHHHHhhc
Q 003275 603 P---IGVQ-DGSFAWNYLVDELKI-----------AESRLVKLKNMEEYSIAL--ARGPKGGGVAAIVDELPYIELFMSK 665 (834)
Q Consensus 603 ~---v~~~-~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~l--~~~~~~g~~~a~~~~~~~~~~~~~~ 665 (834)
+ +|+. .|+. ..++.+. +. ....++.+.+.++++++| .+ |+ |+++.+.+.+.+++++
T Consensus 131 ~~~~ig~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~ 203 (263)
T 1mqi_A 131 TEIAYGTLDSGST-KEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQR 203 (263)
T ss_dssp SSSEEECBSSSHH-HHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTS
T ss_pred cCeeEEEEeccHH-HHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhc
Confidence 5 5644 4554 4444321 11 112466788999999999 77 78 8999998888888877
Q ss_pred CCccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcC-CCCCC
Q 003275 666 TNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLT-YNECS 723 (834)
Q Consensus 666 ~~~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~-~~~c~ 723 (834)
..|++.+++..+...+++++++|+++|++.||++|.+|.++|.+++|.+||+. ...|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 204 KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred CCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 55788888888888889999999999999999999999999999999999998 77886
No 44
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=8.4e-23 Score=211.89 Aligned_cols=233 Identities=24% Similarity=0.420 Sum_probs=180.9
Q ss_pred CCCceEEEecCccccccceeccCC----CCceeeeeHHHHHHHHHhCCCCcCEEEEe---cCCCCCCCChHHHHHHHHhC
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKS----PPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNGKRNPIYNDIVQQVALN 444 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~----~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~~~n~s~~~~~~~l~~g 444 (834)
+|++|||++.. ++||.+.+.+ .+++.|+++||++++++++|++++++.++ +|....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~---~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVL---EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECC---BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEec---cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 47899999954 4777776541 17899999999999999999884444432 22222356899999999999
Q ss_pred cccEEeeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCC
Q 003275 445 KFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEF 524 (834)
Q Consensus 445 ~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 524 (834)
++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998654
Q ss_pred CCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCe
Q 003275 525 RGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPI 604 (834)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v 604 (834)
++++++||. . ++
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~-~--~v 127 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLS-K--QT 127 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHH-T--CS
T ss_pred -----------------------------------------------------------------Cccchhhhh-h--hh
Confidence 578899997 2 35
Q ss_pred eEee----CchhhHHHHhhhcccc------------------cceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHH
Q 003275 605 GVQD----GSFAWNYLVDELKIAE------------------SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELF 662 (834)
Q Consensus 605 ~~~~----~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~ 662 (834)
|+.. ++....++.+. +... .++..+.+.++++++|.+ |++ +++.+...+.++
T Consensus 128 ~v~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~ 201 (265)
T 2v3u_A 128 DIPYGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYV 201 (265)
T ss_dssp SSCEECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHH
T ss_pred cEEEEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHH
Confidence 5444 44445555432 1111 123467899999999999 899 888888888887
Q ss_pred hhc-CCccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhhhccccHHHHHHhhcC-CCCCC
Q 003275 663 MSK-TNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLT-YNECS 723 (834)
Q Consensus 663 ~~~-~~~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~-~~~c~ 723 (834)
+++ ..|++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+. ...|+
T Consensus 202 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 202 AINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred HhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 764 24689999888888889999999999999999999999999999999999998 66775
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.89 E-value=1.1e-22 Score=207.22 Aligned_cols=220 Identities=17% Similarity=0.321 Sum_probs=191.2
Q ss_pred CceEEEecCccccccceec-cCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 374 MPLRIAVPNRVSYNEFVAK-DKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~-~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
++|+||+. ..|+||.+. +. ++.+.|+++|+++.+++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAY---------IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEE---------CGGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEEC--CCCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEc---------CHHHHHHHHhCCCCCEEEEc
Confidence 68999994 458999988 53 7889999999999999999988555544 39999999999999999999
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
++.+++|.+.++||.||+....++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
++++++||. |++||+..|+..
T Consensus 101 ---------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 ---------------------------------------------------------KISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp ---------------------------------------------------------SCCSGGGGT--TCEEEEETTSTH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCCHH
Confidence 488999997 889999999987
Q ss_pred hHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC------c-cEEEeCCcc-cccceEE
Q 003275 613 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN------C-EFRTVGQEF-TKSGWGF 684 (834)
Q Consensus 613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~------~-~l~~v~~~~-~~~~~~~ 684 (834)
..++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. . ++.+++..+ ...++++
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 195 (237)
T 3kzg_A 122 ARQVLSEN--RNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSI 195 (237)
T ss_dssp HHHHHHTC--SSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCC
T ss_pred HHHHHHhC--CCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEE
Confidence 77775433 33678889999999999999 999999999999999888733 2 788888777 7788999
Q ss_pred EEcCCCc-chHHHHHHHHhhhccccHHHHHHhhcCCC
Q 003275 685 AFQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYN 720 (834)
Q Consensus 685 ~~~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~~ 720 (834)
+++|++| +.+.+|++|.++.++|.+++|.+||+...
T Consensus 196 ~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 196 MANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGH 232 (237)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC---
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCcc
Confidence 9999977 99999999999999999999999999843
No 46
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=1.1e-22 Score=206.53 Aligned_cols=220 Identities=17% Similarity=0.314 Sum_probs=187.1
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+ .+.|+||.+.+. ++++.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 4 a~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGT--EGAYPPYNFIND-AGEVDGFERELGDELCKRAGLT--CEWVK-------NDWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHHHTCC--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEE--CCCCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCCCEEEeC
Confidence 47899999 456899998764 6899999999999999999988 45544 359999999999999999999
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
++.+++|.+.++||.||+....++++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999987543
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
++||. | +||+..|+..
T Consensus 102 -------------------------------------------------------------~~dL~--g-~igv~~g~~~ 117 (232)
T 3i6v_A 102 -------------------------------------------------------------GADLS--G-IVAAQTATIQ 117 (232)
T ss_dssp -------------------------------------------------------------TCCTT--S-EEEEETTSHH
T ss_pred -------------------------------------------------------------hHHhC--C-CEEEecCchH
Confidence 24453 7 8999999998
Q ss_pred hHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCC-cccccceEEEEcCCCc
Q 003275 613 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQ-EFTKSGWGFAFQRDSP 691 (834)
Q Consensus 613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~-~~~~~~~~~~~~k~sp 691 (834)
..++.+. ..+++.+++.++++++|.+ |++|+++.+...+.+++++...++.+++. .+...+++++++|++|
T Consensus 118 ~~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 189 (232)
T 3i6v_A 118 AGYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDG 189 (232)
T ss_dssp HHHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCH
T ss_pred HHHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCH
Confidence 8888653 3678889999999999999 99999999999999988874467777764 3556789999999988
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhcCCCCCCCCC
Q 003275 692 -LAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDL 726 (834)
Q Consensus 692 -l~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~~~~ 726 (834)
+.+.||++|.++.++|.+++|.+||++...|....
T Consensus 190 ~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 190 ELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred HHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999999999999999999999999966655443
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.88 E-value=4.2e-22 Score=204.59 Aligned_cols=223 Identities=20% Similarity=0.419 Sum_probs=194.2
Q ss_pred CCCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 371 NNGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 371 ~~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
...++|+||+. +.|+||.+.+ +++..|+++|+++.+++++|++++++.. +|.+++.++.+|++|+++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPM---------DFAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeC--CCCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEec---------CHHHHHHHHHCCCCCEEE
Confidence 35678999994 5688988873 6899999999999999999988655554 399999999999999999
Q ss_pred eeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCc
Q 003275 451 GDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 530 (834)
Q Consensus 451 ~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 530 (834)
+++..+++|.+.++||.||.....++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 99999999999999999999999999998765
Q ss_pred chhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCc
Q 003275 531 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 610 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 610 (834)
+.+++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 3688999996 8899999999
Q ss_pred hhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcccccceEEEEcCC
Q 003275 611 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRD 689 (834)
Q Consensus 611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~~~~~~~~~~~k~ 689 (834)
....++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++++.. .++.+++..+...+++++++|+
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKG 213 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETT
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCC
Confidence 9888886543 44678889999999999999 999999999999999887733 2588888888888999999999
Q ss_pred CcchHHHHHHHHhhhccccHHHHHHhhcCCC
Q 003275 690 SPLAIDLSTAILQLSENGDLQKIHNKWLTYN 720 (834)
Q Consensus 690 spl~~~~~~~i~~l~e~G~~~~i~~kw~~~~ 720 (834)
+|+.+.||++|.++.++|.+++|.+||++..
T Consensus 214 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 214 SPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp CTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999999844
No 48
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.88 E-value=3.4e-22 Score=207.78 Aligned_cols=227 Identities=18% Similarity=0.330 Sum_probs=196.1
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+ ...|+||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 20 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGF--DATFVPMGYEEK-DGSYIGFDIDLANAVFKLYGID--VEWQA-------IDWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEE--CTEETTTEEECT-TSCEECHHHHHHHHHHHTTTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEE--CCCCCCceEECC-CCCEEEehHHHHHHHHHHhCCc--EEEEE-------CCHHHHHHHHHCCCCCEEEec
Confidence 47899999 456899998774 7899999999999999999987 55554 249999999999999999988
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
+..+++|.+.++||.||+....++++++..
T Consensus 88 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 117 (268)
T 3hv1_A 88 YSVTDERKQSADFTEPYMVNEQVLVTKKSS-------------------------------------------------- 117 (268)
T ss_dssp CBCCHHHHTTCEECCCCEEECEEEEEEGGG--------------------------------------------------
T ss_pred CccCHHHHhcCcCcHHHeeCceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998655
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
.+++++||. |++||+..|+..
T Consensus 118 ---------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~ 138 (268)
T 3hv1_A 118 ---------------------------------------------------------GIDSVAGMA--GKTLGAQAGSSG 138 (268)
T ss_dssp ---------------------------------------------------------CCCSSGGGT--TCCEEEETTCHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEEeCCch
Confidence 678899996 899999999988
Q ss_pred hHHHHhhhc-----ccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC--ccEEEeCCcccccceEEE
Q 003275 613 WNYLVDELK-----IAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN--CEFRTVGQEFTKSGWGFA 685 (834)
Q Consensus 613 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~~l~~v~~~~~~~~~~~~ 685 (834)
..++..... .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. +++.+++..+...+++++
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 214 (268)
T 3hv1_A 139 YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVG 214 (268)
T ss_dssp HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCE
T ss_pred HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEE
Confidence 887754221 233678889999999999999 999999999999999887744 578888887888889999
Q ss_pred EcCCCc-chHHHHHHHHhhhccccHHHHHHhhcCCCCCCC
Q 003275 686 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYNECSM 724 (834)
Q Consensus 686 ~~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~~ 724 (834)
++|++| +.+.||++|.++.++|.+++|.+||+....++.
T Consensus 215 ~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~~ 254 (268)
T 3hv1_A 215 ARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVATD 254 (268)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCCCT
T ss_pred EcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCCCC
Confidence 999998 999999999999999999999999998544443
No 49
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.88 E-value=4.1e-22 Score=203.61 Aligned_cols=222 Identities=18% Similarity=0.286 Sum_probs=193.8
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++|+||+ .+.++||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 10 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGT--NATYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVRE-------FSFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEE--CSCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEe--CCCCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEE-------cCHHHHHHHHhCCCcCEEEec
Confidence 46899999 456899998765 7899999999999999999977 55554 359999999999999999988
Q ss_pred eeeecCceeeEEecceee--eceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCc
Q 003275 453 ITIVTNRTKLVDFTQPYM--ESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 530 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~--~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 530 (834)
+..+++|.+.++| .||+ ....++++++..
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------ 108 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGE------------------------------------------------ 108 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESC------------------------------------------------
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCC------------------------------------------------
Confidence 9999999999999 9999 888899888664
Q ss_pred chhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCc
Q 003275 531 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 610 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 610 (834)
.+++++||. |++||+..|+
T Consensus 109 -----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~ 127 (242)
T 3del_B 109 -----------------------------------------------------------NKHPLPLTQ--YRSVAVQTGT 127 (242)
T ss_dssp -----------------------------------------------------------CSCCCCGGG--SSCEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEEcCc
Confidence 678889996 8899999999
Q ss_pred hhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccc----eEEEE
Q 003275 611 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSG----WGFAF 686 (834)
Q Consensus 611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~----~~~~~ 686 (834)
....++.+ .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++ ...+.+++..+...+ +++++
T Consensus 128 ~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 199 (242)
T 3del_B 128 YQEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKD-FPALSTATIDLPEDQWVLGYGIGV 199 (242)
T ss_dssp HHHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGG-CTTEEEEEEECCGGGCEEEEEEEE
T ss_pred HHHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHh-CCCeEEecCccCcccccceEEEEE
Confidence 98888865 345778889999999999999 9999999999999999887 556888877676677 99999
Q ss_pred cCCCc-chHHHHHHHHhhhccccHHHHHHhhcCCCCCCC
Q 003275 687 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYNECSM 724 (834)
Q Consensus 687 ~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~~ 724 (834)
+|++| +.+.||++|.++.++|.+++|.+||+....|+.
T Consensus 200 ~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 200 ASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp ETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred eCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 99988 999999999999999999999999998555543
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=2.8e-22 Score=205.38 Aligned_cols=224 Identities=17% Similarity=0.289 Sum_probs=196.3
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+. +.++||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVK--LKLVP-------TSWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEET-TTEEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEEC--CCcCCeeEECC-CCCCccchHHHHHHHHHHhCCe--EEEEE-------ccHHHHHHHHhCCCcCEEEec
Confidence 468999994 57899988764 7899999999999999999988 44444 249999999999999999888
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
+..+++|.+.+.||.||+....++++++..
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGL-------------------------------------------------- 101 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTT--------------------------------------------------
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCc--------------------------------------------------
Confidence 999999999999999999999999998775
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
...+++++||...+++||+..|+..
T Consensus 102 -------------------------------------------------------~~~i~~~~dL~~~g~~i~v~~g~~~ 126 (245)
T 3k4u_A 102 -------------------------------------------------------EKGVKSYKDLDKPELTLVTKFGVSA 126 (245)
T ss_dssp -------------------------------------------------------TTTCCSGGGGCCSSCEEEEETTSHH
T ss_pred -------------------------------------------------------ccccCCHHHhccCCcEEEEeCCcHH
Confidence 1368899999866889999999998
Q ss_pred hHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcccccceEEEEcCCCc
Q 003275 613 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDSP 691 (834)
Q Consensus 613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~~~~~~~~~~~k~sp 691 (834)
..++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++.+.. ..+..+...+...+++++++|++|
T Consensus 127 ~~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 200 (245)
T 3k4u_A 127 EYAAKRL--FKNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDP 200 (245)
T ss_dssp HHHHHHH--CSSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCH
T ss_pred HHHHHhh--CCcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCH
Confidence 8888653 344678889999999999999 999999999998888876633 468888888888899999999999
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 692 -LAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 692 -l~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
+.+.||++|.++.++|.+++|.+||+..
T Consensus 201 ~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 229 (245)
T 3k4u_A 201 DFLNWLNHFLAQIKHDGSYDELYERWFVD 229 (245)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHhcCc
Confidence 9999999999999999999999999983
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.87 E-value=4.9e-22 Score=202.59 Aligned_cols=221 Identities=15% Similarity=0.241 Sum_probs=190.7
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++|+||+ ...|+||.+.+. ++.+.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 14 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVAT--TGDYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAK--LVVVP-------TSWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEE-------CCTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEE--CCCCCCeeEECC-CCCEEeehHHHHHHHHHHHCCc--eEEEE-------eCHHHHHHHHHCCCcCEEEeC
Confidence 47899999 456899998774 7899999999999999999988 45544 359999999999999999888
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
++.+++|.+.++||.||+....++++++..
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 111 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSE-------------------------------------------------- 111 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGG--------------------------------------------------
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCc--------------------------------------------------
Confidence 999999999999999999999999998765
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
...+++++||...+++||+..|+..
T Consensus 112 -------------------------------------------------------~~~i~~~~dL~~~g~~v~~~~g~~~ 136 (239)
T 3kbr_A 112 -------------------------------------------------------EARFQTLEQIDQPGVTAIVNPGGTN 136 (239)
T ss_dssp -------------------------------------------------------GGGGSSHHHHSSTTCEEEECTTSHH
T ss_pred -------------------------------------------------------ccccCCHHHhcCCCcEEEEcCCCcH
Confidence 1368899999866889999999998
Q ss_pred hHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeC--CcccccceEEEEcCCC
Q 003275 613 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVG--QEFTKSGWGFAFQRDS 690 (834)
Q Consensus 613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~--~~~~~~~~~~~~~k~s 690 (834)
..++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++ ..++.++. ..+...+++++++| .
T Consensus 137 ~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k-~ 208 (239)
T 3kbr_A 137 EKFARAN--LKKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRL-HPELCAVHPQQPFDFAEKAYLLPR-D 208 (239)
T ss_dssp HHHHHHH--CSSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHH-CTTEEECCCC-CCCCEEECCEECS-C
T ss_pred HHHHHHh--CCCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHh-CCCcEEecCCCCccccceEEEEcC-C
Confidence 8888653 345678889999999999999 9999999999999998887 55566664 44667789999999 5
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 691 P-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 691 p-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
+ +.+.+|++|.++.++|.+++|.+||++
T Consensus 209 ~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 209 EAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 5 999999999999999999999999986
No 52
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.87 E-value=2.6e-21 Score=195.25 Aligned_cols=219 Identities=24% Similarity=0.413 Sum_probs=184.5
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||+. ..|+||.+.+. ++...|+++|+++.+++++|+++ ++++ .+|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVC--TISN-------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC---CCEESHHHHHHHHHHHHTTCEE--EEEE-------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEc--CCCCCeeEECC-CCCcccchHHHHHHHHHHhCCeE--EEEe-------CCHHHHHHHHhCCCCCEEEecC
Confidence 57999993 45899998764 78999999999999999999884 4444 3599999999999999998889
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcchh
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLV 533 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 533 (834)
..+++|.+.+.||.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998776
Q ss_pred hHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchhh
Q 003275 534 TIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAW 613 (834)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~ 613 (834)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 2237888886 8899999999988
Q ss_pred HHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCc-cEEEeCCcccc-----cceEEEEc
Q 003275 614 NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEFTK-----SGWGFAFQ 687 (834)
Q Consensus 614 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~l~~v~~~~~~-----~~~~~~~~ 687 (834)
.++.+..... .+++.+.+.++++++|.+ |++|+++.+...+.+++++... ++.+++..+.. .+++++++
T Consensus 122 ~~l~~~~~~~-~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (227)
T 3tql_A 122 SYLQDSFGNS-ITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVK 196 (227)
T ss_dssp HHHHHHHGGG-SEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEE
T ss_pred HHHHHhcccc-ceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEc
Confidence 8886543211 677889999999999999 9999999999999988877332 37776544433 34589999
Q ss_pred CCCc-chHHHHHHHHhhhccccHHHHHHhhc
Q 003275 688 RDSP-LAIDLSTAILQLSENGDLQKIHNKWL 717 (834)
Q Consensus 688 k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~ 717 (834)
|++| +.+.||++|.++.++|.+++|.+||+
T Consensus 197 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 197 KGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 9998 99999999999999999999999996
No 53
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.87 E-value=4.4e-21 Score=194.48 Aligned_cols=220 Identities=19% Similarity=0.338 Sum_probs=187.8
Q ss_pred CCceEEEecCccccccceec--cCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 373 GMPLRIAVPNRVSYNEFVAK--DKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~--~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
.++|+||+. +++||.+. +. ++.+.|+++|+++.+++++|++ ++++.. ++|.+++.+|.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEE
Confidence 468999994 47888887 43 6899999999999999999988 555542 3699999999999999999
Q ss_pred eeeeeecCce--eeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCC
Q 003275 451 GDITIVTNRT--KLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPP 528 (834)
Q Consensus 451 ~~~~i~~~r~--~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~ 528 (834)
+++..+++|. +.++||.||+....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8889999998 99999999999999999987761
Q ss_pred CcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEee
Q 003275 529 SQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQD 608 (834)
Q Consensus 529 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~ 608 (834)
..+++++||. |+++|+..
T Consensus 106 ------------------------------------------------------------~~i~~~~dL~--g~~v~~~~ 123 (233)
T 1ii5_A 106 ------------------------------------------------------------PLFRSVGDLK--NKEVAVVR 123 (233)
T ss_dssp ------------------------------------------------------------TTCSSGGGGT--TCEEEEET
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCeEEEEC
Confidence 2688999996 88999999
Q ss_pred CchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCc-cEEEeCCcccccceEEEEc
Q 003275 609 GSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEFTKSGWGFAFQ 687 (834)
Q Consensus 609 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~l~~v~~~~~~~~~~~~~~ 687 (834)
|+....++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++... ++.+++..+...+++++++
T Consensus 124 g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (233)
T 1ii5_A 124 DTTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLK 195 (233)
T ss_dssp TSHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEE
T ss_pred CccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEc
Confidence 99888888643 3567788999999999999 9999999999999888876332 6888887777788999999
Q ss_pred CCCcchHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 688 RDSPLAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 688 k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
|++|+.+.+|++|..+.++|.+++|.+||+..
T Consensus 196 k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 196 ENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp TTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999999973
No 54
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.86 E-value=6.2e-21 Score=197.11 Aligned_cols=224 Identities=19% Similarity=0.274 Sum_probs=191.9
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
..++|+||+ .+.|+||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|++++
T Consensus 27 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAV--SPASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCK--LNITE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEE--CCCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEE--CCCCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCCCEEEE
Confidence 357899999 456899988774 7899999999999999999988 55554 35999999999999999999
Q ss_pred eeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 452 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 452 ~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
+++.+++|.+.++||.||+....+++++++.
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 125 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANH------------------------------------------------- 125 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTS-------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCC-------------------------------------------------
Confidence 9999999999999999999999999998765
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
...|++++||. |++||+..|+.
T Consensus 126 --------------------------------------------------------~~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 126 --------------------------------------------------------KITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp --------------------------------------------------------CCCCCSGGGGG--GSCEEEETTST
T ss_pred --------------------------------------------------------CCCCCCHHHhC--CCEEEEeCCcH
Confidence 13788999997 88999999998
Q ss_pred hhHHHHhhhcc---cc-cceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccceEEEEc
Q 003275 612 AWNYLVDELKI---AE-SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQ 687 (834)
Q Consensus 612 ~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~ 687 (834)
...++.+.... +. .+++.+.+.++++++|.+ |++|+++.+.+.+.+++++...++..........+++++++
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFK 223 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEe
Confidence 88888653321 11 577889999999999999 99999999998888887764567777666666788999999
Q ss_pred CCCcchHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 688 RDSPLAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 688 k~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
|+++|.+.||++|.+ ..++.++++.++|...
T Consensus 224 k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 224 KGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp TTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 999999999999999 8889999999999873
No 55
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.86 E-value=7.4e-21 Score=192.99 Aligned_cols=220 Identities=16% Similarity=0.267 Sum_probs=191.8
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
..++|+||+ ...++||.+.+. ++...|+++|+++.+++++|++++++.. +|.+++.++.+|++|++ .
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGG--DRDYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEE--ETEETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEe--cCCCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 357899999 456899998864 6889999999999999999988666543 49999999999999995 6
Q ss_pred eeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 452 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 452 ~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
++..+++|.+.+.||.||.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 7889999999999999999999999998776
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
+.+++++||. |++||+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 2488999996 88999999998
Q ss_pred hhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcccccceEEEEcCCC
Q 003275 612 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDS 690 (834)
Q Consensus 612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~~~~~~~~~~~k~s 690 (834)
...++.+.. ...+++.+++.++++++|.+ |++|+++.+...+.+++++.. .++.++...+...+++++++|++
T Consensus 128 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (234)
T 3h7m_A 128 MHEYLAERG--YGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGD 201 (234)
T ss_dssp HHHHHHTTT--CGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHhcC--CCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCC
Confidence 888886432 33678889999999999999 999999999998888887633 36888877777888999999999
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 691 P-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 691 p-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
| +.+.||++|.++.++|.+++|.+||++
T Consensus 202 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 202 AELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 8 999999999999999999999999997
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.86 E-value=4e-21 Score=196.63 Aligned_cols=226 Identities=14% Similarity=0.180 Sum_probs=188.7
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCC-CCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLP-YPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~-~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
.++|+||+. ..|+||.+. . ++.+.|+++|+++.+++++| ++ +++++ .+|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~--~~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATN--GSPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYD--VKFEK-------TEWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEEC--CCSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEE--EEEEE-------CCHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeC--CCcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCce--EEEEe-------CCHHHHHHHHhCCCcCEEec
Confidence 468999994 468899884 3 68999999999999999999 88 45544 35999999999999999998
Q ss_pred eeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 452 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 452 ~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
+++.+++|.+.++||.||+....++++++..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 104 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------- 104 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTC-------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998744
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
.++++++||. |++||+..|+.
T Consensus 105 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 125 (246)
T 4eq9_A 105 ---------------------------------------------------------SSIKSLDDIG--GKSTEVVQATT 125 (246)
T ss_dssp ---------------------------------------------------------CSCSSGGGCT--TCEEEECTTCH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcc
Confidence 3688999997 88999999998
Q ss_pred hhHHHHh---hhcccccceE-ecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcccccc-eEEE
Q 003275 612 AWNYLVD---ELKIAESRLV-KLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSG-WGFA 685 (834)
Q Consensus 612 ~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~~~~~-~~~~ 685 (834)
...++.. ........+. ...+.++++++|.+ |++|+++.+...+.+++++.. .++.++.......+ ++++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (246)
T 4eq9_A 126 SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPL 201 (246)
T ss_dssp HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCE
T ss_pred HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEE
Confidence 8888765 2221122333 23588999999999 999999999999998887633 25888876666555 8899
Q ss_pred EcCCCc-chHHHHHHHHhhhccccHHHHHHhhcCCCCCC
Q 003275 686 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYNECS 723 (834)
Q Consensus 686 ~~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~~~c~ 723 (834)
++|++| +.+.||++|.++.++|.+++|.+||++...++
T Consensus 202 ~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~p 240 (246)
T 4eq9_A 202 LAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTYLP 240 (246)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCCCC
T ss_pred EcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCCCC
Confidence 999998 99999999999999999999999999854443
No 57
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.85 E-value=5.9e-21 Score=194.50 Aligned_cols=223 Identities=18% Similarity=0.335 Sum_probs=186.2
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++|+||+ .+.|+||.+.+. ++++.|+++|+++++++++|++ ++++. .+|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVK--CTWVA-------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEE--CCCcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCe--EEEEe-------CCHHHHHHHHhCCCCCEEEEC
Confidence 46899999 456889988764 6889999999999999999987 44444 359999999999999999988
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
++.+++|.+.++||.||+....++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
+...+++||. |++||+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 1125889996 889999999988
Q ss_pred hHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHH-HhhcCC-ccEEEeCCcccc-----cceEEE
Q 003275 613 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL-FMSKTN-CEFRTVGQEFTK-----SGWGFA 685 (834)
Q Consensus 613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~-~~~~~~-~~l~~v~~~~~~-----~~~~~~ 685 (834)
..++.+....+..+++.+.+.++++++|.+ |++|+++.+...+.+ ++.+.. .++.+++..+.. .+++++
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVG 198 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCE
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEE
Confidence 888865442234567888999999999999 999999999887754 454422 358777765543 268999
Q ss_pred EcCCCc-chHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 686 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 686 ~~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
++|++| +.+.+|++|.++.++|.+++|.+||+..
T Consensus 199 ~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 199 LRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred EeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 999998 9999999999999999999999999974
No 58
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.85 E-value=9.9e-21 Score=196.52 Aligned_cols=220 Identities=17% Similarity=0.223 Sum_probs=188.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+ ...|+||.+.+. ++++.|+++|+++.+++++|+++ +++++ .+|.+++.+|.+|++|++. +
T Consensus 31 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~--~~~~~------~~~~~~~~~l~~G~~D~~~-~ 98 (267)
T 3mpk_A 31 HPVVKVAV--LNLFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDF--EIIGV------DTVEELIAKLRSGEADMAG-A 98 (267)
T ss_dssp CSEEEEEE--ETEETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEE--EEEEE------SSHHHHHHHHHHTSCSEEE-E
T ss_pred CCcEEEEe--CCCCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeE--EEEec------CCHHHHHHHHHCCCccEEe-c
Confidence 47899999 455899998764 68899999999999999999884 44432 4699999999999999976 7
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcch
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 532 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 532 (834)
++.+++|.+.+.||.||.....++++++..
T Consensus 99 ~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~-------------------------------------------------- 128 (267)
T 3mpk_A 99 LFVNSARESFLSFSRPYVRNGMVIVTRQDP-------------------------------------------------- 128 (267)
T ss_dssp EECCGGGTTTEEECSCSEEECEEEEEESST--------------------------------------------------
T ss_pred ccCChhhhcceEechhhccCceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998775
Q ss_pred hhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchh
Q 003275 533 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 612 (834)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~ 612 (834)
+.+++++||. |++||+..|+..
T Consensus 129 --------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~~ 150 (267)
T 3mpk_A 129 --------------------------------------------------------DAPVDADHLD--GRTVALVRNSAA 150 (267)
T ss_dssp --------------------------------------------------------TSCSSGGGCT--TCEEEEETTCTH
T ss_pred --------------------------------------------------------CCCCCHHHHC--CCEEEEeCCchh
Confidence 3678999997 899999999998
Q ss_pred hHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcc-cccceEEEEcCCC
Q 003275 613 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEF-TKSGWGFAFQRDS 690 (834)
Q Consensus 613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~-~~~~~~~~~~k~s 690 (834)
..++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++.. .++.+++... ...+++++++|++
T Consensus 151 ~~~l~~~--~~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~ 224 (267)
T 3mpk_A 151 IPLLQRR--YPQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQ 224 (267)
T ss_dssp HHHHHHH--CTTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTC
T ss_pred HHHHHHh--CCCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCC
Confidence 8888653 345778889999999999999 999999999999988887622 3577776533 3678999999999
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 691 P-LAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 691 p-l~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
| +.+.||++|..+.++| +++|.+||+..
T Consensus 225 ~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 225 TELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 8 9999999999999997 99999999984
No 59
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.85 E-value=1.4e-20 Score=189.63 Aligned_cols=218 Identities=23% Similarity=0.422 Sum_probs=188.2
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|+||+. +.++||.+.++ +++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~--g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQG--DLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEET--TEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEecC--CcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 57999994 56889888763 799999999999999999988555543 499999999999999999888
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcchh
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLV 533 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 533 (834)
..+++|.+.++|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999998765
Q ss_pred hHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchhh
Q 003275 534 TIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAW 613 (834)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~ 613 (834)
+.+++++||. |++|++..|+...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 2578889996 8899999999888
Q ss_pred HHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcccccceEEEEcCCCc-
Q 003275 614 NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDSP- 691 (834)
Q Consensus 614 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~~~~~~~~~~~k~sp- 691 (834)
.++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. .++.+++..+...+++++++|++|
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~ 195 (226)
T 1wdn_A 122 DYAKANI--KTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDE 195 (226)
T ss_dssp HHHHHHC--CCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHH
T ss_pred HHHHHhC--CCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHH
Confidence 8886532 34567788999999999999 999999999998888877733 468887766677789999999986
Q ss_pred chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 692 LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 692 l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
+.+.+|++|.++.++|.+++|.+||+.
T Consensus 196 l~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 196 LRDKVNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 999999999999999999999999987
No 60
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.84 E-value=1.2e-20 Score=201.87 Aligned_cols=261 Identities=12% Similarity=0.062 Sum_probs=198.4
Q ss_pred CCCcEEEECCCChhhHHHHHHh-hccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHV-VNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~-~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
+++|.+||||.+|+.+.+++.. .+...+|+++.+++++ .. ..|++||+.+++..|+.++++++...|+|++++|+.
T Consensus 56 ~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~ 132 (327)
T 3ckm_A 56 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMP 132 (327)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEec
Confidence 4689999999999988887665 4556677776544433 22 348999999999999999999998899999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
|++||+...+.|.+++++.|++|+..+.++.. +....+.+++..++|+|++.+.+.++..+.+++++.|+.. .
T Consensus 133 ~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~----~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~ 205 (327)
T 3ckm_A 133 QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP----ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---A 205 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSCCEEEEESST----THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---E
T ss_pred CChHHHHHHHHHHHHHHHCCCeEEEEEECCCC----chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---C
Confidence 99999999999999999999999988888643 2345677888999999999999999999999999988654 4
Q ss_pred EEEeCCCcccCCCCCCCChhhHhhcccceEEEe-c--CCCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHHH
Q 003275 161 WIATDWLPSVLDSTEPVDIDTMNLLQGVVALRH-H--TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAH 237 (834)
Q Consensus 161 wi~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~--~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~ 237 (834)
++.++++....... .......++|++.... + .++.+..++|.++|++.+ .+..+.+.+|||+.++++
T Consensus 206 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~-------~~~~~~AlgyDA~~l~~~ 275 (327)
T 3ckm_A 206 IYASSRASASATNT---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY-------QLMRLYAMGADAWLLINQ 275 (327)
T ss_dssp EEECGGGCCHHHHT---CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH-------HHHHHHHHHHHHHHHHHT
T ss_pred EEeeeccccccchh---cchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhc-------CCCchHHHHHHHHHHHHH
Confidence 55555443211100 1122345678776653 2 356778899998888766 133467789999988765
Q ss_pred HHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccc
Q 003275 238 ALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTG 317 (834)
Q Consensus 238 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~~ 317 (834)
+.+.. .+....|.|+||.++||++|+ ....+.++++++++
T Consensus 276 l~~~~---------------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~ 315 (327)
T 3ckm_A 276 FNELR---------------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGA 315 (327)
T ss_dssp HHHHH---------------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTE
T ss_pred HHHhc---------------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCE
Confidence 54331 122246999999999999997 45778899999888
Q ss_pred eEEEE
Q 003275 318 SRRIG 322 (834)
Q Consensus 318 ~~~vG 322 (834)
++.|.
T Consensus 316 ~vpv~ 320 (327)
T 3ckm_A 316 IVPVV 320 (327)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 87765
No 61
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.84 E-value=1.7e-20 Score=198.42 Aligned_cols=259 Identities=10% Similarity=0.068 Sum_probs=198.8
Q ss_pred CCCcEEEECCCChhhHHHHHHhh-ccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVV-NELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~-~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
+++|.+||||.+|..+.++++++ ...+||+|++++++. .......|+||+. +..++.++++++...|.|++++|+.
T Consensus 54 ~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~--~~~~~~~~a~~a~~~g~k~vail~~ 130 (325)
T 2h4a_A 54 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLS--PEDEAESAANKMWNDGVRNPLVAMP 130 (325)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCC--HHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECC--HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 47899999999999999999999 789999999876542 3223345666755 4457899999998889999999999
Q ss_pred cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 81 DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
+++||+...+.|++++++.|++|+..+.++.. .|+..+|.++ ..++|+|++.++..++..+.++++..|... -
T Consensus 131 ~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~---~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~---p 203 (325)
T 2h4a_A 131 QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNL---A 203 (325)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTC---E
T ss_pred CCcHHHHHHHHHHHHHHHcCCCcceeEecCCH---HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCC---C
Confidence 99999999999999999999999988888743 6999999999 578999999999999988888887765433 3
Q ss_pred EEEeCCCcc-cCCCCCCCChhhHhhcccceEEE-ecC--CCChhHHHHHHHHHhhhcCCCCCCCccchhHHHhhHHHHHH
Q 003275 161 WIATDWLPS-VLDSTEPVDIDTMNLLQGVVALR-HHT--PDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVA 236 (834)
Q Consensus 161 wi~~~~~~~-~~~~~~~~~~~~~~~~~Gv~~~~-~~~--~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la 236 (834)
.+.++++.. .... .+.....++|++... ++. ++.+..++|.++|+..+ .+....+.+|||+.+++
T Consensus 204 l~~~~~~~~~s~~~----~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~-------~~~rl~AlgyDA~~l~~ 272 (325)
T 2h4a_A 204 IYASSRASASATNT----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY-------QLMRLYAMGADAWLLIN 272 (325)
T ss_dssp EEECGGGCCHHHHT----CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH-------HHHHHHHHHHHHHHHHH
T ss_pred EEEeccccccCCCC----CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc-------chHHHHHHHHHHHHHHH
Confidence 455555441 1111 134456789998765 443 45667888888876543 25666789999999866
Q ss_pred HHHHHHHhcCCCccccCCCCCCCCCCCCccCCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeecc
Q 003275 237 HALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGT 316 (834)
Q Consensus 237 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~i~Fd~~g~~~~~~~~I~~~~~~ 316 (834)
++ .++. .+....|.|+||.++||++|+. .....+.+++++
T Consensus 273 ~l-~~l~--------------------------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G 312 (325)
T 2h4a_A 273 QF-NELR--------------------------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDG 312 (325)
T ss_dssp TH-HHHH--------------------------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETT
T ss_pred HH-HHHh--------------------------------------hCCCCeeccCceeEEECCCCeE-EEeechhhccCC
Confidence 64 2321 1223579999999999999974 677899999887
Q ss_pred ceEEE
Q 003275 317 GSRRI 321 (834)
Q Consensus 317 ~~~~v 321 (834)
+++.|
T Consensus 313 ~~~~~ 317 (325)
T 2h4a_A 313 AIVPV 317 (325)
T ss_dssp EEEEC
T ss_pred eEEEe
Confidence 76654
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.84 E-value=3.6e-20 Score=187.23 Aligned_cols=217 Identities=19% Similarity=0.383 Sum_probs=185.5
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++|+||+ .+.|+||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|+++++
T Consensus 5 a~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGT--SATYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAE--CSFTN-------QSFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEE--CCCBTTTBEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEe--CCCcCCceEECC-CCCCcceeHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCceEEEec
Confidence 57899999 456889988764 6889999999999999999988 44444 349999999999999999988
Q ss_pred eeeecCceeeEEecceeeec-eEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 453 ITIVTNRTKLVDFTQPYMES-GLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~-~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
+..+++|.+.+.||.||... ..++++++..
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 103 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA------------------------------------------------- 103 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS-------------------------------------------------
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC-------------------------------------------------
Confidence 88999999999999999999 8888887542
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
+++++||. |++||+..|+.
T Consensus 104 -----------------------------------------------------------~~~~~dL~--g~~v~~~~g~~ 122 (229)
T 2y7i_A 104 -----------------------------------------------------------YHTFADLK--GKKVGLENGTT 122 (229)
T ss_dssp -----------------------------------------------------------CCSTGGGT--TCEEEEETTSH
T ss_pred -----------------------------------------------------------CCCHHHHC--CCEEEEecCCc
Confidence 56788886 88999999998
Q ss_pred hhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccc-----cceEEEE
Q 003275 612 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTK-----SGWGFAF 686 (834)
Q Consensus 612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~-----~~~~~~~ 686 (834)
...++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++ ..++.++...+.. .++++++
T Consensus 123 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (229)
T 2y7i_A 123 HQRYLQDKQ--QAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKN-NPDYAIMDERASDPDYYGKGLGIAV 195 (229)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTT-CTTEEECSCCBCCTTTSCCCBCCEE
T ss_pred HHHHHHHhC--CCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHh-CCCeEEeccccccccccccceEEEE
Confidence 888886532 34677888999999999999 9999999999999998887 4478888765432 3789999
Q ss_pred cCCCc-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 687 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 687 ~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
+|++| +.+.+|++|.++.++|.+++|.+||++
T Consensus 196 ~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 196 RKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred eCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99988 999999999999999999999999985
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.84 E-value=1e-20 Score=196.84 Aligned_cols=221 Identities=15% Similarity=0.213 Sum_probs=184.2
Q ss_pred CCceEEEecCccccccceeccCCC---CceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEE
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSP---PGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 449 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~---~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~ 449 (834)
.++|+||+ .+.|+||.+.+. + +.+.|+++|+++++++++|+++ ++++ .+|.+++.+|.+|++|++
T Consensus 20 ~~~l~v~~--~~~~pP~~~~~~-~~~~g~~~G~~~dl~~~i~~~~g~~v--~~~~-------~~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 20 KGKIVVAT--SGTLYPTSYHDT-DSGSDKLTGYEVEVVREAAKRLGLKV--EFKE-------MGIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HTEEEEEE--CSCBTTTBEEET-TTTCCEEECHHHHHHHHHHHHTTCEE--EEEE-------CCSTTHHHHHHHTSSSEE
T ss_pred CCeEEEEE--CCCCCCeeEeCC-CCCCCCceeeHHHHHHHHHHHcCCeE--EEEE-------CCHHHHHHHHHCCCcCEE
Confidence 47899999 357889988764 4 8899999999999999999884 4444 249999999999999999
Q ss_pred eeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCC
Q 003275 450 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 529 (834)
Q Consensus 450 ~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~ 529 (834)
+++++.+++|.+.++||.||.....++++++...
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~---------------------------------------------- 121 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL---------------------------------------------- 121 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG----------------------------------------------
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCC----------------------------------------------
Confidence 9888899999999999999999999999987651
Q ss_pred cchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeC
Q 003275 530 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 609 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 609 (834)
..+++++||. |++||+..|
T Consensus 122 -----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g 140 (271)
T 2iee_A 122 -----------------------------------------------------------SGIKTLKDLK--GKKAAGAAT 140 (271)
T ss_dssp -----------------------------------------------------------GGCSSGGGGT--TCEEESCTT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEeCC
Confidence 2678999996 899999999
Q ss_pred chhhHHHHhhhcccccceEecCCHHHH--HHHHhcCCCCCceEEEEechhhHHHHhh-cC-CccEEEe-CCcccccceEE
Q 003275 610 SFAWNYLVDELKIAESRLVKLKNMEEY--SIALARGPKGGGVAAIVDELPYIELFMS-KT-NCEFRTV-GQEFTKSGWGF 684 (834)
Q Consensus 610 s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~g~~~a~~~~~~~~~~~~~-~~-~~~l~~v-~~~~~~~~~~~ 684 (834)
+....++.+ .+ .+++.+.+.++. +++|.+ |++| ++.+.....+++. +. ..++.++ +..+...++++
T Consensus 141 ~~~~~~l~~-~~---~~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (271)
T 2iee_A 141 TVYMEVARK-YG---AKEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQAL 211 (271)
T ss_dssp SHHHHHHHH-TT---CEEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECC
T ss_pred ccHHHHHHH-cC---CceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEE
Confidence 988888853 33 277888888888 999999 9999 6666555555554 31 2367777 66777788999
Q ss_pred EEcCCCc-chHHHHHHHHhhhccccHHHHHHhhcC-CCC
Q 003275 685 AFQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLT-YNE 721 (834)
Q Consensus 685 ~~~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~-~~~ 721 (834)
+++|++| +.+.||++|.++.++|.+++|.+||+. ...
T Consensus 212 ~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~~~~~ 250 (271)
T 2iee_A 212 VMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADV 250 (271)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTCCT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCCcccc
Confidence 9999988 999999999999999999999999998 443
No 64
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.82 E-value=1.6e-19 Score=187.97 Aligned_cols=221 Identities=16% Similarity=0.299 Sum_probs=188.8
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
..++|+||+. +.|+||.+.+ ++.+.|+++|+++.+++++|+++ ++++ ..|.+++.+|.+|++|++++
T Consensus 40 ~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v--~~~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTD--AAFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDY--ELKN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEEC--CCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCE--EEEE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEEC--CCCCCeEEec--CCeEEEEHHHHHHHHHHHhCCce--EEEE-------CCHHHHHHHHhCCCCCEEEe
Confidence 4578999993 5688988874 58899999999999999999884 4444 23999999999999999998
Q ss_pred eeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 452 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 452 ~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
++..+++|.+.+.|+.||.....++++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------- 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------- 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC-------------------------------------------------
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC-------------------------------------------------
Confidence 8888899999999999999999999998765
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
++++++||. |++|++..|+.
T Consensus 138 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 157 (272)
T 2pvu_A 138 ----------------------------------------------------------PVKNALDLK--GKTIGVQNATT 157 (272)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCeEEEEcCch
Confidence 478899996 88999999998
Q ss_pred hhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCc-cEEEeCCcc--cccceEEEEcC
Q 003275 612 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEF--TKSGWGFAFQR 688 (834)
Q Consensus 612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~l~~v~~~~--~~~~~~~~~~k 688 (834)
...++.+..+ ...+++.+.+.++.+++|.+ |++|+++.+...+.+++++... ++.+++... ...+++++++|
T Consensus 158 ~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k 232 (272)
T 2pvu_A 158 GQEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK 232 (272)
T ss_dssp HHHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEET
T ss_pred HHHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeC
Confidence 8888866544 34677888999999999999 9999999999988888776333 488887653 56678999999
Q ss_pred CCcchHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 689 DSPLAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 689 ~spl~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
+..+.+.+|++|..+.++|.+++|.+||+..
T Consensus 233 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 233 NSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp TCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9449999999999999999999999999973
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.82 E-value=8.2e-20 Score=184.34 Aligned_cols=219 Identities=23% Similarity=0.387 Sum_probs=182.1
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|+||+. +++||.+. . ++++.|+++|+++.+++++|++++++.. ++|.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 68999994 47888876 3 6889999999999999999988444433 3699999999999999999888
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcchh
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLV 533 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 533 (834)
..+++|.+.+.|+.||.....++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999877521
Q ss_pred hHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchhh
Q 003275 534 TIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAW 613 (834)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~ 613 (834)
...+++++||. |+++|+..|+...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 13688999996 8899999999888
Q ss_pred HHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC-ccEEEeCCcccccceEEEEcCCCcc
Q 003275 614 NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDSPL 692 (834)
Q Consensus 614 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~l~~v~~~~~~~~~~~~~~k~spl 692 (834)
.++.+ .+ .+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. +++.+++..+...+++++++|++++
T Consensus 125 ~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (228)
T 2pyy_A 125 TYLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPY 196 (228)
T ss_dssp HHHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTT
T ss_pred HHHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHH
Confidence 88854 22 457778999999999999 999999999988888877633 3687777666677899999999999
Q ss_pred hHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 693 AIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 693 ~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
.+.+|++|..+.++|.+++|.+||+.
T Consensus 197 ~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 197 RKPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 99999999999999999999999987
No 66
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.82 E-value=8.4e-20 Score=188.27 Aligned_cols=222 Identities=17% Similarity=0.187 Sum_probs=185.9
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCC-cCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYP-VPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~-~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
.++|+||+. .|+||.+.+. ++.+.|+++|+++.+++++|++ ++++.. .|.+++.++.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 368999993 6889988764 6899999999999999999987 555543 4999999999999999988
Q ss_pred eeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 452 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 452 ~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
++..+++|.+.++||.||.....++++++...
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 89999999999999999999999999987651
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcC-CCCeeEeeCc
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISS-TEPIGVQDGS 610 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~-~~~v~~~~~s 610 (834)
..+++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 257899999754 7899999999
Q ss_pred hhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCc-cEEEeCCccc--ccceEEEEc
Q 003275 611 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEFT--KSGWGFAFQ 687 (834)
Q Consensus 611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~l~~v~~~~~--~~~~~~~~~ 687 (834)
....++.+ .+.+..+++.+.+.++++++|.+ |++|+++.+...+.+++++... .+..+.+... ..+++++++
T Consensus 134 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
T 2q88_A 134 TEEKLALE-AGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFR 208 (257)
T ss_dssp HHHHHHHH-TTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEEC
T ss_pred ccHHHHHh-cCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEc
Confidence 88888854 44555678889999999999999 9999999999999888776332 4555543211 346788999
Q ss_pred CCCc-chHHHHHHHHhhhccccHHHHHHhhc
Q 003275 688 RDSP-LAIDLSTAILQLSENGDLQKIHNKWL 717 (834)
Q Consensus 688 k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~ 717 (834)
|+++ +.+.||++|.++.++|.+++|.+||.
T Consensus 209 k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 209 KGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 9977 99999999999999999999999993
No 67
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.82 E-value=1.7e-19 Score=187.07 Aligned_cols=218 Identities=17% Similarity=0.243 Sum_probs=190.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++|+|++ .+.++||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|+++++
T Consensus 30 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGT--NATYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQ--LEVRE-------FAFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEE--CSCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEE--CCCCCCceEECC-CCCEEEEEHHHHHHHHHHhCCe--EEEEe-------cCHHHHHHHHhCCCccEEeec
Confidence 46899999 456889988764 7899999999999999999977 55554 359999999999999999988
Q ss_pred eeeecCceeeEEecceee--eceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCc
Q 003275 453 ITIVTNRTKLVDFTQPYM--ESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 530 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~--~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 530 (834)
+..+++|.+.++| .||+ ..+.++++++..
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------ 128 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRS------------------------------------------------ 128 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETT------------------------------------------------
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCC------------------------------------------------
Confidence 9999999999999 9999 888999998774
Q ss_pred chhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCc
Q 003275 531 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 610 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 610 (834)
..+++++||. |++||+..|+
T Consensus 129 ----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~ 148 (268)
T 3qax_A 129 ----------------------------------------------------------LETPVLPLTQ--YSSVAVQTGT 148 (268)
T ss_dssp ----------------------------------------------------------SCSCCCCGGG--SSCEEEETTS
T ss_pred ----------------------------------------------------------CCCCCHHHhC--CCEEEEecCc
Confidence 3688899997 8899999999
Q ss_pred hhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccc----eEEEE
Q 003275 611 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSG----WGFAF 686 (834)
Q Consensus 611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~----~~~~~ 686 (834)
....++.. .+..+++.+++.++++++|.+ |++|+++.+.+.+.+++++ ..++.+++..+...+ +++++
T Consensus 149 ~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 220 (268)
T 3qax_A 149 YQEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKD-FPNLVATRLELPPECWVLGCGLGV 220 (268)
T ss_dssp HHHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGG-CTTEEEEEEECCGGGCBCCEEEEE
T ss_pred HHHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHh-CCCcEEecCccCcccccccEEEEE
Confidence 88888864 344677888999999999999 9999999999999998887 556777776676677 99999
Q ss_pred cCCCc-chHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 687 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 687 ~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
+|++| +.+.+|++|.++.++|.+++|.+||+..
T Consensus 221 ~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 221 AKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred eCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 99998 9999999999999999999999999973
No 68
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.81 E-value=4.6e-19 Score=186.04 Aligned_cols=224 Identities=19% Similarity=0.239 Sum_probs=189.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHh----CCC-CcCEEEEecCCCCCCCChHHHHHHHHhCccc
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNL----LPY-PVPHNYIMYGNGKRNPIYNDIVQQVALNKFD 447 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~----l~~-~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D 447 (834)
.++|+||+ ...++||.+.+. ++.+.|+++|+++.+++. +|. .+++++++ ..|.+++.++.+|++|
T Consensus 16 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~-------~~~~~~~~~l~~g~~D 85 (287)
T 2vha_A 16 NGVIVVGH--RESSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIP-------ITSQNRIPLLQNGTFD 85 (287)
T ss_dssp HTEEEEEE--CSEETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEE-------CCTTTHHHHHHTTSCS
T ss_pred CCeEEEEE--cCCCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEE-------CCHHHHHHHHHCCCee
Confidence 46899999 346889988764 688999999999999976 562 13366665 3488999999999999
Q ss_pred EEeeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCC
Q 003275 448 AAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGP 527 (834)
Q Consensus 448 ~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~ 527 (834)
+++++++.+++|.+.++||.||.....++++++..
T Consensus 86 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------- 120 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG--------------------------------------------- 120 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS---------------------------------------------
T ss_pred EEeccccCCcchhhcccccceeeecceEEEEECCC---------------------------------------------
Confidence 99988899999999999999999999999998765
Q ss_pred CCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEe
Q 003275 528 PSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQ 607 (834)
Q Consensus 528 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~ 607 (834)
++++++||. |++||+.
T Consensus 121 --------------------------------------------------------------~i~sl~dL~--g~~v~~~ 136 (287)
T 2vha_A 121 --------------------------------------------------------------DIKDFADLK--GKAVVVT 136 (287)
T ss_dssp --------------------------------------------------------------SCCSGGGGT--TCEEEEE
T ss_pred --------------------------------------------------------------CCCCHHHcC--CCEEEEe
Confidence 578899996 8899999
Q ss_pred eCchhhHHHHhhhc--ccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC--ccEEEeCCcccccceE
Q 003275 608 DGSFAWNYLVDELK--IAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN--CEFRTVGQEFTKSGWG 683 (834)
Q Consensus 608 ~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~~l~~v~~~~~~~~~~ 683 (834)
.|+....++..... ....+++.+.+.++++++|.+ |++|+++.+...+.+++++.. .++.+++..+...+++
T Consensus 137 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (287)
T 2vha_A 137 SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYG 212 (287)
T ss_dssp TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEE
T ss_pred CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceE
Confidence 99988877754321 123567888999999999999 999999999998888877632 3688888777778899
Q ss_pred EEEcCCCc-chHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 684 FAFQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 684 ~~~~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
++++|++| +.+.+|++|.++.++|.+++|.+||+..
T Consensus 213 ~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 213 CMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 99999988 9999999999999999999999999974
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.81 E-value=2.1e-19 Score=189.10 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=188.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC---CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEE
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 449 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l---~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~ 449 (834)
.++|+||+. ..++||.+.+. ++...|+++|+++.+++++ |+++ ++.+ ..|.+++.++.+|++|++
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~--~~~~-------~~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKV--QFVL-------VEAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCE--EEEE-------CCGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceE--EEEE-------cCHHHHHHHHhCCCeeEE
Confidence 367999994 56889988764 6889999999999999999 9884 4444 238999999999999999
Q ss_pred eeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCC
Q 003275 450 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 529 (834)
Q Consensus 450 ~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~ 529 (834)
++++..+.+|.+.++|+.||.....++++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 888888999999999999999999999988654
Q ss_pred cchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeC
Q 003275 530 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 609 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 609 (834)
++++++||. |++||+..|
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 578889996 889999999
Q ss_pred chhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccce-EEEEcC
Q 003275 610 SFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGW-GFAFQR 688 (834)
Q Consensus 610 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~-~~~~~k 688 (834)
+....++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.+++++ ..++.+++..+...++ +++++|
T Consensus 162 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k 234 (292)
T 1xt8_A 162 TTADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKD-HPDFKMGIKELGNKDVIAPAVKK 234 (292)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHH-CTTEEEEEEEEEEEEEECCEEET
T ss_pred CcHHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHh-CCCeEEcccccccCceeEEEEeC
Confidence 98888886532 34567888999999999999 9999999999999988877 4467777766666777 999999
Q ss_pred CCc-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 689 DSP-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 689 ~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
++| +.+.+|++|.++.++|.+++|.+||+.
T Consensus 235 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 235 GDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp TCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 998 999999999999999999999999997
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.81 E-value=2.5e-19 Score=187.50 Aligned_cols=218 Identities=18% Similarity=0.248 Sum_probs=188.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+ .+.|+||.+.+. ++.+.|+++|+++.+++++|++ ++++.+ .|.+++.+|.+|++|++++.
T Consensus 56 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGT--EGTYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEE--CCCCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEEEec
Confidence 36899999 345899988774 6889999999999999999987 555542 39999999999999999988
Q ss_pred eee-ecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcc
Q 003275 453 ITI-VTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 531 (834)
Q Consensus 453 ~~i-~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 531 (834)
+.. +.+|.+.++|+.||......+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 888 899999999999999999999998765
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCch
Q 003275 532 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 611 (834)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~ 611 (834)
+|++++||. |++|++..|+.
T Consensus 155 ----------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADIK--GVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGCT--TSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCch
Confidence 478899995 89999999998
Q ss_pred hhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCc-cEEEeC-Cccc-ccceEEEEcC
Q 003275 612 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVG-QEFT-KSGWGFAFQR 688 (834)
Q Consensus 612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~l~~v~-~~~~-~~~~~~~~~k 688 (834)
...++.+. ..+++.+.+..+++++|.+ |++|+++.+.+.+.+++.+... ++.++. ..+. ..+++++++|
T Consensus 175 ~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k 246 (283)
T 2yln_A 175 YGEKAKAA----GAQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNK 246 (283)
T ss_dssp HHHHHHHT----TCEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEES
T ss_pred HHHHHHHc----CCeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeC
Confidence 88887542 2467788899999999999 9999999999998888776333 488887 6676 6789999999
Q ss_pred CCc-chHHHHHHHHhhhccccHHHHHHhhcCC
Q 003275 689 DSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 719 (834)
Q Consensus 689 ~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~~ 719 (834)
++| +.+.||++|.++.++|.+++|.+||+..
T Consensus 247 ~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 247 GNDEAVAKFSTAINELKADGTLKKLGEQFFGK 278 (283)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 988 9999999999999999999999999973
No 71
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.81 E-value=2.3e-19 Score=186.16 Aligned_cols=220 Identities=22% Similarity=0.326 Sum_probs=188.2
Q ss_pred CCceEEEecCcccccccee---ccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEE
Q 003275 373 GMPLRIAVPNRVSYNEFVA---KDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 449 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~---~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~ 449 (834)
.++|+|++. +.|+||.+ .+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|++
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~~-~g~~~G~~~dl~~~~~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVDG-KNQIVGSDIELAKAIATELGVE--LELSP-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEETT-EEEEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEec--CCCCCceeecccCC-CCcEeeecHHHHHHHHHHHCCc--eEEEE-------cCHHHHHHHHhCCCccEE
Confidence 358999994 56888887 553 6889999999999999999987 55554 359999999999999999
Q ss_pred eeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCC
Q 003275 450 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 529 (834)
Q Consensus 450 ~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~ 529 (834)
++++..+++|.+.+.|+.||+....++++++..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 138 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSD----------------------------------------------- 138 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGG-----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCc-----------------------------------------------
Confidence 988999999999999999999999999998774
Q ss_pred cchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeC
Q 003275 530 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 609 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 609 (834)
...|++++||. |++||+..|
T Consensus 139 ----------------------------------------------------------~~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 139 ----------------------------------------------------------LATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp ----------------------------------------------------------TTTCSSGGGGC---CEEEEETT
T ss_pred ----------------------------------------------------------cccccCHHHhC--CCeEEEecC
Confidence 13788999996 899999999
Q ss_pred chhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCccc---ccceEEEE
Q 003275 610 SFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFT---KSGWGFAF 686 (834)
Q Consensus 610 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~---~~~~~~~~ 686 (834)
+....++.+.. +..+++.+++.++++++|.+ |++|+++.+.+.+.+++.+ +.++.+....+. ..++++++
T Consensus 159 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 231 (269)
T 4i62_A 159 SIQETMAKDLL--QNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVEN-NPDLAIADLNFEKEQDDSYAVAM 231 (269)
T ss_dssp SHHHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHH-CTTEEECSCCCCC-CCCEECCEE
T ss_pred chHHHHHHHhC--CCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHh-CCCCeEEeeccCCCcccceEEEE
Confidence 98888886533 34678889999999999999 9999999999999888887 556666654443 56789999
Q ss_pred cCCCc-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 687 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 687 ~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
+|++| +.+.+|++|.++.++|.+++|.+||++
T Consensus 232 ~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 232 KKDSKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp ESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 99998 999999999999999999999999987
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.80 E-value=2.9e-19 Score=187.96 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=188.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC---CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l---~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
++||||+. ..|+||.+.+. ++.+.|+++|+++.+++++ |++ +++++ ..|.+++..|.+|++|+++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEc--CCCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEEE
Confidence 57999994 56889988764 6899999999999999999 977 55554 2389999999999999999
Q ss_pred eeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCc
Q 003275 451 GDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 530 (834)
Q Consensus 451 ~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 530 (834)
+++..+.+|.+.++|+.||.....++++++..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------ 154 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------ 154 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS------------------------------------------------
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC------------------------------------------------
Confidence 88888999999999999999999999988765
Q ss_pred chhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCc
Q 003275 531 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 610 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s 610 (834)
.|++++||. |++||+..|+
T Consensus 155 -----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~ 173 (291)
T 2yjp_A 155 -----------------------------------------------------------PITDMAQLK--DQTLLVNKGT 173 (291)
T ss_dssp -----------------------------------------------------------CCCSGGGGT--TSEEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 678999996 8899999999
Q ss_pred hhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccce-EEEEcCC
Q 003275 611 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGW-GFAFQRD 689 (834)
Q Consensus 611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~-~~~~~k~ 689 (834)
....++.... +..+++.+.+.++++++|.+ |++|+++.+.+.+.+++++ ..++.++...+...++ +++++|+
T Consensus 174 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~ 246 (291)
T 2yjp_A 174 TADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKE-NPNFEVAIGNLGPAEFIAPAVQKG 246 (291)
T ss_dssp HHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHH-CTTEEEEECCSSSCEEECCEEETT
T ss_pred cHHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHh-CCCeEEcCCcccCCcceEEEEeCC
Confidence 8888886533 34567888999999999999 9999999999999888877 4568888777777777 9999999
Q ss_pred Cc-chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 690 SP-LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 690 sp-l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
+| +.+.||++|.++.++|.+++|.+||+.
T Consensus 247 ~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 247 NADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 98 999999999999999999999999987
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.72 E-value=2.3e-17 Score=169.92 Aligned_cols=215 Identities=15% Similarity=0.270 Sum_probs=178.4
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC---CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEE
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 449 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l---~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~ 449 (834)
.++|+||+ ...++||.+.+..++.+.|+++|+++.+++++ |++ +++.+ .+|.+++..|.+|++|++
T Consensus 37 ~~~l~vg~--~~~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~-------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGV--KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVA-------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEE--CSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEE-------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEE--CCCCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEE-------cCHHHHHHHHhCCCCCEE
Confidence 36799999 45678888876336889999999999999999 877 55554 348899999999999999
Q ss_pred eeeeeeecCceeeEEecceeeeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCC
Q 003275 450 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 529 (834)
Q Consensus 450 ~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~ 529 (834)
++++..+++|.+.++|+.||.....++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 988888889999999999999999999998765
Q ss_pred cchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeC
Q 003275 530 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 609 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~ 609 (834)
++++++||. ++++++..|
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 567899996 888999998
Q ss_pred chhhHHHHhhh---cccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccceEEEE
Q 003275 610 SFAWNYLVDEL---KIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAF 686 (834)
Q Consensus 610 s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~ 686 (834)
+....++.... +.+ .+++.+.+.++.+++|.. |++|+++.+.+.+.+++++ ..+ +++..+...++++++
T Consensus 157 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 228 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDD-KSE--ILPDSFEPQSYGIVT 228 (259)
T ss_dssp CSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCT-TEE--ECSCCCSEEEECCEE
T ss_pred CchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHh-CCC--ccccccccceeEEEE
Confidence 87777665422 222 256788999999999999 9999999998888877666 444 566666667889999
Q ss_pred cCCCc-chHHHHHHHHhhhccccHHHHHHhhc
Q 003275 687 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWL 717 (834)
Q Consensus 687 ~k~sp-l~~~~~~~i~~l~e~G~~~~i~~kw~ 717 (834)
+|++| +.+.+|++|.++.++ +++|.+||.
T Consensus 229 ~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 229 KKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp ETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 99986 999999999999999 999999994
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.80 E-value=4e-08 Score=103.17 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=143.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee-
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD- 452 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~- 452 (834)
++|+||+ .+.+.|+..... ..++++.+++++|.+ ++++.+ .+|++++..|..|++|+++.+
T Consensus 4 ~~l~iG~--~p~~~p~~~~~~--------~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~~ 65 (310)
T 3n5l_A 4 PVINFGI--ISTESSQNLKSI--------WEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYGN 65 (310)
T ss_dssp CEEEEEE--CCSSCHHHHHHH--------HHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECCH
T ss_pred cEEEEEE--ecCCCHHHHHHH--------HHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEECc
Confidence 6899999 455666554321 258999999999977 555542 569999999999999999754
Q ss_pred eeeec--CceeeEEecceeee-----ceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCC
Q 003275 453 ITIVT--NRTKLVDFTQPYME-----SGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFR 525 (834)
Q Consensus 453 ~~i~~--~r~~~vdfs~p~~~-----~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 525 (834)
..... +|.....|..++.. ...++++++.
T Consensus 66 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d-------------------------------------------- 101 (310)
T 3n5l_A 66 KAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD-------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT--------------------------------------------
T ss_pred HHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC--------------------------------------------
Confidence 33332 23233344433210 1124555543
Q ss_pred CCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhc--CCCC
Q 003275 526 GPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLIS--STEP 603 (834)
Q Consensus 526 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~--~~~~ 603 (834)
.+|++++||++ .+++
T Consensus 102 ---------------------------------------------------------------s~i~sl~DL~~~~kgk~ 118 (310)
T 3n5l_A 102 ---------------------------------------------------------------SKIDSLEDMLANAKSLT 118 (310)
T ss_dssp ---------------------------------------------------------------CSCCSHHHHHHTGGGCE
T ss_pred ---------------------------------------------------------------CCCCCHHHHhhhcCCCE
Confidence 37899999942 3667
Q ss_pred eeEe-eCchhh----HH-HHhhhcccc---cceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC---ccEE
Q 003275 604 IGVQ-DGSFAW----NY-LVDELKIAE---SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN---CEFR 671 (834)
Q Consensus 604 v~~~-~~s~~~----~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~---~~l~ 671 (834)
+++. .|+... .+ +....+.+. -..+...+..+.+.+|.. |++|+.+.+.+.+..+.++.. .++.
T Consensus 119 ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~~~~~~~~lr 194 (310)
T 3n5l_A 119 FGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTEGMERLELTQPEKARQLK 194 (310)
T ss_dssp EEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCHHHHTTEE
T ss_pred EEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecchhHHHHHHhCccchhCEE
Confidence 8863 344222 21 212334332 123444677789999998 999999999888887776521 2566
Q ss_pred EeCCcccccceEEEEcCCCc--chHHHHHHHHhhhccccHHHHHHhh
Q 003275 672 TVGQEFTKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 716 (834)
Q Consensus 672 ~v~~~~~~~~~~~~~~k~sp--l~~~~~~~i~~l~e~G~~~~i~~kw 716 (834)
++........++++++++.| +++.++.+|..+.++|..+++.+++
T Consensus 195 vl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~ 241 (310)
T 3n5l_A 195 VIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADL 241 (310)
T ss_dssp EEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHT
T ss_pred EEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhc
Confidence 66544344567899999954 9999999999999999998888776
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.75 E-value=5.4e-08 Score=102.41 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=141.4
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
+.++|++|+. +.+.|.... ....++++.|++++|.+ ++++.. .+|++++..|..|++|+++.
T Consensus 12 ~~~~l~~Gv~--p~~~~~~~~--------~~~~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGII--STESQQNLK--------PQWTPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEEC--CSSCHHHHH--------HHHHHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEe--cCCCHHHHH--------HHHHHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEE
Confidence 4578999993 334443321 22247999999999977 555542 57999999999999999974
Q ss_pred -eeeeecC--ceeeEEecceeee-----ceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCC
Q 003275 452 -DITIVTN--RTKLVDFTQPYME-----SGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNE 523 (834)
Q Consensus 452 -~~~i~~~--r~~~vdfs~p~~~-----~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~ 523 (834)
+.+.+.. |.....|..|+.. ...+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------ 111 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------ 111 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT------------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC------------------------------------------
Confidence 3444433 2233334433210 1124444433
Q ss_pred CCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhc--CC
Q 003275 524 FRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLIS--ST 601 (834)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~--~~ 601 (834)
.+|++++||++ .+
T Consensus 112 -----------------------------------------------------------------s~i~sl~DL~~~~kg 126 (321)
T 3p7i_A 112 -----------------------------------------------------------------SPINNLNDLLAKRKD 126 (321)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHHhhcCC
Confidence 37999999932 25
Q ss_pred CCeeEe-eCchhh----HH-HHhhhcccccc--eEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC---ccE
Q 003275 602 EPIGVQ-DGSFAW----NY-LVDELKIAESR--LVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN---CEF 670 (834)
Q Consensus 602 ~~v~~~-~~s~~~----~~-l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~---~~l 670 (834)
.++++. .|+... .+ +....+.+... .+.+.+..+.+.+|.. |++|+.+.+.+.+..+.++.. .++
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~~~~~~~~~p~~~~~l 202 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTENLDKLKTSAPEKLKEL 202 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHTHHHHCHHHHTTE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHHHHHHHHhCcchhccE
Confidence 678753 343221 22 21233443322 3446678889999999 999999999888877766421 257
Q ss_pred EEeCCcccccceEEEEcCCCc--chHHHHHHHHhhhccccHHHHHHhh
Q 003275 671 RTVGQEFTKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 716 (834)
Q Consensus 671 ~~v~~~~~~~~~~~~~~k~sp--l~~~~~~~i~~l~e~G~~~~i~~kw 716 (834)
.++........++++++++-| +++.++.+|..+.++|..+++.+++
T Consensus 203 rvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 203 KVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp EEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred EEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 777644444567899999954 9999999999999999988887766
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.60 E-value=4.2e-07 Score=88.76 Aligned_cols=185 Identities=10% Similarity=0.046 Sum_probs=129.7
Q ss_pred CCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecC------ceeeEEeccee
Q 003275 396 PPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTN------RTKLVDFTQPY 469 (834)
Q Consensus 396 ~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~------r~~~vdfs~p~ 469 (834)
..++.|+.--|.+.+. |++ +++..- -.+++.+..|++|++|+++.+++.+++ |...+|||.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~m------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEc------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 3567888888877773 655 555541 269999999999999999999999998 99999999999
Q ss_pred eeceEEEEEecCCCCCCcceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccCCC
Q 003275 470 MESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRE 549 (834)
Q Consensus 470 ~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 549 (834)
+.+.-.++++++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98787787776640
Q ss_pred cccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEe
Q 003275 550 NTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVK 629 (834)
Q Consensus 550 ~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 629 (834)
..| ++||+..||.-+..+.+.. .....+..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~-~~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVF-FGDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHH-HTTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhh-cCCCeEEE
Confidence 111 5799999998888876533 23455556
Q ss_pred c-CCHHHHHHHHhcCCCCCceEEEEe--chhhHHHHhhcCCccEEEeCC---cccccceEEEEcCCCc-chHHHHHHHHh
Q 003275 630 L-KNMEEYSIALARGPKGGGVAAIVD--ELPYIELFMSKTNCEFRTVGQ---EFTKSGWGFAFQRDSP-LAIDLSTAILQ 702 (834)
Q Consensus 630 ~-~~~~~~~~~l~~~~~~g~~~a~~~--~~~~~~~~~~~~~~~l~~v~~---~~~~~~~~~~~~k~sp-l~~~~~~~i~~ 702 (834)
+ .+..+++++|.+ |++||++. +.+... ... .-....+.. ......-.++++||.+ +++.+|+.|
T Consensus 140 ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~--~~~-~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I-- 210 (231)
T 2ozz_A 140 VDLSYHESLQRIVK----GDVDAVIWNVVAENEL--TML-GLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV-- 210 (231)
T ss_dssp EECCHHHHHHHHHH----TSCCEEEEEC-CHHHH--HHT-TEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC--
T ss_pred EECCHHHHHHHHHc----CCccEEEEcCcchhhh--cCC-CcceeccccccccccCCceEEEEECCCHHHHHHHHHHh--
Confidence 7 788999999999 99999999 655544 111 112222222 2233455688999975 888887765
Q ss_pred hhccccHHHHHHhhcC
Q 003275 703 LSENGDLQKIHNKWLT 718 (834)
Q Consensus 703 l~e~G~~~~i~~kw~~ 718 (834)
+...+-.++++-..
T Consensus 211 --~~~~v~~~Q~~V~~ 224 (231)
T 2ozz_A 211 --DKHALLAHQQRVVS 224 (231)
T ss_dssp --CHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHc
Confidence 33344455555443
No 77
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=98.04 E-value=2.7e-05 Score=81.52 Aligned_cols=121 Identities=13% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCCChhhhhcCCCCeeEeeCchhhHHHHh---hhcccccceE-ecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhc
Q 003275 590 QIEGIDSLISSTEPIGVQDGSFAWNYLVD---ELKIAESRLV-KLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSK 665 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~ 665 (834)
+|++++||. |+++++..|+.....+.. ..++....+. .+.+..+...++.+ |++|+++...++......+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHHH
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHhc
Confidence 688999997 889999888765544322 3344433332 34567889999999 8999999888887776554
Q ss_pred CCccEEEeCC--cccccceEEEEc----CCCc-chHHHHHHHHh----hhccc-cHHHHHHhhcC
Q 003275 666 TNCEFRTVGQ--EFTKSGWGFAFQ----RDSP-LAIDLSTAILQ----LSENG-DLQKIHNKWLT 718 (834)
Q Consensus 666 ~~~~l~~v~~--~~~~~~~~~~~~----k~sp-l~~~~~~~i~~----l~e~G-~~~~i~~kw~~ 718 (834)
.. +.++.. .+....-.+++. +..| +.+.|++++.+ +.+++ ...++..+|++
T Consensus 170 ~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 170 GG--VRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp SS--EEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred CC--cEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 22 333321 221112223332 3344 78888887776 34444 35566667764
No 78
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.89 E-value=0.00025 Score=74.77 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCCChhhhhcCCCCeeEeeCchhhHHHHh---hhccccc--ceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhh
Q 003275 590 QIEGIDSLISSTEPIGVQDGSFAWNYLVD---ELKIAES--RLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMS 664 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~ 664 (834)
+|++++||. |++|++..|+.....+.. ..+++.. +++.+ +..+...+|.+ |++|+++...++......
T Consensus 122 ~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~~ 194 (324)
T 3ksx_A 122 ALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALTL 194 (324)
T ss_dssp SCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHHH
T ss_pred CCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHHh
Confidence 799999997 999999988755443322 3344333 33444 67899999999 999999888888777655
Q ss_pred cCCccEEEeCCcccccceEEEEcCC
Q 003275 665 KTNCEFRTVGQEFTKSGWGFAFQRD 689 (834)
Q Consensus 665 ~~~~~l~~v~~~~~~~~~~~~~~k~ 689 (834)
+...+.......+......+++++.
T Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 195 DGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp TTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred cCCcEEEecccccCCCccEEEECHH
Confidence 5333433333333333344555543
No 79
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.72 E-value=0.00076 Score=69.97 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=83.1
Q ss_pred cCCCChhhhhc------CCCCeeEe-eCchhh---HHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhh
Q 003275 589 SQIEGIDSLIS------STEPIGVQ-DGSFAW---NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 658 (834)
Q Consensus 589 ~~i~s~~dL~~------~~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 658 (834)
.+++|++||+. ....+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 47999999984 23456665 355322 2333344554 345789999999999999 999999998776
Q ss_pred HHHHhhcCCcc-EEEeCC----------cc---------cccceEEEEcCCCc--chHHHHHHHHhhhccccHHHHHHhh
Q 003275 659 IELFMSKTNCE-FRTVGQ----------EF---------TKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 716 (834)
Q Consensus 659 ~~~~~~~~~~~-l~~v~~----------~~---------~~~~~~~~~~k~sp--l~~~~~~~i~~l~e~G~~~~i~~kw 716 (834)
...+++....+ +.+..+ .+ ....++++.|++-| +.+.+++++.++.+++.+++..+++
T Consensus 196 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 196 TTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 66555542322 222211 00 01236889999977 9999999999999999887766654
No 80
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.71 E-value=0.00019 Score=76.18 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=76.0
Q ss_pred CCCChhhh-hcCCCCeeEeeCchhhHHH----Hhhhcccc--cceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHH
Q 003275 590 QIEGIDSL-ISSTEPIGVQDGSFAWNYL----VDELKIAE--SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELF 662 (834)
Q Consensus 590 ~i~s~~dL-~~~~~~v~~~~~s~~~~~l----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~ 662 (834)
+|++++|| . |++|++..++....++ .+..+++. -+++.+ +..+...+|.+ |++|+++...++....
T Consensus 144 ~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~ 216 (341)
T 3un6_A 144 HLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGALG 216 (341)
T ss_dssp CGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHH
T ss_pred CCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHHH
Confidence 68899999 5 8899998765433322 12344443 344555 56788899998 9999999988887776
Q ss_pred hhcCCccEEEeCCcc-ccc-ceEEEEcCC----Cc-----chHHHHHHHHhhhccccHHHHHHhhcC
Q 003275 663 MSKTNCEFRTVGQEF-TKS-GWGFAFQRD----SP-----LAIDLSTAILQLSENGDLQKIHNKWLT 718 (834)
Q Consensus 663 ~~~~~~~l~~v~~~~-~~~-~~~~~~~k~----sp-----l~~~~~~~i~~l~e~G~~~~i~~kw~~ 718 (834)
..+...........+ ... ...++++++ .| +.+.+++++..+.+++.-.++..+|++
T Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 217 EKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 655233332222222 222 245666554 44 566666777777777644467777765
No 81
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.68 E-value=0.00033 Score=74.59 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCCChhhhhcCCCCeeEeeCchhhHHHHh---hhcccccc--eEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhh
Q 003275 590 QIEGIDSLISSTEPIGVQDGSFAWNYLVD---ELKIAESR--LVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMS 664 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~---~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~ 664 (834)
+|++++||. |++|++..|+.....+.. ..+++... ++.+ +..+...+|.+ |++|+++...+..... .
T Consensus 110 ~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~~~~~~~-~ 181 (348)
T 3uif_A 110 TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALAS----GTVDGFFSLFDSYILE-D 181 (348)
T ss_dssp CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHH----TSSSEEEESTTHHHHH-H
T ss_pred CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHc----CCCCEEEechHHHHHH-h
Confidence 799999997 999999888765443332 33444333 3333 67789999999 8999998887766432 3
Q ss_pred cCCccEEEeCCcc---cccceEEEEcCC----Cc-chHHHHHHHHhh
Q 003275 665 KTNCEFRTVGQEF---TKSGWGFAFQRD----SP-LAIDLSTAILQL 703 (834)
Q Consensus 665 ~~~~~l~~v~~~~---~~~~~~~~~~k~----sp-l~~~~~~~i~~l 703 (834)
+...........+ .....+++++++ .| +.+.|.+++.+.
T Consensus 182 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 182 RGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp TTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 3122222222211 122346666665 44 555665555443
No 82
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.67 E-value=0.00078 Score=69.64 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=82.4
Q ss_pred cCCCChhhhhcC------CCCeeEe-eCchhh---HHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhh
Q 003275 589 SQIEGIDSLISS------TEPIGVQ-DGSFAW---NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 658 (834)
Q Consensus 589 ~~i~s~~dL~~~------~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 658 (834)
.+++|++||+.. ...+|.. .|+..+ ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 378999999751 2345554 244322 2333344554 345789999999999999 999999988776
Q ss_pred HHHHhhcCCcc-EEEeCC----------c--------c-cccceEEEEcCCCc--chHHHHHHHHhhhccccHHHHHHhh
Q 003275 659 IELFMSKTNCE-FRTVGQ----------E--------F-TKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 716 (834)
Q Consensus 659 ~~~~~~~~~~~-l~~v~~----------~--------~-~~~~~~~~~~k~sp--l~~~~~~~i~~l~e~G~~~~i~~kw 716 (834)
...+++....+ +.+..+ . + ....++++.|++-| +.+.+++++.++.+++.+++..+++
T Consensus 187 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 187 AIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 65555542222 222211 0 1 11236889999976 9999999999999999888776665
No 83
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.64 E-value=0.00065 Score=70.57 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=82.8
Q ss_pred cCCCChhhhhcC------CCCeeEe-eCchhh---HHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhh
Q 003275 589 SQIEGIDSLISS------TEPIGVQ-DGSFAW---NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 658 (834)
Q Consensus 589 ~~i~s~~dL~~~------~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 658 (834)
.+++|++||+.. ...+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 378999999751 2345655 354322 2333444554 345789999999999999 999999998776
Q ss_pred HHHHhhcCCcc-EEEeCC---------------c---cc-ccceEEEEcCCCc--chHHHHHHHHhhhccccHHHHHHhh
Q 003275 659 IELFMSKTNCE-FRTVGQ---------------E---FT-KSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 716 (834)
Q Consensus 659 ~~~~~~~~~~~-l~~v~~---------------~---~~-~~~~~~~~~k~sp--l~~~~~~~i~~l~e~G~~~~i~~kw 716 (834)
...+++....+ +.+.++ - +. ...++++.|++-| +.+.+++++.++.+++.+++..+++
T Consensus 200 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 200 SMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 65555542322 322211 0 10 1236889999976 9999999999999999887776665
No 84
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.47 E-value=0.0013 Score=69.59 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=95.8
Q ss_pred HHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeee----cCceeeEEecceeeeceEEEEEecCCCCCC
Q 003275 411 VNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV----TNRTKLVDFTQPYMESGLVVVAPVQKLKSS 486 (834)
Q Consensus 411 ~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~----~~r~~~vdfs~p~~~~~~~~vv~~~~~~~~ 486 (834)
.+..|++ +++.++ +++..++..|.+|++|+++++.... .++.....++.++...+..+++++..
T Consensus 59 ~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 3567866 555543 5689999999999999998765443 45555666666666666666666543
Q ss_pred cceeccCCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccCCCcccccchhhhHHHHHHH
Q 003275 487 PWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFV 566 (834)
Q Consensus 487 ~~~~l~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~ 566 (834)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEe-eCchhhHHHH---hhhccc--ccceEecCCHHHHHHHH
Q 003275 567 VLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQ-DGSFAWNYLV---DELKIA--ESRLVKLKNMEEYSIAL 640 (834)
Q Consensus 567 ~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~-~~s~~~~~l~---~~~~~~--~~~~~~~~~~~~~~~~l 640 (834)
.++|++++||. |++|++. .|+....++. +..+.+ ..+++.+.+..+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13789999996 8899998 5765443332 234443 24556777778999999
Q ss_pred hcCCCCCceEEEEechhhHHHHhhc
Q 003275 641 ARGPKGGGVAAIVDELPYIELFMSK 665 (834)
Q Consensus 641 ~~~~~~g~~~a~~~~~~~~~~~~~~ 665 (834)
.+ |++|+++...++......+
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~ 204 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETS 204 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHT
T ss_pred Hc----CCccEEEecchhHHHHHhC
Confidence 99 8999999988887766555
No 85
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.30 E-value=0.001 Score=69.18 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=52.8
Q ss_pred CceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee-eeee---cCceeeEEecceeeec
Q 003275 397 PGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD-ITIV---TNRTKLVDFTQPYMES 472 (834)
Q Consensus 397 ~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~-~~i~---~~r~~~vdfs~p~~~~ 472 (834)
..+.|+.+.+-+-+.++.|++ +++.++ +....++..|.+|++|+++++ .... .+....+.+..++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 455678888878888888976 555543 334589999999999999886 2222 2333455666666666
Q ss_pred eEEEEEecCC
Q 003275 473 GLVVVAPVQK 482 (834)
Q Consensus 473 ~~~~vv~~~~ 482 (834)
+..+++++..
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 6777776543
No 86
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=96.76 E-value=0.0049 Score=62.78 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=92.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||....+... .....+...++|+|......+ + +.....++...+..+++.+...|-+++++|..+.
T Consensus 54 ~~vdgiI~~~~~~~~-~~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 124 (276)
T 2h0a_A 54 YLTDGLILASYDLTE-RFEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEE 124 (276)
T ss_dssp CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCS
T ss_pred CCCCEEEEecCCCCH-HHHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 456666643322222 333455667999998754332 1 3455667777788888888778999999998653
Q ss_pred -C-----ccc-chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCC--ceEEEEEeChhhHHHHHHHHHhCC
Q 003275 83 -D-----YGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME--SRVFVVHVNPDTGLTIFSVAKSLG 153 (834)
Q Consensus 83 -~-----~g~-~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~i~~~a~~~g 153 (834)
. ... ...+.+.+++++.|+.+.....+....+..+-...+.++.+.. +++|+ +.+...+..+++++++.|
T Consensus 125 ~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g 203 (276)
T 2h0a_A 125 PDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLG 203 (276)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTS
T ss_pred ccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcC
Confidence 2 445 6688999999999876432111111122334445555555443 56655 456677888999999999
Q ss_pred CCCCCeEEEE
Q 003275 154 MTAGSYVWIA 163 (834)
Q Consensus 154 ~~~~~~vwi~ 163 (834)
+..++-+.+.
T Consensus 204 ~~vP~di~vv 213 (276)
T 2h0a_A 204 LTPGRDVRVL 213 (276)
T ss_dssp CTTTTSEEEE
T ss_pred CCCCCCeEEE
Confidence 8765545444
No 87
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=96.74 E-value=0.019 Score=59.77 Aligned_cols=154 Identities=15% Similarity=0.105 Sum_probs=96.7
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc--CCeEEEEEE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIF 79 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~--~W~~v~iI~ 79 (834)
++|.+|| .|..+.........+...++|+|.+....+. .+.+..+..++...+..+++.+... |-++|++|.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~ 130 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGT 130 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4566665 4544443334445566789999987654321 1223345677777788888888666 899999998
Q ss_pred Ec--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 80 VD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 80 ~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
.+ +.......+.+.+++++.|+++...... ..+..+....+.++.+. .+++|+. .+...+..+++++++.|.
T Consensus 131 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~- 206 (313)
T 2h3h_A 131 GSLTAMNSLQRIQGFKDAIKDSEIEIVDILND--EEDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK- 206 (313)
T ss_dssp SCSSCHHHHHHHHHHHHHHTTSSCEEEEEEEC--SSCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-
T ss_pred CCCCCccHHHHHHHHHHHhcCCCCEEEEeecC--CCCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-
Confidence 64 3345566889999999999987643222 22334444555555443 3466554 455678889999999994
Q ss_pred CCCeEEEEeC
Q 003275 156 AGSYVWIATD 165 (834)
Q Consensus 156 ~~~~vwi~~~ 165 (834)
+.....+..|
T Consensus 207 p~dv~vvg~d 216 (313)
T 2h3h_A 207 VGKVKIVCFD 216 (313)
T ss_dssp TTTSEEEEEC
T ss_pred CCCeEEEEeC
Confidence 3333444444
No 88
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.70 E-value=0.005 Score=64.59 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCCChhhhhcCCCCeeEe-eCchhhH---HHHhhhcccccc--eEecCCHHHHHHHHhcCCCCCceEEEEec
Q 003275 590 QIEGIDSLISSTEPIGVQ-DGSFAWN---YLVDELKIAESR--LVKLKNMEEYSIALARGPKGGGVAAIVDE 655 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~-~~s~~~~---~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~~~~ 655 (834)
+|++++||. ++++++. .|+.... .+.+..+++... .+.|.+..+.+.+|.. |++|+++..
T Consensus 137 ~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~ 202 (327)
T 4ddd_A 137 NISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDV 202 (327)
T ss_dssp SCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEE
T ss_pred CCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEc
Confidence 789999997 7788884 4553322 222344554433 4678899999999999 899998874
No 89
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=96.65 E-value=0.0062 Score=62.69 Aligned_cols=155 Identities=10% Similarity=-0.057 Sum_probs=95.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhcc-CCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNE-LNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~-~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
.+|.+||....+.....+ ..+.. .++|+|......+ . +.+..+..++...+..+++.+...|.++|++|..+
T Consensus 76 ~~vdgii~~~~~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~ 148 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 148 (296)
T ss_dssp TTCSEEEEECSSSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred cCCCEEEEecCCCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 467777654332222233 34455 7999998754322 1 22334556666667888888877899999999865
Q ss_pred C--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 82 D--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 82 ~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
. ..+....+.+.+++++.|+.+.....+....+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..+
T Consensus 149 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 227 (296)
T 3brq_A 149 MDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVP 227 (296)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTT
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 3 3455668899999999997654322222222334444555665443 4666554 456678889999999998754
Q ss_pred Ce-EEEEeC
Q 003275 158 SY-VWIATD 165 (834)
Q Consensus 158 ~~-vwi~~~ 165 (834)
+- ..+..|
T Consensus 228 ~di~vvg~d 236 (296)
T 3brq_A 228 EQVSVIGFD 236 (296)
T ss_dssp TTCEEEEES
T ss_pred CceEEEeec
Confidence 43 344444
No 90
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.46 E-value=0.02 Score=58.67 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=93.4
Q ss_pred CCcEEEECCCChhhHHHHHHhhcc-CCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNE-LNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~-~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++|.+||........ .+.+.+.+ .++|+|......+. . ++...+..++...+..+++.+...|-++|++|..+
T Consensus 62 ~~vdgii~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~ 135 (289)
T 1dbq_A 62 KRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP 135 (289)
T ss_dssp TTCSEEEEECSCCCH-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeccCCH-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 456666643222211 22333333 79999987543321 1 22334556777778888888877899999999754
Q ss_pred --CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 82 --DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 82 --~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
........+.+.+++++.|+.+.....+....+..+....+.++.+. .+++|+. .+...+..+++++++.|+..+
T Consensus 136 ~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP 214 (289)
T 1dbq_A 136 LERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVP 214 (289)
T ss_dssp ------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTT
T ss_pred CccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 33566778999999999997654322222222333444555555443 4666554 456778889999999998754
Q ss_pred Ce-EEEEeC
Q 003275 158 SY-VWIATD 165 (834)
Q Consensus 158 ~~-vwi~~~ 165 (834)
+- ..+..|
T Consensus 215 ~di~vvg~d 223 (289)
T 1dbq_A 215 QDVSLIGYD 223 (289)
T ss_dssp TTCEEEEEE
T ss_pred CceEEEeeC
Confidence 43 333333
No 91
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.38 E-value=0.0049 Score=63.30 Aligned_cols=150 Identities=11% Similarity=-0.043 Sum_probs=91.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||....+.....+..+ .++|+|......+. +.+..+..++...+..+++.+...|-++|++|..+.
T Consensus 62 ~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~ 132 (288)
T 2qu7_A 62 QNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANP 132 (288)
T ss_dssp TTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCT
T ss_pred cCccEEEEecCCCChHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 467877765433222222222 68999987553321 223345667777788888888778999999998643
Q ss_pred --CcccchHHHHHHHHhcCCcEEEeeecC--CCCC----ChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 83 --DYGRNGISVLGDALSKKRAKISYKAPF--SPGA----SRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~I~~~~~~--~~~~----~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
.......+.+.+++++.|+.+.....+ .... +..+-...+.++.+..+++|+. .+...+..+++++++.|+
T Consensus 133 ~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~ 211 (288)
T 2qu7_A 133 NISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEK 211 (288)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCC
Confidence 345566788999999998765422112 2111 1222233344443336777664 456678889999999998
Q ss_pred CCCCeEEE
Q 003275 155 TAGSYVWI 162 (834)
Q Consensus 155 ~~~~~vwi 162 (834)
..++-+-+
T Consensus 212 ~vP~di~v 219 (288)
T 2qu7_A 212 EIKKDVII 219 (288)
T ss_dssp CBTTTBEE
T ss_pred CCCCceEE
Confidence 75443333
No 92
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=96.27 E-value=0.12 Score=49.69 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=57.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||+... -...+-.+++..+.+..+ .+.+++.. ++...+.++|.+|++|+++...
T Consensus 4 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIFT--------------VAPYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEETT--------------THHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcch--------------hhHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 5789998322 112455778888888775 35566654 4578999999999999998755
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... .+ -+.++....+++++++..
T Consensus 62 ~~~~~---~~-~~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 62 PFQEP---GI-VTEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp SCCCT---TE-EEEEEEEEEEEEEEETTC
T ss_pred CCCCC---Ce-eEEEeeeceEEEEEeCCC
Confidence 33322 22 246778888999998765
No 93
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.19 E-value=0.055 Score=54.73 Aligned_cols=152 Identities=16% Similarity=0.073 Sum_probs=96.5
Q ss_pred cEEEEC-CCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc----CCeEEEEEE
Q 003275 5 VVAAIG-PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY----GWREVIAIF 79 (834)
Q Consensus 5 V~aiiG-p~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~----~W~~v~iI~ 79 (834)
|.+||- |..+.........+...++|+|.+....+. .+.+.....++...+..+++.+... |-+++++|.
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~ 134 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLR 134 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECB
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEE
Confidence 555554 333344455556677889999987653321 1223445677778888888888777 899999997
Q ss_pred Ec--CCcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 80 VD--DDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 80 ~d--~~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
.+ ........+.+.+++++. |+++... .....+.......+.++.+. .+++|+ +.+...+..+++++++.|+
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 135 LRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC
T ss_pred cCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC
Confidence 54 334556788999999998 8887632 22222334444555555443 345543 3455677889999999997
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
+.....+..|
T Consensus 212 -p~di~vig~d 221 (276)
T 3ksm_A 212 -SKQFGFIGFD 221 (276)
T ss_dssp -TTSSEEEEES
T ss_pred -CCCeEEEEeC
Confidence 4444444443
No 94
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.18 E-value=0.038 Score=57.62 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=53.0
Q ss_pred CCCChhhhhcCCCCeeEee-CchhhH---HHHhhhcccc-cceEecCCHHHHHHHHhcCCCCC----ceEEEEechhhHH
Q 003275 590 QIEGIDSLISSTEPIGVQD-GSFAWN---YLVDELKIAE-SRLVKLKNMEEYSIALARGPKGG----GVAAIVDELPYIE 660 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g----~~~a~~~~~~~~~ 660 (834)
+|++++|| ++||+.. |+...- .+.+..+++. .+++.+++..+...+|.. | ++||++.+.....
T Consensus 111 ~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~~ 182 (321)
T 2x7q_A 111 DVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTSK 182 (321)
T ss_dssp TCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHHH
T ss_pred CCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccch
Confidence 78999999 5799986 654332 2222344442 456677788899999998 8 8999876533333
Q ss_pred HHhhcCCccEEEeCCcccccc-eEEEEcCC
Q 003275 661 LFMSKTNCEFRTVGQEFTKSG-WGFAFQRD 689 (834)
Q Consensus 661 ~~~~~~~~~l~~v~~~~~~~~-~~~~~~k~ 689 (834)
..... ..+..+.+.....+ .+++++++
T Consensus 183 ~~~~~--g~~~~~~d~~~~~~~~~l~~~~~ 210 (321)
T 2x7q_A 183 KYYDN--HEIKQIDQIYTPWSSWVVATSSD 210 (321)
T ss_dssp HHHHT--TSEEEEEEEECSSCSEEEEEEHH
T ss_pred hhccC--CceEEccccCCCCceEEEEEcHH
Confidence 22222 23444433222222 36666654
No 95
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.17 E-value=0.016 Score=59.41 Aligned_cols=149 Identities=13% Similarity=0.032 Sum_probs=89.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc-
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD- 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d- 81 (834)
++|.+||........ .....+...++|+|......+. + +.....++...+..+++.+...|-+++++|..+
T Consensus 64 ~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 135 (290)
T 3clk_A 64 RPVMGILLLSIALTD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQ 135 (290)
T ss_dssp SCCSEEEEESCC-----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCC
T ss_pred cCCCEEEEecccCCH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 456666643222222 2234455689999987543321 2 334566777778888888877899999999754
Q ss_pred -CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 82 -DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 82 -~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
........+.+.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..++-
T Consensus 136 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~d 214 (290)
T 3clk_A 136 YPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPKD 214 (290)
T ss_dssp CTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCc
Confidence 3345567889999999998765321112212233344445555543 34566554 55667888999999999875443
Q ss_pred E
Q 003275 160 V 160 (834)
Q Consensus 160 v 160 (834)
+
T Consensus 215 i 215 (290)
T 3clk_A 215 L 215 (290)
T ss_dssp C
T ss_pred e
Confidence 3
No 96
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.15 E-value=0.029 Score=56.85 Aligned_cols=136 Identities=10% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHhc
Q 003275 21 SHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSK 98 (834)
Q Consensus 21 ~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~~ 98 (834)
...+...++|+|......+ . +.+..+..++...+..+++.+...|-+++++|..+.. ......+.+.+++++
T Consensus 75 ~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 148 (275)
T 3d8u_A 75 HQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIE 148 (275)
T ss_dssp HHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHH
Confidence 3445567999998754322 1 2234566677777788888887779999999986533 345668889999999
Q ss_pred CCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 99 KRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 99 ~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
+|+.+.....+....+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 149 NYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp TTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 987543222222222334444455555443 356655 4556678889999999998755444443
No 97
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.06 E-value=0.0027 Score=53.64 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=60.6
Q ss_pred HHHHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEE
Q 003275 505 FFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSIL 582 (834)
Q Consensus 505 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 582 (834)
.+++.+.+++.+|+..+ ++...++..++|+++.++.-.| .-.|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777776542 3345679999999999998765 55899999999999999999999999999988776
Q ss_pred EEe
Q 003275 583 TVQ 585 (834)
Q Consensus 583 t~~ 585 (834)
+..
T Consensus 94 ~~~ 96 (103)
T 2k1e_A 94 VRR 96 (103)
T ss_dssp GGH
T ss_pred HHH
Confidence 543
No 98
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=96.06 E-value=0.13 Score=49.67 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=57.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||+... -...+-.+++..+.+..+ .+.+++.. ++..+++.+|.+|++|+++...
T Consensus 8 g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~~ 65 (222)
T 4ab5_A 8 GELRIAVECH--------------TCFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVSE 65 (222)
T ss_dssp EEEEEECCCT--------------TTHHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEESC
T ss_pred ceEEEEEehH--------------HHHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEecC
Confidence 5789998321 112455778888888876 35566654 4567889999999999998754
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... .+ -+.++....+++++++..
T Consensus 66 ~~~~~---~~-~~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 66 AEKQN---GI-SFQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCCCT---TE-EEEEEEEEEEEEEECTTS
T ss_pred CCCcC---Ce-EEEEeecCcEEEEecCCC
Confidence 33222 22 256788888999988765
No 99
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=96.04 E-value=0.026 Score=58.15 Aligned_cols=149 Identities=9% Similarity=-0.003 Sum_probs=97.3
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcC--CeEEEEEE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG--WREVIAIF 79 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~--W~~v~iI~ 79 (834)
++|.+|| .|..+.........+...++|+|......+... ..+.+.....++...+..+++.+...| -+++++|.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 137 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLN 137 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3555554 565555445556667778999998765443211 123444566778888888888887777 89999997
Q ss_pred EcC--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 80 VDD--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
.+. .......+.+.+++++.|+++.... . ..........+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 138 g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 138 PQPGHIGLEKRAYGIKTILQDKGIFFEELD--V-GTDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--C-CSCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCeEEEee--c-CCChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCc
Confidence 543 3344567899999999999987644 1 12334444555554333 345543 45667778899999998875
Q ss_pred CC
Q 003275 156 AG 157 (834)
Q Consensus 156 ~~ 157 (834)
.+
T Consensus 214 vP 215 (297)
T 3rot_A 214 DF 215 (297)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 100
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.00 E-value=0.073 Score=54.37 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=91.0
Q ss_pred HHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHhc
Q 003275 21 SHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSK 98 (834)
Q Consensus 21 ~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~~ 98 (834)
...+...++|+|......+ ... +-.+..++...+..+++.+...|-+++++|..+.. ......+.+.+++++
T Consensus 82 ~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~ 155 (288)
T 3gv0_A 82 VRFMTERNMPFVTHGRSDM---GIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRD 155 (288)
T ss_dssp HHHHHHTTCCEEEESCCCS---SCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEECCcCC---CCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHH
Confidence 4556678999998754332 112 23355677777888888888889999999976533 345568899999999
Q ss_pred CCcEEEeeecCCCCCChHHHHHHHHHhhcCC--ceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEE
Q 003275 99 KRAKISYKAPFSPGASRSAINSLLVGANLME--SRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 162 (834)
Q Consensus 99 ~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi 162 (834)
.|+.+.....+....+..+....+.++.+.. +++|+ +.+...+..+++++++.|+..++-+-|
T Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 220 (288)
T 3gv0_A 156 FGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDI 220 (288)
T ss_dssp TTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEE
T ss_pred cCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9988754433333334455556666665543 55554 456677888999999999875544333
No 101
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.00 E-value=0.041 Score=56.17 Aligned_cols=148 Identities=12% Similarity=0.017 Sum_probs=90.9
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||..........+. .+. .++|+|......+ +.. +..+..++...+..+++.+...|-++|++|..+.
T Consensus 63 ~~vdgiI~~~~~~~~~~~~-~l~-~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 134 (285)
T 3c3k_A 63 KMVDGVITMDALSELPELQ-NII-GAFPWVQCAEYDP---LST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDL 134 (285)
T ss_dssp TCCSEEEECCCGGGHHHHH-HHH-TTSSEEEESSCCT---TSS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCT
T ss_pred CCCCEEEEeCCCCChHHHH-HHh-cCCCEEEEccccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4677777543332222333 344 8999998754332 112 2335566666777888888777999999998653
Q ss_pred C--cccchHHHHHHHHhcCCcEEE-eeecCCCCCChHHHHHHHHH--hhcC--CceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 83 D--YGRNGISVLGDALSKKRAKIS-YKAPFSPGASRSAINSLLVG--ANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~-~~~~~~~~~~~~~~~~~l~~--l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
. ......+.+.+++++.|+.+. ..... +..+-...+.+ +.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 135 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 135 AYQYAQHRESGYLNRLKFHGLDYSRISYAE----NLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCCCEEEECS----SSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHHHHHHcCCCceEeecCC----ChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCC
Confidence 2 345567889999999887643 11111 12233344555 4443 466655 45566788899999999987
Q ss_pred CCCeEEEE
Q 003275 156 AGSYVWIA 163 (834)
Q Consensus 156 ~~~~vwi~ 163 (834)
.++-+-++
T Consensus 210 vP~di~vv 217 (285)
T 3c3k_A 210 IPQDVAVV 217 (285)
T ss_dssp TTTTCEEE
T ss_pred CCCceEEE
Confidence 55444443
No 102
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=95.97 E-value=0.098 Score=54.69 Aligned_cols=148 Identities=12% Similarity=-0.026 Sum_probs=94.2
Q ss_pred cEEEECCCChh-hHHHHHHhhccCCccEEecccCCCCCCCCCC--CceEEccCChHHHHHHHHHHHHH--cCCeEEEEEE
Q 003275 5 VVAAIGPQSSG-IAHVISHVVNELNVPLLSFGATDPTLTSLQY--PYFLRTTQSDYYQMHAVADLVEY--YGWREVIAIF 79 (834)
Q Consensus 5 V~aiiGp~~S~-~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~--p~~~r~~ps~~~q~~aia~ll~~--~~W~~v~iI~ 79 (834)
|.+||...... ........+...++|+|......+......+ +.+..+..++...+..+++.+.. .|-++|++|.
T Consensus 64 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 143 (332)
T 2rjo_A 64 NLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALG 143 (332)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 88877643333 2223445556679999987654332111111 34556777888888888888866 6999999998
Q ss_pred EcC--CcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcC---CceEEEEEeChhhHHHHHHHHHhCC
Q 003275 80 VDD--DYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM---ESRVFVVHVNPDTGLTIFSVAKSLG 153 (834)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivl~~~~~~~~~i~~~a~~~g 153 (834)
... .......+.+.+++++. |+.+...... ..+..+....+.++.+. .+++|+ +.+...+..+++++++.|
T Consensus 144 g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G 220 (332)
T 2rjo_A 144 GIFSNVPAIERKAGLDAALKKFPGIQLLDFQVA--DWNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEG 220 (332)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEEeeccC--CCCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcC
Confidence 542 34556688899999999 9887543211 22334444455555443 355544 355667888999999999
Q ss_pred CC
Q 003275 154 MT 155 (834)
Q Consensus 154 ~~ 155 (834)
+.
T Consensus 221 ~~ 222 (332)
T 2rjo_A 221 LA 222 (332)
T ss_dssp CB
T ss_pred CC
Confidence 75
No 103
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=95.96 E-value=0.033 Score=56.93 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=93.5
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||-....... .....+...++|+|......+ .... .....++...+..+++.+...|-++|++|..+.
T Consensus 63 ~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 135 (287)
T 3bbl_A 63 GNVDGFVLSSINYND-PRVQFLLKQKFPFVAFGRSNP---DWDF---AWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPE 135 (287)
T ss_dssp TCCSEEEECSCCTTC-HHHHHHHHTTCCEEEESCCST---TCCC---CEEEECHHHHHHHHHHHHHHHTCCCEEEEECCT
T ss_pred CCCCEEEEeecCCCc-HHHHHHHhcCCCEEEECCcCC---CCCC---CEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 466666643222212 233445567999998754322 1122 234566677777788888777999999998653
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-C---CceEEEEEeChhhHHHHHHHHHhCCCCC
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-M---ESRVFVVHVNPDTGLTIFSVAKSLGMTA 156 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~vivl~~~~~~~~~i~~~a~~~g~~~ 156 (834)
. ......+.+.+++++.|+.+.....+....+..+-...+.++.+ . .+++|+. .+...+..+++++++.|+..
T Consensus 136 ~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~v 214 (287)
T 3bbl_A 136 DSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTI 214 (287)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCB
T ss_pred ccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCC
Confidence 2 34566788999999998765322111112233344445555544 3 4566554 56667888999999999875
Q ss_pred CC-eEEEEeC
Q 003275 157 GS-YVWIATD 165 (834)
Q Consensus 157 ~~-~vwi~~~ 165 (834)
++ ...+..|
T Consensus 215 P~di~vig~d 224 (287)
T 3bbl_A 215 GTDLAIIGFD 224 (287)
T ss_dssp TTTBEEEEES
T ss_pred CCCEEEEEEC
Confidence 44 3344444
No 104
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.96 E-value=0.06 Score=55.04 Aligned_cols=144 Identities=13% Similarity=-0.012 Sum_probs=93.9
Q ss_pred CcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH--cCCeEEEEEEE
Q 003275 4 EVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY--YGWREVIAIFV 80 (834)
Q Consensus 4 ~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~--~~W~~v~iI~~ 80 (834)
+|.+|| .|..+.........+...++|+|......+ +.+-....++...+..+++.+.. .|-+++++|..
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~ 133 (291)
T 3l49_A 61 KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNG 133 (291)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeC
Confidence 555555 565555566666777788999998765332 12334566777778888888877 89999999974
Q ss_pred cCC--cccchHHHHHHHHhcC-CcEEEeeecCCCCC-ChHHHHHHHHHhhcC-----CceEEEEEeChhhHHHHHHHHHh
Q 003275 81 DDD--YGRNGISVLGDALSKK-RAKISYKAPFSPGA-SRSAINSLLVGANLM-----ESRVFVVHVNPDTGLTIFSVAKS 151 (834)
Q Consensus 81 d~~--~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~-~~~~~~~~l~~l~~~-----~~~vivl~~~~~~~~~i~~~a~~ 151 (834)
+.. ......+.+.+++++. |+++.....+.... +.......+.++.+. .+++| ++.+...+..+++++++
T Consensus 134 ~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~ 212 (291)
T 3l49_A 134 FYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQA 212 (291)
T ss_dssp CTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHH
Confidence 432 3344578899999998 67765433333221 223333444444433 45665 44566788889999999
Q ss_pred CCCC
Q 003275 152 LGMT 155 (834)
Q Consensus 152 ~g~~ 155 (834)
.|+.
T Consensus 213 ~g~~ 216 (291)
T 3l49_A 213 AGRT 216 (291)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9986
No 105
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=95.96 E-value=0.021 Score=58.52 Aligned_cols=155 Identities=8% Similarity=-0.075 Sum_probs=92.3
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-........ ....+...++|+|......+. +.+.....++...+..+++.+...|-++|++|..+.
T Consensus 66 ~~vdgiIi~~~~~~~~-~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 138 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDE-DLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPF 138 (290)
T ss_dssp TTCSEEEECCSSSCHH-HHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred cCccEEEEecCCCCHH-HHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 3566666432222222 233445579999987543321 122345566777778888888778999999998653
Q ss_pred --CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 --DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
.......+.+.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 139 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~ 217 (290)
T 2rgy_A 139 TASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPG 217 (290)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 234556788999999998754321111111222333334444432 3567665 45667788899999999987544
Q ss_pred e-EEEEeC
Q 003275 159 Y-VWIATD 165 (834)
Q Consensus 159 ~-vwi~~~ 165 (834)
- ..+..|
T Consensus 218 di~vvg~D 225 (290)
T 2rgy_A 218 DVSVIGYD 225 (290)
T ss_dssp TCEEEEEE
T ss_pred ceEEEEeC
Confidence 3 334433
No 106
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=95.95 E-value=0.12 Score=53.20 Aligned_cols=146 Identities=7% Similarity=-0.049 Sum_probs=89.9
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH-cCCe-EEEEEE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YGWR-EVIAIF 79 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~-~~W~-~v~iI~ 79 (834)
++|.+|| .|..+.........+...++|+|.+.... ... +.+.....++...+..+++.+.. .|-+ +++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~ 134 (303)
T 3d02_A 60 RKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYV 134 (303)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEe
Confidence 4566654 56555444445566677899999875431 111 33445667777778888888766 7887 888887
Q ss_pred EcC--CcccchHHHHHHHHhcCC--cEEEeeecCCCCCChHHHHHHHHHhhcCC--ceEEEEEeChhhHHHHHHHHHhCC
Q 003275 80 VDD--DYGRNGISVLGDALSKKR--AKISYKAPFSPGASRSAINSLLVGANLME--SRVFVVHVNPDTGLTIFSVAKSLG 153 (834)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~g--~~I~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~i~~~a~~~g 153 (834)
.+. .......+.+.+++++.+ +++... .+....+..+....+.++.+.. +++|+. .+...+..+++++++.|
T Consensus 135 g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g 212 (303)
T 3d02_A 135 GSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKR 212 (303)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcC
Confidence 432 334456788999998764 444322 1121223344455566655443 444443 44567888999999999
Q ss_pred CC
Q 003275 154 MT 155 (834)
Q Consensus 154 ~~ 155 (834)
+.
T Consensus 213 ~~ 214 (303)
T 3d02_A 213 AK 214 (303)
T ss_dssp CT
T ss_pred CC
Confidence 86
No 107
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.92 E-value=0.031 Score=57.29 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=95.4
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-....... .....+...++|+|......+.. +.+.....++...+..+++.+...|-+++++|..+.
T Consensus 68 ~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 141 (292)
T 3k4h_A 68 RQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGS 141 (292)
T ss_dssp TCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCT
T ss_pred CCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcc
Confidence 456665532222222 34456677899999875433211 113345667777788888888888999999998653
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
. ......+.+.+++++.|+.+.....+....+.......+.++.+. .+++|+ +++...+..+++++++.|+..++
T Consensus 142 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 220 (292)
T 3k4h_A 142 DLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPK 220 (292)
T ss_dssp TBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred cchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCC
Confidence 3 344567899999999988654322222222334445556665554 455654 45667788999999999987544
Q ss_pred eE
Q 003275 159 YV 160 (834)
Q Consensus 159 ~v 160 (834)
-+
T Consensus 221 di 222 (292)
T 3k4h_A 221 DV 222 (292)
T ss_dssp TC
T ss_pred eE
Confidence 33
No 108
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=95.91 E-value=0.026 Score=59.29 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=91.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||-.........+ ..+...++|+|......+ ...++ ....++..-+..+++.+...|-+++++|..+.
T Consensus 118 ~~vdgiI~~~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 190 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIR-TSLKNSRTPVVLVGTIDG---DKEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSL 190 (332)
T ss_dssp TTCSEEEECSSCCCHHHH-HHHHHHCCCEEEESCCCT---TSCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCT
T ss_pred CCCCEEEEeCCCCCHHHH-HHHHhCCCCEEEEccccC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 456666643222222223 334467899998754332 11222 34566666677788888778999999998653
Q ss_pred --CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 83 --DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
.......+.+.+++++.|+.+.....+....+..+-...+.++.+..+++|+. .+...+..+++++++.|+..++-+
T Consensus 191 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di 269 (332)
T 2o20_A 191 KDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDF 269 (332)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCE
Confidence 23455678899999999976542212221222233333344433236777665 566678889999999998755444
Q ss_pred EEE
Q 003275 161 WIA 163 (834)
Q Consensus 161 wi~ 163 (834)
-++
T Consensus 270 svi 272 (332)
T 2o20_A 270 EII 272 (332)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 109
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=95.89 E-value=0.019 Score=60.26 Aligned_cols=155 Identities=9% Similarity=-0.026 Sum_probs=93.4
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||-........ ....+...++|+|......+ ... +.....++...+..+++.+...|-+++++|..+.
T Consensus 115 ~~vdgiI~~~~~~~~~-~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 115 KQVDGIIFMSGNVTEE-HVEELKKSPVPVVLAASIES---TNQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTL 187 (332)
T ss_dssp CSSCCEEECCSSCCHH-HHHHHTTSSSCEEEESCCCS---CTT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCT
T ss_pred CCCcEEEEecCCCCHH-HHHHHHhCCCCEEEEccccC---CCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4676666433222222 33445567999998754332 112 2234556666677778888778999999998653
Q ss_pred ---CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 83 ---DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 83 ---~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
.......+.+.+++++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..+
T Consensus 188 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP 266 (332)
T 2hsg_A 188 EEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVP 266 (332)
T ss_dssp TSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHH
T ss_pred ccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 2355678899999999997653211111112223334445555433 466665 4566778889999999998644
Q ss_pred CeE-EEEeC
Q 003275 158 SYV-WIATD 165 (834)
Q Consensus 158 ~~v-wi~~~ 165 (834)
+-+ .+..|
T Consensus 267 ~disvvg~D 275 (332)
T 2hsg_A 267 NDLEIIGFD 275 (332)
T ss_dssp HHCEEEEES
T ss_pred CCeEEEEEC
Confidence 333 34434
No 110
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=95.89 E-value=0.044 Score=56.00 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=95.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-.........+... ...++|+|......+ .+-....++..-+..+++.+...|-+++++|..+.
T Consensus 67 ~~vdgiIi~~~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~ 137 (289)
T 3g85_A 67 NSFDAAIIANISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTES 137 (289)
T ss_dssp TCCSEEEESSCCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCC
T ss_pred cCCCEEEEecCCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 456665544333333333333 367899998765322 22345667777788888888888999999998653
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
. ......+.+.+++++.|+.+.....+....+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 138 ~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 216 (289)
T 3g85_A 138 LNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPD 216 (289)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred ccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCC
Confidence 3 345568899999999998653222222222334445556666554 355554 45667788899999999987654
Q ss_pred eEEEE
Q 003275 159 YVWIA 163 (834)
Q Consensus 159 ~vwi~ 163 (834)
-+-++
T Consensus 217 di~vi 221 (289)
T 3g85_A 217 DIEIV 221 (289)
T ss_dssp TCEEE
T ss_pred ceEEE
Confidence 44333
No 111
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=95.87 E-value=0.074 Score=53.93 Aligned_cols=132 Identities=8% Similarity=0.026 Sum_probs=86.7
Q ss_pred HhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHhcC
Q 003275 22 HVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSKK 99 (834)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~~~ 99 (834)
..+...++|+|......+ . +.+..+..++...+..+++.+...|-+++++|..+.. ......+.+.+++++.
T Consensus 74 ~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~ 147 (277)
T 3cs3_A 74 EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRF 147 (277)
T ss_dssp HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHc
Confidence 344568999998754322 1 2244556677777777888887789999999986532 3445678899999999
Q ss_pred CcEEEeeecCCCCCChHHHHHHHHHhhcC---CceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 100 RAKISYKAPFSPGASRSAINSLLVGANLM---ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 100 g~~I~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
|+.+. . +....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.++
T Consensus 148 g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 148 GIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp TCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred CCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 98765 1 11122334444556666544 455544 4566678889999999998765555554
No 112
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=95.84 E-value=0.031 Score=58.77 Aligned_cols=156 Identities=10% Similarity=-0.029 Sum_probs=97.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-.........+...+...++|+|......+. .. +.....++..-+..+++.+...|-+++++|..+.
T Consensus 118 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 191 (338)
T 3dbi_A 118 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK---NS---SHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSM 191 (338)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS---SG---GGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC---CC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 35666654333333345667788889999987543322 11 2235566777777788888888999999997542
Q ss_pred --CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 --DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
.......+.+.+++++.|+.+.....+....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 192 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 270 (338)
T 3dbi_A 192 DSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPE 270 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 344556888999999999765432222222233344444555543 3456655 45666788899999999987654
Q ss_pred eE-EEEeC
Q 003275 159 YV-WIATD 165 (834)
Q Consensus 159 ~v-wi~~~ 165 (834)
-+ .+..|
T Consensus 271 di~vvg~D 278 (338)
T 3dbi_A 271 QVSVIGFD 278 (338)
T ss_dssp TCEEEEES
T ss_pred CeEEEEEC
Confidence 44 44444
No 113
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=95.84 E-value=0.087 Score=54.33 Aligned_cols=150 Identities=11% Similarity=-0.015 Sum_probs=92.4
Q ss_pred CCcEEEEC-CCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH------------
Q 003275 3 NEVVAAIG-PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY------------ 69 (834)
Q Consensus 3 ~~V~aiiG-p~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~------------ 69 (834)
++|.+||- |............+...++|+|.+....+......++.+.....++...+..+++.+..
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g 137 (309)
T 2fvy_A 58 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK 137 (309)
T ss_dssp TTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTC
T ss_pred cCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccC
Confidence 45666654 33333333444556678999998754322110012345666777888888888888765
Q ss_pred cCCeEEEEEEEcC--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC----CceEEEEEeChhhHH
Q 003275 70 YGWREVIAIFVDD--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM----ESRVFVVHVNPDTGL 143 (834)
Q Consensus 70 ~~W~~v~iI~~d~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~----~~~vivl~~~~~~~~ 143 (834)
.|-++|++|.... .......+.+.+++++.|+.+.....+....+...-...+.++.+. .+++|+. .+...+.
T Consensus 138 ~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~ 216 (309)
T 2fvy_A 138 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAM 216 (309)
T ss_dssp SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHH
T ss_pred CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHH
Confidence 6888999998542 3445668889999999987654322222222333444455555443 4566553 5566788
Q ss_pred HHHHHHHhCC
Q 003275 144 TIFSVAKSLG 153 (834)
Q Consensus 144 ~i~~~a~~~g 153 (834)
.+++++++.|
T Consensus 217 g~~~al~~~g 226 (309)
T 2fvy_A 217 GAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8999999988
No 114
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=95.82 E-value=0.021 Score=58.21 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=90.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+|| -........+.. .++|+|......+ .....+ ....++...+..+++.+...|-+++++|..+.
T Consensus 59 ~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 128 (280)
T 3gyb_A 59 MRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGS 128 (280)
T ss_dssp TCCSEEE-EESCC------------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred CCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 4677777 322222222222 8999998765442 122223 24556777788888888888999999998765
Q ss_pred CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 83 DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
.......+.+.+++++.|+.+.... .....+..+-...+.++.+. .+++|+ +++...+..+++++++.|+..++-+
T Consensus 129 ~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 206 (280)
T 3gyb_A 129 GAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDL 206 (280)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred chHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCee
Confidence 4456668899999999998765333 33223334444444444433 355554 4566788889999999998755433
Q ss_pred EE
Q 003275 161 WI 162 (834)
Q Consensus 161 wi 162 (834)
-|
T Consensus 207 ~v 208 (280)
T 3gyb_A 207 SI 208 (280)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 115
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.81 E-value=0.11 Score=50.48 Aligned_cols=83 Identities=12% Similarity=-0.086 Sum_probs=59.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|+||+... -...+-.+++..+.+..+ .+.+++.. ++..++..+|.+|++|+++...
T Consensus 11 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 11 GRLNIAVLPT--------------IAPYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred eeEEEEeccc--------------cchhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEcC
Confidence 5789998321 113456788888888876 45566664 5688999999999999998765
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... .+ -+.++....+++++++..
T Consensus 69 ~~~~~---~l-~~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 69 KAETE---GL-EDDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CCCCT---TE-EEEEEEEEEEEEEECTTS
T ss_pred CCCCC---Ce-EEEEecccCEEEEEcCCC
Confidence 43332 22 246788889999998765
No 116
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=95.81 E-value=0.048 Score=55.83 Aligned_cols=155 Identities=9% Similarity=0.003 Sum_probs=94.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||-.........+ ..+...++|+|......+ ... +-....++..-+..+++.+...|-+++++|..+.
T Consensus 71 ~~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHV-AEFKRSPVPIVLAASVEE---QEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp TTCSEEEECCSCCCHHHH-HHHHHSSSCEEEESCCCT---TCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCT
T ss_pred CCCCEEEEecCCCCHHHH-HHHHhcCCCEEEEccccC---CCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 456666543222122223 334567999998754332 112 2245567777788888888778999999998653
Q ss_pred ---CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 83 ---DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 83 ---~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
.......+.+.+++++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..+
T Consensus 144 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP 222 (289)
T 2fep_A 144 AEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIP 222 (289)
T ss_dssp TSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCC
Confidence 2345678899999999987653221112122334444555665543 456655 4566678889999999998754
Q ss_pred C-eEEEEeC
Q 003275 158 S-YVWIATD 165 (834)
Q Consensus 158 ~-~vwi~~~ 165 (834)
+ ...+..|
T Consensus 223 ~di~vvg~D 231 (289)
T 2fep_A 223 EDLDIIGFD 231 (289)
T ss_dssp TTCEEEEEE
T ss_pred CCeEEEEEC
Confidence 4 3344433
No 117
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=95.76 E-value=0.086 Score=53.77 Aligned_cols=154 Identities=8% Similarity=-0.016 Sum_probs=94.2
Q ss_pred CCcEEEECCCC-hhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc-C-CeEEEEEE
Q 003275 3 NEVVAAIGPQS-SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY-G-WREVIAIF 79 (834)
Q Consensus 3 ~~V~aiiGp~~-S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~-~-W~~v~iI~ 79 (834)
++|.+||.... ..........+...++|+|......+. .+.+..+..++...+..+++.+... | -++|++|.
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~ 138 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVIS 138 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEE
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 45666665333 322223345566679999987543321 1234556777777788888887664 6 99999998
Q ss_pred EcC--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 80 VDD--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
.+. .......+.+.+++++.|..+... +....+..+....+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 139 FVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp SCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC
Confidence 543 344566788999999988754322 11122334444455555443 355544 35566788899999999986
Q ss_pred CCCeEEEEeC
Q 003275 156 AGSYVWIATD 165 (834)
Q Consensus 156 ~~~~vwi~~~ 165 (834)
.....+..|
T Consensus 216 -~di~vvg~d 224 (289)
T 3brs_A 216 -AKVKLVCID 224 (289)
T ss_dssp -TTSEEEEEE
T ss_pred -CCEEEEEEC
Confidence 334444444
No 118
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=95.75 E-value=0.1 Score=54.24 Aligned_cols=154 Identities=6% Similarity=-0.055 Sum_probs=90.7
Q ss_pred CCcEE-EECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH---cCCeEEEEE
Q 003275 3 NEVVA-AIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY---YGWREVIAI 78 (834)
Q Consensus 3 ~~V~a-iiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~---~~W~~v~iI 78 (834)
++|.+ |+.|..+.....+...+...+||+|.+....+ ... +..+....++...+..+++.+.. .|-+++++|
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~---~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i 134 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK---PEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFF 134 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCC---GGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCC---CCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 45655 45666555444555667778999999754321 111 12232255666677777887755 478999999
Q ss_pred EEc--CCcccchHHHHHHHHhcC--CcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhC
Q 003275 79 FVD--DDYGRNGISVLGDALSKK--RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSL 152 (834)
Q Consensus 79 ~~d--~~~g~~~~~~l~~~l~~~--g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~ 152 (834)
... +.......+.+.+++++. ++++.....- ..+..+....+.++.+. .+++|+ +.+...+..+++++++.
T Consensus 135 ~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~ 211 (316)
T 1tjy_A 135 YSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFG--YNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENL 211 (316)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHT
T ss_pred EcCCCChhHHHHHHHHHHHHHhhCCCcEEEEeccC--CCCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHc
Confidence 843 333455678888888765 5665543221 22334444455555443 344444 34556788899999999
Q ss_pred CCCCCCeEEEEeC
Q 003275 153 GMTAGSYVWIATD 165 (834)
Q Consensus 153 g~~~~~~vwi~~~ 165 (834)
| . .....+..|
T Consensus 212 G-~-~dv~VvG~D 222 (316)
T 1tjy_A 212 K-R-NNLAIVGFS 222 (316)
T ss_dssp T-C-CSCEEEEBC
T ss_pred C-C-CCEEEEEeC
Confidence 8 5 333344433
No 119
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=95.72 E-value=0.1 Score=54.31 Aligned_cols=154 Identities=13% Similarity=0.061 Sum_probs=93.6
Q ss_pred CCcEEEECCCChhh-HHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc--CCeEEEEEE
Q 003275 3 NEVVAAIGPQSSGI-AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIF 79 (834)
Q Consensus 3 ~~V~aiiGp~~S~~-~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~--~W~~v~iI~ 79 (834)
++|.+||....+.. .......+...++|+|.+....+. .+.+.....++...+..+++.+... |-++|++|.
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 135 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELT 135 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 46777765443332 223345556679999987543221 1233445567777778788887664 899999998
Q ss_pred EcC--CcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 80 VDD--DYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
.+. .......+.+.+++++. |+++.... ....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 136 ~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 136 GLSGSTPAMERHQGFMAAISKFPDIKLIDKA--DAAWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTCTEEEEEEEE--ECTTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCCEEEeee--cCCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 543 23456678899999998 88765321 112222333344444433 2466655 4555678888999999996
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
+.+...+..|
T Consensus 213 -p~dv~vig~D 222 (325)
T 2x7x_A 213 -EKEMIFVGID 222 (325)
T ss_dssp -TTSSEEEEEE
T ss_pred -CCCeEEEEEC
Confidence 3344444444
No 120
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.64 E-value=0.1 Score=56.57 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=61.7
Q ss_pred hhhhcCCCCeeEe-eCchhhHHHH---hhhcccc---cceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC
Q 003275 595 DSLISSTEPIGVQ-DGSFAWNYLV---DELKIAE---SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 667 (834)
Q Consensus 595 ~dL~~~~~~v~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 667 (834)
+||. |++|++. .++....+++ ...+++. -+++.+ +..+...+|.+ |++|+++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcCC
Confidence 6775 8899998 4665433332 2335543 355666 45788999999 899999988887766555522
Q ss_pred ccE-EEeCCcccccc-eEEEEcCC----Cc-----chHHHHHHHHhhhc
Q 003275 668 CEF-RTVGQEFTKSG-WGFAFQRD----SP-----LAIDLSTAILQLSE 705 (834)
Q Consensus 668 ~~l-~~v~~~~~~~~-~~~~~~k~----sp-----l~~~~~~~i~~l~e 705 (834)
... ....+.....+ ..++++++ .| +...+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 222 22223322223 46677654 44 44455566666655
No 121
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.59 E-value=0.12 Score=54.38 Aligned_cols=160 Identities=11% Similarity=-0.008 Sum_probs=96.6
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC-------CCCC-ceEEccCChHHHHHHHHHHHHHcC---
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-------LQYP-YFLRTTQSDYYQMHAVADLVEYYG--- 71 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~-------~~~p-~~~r~~ps~~~q~~aia~ll~~~~--- 71 (834)
++|.+||-.........+...+...++|+|......+.... ..++ ++-....++...+..+++.+...+
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~ 140 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPV 140 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhh
Confidence 35655554333344555667788889999998765443321 1122 256667778878888888876655
Q ss_pred ---C-eEEEEEEEcC--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEE-EEEeChhhHHH
Q 003275 72 ---W-REVIAIFVDD--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVF-VVHVNPDTGLT 144 (834)
Q Consensus 72 ---W-~~v~iI~~d~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi-vl~~~~~~~~~ 144 (834)
- +++++|..+. .......+.+.+++++.|. +.....+....+.......+.++.+..+++- |++++...+..
T Consensus 141 ~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g 219 (350)
T 3h75_A 141 PAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALG 219 (350)
T ss_dssp CSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHH
T ss_pred cCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHH
Confidence 3 8999887543 2344557889999999986 2222222222233444445555544334333 33456677888
Q ss_pred HHHHHHhCCCCCCCeEEEE
Q 003275 145 IFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 145 i~~~a~~~g~~~~~~vwi~ 163 (834)
+++++++.|+..++-+-++
T Consensus 220 ~~~al~~~G~~vP~di~vv 238 (350)
T 3h75_A 220 AMQAARELGRKPGTDLLFS 238 (350)
T ss_dssp HHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCCCCCeEEE
Confidence 9999999998755434333
No 122
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=95.42 E-value=0.11 Score=53.13 Aligned_cols=144 Identities=10% Similarity=0.008 Sum_probs=86.4
Q ss_pred CCcEEEECCC-ChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEE-ccCChHHHHHHHHHHHHHc------CCeE
Q 003275 3 NEVVAAIGPQ-SSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLR-TTQSDYYQMHAVADLVEYY------GWRE 74 (834)
Q Consensus 3 ~~V~aiiGp~-~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r-~~ps~~~q~~aia~ll~~~------~W~~ 74 (834)
++|.+||... ...........+...++|+|......+. . +.+.. +..++...+..+++.+... |-++
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~ 131 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKE 131 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccc
Confidence 4566666533 2222223344556689999987553321 1 11222 5566777778788887665 7889
Q ss_pred --EEEEEEcC--CcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHH
Q 003275 75 --VIAIFVDD--DYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFS 147 (834)
Q Consensus 75 --v~iI~~d~--~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~ 147 (834)
+++|..+. .......+.+.+++++. |+++.... ....+..+-...+.++.+ ..+++|+ +.+...+..+++
T Consensus 132 i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~ 208 (290)
T 2fn9_A 132 IPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ--SAEFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMK 208 (290)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHH
T ss_pred eeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEec--cCCCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHH
Confidence 66666432 34456688899999998 88765322 111222333344444433 2466655 455667888999
Q ss_pred HHHhCCC
Q 003275 148 VAKSLGM 154 (834)
Q Consensus 148 ~a~~~g~ 154 (834)
++++.|+
T Consensus 209 al~~~g~ 215 (290)
T 2fn9_A 209 ACEAAGR 215 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 9999997
No 123
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.41 E-value=0.01 Score=51.75 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=58.7
Q ss_pred HHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEE
Q 003275 507 LFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 584 (834)
Q Consensus 507 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 584 (834)
++.+.+++.+|+.. .++...++.+++|+++.++...| +-.|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~----~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGA----PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTS----TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecC----CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777643 23345679999999999998665 5589999999999999999999999999998877654
No 124
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.36 E-value=0.18 Score=51.86 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=94.6
Q ss_pred CcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc--CCeEEEEEEE
Q 003275 4 EVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFV 80 (834)
Q Consensus 4 ~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~--~W~~v~iI~~ 80 (834)
++.+|| .|..+.........+...++|+|......+.. +.+..+..++...+..+++.+... |-+++++|..
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~ 135 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITL 135 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 455544 44444433444556667899999876543321 123345677777888888888777 9999999985
Q ss_pred cCC-cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCC
Q 003275 81 DDD-YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAG 157 (834)
Q Consensus 81 d~~-~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~ 157 (834)
... ......+.+.+++++.|..+..........+.......+.++.+. .+++|+ +.+...+..+++++++.|+. .
T Consensus 136 ~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~ 213 (305)
T 3g1w_A 136 PNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-G 213 (305)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-T
T ss_pred CCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-C
Confidence 432 333457789999988866543332222222334444445554433 344433 45566788899999999986 4
Q ss_pred CeEEEEeC
Q 003275 158 SYVWIATD 165 (834)
Q Consensus 158 ~~vwi~~~ 165 (834)
....+..|
T Consensus 214 di~vig~d 221 (305)
T 3g1w_A 214 EIQIISFD 221 (305)
T ss_dssp TSEEEEES
T ss_pred CeEEEEeC
Confidence 44455544
No 125
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.30 E-value=0.12 Score=54.28 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=84.1
Q ss_pred cCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHhcCCcEE
Q 003275 26 ELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSKKRAKI 103 (834)
Q Consensus 26 ~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~~~g~~I 103 (834)
..++|+|......+. . ++......++..-+..+++.+...|-+++++|..+.. ......+.+.+++++.|+.+
T Consensus 136 ~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~ 210 (340)
T 1qpz_A 136 YRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 210 (340)
T ss_dssp TTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred hCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCC
Confidence 368999987543321 1 2223455666666777888887779999999975432 34566788999999999765
Q ss_pred EeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCCeE-EEEeC
Q 003275 104 SYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV-WIATD 165 (834)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v-wi~~~ 165 (834)
.....+....+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..++-+ .+..|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~D 274 (340)
T 1qpz_A 211 PESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp CGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred ChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEeEC
Confidence 4222222222333334455555443 4666554 556678889999999998755433 34333
No 126
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=95.28 E-value=0.063 Score=55.21 Aligned_cols=152 Identities=10% Similarity=0.024 Sum_probs=90.3
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCC--eEEEEEE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGW--REVIAIF 79 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W--~~v~iI~ 79 (834)
++|.+|| -|..+.........+...++|+|......+.. +.+-....++...+..+++.+...|- ++|++|.
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 142 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFR 142 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEE
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4555554 44444333444556667799999876533321 12344567777788888888888877 9999998
Q ss_pred Ec------CCcccchHHHHHHHHhcCCcE--EEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHH
Q 003275 80 VD------DDYGRNGISVLGDALSKKRAK--ISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVA 149 (834)
Q Consensus 80 ~d------~~~g~~~~~~l~~~l~~~g~~--I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a 149 (834)
.+ ........+.+.+++++.|.. +.....-.. +.......+.++.+ ..+++|+...+ . +..+++++
T Consensus 143 ~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~~~~d-~-a~g~~~al 218 (304)
T 3gbv_A 143 KIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHAD--LNIEDSRMLDDFFREHPDVKHGITFNS-K-VYIIGEYL 218 (304)
T ss_dssp EEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESS--CSSCHHHHHHHHHHHCTTCCEEEESSS-C-THHHHHHH
T ss_pred ecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCC--CHHHHHHHHHHHHHhCCCeEEEEEcCc-c-hHHHHHHH
Confidence 43 223456688999999988754 332211111 11122233333322 34677665444 3 78899999
Q ss_pred HhCCCCCCCeEEEEeC
Q 003275 150 KSLGMTAGSYVWIATD 165 (834)
Q Consensus 150 ~~~g~~~~~~vwi~~~ 165 (834)
++.|+ .....+..|
T Consensus 219 ~~~g~--~di~vig~d 232 (304)
T 3gbv_A 219 QQRRK--SDFSLIGYD 232 (304)
T ss_dssp HHTTC--CSCEEEEES
T ss_pred HHcCC--CCcEEEEeC
Confidence 99998 344444444
No 127
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=95.25 E-value=0.066 Score=54.84 Aligned_cols=154 Identities=10% Similarity=-0.003 Sum_probs=93.6
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+||-.........+...+...++|+|......+ . +.+.....++...+..+++.+...|-++|++|....
T Consensus 75 ~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~ 148 (293)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALP 148 (293)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECT
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4566665433222222233455667999998754322 1 123345567777777888888777999999998653
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
. ......+.+.+++++.|...... +....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 149 ~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 225 (293)
T 2iks_A 149 ELSVSFLREQGFRTAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPS 225 (293)
T ss_dssp TSHHHHHHHHHHHHHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCS
T ss_pred ccccHHHHHHHHHHHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 2 34566788999999998743322 11122334444555665444 356554 35566788899999999987544
Q ss_pred e-EEEEeC
Q 003275 159 Y-VWIATD 165 (834)
Q Consensus 159 ~-vwi~~~ 165 (834)
- ..+..|
T Consensus 226 di~vvg~d 233 (293)
T 2iks_A 226 DLAIATFG 233 (293)
T ss_dssp SCEEEEES
T ss_pred ceEEEEEC
Confidence 3 344444
No 128
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=95.20 E-value=0.16 Score=51.97 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=92.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||=...... ......+...++|+|......+... .. +..+..++..-+..+++.+...|-+++++|....
T Consensus 67 ~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 141 (295)
T 3hcw_A 67 RMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-HQ---FTHIDNDNILASENLTRHVIEQGVDELIFITEKG 141 (295)
T ss_dssp TCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-GG---SCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESS
T ss_pred CCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCCcccc-CC---ceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCc
Confidence 45655553222211 2334556678999998754332110 01 2234456666777788888778999999998654
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-----CCceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-----MESRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
. ......+.+.+++++.|+.+... .. ..+..+....+.++.+ ..+++|+ +.+...+..+++++++.|+.
T Consensus 142 ~~~~~~~R~~Gf~~al~~~g~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~ 217 (295)
T 3hcw_A 142 NFEVSKDRIQGFETVASQFNLDYQII-ET--SNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEE-EE--CSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred cchhHHHHHHHHHHHHHHcCCCeeEE-ec--cCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCC
Confidence 3 34556889999999999887521 11 1233333333444332 2466654 46666788999999999987
Q ss_pred CCCeEEEE
Q 003275 156 AGSYVWIA 163 (834)
Q Consensus 156 ~~~~vwi~ 163 (834)
.++-+-|+
T Consensus 218 vP~di~vi 225 (295)
T 3hcw_A 218 IPKDVMTA 225 (295)
T ss_dssp TTTTEEEE
T ss_pred CCCceEEE
Confidence 65444333
No 129
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.93 E-value=0.07 Score=54.27 Aligned_cols=101 Identities=16% Similarity=-0.051 Sum_probs=56.1
Q ss_pred hhhhcCCCCeeEe-eCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEec-hhhHHHHhhcCCcc-EE
Q 003275 595 DSLISSTEPIGVQ-DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE-LPYIELFMSKTNCE-FR 671 (834)
Q Consensus 595 ~dL~~~~~~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~-~~~~~~~~~~~~~~-l~ 671 (834)
+||. |++|++. .++.....++..+ ...+++. .+..+...++.+ |++||++.. .+... +... ... +.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l--~~~~~~~-~~~~~~~~al~~----G~vDa~~~~~~~~~~-~~~~-g~~~~~ 167 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAV--EDFEPVE-MPFDRIIQAVLD----EEVDAGLLIHEGQIT-YADY-GLKCVL 167 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHC--SSCEEEE-CCGGGHHHHHHT----TSSSEEEECSGGGGT-GGGG-TCEEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHh--ccCceEe-cCHHHHHHHHHc----CCCCEEEEechHHhH-HHhc-CCeEec
Confidence 6675 8999996 4444333343222 1224443 466788999998 899998754 34443 2222 221 11
Q ss_pred EeCCc----c-cccc-eEEEEcCC-Cc-chHHHHHHHHhhhcc
Q 003275 672 TVGQE----F-TKSG-WGFAFQRD-SP-LAIDLSTAILQLSEN 706 (834)
Q Consensus 672 ~v~~~----~-~~~~-~~~~~~k~-sp-l~~~~~~~i~~l~e~ 706 (834)
-.++. . ...+ .+++++++ .| +.+.|.+++.+..+-
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 168 DLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp EHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 11110 0 1112 35778887 56 777888777766544
No 130
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=94.89 E-value=0.22 Score=51.18 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=89.1
Q ss_pred CCcEEEECCCCh-hhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcC---CeEEEEE
Q 003275 3 NEVVAAIGPQSS-GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG---WREVIAI 78 (834)
Q Consensus 3 ~~V~aiiGp~~S-~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~---W~~v~iI 78 (834)
++|.+||-...+ .........+...++|+|......+... ..+++.....++...+..+++.+...| -++|++|
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i 134 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL 134 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 356666543332 2212333445667999998754332111 001344566677777777887876665 7999999
Q ss_pred EEcC--CcccchHHHHHHHHhcCCc-EEEeeecCCCCCChHHHHHHHHHhhc-----CCceEEEEEeChhhHHHHHHHHH
Q 003275 79 FVDD--DYGRNGISVLGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANL-----MESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 79 ~~d~--~~g~~~~~~l~~~l~~~g~-~I~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
.... .......+.+.+++++.|. ++... .....+..+-...+.++.+ ..+++|+. .+...+..++++++
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~ 211 (306)
T 2vk2_A 135 QGTVGASVAIDRKKGFAEAIKNAPNIKIIRS--QSGDFTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIK 211 (306)
T ss_dssp ECSTTCHHHHHHHHHHHHHTTTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred EcCCCChhHHHHHHHHHHHHhhCCCeEEEEe--ccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHH
Confidence 8643 2345567889999999885 33321 1111222333334444433 34666544 55667888999999
Q ss_pred hCCCCCCCeE
Q 003275 151 SLGMTAGSYV 160 (834)
Q Consensus 151 ~~g~~~~~~v 160 (834)
+.|+..++-+
T Consensus 212 ~~G~~vP~di 221 (306)
T 2vk2_A 212 EAGLKPGKDI 221 (306)
T ss_dssp HTTCCBTTTB
T ss_pred HcCCCCCCCe
Confidence 9998755433
No 131
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=94.88 E-value=0.27 Score=50.09 Aligned_cols=144 Identities=7% Similarity=-0.022 Sum_probs=90.1
Q ss_pred CcEEEEC-CCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH-c-CCe-----EE
Q 003275 4 EVVAAIG-PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-Y-GWR-----EV 75 (834)
Q Consensus 4 ~V~aiiG-p~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~-~-~W~-----~v 75 (834)
++.+||- |............+...++|+|......+. .+.+..+..++...+..+++.+.. . |-+ ++
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i 138 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRI 138 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEE
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceE
Confidence 4544443 333333334445666779999987654332 123445667777778888888755 4 656 99
Q ss_pred EEEEEcC--CcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHH
Q 003275 76 IAIFVDD--DYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 76 ~iI~~d~--~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~ 150 (834)
++|..+. .......+.+.+++++. |+++.....- ..+..+....+.++.+. .+++| ++.+...+..++++++
T Consensus 139 ~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~ 215 (293)
T 3l6u_A 139 VEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSG--NYDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALK 215 (293)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEEC--TTCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccC--CCCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHH
Confidence 9998543 34445688999999999 9887654222 22334444455555443 34554 4456667888999999
Q ss_pred hCCCC
Q 003275 151 SLGMT 155 (834)
Q Consensus 151 ~~g~~ 155 (834)
+.|+.
T Consensus 216 ~~g~~ 220 (293)
T 3l6u_A 216 KAKIS 220 (293)
T ss_dssp HTTCC
T ss_pred hCCCC
Confidence 99975
No 132
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.87 E-value=0.18 Score=51.44 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=94.9
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
..+|.+||-.........+ ..+.. ++|+|......+ . +.+-....++..-+..+++.+...|-++|++|...
T Consensus 64 ~~~vdgiIi~~~~~~~~~~-~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 64 RERCEAAILLGTRFDTDEL-GALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA 135 (289)
T ss_dssp TTTEEEEEEETCCCCHHHH-HHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred hCCCCEEEEECCCCCHHHH-HHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 3467666643322222333 33445 999998754332 1 22334566777778888888888899999999865
Q ss_pred CC-cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 82 DD-YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 82 ~~-~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
.. ......+.+.+++++.|+.+... .+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 136 ~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 213 (289)
T 3k9c_A 136 DAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPA 213 (289)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 43 34456789999999998763221 222223334444555555543 455544 45667788899999999987554
Q ss_pred eE-EEEeC
Q 003275 159 YV-WIATD 165 (834)
Q Consensus 159 ~v-wi~~~ 165 (834)
-+ .+..|
T Consensus 214 di~vig~D 221 (289)
T 3k9c_A 214 DISVVGYD 221 (289)
T ss_dssp TCEEEEEE
T ss_pred ceEEEEEC
Confidence 44 34433
No 133
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=94.86 E-value=0.16 Score=51.04 Aligned_cols=153 Identities=9% Similarity=-0.026 Sum_probs=93.9
Q ss_pred CcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC
Q 003275 4 EVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD 83 (834)
Q Consensus 4 ~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~ 83 (834)
++.+||-.............+...++|+|......+ ... +-....++...+..+++.+...|-++++++..+..
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 131 (272)
T 3o74_A 58 RCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLD---PAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPE 131 (272)
T ss_dssp TCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCC---TTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTT
T ss_pred CCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCC---ccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 455544322221123334556677999998754332 112 23355677777888888888889999999986543
Q ss_pred --cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC---CceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 84 --YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM---ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 84 --~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
......+.+.+++++.|+++.....-. .+..+....+.++.+. .+++|+. .+...+..+++++++.|+.+.+
T Consensus 132 ~~~~~~R~~gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~d 208 (272)
T 3o74_A 132 LSVSQARAGGFDEALQGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQ 208 (272)
T ss_dssp SHHHHHHHHHHHHHTTTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCC
T ss_pred CccHHHHHHHHHHHHHHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccc
Confidence 345668899999999998765433222 2333434444444332 3666544 5667788899999999982233
Q ss_pred eEEEEeC
Q 003275 159 YVWIATD 165 (834)
Q Consensus 159 ~vwi~~~ 165 (834)
...+..|
T Consensus 209 i~vvg~d 215 (272)
T 3o74_A 209 LQLGTFG 215 (272)
T ss_dssp CEEEEES
T ss_pred eEEEEeC
Confidence 4444444
No 134
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.86 E-value=0.44 Score=49.11 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=40.5
Q ss_pred CCCChhhhhcCCCCeeE-eeCchhhHHH---Hhhhcccccce--EecCCHHHHHHHHhcCCCCCceEEEEec
Q 003275 590 QIEGIDSLISSTEPIGV-QDGSFAWNYL---VDELKIAESRL--VKLKNMEEYSIALARGPKGGGVAAIVDE 655 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~-~~~s~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~a~~~~ 655 (834)
++++++||. ++++++ ..|+.....+ .+..+.....+ ..+.+..+.+.++.. |++|+.+..
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~ 187 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 187 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEc
Confidence 678999998 677877 4566433222 23345543333 356678899999998 899998865
No 135
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=94.83 E-value=0.14 Score=52.52 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=88.6
Q ss_pred HHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHh
Q 003275 20 ISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALS 97 (834)
Q Consensus 20 ~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~ 97 (834)
....+...++|+|......+ ... +-....++...+..+++.+...|-+++++|..... ......+.+.++++
T Consensus 80 ~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~ 153 (294)
T 3qk7_A 80 RLQYLQKQNFPFLALGRSHL---PKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMS 153 (294)
T ss_dssp HHHHHHHTTCCEEEESCCCC---SSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCC---CCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHH
Confidence 34556678999998754321 122 23455677777888888888889999999986543 34456889999999
Q ss_pred cCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCCe-EEEEeC
Q 003275 98 KKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY-VWIATD 165 (834)
Q Consensus 98 ~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~-vwi~~~ 165 (834)
+.|+.+..........+..+-...+.++.+. .+++|+ +++...+..+++++++.|+..++- ..+..|
T Consensus 154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 154 EAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp TTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 9987643211111112233334444555433 456654 456677888999999999876544 444444
No 136
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=94.79 E-value=0.12 Score=53.04 Aligned_cols=147 Identities=8% Similarity=-0.098 Sum_probs=91.8
Q ss_pred CcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcC-----CeEEEE
Q 003275 4 EVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG-----WREVIA 77 (834)
Q Consensus 4 ~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~-----W~~v~i 77 (834)
++.+|| .|..+.........+. .++|+|......+.......+.+.....++...+..+++.+...| -++|++
T Consensus 63 ~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~ 141 (304)
T 3o1i_D 63 GANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIAL 141 (304)
T ss_dssp TCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 454544 5544442223334455 899999875443311111224556677888888888888888888 899999
Q ss_pred EEEcC--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhh-cCCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 78 IFVDD--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN-LMESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 78 I~~d~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~-~~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
|.... .......+.+.+++++.|+++.... ....+.......+.++. ...+++ | +++...+..+++++++.|+
T Consensus 142 i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~ 217 (304)
T 3o1i_D 142 LLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADK 217 (304)
T ss_dssp ECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTC
T ss_pred EECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCC
Confidence 97543 3455668999999999998876533 22223333333333332 335677 4 4577888899999999997
Q ss_pred C
Q 003275 155 T 155 (834)
Q Consensus 155 ~ 155 (834)
.
T Consensus 218 ~ 218 (304)
T 3o1i_D 218 T 218 (304)
T ss_dssp G
T ss_pred C
Confidence 5
No 137
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=94.78 E-value=0.024 Score=50.83 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=56.4
Q ss_pred HHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEE
Q 003275 508 FVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILT 583 (834)
Q Consensus 508 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 583 (834)
+.+.+++.+++.. .++...++..++||++.++.-.| .-.|.+..+|++.++|.++++.+.+...+.+++.+.
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666543 23345678999999999997664 568999999999999999999999999999887653
No 138
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=94.75 E-value=0.036 Score=58.04 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=89.0
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
++|.+|| ....... +.+...++|+|......+. .++ ....++...+..+++.+...|-++|++|..+.
T Consensus 115 ~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 182 (330)
T 3ctp_A 115 HRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPE 182 (330)
T ss_dssp TTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCT
T ss_pred CCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 4677777 3322211 3345678999987553321 222 34456666677788888778999999998653
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
. ......+.+.+++++.|+.+. ...+....+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..++-
T Consensus 183 ~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~d 260 (330)
T 3ctp_A 183 VFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQE 260 (330)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred cCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCC
Confidence 3 345667889999999998654 2222212121221222333333 24666554 45667888999999999876544
Q ss_pred EEEE
Q 003275 160 VWIA 163 (834)
Q Consensus 160 vwi~ 163 (834)
+-++
T Consensus 261 isvv 264 (330)
T 3ctp_A 261 VQII 264 (330)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4443
No 139
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=94.75 E-value=0.016 Score=52.86 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=59.8
Q ss_pred HHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEE
Q 003275 507 LFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 584 (834)
Q Consensus 507 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 584 (834)
++.+.+++.+|+.. .++...++..++||++.++...| .-.|.+..+|++.++|.++++.+.+..++.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~----~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGA----PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTS----SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC----CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777643 23345579999999999998665 5589999999999999999999999999999887765
Q ss_pred ee
Q 003275 585 QQ 586 (834)
Q Consensus 585 ~~ 586 (834)
..
T Consensus 140 ~~ 141 (155)
T 2a9h_A 140 RE 141 (155)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 140
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=94.61 E-value=0.76 Score=46.42 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=89.1
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc-C-CeEEEEEE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY-G-WREVIAIF 79 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~-~-W~~v~iI~ 79 (834)
.+|.+|| .|..+.........+...++|+|......+ .. +.+.....++...+..+++.+... | -+++++|.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~ 130 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELE 130 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 3566654 344333322333456677999998754321 11 122334556666677777877555 5 89999998
Q ss_pred EcCC--cccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 80 VDDD--YGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 80 ~d~~--~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
.... ......+.+.+++++. |+++.....- ..+..+-...+.++.+. .+++| ++.+...+..+++++++.|+
T Consensus 131 g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 131 GIPGASAARDRGKGFDEAIAKYPDIKIVAKQAA--DFDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCCEEEeeccC--CCCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC
Confidence 5432 2345578899999998 8876532211 12333334444554433 34443 44566678899999999997
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
.+...+..|
T Consensus 208 --~di~viG~D 216 (283)
T 2ioy_A 208 --QGIIVVGFD 216 (283)
T ss_dssp --CCCEEEEEE
T ss_pred --CCcEEEEeC
Confidence 344444433
No 141
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.52 E-value=0.15 Score=52.40 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=90.1
Q ss_pred CCcEEEECCCChhhHH-HHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAIGPQSSGIAH-VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~-~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
.+|.+||-........ .+..+. . ++|+|......+. ..+ ....++..-+..+++.+...|-+++++|..+
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~-~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 140 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVL-E-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGT 140 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHH-T-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCCcEEEEecCCCCcHHHHHHHh-C-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4565555432222222 344444 4 9999987654432 223 2455666677778888888899999999854
Q ss_pred CC--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHh-----hcC--CceEEEEEeChhhHHHHHHHHHhC
Q 003275 82 DD--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA-----NLM--ESRVFVVHVNPDTGLTIFSVAKSL 152 (834)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~vivl~~~~~~~~~i~~~a~~~ 152 (834)
.. ......+.+.+++++.|+.+..........+...-...+.++ .+. .+++|+ +.+...+..+++++++.
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~ 219 (303)
T 3kke_A 141 AIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRL 219 (303)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHc
Confidence 32 345568899999999997653211121122334444555665 443 355544 45666788899999999
Q ss_pred CCCCCCe
Q 003275 153 GMTAGSY 159 (834)
Q Consensus 153 g~~~~~~ 159 (834)
|+..++-
T Consensus 220 G~~vP~d 226 (303)
T 3kke_A 220 GLRVPED 226 (303)
T ss_dssp TCCTTTT
T ss_pred CCCCCCc
Confidence 9875543
No 142
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=94.37 E-value=0.12 Score=54.26 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC---CcccchHHHHHHH
Q 003275 19 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD---DYGRNGISVLGDA 95 (834)
Q Consensus 19 ~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~---~~g~~~~~~l~~~ 95 (834)
.....+...++|+|......+ .+.......++..-+..+++.+...|-+++++|.... .......+.+.++
T Consensus 138 ~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~a 211 (344)
T 3kjx_A 138 AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEV 211 (344)
T ss_dssp HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHH
Confidence 344556678999998742111 1222345567777778888888778999999998653 2344567889999
Q ss_pred HhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 96 LSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 96 l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
+++.|+.+.....+....+...-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 212 LGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999865433333222232333333444332 2466655 4566778889999999998765544444
No 143
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=94.31 E-value=0.08 Score=54.14 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=93.0
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-..... .......+...++|+|......+ . +.+-....++...+..+++.+...|-+++++|..+.
T Consensus 63 ~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 135 (291)
T 3egc_A 63 RRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSA 135 (291)
T ss_dssp TTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred CCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 3555555332222 33444566778999998755432 1 223445667777788888888888999999998553
Q ss_pred --CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 --DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
.......+.+.+++++.|+.+..........+..+....+.++.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 136 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 214 (291)
T 3egc_A 136 GLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGP 214 (291)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 244556788999999998764322111111111122233333332 3456655 46667788899999999987554
Q ss_pred eE-EEEeC
Q 003275 159 YV-WIATD 165 (834)
Q Consensus 159 ~v-wi~~~ 165 (834)
-+ .+..|
T Consensus 215 di~vvg~d 222 (291)
T 3egc_A 215 DVEIVSFD 222 (291)
T ss_dssp TBEEEEES
T ss_pred ceEEEEec
Confidence 34 34433
No 144
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.18 E-value=1.3 Score=43.18 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=58.5
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+... . ...+-..++..+.+..+ .+.+++.. .+...++++|.+|++|++++.
T Consensus 18 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTDY--A------------MQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECSH--H------------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEechH--H------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 46899999321 1 12455788888888875 35566665 567889999999999999874
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCC
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... ...+ -+.++....+++++++..
T Consensus 76 ~~~~---~~~~-~~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 PTGP---VEPL-RSEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CSSC---CTTE-EEEEEECCCEEEEEETTS
T ss_pred CCCC---Cccc-eeEEeecccEEEEEeCCC
Confidence 3322 2222 246778889999998776
No 145
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=94.17 E-value=0.34 Score=48.89 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=91.5
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-..... ......+...++|+|......+ ....+ ....++..-+..+++.+...|-+++++|..+.
T Consensus 62 ~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 62 RGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL 133 (276)
T ss_dssp TTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred CCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 3555555333333 4455566778999998754332 11222 34567777788888888888999999998765
Q ss_pred C-c--ccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHhCCCCCCC
Q 003275 83 D-Y--GRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 83 ~-~--g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~ 158 (834)
. . .....+.+.+++++.+. +... ..............+.++. ..+++|+ +++...+..+++++++.|+..++
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 209 (276)
T 3jy6_A 134 ELSRTRQERYRGILAAAQDVDV-LEVS--ESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQ 209 (276)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEE-EEEC--SSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSS
T ss_pred CCCchHHHHHHHHHHHHHhCCc-EEEe--ccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCC
Confidence 3 2 24567888888888754 2211 1100122344444455543 3455544 46677888899999999987655
Q ss_pred eEEEE
Q 003275 159 YVWIA 163 (834)
Q Consensus 159 ~vwi~ 163 (834)
-+-|+
T Consensus 210 di~vi 214 (276)
T 3jy6_A 210 TVTAT 214 (276)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 45444
No 146
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=93.87 E-value=0.45 Score=46.87 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCC-------CChHHHHHHHHH-h-hcCCc
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG-------ASRSAINSLLVG-A-NLMES 130 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~-------~~~~~~~~~l~~-l-~~~~~ 130 (834)
..++++.++..|-++|+++.. |.....+.+.+.+++.|++|......... .+...+...+.+ + ...++
T Consensus 105 ~~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 467788888899999999984 77777888999999999998765443211 234567777888 7 67788
Q ss_pred eEEEEEeChhhHH
Q 003275 131 RVFVVHVNPDTGL 143 (834)
Q Consensus 131 ~vivl~~~~~~~~ 143 (834)
|.||+.|..-...
T Consensus 182 daivL~CT~l~~l 194 (240)
T 3ixl_A 182 DGILLSSGGLLTL 194 (240)
T ss_dssp SEEEEECTTSCCT
T ss_pred CEEEEeCCCCchh
Confidence 9999988654333
No 147
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=93.86 E-value=0.21 Score=52.34 Aligned_cols=149 Identities=8% Similarity=-0.003 Sum_probs=86.6
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccC-CCCCCCCCCCceEEccCChHHHHHHHHHHHHH-cC-CeEEEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGAT-DPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YG-WREVIAIF 79 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at-~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~-~~-W~~v~iI~ 79 (834)
.+|.+||-+..+.........+...++|+|.+... .|.......+.+.....++...+..+++.+.. .| -++|++|.
T Consensus 103 ~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~ 182 (342)
T 1jx6_A 103 SKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLY 182 (342)
T ss_dssp TTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred cCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 45667666544432223334455668999876332 22111011223344667777777888888766 46 99999997
Q ss_pred EcCC-cccchHHHHHHHHhcCCc-EEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 80 VDDD-YGRNGISVLGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 80 ~d~~-~g~~~~~~l~~~l~~~g~-~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
.+.. ......+.+.+++++.|. .+... +....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 183 ~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 183 FSEGYISDVRGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred cCCcchhhHHHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 5433 334557788999998876 33222 2222233333344444433 2456655 4556678889999999997
No 148
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=93.84 E-value=3.5 Score=39.77 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=57.1
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||+... + ...+-..++..+.+..+ .+++++.. .+...++++|.+|++|+++...
T Consensus 30 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTPT--F------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECHH--H------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeechh--h------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 5799998311 1 12445788888888886 46677765 5578899999999999998643
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... ..+. +.++....+++++++..
T Consensus 88 ~~~~---~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 PVHS---PELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp SCCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred CCCc---ccce-eeeeccCcEEEEEcCCC
Confidence 2211 2222 36788888999988765
No 149
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=93.76 E-value=0.57 Score=47.79 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=87.0
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC------CCCCceEEccCChHHHHHHHHHHHHHc--CCe
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS------LQYPYFLRTTQSDYYQMHAVADLVEYY--GWR 73 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~------~~~p~~~r~~ps~~~q~~aia~ll~~~--~W~ 73 (834)
+++|.+||... +.....+.. ...++|+|.....+|.... ...+.+.... +..-+...++++... |-|
T Consensus 60 ~~~vDgII~~~-~~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~ 134 (295)
T 3lft_A 60 ANGNDLVVGIA-TPAAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVK 134 (295)
T ss_dssp TSSCSEEEEES-HHHHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCC
T ss_pred hcCCCEEEECC-cHHHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCc
Confidence 45677777653 222333332 2478999986655543221 0112343333 222345566777666 889
Q ss_pred EEEEEEEcCC-cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhC
Q 003275 74 EVIAIFVDDD-YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSL 152 (834)
Q Consensus 74 ~v~iI~~d~~-~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~ 152 (834)
++++|+.+.. .+....+.+++++++.|+++....... ..+....+.++.. ++++|++..+ ..+...++++.+.
T Consensus 135 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~----~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~ 208 (295)
T 3lft_A 135 TIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPS----TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSS 208 (295)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESS----GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHH
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCC----HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHH
Confidence 9999997654 345667899999999999886543322 3566777777764 6788776543 4455566677776
Q ss_pred CC
Q 003275 153 GM 154 (834)
Q Consensus 153 g~ 154 (834)
+.
T Consensus 209 ~~ 210 (295)
T 3lft_A 209 NQ 210 (295)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 150
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=93.69 E-value=1 Score=45.06 Aligned_cols=154 Identities=10% Similarity=0.089 Sum_probs=87.5
Q ss_pred CCCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHc--CCeEEEEE
Q 003275 2 ENEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAI 78 (834)
Q Consensus 2 ~~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~--~W~~v~iI 78 (834)
+.+|.+|| -|..+.........+...++|+|......+ ... ..-....++..-+..+++.+... |-+++++|
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~---~~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i 129 (271)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT---KGE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 129 (271)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SSC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCC---CCc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 34677765 333333222233445667999998754322 111 11234456666667777776554 56899999
Q ss_pred EEcCC--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 79 FVDDD--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 79 ~~d~~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
..... ......+.+.+++++.|+.+.... ....+...-...+.++.+ ..+++ |++.+...+..+++++++.|+
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 130 QGIAGTSAARERGEGFQQAVAAHKFNVLASQ--PADFDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHTCEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC
T ss_pred ECCCCCccHhHHHHHHHHHHhcCCCEEEEec--CCCCCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC
Confidence 85432 234557889999999998765322 111222333333444332 23555 444566778899999999997
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
.+...+..|
T Consensus 207 --~dv~vvGfD 215 (271)
T 2dri_A 207 --SDVMVVGFD 215 (271)
T ss_dssp --CSCEEEEEE
T ss_pred --CCcEEEEec
Confidence 344444433
No 151
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=93.61 E-value=0.32 Score=51.10 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=87.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-....... .....+...++|+|......+. ....+ ....++..-+..+++.+...|-++|++|..+.
T Consensus 121 ~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 194 (348)
T 3bil_A 121 HGVDGIICVPNEECA-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPM 194 (348)
T ss_dssp TTCSCEEECCCGGGH-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 356555543332222 3334455679999987543321 01222 23455556667777888778999999998543
Q ss_pred C--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeE
Q 003275 83 D--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 160 (834)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v 160 (834)
. ......+.+.+++++.|+.... .+....+..+-...+.++.+..+ ..|++.+...+..+++++++.|+..++-+
T Consensus 195 ~~~~~~~R~~Gf~~al~~~g~~~~~--v~~~~~~~~~~~~~~~~ll~~~~-~ai~~~nD~~A~g~~~al~~~G~~vP~di 271 (348)
T 3bil_A 195 DTSTGRERLEDFKAACANSKIGEQL--VFLGGYEQSVGFEGATKLLDQGA-KTLFAGDSMMTIGVIEACHKAGLVIGKDV 271 (348)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCE--EECCCSSHHHHHHHHHHHHHTTC-SEEEESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred CCccHHHHHHHHHHHHHHcCcCccE--EEcCCCCHHHHHHHHHHHHcCCC-CEEEEcChHHHHHHHHHHHHcCCCCCCCe
Confidence 2 3455678899999999873211 11111222333344455443332 23445566778899999999998755433
Q ss_pred -EEEeC
Q 003275 161 -WIATD 165 (834)
Q Consensus 161 -wi~~~ 165 (834)
.+..|
T Consensus 272 svvG~D 277 (348)
T 3bil_A 272 SVIGFD 277 (348)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 33434
No 152
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=93.30 E-value=0.065 Score=47.71 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=47.4
Q ss_pred cchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEE
Q 003275 530 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILT 583 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 583 (834)
.++..++||++.++...| .-.|.+..+|++.++|+++++.+.+...+.+++.+.
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998665 558999999999999999999999999998887764
No 153
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=93.25 E-value=0.49 Score=46.96 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=82.5
Q ss_pred hccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc--C-CcccchHHHHHHHHhcCC
Q 003275 24 VNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD--D-DYGRNGISVLGDALSKKR 100 (834)
Q Consensus 24 ~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d--~-~~g~~~~~~l~~~l~~~g 100 (834)
....++|+|...... +.+-....++...+..+++.+...|-++|++|..+ + .......+.+.+++++.|
T Consensus 75 l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g 146 (255)
T 1byk_A 75 LAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHK 146 (255)
T ss_dssp SGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTT
T ss_pred HHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcC
Confidence 445678998764321 12334556677777888888877899999999854 2 344566889999999998
Q ss_pred cEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 003275 101 AKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 165 (834)
Q Consensus 101 ~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~~~ 165 (834)
+.+.. +....+..+-...+.++.+..+++|+ +.+...+..+++++++.|+ .+...+..|
T Consensus 147 ~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 147 LHPVA---ALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp CCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred CCcce---eecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 75431 22222333344445555545567655 4566678889999999997 344444443
No 154
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.25 E-value=0.55 Score=49.43 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=86.6
Q ss_pred HHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCc---ccchHHHHHHHH
Q 003275 20 ISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDY---GRNGISVLGDAL 96 (834)
Q Consensus 20 ~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~---g~~~~~~l~~~l 96 (834)
....+...++|+|...... .. +.......++..-+..+++.+...|-+++++|..+... .....+.+.+++
T Consensus 141 ~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al 214 (355)
T 3e3m_A 141 TIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAM 214 (355)
T ss_dssp HHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHH
Confidence 3455667899999863221 11 22235566777777888888888899999999875432 356688999999
Q ss_pred hcCCcEEEeeecC-CCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 97 SKKRAKISYKAPF-SPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 97 ~~~g~~I~~~~~~-~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
++.|+.+.....+ ....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 215 REAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9998864321111 111222333334444433 3466654 4566778889999999998765444443
No 155
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=93.18 E-value=2 Score=43.57 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=54.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|+||++.. + ...+-.+++..+.+..+ .+.+++.. ++..+++.+|.+|++|+++...
T Consensus 95 g~l~i~~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 152 (306)
T 3fzv_A 95 GQIDIGCFET--V------------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLYE 152 (306)
T ss_dssp EEEEEEEEGG--G------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEECS
T ss_pred ceEEEEechh--h------------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEec
Confidence 5789998321 1 12455778888888876 45566654 5688999999999999998643
Q ss_pred eeecCceeeEEecceee-eceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYM-ESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~-~~~~~~vv~~~~ 482 (834)
..... .+ -..|+. ...++++++...
T Consensus 153 ~~~~~---~l-~~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 153 HDLDS---TI-ETEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SSCCT---TE-EEEESSCCBCCEEEEETTC
T ss_pred ccccc---cc-ceeeeeeccccEEEecCCC
Confidence 22222 12 234555 666777777665
No 156
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=93.15 E-value=0.31 Score=46.92 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=58.1
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||+... ....+-.+++..+.+..+ .+++++.. ++...++++|.+|++|+++...
T Consensus 5 g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 5 GPLHIGLIPT--------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred eEEEEEeccc--------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecC
Confidence 5789998321 113556788888888886 46677664 5688999999999999998643
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... ..+. +.|+....+++++++..
T Consensus 63 ~~~~---~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 63 VKES---EAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp CGGG---TTSE-EEEEEEEEEEEEEETTS
T ss_pred CCCC---CCcc-eeeeecccEEEEEcCCC
Confidence 2211 1222 35788888999988765
No 157
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=93.11 E-value=0.53 Score=50.79 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=95.3
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 82 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~ 82 (834)
.+|.+||-.. ........+...++|+|......+... ..+.+-.+..++..-+..+++.+...|-+++++|....
T Consensus 75 ~~vDGiIi~~---~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~ 149 (412)
T 4fe7_A 75 WLGDGVIADF---DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPE 149 (412)
T ss_dssp CCCSEEEEET---TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred CCCCEEEEec---CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccc
Confidence 3566666422 223345566778999998765433211 11234455667777788888888888999999998654
Q ss_pred Cc----ccchHHHHHHHHhcCCcEEEeeecCCC-CCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCC
Q 003275 83 DY----GRNGISVLGDALSKKRAKISYKAPFSP-GASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 83 ~~----g~~~~~~l~~~l~~~g~~I~~~~~~~~-~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~ 155 (834)
.. .....+.+.+++++.|+.......... ..+..+....+.++.+ ..+++|+ +.+...+..+++++++.|+.
T Consensus 150 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~ 228 (412)
T 4fe7_A 150 SSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIP 228 (412)
T ss_dssp TSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCC
T ss_pred cccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCC
Confidence 43 456688999999999875432211111 1122233333333322 3456544 45667788899999999987
Q ss_pred CCCe-EEEEeC
Q 003275 156 AGSY-VWIATD 165 (834)
Q Consensus 156 ~~~~-vwi~~~ 165 (834)
.++- ..+..|
T Consensus 229 vP~disvig~D 239 (412)
T 4fe7_A 229 VPEKLCVIGID 239 (412)
T ss_dssp TTTTSEEEESS
T ss_pred CCceEEEEeec
Confidence 5544 444444
No 158
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=93.07 E-value=0.38 Score=49.34 Aligned_cols=138 Identities=10% Similarity=0.100 Sum_probs=82.0
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC------CCCCceEEccCChHHHHHHHHHHHHHc--CCeE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS------LQYPYFLRTTQSDYYQMHAVADLVEYY--GWRE 74 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~------~~~p~~~r~~ps~~~q~~aia~ll~~~--~W~~ 74 (834)
++|.+||.... .....+.. ...++|+|.....+|.... ...+.+....- ...+...++++... |-|+
T Consensus 68 ~~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~Pg~~~ 142 (302)
T 2qh8_A 68 ENPDVLVGIAT-PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVKS 142 (302)
T ss_dssp TCCSEEEEESH-HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCCE
T ss_pred CCCCEEEECCh-HHHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCcE
Confidence 46777776532 22333333 2679999987655543211 11234444432 22245556777666 9999
Q ss_pred EEEEEEcCC-cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHh
Q 003275 75 VIAIFVDDD-YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKS 151 (834)
Q Consensus 75 v~iI~~d~~-~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~ 151 (834)
+++|+...+ .+....+.+++++++.|+++...... +..+....+.++.. ++++|++..+ ..+...++++.+
T Consensus 143 I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~ 214 (302)
T 2qh8_A 143 IGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYALID-NTVASAIEGMIV 214 (302)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEECSC-HHHHTTHHHHHH
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEECCc-HhHHHHHHHHHH
Confidence 999996543 35667889999999999988654332 23566777777763 6788776543 333333333333
No 159
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=93.00 E-value=0.7 Score=47.50 Aligned_cols=145 Identities=8% Similarity=-0.064 Sum_probs=87.7
Q ss_pred CcEEEEC-CCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHH-HcCCeEEEEEEEc
Q 003275 4 EVVAAIG-PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVE-YYGWREVIAIFVD 81 (834)
Q Consensus 4 ~V~aiiG-p~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~-~~~W~~v~iI~~d 81 (834)
+|.+||- |............+...++|+|......+. ... ......++...+..+++.+. ..|-+++++|..+
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~ 132 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGS 132 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECC
Confidence 4544443 333333334456667789999987654322 122 13445577777888888876 8999999999754
Q ss_pred CC--cccchHHHHHHHHhcC----CcEEEeeecCCCCCChHHHHHHHHHhhc---CCceEEEEEeChhhHHHHHHHHHhC
Q 003275 82 DD--YGRNGISVLGDALSKK----RAKISYKAPFSPGASRSAINSLLVGANL---MESRVFVVHVNPDTGLTIFSVAKSL 152 (834)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~----g~~I~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vivl~~~~~~~~~i~~~a~~~ 152 (834)
.. ......+.+.+++++. ++.+..... ....+.......+.++.+ ..+++|+ +.+...+..+++++++.
T Consensus 133 ~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~ 210 (313)
T 3m9w_A 133 PVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQ 210 (313)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHc
Confidence 32 3344578888888887 666654332 111122333344444433 3455544 44666788899999999
Q ss_pred CCC
Q 003275 153 GMT 155 (834)
Q Consensus 153 g~~ 155 (834)
|+.
T Consensus 211 G~~ 213 (313)
T 3m9w_A 211 GLS 213 (313)
T ss_dssp TCT
T ss_pred CCC
Confidence 985
No 160
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=92.96 E-value=3.4 Score=38.85 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=56.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||++.. . ...+-.+++..+.+..+ .+.+++.. .+...+..+|.+|++|+++...
T Consensus 5 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 5 GPIAVGCYPA--L------------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp EEEEEEECGG--G------------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred eeEEEeechh--h------------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEec
Confidence 5789998321 1 12445788899988886 45666664 5678899999999999998643
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... ..+. +.++....++++++...
T Consensus 63 ~~~~---~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 63 LDLS---PEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp SSCC---TTEE-EEEEEEECCEEEEETTC
T ss_pred CCCC---CCce-EEEeecCceEEEEeCCC
Confidence 2211 1222 35777888888888655
No 161
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=92.53 E-value=0.53 Score=51.01 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=61.6
Q ss_pred hhhh-hcCCC--CeeEe-eCchhhHHHH---hhhcccc---cceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHh
Q 003275 594 IDSL-ISSTE--PIGVQ-DGSFAWNYLV---DELKIAE---SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFM 663 (834)
Q Consensus 594 ~~dL-~~~~~--~v~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 663 (834)
++|| .+.|+ +|++. .++....+++ ...+++. -+++.+ ...+...+|.+ |++|+++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 5888 64466 89997 5665433322 2345543 345555 67889999999 89999998888876655
Q ss_pred hcCCccEEEe--CCccccc-ceEEEEcCC----Cc-----chHHHHHHHHhhhc
Q 003275 664 SKTNCEFRTV--GQEFTKS-GWGFAFQRD----SP-----LAIDLSTAILQLSE 705 (834)
Q Consensus 664 ~~~~~~l~~v--~~~~~~~-~~~~~~~k~----sp-----l~~~~~~~i~~l~e 705 (834)
.+ .....++ ++..... ...+++++. .| +...+.++...+.+
T Consensus 228 ~~-g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TE-NIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HT-TSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HC-CCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 54 3222222 2222222 245666653 34 44445555555554
No 162
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=92.47 E-value=3.2 Score=39.64 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+.. . ....+-..++..+.+..+ .+++++.. ++...++++|.+|++|++++.
T Consensus 7 ~g~l~Ig~~~---~-----------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD---I-----------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH---H-----------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH---H-----------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4688999821 1 112455788888888886 45677664 557889999999999999864
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCC
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
... ....+.+ .|+....++++++...
T Consensus 65 ~~~---~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 LPE---LQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp CTT---CCTTEEE-EEEEEECEEEEEETTC
T ss_pred CCC---CCcceeE-EEeeeccEEEEEcCCC
Confidence 321 1222433 6888899999998776
No 163
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=92.36 E-value=0.42 Score=48.97 Aligned_cols=161 Identities=10% Similarity=0.006 Sum_probs=90.1
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHH-HcCCe-----EE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVE-YYGWR-----EV 75 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~-~~~W~-----~v 75 (834)
++|.+|| -|..+.........+...++|+|......+.......+.+.....++...+...++.+. ..|-+ ++
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i 135 (306)
T 8abp_A 56 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKES 135 (306)
T ss_dssp TTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccce
Confidence 3455544 34444445555566777899999876433222111111233344566666666666553 33333 88
Q ss_pred EEEE-EcC--CcccchHHHHHHHHhcCCc---EEEeeecCCCCCChHHHHHHHHHhhcCC--ceE-EEEEeChhhHHHHH
Q 003275 76 IAIF-VDD--DYGRNGISVLGDALSKKRA---KISYKAPFSPGASRSAINSLLVGANLME--SRV-FVVHVNPDTGLTIF 146 (834)
Q Consensus 76 ~iI~-~d~--~~g~~~~~~l~~~l~~~g~---~I~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-ivl~~~~~~~~~i~ 146 (834)
+++. ... .......+.+.+++++.|. ++..... ...+...-...+.++.+.. ++. +|++++...+..++
T Consensus 136 ~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~ 213 (306)
T 8abp_A 136 AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 213 (306)
T ss_dssp EEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC--SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHH
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeecc--CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHH
Confidence 8886 332 2344567889999998774 2332222 1223344455555555544 455 35556677888999
Q ss_pred HHHHhCCCCCCCeEEEEeC
Q 003275 147 SVAKSLGMTAGSYVWIATD 165 (834)
Q Consensus 147 ~~a~~~g~~~~~~vwi~~~ 165 (834)
+++++.|+.......+..|
T Consensus 214 ~al~~~g~~v~di~vvG~D 232 (306)
T 8abp_A 214 RATEGQGFKAADIIGIGIN 232 (306)
T ss_dssp HHHHHTTCCGGGEEEEEES
T ss_pred HHHHHcCCCCCceEEEEeC
Confidence 9999999865233334444
No 164
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=92.29 E-value=0.23 Score=50.69 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=85.1
Q ss_pred HHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-cccchHHHHHHHH
Q 003275 18 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD-YGRNGISVLGDAL 96 (834)
Q Consensus 18 ~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~-~g~~~~~~l~~~l 96 (834)
......+...++|+|......+.. ..+ ....++..-+..+++.+...|-+++++|..... ......+.+.+++
T Consensus 89 ~~~~~~~~~~~iPvV~~~~~~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l 162 (298)
T 3tb6_A 89 IGYYLNLEKNGIPFAMINASYAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAH 162 (298)
T ss_dssp HHHHHHHHHTTCCEEEESSCCTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCcCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHH
Confidence 344456677899999876543221 222 345567777888888888889999999986543 3445678899999
Q ss_pred hcCCcEEEeeecCCCCCCh--HHHHHHHHHhhcC--C--ceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 97 SKKRAKISYKAPFSPGASR--SAINSLLVGANLM--E--SRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 97 ~~~g~~I~~~~~~~~~~~~--~~~~~~l~~l~~~--~--~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
++.|+.+............ ......+.++.+. . +++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 163 RERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9998764322111111000 1112233333322 2 56654 4566778889999999998765544444
No 165
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=92.25 E-value=3.1 Score=41.94 Aligned_cols=159 Identities=13% Similarity=0.007 Sum_probs=89.2
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCC-C-CCCCceEEccCChHHHHHHHHHHHHHc-C--CeEEE
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLT-S-LQYPYFLRTTQSDYYQMHAVADLVEYY-G--WREVI 76 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls-~-~~~p~~~r~~ps~~~q~~aia~ll~~~-~--W~~v~ 76 (834)
.+|.+|| -|..+.........+...++|+|......+... . ...++.-....++..-+..+++.+... | -++++
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~ 137 (288)
T 1gud_A 58 KNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVA 137 (288)
T ss_dssp SSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEE
Confidence 4677655 343332212223444567999998754321110 0 000110234566666677777877555 7 89999
Q ss_pred EEEEcCCc--ccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHh
Q 003275 77 AIFVDDDY--GRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKS 151 (834)
Q Consensus 77 iI~~d~~~--g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~ 151 (834)
+|..+... .....+.+.+++++. |+.+.... ....+...-...+.++.+ ..+++|+ +.+...+..+++++++
T Consensus 138 ~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~ 214 (288)
T 1gud_A 138 IIEGKAGNASGEARRNGATEAFKKASQIKLVASQ--PADWDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVAN 214 (288)
T ss_dssp EEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHH
T ss_pred EEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEee--cCCccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHh
Confidence 99854332 234578899999988 88765422 112222333334444433 2355544 4566678899999999
Q ss_pred CCCCCCCeEEEEeC
Q 003275 152 LGMTAGSYVWIATD 165 (834)
Q Consensus 152 ~g~~~~~~vwi~~~ 165 (834)
.|+. .+...+..|
T Consensus 215 ~G~~-~dv~vvGfD 227 (288)
T 1gud_A 215 AGKT-GKVLVVGTD 227 (288)
T ss_dssp TTCT-TTSEEEEES
T ss_pred cCCC-CCeEEEEeC
Confidence 9984 344455544
No 166
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=92.23 E-value=0.43 Score=49.84 Aligned_cols=136 Identities=12% Similarity=0.022 Sum_probs=84.8
Q ss_pred HHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC-CcccchHHHHHHHHhc
Q 003275 20 ISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD-DYGRNGISVLGDALSK 98 (834)
Q Consensus 20 ~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~-~~g~~~~~~l~~~l~~ 98 (834)
....+...++|+|......+ . +.. ....++...+..+++.+...|-+++++|..+. .......+.+.+++++
T Consensus 133 ~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~ 205 (339)
T 3h5o_A 133 FERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDA 205 (339)
T ss_dssp HHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 34556678999998643211 1 122 55667777788888888888999999998653 3344567889999999
Q ss_pred CCcEEEeee-cCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 99 KRAKISYKA-PFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 99 ~g~~I~~~~-~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
.|+...... ......+...-...+.++.+ ..+++|+ +++...+..+++++++.|+..++-+-++
T Consensus 206 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 206 ADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp TTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 987211111 11112222333344444433 3466655 4666788889999999998765544333
No 167
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=92.20 E-value=0.28 Score=49.51 Aligned_cols=128 Identities=8% Similarity=0.067 Sum_probs=75.6
Q ss_pred hhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CcccchHHHHHHHHhcCC
Q 003275 23 VVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLGDALSKKR 100 (834)
Q Consensus 23 ~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~--~~g~~~~~~l~~~l~~~g 100 (834)
.+...++|+|......+.. . ....++...+..+++.+...|-+++++|..+. .......+.+.+++++.|
T Consensus 81 ~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~ 152 (277)
T 3e61_A 81 TLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQR 152 (277)
T ss_dssp HHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcC
Confidence 5667799999876543211 1 45667777788888888888999999998543 344456789999999998
Q ss_pred cEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 101 AKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 101 ~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
+.+.. . +....+..+-...+.+ ...+++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 153 ~~~~~-~-~~~~~~~~~~~~~l~~--~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 153 IDYKM-L-EATLLDNDKKFIDLIK--ELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp -CEEE-E-EGGGGGSHHHHHHHHH--HHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCccc-e-ecCCCCHHHHHHHhhc--CCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 87654 1 1111111222222222 23456654 4566778889999999998765544444
No 168
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=92.18 E-value=7.6 Score=37.09 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=57.6
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||++.. . ...+-.+++..+.+..+ .+.+++.. ++...++++|.+|++|+++...
T Consensus 14 g~lrIg~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 71 (228)
T 2fyi_A 14 GVLTIATTHT--Q------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASE 71 (228)
T ss_dssp EEEEEEECHH--H------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred ceEEEeeccc--h------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEec
Confidence 5799998321 1 12455788899988886 46677665 5688999999999999998642
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
... ....+. ..++....+++++++..
T Consensus 72 ~~~--~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 72 RLS--NDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp SST--TCTTEE-EEEEEEECEEEEEETTC
T ss_pred ccC--CCCCce-EEEeeecceEEEecCCC
Confidence 211 111222 35788888899888765
No 169
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=92.16 E-value=0.014 Score=54.08 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=56.0
Q ss_pred HhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEE
Q 003275 510 GAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 584 (834)
Q Consensus 510 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 584 (834)
++++|.++... .++...++..++||++.++...| .-.|.+..+|++.++|+++++++.+...+.+++.++.
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544432 23344678899999999997665 5589999999999999999999999999999988774
No 170
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=92.13 E-value=6.4 Score=39.40 Aligned_cols=83 Identities=7% Similarity=-0.042 Sum_probs=57.2
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||++.. + ...+-.+++..+.+..+ .+.+++.. ++..+++.+|.+|++|+++...
T Consensus 91 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 148 (294)
T 1ixc_A 91 GELSVAYFGT--P------------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRF 148 (294)
T ss_dssp EEEEEEECSG--G------------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESC
T ss_pred ceEEEEEccc--h------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEec
Confidence 5799999322 1 12455788888888876 45566664 4577899999999999998754
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... ..+ -+.|.....++++++...
T Consensus 149 ~~~~---~~l-~~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 149 FPRH---PGI-EIVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCCC---TTE-EEEEEEEEEEEEEEEGGG
T ss_pred CCCC---CCc-eEEEEeeccEEEEEeCCC
Confidence 3221 122 246778888899888765
No 171
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.10 E-value=4.1 Score=41.30 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=55.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee-
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD- 452 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~- 452 (834)
++||||++.. . ...+-.+++..+.+..+ .+.+++.. ++..+++++|.+|++|+++..
T Consensus 101 ~~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 158 (310)
T 2esn_A 101 RTFVFAATDY--T------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYD 158 (310)
T ss_dssp CEEEEECCHH--H------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECC
T ss_pred ceEEEEeChH--H------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecC
Confidence 5799998311 1 12445678888888876 45566664 345567889999999999875
Q ss_pred --eeeecCceeeEEecceeeeceEEEEEecCC
Q 003275 453 --ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 453 --~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
...... .+ -+.|+....++++++...
T Consensus 159 ~~~~~~~~---~l-~~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 159 EEHERLPE---GI-QAHDWFADRYVVVARRDH 186 (310)
T ss_dssp STTCCCCT---TE-EEEEEEEECEEEEEESSC
T ss_pred cccccCCc---Cc-ceeeeeccceEEEEeCCC
Confidence 322211 12 246778888899888765
No 172
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=92.08 E-value=0.65 Score=49.04 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=44.3
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhH
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYI 659 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 659 (834)
.+|++++||. |++|.+. +......+ +.++.. .+++ +..|.+.+|++ |.+|+.....+.+
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~---pv~~-~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAS---TVLL-PGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCE---EECC-CGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCe---eeec-ChHHHHHHHHc----CCcceeecCCcch
Confidence 6899999997 9999988 55455555 345543 3334 67789999999 8999998777666
No 173
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=91.99 E-value=0.43 Score=48.98 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=89.8
Q ss_pred CCcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 3 NEVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 3 ~~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
.+|.+|| -|..... .....+...++|+|...... .... +-....++..-+..+++.+...|-++|++|..+
T Consensus 82 ~~vdgiIi~~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 153 (305)
T 3huu_A 82 KSVDGFILLYSLKDD--PIEHLLNEFKVPYLIVGKSL---NYEN---IIHIDNDNIDAAYQLTQYLYHLGHRHILFLQES 153 (305)
T ss_dssp TCCSEEEESSCBTTC--HHHHHHHHTTCCEEEESCCC---SSTT---CCEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCEEEEeCCcCCc--HHHHHHHHcCCCEEEECCCC---cccC---CcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4565554 3322221 34455667899999875432 1122 233556677777888888888899999999865
Q ss_pred CC--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHh-hc--CCceEEEEEeChhhHHHHHHHHHhCCCCC
Q 003275 82 DD--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA-NL--MESRVFVVHVNPDTGLTIFSVAKSLGMTA 156 (834)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~ 156 (834)
.. ......+.+.+++++.|+.+.. .+.... ..-...+.++ .+ ..+++|+ +.+...+..+++++++.|+..
T Consensus 154 ~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~~--~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~v 228 (305)
T 3huu_A 154 GHYAVTEDRSVGFKQYCDDVKISNDC--VVIKSM--NDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRI 228 (305)
T ss_dssp SCBHHHHHHHHHHHHHHHHTTCCCCE--EEECSH--HHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred cccchhHHHHHHHHHHHHHcCCCccc--EEecCc--HHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 43 3445688999999999876543 111111 1123334444 32 3456654 466678888999999999875
Q ss_pred CCe-EEEEeC
Q 003275 157 GSY-VWIATD 165 (834)
Q Consensus 157 ~~~-vwi~~~ 165 (834)
++- ..+..|
T Consensus 229 P~di~vig~D 238 (305)
T 3huu_A 229 PEDIQTATFN 238 (305)
T ss_dssp TTTCEEEEES
T ss_pred CcceEEEEEC
Confidence 443 344433
No 174
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=91.64 E-value=1.1 Score=46.97 Aligned_cols=149 Identities=12% Similarity=0.031 Sum_probs=86.2
Q ss_pred CCcEEEE--CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEE
Q 003275 3 NEVVAAI--GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFV 80 (834)
Q Consensus 3 ~~V~aii--Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~ 80 (834)
++|.+|| +|..... .+...+...++|+|...... ....+ ....++..-+...++.+...|-++|++|..
T Consensus 117 ~~vdGiIi~~~~~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g 187 (349)
T 1jye_A 117 QRVSGLIINYPLDDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAG 187 (349)
T ss_dssp TTCSCEEEESCCCHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCEEEEecCCCChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3454444 5544332 22233445789999875321 11223 234555556666777777779999999986
Q ss_pred cCC--cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCC
Q 003275 81 DDD--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTA 156 (834)
Q Consensus 81 d~~--~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~ 156 (834)
+.. ......+.+.+++++.|+.+.... ....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..
T Consensus 188 ~~~~~~~~~R~~Gf~~al~~~gi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~v 264 (349)
T 1jye_A 188 PLSSVSARLRLAGWHKYLTRNQIQPIAER--EGDWSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRV 264 (349)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCSEEE--ECCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCB
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccc--cCCCChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 533 234567889999999987543211 1111222222333343332 456654 455667888999999999876
Q ss_pred CCeEEEE
Q 003275 157 GSYVWIA 163 (834)
Q Consensus 157 ~~~vwi~ 163 (834)
++-+-++
T Consensus 265 P~disvv 271 (349)
T 1jye_A 265 GADISVV 271 (349)
T ss_dssp TTTBEEE
T ss_pred CCcEEEE
Confidence 5444444
No 175
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=91.30 E-value=0.14 Score=40.85 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeE
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSI 581 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~ 581 (834)
++.+++|+++.++.-.| +-.|.+..+|++.+.|.++++.+.+...+.+++.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998665 5589999999999999999999988887776653
No 176
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=91.13 E-value=1.4 Score=45.41 Aligned_cols=152 Identities=11% Similarity=-0.003 Sum_probs=83.2
Q ss_pred CCcEEEECCCChhhHHHHHHhhccC-CccEEecccCCCCCCCCCCCceEEccCChHHHHHHH----HHHHHHcCC-eEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAV----ADLVEYYGW-REVI 76 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~ai----a~ll~~~~W-~~v~ 76 (834)
+++.+||...... ..++..++..+ ++|++......+ . .+.+-.... +..++..+ +..+...|- |+|+
T Consensus 61 ~~~dgIi~~~~~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig 133 (318)
T 2fqx_A 61 ENMGLVVACGSFL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVG 133 (318)
T ss_dssp TTCSEEEEESTTT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCEEEECChhH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEE
Confidence 4566666542221 22344555543 899987643221 0 122222222 44444444 456666676 8999
Q ss_pred EEEEcC-CcccchHHHHHHHHhcCCcEEEeeecCCCCC-ChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 77 AIFVDD-DYGRNGISVLGDALSKKRAKISYKAPFSPGA-SRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~-~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~-~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
+|.... .........+.+.+++.|..+.....+.-.. +...-.....++.+.++++|+. .....+..+++++++.|+
T Consensus 134 ~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~d~~a~Gv~~a~~e~g~ 212 (318)
T 2fqx_A 134 FIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQ-VAGGTGNGVIKEARDRRL 212 (318)
T ss_dssp EEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEE-ECGGGHHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhhhh
Confidence 997543 3344567888999988876432222222111 2222233444554556887654 555678888999999887
Q ss_pred CCCCeEEEE
Q 003275 155 TAGSYVWIA 163 (834)
Q Consensus 155 ~~~~~vwi~ 163 (834)
. +.-++++
T Consensus 213 ~-P~dv~vi 220 (318)
T 2fqx_A 213 N-GQDVWVI 220 (318)
T ss_dssp T-TCCCEEE
T ss_pred c-cCCcEEE
Confidence 7 4444544
No 177
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=91.00 E-value=0.91 Score=47.47 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=41.4
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHH---HhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHH
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYL---VDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL 661 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 661 (834)
+.+++++||. |++||+.. +....++ .+..+++...+.......+...++.+ |.+|+.+...++...
T Consensus 101 ~~~~~~~dLk--GK~ig~~~-~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYVG-EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQV 169 (342)
T ss_dssp SCCSSGGGGT--TCEEEESS-SHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHHH
T ss_pred cccCCHHHhC--CCEEEecC-CchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchHH
Confidence 4567899997 99999864 4333222 23445555544444334455678888 899998876665443
No 178
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=90.91 E-value=0.99 Score=46.94 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=83.4
Q ss_pred HhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHhcC
Q 003275 22 HVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSKK 99 (834)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~~~ 99 (834)
..+...++|+|......+. ...+ ....++...+..+++.+...|-+++++|..+.. ......+.+.+++++.
T Consensus 130 ~~~~~~~iPvV~~~~~~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~ 203 (333)
T 3jvd_A 130 GSIAPEGIPMVQLTRGELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIY 203 (333)
T ss_dssp TCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCCCEEEECccCCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHC
Confidence 4456678999987543321 2223 345566777777888887789999999986533 3455688999999999
Q ss_pred CcEEEeeecCCCCCChHHHHHHHHHhhcCC-ceEEEEEeChhhHHHHHHHHHhCCCCCCCeE-EEEeC
Q 003275 100 RAKISYKAPFSPGASRSAINSLLVGANLME-SRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV-WIATD 165 (834)
Q Consensus 100 g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivl~~~~~~~~~i~~~a~~~g~~~~~~v-wi~~~ 165 (834)
|+.... .. ...+..+-...+.++.+.. +++|+ +++...+..+++++++.|+..++-+ .+..|
T Consensus 204 g~~~~~--~~-~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 204 GAEVTF--HF-GHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp TCEEEE--EE-CCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCEEE--ec-CCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 987221 10 1123334344444444333 66655 4566778889999999998755433 34434
No 179
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=90.37 E-value=1.7 Score=41.81 Aligned_cols=71 Identities=7% Similarity=-0.079 Sum_probs=44.6
Q ss_pred eHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCc-ccEEeeeeeeecC---ceeeEE--ecceeeeceEEE
Q 003275 403 CIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNK-FDAAVGDITIVTN---RTKLVD--FTQPYMESGLVV 476 (834)
Q Consensus 403 ~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~-~D~~~~~~~i~~~---r~~~vd--fs~p~~~~~~~~ 476 (834)
.-++++.+.++-+.++.+ .. ++-..++.+|.+|+ +|+++..-....+ ....+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~v~~--~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVI--SS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCCEEE--EE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCeEEE--EE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 346777777776766444 32 34678999999998 9998763211111 111111 246888888888
Q ss_pred EEecCC
Q 003275 477 VAPVQK 482 (834)
Q Consensus 477 vv~~~~ 482 (834)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 888665
No 180
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=90.15 E-value=1.9 Score=44.05 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=41.6
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechh
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELP 657 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~ 657 (834)
.+|++++||. |+++.+. |+.....+ +.++.. .++. ...|...+|++ |.+|+......
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~ 185 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGAV---PTTV-QTPEVPQAFST----GVIDAMLTSPA 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTSE---EEEC-CGGGHHHHHHT----TSCSBEEECHH
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCCc---ceec-cHHHHHHHHhc----ceeeeEecCcc
Confidence 5899999997 9999986 65555555 345533 3444 67889999999 89999865443
No 181
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=90.14 E-value=0.097 Score=43.34 Aligned_cols=57 Identities=12% Similarity=0.279 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEee
Q 003275 530 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 586 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 586 (834)
.++.+++|+++.++...| +-.|.+..+|++.++|.++++.+.+...+.+++.++.+.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 368899999999998665 558999999999999999999999999998887665544
No 182
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=89.71 E-value=2 Score=43.83 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=42.1
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhh
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 658 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 658 (834)
.+|++++||. |++|.+. |+.....++ .++.. .++. ...|...+|++ |.+|+.......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~~ 185 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAE-LVGAQ---PVTV-QQAELAQAMAT----GVIDSYMSSGST 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHH-HHTCE---EEEC-CGGGHHHHHHT----TSCSEEEECHHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHH-HcCCc---ceec-CHHHHHHHHhc----CeeeEEecCccc
Confidence 5899999997 9999986 655455553 45533 3444 67889999999 899998654433
No 183
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=89.62 E-value=6 Score=40.02 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=57.2
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||++.. + ...+-..++..+.+..+ .+.+++.. ++.++++..|.+|++|+++...
T Consensus 92 g~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASPA--I------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECHH--H------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEechH--H------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 5789998311 1 12455788888888876 45576665 4567789999999999998754
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... ...+ -+.|+....++++++...
T Consensus 150 ~~~~~-~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHDI-DTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGGS-CTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCCC-ccCe-eEEEeecCcEEEEEcCCC
Confidence 32210 1111 256788889999998765
No 184
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=89.50 E-value=15 Score=37.38 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=56.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||++.. + ...+-..++..+.+..+ .+.+++.. ++.+.++.+|.+|++|+++...
T Consensus 93 g~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTHT--Q------------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECHH--H------------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEechh--h------------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 5789998311 1 12445788888888876 45566654 5578999999999999998743
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... ...+. +.|+....++++++...
T Consensus 151 ~~~~--~~~l~-~~~L~~~~~~~v~~~~~ 176 (324)
T 1al3_A 151 ALHL--YDDLV-MLPCYHWNRSIVVTPEH 176 (324)
T ss_dssp CCCT--TSCEE-EEEEEEECEEEEECTTS
T ss_pred CCCC--CCCee-EEEecCCceEEEEcCCC
Confidence 2211 11222 36777788888887665
No 185
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=89.37 E-value=0.19 Score=42.96 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEE
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 584 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 584 (834)
++.+++|+++.++...| +-.|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998665 5589999999999999999999999888888766543
No 186
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=88.94 E-value=1.3 Score=46.80 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=52.9
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhh-cCC
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMS-KTN 667 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~-~~~ 667 (834)
.+|++++||. |++|.+. + .....++ .++.. .++. ...|...+|++ |.+|+.....++..+-.. .+-
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~~-~lGa~---pv~~-~~~e~y~ALq~----G~VDg~~~~~p~~~~~~~~~ev 229 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVME-RLGVV---PQQI-AGGDIYPALEK----GTIDATEWVGPYDDEKLGFFKV 229 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHHH-TTTCE---EECC-CTTSHHHHHHH----TSCSEECCSCHHHHHHHTGGGT
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHHH-HcCCc---ceec-CHHHHHHHHhC----CCcceeeccCccchhhcChHHh
Confidence 6899999997 9999887 5 3445553 45543 2222 45688899999 899998765555432111 113
Q ss_pred ccEEEeCC-cccccceEEEEcCC
Q 003275 668 CEFRTVGQ-EFTKSGWGFAFQRD 689 (834)
Q Consensus 668 ~~l~~v~~-~~~~~~~~~~~~k~ 689 (834)
.++..... ........+++.++
T Consensus 230 ~k~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 230 APYYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp CCEEEECBTTCSSCEEEEEEEHH
T ss_pred hheeeccCccccccceEEEEcHH
Confidence 34444333 22223456677664
No 187
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=88.91 E-value=1.5 Score=45.20 Aligned_cols=150 Identities=7% Similarity=-0.086 Sum_probs=87.8
Q ss_pred CcEEEE-CCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHH-------cCCeEE
Q 003275 4 EVVAAI-GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-------YGWREV 75 (834)
Q Consensus 4 ~V~aii-Gp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~-------~~W~~v 75 (834)
+|.+|| -|..+.........+...++|+|.+....+.. .... .....++...+..+++.+.. .|-+++
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i 134 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNI 134 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEE
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEE
Confidence 444444 45554444555566778899999876543321 1222 23455677777778877766 688899
Q ss_pred EEEEEcC--CcccchHHHHHHHHhcC---C-cEEEeee-----cCCCCCChHHHHHHHHHhhc-----CCceEEEEEeCh
Q 003275 76 IAIFVDD--DYGRNGISVLGDALSKK---R-AKISYKA-----PFSPGASRSAINSLLVGANL-----MESRVFVVHVNP 139 (834)
Q Consensus 76 ~iI~~d~--~~g~~~~~~l~~~l~~~---g-~~I~~~~-----~~~~~~~~~~~~~~l~~l~~-----~~~~vivl~~~~ 139 (834)
++|..+. .......+.+.+++++. | +.+.... ......+...-...+.++.+ ..+++|+ +.+.
T Consensus 135 ~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd 213 (330)
T 3uug_A 135 ELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPYD 213 (330)
T ss_dssp EECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSH
T ss_pred EEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCC
Confidence 9986433 23345578888888886 3 5543211 00111122222333333333 4555543 4566
Q ss_pred hhHHHHHHHHHhCCCCCCC
Q 003275 140 DTGLTIFSVAKSLGMTAGS 158 (834)
Q Consensus 140 ~~~~~i~~~a~~~g~~~~~ 158 (834)
..+..+++++++.|+..+.
T Consensus 214 ~~A~g~~~al~~~g~~vP~ 232 (330)
T 3uug_A 214 GLSIGIISSLKGVGYGTKD 232 (330)
T ss_dssp HHHHHHHHHHHHTTCSSSS
T ss_pred chHHHHHHHHHHcCCCCCC
Confidence 7788999999999987643
No 188
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=88.60 E-value=0.26 Score=50.84 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=50.7
Q ss_pred CCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEee
Q 003275 527 PPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 586 (834)
Q Consensus 527 ~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 586 (834)
....++..++||++.++.-.| ...|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 92 ~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 92 QSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999998664 558999999999999999999999998888888777554
No 189
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=88.25 E-value=0.5 Score=53.42 Aligned_cols=120 Identities=8% Similarity=0.072 Sum_probs=71.4
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccc-eeeEEEEeecccCC-----CChhhhhcCCC
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTAS-LTSILTVQQLTSQI-----EGIDSLISSTE 602 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~i-----~s~~dL~~~~~ 602 (834)
++..++||++.++...| .-.|.+..+|++.++|.++++.+.+...+. ++++++.+...... ....+.. ..
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 128 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--RG 128 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC--CS
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC
Confidence 68999999999998665 457899999999999999998887777666 44444332221111 1111111 12
Q ss_pred CeeE-eeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCC-ceEEEEechh
Q 003275 603 PIGV-QDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGG-GVAAIVDELP 657 (834)
Q Consensus 603 ~v~~-~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~a~~~~~~ 657 (834)
++.+ ..|....... +.+......++..+..++..+.+.+ . ++.++.++..
T Consensus 129 hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~ 180 (565)
T 4gx0_A 129 HILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPT 180 (565)
T ss_dssp CEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTT
T ss_pred eEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCC
Confidence 2333 3344333333 3333233445556666666666666 5 6677777643
No 190
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=88.00 E-value=1.8 Score=43.49 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=83.5
Q ss_pred hhccCCccEEecccC-CCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CcccchHHHHHHHHhcC
Q 003275 23 VVNELNVPLLSFGAT-DPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLGDALSKK 99 (834)
Q Consensus 23 ~~~~~~vP~Is~~at-~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~--~~g~~~~~~l~~~l~~~ 99 (834)
.+...++|+|..... .+ + +.+ ....++..-+..+++.+. .|-+++++|.... .......+.+.+++++.
T Consensus 80 ~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~ 151 (277)
T 3hs3_A 80 PNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKL 151 (277)
T ss_dssp TTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHC
Confidence 345678999987543 22 1 223 566777777777888878 9999999998543 33445678999999999
Q ss_pred CcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 100 RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 100 g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
|+.+... ...... + ...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+-++
T Consensus 152 g~~~~~~-~~~~~~---~-~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 152 KIDYLLE-ETPENN---P-YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp TCEEEEE-ECCSSC---H-HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCCCCC-CccCCc---h-HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9987654 333221 2 333444433 3455554 3566678889999999998765444444
No 191
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=87.96 E-value=6.9 Score=38.09 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCc-ccEEeeeeeeecCc---eeeEE--ecceeeeceEEEE
Q 003275 404 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNK-FDAAVGDITIVTNR---TKLVD--FTQPYMESGLVVV 477 (834)
Q Consensus 404 ~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~-~D~~~~~~~i~~~r---~~~vd--fs~p~~~~~~~~v 477 (834)
-++.+.+.+..|.++.+.+ ++-..++.++.+|. +|+.++.-.-..++ ...+. ...+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677777777787755544 34567889998887 99988742211111 11221 2357888889999
Q ss_pred EecCC
Q 003275 478 APVQK 482 (834)
Q Consensus 478 v~~~~ 482 (834)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98765
No 192
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=87.82 E-value=0.54 Score=42.33 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEE
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSIL 582 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 582 (834)
++..++||++.++...| .-.|.+..+|++.++|.++++.+.+...+++++.+
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 105 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV 105 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998765 55899999999999999999999998888876554
No 193
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=87.71 E-value=0.34 Score=50.72 Aligned_cols=121 Identities=11% Similarity=0.094 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCChhhhhcCCCCeeEe-
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQ- 607 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v~~~- 607 (834)
++..++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 57789999999998665 4579999999999999999999999999999888887654432211 11111 2223332
Q ss_pred eCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHH
Q 003275 608 DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIE 660 (834)
Q Consensus 608 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~ 660 (834)
.|....... +.+..... ++..+..++..+ +.. .+..++.++..--+
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~----~~~~~i~gd~~~~~ 168 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLR----SGANFVHGDPTRVS 168 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHH----TTCEEEESCTTSHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHh----CCcEEEEeCCCCHH
Confidence 233333332 23322223 444555555555 554 45666666644333
No 194
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=87.08 E-value=14 Score=36.07 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 407 FEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 407 l~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
++...++-|++ ++++.| .+|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 34455566766 666676 4699999999999999964
No 195
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=86.95 E-value=0.98 Score=47.67 Aligned_cols=132 Identities=8% Similarity=0.038 Sum_probs=81.0
Q ss_pred HhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc-------------------C
Q 003275 22 HVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD-------------------D 82 (834)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d-------------------~ 82 (834)
..+...++|+|...... .....++ ...++..-+..+++.+...|-+++++|... .
T Consensus 145 ~~l~~~~iPvV~i~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~ 218 (366)
T 3h5t_A 145 DAIRARGLPAVIADQPA---REEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQY 218 (366)
T ss_dssp HHHHHHTCCEEEESSCC---SCTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCC
T ss_pred HHHHHCCCCEEEECCcc---CCCCCCE---EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccccccccc
Confidence 44556699999865422 1223333 456677777888888888899999999832 2
Q ss_pred CcccchHHHHHHHHhcCCcEEEeeecC-CCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHhCCCCCCCe
Q 003275 83 DYGRNGISVLGDALSKKRAKISYKAPF-SPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 159 (834)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~I~~~~~~-~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~ 159 (834)
.......+.+.+++++.|+.+.....+ ....+..+-...+.++.+ ..+++|+. ++...+..+++++++.|+..++-
T Consensus 219 ~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~d 297 (366)
T 3h5t_A 219 QVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSVGKSAPAD 297 (366)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred chHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCc
Confidence 233456789999999998763211111 111122333334444432 34666544 55677888999999999875543
Q ss_pred E
Q 003275 160 V 160 (834)
Q Consensus 160 v 160 (834)
+
T Consensus 298 i 298 (366)
T 3h5t_A 298 L 298 (366)
T ss_dssp C
T ss_pred e
Confidence 3
No 196
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=86.95 E-value=3.2 Score=43.66 Aligned_cols=119 Identities=20% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCChhhhhcCCCCeeEee-------Cch-----------------------hhHHHHhhhcccc--cceEecCCHH---
Q 003275 590 QIEGIDSLISSTEPIGVQD-------GSF-----------------------AWNYLVDELKIAE--SRLVKLKNME--- 634 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~~--- 634 (834)
+|++++||. |++||+.. |+. ...+| +..+++. -+++.+....
T Consensus 110 ~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~~~ 186 (365)
T 2de3_A 110 PITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGVDV 186 (365)
T ss_dssp SCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTTCC
T ss_pred CCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCccccc
Confidence 799999997 99999986 542 22334 3344432 3455555431
Q ss_pred ----------------------HHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcc----cccceEEEEcC
Q 003275 635 ----------------------EYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEF----TKSGWGFAFQR 688 (834)
Q Consensus 635 ----------------------~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~----~~~~~~~~~~k 688 (834)
+...+|.+ |++||++...++......+ +..++.+.- ......+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~----G~vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~~ 259 (365)
T 2de3_A 187 PAEQLEESATVKGADLFPDVARGQAAVLAS----GDVDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVSS 259 (365)
T ss_dssp CHHHHHHSSBSSHHHHSTTHHHHHHHHHHS----SSCSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEEH
T ss_pred cccccccccccccccccccchhhHHHHHhC----CCcCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEcH
Confidence 26788988 9999999887776654333 244443321 11223555653
Q ss_pred ----CCc-chHH----HHHHHHhhhccc-cHHHHHHhhcC
Q 003275 689 ----DSP-LAID----LSTAILQLSENG-DLQKIHNKWLT 718 (834)
Q Consensus 689 ----~sp-l~~~----~~~~i~~l~e~G-~~~~i~~kw~~ 718 (834)
..| +... +.++...+.++. ...++..++++
T Consensus 260 ~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 260 GLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 344 4444 445555555542 34455555543
No 197
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=86.91 E-value=10 Score=38.54 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=47.6
Q ss_pred eeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEec
Q 003275 401 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 480 (834)
Q Consensus 401 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~ 480 (834)
.+-..++..+.+..+ .+.+++.. ++..+++.+|.+|++|+++....... ..+ -+.|+....++++++.
T Consensus 118 ~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l-~~~~l~~~~~~~v~~~ 185 (315)
T 1uth_A 118 YFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLLPELQ---TGF-FQRRLFRHRYVCMFRK 185 (315)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECCTTCC---TTE-EEEEEEEECEEEEEET
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecCCCCC---CCc-eEEEeeccceEEEEeC
Confidence 344678888888776 45566654 44567899999999999986432211 122 2457778888888876
Q ss_pred CC
Q 003275 481 QK 482 (834)
Q Consensus 481 ~~ 482 (834)
..
T Consensus 186 ~h 187 (315)
T 1uth_A 186 DH 187 (315)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 198
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=86.74 E-value=0.49 Score=46.07 Aligned_cols=72 Identities=10% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEE
Q 003275 508 FVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILT 583 (834)
Q Consensus 508 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 583 (834)
+.+.+++.+|+.. .++...++..++|+++.++...| .-.|.+..+|++.++++++++.+.+...+.+++.++
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556665521 22334689999999999998665 558999999999999999999999988888876543
No 199
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=86.72 E-value=0.38 Score=49.02 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEe
Q 003275 526 GPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQ 585 (834)
Q Consensus 526 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 585 (834)
+....++..++||++.++.-.| .-.|.+..+|++.+++.++++++.+..++.+++.++.+
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445679999999999997654 55899999999999999999999999888888777654
No 200
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=86.36 E-value=6 Score=39.07 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCc-ccEEeeeeeeecCc---eeeEE--ecceeeeceEEEE
Q 003275 404 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNK-FDAAVGDITIVTNR---TKLVD--FTQPYMESGLVVV 477 (834)
Q Consensus 404 ~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~-~D~~~~~~~i~~~r---~~~vd--fs~p~~~~~~~~v 477 (834)
-+|.+.+.++.|.++++.+ ++-..++.+|.+|. +|+.++.-.-..++ ...++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677777777787755544 34567889999887 99988743211111 11121 2356777888999
Q ss_pred EecCC
Q 003275 478 APVQK 482 (834)
Q Consensus 478 v~~~~ 482 (834)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98775
No 201
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=86.03 E-value=10 Score=38.34 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=76.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccC-CccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHH-HHHHc-CCeEEEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVAD-LVEYY-GWREVIAIF 79 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~-ll~~~-~W~~v~iI~ 79 (834)
+++.+||..... ....+..++..+ ++|++......+ . +.+-.... |..++..++- ++.+. +-++|++|.
T Consensus 62 ~~vdgIi~~~~~-~~~~~~~~~~~~p~~p~v~id~~~~---~---~~~~~v~~-d~~~g~~lag~la~~l~~~~~Ig~i~ 133 (296)
T 2hqb_A 62 GGVNLIFGHGHA-FAEYFSTIHNQYPDVHFVSFNGEVK---G---ENITSLHF-EGYAMGYFGGMVAASMSETHKVGVIA 133 (296)
T ss_dssp TTCCEEEECSTH-HHHHHHTTTTSCTTSEEEEESCCCC---S---SSEEEEEE-CCHHHHHHHHHHHHHTCSSSEEEEEE
T ss_pred CCCCEEEEcCHh-HHHHHHHHHHHCCCCEEEEEecCcC---C---CCEEEEEe-chHHHHHHHHHHHHhhccCCeEEEEc
Confidence 467888875332 233455565544 788887643211 1 22222222 3344444432 23332 458999998
Q ss_pred EcCCcccchHHHHHHHHhcCCcEEEeeecCCCCC-ChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCC
Q 003275 80 VDDDYGRNGISVLGDALSKKRAKISYKAPFSPGA-SRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLG 153 (834)
Q Consensus 80 ~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~-~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g 153 (834)
...... ....+.+.+++.|.. .....+.-.. +...-.....++.+.++++|+. .....+..+++++++.|
T Consensus 134 g~~~~~--r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 134 AFPWQP--EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp SCTTCH--HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred CcCchh--hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 543322 788899999998874 2222222111 2222334455555567887654 45556788899999987
No 202
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=85.60 E-value=7.1 Score=39.07 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=55.6
Q ss_pred CCCChhhhhcCCC--CeeEeeCchhhH----HHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHh
Q 003275 590 QIEGIDSLISSTE--PIGVQDGSFAWN----YLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFM 663 (834)
Q Consensus 590 ~i~s~~dL~~~~~--~v~~~~~s~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 663 (834)
.|+|++||..... ++|...+..... -+.+.++++...+... +..+...++.+ |++|++....+....-
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~~~- 197 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSRVD- 197 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHHHH-
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcchh-
Confidence 7999999973211 333322211110 0234456654555655 56678999999 9999998877765532
Q ss_pred hcCCccEEEeCCc---ccccceEEEEcCCCcchHHHHHHHHhh
Q 003275 664 SKTNCEFRTVGQE---FTKSGWGFAFQRDSPLAIDLSTAILQL 703 (834)
Q Consensus 664 ~~~~~~l~~v~~~---~~~~~~~~~~~k~spl~~~~~~~i~~l 703 (834)
+ .+++++... +.......+++++..=...+-+.|.++
T Consensus 198 -~--~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l 237 (275)
T 1sw5_A 198 -L--FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLL 237 (275)
T ss_dssp -H--TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTT
T ss_pred -c--CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHH
Confidence 2 245555432 222233445555421002344455444
No 203
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=83.40 E-value=5.2 Score=37.53 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=50.1
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++||||+... . ...+-.+++..+.+..+ .+++++.. . +.+.+|.+|++|+++...
T Consensus 7 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~i~~-------~---~~~~~l~~g~~D~~i~~~ 61 (213)
T 3hhf_B 7 GVLSVDSAMP--M------------VLHLLAPLAAKFNERYP-HIRLSLVS-------S---EGYINLIERKVDIALRAG 61 (213)
T ss_dssp EEEEEEECHH--H------------HHHTHHHHHHHHHHHCT-TEEEEEEC-------C---STTHHHHTTSSSEEEECC
T ss_pred ceEEEecCHH--H------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------C---CcHHHHHhCCccEEEEEe
Confidence 5789998311 1 12355788888888876 34555552 1 113458899999998754
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... .+ -+.++....+++++++..
T Consensus 62 ~~~~~---~~-~~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 62 ELDDS---GL-RARHLFDSRFRVIASPEY 86 (213)
T ss_dssp --CCS---SE-EEEEEEEECEEEEECHHH
T ss_pred cCCCc---cc-eEEeeecceEEEEeCHHH
Confidence 33222 22 257788889999987654
No 204
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=82.62 E-value=0.77 Score=46.85 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=80.8
Q ss_pred HhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cccchHHHHHHHHhcC
Q 003275 22 HVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSKK 99 (834)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~--~g~~~~~~l~~~l~~~ 99 (834)
..+...++|+|......+.. .. +-....++...+..+++.+...|-++|++|..+.. ......+.+.+++++.
T Consensus 86 ~~~~~~~iPvV~~~~~~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~ 160 (301)
T 3miz_A 86 PESGDVSIPTVMINCRPQTR--EL---LPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEF 160 (301)
T ss_dssp CCCTTCCCCEEEEEEECSST--TS---SCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCCCCCC--CC---CCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHc
Confidence 44556789998765433211 02 22345567777788888888889999999986543 3445678899999998
Q ss_pred CcEEE----eee---cCCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHhCCCCCCCeEEEE
Q 003275 100 RAKIS----YKA---PFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 163 (834)
Q Consensus 100 g~~I~----~~~---~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~i~~~a~~~g~~~~~~vwi~ 163 (834)
|+.+. ... ........ +...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 230 (301)
T 3miz_A 161 GLTENDLSISLGMDGPVGAENNY--VFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQDVSIV 230 (301)
T ss_dssp TCCGGGEEEEECEESSTTSCEEC--HHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHHHCEEE
T ss_pred CCCCCcceEEEcCCCCcCccccH--HHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeeEE
Confidence 87532 111 12111111 11333344333 456654 4566678889999999998654433333
No 205
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=81.72 E-value=6.1 Score=40.77 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=43.5
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhH
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYI 659 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 659 (834)
.+|++++||. |++|.+..+......++ .++.. .++. ...|...+|++ |.+|+.....+.+
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~~-alGa~---pv~m-~~~Evy~ALq~----G~VDg~~~p~~~~ 207 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESIR-SLGAI---PVAV-NFGEIYTAVQT----RAVDGAELTYANV 207 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHHH-HHTSE---EECC-CGGGHHHHHHT----TSCSEEEECHHHH
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHHH-HcCCE---eeec-CHHHHHHHHHc----CCeeEEECCHHHH
Confidence 6899999997 99998875444455553 55543 2333 56789999999 8999998865554
No 206
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=81.57 E-value=9.8 Score=40.15 Aligned_cols=90 Identities=8% Similarity=-0.017 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP- 139 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~- 139 (834)
..+.++++.+|.+++.+|+.......+..+.+.+.|++.|+++.....+..+.+.+.+...+..+++.++|+||-.+.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4466778889999998888665444446889999999999887544445555567888999999988899999877654
Q ss_pred -hhHHHHHHHHH
Q 003275 140 -DTGLTIFSVAK 150 (834)
Q Consensus 140 -~~~~~i~~~a~ 150 (834)
-|+.+++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 46666665544
No 207
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=81.21 E-value=7.9 Score=41.01 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCccc--chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-
Q 003275 62 AVADLVEYYGWREVIAIFVDDDYGR--NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN- 138 (834)
Q Consensus 62 aia~ll~~~~W~~v~iI~~d~~~g~--~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~- 138 (834)
.+.++++.+|.+++.+|+....+.. +..+.+.+.+++.|+++.....+..+.+.+.+...+..+++.++|+||-.+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3566777788899988886655555 4789999999999988744344555556688899999999999999996654
Q ss_pred -hhhHHHHHHHH
Q 003275 139 -PDTGLTIFSVA 149 (834)
Q Consensus 139 -~~~~~~i~~~a 149 (834)
.-|+.+++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 45677766554
No 208
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=80.95 E-value=44 Score=32.76 Aligned_cols=71 Identities=11% Similarity=-0.050 Sum_probs=47.6
Q ss_pred eHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCce-eeEEecceeeeceEEEEEecC
Q 003275 403 CIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT-KLVDFTQPYMESGLVVVAPVQ 481 (834)
Q Consensus 403 ~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~-~~vdfs~p~~~~~~~~vv~~~ 481 (834)
-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++........+. ..+. ..|+....+++++++.
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~ 112 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQA 112 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCC
Confidence 3567888888774 23455554 56788999999999999987543322110 1222 3678888889988866
Q ss_pred C
Q 003275 482 K 482 (834)
Q Consensus 482 ~ 482 (834)
.
T Consensus 113 ~ 113 (290)
T 1twy_A 113 N 113 (290)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=80.36 E-value=0.8 Score=48.19 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=56.6
Q ss_pred HHHHHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEE
Q 003275 505 FFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSIL 582 (834)
Q Consensus 505 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 582 (834)
.+++.+++.+.+++..+.+ ...++..++|+++.++...| .-.|.+..+|++.++++++++++.+...+.+++.+
T Consensus 139 ~~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 214 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666776543221 12468899999999998665 55899999999999999999999999999887655
Q ss_pred E
Q 003275 583 T 583 (834)
Q Consensus 583 t 583 (834)
.
T Consensus 215 ~ 215 (355)
T 3beh_A 215 Y 215 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=78.41 E-value=58 Score=32.59 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=50.1
Q ss_pred eeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEec
Q 003275 401 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 480 (834)
Q Consensus 401 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~ 480 (834)
.+-.+++..+.+..+ .+.+++.. ++..+++.+|.+|++|+++........ .+ -+.|+....++++++.
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~~---~l-~~~~L~~~~~~~v~~~ 170 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKISDP---AI-KHSLLRNERLMVAVHA 170 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCCCCT---TE-EEEEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCCCCC---Cc-eEEEeecceEEEEEcC
Confidence 455788888888875 45566664 567899999999999999874432222 12 2467788888888887
Q ss_pred CC
Q 003275 481 QK 482 (834)
Q Consensus 481 ~~ 482 (834)
..
T Consensus 171 ~h 172 (312)
T 2h9b_A 171 SH 172 (312)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 211
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=78.29 E-value=1.3 Score=45.41 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEEEee
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 586 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 586 (834)
++..++||++.++.-.| ...|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998664 558999999999999999999999998888888776543
No 212
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=77.51 E-value=5.6 Score=40.06 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=40.9
Q ss_pred CCCeeEe-eCchhhHHHHh---hhcccccceEecC-CHHHHHHHHhcCCCCCceEEEEechhhHHHHhhc
Q 003275 601 TEPIGVQ-DGSFAWNYLVD---ELKIAESRLVKLK-NMEEYSIALARGPKGGGVAAIVDELPYIELFMSK 665 (834)
Q Consensus 601 ~~~v~~~-~~s~~~~~l~~---~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~ 665 (834)
|++|++. .|+.....++. ..++ ..+++... +..+...++.+ |++||.+...|+......+
T Consensus 96 GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 96 EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRK 160 (283)
T ss_dssp SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHH
T ss_pred CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhh
Confidence 8899975 56654443332 3344 24455444 68999999999 9999998888887765544
No 213
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=77.48 E-value=2.3 Score=47.05 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=53.5
Q ss_pred HHHhhhheeecccCCCCCCCCCcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEEE
Q 003275 508 FVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILT 583 (834)
Q Consensus 508 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 583 (834)
+.+.+++..+... ......++..++|+++.++...| .-.|.+..+|++.++++++++++.+.+.|.+.+-+.
T Consensus 356 if~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~ 429 (514)
T 2r9r_B 356 LFSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429 (514)
T ss_dssp HHHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554321 23344679999999999998664 457888999999999999999999999988876443
No 214
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=77.39 E-value=18 Score=36.86 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=43.8
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhH
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYI 659 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 659 (834)
.+|++++||. |++|.+.........++ .++.. .++. ...|...+|++ |.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~-alGa~---pv~m-~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAK-YVGAS---PTPM-AFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCE---EEEC-CGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHH-HcCCe---eeec-CHHHHHHHHHc----CCcceEeccHHHH
Confidence 5899999997 99998875443345553 45543 3333 56789999999 8999998876665
No 215
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=77.08 E-value=9.5 Score=38.70 Aligned_cols=128 Identities=12% Similarity=0.144 Sum_probs=78.6
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC----C--CCCceEEccCChHHHHHHHHHHHHHc--CCe
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS----L--QYPYFLRTTQSDYYQMHAVADLVEYY--GWR 73 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~----~--~~p~~~r~~ps~~~q~~aia~ll~~~--~W~ 73 (834)
.+++.+||+- .+..+.++.. ...++|+|..+.++|.-.. . .-+++..+. +..-....+++++.. +-+
T Consensus 67 ~~~~DlIiai-~t~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k 141 (302)
T 3lkv_A 67 GENPDVLVGI-ATPTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVK 141 (302)
T ss_dssp TTCCSEEEEE-SHHHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCC
T ss_pred hcCCcEEEEc-CCHHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCC
Confidence 3567777763 4455555544 3457999987777776432 1 123454433 222233445565543 689
Q ss_pred EEEEEEEcCCc-ccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 74 EVIAIFVDDDY-GRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 74 ~v~iI~~d~~~-g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
++++||...+- .....+.+++.+++.|+++...... +..++...+..+. .+.+++++..+.
T Consensus 142 ~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~~~l~-~~~d~i~~~~d~ 203 (302)
T 3lkv_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYALIDN 203 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHH-TTCSEEEECSCH
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHhcc-CCeeEEEEeCCc
Confidence 99999976543 3455778889999999998754332 3356777777765 457787776554
No 216
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=77.05 E-value=34 Score=31.83 Aligned_cols=104 Identities=8% Similarity=-0.018 Sum_probs=54.8
Q ss_pred CChhhhhcCCCC-eeEeeCchhhHHHHhhhc---ccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC
Q 003275 592 EGIDSLISSTEP-IGVQDGSFAWNYLVDELK---IAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 667 (834)
Q Consensus 592 ~s~~dL~~~~~~-v~~~~~s~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 667 (834)
-+++||. +.+ +....+.....++..... .........++.+...+.+.. |..-+++....... ......
T Consensus 96 ~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~-~~~~~~ 168 (219)
T 3kos_A 96 QTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTH-LLSSER 168 (219)
T ss_dssp SSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHH-HHHTTS
T ss_pred CCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHH-HHHcCC
Confidence 4567776 333 344445555555543221 111334667899999999998 44445555433333 333312
Q ss_pred ccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhh
Q 003275 668 CEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQL 703 (834)
Q Consensus 668 ~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l 703 (834)
.. ....+......++++.+++.+....+...+..+
T Consensus 169 l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 169 IV-QPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp SB-CCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred ee-ccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 21 122223334467888888876665555554443
No 217
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=76.91 E-value=11 Score=37.60 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCC-------CChHHHHHHHHHhhcCCceE
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG-------ASRSAINSLLVGANLMESRV 132 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~-------~~~~~~~~~l~~l~~~~~~v 132 (834)
..++++.++..|-++|+++. .|.....+.+.+.+++.|+++......... .+...+...++++...++|+
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 35556666777889999996 466556678889999999998655443321 23456777778887778999
Q ss_pred EEEE-eChhh
Q 003275 133 FVVH-VNPDT 141 (834)
Q Consensus 133 ivl~-~~~~~ 141 (834)
||+. |..-.
T Consensus 211 IvLg~CT~l~ 220 (273)
T 2xed_A 211 LVISCAVQMP 220 (273)
T ss_dssp EEEESSSSSC
T ss_pred EEEcCCCCcc
Confidence 9998 86543
No 218
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=75.73 E-value=69 Score=32.11 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=49.7
Q ss_pred eeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEec
Q 003275 401 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 480 (834)
Q Consensus 401 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~ 480 (834)
.+-..++..+.+..+ .+.+++.. ++..++..+|.+|++|+++........ .+ -..|+....++++++.
T Consensus 103 ~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~~---~l-~~~~L~~~~~~~v~~~ 170 (313)
T 2h98_A 103 GLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLKITDP---AI-RRIMLHKEQLKLAIHK 170 (313)
T ss_dssp TTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSCCCCT---TE-EEEEEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCCCCCC---Ce-eEEEeeeCcEEEEEcC
Confidence 455788888888875 35566664 567899999999999999874332211 12 2467788888888887
Q ss_pred CC
Q 003275 481 QK 482 (834)
Q Consensus 481 ~~ 482 (834)
..
T Consensus 171 ~h 172 (313)
T 2h98_A 171 HH 172 (313)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 219
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=73.15 E-value=13 Score=39.17 Aligned_cols=101 Identities=8% Similarity=0.025 Sum_probs=69.5
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhh
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN 126 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~ 126 (834)
|+-+...+... ..+.++++.+|.+++.+|+.......+..+.+.+.+++.|+++.....+..+.+.+.+...+..++
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~ 85 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQ 85 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH
Confidence 44444444332 335667777888998888754444344788999999999988754444555556688899999999
Q ss_pred cCCceEEEEEeC--hhhHHHHHHHHH
Q 003275 127 LMESRVFVVHVN--PDTGLTIFSVAK 150 (834)
Q Consensus 127 ~~~~~vivl~~~--~~~~~~i~~~a~ 150 (834)
+.++|+||-.+. .-|+.+++....
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 86 NSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred hcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 889999996654 456777665544
No 220
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=72.62 E-value=23 Score=36.78 Aligned_cols=139 Identities=11% Similarity=-0.006 Sum_probs=78.8
Q ss_pred CCcEEEECCCChhhHHHHHHhhccC-CccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHH----HHHHcCCeEEEE
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVAD----LVEYYGWREVIA 77 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~----ll~~~~W~~v~i 77 (834)
+++.+||+. +.....++..++.++ ++|++-..... .. |.+..... +.+++..++- ++.. =++|++
T Consensus 85 ~g~d~Ii~~-g~~~~~~~~~vA~~~Pdv~fv~id~~~---~~---~Nv~sv~~-~~~eg~ylaG~~A~~~tk--~~kIGf 154 (356)
T 3s99_A 85 AGNKLIFTT-SFGYMDPTVKVAKKFPDVKFEHATGYK---TA---DNMSAYNA-RFYEGRYVQGVIAAKMSK--KGIAGY 154 (356)
T ss_dssp TTCSEEEEC-SGGGHHHHHHHHTTCTTSEEEEESCCC---CB---TTEEEEEE-CHHHHHHHHHHHHHHHCS--SCEEEE
T ss_pred CCCCEEEEC-CHHHHHHHHHHHHHCCCCEEEEEeccc---cC---CcEEEEEe-chhHHHHHHHHHHHHhcC--CCEEEE
Confidence 567788886 445566777787775 78888653321 11 22222222 2334444444 4432 378999
Q ss_pred EEEcC-CcccchHHHHHHHHhcCCcEEEeeecCCCC-CChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 78 IFVDD-DYGRNGISVLGDALSKKRAKISYKAPFSPG-ASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 78 I~~d~-~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~-~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
|.... .........+.+.++..+..+.....+.-. .+...-......+.+.++|+|+.+.... .++++|++.|.
T Consensus 155 Vgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 155 IGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp EECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred ECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 98543 223345778888888776544332223211 1223334445555567899887765543 67889998773
No 221
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=71.60 E-value=12 Score=35.87 Aligned_cols=79 Identities=10% Similarity=-0.055 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCC-------CChHHHHHHHHHhhcC--Cc
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG-------ASRSAINSLLVGANLM--ES 130 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~-------~~~~~~~~~l~~l~~~--~~ 130 (834)
..++++.++..|-++|+++. .|+....+.+.+.+++.|+++......... .+...+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 57777777778889999996 466566678888999999988655443321 1334566777777666 78
Q ss_pred eEEEEEeChhh
Q 003275 131 RVFVVHVNPDT 141 (834)
Q Consensus 131 ~vivl~~~~~~ 141 (834)
++||+.|..-.
T Consensus 173 daIvLgCT~l~ 183 (223)
T 2dgd_A 173 DAVYIACTALS 183 (223)
T ss_dssp SEEEECCTTSC
T ss_pred CEEEEeCCccc
Confidence 99999876543
No 222
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=71.60 E-value=62 Score=32.85 Aligned_cols=81 Identities=10% Similarity=-0.078 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEe-CC-cccccceEEEEcCCCcchHHHHHHHHhhhccc
Q 003275 630 LKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTV-GQ-EFTKSGWGFAFQRDSPLAIDLSTAILQLSENG 707 (834)
Q Consensus 630 ~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v-~~-~~~~~~~~~~~~k~spl~~~~~~~i~~l~e~G 707 (834)
..+..+..+.+.+ |++++.+.....+..+... ..++..+ +. .......+++++++++-.+.--+.|.-+.+..
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~-~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e 290 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKA-KPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKE 290 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHH-CTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHH
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhc-CCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHH
Confidence 4577888889988 8998888766555554444 3333333 21 12223468899999998777777777766554
Q ss_pred cHHHHHHh
Q 003275 708 DLQKIHNK 715 (834)
Q Consensus 708 ~~~~i~~k 715 (834)
....+.+.
T Consensus 291 ~q~~~~~~ 298 (351)
T 4edp_A 291 VQEKTAKA 298 (351)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 223
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=70.95 E-value=19 Score=36.62 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 404 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 404 ~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
..+++.+.+.+|+++++... .+..-+...|.+|++|+...
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEec
Confidence 35666777778988665421 34567888999999999865
No 224
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=70.25 E-value=97 Score=31.97 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHHhC-CCCcCEEEEecCCCCCCCChHHHHHHHH-hC-cccEEeeeeeeecCce---eeEEecceeeeceEEEE
Q 003275 404 IDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVA-LN-KFDAAVGDITIVTNRT---KLVDFTQPYMESGLVVV 477 (834)
Q Consensus 404 ~dll~~l~~~l-~~~~~~~~~~~~~~~~n~s~~~~~~~l~-~g-~~D~~~~~~~i~~~r~---~~vdfs~p~~~~~~~~v 477 (834)
-+|.+.+.++. |.++.+.+- .-..++.++. .| .+|+.++.-.-..++. ...+...+|....++++
T Consensus 58 ~~l~~~Fe~~~pgv~V~~~~g---------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVli 128 (354)
T 3k6v_A 58 EELEAEFEAQHPGVDVQREAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 128 (354)
T ss_dssp HHHHHHHHHHSTTCEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCcEEEEEeC---------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEE
Confidence 36777788887 877555542 3456788885 35 6999876322111111 12344567888899999
Q ss_pred EecCC
Q 003275 478 APVQK 482 (834)
Q Consensus 478 v~~~~ 482 (834)
+|+..
T Consensus 129 v~~~~ 133 (354)
T 3k6v_A 129 YTNES 133 (354)
T ss_dssp ECTTS
T ss_pred EECCC
Confidence 98766
No 225
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=70.21 E-value=26 Score=34.48 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=31.6
Q ss_pred eeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 402 YCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 402 ~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
+...|...+.+.+|+++++ .+ ++-.-+...|.+|++|+.....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKT--TA-------LDNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE--EE-------CChHHHHHHHHCCCCeEEEccc
Confidence 4467888888888987554 44 3356688999999999987643
No 226
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=69.94 E-value=4.7 Score=40.21 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=49.9
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|+||+... -...+-.+++..+.+..+ .+.+++... . ...+|.+|++|+++...
T Consensus 91 ~~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~v~i~~~~~------~----~~~~l~~~~~Dl~i~~~ 145 (291)
T 3szp_A 91 GRIRISAPSN--------------LTKRMMMPMFNAFMEKYP-DIHIELMMS------N----QADDLDPTEWDVIFRVG 145 (291)
T ss_dssp EEEEEEEETT--------------THHHHTHHHHHHHHHHCT-TEEEEEEEE------C----SCSCCCGGGCSEEEEES
T ss_pred eEEEEeccHH--------------HHHHHHHHHHHHHHHHCC-CeEEEEEEe------c----CccCccccCceEEEEec
Confidence 5799999422 112455788888888875 344555421 1 12467889999998754
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... .+ -..|+....++++++...
T Consensus 146 ~~~~~---~l-~~~~l~~~~~~~v~~~~~ 170 (291)
T 3szp_A 146 PQRDS---SL-IARKIGEVKDILVASPQY 170 (291)
T ss_dssp CCCCT---TC-EEEEEEEECEEEEECHHH
T ss_pred CCCCC---Ce-eEEEecccceEEEECHHH
Confidence 33222 12 246777888888887554
No 227
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=69.44 E-value=12 Score=39.77 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCccc-chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--
Q 003275 62 AVADLVEYYGWREVIAIFVDDDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-- 138 (834)
Q Consensus 62 aia~ll~~~~W~~v~iI~~d~~~g~-~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-- 138 (834)
.+.++++.+|.+++.+|+.+..... ...+.+.+.+++.|+++.....+.++.+.+.+...+..+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 3566777788899988885343333 3688899999988987653333444456678888999999999999997654
Q ss_pred hhhHHHHHHHH
Q 003275 139 PDTGLTIFSVA 149 (834)
Q Consensus 139 ~~~~~~i~~~a 149 (834)
.-|+.+++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 228
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=69.39 E-value=61 Score=31.46 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 406 VFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 406 ll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
.++...++-|++ ++++.| ..|...-..|.+|++|+..
T Consensus 21 ~v~~~l~k~Gi~--veiv~F------~dy~~pN~AL~~G~iD~n~ 57 (246)
T 4ef1_A 21 HVKPLLEKEGVK--LEVTTY------TDYVLPNKALESGDIDANY 57 (246)
T ss_dssp HHHHHHHHTTEE--EEEEEC------SSSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHHhcCCE--EEEEEe------CCchhHHHHHHCCCCCEEe
Confidence 345555666866 677776 3477788899999999865
No 229
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=69.28 E-value=77 Score=29.88 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=58.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeee
Q 003275 373 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 452 (834)
Q Consensus 373 g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~ 452 (834)
.++||||+... + ...+-.+++..+.+..+ .+.+++.. ++..++..+|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASDD--T------------ADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECHH--H------------HTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccch--h------------hHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 36899999321 1 12455788888888876 45577665 668899999999999999874
Q ss_pred eeeecCceeeEEecceeeeceEEEEEecCC
Q 003275 453 ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 453 ~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.... . --+.++....+++++++..
T Consensus 84 ~~~~-----~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKVD-----S-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------C-CCEEEEEEECEEEEEETTC
T ss_pred cCCC-----C-cceEEeecCCEEEEEcCCC
Confidence 4321 1 2357788889999998766
No 230
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=68.54 E-value=19 Score=35.99 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=62.7
Q ss_pred CCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCcc
Q 003275 590 QIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCE 669 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 669 (834)
.+++++||. +.+|+...-.....||. +.+.+ .+++.....-|..-.+ |-.|++++-......+.++ +
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDiVsTG~TLraN---g 186 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH---D 186 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT---T
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC---c
Confidence 345677774 78898888888889995 45555 5566655555544333 7788998877666665455 5
Q ss_pred EEEeCCcccccceEEEEcCCCc-c--hHHHHHHHHhhh
Q 003275 670 FRTVGQEFTKSGWGFAFQRDSP-L--AIDLSTAILQLS 704 (834)
Q Consensus 670 l~~v~~~~~~~~~~~~~~k~sp-l--~~~~~~~i~~l~ 704 (834)
|.++++.+....-.+...+.+. . .+.++..+.++.
T Consensus 187 L~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 187 LVAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred CEEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 7777444444555566666652 2 235666666664
No 231
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=68.22 E-value=19 Score=37.33 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=85.1
Q ss_pred CcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCC--CCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 4 EVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS--LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 4 ~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~--~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
++.+||............+.+.+.+++.|-+.+....... ....- +.+..++..-+..+++.+...|-|+++.|...
T Consensus 87 gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp 165 (371)
T 3qi7_A 87 EVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYAST 165 (371)
T ss_dssp TEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEET
T ss_pred CCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 4556665433322233345566666666544432211100 00011 23445555556666688999999999999865
Q ss_pred CCc----ccchHHHHHHHHhcCCcEEEeeecCCCCCChHHH---HHHHHH-----hhc-CCceEEEEEeChhhHHHHHHH
Q 003275 82 DDY----GRNGISVLGDALSKKRAKISYKAPFSPGASRSAI---NSLLVG-----ANL-MESRVFVVHVNPDTGLTIFSV 148 (834)
Q Consensus 82 ~~~----g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~---~~~l~~-----l~~-~~~~vivl~~~~~~~~~i~~~ 148 (834)
... .....+.+++++++.|+.+.....-.+ ..+..+ ...|.+ ++. ..++ -|++++...+..++++
T Consensus 166 ~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~~a~~lL~~~~~~~~~~~~~~T-AIFatND~mAiG~ika 243 (371)
T 3qi7_A 166 DDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKNKVKQFLNEDIEKQVKKYGKDI-NVFGVNEYMDEVILTK 243 (371)
T ss_dssp TGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHHHHHHHHHHHHHHHHHHHCSCC-EEEESSHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHHHHHHHHhccccchhhccCCCc-EEEECCHHHHHHHHHH
Confidence 432 223577899999999997755432211 122222 222221 112 2233 4566778899999999
Q ss_pred HHhCCCCCC
Q 003275 149 AKSLGMTAG 157 (834)
Q Consensus 149 a~~~g~~~~ 157 (834)
+.+.|...+
T Consensus 244 l~e~Gi~VP 252 (371)
T 3qi7_A 244 ALELKYIVA 252 (371)
T ss_dssp HHHHCCBBC
T ss_pred HHHcCCccC
Confidence 999997543
No 232
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.10 E-value=47 Score=26.81 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred EEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--
Q 003275 50 LRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-- 127 (834)
Q Consensus 50 ~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-- 127 (834)
|-...+|.....-|+.-++.-|- +++++|+|.+- ..-..-.+.++++|+.+.. + .+..|++.-+.+|-.
T Consensus 5 fvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrt---v---edkedfrenireiwery 75 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRT---V---EDKEDFRENIREIWERY 75 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEE---C---CSHHHHHHHHHHHHHHC
T ss_pred EEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceee---e---ccHHHHHHHHHHHHHhC
Confidence 44455677777888888888885 56789988652 2233345677889988753 2 245788888877754
Q ss_pred CCceEEEEEeC--hhhHHHHHHHHHhCCC
Q 003275 128 MESRVFVVHVN--PDTGLTIFSVAKSLGM 154 (834)
Q Consensus 128 ~~~~vivl~~~--~~~~~~i~~~a~~~g~ 154 (834)
.+-+++++... -.-...++..|++.|.
T Consensus 76 pqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 76 PQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp TTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 34567666543 4567789999999885
No 233
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=66.50 E-value=25 Score=36.76 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=67.5
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCccc-chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHh
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA 125 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~-~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l 125 (834)
|+-+...+... ..+.++++.+| +++.+|+....+.. +..+.+.+.+++.|+++.....+..+.+.+.+...+..+
T Consensus 19 p~~i~~G~g~~---~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEKIL---EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTTHH---HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 44444444322 33556677778 89988886644433 358899999999998765434444455668899999999
Q ss_pred hcCCceEEEEEeC--hhhHHHHHHHH
Q 003275 126 NLMESRVFVVHVN--PDTGLTIFSVA 149 (834)
Q Consensus 126 ~~~~~~vivl~~~--~~~~~~i~~~a 149 (834)
++.++|+||-.+. .-|+.+++...
T Consensus 95 ~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 95 RNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp TTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 9899999997654 45666666554
No 234
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=66.47 E-value=2.4 Score=42.30 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=49.2
Q ss_pred cchhhHHHHHHHHhhccC--CCcccccc-------hhhhHHHHHHHHHHhhhccccceeeEEEEeecccCCCC
Q 003275 530 QQLVTIFWFSFSTMFFSH--RENTVSSL-------GRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEG 593 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~--~~~~~s~~-------~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s 593 (834)
-++..++|+++.++.-.| .-.|.+.. +|++.++|+++++.+.+...+.+++++...+....+..
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~ 272 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYV 272 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999997665 44666664 59999999999999999999998887766655544433
No 235
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=65.47 E-value=22 Score=35.91 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=37.9
Q ss_pred CCCChhhhhc-----CCCCeeEeeCchhhHH----HH-hhhcccccceEecCCHH----HHHHHHhcCCCCCceEEEEec
Q 003275 590 QIEGIDSLIS-----STEPIGVQDGSFAWNY----LV-DELKIAESRLVKLKNME----EYSIALARGPKGGGVAAIVDE 655 (834)
Q Consensus 590 ~i~s~~dL~~-----~~~~v~~~~~s~~~~~----l~-~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~g~~~a~~~~ 655 (834)
.|+|++||.+ .|+.+++..|+....+ ++ +.+++..-+++. .+.. +...++.+ |+++++..-
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~~a~~~~A~~~----g~~~v~~~w 178 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGMLAQVARAEKS----GDPIVFLGW 178 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHHHHHHHHHHHT----TCCCEEEEE
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHHHHHHHHHHHC----CCCEEEEEe
Confidence 6888899863 2667888777754332 33 245553233333 2332 23466666 899988777
Q ss_pred hhh
Q 003275 656 LPY 658 (834)
Q Consensus 656 ~~~ 658 (834)
.+.
T Consensus 179 ~p~ 181 (298)
T 2rin_A 179 EPH 181 (298)
T ss_dssp ESS
T ss_pred ccC
Confidence 665
No 236
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=65.12 E-value=20 Score=36.20 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=58.4
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~-~~~~i~~~a 149 (834)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+..... .....++.+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 467888754 678888999999999999998876433 22345556778888888999998876543 345677788
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 87764
No 237
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=64.92 E-value=83 Score=31.27 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHHHHh-CCCCcCEEEEecCCCCCCCChHHHHHHHHh-Cc-ccEEeeeeeeec---CceeeEEecceeeeceEEEE
Q 003275 404 IDVFEAAVNL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-NK-FDAAVGDITIVT---NRTKLVDFTQPYMESGLVVV 477 (834)
Q Consensus 404 ~dll~~l~~~-l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~-g~-~D~~~~~~~i~~---~r~~~vdfs~p~~~~~~~~v 477 (834)
-++++.+.++ -|.++++.+ ++...++.++.. |. +|+.++.-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 4677777777 487755543 345678899988 75 999876321111 11122345678888889999
Q ss_pred EecCC
Q 003275 478 APVQK 482 (834)
Q Consensus 478 v~~~~ 482 (834)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 88765
No 238
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=63.11 E-value=8.3 Score=40.73 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh--
Q 003275 62 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-- 139 (834)
Q Consensus 62 aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-- 139 (834)
.+.++++.+| +++.+|+....+. ...+.+.+.+++ |+.+.+ ..+..+.+.+++...+..+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 118 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKT 118 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 3566778889 9998888655543 367788888998 988744 344555567888888888888899999887654
Q ss_pred hhHHHHHH
Q 003275 140 DTGLTIFS 147 (834)
Q Consensus 140 ~~~~~i~~ 147 (834)
-|+.+++.
T Consensus 119 ~D~AK~iA 126 (387)
T 3uhj_A 119 ADTAKIVA 126 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 35555554
No 239
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=63.08 E-value=48 Score=32.98 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 404 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 404 ~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
..|...+.+.+|+++++ .+ ++-.-+...|.+|++|+.....
T Consensus 32 ~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~AL~~G~iD~~~e~w 72 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEI--FS-------VTTSIMYQYLASGKIDGTVSSW 72 (280)
T ss_dssp HHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHCCCceEE--EE-------CCcHHHHHHHHCCCCcEEEecc
Confidence 56677777778987554 44 2346688999999999987643
No 240
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=62.83 E-value=12 Score=39.54 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=52.3
Q ss_pred ccCCCChhhhhcCCCCeeEeeCchhhHHHHh------hhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHH
Q 003275 588 TSQIEGIDSLISSTEPIGVQDGSFAWNYLVD------ELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL 661 (834)
Q Consensus 588 ~~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 661 (834)
...|++++||. + ||++.+.....+... +.+.. .+++.|++..+++.+|.+ |++||++.+..+...
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~~-~~~~~y~~~~~a~~aL~n----G~vDAiv~~~~~~~~ 95 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNTD-LTVNQSSSYLAAYKSLIA----GETKAIVLNSVFENI 95 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCCC-CEEEECSSHHHHHHHHHT----TSCSCEEEEHHHHHH
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCCc-ceEEecCCHHHHHHHHHc----CCCCEEEEchHHHHH
Confidence 47999999997 4 999998876665432 11221 457899999999999999 999999999877766
Q ss_pred Hhh
Q 003275 662 FMS 664 (834)
Q Consensus 662 ~~~ 664 (834)
+..
T Consensus 96 le~ 98 (398)
T 2xxp_A 96 IEL 98 (398)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 241
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=62.71 E-value=55 Score=32.48 Aligned_cols=47 Identities=13% Similarity=-0.118 Sum_probs=33.1
Q ss_pred CChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEecCC
Q 003275 432 PIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 432 ~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
.+...+++.|.+|++|+++........ .+ -+.|+....+++++++..
T Consensus 127 ~~~~~~~~~l~~g~~D~~i~~~~~~~~---~l-~~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 127 EDQDHSARLLREGVAMGAVTTERNPVP---GC-RVHPLGEMRYLPVASRPF 173 (303)
T ss_dssp CCHHHHHHHHHTTSCSEEEESCCSCCT---TE-EEEEEEEEEEEEEECHHH
T ss_pred cChHHHHHHHHcCcceEEEecCCCCCC---Ce-EEEEccceeEEEEecchH
Confidence 557889999999999998864332222 22 256777888888887654
No 242
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=62.31 E-value=56 Score=32.52 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=44.8
Q ss_pred eHHHHHHHHHh-CCCCcCEEEEecCCCCCCCChHHHHHHHHh-Cc-ccEEeeeeeeec---CceeeEEecceeeeceEEE
Q 003275 403 CIDVFEAAVNL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-NK-FDAAVGDITIVT---NRTKLVDFTQPYMESGLVV 476 (834)
Q Consensus 403 ~~dll~~l~~~-l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~-g~-~D~~~~~~~i~~---~r~~~vdfs~p~~~~~~~~ 476 (834)
.-++++.+.++ -|.++++.+ ++-..++.++.. |. +|+.++.-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 476644433 346678999988 75 999876321111 1122334567888888899
Q ss_pred EEecCC
Q 003275 477 VAPVQK 482 (834)
Q Consensus 477 vv~~~~ 482 (834)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887664
No 243
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=61.21 E-value=1.2e+02 Score=30.00 Aligned_cols=70 Identities=7% Similarity=-0.008 Sum_probs=44.7
Q ss_pred HHHHHHHHHh-CCCCcCEEEEecCCCCCCCChHHHHHHHHh-Cc-ccEEeeeeee--e-cCceeeEEecceeeeceEEEE
Q 003275 404 IDVFEAAVNL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-NK-FDAAVGDITI--V-TNRTKLVDFTQPYMESGLVVV 477 (834)
Q Consensus 404 ~dll~~l~~~-l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~-g~-~D~~~~~~~i--~-~~r~~~vdfs~p~~~~~~~~v 477 (834)
-++++.+.++ -|.++++.+ ++-..++.++.. |. +|+.++.-.. . ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 4677777777 477744432 446778899988 75 9998763211 1 111223345678888888988
Q ss_pred EecCC
Q 003275 478 APVQK 482 (834)
Q Consensus 478 v~~~~ 482 (834)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87664
No 244
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=60.07 E-value=56 Score=32.67 Aligned_cols=102 Identities=15% Similarity=0.066 Sum_probs=62.4
Q ss_pred CCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCcc
Q 003275 590 QIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCE 669 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 669 (834)
.+.++++|. +.+|+...-.....||. +.+.+ ..++.....-|..-.+ |-.|++++-......+.++ +
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDivsTG~TLraN---g 181 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN---G 181 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT---T
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecccCHHHHHHC---C
Confidence 345566664 77888888778888985 45555 4555555444444333 6788998876666555444 5
Q ss_pred EEEeCCcccccceEEEEcCCC--cc-hHHHHHHHHhhhc
Q 003275 670 FRTVGQEFTKSGWGFAFQRDS--PL-AIDLSTAILQLSE 705 (834)
Q Consensus 670 l~~v~~~~~~~~~~~~~~k~s--pl-~~~~~~~i~~l~e 705 (834)
|.+++..+.+. -.+...+.+ +. .+.++..+.++..
T Consensus 182 L~~ie~I~~Ss-A~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 182 LREVEVIYRSK-ACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp EEEEEEEEEEC-EEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred CEEeEEEEeeE-EEEEEeccccChhHHHHHHHHHHHHHH
Confidence 77775554444 445556665 23 2456666666643
No 245
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=58.46 E-value=38 Score=32.36 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeee-----cCceeeEE--ecceeeeceEEE
Q 003275 404 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV-----TNRTKLVD--FTQPYMESGLVV 476 (834)
Q Consensus 404 ~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~-----~~r~~~vd--fs~p~~~~~~~~ 476 (834)
-++++.+.++.|.++.+.+ ++-..++.++. +.+|+++.+-... .+-...++ -..++....+++
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 85 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAII 85 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceEE
Confidence 4677777777787754432 44567888888 8999988754211 11000122 124556666777
Q ss_pred EEecCC
Q 003275 477 VAPVQK 482 (834)
Q Consensus 477 vv~~~~ 482 (834)
+++...
T Consensus 86 ~~~~~~ 91 (237)
T 2hxw_A 86 LTQKGN 91 (237)
T ss_dssp EESTTC
T ss_pred EEeCCC
Confidence 776543
No 246
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=56.49 E-value=26 Score=36.43 Aligned_cols=110 Identities=8% Similarity=0.047 Sum_probs=71.3
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhh
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN 126 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~ 126 (834)
|+-+...+... ..+.++++.+|.+++.+|+....+. ...+.+.+.+++.|+++......+ +.+.+.+... ..++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-NIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-CCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-CCCHHHHHHH-HHhh
Confidence 45445544432 2356677888888998888655443 467888899998898764333233 3355777777 8888
Q ss_pred cCCceEEEEEeC--hhhHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 003275 127 LMESRVFVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATDWL 167 (834)
Q Consensus 127 ~~~~~vivl~~~--~~~~~~i~~~a~~~g~~~~~~vwi~~~~~ 167 (834)
+.++|+||-.+. .-|+.+++... .+ ..++-|.|...
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA~~--~~---~p~i~IPTT~~ 123 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMAFL--RK---LPFISVPTSTS 123 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHH--HT---CCEEEEESCCS
T ss_pred hcCCCEEEEECChHHHHHHHHHHhh--cC---CCEEEecCccc
Confidence 888999997655 45666666532 23 45666776544
No 247
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=55.70 E-value=27 Score=34.68 Aligned_cols=79 Identities=6% Similarity=0.032 Sum_probs=57.6
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~i~~~a 149 (834)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+.... ......++.+
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 568888764 557777889999999999998876432 2233455677788878889999887543 4566778888
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 248
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=55.66 E-value=32 Score=33.80 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=56.7
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|++|..+ +.|.......+.+++++.|..+.....- .+.......++.+...+.|.||+..... ...++.+.
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~ 82 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN---ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEIL 82 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT---TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHH
Confidence 578888864 5577788999999999999988764322 2334556778888888999999887655 66777777
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 83 ~~~i 86 (276)
T 3jy6_A 83 HQQM 86 (276)
T ss_dssp TTSS
T ss_pred HCCC
Confidence 7664
No 249
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=55.60 E-value=37 Score=33.31 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=39.1
Q ss_pred hhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEec-hhhHH
Q 003275 594 IDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE-LPYIE 660 (834)
Q Consensus 594 ~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~-~~~~~ 660 (834)
++||. |++|++..++....++.+.+- ...+++.. ...+...++.+ |++||.+.- .+++.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 67886 899999876655555433221 11244444 45588889988 899998875 66666
No 250
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.35 E-value=35 Score=33.88 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=57.7
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh----hHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD----TGLTIF 146 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~----~~~~i~ 146 (834)
+.|++|..+ +.|.......+.+++++.|..+.....- .+...-...++.+...+.|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789998864 5677888999999999999988764322 2335556778888888999998875432 345667
Q ss_pred HHHHhCCC
Q 003275 147 SVAKSLGM 154 (834)
Q Consensus 147 ~~a~~~g~ 154 (834)
+.+.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 77777775
No 251
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=54.48 E-value=27 Score=34.88 Aligned_cols=83 Identities=7% Similarity=-0.027 Sum_probs=58.0
Q ss_pred CeEEEEEEEc---CCcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHH
Q 003275 72 WREVIAIFVD---DDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLTIF 146 (834)
Q Consensus 72 W~~v~iI~~d---~~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~-~~~~i~ 146 (834)
=+.|++|..+ +.|.......+.+++++. |..+..........+.......++.+...+.|.||+..... .....+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 87 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFT 87 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHH
T ss_pred cceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHH
Confidence 3678877754 567778889999999988 77666544322222445566778888888999998876543 446677
Q ss_pred HHHHhCCC
Q 003275 147 SVAKSLGM 154 (834)
Q Consensus 147 ~~a~~~g~ 154 (834)
+.+.+.|+
T Consensus 88 ~~~~~~~i 95 (304)
T 3gbv_A 88 DALNELGI 95 (304)
T ss_dssp HHHHHHTC
T ss_pred HHHHHCCC
Confidence 77777775
No 252
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=53.87 E-value=21 Score=37.37 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=70.3
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhh
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN 126 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~ 126 (834)
|+-+...+... ..+.++++.+| +++.+|+....+. ...+.+.+.+++.|+++.+ ..+....+.+.+...+..++
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~ 83 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIAR 83 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHH
Confidence 44444444332 23566777778 8988888554433 4678889999999988753 23433345567888888888
Q ss_pred cCCceEEEEEeC--hhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 003275 127 LMESRVFVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATD 165 (834)
Q Consensus 127 ~~~~~vivl~~~--~~~~~~i~~~a~~~g~~~~~~vwi~~~ 165 (834)
+.++|+||-.+. .-|+.+++... .| ..++-|.|.
T Consensus 84 ~~~~d~IIavGGGsv~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 84 KAEAAIVIGVGGGKTLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHHHH--HT---CEEEEEESS
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHh--cC---CCEEEeccc
Confidence 889999996654 45666666532 23 456666665
No 253
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=52.88 E-value=35 Score=31.09 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=47.9
Q ss_pred eEEEEEEEcCCccc---chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003275 73 REVIAIFVDDDYGR---NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHVN 138 (834)
Q Consensus 73 ~~v~iI~~d~~~g~---~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~~ 138 (834)
-++++|...|+-|+ .....+.+.+++.|+++.....++. +.+++...+.+..+. ++|+||..+.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 47888887766664 2357888999999999988777773 347788888887654 5899988754
No 254
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.69 E-value=31 Score=34.24 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=57.0
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a 149 (834)
+.|+++..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+... .......++.+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 578888754 557778889999999999998876432 223455567778888888998888754 34444677788
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|+
T Consensus 86 ~~~~i 90 (293)
T 3l6u_A 86 KKAGI 90 (293)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 87775
No 255
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=52.26 E-value=10 Score=36.76 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=53.0
Q ss_pred eeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCce---eeEEecceeeeceEEE
Q 003275 400 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT---KLVDFTQPYMESGLVV 476 (834)
Q Consensus 400 ~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~---~~vdfs~p~~~~~~~~ 476 (834)
.|+.-+|+..+.++.+.++.+.+ ++-..++.++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46778889999888887655554 34667899999999999877554332211 1112346899999999
Q ss_pred EEecCCC
Q 003275 477 VAPVQKL 483 (834)
Q Consensus 477 vv~~~~~ 483 (834)
++|+..+
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998764
No 256
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=51.81 E-value=32 Score=35.40 Aligned_cols=80 Identities=5% Similarity=-0.046 Sum_probs=56.5
Q ss_pred CeEEEEEEEc--C-CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHH
Q 003275 72 WREVIAIFVD--D-DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIF 146 (834)
Q Consensus 72 W~~v~iI~~d--~-~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~i~ 146 (834)
-.+|++|..+ + .|.......+.+++++.|..+..... ..+.......+..+.+ .++|.||+.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 3578888864 2 67788899999999999998876422 2233444556666666 4899998876555667778
Q ss_pred HHHHhCCC
Q 003275 147 SVAKSLGM 154 (834)
Q Consensus 147 ~~a~~~g~ 154 (834)
+.+.+.|.
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88877774
No 257
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=51.20 E-value=20 Score=35.23 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=55.5
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|+++..+ +.|.....+.+.+++++.|..+..... ..+.......++.+.+.+.|.||+..........++.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 467888764 557778899999999999998876432 223345567778888888999888754422345666777
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7664
No 258
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=50.47 E-value=71 Score=32.02 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEe
Q 003275 407 FEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 450 (834)
Q Consensus 407 l~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~ 450 (834)
++...++.|++ ++++.| .++..+...|.+|++|+..
T Consensus 56 ~~~~~~~~G~~--Ve~~~f------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDID--VEIKHF------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTCC--EEEEEC------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEe------CChHHHHHHHHcCCCCEEc
Confidence 34455556877 666666 4478889999999999965
No 259
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.78 E-value=30 Score=34.62 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=56.9
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a 149 (834)
++|++|..+ +.|.......+.+++++.|..+.... ....+.......++.+...+.|.||+... .......++.+
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 567777754 56777889999999999999887632 22223455667777777788998888654 33445677888
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 260
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=49.34 E-value=65 Score=31.62 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=48.5
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|+||+... + ...+-..++..+.+..+ .+.+++... ... .++.+|++|+++...
T Consensus 88 ~~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~v~i~~~~~------~~~----~~l~~~~~Dl~i~~~ 142 (300)
T 3mz1_A 88 GRLRVETASA--F------------ANLVIIPALPEFHKKYP-DIQIDLGVS------DRT----IDYLAENVDCAIRAG 142 (300)
T ss_dssp EEEEEEECHH--H------------HHHTHHHHHHHHHHHCT-TEEEEEEEC------CCC------CCCTTCCEEEEES
T ss_pred ceEEEEecHH--H------------HHHHHHHHHHHHHHHCC-CcEEEEEeC------CCc----ccccccCCcEEEEec
Confidence 5799998311 1 12455678888888776 455655431 111 257889999998754
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
...... + -+.++....++++++...
T Consensus 143 ~~~~~~---l-~~~~l~~~~~~~v~~~~~ 167 (300)
T 3mz1_A 143 TLTDQS---L-IARRITEMKFVACASRDF 167 (300)
T ss_dssp SCSCTT---S-EEEEEEEECEEEEEEHHH
T ss_pred cCCCCC---e-EEEEeecceeEEEECHHH
Confidence 433222 2 246777788888887653
No 261
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.11 E-value=38 Score=34.29 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=57.1
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~i~~~a 149 (834)
+.|+++..+ +.|.......+.+++++.|..+..... ..+...-...++.+...+.|.||+.... ......++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 568888864 567788899999999999998876442 2233445566777777789998887543 3456778888
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87774
No 262
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=49.10 E-value=44 Score=34.05 Aligned_cols=89 Identities=6% Similarity=-0.109 Sum_probs=56.4
Q ss_pred HHHHHHHcCCeEEEEEEEc----CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 63 VADLVEYYGWREVIAIFVD----DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 63 ia~ll~~~~W~~v~iI~~d----~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
.++-+..-.-+.|+++..+ +.|....+..+.+++++.|..+..... ..+.......++.+...+.|.||+...
T Consensus 52 ~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 52 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp --------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3333444445678888865 456777889999999999998876432 123344456777888888999988765
Q ss_pred hhhHHHHHHHHHhCCC
Q 003275 139 PDTGLTIFSVAKSLGM 154 (834)
Q Consensus 139 ~~~~~~i~~~a~~~g~ 154 (834)
......+.+.+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SSCHHHHHHHHHHCSS
T ss_pred CCChHHHHHHHHcCCC
Confidence 4444556666666553
No 263
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=49.01 E-value=54 Score=31.89 Aligned_cols=94 Identities=11% Similarity=-0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003275 60 MHAVADLVEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 137 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 137 (834)
....++.+...|.+.|=+.... .+.....++.+++.+++.|+.+........ .....+...++..+..+++.|+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecC
Confidence 3556777888898888755321 123345578999999999999875443321 3456788888888888999999887
Q ss_pred ChhhHHHHHHHHHhCCC
Q 003275 138 NPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 138 ~~~~~~~i~~~a~~~g~ 154 (834)
..+....+.+.|.+.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 77777778888877775
No 264
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=48.60 E-value=54 Score=31.91 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEc------------CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC
Q 003275 61 HAVADLVEYYGWREVIAIFVD------------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM 128 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d------------~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~ 128 (834)
...++.+...|.+.|=+...+ ........+.+++.+++.|+++........ ....++...+...+..
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHc
Confidence 456677788888888765321 112234578999999999999876554432 2446788889888899
Q ss_pred CceEEEEEeChhhHHHHHHHHHhCCC
Q 003275 129 ESRVFVVHVNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 129 ~~~vivl~~~~~~~~~i~~~a~~~g~ 154 (834)
+++.|+++...+....+.+.|.+.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99999998766667777777777775
No 265
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=48.48 E-value=54 Score=32.35 Aligned_cols=80 Identities=4% Similarity=-0.142 Sum_probs=52.1
Q ss_pred CCeEEEEEEEc----CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003275 71 GWREVIAIFVD----DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIF 146 (834)
Q Consensus 71 ~W~~v~iI~~d----~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~ 146 (834)
.=..|+++..+ +.|.......+.+++++.|..+.... ...+.......++.+...+.|.||+....... ..+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~ 93 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEI 93 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHH
Confidence 34678888754 46777889999999999999876532 12233445566777777889988887543222 345
Q ss_pred HHHHh-CCC
Q 003275 147 SVAKS-LGM 154 (834)
Q Consensus 147 ~~a~~-~g~ 154 (834)
+.+.+ .|.
T Consensus 94 ~~l~~~~~i 102 (296)
T 3brq_A 94 DDIIDAHSQ 102 (296)
T ss_dssp HHHHHTCSS
T ss_pred HHHHhcCCC
Confidence 56666 554
No 266
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=47.24 E-value=14 Score=35.92 Aligned_cols=75 Identities=11% Similarity=0.001 Sum_probs=52.3
Q ss_pred eeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCce---eeEEecceeeeceEEE
Q 003275 400 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT---KLVDFTQPYMESGLVV 476 (834)
Q Consensus 400 ~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~---~~vdfs~p~~~~~~~~ 476 (834)
.|+.-+|+..+.++.+.++.+.+ ++-..++.++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 46677889999888887655554 33567899999999999876544332221 1112347888889999
Q ss_pred EEecCCC
Q 003275 477 VAPVQKL 483 (834)
Q Consensus 477 vv~~~~~ 483 (834)
++|+..+
T Consensus 89 V~P~~~P 95 (237)
T 3muq_A 89 VGPKADP 95 (237)
T ss_dssp EECTTCT
T ss_pred EEeCCCh
Confidence 9998764
No 267
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=47.20 E-value=48 Score=33.05 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=56.8
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a 149 (834)
.+|+++..+ +.|.....+.+.+++++.|..+..... . +.......++.+...+.|.||+... .......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 367778754 567778899999999999998865433 2 3455667788888888999988764 34455667788
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87774
No 268
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=46.86 E-value=43 Score=33.13 Aligned_cols=79 Identities=5% Similarity=-0.023 Sum_probs=53.8
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~i~~~a 149 (834)
+.|+++..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 467788754 667788899999999999998765322 2233444566777777889988886543 3334566777
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 269
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.18 E-value=1e+02 Score=24.03 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=54.0
Q ss_pred CCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHh
Q 003275 46 YPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA 125 (834)
Q Consensus 46 ~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l 125 (834)
..+-.|+.-++...-..+-.+++.|+-+-|+++..|.+|.+..+. |.+.+..+-.-|.+ . .+...+...-.++
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekair-fvkslgaqvliiiy----d--qdqnrleefsrev 97 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIR-FVKSLGAQVLIIIY----D--QDQNRLEEFSREV 97 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHH-HHHHHCCCCEEEEE----C--SCHHHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHH-HHHhcCCeEEEEEE----e--CchhHHHHHHHHH
Confidence 456789998888888889899999987777766655555443333 33333333222222 1 2223333334444
Q ss_pred hcCCceEEEEEeChhhHHHHH-HHHHhCC
Q 003275 126 NLMESRVFVVHVNPDTGLTIF-SVAKSLG 153 (834)
Q Consensus 126 ~~~~~~vivl~~~~~~~~~i~-~~a~~~g 153 (834)
++.+-.+-- ..+|++...-+ +..++.|
T Consensus 98 rrrgfevrt-vtspddfkkslerlirevg 125 (134)
T 2l69_A 98 RRRGFEVRT-VTSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHTTCCEEE-ESSHHHHHHHHHHHHHHHC
T ss_pred HhcCceEEE-ecChHHHHHHHHHHHHHhc
Confidence 444443332 24555544433 3334444
No 270
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=45.87 E-value=1.7e+02 Score=26.33 Aligned_cols=68 Identities=12% Similarity=-0.065 Sum_probs=42.7
Q ss_pred eeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEec
Q 003275 401 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 480 (834)
Q Consensus 401 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~ 480 (834)
.+-.+++..+.++.+ +++++.. ++..++.+.+.+|..|+++..-..... .+ -+.++....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~~~~~---~l-~~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAHDKPVQ---GC-RVTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESCCSCCT---TC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecCCCCCC---Cc-eEEEccceEEEEEECh
Confidence 456788999988885 4466654 445678899999955544442222211 12 2467777788887765
Q ss_pred C
Q 003275 481 Q 481 (834)
Q Consensus 481 ~ 481 (834)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 271
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=45.17 E-value=34 Score=35.49 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh--
Q 003275 62 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-- 139 (834)
Q Consensus 62 aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-- 139 (834)
.+.++++.+|.+++.+|+..... ...+.+.+.+++.++.+ +. .+.++.+.+.+...+..+++.++|+||-.+.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 99 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 46777888999999888855443 35788888888766543 22 33333455778888888888999999877654
Q ss_pred hhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 003275 140 DTGLTIFSVAKSLGMTAGSYVWIATDW 166 (834)
Q Consensus 140 ~~~~~i~~~a~~~g~~~~~~vwi~~~~ 166 (834)
-|+.+++... .+ ..++-|.|..
T Consensus 100 iD~aK~iA~~--~~---~p~i~IPTTa 121 (353)
T 3hl0_A 100 TGLGKAIALR--TD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHH--HC---CEEEEEECSS
T ss_pred HHHHHHHHhc--cC---CCEEEEeCCc
Confidence 4556655432 23 3456666654
No 272
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=44.56 E-value=60 Score=32.28 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=53.7
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCc-EEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLTIFSV 148 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~-~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~-~~~~i~~~ 148 (834)
+.|++|.. ++.|.......+.+++++.|. .+..... ..+.......++.+...+.|.||+..... .....++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 46777775 356777888999999999997 7765322 12334445667777778899888865433 34566777
Q ss_pred HHhCCC
Q 003275 149 AKSLGM 154 (834)
Q Consensus 149 a~~~g~ 154 (834)
+.+.|.
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 776664
No 273
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=44.54 E-value=1.1e+02 Score=25.36 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=42.8
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g~ 154 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..+....+++|++... ..++..++++.++...
T Consensus 10 livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 10 LVVDDDQ---AMAAAIERVLKRDHWQVEI---A------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---E------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTC
T ss_pred EEEECCH---HHHHHHHHHHHHCCcEEEE---e------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCc
Confidence 3444443 3566777778888877643 1 12344556666778999999854 4567888888887653
No 274
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=44.45 E-value=1.2e+02 Score=26.29 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=44.6
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLG 153 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g 153 (834)
+|.+|+. .....+.+.+++.|..|.. . .+....+..++...+|+|++... ..++..+++..++..
T Consensus 11 Livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 11 LIVEDSP---TQAEHLKHILEETGYQTEH---V------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp EEECSCH---HHHHHHHHHHHTTTCEEEE---E------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEE---e------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 3444443 4567788888888877642 1 23355677777788999999854 456788888888764
No 275
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=44.05 E-value=1.1e+02 Score=32.39 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=62.9
Q ss_pred HHHHHHHHHH-cCCeEEEEEEEcCCcccc--hHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEE
Q 003275 60 MHAVADLVEY-YGWREVIAIFVDDDYGRN--GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH 136 (834)
Q Consensus 60 ~~aia~ll~~-~~W~~v~iI~~d~~~g~~--~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 136 (834)
.....++.+. ..=++|+|+| ++.||.. .++.+.+.+.+.|+++........ ...++...+..+.+ ++.+++.
T Consensus 252 i~~Y~~w~~~~~~~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~--~~~~~s~i~~~i~~--~~~ivlG 326 (410)
T 4dik_A 252 LNHYVSVAKGDPKKGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDE--ERPAISEILKDIPD--SEALIFG 326 (410)
T ss_dssp HHHHHHHHHTCCCTTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSS--CCCCHHHHHHHSTT--CSEEEEE
T ss_pred HHHHHHhhcccccccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccC--CCCCHHHHHHHHHh--CCeEEEE
Confidence 3444444432 2334788888 6677754 578999999999998765443432 22466667777644 5677776
Q ss_pred eCh------hhHHHHHHHHHhCCCCCCCeEEEEeCCCc
Q 003275 137 VNP------DTGLTIFSVAKSLGMTAGSYVWIATDWLP 168 (834)
Q Consensus 137 ~~~------~~~~~i~~~a~~~g~~~~~~vwi~~~~~~ 168 (834)
+.. +....++.........++.-..+.+-+|.
T Consensus 327 spT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 327 VSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp ECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred eCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEECCCCC
Confidence 543 34455666666666544444555665554
No 276
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=44.05 E-value=42 Score=33.56 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=53.7
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhh
Q 003275 64 ADLVEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT 141 (834)
Q Consensus 64 a~ll~~~~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~ 141 (834)
|+-+..-.=+.|++|..+ +.|....+..+.+++++.|..+.....- .+.......++.+...+.|.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID---APPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC---STTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 333433344668888754 5677888999999999999987653322 23345567788888889999988765433
Q ss_pred HHHHHHHHHhCCC
Q 003275 142 GLTIFSVAKSLGM 154 (834)
Q Consensus 142 ~~~i~~~a~~~g~ 154 (834)
....++.+.+ |.
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2215566666 64
No 277
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=43.46 E-value=30 Score=34.39 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCcc
Q 003275 590 QIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCE 669 (834)
Q Consensus 590 ~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 669 (834)
.+++++||. .+.+|+...-.....||. +.+.+ .+++.....-|.. +.-|-.|++++-......+.++ +
T Consensus 105 ~~~~~~~l~-~~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~a------p~~GlADaIvDivsTG~TLraN---g 172 (289)
T 2vd3_A 105 TIRGPEDIP-RGAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIA------PFIGVADLITDLSSTGTTLRMN---H 172 (289)
T ss_dssp SCCSGGGCC-TTCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGT------TTTTSCSEEEEEESSTHHHHHT---T
T ss_pred CCCCHHHhc-CCCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeec------cCCCcccEEEEEeCChHHHHHC---C
Confidence 455677772 277888888788889995 45554 4565554443432 2227889999877766665555 5
Q ss_pred EEEeCCcccccceEEEEcCCC-cc-hHHHHHHHHhhh
Q 003275 670 FRTVGQEFTKSGWGFAFQRDS-PL-AIDLSTAILQLS 704 (834)
Q Consensus 670 l~~v~~~~~~~~~~~~~~k~s-pl-~~~~~~~i~~l~ 704 (834)
|..++..+.+. -.+...+.+ +. .+.++..+.++.
T Consensus 173 L~~ie~I~~ss-A~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 173 LRVIDTILESS-VKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEEEEEC-EEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred CEEeEEEEeeE-EEEEEccchhhhHHHHHHHHHHHHH
Confidence 77775554444 445555554 32 245666665554
No 278
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=43.08 E-value=46 Score=24.42 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 003275 749 GIACFLALIFFFCR 762 (834)
Q Consensus 749 ~~g~~lal~vf~~e 762 (834)
++|-++++++|+.-
T Consensus 13 vlGg~~~lll~~gl 26 (70)
T 2klu_A 13 VLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44444455544443
No 279
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=42.86 E-value=36 Score=33.93 Aligned_cols=81 Identities=11% Similarity=0.013 Sum_probs=56.9
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a 149 (834)
.+|++|..+ +.|.......+.+++++.|..+.....-.. .+.......++.+...+.|.||+... .......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 357777654 567888899999999999999876432111 13455567788888888998887644 44446677788
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 87775
No 280
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=42.81 E-value=40 Score=33.34 Aligned_cols=79 Identities=4% Similarity=-0.025 Sum_probs=54.2
Q ss_pred CeEEEEEEEc-------CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHH
Q 003275 72 WREVIAIFVD-------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 144 (834)
Q Consensus 72 W~~v~iI~~d-------~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~ 144 (834)
=+.|++|..+ +.|.......+.+++++.|..+... ....+.......++.+...+.|.||+...... ..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~ 83 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-DR 83 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CH
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hH
Confidence 3568888765 5677788999999999999987652 22222344566777788888999888654322 24
Q ss_pred HHHHHHhCCC
Q 003275 145 IFSVAKSLGM 154 (834)
Q Consensus 145 i~~~a~~~g~ 154 (834)
.++.+.+.|.
T Consensus 84 ~~~~l~~~~i 93 (292)
T 3k4h_A 84 IIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 6667777675
No 281
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=42.80 E-value=39 Score=34.36 Aligned_cols=90 Identities=11% Similarity=-0.057 Sum_probs=55.1
Q ss_pred ccCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCC
Q 003275 588 TSQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 667 (834)
Q Consensus 588 ~~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 667 (834)
..+|++++||. |++|.+..+......++ .++.. .++. ...|...+|++ |.+|+.....+.+...--.+-
T Consensus 129 ~~pI~s~~Dlk--G~KiR~~~~~~~~~~~~-~lGa~---pv~m-~~~Evy~ALq~----G~VDg~~~~~~~~~~~~~~ev 197 (316)
T 2vpn_A 129 DEPITSPEDFD--NKKIRTMTNPLLAETYK-AFGAT---PTPL-PWGEVYGGLQT----GIIDGQENPIFWIESGGLYEV 197 (316)
T ss_dssp SSCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCE---EEEC-CGGGHHHHHHH----TSCSEEEEEHHHHHHTTGGGT
T ss_pred CCCCCChHHhC--CCEEEeCCCHHHHHHHH-HcCCe---eeec-CHHHHHHHHHc----CCcceeeCCHHHHHhcCHHHh
Confidence 36899999997 99998876655555664 45533 3333 56789999999 899998876544322111112
Q ss_pred ccEEEeCCcccccceEEEEcCC
Q 003275 668 CEFRTVGQEFTKSGWGFAFQRD 689 (834)
Q Consensus 668 ~~l~~v~~~~~~~~~~~~~~k~ 689 (834)
.++....... .....+++.+.
T Consensus 198 ~~y~~~~~~~-~~~~~~~~n~~ 218 (316)
T 2vpn_A 198 SPNLTFTSHG-WFTTAMMANQD 218 (316)
T ss_dssp CCEEEECCCC-EEEEEEEEEHH
T ss_pred hhhheecccc-ccceEEEEcHH
Confidence 3444333222 23455666654
No 282
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=42.77 E-value=1e+02 Score=30.33 Aligned_cols=87 Identities=16% Similarity=0.022 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-- 138 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-- 138 (834)
..+|.-....|-..+.++. |..|..+..+.+...-+..++.|.....+- +.. ++.+.+..++|.|++.+.
T Consensus 82 ~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~---d~~----qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF---DPY----QVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC---STH----HHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC---CHH----HHHHHHHcCCCEEEEccccc
Confidence 5567777788989998777 444544677777766666677776544332 112 467778899999999863
Q ss_pred -hhhHHHHHHHHHhCCCC
Q 003275 139 -PDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 139 -~~~~~~i~~~a~~~g~~ 155 (834)
..+...++..++++||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 45678899999999974
No 283
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=42.74 E-value=28 Score=34.61 Aligned_cols=84 Identities=5% Similarity=-0.082 Sum_probs=52.8
Q ss_pred HHHcCCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHH
Q 003275 67 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 144 (834)
Q Consensus 67 l~~~~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~ 144 (834)
+..-.=+.|++|..+ +.|.....+.+.+++++.|..+..... ..+.......++.+...+.|.||+.........
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~ 91 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHP 91 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCH
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHH
Confidence 333344678888754 567777889999999999998875322 123344456677777788998888654322223
Q ss_pred HHHHHHhCC
Q 003275 145 IFSVAKSLG 153 (834)
Q Consensus 145 i~~~a~~~g 153 (834)
+++.+.+.|
T Consensus 92 ~~~~~~~~~ 100 (293)
T 2iks_A 92 FYQRWANDP 100 (293)
T ss_dssp HHHTTTTSS
T ss_pred HHHHHHhCC
Confidence 455555444
No 284
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=42.43 E-value=61 Score=31.60 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP- 139 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~- 139 (834)
..+|.-.... -.-+.+++ |..|..+..+.|...-+..++.|..+..+- +.+ ++.+.+..++|+|.+.+..
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a~l 134 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEecccC
Confidence 3444444443 45555555 667777888888877666678777555442 223 4666888999999998754
Q ss_pred --hhHHHHHHHHHhCCCC
Q 003275 140 --DTGLTIFSVAKSLGMT 155 (834)
Q Consensus 140 --~~~~~i~~~a~~~g~~ 155 (834)
.....+++.|+++||.
T Consensus 135 ~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 135 TAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp CHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 5778899999999874
No 285
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=42.34 E-value=37 Score=34.36 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=54.6
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a 149 (834)
++|+++.. ++.|.....+.+.+++++.|.++.... +...+...-...++.+...+.+.||+... .......++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 46777764 356777788899999999998876421 22223344456677777788999888654 33346677888
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
++.|.
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 87774
No 286
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.65 E-value=30 Score=34.67 Aligned_cols=87 Identities=7% Similarity=-0.028 Sum_probs=55.0
Q ss_pred HHHHHHcCCeEEEEEEEc-------CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEE
Q 003275 64 ADLVEYYGWREVIAIFVD-------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH 136 (834)
Q Consensus 64 a~ll~~~~W~~v~iI~~d-------~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 136 (834)
|+-+..-.-+.|++|..+ +.|....+..+.+++++.|..+... ....+.......++.+...+.|.||+.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 334444455788888766 4577788899999999999987652 222222344667778888899998886
Q ss_pred eChhhHHHHHHHHHhCCC
Q 003275 137 VNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 137 ~~~~~~~~i~~~a~~~g~ 154 (834)
..... ...++.+.+.|.
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 54322 245666777664
No 287
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=41.51 E-value=85 Score=33.16 Aligned_cols=83 Identities=8% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHHHcCCeEEEEEEEcCCccc-chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--h
Q 003275 63 VADLVEYYGWREVIAIFVDDDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--P 139 (834)
Q Consensus 63 ia~ll~~~~W~~v~iI~~d~~~g~-~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~ 139 (834)
+.++++ +| +++.+|+.+..... ...+.+.+.++ |+++..-....++.+.+.+...+..+++.++|+||-.+. .
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455566 77 89888875442332 35777888886 776543333444446678888888888889999997654 4
Q ss_pred hhHHHHHHHH
Q 003275 140 DTGLTIFSVA 149 (834)
Q Consensus 140 ~~~~~i~~~a 149 (834)
-|+.+++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 288
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=40.99 E-value=59 Score=29.32 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
++.+..+.++++-+++. |.+|........+.+.+.+.-.|+++.. + +.++....+.+-+..+.+++++.-++
T Consensus 15 GQV~t~W~k~~~~~~Ii-VvnD~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~p 86 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRII-ICNDDVFNDEVRRTLLRQAAPPGMKVNV---V----SLEKAVAVYHNPQYQDETVFYLFTNP 86 (164)
T ss_dssp HHHHHHHHHHHTCSEEE-EECHHHHTCHHHHHHHHHTCCTTCEEEE---E----CHHHHHHHHTCGGGTTCEEEEEESSH
T ss_pred hhheeeeccccCCCEEE-EeCccccCCHHHHHHHHhcCCCCCeEEE---E----EHHHHHHHHhcccCCCceEEEEECCH
Confidence 56778899999999975 5556555556777777777777888764 2 23444555555444677899999999
Q ss_pred hhHHHHHH
Q 003275 140 DTGLTIFS 147 (834)
Q Consensus 140 ~~~~~i~~ 147 (834)
.++..+++
T Consensus 87 ~d~~~lve 94 (164)
T 1nrz_A 87 HDVLTMVR 94 (164)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988753
No 289
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=40.96 E-value=58 Score=32.23 Aligned_cols=78 Identities=13% Similarity=-0.092 Sum_probs=52.6
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS---DQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 568888754 567778889999999999998765321 223344556777777788998888654222 33455666
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 6664
No 290
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=40.88 E-value=1.1e+02 Score=25.15 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=46.7
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe--ChhhHHHHHHHHHhCCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--~~~~~~~i~~~a~~~g~ 154 (834)
+|.+|+. .....+...+++.|..+.. . .+....+..++...+++|++.. ...++..+++..++...
T Consensus 6 Livdd~~---~~~~~l~~~l~~~g~~v~~---~------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 6 LLVDDSA---VLRKIVSFNLKKEGYEVIE---A------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEE 73 (122)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---E------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTT
T ss_pred EEEeCCH---HHHHHHHHHHHHCCcEEEE---e------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhccc
Confidence 4454443 3556677778888877642 1 1234566777778899999874 34567888888876543
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
...-.+.+.++
T Consensus 74 ~~~~pii~~s~ 84 (122)
T 3gl9_A 74 WKRIPVIVLTA 84 (122)
T ss_dssp TTTSCEEEEES
T ss_pred ccCCCEEEEec
Confidence 22223444443
No 291
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=40.69 E-value=59 Score=32.20 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=42.7
Q ss_pred eeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCceeeEEecceeeeceEEEEEec
Q 003275 401 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 480 (834)
Q Consensus 401 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~~~vdfs~p~~~~~~~~vv~~ 480 (834)
.+...++..+.+..+ .+.+++.. .+.+.++.+|++|+++........ .+ -+.|+....++++++.
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~~~~~~~---~l-~~~~L~~~~~~~v~~~ 170 (306)
T 3hhg_A 106 HLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRAGELDDS---GL-RARHLFDSRFRVIASP 170 (306)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEESCCCCCS---SC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEeCCCCCC---Ce-EEEEeeeeEEEEEECH
Confidence 455778888888876 45555542 122456789999999875433322 12 2467777888888875
Q ss_pred CC
Q 003275 481 QK 482 (834)
Q Consensus 481 ~~ 482 (834)
..
T Consensus 171 ~~ 172 (306)
T 3hhg_A 171 EY 172 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 292
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=40.66 E-value=43 Score=32.73 Aligned_cols=80 Identities=6% Similarity=0.029 Sum_probs=55.2
Q ss_pred EEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCC-ceEEEEEeC-hhhHHHHHHHH
Q 003275 74 EVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME-SRVFVVHVN-PDTGLTIFSVA 149 (834)
Q Consensus 74 ~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivl~~~-~~~~~~i~~~a 149 (834)
+|++|.. ++.|.....+.+.+++++.|.++.....-. ..+.......++.+.+.+ .|.||+... .......++.+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 4677764 356777889999999999999887542111 123344556677777777 999888763 34556677788
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87775
No 293
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=40.40 E-value=9.3 Score=38.67 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=45.0
Q ss_pred cchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceeeEE
Q 003275 530 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSIL 582 (834)
Q Consensus 530 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 582 (834)
-++..++||++.++.-.| .-.|.+..+|++.+++.++++.+.....+++.+.+
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999997664 66899999999999999999999888888776543
No 294
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=39.45 E-value=60 Score=32.19 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=53.6
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~i~~~a 149 (834)
+.|+++.. ++.|.....+.+.+++++.|.++.... +...+.......++++...+.+.||+.... ......++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 56777764 456777889999999999998876421 112233445566777777889988886543 3334566777
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 295
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=39.28 E-value=89 Score=31.71 Aligned_cols=87 Identities=7% Similarity=-0.029 Sum_probs=54.8
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhh
Q 003275 64 ADLVEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT 141 (834)
Q Consensus 64 a~ll~~~~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~ 141 (834)
+.-+..-.-+.|+++..+ +.|....++.+.+++++.|..+..... ..+.......++.+...+.|.||+......
T Consensus 54 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 54 ASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp ---------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred HHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 333333344678888754 567788899999999999998865322 223345567778888889999888764332
Q ss_pred HHHHHHHHHhCCC
Q 003275 142 GLTIFSVAKSLGM 154 (834)
Q Consensus 142 ~~~i~~~a~~~g~ 154 (834)
. ..++.+.+.|.
T Consensus 131 ~-~~~~~l~~~~i 142 (339)
T 3h5o_A 131 E-PFERILSQHAL 142 (339)
T ss_dssp T-THHHHHHHTTC
T ss_pred H-HHHHHHhcCCC
Confidence 2 45556666664
No 296
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=39.01 E-value=48 Score=34.40 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP- 139 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~- 139 (834)
..+.++++.+|.+++.+|+....+ ...+.+.+.+++.++.+ +. .+.++.+.+.+...+..+++.++|+||-.+.+
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-YA-GAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-ec-CCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 346677888999999888865443 34678888888765433 32 33333455778888888888899999887654
Q ss_pred -hhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 003275 140 -DTGLTIFSVAKSLGMTAGSYVWIATDW 166 (834)
Q Consensus 140 -~~~~~i~~~a~~~g~~~~~~vwi~~~~ 166 (834)
-|+.+++... .+ ..++-|.|..
T Consensus 101 viD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 101 TTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred HHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 4556665432 23 4566666653
No 297
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=38.98 E-value=51 Score=29.76 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
++.+..+.++++-..+. |.+|........+.+...+.-.|+++.. + +.++....+.+-+..+.++++++-++
T Consensus 18 GQV~t~W~~~~~~~~Ii-VvnD~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~p 89 (165)
T 1vsq_C 18 GQVATRWTKETNVSRII-VVSDEVAADTVRKTLLTQVAPPGVTAHV---V----DVAKMIRVYNNPKYAGERVMLLFTNP 89 (165)
T ss_dssp TTHHHHHHHHTTCSEEE-EECHHHHTCHHHHHHHHHTCCTTCEEEE---E----CHHHHHHHHTCGGGTTCEEEEEESSH
T ss_pred hheeeeeccccCCCEEE-EeCccccCCHHHHHHHHhcCCCCCeEEE---E----EHHHHHHHHhccccCCcEEEEEECCH
Confidence 45677899999999975 5556555556777777777777888764 2 23444555555444677899999999
Q ss_pred hhHHHHHH
Q 003275 140 DTGLTIFS 147 (834)
Q Consensus 140 ~~~~~i~~ 147 (834)
.++..+++
T Consensus 90 ~d~~~lve 97 (165)
T 1vsq_C 90 TDVERLVE 97 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988864
No 298
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=38.19 E-value=1e+02 Score=31.30 Aligned_cols=78 Identities=6% Similarity=-0.026 Sum_probs=54.7
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|+++..+ +.|....++.+.+++++.|..+..... ..+.......++.+...+.|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 468888754 567788899999999999998865322 1233455667788888889998887543332 5566667
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 6664
No 299
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=37.94 E-value=12 Score=22.02 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=14.3
Q ss_pred CcchhhHHHHHHHHhhcc
Q 003275 529 SQQLVTIFWFSFSTMFFS 546 (834)
Q Consensus 529 ~~~~~~~~~~~~~~l~~~ 546 (834)
...+..++||+|++++..
T Consensus 6 ~~~l~aa~wF~WGvllns 23 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheec
Confidence 345788999999999854
No 300
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=37.67 E-value=87 Score=29.80 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEE
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKIS 104 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~ 104 (834)
++.++-+...+-++|+++.... ... ...+.+.+++.|+++.
T Consensus 104 ~a~~~~~~~~~~~rigvlaT~~--T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGTKT--TMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESSTT--TTS-CHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEeCHH--HHh-hhHHHHHHHHCCCEEE
Confidence 4444444445678999987432 212 2356677777888764
No 301
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=37.55 E-value=78 Score=31.94 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCCeeEe--eCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEec---------hhhHHHHhhcCCcc
Q 003275 601 TEPIGVQ--DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE---------LPYIELFMSKTNCE 669 (834)
Q Consensus 601 ~~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~---------~~~~~~~~~~~~~~ 669 (834)
..+|+++ .|+|.+.-..+....+...++++.+.+++++++.+ |++|..+.. ...++.+ .+ +.+
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~tlD~L-~~-~~~ 79 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA----GEADAAMVPIENSVEGGVTATLDAI-AT-GQE 79 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHT----TSCSEEEEEEESCTTCCHHHHHHHT-TS-SSC
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHc----CCCCeeEEEEeecCCCccHHHHHHh-hC-CCC
Confidence 4567876 58877766544322234568899999999999999 777644432 1122332 23 346
Q ss_pred EEEeCCcccccceEEEEcCCCc
Q 003275 670 FRTVGQEFTKSGWGFAFQRDSP 691 (834)
Q Consensus 670 l~~v~~~~~~~~~~~~~~k~sp 691 (834)
+.++++.+.....++...++..
T Consensus 80 l~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 80 LRIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp CEEEEEEEEECCCEEEECTTCC
T ss_pred eEEEEEEEEeeeEEEEcCCCCC
Confidence 8999998888888887766543
No 302
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=37.52 E-value=67 Score=32.67 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=52.4
Q ss_pred eEEEEEEEc---CCcccchHHHHHHHHhcCCcEEEeeecCCC-CCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003275 73 REVIAIFVD---DDYGRNGISVLGDALSKKRAKISYKAPFSP-GASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 148 (834)
Q Consensus 73 ~~v~iI~~d---~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~-~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~ 148 (834)
+.|+++..+ +.|....+..+.+++++.|..+.....-.. ..+.......++.+...+.|.||+..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 468888764 567778889999999999986654321111 0123444566777777889999884333333455666
Q ss_pred HHhCCC
Q 003275 149 AKSLGM 154 (834)
Q Consensus 149 a~~~g~ 154 (834)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 666664
No 303
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=37.14 E-value=67 Score=31.53 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=46.5
Q ss_pred eeHHHHHHHHHhC-CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeec-C--ceeeEEecceeeeceEEEE
Q 003275 402 YCIDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVT-N--RTKLVDFTQPYMESGLVVV 477 (834)
Q Consensus 402 ~~~dll~~l~~~l-~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~-~--r~~~vdfs~p~~~~~~~~v 477 (834)
+.-.+++.+.+.. +.++.+.. ++-.+.+.+|.+|++|+++.+..... + ....+ ...|+....++++
T Consensus 17 ~~~~~~~~F~~~~P~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvv 86 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALI 86 (265)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEE
Confidence 3356677777776 44433433 34678899999999999886543321 0 11111 3688999999999
Q ss_pred EecCC
Q 003275 478 APVQK 482 (834)
Q Consensus 478 v~~~~ 482 (834)
++...
T Consensus 87 v~~~~ 91 (265)
T 4exl_A 87 VNKEV 91 (265)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 98765
No 304
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=36.90 E-value=51 Score=31.91 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=66.5
Q ss_pred CeeEeeCchhhH--H----HHhhhcccccceEecCCHHHHHHHHhcCCCCCceEE-EEechhhHHHHhhcCCccEEEeCC
Q 003275 603 PIGVQDGSFAWN--Y----LVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAA-IVDELPYIELFMSKTNCEFRTVGQ 675 (834)
Q Consensus 603 ~v~~~~~s~~~~--~----l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a-~~~~~~~~~~~~~~~~~~l~~v~~ 675 (834)
+||+..+...+- + +.++.++. -+++.|.+..+-.++|.. |.+|+ ++...+|++.+..+...++..++.
T Consensus 10 kVG~~~~p~~~il~~v~~~l~k~~Gi~-veiv~F~Dy~~pN~AL~~----G~IDaN~fQH~pyL~~~nk~~g~~lv~v~~ 84 (245)
T 3up9_A 10 TVGATPSPHAKILTYINDNLAADAGIK-LDIVEYTDYVQPNTALND----GDLDANFYQTVPYLENAEKQFGYNFEAGEG 84 (245)
T ss_dssp EEEECTTTHHHHHHHHHHHTHHHHTEE-EEEEECSSSHHHHHHHHT----TSCSEEEEEEHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcCCe-EEEEEecCcccHHHHHHc----CCCceeccCCHHHHHHHHHHCCCCEEEEee
Confidence 577776653321 1 21122332 577889999999999999 89997 566789998876653557888876
Q ss_pred cccccceEEEEcCCCcc--------------hHHHHHHHHhhhccccH
Q 003275 676 EFTKSGWGFAFQRDSPL--------------AIDLSTAILQLSENGDL 709 (834)
Q Consensus 676 ~~~~~~~~~~~~k~spl--------------~~~~~~~i~~l~e~G~~ 709 (834)
.+ ..+++++-.|-..+ -..-.++|+-|.+.|++
T Consensus 85 ~~-~~p~giYS~k~ksl~dL~~Ga~IaIPnD~tN~~RaL~lL~~aGLI 131 (245)
T 3up9_A 85 IH-LEPLGVFSNKHKSLDELPDGGTIGIISDTANQSRALELLATQGLV 131 (245)
T ss_dssp CE-ECCCEEECSSCSCGGGCCTTEEEEEECSHHHHHHHHHHHHHTTSE
T ss_pred ec-ccceEEEeCCCCCHHHcCcCCEEEEecCcchHHHHHHHHHHCCCE
Confidence 43 34566664432211 23446889999999987
No 305
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=36.79 E-value=82 Score=30.96 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=56.0
Q ss_pred CCeeEe--eCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEec---------hhhHHHHhhcCCccE
Q 003275 602 EPIGVQ--DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE---------LPYIELFMSKTNCEF 670 (834)
Q Consensus 602 ~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~---------~~~~~~~~~~~~~~l 670 (834)
.+|+++ .|+|.+.-..+.++.....++++.+.+++++++.+ |++|..+.. ...++.+.+. ++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~~---~l 76 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQQ---DV 76 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHTT---SS
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHc----CCCCEEEEEehhcCCCChHHHHHHhhcC---Cc
Confidence 457775 68877766554443222348899999999999999 787755443 1233444332 69
Q ss_pred EEeCCcccccceEEEEcCCC
Q 003275 671 RTVGQEFTKSGWGFAFQRDS 690 (834)
Q Consensus 671 ~~v~~~~~~~~~~~~~~k~s 690 (834)
.++++.+.....++...++.
T Consensus 77 ~I~gE~~l~I~h~Ll~~~g~ 96 (267)
T 2qmw_A 77 FAHGEIRLDINFALYGNGTD 96 (267)
T ss_dssp EEEEEEEEECCEEEECCSSC
T ss_pred EEEEEEEEEeeeEEEecCCC
Confidence 99999888888888877764
No 306
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=36.72 E-value=68 Score=31.54 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=51.7
Q ss_pred EEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHHH
Q 003275 74 EVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVAK 150 (834)
Q Consensus 74 ~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a~ 150 (834)
.|+++..+ +.|....+..+.+++++.|..+..... ..+...-...++.+...+.|.||+... .......++.+.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEAN 79 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHH
Confidence 57777753 567778889999999999998765322 122333455677777788998887643 233345667777
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 80 ~~~i 83 (283)
T 2ioy_A 80 SKNI 83 (283)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7674
No 307
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=36.55 E-value=65 Score=33.35 Aligned_cols=76 Identities=7% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CeEEEEEEEc----CCcccchHHHHHHHHhcCC--cEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHH
Q 003275 72 WREVIAIFVD----DDYGRNGISVLGDALSKKR--AKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTI 145 (834)
Q Consensus 72 W~~v~iI~~d----~~~g~~~~~~l~~~l~~~g--~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i 145 (834)
=.+|++|+.+ ..|.....+.+.++.++.| +++.+.+..+. ..+..+.++.+.+.+.|+||..+ ......+
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~---~~d~~~~l~~l~~~g~d~Ii~~g-~~~~~~~ 101 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAE---GADAERSIKRIARAGNKLIFTTS-FGYMDPT 101 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCT---THHHHHHHHHHHHTTCSEEEECS-GGGHHHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCC---HHHHHHHHHHHHHCCCCEEEECC-HHHHHHH
Confidence 3689999863 2466667788888888888 88777665542 25778889999889999877754 3334445
Q ss_pred HHHHHh
Q 003275 146 FSVAKS 151 (834)
Q Consensus 146 ~~~a~~ 151 (834)
.+.|.+
T Consensus 102 ~~vA~~ 107 (356)
T 3s99_A 102 VKVAKK 107 (356)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555553
No 308
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=36.38 E-value=88 Score=28.24 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=48.0
Q ss_pred cCCeEEEEEEEcCCccc---chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeC
Q 003275 70 YGWREVIAIFVDDDYGR---NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVN 138 (834)
Q Consensus 70 ~~W~~v~iI~~d~~~g~---~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~ 138 (834)
|.--++++|..-|+-|+ .....+...+++.|+++.....++. +.+.+...+.+..+ .++|+||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34457888886665443 3457788889999999988777773 34778888888765 36899988764
No 309
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=36.30 E-value=58 Score=32.09 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEe
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLS 33 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is 33 (834)
.++.+|+-+..+..+.++..+-+..++|+|.
T Consensus 64 ~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 64 LNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 4677888777666666677777788899886
No 310
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=36.20 E-value=48 Score=35.62 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--h
Q 003275 62 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--P 139 (834)
Q Consensus 62 aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~ 139 (834)
.+.++++.+|-+++.+|+....+. ...+.+.+.+++.|+++.+ ..+....+.+++......+++ ++|+||-.+. .
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 356677777866888888654433 4678888999989988743 223333445677777777777 8999986655 4
Q ss_pred hhHHHHHHHHHhCCCCCCCeEEEEeC
Q 003275 140 DTGLTIFSVAKSLGMTAGSYVWIATD 165 (834)
Q Consensus 140 ~~~~~i~~~a~~~g~~~~~~vwi~~~ 165 (834)
-|+.+++.. ..| ..++-|.|.
T Consensus 158 iD~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 158 MDSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHHH--hcC---CCEEEEeCC
Confidence 566666542 223 456667765
No 311
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.49 E-value=38 Score=33.58 Aligned_cols=79 Identities=6% Similarity=-0.111 Sum_probs=53.9
Q ss_pred CeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003275 72 WREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 149 (834)
Q Consensus 72 W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a 149 (834)
=+.|+++..+ +.|....+..+.+++++.|..+..... ..+.......++.+...+.|.||+..... ....++.+
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~~ 83 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRTE 83 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHHS
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHHh
Confidence 3678888754 456777889999999999998875432 22335556677888888899988876543 33455555
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 84 ~~~~i 88 (291)
T 3egc_A 84 LPKTF 88 (291)
T ss_dssp SCTTS
T ss_pred hccCC
Confidence 55553
No 312
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.49 E-value=87 Score=28.63 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=46.8
Q ss_pred cCCeEEEEEEEcCC-c------c---cchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003275 70 YGWREVIAIFVDDD-Y------G---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHVN 138 (834)
Q Consensus 70 ~~W~~v~iI~~d~~-~------g---~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~~ 138 (834)
+.--+|++|...|+ + | ......+...+++.|.++.....++. +.+++...+.+..+. ++|+||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 44456777775442 1 2 34567788899999999988777773 347788888776554 5899988753
No 313
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=35.25 E-value=99 Score=26.08 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=41.8
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSL 152 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~ 152 (834)
+|.+|+. .....+...+++.|..+.. . .+....+..++...+++|++... ..++..++++.++.
T Consensus 10 Livdd~~---~~~~~l~~~l~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 10 LICEDDP---DIARLLNLMLEKGGFDSDM---V------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---E------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred EEEcCCH---HHHHHHHHHHHHCCCeEEE---E------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3444443 4566777888888877532 1 12345566667778999998743 45678888888763
No 314
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=35.24 E-value=60 Score=31.73 Aligned_cols=76 Identities=5% Similarity=-0.058 Sum_probs=52.0
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHH-HH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFS-VA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~-~a 149 (834)
+.|+++..+ +.|.....+.+.+++++.|..+..... ..+.......++.+...+.|.||+.... ...++ .+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~l 82 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENTL 82 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHHH
Confidence 567888754 567778899999999999998765322 2233455677788888889999987632 33466 66
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|+
T Consensus 83 ~~~~i 87 (277)
T 3e61_A 83 TDHHI 87 (277)
T ss_dssp HHC-C
T ss_pred HcCCC
Confidence 76664
No 315
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.16 E-value=1.1e+02 Score=23.87 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=48.2
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHh
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA 125 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l 125 (834)
..+.-..-+|...+.....+++..|-+-..+||..| ++.++.|..+.+.+|.++.. + .+++|+..-|.++
T Consensus 51 ativvvvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrt---v---tspddfkkslerl 120 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRT---V---TSPDDFKKSLERL 120 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEE---E---SSHHHHHHHHHHH
T ss_pred CeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEE---e---cChHHHHHHHHHH
Confidence 455666677888888888888888887777777544 35678888888888877643 1 2346666655554
No 316
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=35.15 E-value=83 Score=30.60 Aligned_cols=79 Identities=4% Similarity=-0.009 Sum_probs=52.3
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~i~~~a 149 (834)
+.|+++..+ +.|....+..+.++++++|..+..... ..+...-...++.+...+.|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467777754 567778889999999999988765322 1222334556777777889988886433 2333556677
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 317
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=34.94 E-value=47 Score=32.90 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEe
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLS 33 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is 33 (834)
.++.+|+-+..+..+.++..+-+..++|+|.
T Consensus 73 ~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 73 QNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 4677788776666666667777778888886
No 318
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.35 E-value=63 Score=31.88 Aligned_cols=79 Identities=4% Similarity=0.003 Sum_probs=50.9
Q ss_pred CeEEEEEEEc--C--CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHH
Q 003275 72 WREVIAIFVD--D--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFS 147 (834)
Q Consensus 72 W~~v~iI~~d--~--~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~ 147 (834)
=+.|++|..+ + .|....+..+.+++++.|..+.....-. +.......+..+...+.|.||+...... ...++
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 83 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH---AKDSMVPIRYILETGSADGVIISKIEPN-DPRVR 83 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS---GGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHHH
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc---chhHHHHHHHHHHcCCccEEEEecCCCC-cHHHH
Confidence 3678888764 2 6777889999999999999887542221 1222344445566678898888754322 24566
Q ss_pred HHHhCCC
Q 003275 148 VAKSLGM 154 (834)
Q Consensus 148 ~a~~~g~ 154 (834)
.+.+.|+
T Consensus 84 ~l~~~~i 90 (288)
T 3gv0_A 84 FMTERNM 90 (288)
T ss_dssp HHHHTTC
T ss_pred HHhhCCC
Confidence 6676664
No 319
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=34.24 E-value=66 Score=29.69 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=46.2
Q ss_pred CeEEEEEEEcCC--cc--cchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 72 WREVIAIFVDDD--YG--RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 72 W~~v~iI~~d~~--~g--~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
--+|++|..-|+ .| ......+...+++.|.++.....++. +.+.+...+.+..+.++|+||..+.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 356777765433 12 34567888899999999988888873 3467888888765467899988753
No 320
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.03 E-value=1.9e+02 Score=23.57 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=48.3
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe--ChhhHHHHHHHHHhCCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--~~~~~~~i~~~a~~~g~ 154 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..+++..+++|++.. ...++..++++.++...
T Consensus 7 livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 7 LIVEDYQ---AAAETFKELLEMLGFQADY---V------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPM 74 (127)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTEEEEE---E------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCC
T ss_pred EEEcCCH---HHHHHHHHHHHHcCCCEEE---E------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhc
Confidence 4444443 3567778888888876543 1 1234556666677899999985 35578888988888632
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
...-.+.+.++
T Consensus 75 ~~~~~ii~~s~ 85 (127)
T 3i42_A 75 EKTSKFVAVSG 85 (127)
T ss_dssp SSCCEEEEEEC
T ss_pred cCCCCEEEEEC
Confidence 22333445544
No 321
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=33.81 E-value=77 Score=28.47 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=44.9
Q ss_pred EEEEEEEcCC--cc---cchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003275 74 EVIAIFVDDD--YG---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHVN 138 (834)
Q Consensus 74 ~v~iI~~d~~--~g---~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~~ 138 (834)
++++|..-|+ .| ......+...+++.|.++.....++. +.+.+...+.+..+. ++|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5666664433 12 24567888999999999988877873 347788888887654 6899988754
No 322
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=33.62 E-value=2.5e+02 Score=24.94 Aligned_cols=93 Identities=3% Similarity=-0.136 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecC--CC--CCChHHHHHHHHHhh-cCCceEEEE
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPF--SP--GASRSAINSLLVGAN-LMESRVFVV 135 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~--~~--~~~~~~~~~~l~~l~-~~~~~vivl 135 (834)
..+.+.+..+|--..+..|.+ ..+......+.+++...|+++...... +. ..+..|+.=.+.-+. ....|.+|+
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 345555555553333445532 223356678889999999988754322 11 112234333333322 245688888
Q ss_pred EeChhhHHHHHHHHHhC-CC
Q 003275 136 HVNPDTGLTIFSVAKSL-GM 154 (834)
Q Consensus 136 ~~~~~~~~~i~~~a~~~-g~ 154 (834)
.....+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999985 74
No 323
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=33.40 E-value=3.5e+02 Score=26.42 Aligned_cols=72 Identities=14% Similarity=-0.008 Sum_probs=43.5
Q ss_pred HHHHHHHH---Hh-CCCCcCEEEEecCCCCCCCChHHHHHHHHh-C-cccEEeeeeeeecC---ceeeEEecceeeeceE
Q 003275 404 IDVFEAAV---NL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-N-KFDAAVGDITIVTN---RTKLVDFTQPYMESGL 474 (834)
Q Consensus 404 ~dll~~l~---~~-l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~-g-~~D~~~~~~~i~~~---r~~~vdfs~p~~~~~~ 474 (834)
-++++.+. ++ .|.++.+.... ++-..++.+|.. | .+|+.+..-....+ .....+...||....+
T Consensus 20 ~~~~~~F~~~~~~~~gi~V~~~~~~-------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 92 (296)
T 3cg1_A 20 QEVEKEFSEYAERNLGIKVSFQDEA-------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEI 92 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeec-------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccE
Confidence 36777777 66 68775551022 345678888887 5 59998764311111 1112245678888888
Q ss_pred EEEEecCC
Q 003275 475 VVVAPVQK 482 (834)
Q Consensus 475 ~~vv~~~~ 482 (834)
+++++...
T Consensus 93 vi~~~~~~ 100 (296)
T 3cg1_A 93 VIAFTDKS 100 (296)
T ss_dssp EEEECTTS
T ss_pred EEEEcCCC
Confidence 88887654
No 324
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=33.32 E-value=24 Score=35.69 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=38.9
Q ss_pred chhhHHHHHHHHhhccC--CCcccccchh------hhHHHHHHHHHHhhhccccceeeE
Q 003275 531 QLVTIFWFSFSTMFFSH--RENTVSSLGR------VVLIVWLFVVLIINSSYTASLTSI 581 (834)
Q Consensus 531 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R------~~~~~w~~~~lil~~~Yta~L~s~ 581 (834)
++..++|+++.++.-.| .-.|.+..+| ++.++|+++++.+.++-.+.+.+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~ 282 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNW 282 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999997664 4467777776 488899999988887766654443
No 325
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=33.22 E-value=1.1e+02 Score=29.69 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC---
Q 003275 62 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--- 138 (834)
Q Consensus 62 aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--- 138 (834)
.+|++.+ -|-.-+++++ |..|..+..+.|...-+...+.|..+..+- + . -++.+.+..++|+|++.+.
T Consensus 68 ~iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFii---d--~--yQI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 68 EYAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFIV---K--E--SQIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp HHHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCCC---S--H--HHHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeeccccc---c--H--HHHHHHHHcCCCeeehHHhhcC
Confidence 3455444 3666666666 666777888888887776777776554442 2 2 2567777889999998754
Q ss_pred hhhHHHHHHHHHhCCCCC
Q 003275 139 PDTGLTIFSVAKSLGMTA 156 (834)
Q Consensus 139 ~~~~~~i~~~a~~~g~~~ 156 (834)
......+...|.++||..
T Consensus 139 ~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 139 ERELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 467889999999999964
No 326
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=33.05 E-value=51 Score=29.85 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
++.+..+.++++-+++. |.+|........+.+.+.+.-. |+++.. + +.++....+.+-+ .+.+++++.-+
T Consensus 20 GQVat~W~k~~~~~~Ii-VvnD~vA~D~~~k~~lkmA~P~~gvk~~i---~----sve~ai~~~~~~~-~~~~v~il~k~ 90 (168)
T 3eye_A 20 GQVGVTWTSTIGANLLV-VVDDVVANDDIQQKLMGITAETYGFGIRF---F----TIEKTINVIGKAA-PHQKIFLICRT 90 (168)
T ss_dssp THHHHHHHHHHTCSEEE-EECHHHHHSGGGGHHHHHHHHHHTCEEEE---E----CHHHHHHHGGGCC-TTCCEEEEESS
T ss_pred hhhhheeccccCCCEEE-EEcccccCCHHHHHHHHhcCCCCCCeEEE---E----EHHHHHHHHhccc-CCceEEEEECC
Confidence 56677899999999985 5545555555666666666666 888764 2 2244444454433 56789999999
Q ss_pred hhhHHHHHHH
Q 003275 139 PDTGLTIFSV 148 (834)
Q Consensus 139 ~~~~~~i~~~ 148 (834)
+.++..+++.
T Consensus 91 p~d~~~lve~ 100 (168)
T 3eye_A 91 PQTVRKLVEG 100 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999988653
No 327
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=33.01 E-value=1.3e+02 Score=29.69 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEe
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 33 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is 33 (834)
+.++.+|+=+..+.++.++..+-+..++|+|.
T Consensus 67 ~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 67 QFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp TSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 35788888887777666777777778889885
No 328
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=33.00 E-value=76 Score=30.85 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=51.7
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 467777753 557777889999999999988764321 123344556678887888998887754322 24556666
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6564
No 329
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=32.70 E-value=92 Score=30.64 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEee
Q 003275 372 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 451 (834)
Q Consensus 372 ~g~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~ 451 (834)
.+++++||. .+|.. .-+...++..+.+.+|+++++.. . ++ .-+...|.+|++|+...
T Consensus 163 ~~~~I~ig~---~~w~e-----------~~~~~~v~~~~Le~~Gy~Ve~~~--~------~~-~~~~~al~~G~iD~~~e 219 (268)
T 2b4l_A 163 KGDKINLAY---VAWDS-----------EIASTNVIGKVLEDLGYEVTLTQ--V------EA-GPMWTAIATGSADASLS 219 (268)
T ss_dssp SSCEEEEEE---CCCHH-----------HHHHHHHHHHHHHHHTCEEEEEE--C------CT-THHHHHHHHTSSSEEEE
T ss_pred cCcceEEEc---cCccH-----------HHHHHHHHHHHHHHcCCceEEEE--C------Ch-HHHHHHHHCCCCeEEeh
Confidence 356788888 23321 01224456666677898865554 2 22 56678899999999865
Q ss_pred ee
Q 003275 452 DI 453 (834)
Q Consensus 452 ~~ 453 (834)
..
T Consensus 220 ~w 221 (268)
T 2b4l_A 220 AW 221 (268)
T ss_dssp EE
T ss_pred hh
Confidence 43
No 330
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.56 E-value=90 Score=30.75 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=51.0
Q ss_pred CCeEEEEEEE-cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003275 71 GWREVIAIFV-DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 149 (834)
Q Consensus 71 ~W~~v~iI~~-d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a 149 (834)
.-+.|++|.. ++.|....++.+.+++++.|..+.....-. +.. -...++.+...+.|.||+....... ..++.+
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~ 85 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP---SRA-EKVAVQALMRERCEAAILLGTRFDT-DELGAL 85 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT---TBC-HHHHHHHHTTTTEEEEEEETCCCCH-HHHHHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC---CHH-HHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 3467777772 245677788999999999999887644332 112 4567778888889999887644333 455555
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+ |+
T Consensus 86 ~~-~i 89 (289)
T 3k9c_A 86 AD-RV 89 (289)
T ss_dssp HT-TS
T ss_pred Hc-CC
Confidence 54 53
No 331
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=32.54 E-value=45 Score=30.77 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
++.+..+.++++-+.+. |.+|........+.+.+.+.-.|+++.. + +.++....+.+-+..+.+++++.-++
T Consensus 36 GQVat~W~k~~~~~~Ii-VvnD~vA~D~~~k~~lkmA~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~il~k~p 107 (187)
T 3lfj_A 36 GQVMTRWMKGFPEASIV-IIDDELAVDEFMKNIYTMAAPPGVKVKV---F----GVDAALKEWSQKTSVEEKVFLLFKNI 107 (187)
T ss_dssp TTHHHHHHTTCTTCEEE-EECHHHHHCHHHHHHHHHTSCTTCCEEE---E----CHHHHHHHHHSBCSSCEEEEEEESSH
T ss_pred hhhhheeccccCCCEEE-EECccccCCHHHHHHHHHhccCCCeEEE---E----EHHHHHHHHhCCccCCceEEEEECCH
Confidence 56677899999999975 5556555556667776666666777654 2 23444455555444567899999999
Q ss_pred hhHHHHHHH
Q 003275 140 DTGLTIFSV 148 (834)
Q Consensus 140 ~~~~~i~~~ 148 (834)
.++..+++.
T Consensus 108 ~d~~~lve~ 116 (187)
T 3lfj_A 108 DTCKRVMDG 116 (187)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999988653
No 332
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=32.08 E-value=67 Score=32.06 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=45.9
Q ss_pred eEEEEEEEc---C-CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 73 REVIAIFVD---D-DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 73 ~~v~iI~~d---~-~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
..|++|+.+ + .|.....+.+.+++++.|..+....... ...+....++.+.+.+.|.||+.+.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVN---SEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCC---SHHHHHHHHHHHHHTTCCEEEECST
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCC---CHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 468888752 3 6777888999999999999887543322 3345667788888888999988654
No 333
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.86 E-value=1.7e+02 Score=24.46 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=32.7
Q ss_pred chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHhC
Q 003275 87 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSL 152 (834)
Q Consensus 87 ~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~~~ 152 (834)
.....+...+++.|..|.. .. +....+..+....+++|+ +...++..+++..++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADV---TE------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEE---eC------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 3456666777777776542 11 223344455556678877 5555677777777765
No 334
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.81 E-value=1.4e+02 Score=24.99 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=41.8
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLG 153 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g 153 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..+....+|+|++... ..++..+++..++..
T Consensus 8 Livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 8 LIVDDDD---TVAEMLELVLRGAGYEVRR---A------ASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---E------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEE---e------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 3444443 3566777788888877642 1 12344556666678999998854 456788888887643
No 335
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=31.54 E-value=3e+02 Score=25.13 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=44.6
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeee
Q 003275 374 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 453 (834)
Q Consensus 374 ~~lrv~~~~~~~~~p~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~ 453 (834)
++|||+++.. +. ..+-..++..+.+..+ .+++++.. ++.. + ++.+|++|+++..-
T Consensus 19 G~lrI~~~~~--~~------------~~~L~~~l~~f~~~~P-~i~l~l~~-------~~~~--~-~l~~~~~Dlai~~~ 73 (218)
T 2qsx_A 19 ELLVVDVTPS--FA------------SLWLVPNINDFHQRHP-NIRVKILT-------GDGA--V-KNIHGESDLHVRCL 73 (218)
T ss_dssp CEEEEEECHH--HH------------HHTHHHHHHHHHHHCT-TCEEEEEE-------CCSC--C------CCSEEEEEE
T ss_pred CcEEEecCHH--HH------------HHHHHHHHHHHHHHCC-CeEEEEEe-------cCCc--c-cccCCCCCEEEEcC
Confidence 5799999321 11 2445778888888886 45566654 1112 3 78899999998532
Q ss_pred eeecCceeeEEecceeeeceEEEEEecCC
Q 003275 454 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 482 (834)
Q Consensus 454 ~i~~~r~~~vdfs~p~~~~~~~~vv~~~~ 482 (834)
..... .. -+.++....++++++...
T Consensus 74 ~~~~~-~~---~~~~l~~~~~~~v~sp~~ 98 (218)
T 2qsx_A 74 PLSTH-YE---YSQLLCEETLLLIGNTNL 98 (218)
T ss_dssp ECCSC-CS---SEEEEEEEEEEEEEETTC
T ss_pred CCCCC-Cc---cceeccCCCEEEEEChhh
Confidence 00111 11 456778888888876544
No 336
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=31.50 E-value=1.1e+02 Score=31.13 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=54.1
Q ss_pred HHHHHHHcCCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh
Q 003275 63 VADLVEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD 140 (834)
Q Consensus 63 ia~ll~~~~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~ 140 (834)
.|.-+..-.-+.|++|..+ +.|....+..+.+++++.|..+..... ..+.......++.+...+.|.||+.....
T Consensus 61 ~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 61 VAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp ----------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred HHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3333333344678888754 456677889999999999998865422 12334456677778788899988875433
Q ss_pred hHHHHHHHHHhCCC
Q 003275 141 TGLTIFSVAKSLGM 154 (834)
Q Consensus 141 ~~~~i~~~a~~~g~ 154 (834)
. ...++.+.+.|+
T Consensus 138 ~-~~~~~~l~~~~i 150 (355)
T 3e3m_A 138 T-EQTIRLLQRASI 150 (355)
T ss_dssp C-HHHHHHHHHCCS
T ss_pred C-HHHHHHHHhCCC
Confidence 3 345666677664
No 337
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=31.30 E-value=89 Score=31.22 Aligned_cols=79 Identities=10% Similarity=-0.017 Sum_probs=52.0
Q ss_pred EEEEEEEcCC-cccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHHHh
Q 003275 74 EVIAIFVDDD-YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVAKS 151 (834)
Q Consensus 74 ~v~iI~~d~~-~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~i~~~a~~ 151 (834)
+|++|..+.. |.......+.+++++.|..+.... +...+.......++.+...+.|.||+... .......++.+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 4667764322 777788899999999999876532 11223344556677777788998888654 3334456777777
Q ss_pred CCC
Q 003275 152 LGM 154 (834)
Q Consensus 152 ~g~ 154 (834)
.|.
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 338
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=31.09 E-value=1.2e+02 Score=30.52 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=45.6
Q ss_pred eEEEEEEE----cC-CcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 73 REVIAIFV----DD-DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 73 ~~v~iI~~----d~-~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
..|++|+. ++ .|.....+.+.+++++.|..+...... +..+....++.+.+.+.|.||+.+.
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~----~~~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAS----TDAEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECC----SGGGHHHHHHHHHHTTCSEEEEEST
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCC----CHHHHHHHHHHHHHcCCCEEEECCh
Confidence 47888885 23 566677888999999999988765442 2244567788888888999998754
No 339
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=31.07 E-value=55 Score=29.46 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
++.+..+.++++-+++. |.+|........+.+...+.-.|+++.. + +.++....+.+-+..+.++++++-++
T Consensus 16 GQV~t~W~~~~~~~~Ii-VvnD~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~p 87 (163)
T 1ble_A 16 GQILTRWIKVHAADRII-VVSDDIAQDEMRKTLILSVAPSNVKASA---V----SVSKMAKAFHSPRYEGVTAMLLFENP 87 (163)
T ss_dssp TTHHHHHHHHHTCSEEE-EECHHHHHCHHHHHHHHTSSCTTSEEEE---E----CHHHHHHHHHCSTTTTCEEEEEESSS
T ss_pred hhheeeeccccCCCEEE-EeCccccCCHHHHHHHHhhCCCCCeEEE---E----EHHHHHHHHhcccCCCceEEEEECCH
Confidence 45677889999999975 5545555555666666666666887654 2 33455555555445677899999999
Q ss_pred hhHHHHHH
Q 003275 140 DTGLTIFS 147 (834)
Q Consensus 140 ~~~~~i~~ 147 (834)
.++..+++
T Consensus 88 ~d~~~lve 95 (163)
T 1ble_A 88 SDIVSLIE 95 (163)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988753
No 340
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=30.25 E-value=40 Score=33.74 Aligned_cols=74 Identities=7% Similarity=0.099 Sum_probs=49.4
Q ss_pred eeeHHHHHHHHHh---C---CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCce--eeEEe-cc-eee
Q 003275 401 GYCIDVFEAAVNL---L---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT--KLVDF-TQ-PYM 470 (834)
Q Consensus 401 G~~~dll~~l~~~---l---~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~--~~vdf-s~-p~~ 470 (834)
.+..+++..+.++ . +.+ +++.. ++...++.+|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~--v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFK--VAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CE--EEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeE--EEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4557888888888 6 544 55554 66889999999999999876432211110 01112 24 888
Q ss_pred eceEEEEEecCCC
Q 003275 471 ESGLVVVAPVQKL 483 (834)
Q Consensus 471 ~~~~~~vv~~~~~ 483 (834)
...+++++|...+
T Consensus 104 ~d~lvlv~~~~hp 116 (294)
T 3cvg_A 104 RDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEECTTCT
T ss_pred eccEEEEecCCCh
Confidence 8999999987764
No 341
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=29.98 E-value=1.1e+02 Score=29.86 Aligned_cols=72 Identities=7% Similarity=-0.110 Sum_probs=48.9
Q ss_pred eeHHHHHHHHHhC-CCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCc---eeeEEecceeeeceEEEE
Q 003275 402 YCIDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNR---TKLVDFTQPYMESGLVVV 477 (834)
Q Consensus 402 ~~~dll~~l~~~l-~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r---~~~vdfs~p~~~~~~~~v 477 (834)
+..++++.+.++. +.+ +.+.. ++-...+.+|.+|++|+++......... ...+ ...|+....++++
T Consensus 17 ~l~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 4466777777776 444 44332 3467889999999999988765544320 1112 3689999999999
Q ss_pred EecCCC
Q 003275 478 APVQKL 483 (834)
Q Consensus 478 v~~~~~ 483 (834)
++...+
T Consensus 87 v~~~~p 92 (264)
T 4ecf_A 87 VNKKVG 92 (264)
T ss_dssp ECTTSS
T ss_pred EcCCCc
Confidence 987653
No 342
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=29.86 E-value=1.1e+02 Score=26.41 Aligned_cols=79 Identities=11% Similarity=-0.051 Sum_probs=46.4
Q ss_pred EEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe--ChhhHHHHHHHHHhCC
Q 003275 76 IAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLG 153 (834)
Q Consensus 76 ~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--~~~~~~~i~~~a~~~g 153 (834)
++|.+|+. .....+...+++.|..++.. . .+-...+..+++..+|+|++.. ..-++..++++.++..
T Consensus 15 ILiVDD~~---~~r~~l~~~L~~~G~~~v~~--a------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 15 ILIVDDFS---TMRRIVKNLLRDLGFNNTQE--A------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp EEEECSCH---HHHHHHHHHHHHTTCCCEEE--E------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEEEeCCH---HHHHHHHHHHHHcCCcEEEE--E------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 45555554 35566777788888653321 1 1223455666667899999874 4557888888887644
Q ss_pred CCCCCeEEEEeC
Q 003275 154 MTAGSYVWIATD 165 (834)
Q Consensus 154 ~~~~~~vwi~~~ 165 (834)
-...-.+.+.|.
T Consensus 84 ~~~~ipvI~lTa 95 (134)
T 3to5_A 84 ELKHLPVLMITA 95 (134)
T ss_dssp TTTTCCEEEEES
T ss_pred CCCCCeEEEEEC
Confidence 322222444443
No 343
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.39 E-value=1.3e+02 Score=29.53 Aligned_cols=76 Identities=7% Similarity=-0.066 Sum_probs=50.6
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|+++.. ++.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 84 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---ESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQNII 84 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHh
Confidence 56888875 3567778889999999999998765422 223344456677777888998888654322 23445554
Q ss_pred hCC
Q 003275 151 SLG 153 (834)
Q Consensus 151 ~~g 153 (834)
.|
T Consensus 85 -~~ 86 (285)
T 3c3k_A 85 -GA 86 (285)
T ss_dssp -TT
T ss_pred -cC
Confidence 45
No 344
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.35 E-value=1.1e+02 Score=27.79 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=36.5
Q ss_pred hHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeC
Q 003275 88 GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVN 138 (834)
Q Consensus 88 ~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~ 138 (834)
.-..|.+.+++.|++|.....++. +.+.+...+.+..+ .++|+|+..+.
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~D--d~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 356788999999999998888873 33667777776554 56899888754
No 345
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=29.29 E-value=4.2e+02 Score=26.09 Aligned_cols=76 Identities=4% Similarity=-0.130 Sum_probs=45.3
Q ss_pred ceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCccEEEeCCcccccceEEEEcCCCcchHHHHHHHHhhhc
Q 003275 626 RLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSE 705 (834)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i~~l~e 705 (834)
.+..+.+..+..+.+.+ |++++.+............ ..++.++-+.-.....+++++++++-.+.--+.|.-|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIAS----AEAPFGSVWNGRMTALEQS-GVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHT----TSSCEEEEEHHHHHHHHHT-TCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHc----CCEEEEEeecHHHHHHHhC-CCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 34556677788889988 8888777654443333333 323333222222233478999999976666666666654
Q ss_pred c
Q 003275 706 N 706 (834)
Q Consensus 706 ~ 706 (834)
.
T Consensus 250 ~ 250 (320)
T 4euo_A 250 A 250 (320)
T ss_dssp H
T ss_pred H
Confidence 4
No 346
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=29.24 E-value=67 Score=32.52 Aligned_cols=79 Identities=10% Similarity=-0.068 Sum_probs=52.1
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCC--ceEEEEEeChh-hHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME--SRVFVVHVNPD-TGLTIFS 147 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~-~~~~i~~ 147 (834)
+.|++|.. ++.|.......+.+++++.|..+..... ..+.......++.+...+ .|.||+..... .....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 46777775 3567777889999999999988765422 123344455677777677 89888865433 3335666
Q ss_pred HHHhCCC
Q 003275 148 VAKSLGM 154 (834)
Q Consensus 148 ~a~~~g~ 154 (834)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7766664
No 347
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=29.19 E-value=82 Score=31.37 Aligned_cols=79 Identities=9% Similarity=-0.042 Sum_probs=51.9
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT-GLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~-~~~i~~~a 149 (834)
.+|+++..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 467777753 456677788899999999998765422 123344456677777778898888654332 24566667
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 348
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=29.19 E-value=1.5e+02 Score=29.40 Aligned_cols=77 Identities=10% Similarity=0.008 Sum_probs=54.8
Q ss_pred CCeeEe--eCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEec---------hhhHHHHhhcCCccE
Q 003275 602 EPIGVQ--DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE---------LPYIELFMSKTNCEF 670 (834)
Q Consensus 602 ~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~---------~~~~~~~~~~~~~~l 670 (834)
.+|+++ .|+|.+.-..+.+ .++++.+.+++++++.+ |++|..+.. ...++.+.+ .++
T Consensus 7 ~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~---~~l 74 (283)
T 2qmx_A 7 WLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTE----QKADYAVIPIENSLGGSIHQNYDLLLR---RPV 74 (283)
T ss_dssp CEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHT----TSCSEEEEEEEESSSCBCHHHHHHHHH---SSE
T ss_pred cEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHC----CCCCEEEEeehhcCCCccHHHHHHhhc---CCc
Confidence 457886 6887776654433 57889999999999999 777654443 123444443 369
Q ss_pred EEeCCcccccceEEEEcCCC
Q 003275 671 RTVGQEFTKSGWGFAFQRDS 690 (834)
Q Consensus 671 ~~v~~~~~~~~~~~~~~k~s 690 (834)
.++++.+.....++...++.
T Consensus 75 ~I~gE~~l~I~h~Ll~~~g~ 94 (283)
T 2qmx_A 75 VILAETFVKVEHCLLGLPGA 94 (283)
T ss_dssp EEEEEEEEECCCEEEECSSC
T ss_pred EEEEEEEEeeeeeEecCCCC
Confidence 99999888888888887764
No 349
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.05 E-value=68 Score=31.68 Aligned_cols=78 Identities=5% Similarity=-0.147 Sum_probs=50.8
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHH---HHHHhhcCCceEEEEEeChhhHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINS---LLVGANLMESRVFVVHVNPDTGLTIFS 147 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~---~l~~l~~~~~~vivl~~~~~~~~~i~~ 147 (834)
+.|++|..+ +.|.......+.+++++.|..+..... . .+...... .++.+...+.|.||+...... ...++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 84 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDLD 84 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHHH
Confidence 567777753 557778889999999999998765322 1 12233344 677777788998888654332 34555
Q ss_pred HHHhCCC
Q 003275 148 VAKSLGM 154 (834)
Q Consensus 148 ~a~~~g~ 154 (834)
.+.+.|.
T Consensus 85 ~l~~~~i 91 (290)
T 2rgy_A 85 ELHRMHP 91 (290)
T ss_dssp HHHHHCS
T ss_pred HHhhcCC
Confidence 6666564
No 350
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=28.99 E-value=69 Score=31.74 Aligned_cols=78 Identities=5% Similarity=-0.003 Sum_probs=52.3
Q ss_pred eEEEEEEE-------cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHH
Q 003275 73 REVIAIFV-------DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTI 145 (834)
Q Consensus 73 ~~v~iI~~-------d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i 145 (834)
+.|++|.. ++.|....+..+.+++++.|..+... ....+.......++.+...+.|.||+...... ...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~ 83 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DPI 83 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CHH
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hHH
Confidence 56777772 45677788999999999999987642 22222234456677788888998888644322 245
Q ss_pred HHHHHhCCC
Q 003275 146 FSVAKSLGM 154 (834)
Q Consensus 146 ~~~a~~~g~ 154 (834)
++.+.+.|.
T Consensus 84 ~~~l~~~~i 92 (295)
T 3hcw_A 84 KQMLIDESM 92 (295)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 666666664
No 351
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=28.79 E-value=37 Score=32.47 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHcCCeEEEEEEEcCCcccchHHHHHHHH-hcCCcEEEeee-----cCCCCCChHHHHHHHHHhhcCCceEEEEEeChhh
Q 003275 68 EYYGWREVIAIFVDDDYGRNGISVLGDAL-SKKRAKISYKA-----PFSPGASRSAINSLLVGANLMESRVFVVHVNPDT 141 (834)
Q Consensus 68 ~~~~W~~v~iI~~d~~~g~~~~~~l~~~l-~~~g~~I~~~~-----~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~ 141 (834)
...| ++|+++...... . ..+.+.+ ++.|..+.... .+........+...+.++.+.++|+||+.|..-.
T Consensus 112 ~~~~-~rigVlat~~t~---~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 112 LAYG-RRVGVLNLTEET---P-KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp HTTC-SSEEEECSSSCC---C-HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred HHhC-CeEEEEecCccc---H-HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 3467 899999875432 2 3567788 77777642211 0100001234556667776678999999887543
No 352
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.71 E-value=80 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCc
Q 003275 752 CFLALIFFFCRVCGQFRRFGSE 773 (834)
Q Consensus 752 ~~lal~vf~~e~~~~~~~~~~~ 773 (834)
.+++++++++-.+-.++|++++
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHcCcccCCCcc
Confidence 3445555555544444444443
No 353
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=28.66 E-value=88 Score=30.58 Aligned_cols=68 Identities=7% Similarity=0.020 Sum_probs=47.5
Q ss_pred HHHcCCeEEEEEEEc--CCcccchHHHHHHHHhcCCcE-EEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003275 67 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAK-ISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 137 (834)
Q Consensus 67 l~~~~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~-I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 137 (834)
++.-.-+.|+++..+ +.|.....+.+.+++++.|.. +... ....+...-...++.+...+.|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 334445678888865 567778899999999999998 6542 2122334556677888888999998876
No 354
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.54 E-value=1e+02 Score=31.12 Aligned_cols=78 Identities=10% Similarity=-0.055 Sum_probs=51.8
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|+++.. ++.|.....+.+.+++++.|..+..... ..+.......++.+...+.|.||+....... ..++.+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS---DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC---CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 57888875 3677788899999999999998765321 1122334566777777889988886543222 4555555
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 137 ~~~i 140 (332)
T 2hsg_A 137 KSPV 140 (332)
T ss_dssp TSSS
T ss_pred hCCC
Confidence 5553
No 355
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=28.36 E-value=1.4e+02 Score=29.90 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=51.7
Q ss_pred eEEEEEEEc-CCcccchHHHHHHHHhcC-CcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003275 73 REVIAIFVD-DDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT-GLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d-~~~g~~~~~~l~~~l~~~-g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~-~~~i~~~a 149 (834)
..|+++..+ +.|.......+.+++++. |..+..... ..+.......++.+...+.|.||+...... ....++.+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 83 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEA 83 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 567777754 345556778889999998 988765422 123344456677777788998888754332 34566777
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|.
T Consensus 84 ~~~~i 88 (325)
T 2x7x_A 84 YQKGI 88 (325)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=28.34 E-value=26 Score=33.47 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.1
Q ss_pred CcEEEECCCChhhHHHHHHhhccCCccEEec
Q 003275 4 EVVAAIGPQSSGIAHVISHVVNELNVPLLSF 34 (834)
Q Consensus 4 ~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~ 34 (834)
+|+.|+||.+|.=.-....+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 6889999999998888888999999999984
No 357
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.34 E-value=1.3e+02 Score=25.20 Aligned_cols=63 Identities=5% Similarity=0.006 Sum_probs=43.3
Q ss_pred EEEEcCCcccchHHHHHHHHhc-CCcEEEeeecCCCCCChHHHHHHHHHhhc-CCceEEEEEeC---hhhHHHHHHHHHh
Q 003275 77 AIFVDDDYGRNGISVLGDALSK-KRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVN---PDTGLTIFSVAKS 151 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~-~g~~I~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~---~~~~~~i~~~a~~ 151 (834)
+|.+|+. .....+...+++ .|..|.. . .+....+..+++ ..+++|++... ..++..+++..++
T Consensus 8 livdd~~---~~~~~l~~~L~~~~~~~v~~---~------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 8 LLIDYFE---YEREKTKIIFDNIGEYDFIE---V------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp EEECSCH---HHHHHHHHHHHHHCCCEEEE---E------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred EEEeCCH---HHHHHHHHHHHhccCccEEE---E------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 4444443 356677788887 7877652 1 233556777877 88999999865 4477888888887
No 358
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.22 E-value=89 Score=31.93 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=51.5
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|++|..+ +.|....++.+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 468888754 567778889999999999988765322 123344456677777788998888755433 24556666
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 6664
No 359
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=28.13 E-value=1.8e+02 Score=24.24 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=44.5
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHHHHHhC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP----DTGLTIFSVAKSL 152 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~----~~~~~i~~~a~~~ 152 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..++...+++|++.... .++..+++..++.
T Consensus 10 livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 10 YLVDHQK---DARAALSKLLSPLDVTIQC---F------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKR 77 (136)
T ss_dssp EEECSCH---HHHHHHHHHHTTSSSEEEE---E------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHT
T ss_pred EEEcCCH---HHHHHHHHHHHHCCcEEEE---e------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhC
Confidence 3444443 4567788888888887652 1 233456677777889999998653 4578888888886
Q ss_pred C
Q 003275 153 G 153 (834)
Q Consensus 153 g 153 (834)
+
T Consensus 78 ~ 78 (136)
T 3kto_A 78 G 78 (136)
T ss_dssp T
T ss_pred C
Confidence 5
No 360
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.99 E-value=2.6e+02 Score=23.23 Aligned_cols=77 Identities=14% Similarity=0.057 Sum_probs=45.0
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g~ 154 (834)
+|.+|+. .....+...+++.|..+.. .. +....+..+....+++|++... ..++..+++..++...
T Consensus 7 Livdd~~---~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 7 LVVDDSP---MIVDVFVTMLERGGYRPIT---AF------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPA 74 (138)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTT
T ss_pred EEEeCCH---HHHHHHHHHHHHcCceEEE---eC------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcc
Confidence 4454544 3566777777777877642 11 2234455556677999999864 3467788888877532
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
...-.+.+.++
T Consensus 75 ~~~~~ii~ls~ 85 (138)
T 3c3m_A 75 TRDIPVLMLTA 85 (138)
T ss_dssp TTTSCEEEEES
T ss_pred cCCCCEEEEEC
Confidence 22223444443
No 361
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=27.94 E-value=1.1e+02 Score=27.51 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=43.9
Q ss_pred eEEEEEEEcCCc--c---cchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 73 REVIAIFVDDDY--G---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 73 ~~v~iI~~d~~~--g---~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
.++++|...|+- | ......|...+++.|.++.....++ .+ +.+...+.+..+.++|+||..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 356666654431 2 3456788889999999988777776 24 67888887776557899998753
No 362
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=27.84 E-value=28 Score=35.69 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=46.9
Q ss_pred CcchhhHHHHHHHHhhccC--CCccc--ccchhhhHHHHHHHHHHhhhccccceeeEEEEeec
Q 003275 529 SQQLVTIFWFSFSTMFFSH--RENTV--SSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQL 587 (834)
Q Consensus 529 ~~~~~~~~~~~~~~l~~~~--~~~~~--s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 587 (834)
..++..++||++.++.-.| ...|. ...+|++..+-.++++++.+.-++-+.+-++.+..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3568999999999998665 44665 56799999999999999998888888777666553
No 363
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.67 E-value=2.1e+02 Score=24.39 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=42.5
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLG 153 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g 153 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..++...+++|++... ..++..++++.++..
T Consensus 18 Livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 18 LLVDSQE---VILQRLQQLLSPLPYTLHF---A------RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp EEECSCH---HHHHHHHHHHTTSSCEEEE---E------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred EEECCCH---HHHHHHHHHhcccCcEEEE---E------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 4444443 4567788888888876542 1 12344556666678999999854 456778888887754
No 364
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=27.45 E-value=1.5e+02 Score=30.21 Aligned_cols=65 Identities=3% Similarity=-0.145 Sum_probs=43.8
Q ss_pred CCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003275 71 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 137 (834)
Q Consensus 71 ~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 137 (834)
.-+.|++|..+ +.|....+..+.+++++.|..+.....- ..+.......++.+...+.|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVE--RSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECC--SSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCC--CCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34578888754 4566678889999999999987653221 11123445667777778899888864
No 365
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=27.42 E-value=1.1e+02 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=19.2
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEE
Q 003275 63 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKI 103 (834)
Q Consensus 63 ia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I 103 (834)
.++.+...+-++|+++..... -....+.+.+++.|.++
T Consensus 107 ~~~~a~~~~~~rigvlaT~~T---~~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 107 TAKKVKELGFKKAGLLATTGT---IVSGVYEKEFSKYGVEI 144 (228)
T ss_dssp HHHHHHHTTCSEEEEECCHHH---HHHTHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCeEEEEecHHH---hhhhHHHHHHHHCCCeE
Confidence 333333335677887764421 11134455666667665
No 366
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=27.39 E-value=22 Score=35.59 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=39.4
Q ss_pred CcchhhHHHHHHHHhhccCCC----cccccc----hhhhHHHHHHHHHHhhhccccceeeEEEEee
Q 003275 529 SQQLVTIFWFSFSTMFFSHRE----NTVSSL----GRVVLIVWLFVVLIINSSYTASLTSILTVQQ 586 (834)
Q Consensus 529 ~~~~~~~~~~~~~~l~~~~~~----~~~s~~----~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 586 (834)
..++..++|+.+.++...+-. .|.... .+++..+.++.++++.+.++|-+.+-+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999876522 243332 3566666667789999999999887665533
No 367
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.27 E-value=2.7e+02 Score=23.12 Aligned_cols=64 Identities=17% Similarity=0.042 Sum_probs=40.4
Q ss_pred EEEEcCCcccchHHHHHHHHhc-CCcE-EEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 003275 77 AIFVDDDYGRNGISVLGDALSK-KRAK-ISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSL 152 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~-~g~~-I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~ 152 (834)
+|.+|+. .....+...+++ .|.. +.. . .+....+..++...+++|++... ..++..++++.++.
T Consensus 12 Livdd~~---~~~~~l~~~L~~~~~~~~v~~---~------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 12 LIIEDDK---EFADMLTQFLENLFPYAKIKI---A------YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp EEECSCH---HHHHHHHHHHHHHCTTCEEEE---E------CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred EEEECCH---HHHHHHHHHHHhccCccEEEE---E------CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 4444443 456677777877 7776 332 1 12344555666677999999864 34677888888764
No 368
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.07 E-value=1.2e+02 Score=30.52 Aligned_cols=80 Identities=11% Similarity=-0.088 Sum_probs=52.6
Q ss_pred CCeEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003275 71 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 148 (834)
Q Consensus 71 ~W~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~ 148 (834)
.=+.|+++..+ +.|....+..+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34578888854 567778889999999999998765422 123344456677777788998888653222 234455
Q ss_pred HHhCCC
Q 003275 149 AKSLGM 154 (834)
Q Consensus 149 a~~~g~ 154 (834)
+.+.|.
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 555554
No 369
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.92 E-value=3e+02 Score=23.58 Aligned_cols=85 Identities=11% Similarity=0.146 Sum_probs=52.3
Q ss_pred EEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh----hHHHHHHHH
Q 003275 74 EVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD----TGLTIFSVA 149 (834)
Q Consensus 74 ~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~----~~~~i~~~a 149 (834)
+|.+-....+.-.-+..-+...++..|.+|.+--... + ....+..+++.++++|.+.+... .+..++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~---p---~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS---P---QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE---C---HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC---C---HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 4444444444333446667788888999988643321 2 23455566667899999987543 345567777
Q ss_pred HhCCCCCCCeEEEEeC
Q 003275 150 KSLGMTAGSYVWIATD 165 (834)
Q Consensus 150 ~~~g~~~~~~vwi~~~ 165 (834)
++.|.. .-.+|+...
T Consensus 79 ~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHTTCT-TCEEEEEES
T ss_pred HhcCCC-CCEEEEECC
Confidence 777753 345666654
No 370
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=26.86 E-value=35 Score=33.34 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=50.2
Q ss_pred HHHHHHHHHHH-----HcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCC---CChHHHHHHHHHhhcCC
Q 003275 58 YQMHAVADLVE-----YYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG---ASRSAINSLLVGANLME 129 (834)
Q Consensus 58 ~q~~aia~ll~-----~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~---~~~~~~~~~l~~l~~~~ 129 (834)
..++.+++++. ...-++|.++.. ....+.|.+.|++.|..|.....|... ....++. ..+...+
T Consensus 114 ~~~e~L~~~l~~~~~~~~~~~~vL~~rg-----~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~---~~l~~~~ 185 (254)
T 4es6_A 114 DDSEALLALPAFQDSLRVHDPKVLIMRG-----EGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELL---ARVRAER 185 (254)
T ss_dssp CSHHHHHTCHHHHHHTCSSSCEEEEEEC-----SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHH---HHHHHTT
T ss_pred CCHHHHHHhHhhcccccCCCCEEEEEcC-----CccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHH---HHHHhCC
Confidence 34567777764 334467765553 334556778888899987655444321 1222333 3344455
Q ss_pred ceEEEEEeChhhHHHHHHHHHh
Q 003275 130 SRVFVVHVNPDTGLTIFSVAKS 151 (834)
Q Consensus 130 ~~vivl~~~~~~~~~i~~~a~~ 151 (834)
.|+ |++.++..+..+++.+.+
T Consensus 186 ~d~-v~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 186 LNG-LVVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp CCE-EECCSHHHHHHHHHHHGG
T ss_pred CCE-EEEcCHHHHHHHHHHhhH
Confidence 665 456788888888877653
No 371
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.81 E-value=2.2e+02 Score=23.31 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=42.5
Q ss_pred eEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHH
Q 003275 73 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~ 150 (834)
.+| +|.+|+. .....+...+++.|..+.. . .+....+..++...+|+|++... ..++..++++.+
T Consensus 8 ~~i-livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (130)
T 3eod_A 8 KQI-LIVEDEQ---VFRSLLDSWFSSLGATTVL---A------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIR 74 (130)
T ss_dssp CEE-EEECSCH---HHHHHHHHHHHHTTCEEEE---E------SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHH
T ss_pred CeE-EEEeCCH---HHHHHHHHHHHhCCceEEE---e------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 344 3444443 3566777888888877643 1 12345667777788999998754 345677888888
Q ss_pred hCC
Q 003275 151 SLG 153 (834)
Q Consensus 151 ~~g 153 (834)
+.+
T Consensus 75 ~~~ 77 (130)
T 3eod_A 75 NRG 77 (130)
T ss_dssp HTT
T ss_pred hcC
Confidence 755
No 372
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.74 E-value=79 Score=31.27 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=51.5
Q ss_pred eEEEEEEE------cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003275 73 REVIAIFV------DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIF 146 (834)
Q Consensus 73 ~~v~iI~~------d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~ 146 (834)
+.|++|.. ++.|....+..+.+++++.|..+.....-. . ......++.+...+.|.||+....... ..+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~---~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-G---EKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-T---CCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h---hhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 56888886 345777788999999999999887654322 1 223455666666788888887543322 556
Q ss_pred HHHHhCCC
Q 003275 147 SVAKSLGM 154 (834)
Q Consensus 147 ~~a~~~g~ 154 (834)
+.+.+.|+
T Consensus 82 ~~l~~~~i 89 (294)
T 3qk7_A 82 QYLQKQNF 89 (294)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 66777664
No 373
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=26.60 E-value=1.3e+02 Score=29.86 Aligned_cols=31 Identities=6% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEe
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLS 33 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is 33 (834)
.++.+|+-+..+..+.++..+-+..++|+|.
T Consensus 83 ~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 83 YPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred CCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 4677888877777666777777888999996
No 374
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.53 E-value=53 Score=27.95 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=43.4
Q ss_pred EEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEE--eChhhHHHHHHHHHhCC
Q 003275 76 IAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH--VNPDTGLTIFSVAKSLG 153 (834)
Q Consensus 76 ~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~--~~~~~~~~i~~~a~~~g 153 (834)
++|.+|+.. ....+...+++.|.+|.. . + .+-...+..+++..+|+|++. +..-++..+.++.++.+
T Consensus 11 ILiVdD~~~---~~~~l~~~L~~~G~~v~~----~--a--~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ 79 (123)
T 2lpm_A 11 VLVVEDESM---IAMLIEDTLCELGHEVAA----T--A--SRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERN 79 (123)
T ss_dssp EEEESSSTT---TSHHHHHHHHHHCCCCCB----C--S--CCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTC
T ss_pred EEEEeCCHH---HHHHHHHHHHHCCCEEEE----E--E--CCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCC
Confidence 355555553 455666777777876532 1 1 233456677777889999987 44557788888888755
No 375
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.26 E-value=94 Score=22.02 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 003275 752 CFLALIFFFCRVCGQFRRFGS 772 (834)
Q Consensus 752 ~~lal~vf~~e~~~~~~~~~~ 772 (834)
.+++++++++-.+-.++|++.
T Consensus 24 llL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 24 LLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHcCcccCCCC
Confidence 344555555544444444443
No 376
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.96 E-value=3.4e+02 Score=25.17 Aligned_cols=87 Identities=7% Similarity=0.005 Sum_probs=56.3
Q ss_pred eEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHHH
Q 003275 73 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP----DTGLTIFSV 148 (834)
Q Consensus 73 ~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~----~~~~~i~~~ 148 (834)
.+|.+.....+.-.-+..-+...++.+|.+|.+-- ... .....+..+++.++++|.+.+.. .....+++.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~v---p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VDI---EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SSB---CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CCC---CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 35666666655555567777888899999987522 122 23445556666789999998753 356777778
Q ss_pred HHhCCCCCCCeEEEEeC
Q 003275 149 AKSLGMTAGSYVWIATD 165 (834)
Q Consensus 149 a~~~g~~~~~~vwi~~~ 165 (834)
.++.|....-.+++...
T Consensus 163 l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHTTCGGGCEEEEEST
T ss_pred HHhcCCCCCCeEEEECC
Confidence 88877643345666643
No 377
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.92 E-value=1.9e+02 Score=23.40 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=41.7
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSL 152 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~ 152 (834)
+|.+|+. .....+...+++.|..+.. .. +....+..++...+++|++... ..++..+++..++.
T Consensus 6 livdd~~---~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 6 LVVDDEK---PIADILEFNLRKEGYEVHC---AH------DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred EEEECCH---HHHHHHHHHHHhCCEEEEE---eC------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4444443 3566777788888877643 11 2244566677788999999854 45677888887753
No 378
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=25.84 E-value=2.2e+02 Score=25.07 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=43.2
Q ss_pred eEEEEEEEcCCccc--chHHHHHHHHhcCCcEEEeeecCCCCCChH-HHHHHHHHhhcCCceEEEEEeChh--h--HHHH
Q 003275 73 REVIAIFVDDDYGR--NGISVLGDALSKKRAKISYKAPFSPGASRS-AINSLLVGANLMESRVFVVHVNPD--T--GLTI 145 (834)
Q Consensus 73 ~~v~iI~~d~~~g~--~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~-~~~~~l~~l~~~~~~vivl~~~~~--~--~~~i 145 (834)
+++.|+| .+.+|. ..++.+.+.+++.|+++.... +. +. +....+..+. +.|.||+.++.- . ...+
T Consensus 5 ~kv~IvY-~S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFY-VSEYGYSDRLAQAIINGITKTGVGVDVVD-LG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEE-CTTSTTHHHHHHHHHHHHHHTTCEEEEEE-SS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEE-ECCChHHHHHHHHHHHHHHHCCCeEEEEE-Cc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 5788888 444555 447788888888888765322 22 12 3344445553 357788775432 1 1356
Q ss_pred HHHHHhCCCCC
Q 003275 146 FSVAKSLGMTA 156 (834)
Q Consensus 146 ~~~a~~~g~~~ 156 (834)
+.......+.+
T Consensus 77 l~~l~~~~~~~ 87 (159)
T 3fni_A 77 LSTILGSVNEK 87 (159)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHhhcccC
Confidence 66555544433
No 379
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=25.84 E-value=1.2e+02 Score=30.08 Aligned_cols=31 Identities=6% Similarity=0.148 Sum_probs=22.7
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEe
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLS 33 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is 33 (834)
.++.+|+=+..+..+.++..+-+..++|+|.
T Consensus 83 ~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 83 FDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 4677777776666655666777778889886
No 380
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.79 E-value=2.9e+02 Score=22.98 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=42.5
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe-ChhhHHHHHHHHHhCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV-NPDTGLTIFSVAKSLG 153 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~i~~~a~~~g 153 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..+....+++|++.. ...++..+++..++..
T Consensus 8 Livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 8 MVVDESR---ITFLAVKNALEKDGFNVIW---A------KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp EEECSCH---HHHHHHHHHHGGGTCEEEE---E------SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred EEEeCCH---HHHHHHHHHHHhCCCEEEE---E------CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 4444443 4567788888888887652 1 2234566777778899999986 2235667777777654
No 381
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=25.52 E-value=2.9e+02 Score=23.51 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=39.7
Q ss_pred chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 003275 87 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLG 153 (834)
Q Consensus 87 ~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g 153 (834)
.....+...+++.|..|.. . .+....+..++...+++|++... ..++..+++..++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNIIT---F------TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE---E------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEE---e------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 4567788888888877652 1 12345667777778999999854 346777888877654
No 382
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=25.51 E-value=52 Score=32.39 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=51.1
Q ss_pred eEEEEEEEc----CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHH
Q 003275 73 REVIAIFVD----DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFS 147 (834)
Q Consensus 73 ~~v~iI~~d----~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~i~~ 147 (834)
+.|+++..+ +.|.......+.+++++.|..+.....- ...+.......++.+...+.|.||+.... ......++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPE-KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCC-CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 467777653 5677788899999999999887653211 01233444566777777889988886543 33234555
Q ss_pred HHHhCC
Q 003275 148 VAKSLG 153 (834)
Q Consensus 148 ~a~~~g 153 (834)
.+.+.|
T Consensus 85 ~~~~~~ 90 (289)
T 3brs_A 85 EIKDAG 90 (289)
T ss_dssp TTGGGT
T ss_pred HHHHCC
Confidence 555545
No 383
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.49 E-value=2.6e+02 Score=22.87 Aligned_cols=76 Identities=17% Similarity=-0.020 Sum_probs=45.4
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g~ 154 (834)
+|.+|+. .....+...++ .|..+.. . .+....+..+.+..+++|++... ..++..++++.++...
T Consensus 8 livdd~~---~~~~~l~~~l~-~~~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 74 (133)
T 3nhm_A 8 LIVENSW---TMRETLRLLLS-GEFDCTT---A------ADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPT 74 (133)
T ss_dssp EEECSCH---HHHHHHHHHHT-TTSEEEE---E------SSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred EEEcCCH---HHHHHHHHHHh-CCcEEEE---E------CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCc
Confidence 4444443 34566667776 6766542 1 22344566666678999999754 4568888888888643
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
...-.+.+.++
T Consensus 75 ~~~~pii~~s~ 85 (133)
T 3nhm_A 75 LKHIPVIFVSG 85 (133)
T ss_dssp TTTCCEEEEES
T ss_pred cCCCCEEEEeC
Confidence 22233444443
No 384
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.47 E-value=69 Score=31.58 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=45.9
Q ss_pred eEEEEEEE--cCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003275 73 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 150 (834)
Q Consensus 73 ~~v~iI~~--d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~~~a~ 150 (834)
+.|+++.. ++.|.......+.+++++.|..+... +....+.......++.+...+.|.||+...... ...++.+.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 85 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQLLQ 85 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C----------CHHHHHHSSCCSEEEEESCC-----CHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHHHH
Confidence 56788875 45677788899999999999987653 011111123345667777788998888754322 23455565
Q ss_pred hCCC
Q 003275 151 SLGM 154 (834)
Q Consensus 151 ~~g~ 154 (834)
+.|.
T Consensus 86 ~~~i 89 (290)
T 3clk_A 86 SSDV 89 (290)
T ss_dssp CC--
T ss_pred hCCC
Confidence 5553
No 385
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=25.39 E-value=1.5e+02 Score=28.80 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=45.4
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
+.|+++..+ +.|.......+.+++++.|..+..... ..+.......++.+...+.|.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---CCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 468888753 567777889999999999998765321 2233455566777777889988887543
No 386
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=24.89 E-value=43 Score=32.48 Aligned_cols=74 Identities=9% Similarity=-0.112 Sum_probs=50.9
Q ss_pred eeeeHHHHHHHHHhCCCCcCEEEEecCCCCCCCChHHHHHHHHhCcccEEeeeeeeecCce---eeEEecceeeeceEEE
Q 003275 400 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT---KLVDFTQPYMESGLVV 476 (834)
Q Consensus 400 ~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~n~s~~~~~~~l~~g~~D~~~~~~~i~~~r~---~~vdfs~p~~~~~~~~ 476 (834)
.|+.-+|...+.+..|.++.+.+ +.-..++.++.+|.+|+.+..-....+.. ....-..+|....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVA---------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEE---------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEE---------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 46667888888888887755554 33567899999999999876443332221 1112246888889999
Q ss_pred EEecCC
Q 003275 477 VAPVQK 482 (834)
Q Consensus 477 vv~~~~ 482 (834)
++|+..
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 387
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.63 E-value=2.4e+02 Score=23.15 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=38.2
Q ss_pred chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 003275 87 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLG 153 (834)
Q Consensus 87 ~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g 153 (834)
...+.+...+++.|..+.....-. .+ .+..++...+++|++... ..++..++++.++..
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~~~~~-----~~---a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 12 LAIAAIRNLLIKNDIEILAELTEG-----GS---AVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSS-----TT---HHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCcEEEEEcCCH-----HH---HHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 356778888888887664221111 22 344445567999999854 456788888888765
No 388
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=24.57 E-value=1.9e+02 Score=28.35 Aligned_cols=72 Identities=8% Similarity=-0.150 Sum_probs=48.1
Q ss_pred HHHHHcCCeEEEEEEEc--CCccc-chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 65 DLVEYYGWREVIAIFVD--DDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 65 ~ll~~~~W~~v~iI~~d--~~~g~-~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
+-+..-.-+.|++|..+ +.|.. ..+..+.+++++.|..+..... ..+.......++.+...+.|.||+....
T Consensus 6 r~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 6 RLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp ------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 33444445778888865 35666 8899999999999998875432 1233455677788888889988877543
No 389
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=24.49 E-value=1.9e+02 Score=30.22 Aligned_cols=110 Identities=9% Similarity=-0.003 Sum_probs=66.7
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCC---CCChHHHHHHHH
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSP---GASRSAINSLLV 123 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~---~~~~~~~~~~l~ 123 (834)
+|-+...+.-..+ +. +++..+.+++.+|+....+. ...+.+.+.+++.|+.+... .++. ..+...+...+.
T Consensus 41 ~y~I~~G~g~l~~---l~-~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFAN---PA-LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGC---GG-GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHh---HH-HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHH
Confidence 4545555443322 22 44445678998888666544 37788899999889876422 2222 124467777888
Q ss_pred HhhcCCc---eEEEEEeCh--hhHHHHHHHHHhCCCCCCCeEEEEeC
Q 003275 124 GANLMES---RVFVVHVNP--DTGLTIFSVAKSLGMTAGSYVWIATD 165 (834)
Q Consensus 124 ~l~~~~~---~vivl~~~~--~~~~~i~~~a~~~g~~~~~~vwi~~~ 165 (834)
.+++.+. ++||-.+.+ -|+..++......| ..++-|.|.
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 8877666 677766554 46666665444434 456666665
No 390
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=24.49 E-value=1.3e+02 Score=32.07 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP- 139 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~- 139 (834)
..+|.--... -.-+.+++ |..|..+..+.|...-+..++.|..+..+- +.+ ++.+++..++|+|++.+..
T Consensus 71 ~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI~-----d~~--Qi~ea~~~GAD~ILLi~a~l 141 (452)
T 1pii_A 71 ARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFII-----DPY--QIYLARYYQADACLLMLSVL 141 (452)
T ss_dssp HHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCCC-----SHH--HHHHHHHTTCSEEEEETTTC
T ss_pred HHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEeccC-----CHH--HHHHHHHcCCCEEEEEcccC
Confidence 4444443333 44445444 666777777777776666677776554332 233 4677889999999998653
Q ss_pred --hhHHHHHHHHHhCCCC
Q 003275 140 --DTGLTIFSVAKSLGMT 155 (834)
Q Consensus 140 --~~~~~i~~~a~~~g~~ 155 (834)
.....+++.|+++||.
T Consensus 142 ~~~~l~~l~~~a~~lgm~ 159 (452)
T 1pii_A 142 DDDQYRQLAAVAHSLEMG 159 (452)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 5678899999999985
No 391
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=24.32 E-value=78 Score=28.54 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=40.8
Q ss_pred EEEEEEEcCCc--c---cchHHHHHHH----HhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003275 74 EVIAIFVDDDY--G---RNGISVLGDA----LSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 138 (834)
Q Consensus 74 ~v~iI~~d~~~--g---~~~~~~l~~~----l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 138 (834)
++++|...|+- | ......+.+. +++.|+++.....++. +.+.+...+++..+.++|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 56666644331 2 2345678888 8899999888777773 3477888888876556899988753
No 392
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.21 E-value=3.7e+02 Score=23.74 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=55.4
Q ss_pred eEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHHH
Q 003275 73 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP----DTGLTIFSV 148 (834)
Q Consensus 73 ~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~----~~~~~i~~~ 148 (834)
.+|.+.....+.-.-+...+...++..|.+|.+--.. . .....+..+++.++++|.+.+.. ..+..++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~---~---p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR---Q---TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB---C---CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC---C---CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 3455444444544455677778889999998753221 1 23445667777889999998753 456777778
Q ss_pred HHhCCCCCCCeEEEEeC
Q 003275 149 AKSLGMTAGSYVWIATD 165 (834)
Q Consensus 149 a~~~g~~~~~~vwi~~~ 165 (834)
+++.|.. .-.+|+...
T Consensus 93 L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHTTCT-TSCEEEEEC
T ss_pred HHhcCCC-CCEEEEeCC
Confidence 8887752 244677653
No 393
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=24.18 E-value=1.2e+02 Score=29.73 Aligned_cols=81 Identities=9% Similarity=-0.038 Sum_probs=51.3
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~-~~~~i~~~a 149 (834)
+.|++|..+ +.|.....+.+.+++++.|..+....... ..+...-...++.+...+.|.||+..... .....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 357777753 56777788899999999998776533111 12223445567777777889888864332 223456677
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 394
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=24.03 E-value=89 Score=30.73 Aligned_cols=78 Identities=8% Similarity=-0.149 Sum_probs=49.6
Q ss_pred eEEEEEEEc------CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003275 73 REVIAIFVD------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIF 146 (834)
Q Consensus 73 ~~v~iI~~d------~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i~ 146 (834)
+.|++|..+ +.|....+..+.+++++.|..+..... ..+.......++.+...+.|.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF---SEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC---CSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC---CCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 356666543 467778889999999999998765321 1122223456777777889988886543222 445
Q ss_pred HHHHhCCC
Q 003275 147 SVAKSLGM 154 (834)
Q Consensus 147 ~~a~~~g~ 154 (834)
+.+.+.|.
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66666664
No 395
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=23.77 E-value=91 Score=30.35 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=36.3
Q ss_pred HHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeec--CCCCC-----C----hHHHHHHHHHhhcCCceEEEEE
Q 003275 68 EYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAP--FSPGA-----S----RSAINSLLVGANLMESRVFVVH 136 (834)
Q Consensus 68 ~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~--~~~~~-----~----~~~~~~~l~~l~~~~~~vivl~ 136 (834)
...+-++|+++......- .....+.+++.|+++..... +-... + ...+...+.++.+. +|+||+.
T Consensus 102 ~~~~~~rigVlaT~~T~~---~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILG 177 (254)
T 1b73_A 102 KKSRNKKIGVIGTPATVK---SGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILG 177 (254)
T ss_dssp HHCSSCEEEEEECHHHHH---HCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEEC
T ss_pred HccCCCEEEEEEChHHhh---hHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEC
Confidence 344668999988653211 12345566677887752211 11111 1 12344455555555 9999998
Q ss_pred eCh
Q 003275 137 VNP 139 (834)
Q Consensus 137 ~~~ 139 (834)
|..
T Consensus 178 CT~ 180 (254)
T 1b73_A 178 CTH 180 (254)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 396
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.76 E-value=37 Score=32.03 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.1
Q ss_pred cEEEECCCChhhHHHHHHhhccCCccEEecc
Q 003275 5 VVAAIGPQSSGIAHVISHVVNELNVPLLSFG 35 (834)
Q Consensus 5 V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~ 35 (834)
+..++||.+|+=.-....+++++++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4679999999988888899999999999853
No 397
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.74 E-value=2.2e+02 Score=23.56 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=37.8
Q ss_pred chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC-------hhhHHHHHHHHHhCC
Q 003275 87 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-------PDTGLTIFSVAKSLG 153 (834)
Q Consensus 87 ~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-------~~~~~~i~~~a~~~g 153 (834)
.....+...+++.|..|.. .. +....+..++...+++|++... ..++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVIT---LS------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEE---EC------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEE---eC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 4567788888888877652 11 2234555566677999999865 336677787777653
No 398
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=23.68 E-value=2e+02 Score=29.56 Aligned_cols=110 Identities=5% Similarity=-0.051 Sum_probs=59.6
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCC-cEEEeeecCCCCCChHHHHHHHHHh
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKR-AKISYKAPFSPGASRSAINSLLVGA 125 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g-~~I~~~~~~~~~~~~~~~~~~l~~l 125 (834)
||-+...+.-.. .+.++++.+ +++.+|+....+.. ..+.+.+.+ +.| +.+........+.+.+.+...+..+
T Consensus 11 ~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~ 83 (354)
T 1xah_A 11 NYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYI 83 (354)
T ss_dssp CCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHH
T ss_pred CccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHH
Confidence 555555554332 244555555 78888875543332 566777777 666 3321111122223557788888888
Q ss_pred hcCCc---eEEEEEeC--hhhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 003275 126 NLMES---RVFVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATDW 166 (834)
Q Consensus 126 ~~~~~---~vivl~~~--~~~~~~i~~~a~~~g~~~~~~vwi~~~~ 166 (834)
++.++ ++||-.+. .-|+..++......| ..++-|.|..
T Consensus 84 ~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 84 LSHHVTRNTAIIAVGGGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp HTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred HHcCCCCCceEEEECChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 88887 88886654 456777765544333 4566666654
No 399
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.53 E-value=2.7e+02 Score=21.87 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=37.3
Q ss_pred chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHhCC
Q 003275 87 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP--DTGLTIFSVAKSLG 153 (834)
Q Consensus 87 ~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~--~~~~~i~~~a~~~g 153 (834)
...+.+...+++.|..+.. .. +....+..++...++++++.... .++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~---~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIW---LV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEE---ec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 4567777888888877653 11 12334444555578999988643 46777888887754
No 400
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=23.53 E-value=73 Score=28.66 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003275 60 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 139 (834)
Q Consensus 60 ~~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 139 (834)
++ +..+.++++-.++. |.+|........+.+.+.+.-.|+++.. + +.++....+.+-+ .+.+++++.-++
T Consensus 19 GQ-~~~W~k~~~~~~Ii-VvnD~vA~D~~~k~~lk~A~P~gvk~~i---~----sve~ai~~~~~~~-~~~~v~il~k~p 88 (163)
T 3p3v_A 19 GQ-GQLWVKFLNCNTVI-VANDAVSEDKIQQSLMKTVIPSSIAIRF---F----SIQKVIDIIHKAS-PAQSIFIVVKDL 88 (163)
T ss_dssp ST-HHHHHHHTTCSEEE-EECHHHHHCHHHHHHHGGGSCTTSEEEE---E----CHHHHHHHGGGCC-TTCEEEEEESSH
T ss_pred hh-hhhhhhhcCCCEEE-EEcccccCCHHHHHHHHhhCCCCceEEE---E----EHHHHHHHHhccC-CCceEEEEECCH
Confidence 45 77899999999975 5545554555666666666666877654 2 2244444454433 567899999999
Q ss_pred hhHHHHHH
Q 003275 140 DTGLTIFS 147 (834)
Q Consensus 140 ~~~~~i~~ 147 (834)
.++..+++
T Consensus 89 ~d~~~lv~ 96 (163)
T 3p3v_A 89 QDAKLLVE 96 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 401
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=23.44 E-value=1.3e+02 Score=31.22 Aligned_cols=96 Identities=8% Similarity=-0.013 Sum_probs=59.6
Q ss_pred CceEEccCChHHHHHHHHHHHHHcCC---eEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHH
Q 003275 47 PYFLRTTQSDYYQMHAVADLVEYYGW---REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLV 123 (834)
Q Consensus 47 p~~~r~~ps~~~q~~aia~ll~~~~W---~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~ 123 (834)
|.-+....... ..+.++++.++. +++.+|+....... .+.+.+++.|+.+.....+..+.+.+.+...+.
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~ 100 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTA 100 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHH
Confidence 44344444333 336677777763 77777775443322 466777777776644444555556678888888
Q ss_pred HhhcCC---ceEEEEEeCh--hhHHHHHHHH
Q 003275 124 GANLME---SRVFVVHVNP--DTGLTIFSVA 149 (834)
Q Consensus 124 ~l~~~~---~~vivl~~~~--~~~~~i~~~a 149 (834)
.+++.+ +|+||-.+.+ -|+.+++...
T Consensus 101 ~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 101 QVKAFNTKLPVSVVGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp HHHHHCSSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 887766 9999877654 4566665443
No 402
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=22.78 E-value=1.4e+02 Score=29.77 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCcEEEECCCChhhHHHHHHhhccCCccEEe
Q 003275 3 NEVVAAIGPQSSGIAHVISHVVNELNVPLLS 33 (834)
Q Consensus 3 ~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is 33 (834)
.++.+|+=+..+..+.++..+-+...+|+|.
T Consensus 85 ~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 85 KRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 4677788777777666677777788899886
No 403
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=22.42 E-value=55 Score=32.43 Aligned_cols=52 Identities=8% Similarity=0.211 Sum_probs=43.7
Q ss_pred CcchhhHHHHHHHHhhccC--CCcccccchhhhHHHHHHHHHHhhhccccceee
Q 003275 529 SQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTS 580 (834)
Q Consensus 529 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s 580 (834)
.-++..++||++.++.-.| .-.|.+..+|++.+++.++++.+...+.+++..
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~ 144 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ 144 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999998665 558999999999999999999888888777653
No 404
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=22.39 E-value=2.7e+02 Score=26.96 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh-
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP- 139 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~- 139 (834)
..+|+-....|-+.+.++. |+.|..+..+.+...-+..++.|.....+- +++ ++......++|.|++....
T Consensus 68 ~~~A~~~~~~GA~~isvlt-~~~~f~G~~~~l~~i~~~v~lPvl~kdfI~-----d~~--qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKDFVV-----DPF--MLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEESCCC-----SHH--HHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEec-chhhhccCHHHHHHHHHhcCCCEEECCcCC-----CHH--HHHHHHHcCCCEEEECccch
Confidence 5566677788989888765 555555667777776666677765443332 122 4566778999999987532
Q ss_pred -hhHHHHHHHHHhCCCC
Q 003275 140 -DTGLTIFSVAKSLGMT 155 (834)
Q Consensus 140 -~~~~~i~~~a~~~g~~ 155 (834)
.....++..+++.||.
T Consensus 140 ~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 140 GELTGAYLEEARRLGLE 156 (254)
T ss_dssp GGGHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHCCCe
Confidence 6788888888888864
No 405
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.93 E-value=3.1e+02 Score=21.97 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=39.4
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSL 152 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~ 152 (834)
+|.+|+. .....+...+++.|..+.. .. + ....+..++...++++++... ..++..+++..++.
T Consensus 5 livdd~~---~~~~~l~~~L~~~~~~v~~---~~---~---~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 5 LIVEDNE---LNMKLFHDLLEAQGYETLQ---TR---E---GLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---ES---C---HHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred EEEcCCH---HHHHHHHHHHHHcCcEEEE---eC---C---HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4554543 3566777778777877642 11 1 123444555567899998753 34677788888774
No 406
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.79 E-value=2.5e+02 Score=25.07 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=46.4
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEE--eChhhHHHHHHHHHhCCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH--VNPDTGLTIFSVAKSLGM 154 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~--~~~~~~~~i~~~a~~~g~ 154 (834)
+|.+|+. .....+...+++.|..|.. . .+....+..++...+|+|++. +...++..+++..++..-
T Consensus 11 Livdd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 11 LVIDDNE---VFAGTLARGLERRGYAVRQ---A------HNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQP 78 (184)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---E------CSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCT
T ss_pred EEEcCCH---HHHHHHHHHHHHCCCEEEE---e------CCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCC
Confidence 4454544 3566777778877876532 1 223456677777889999986 445577888888877542
Q ss_pred CCCCeEEEEeC
Q 003275 155 TAGSYVWIATD 165 (834)
Q Consensus 155 ~~~~~vwi~~~ 165 (834)
.-.+.+.+.
T Consensus 79 --~~~ii~lt~ 87 (184)
T 3rqi_A 79 --DARILVLTG 87 (184)
T ss_dssp --TCEEEEEES
T ss_pred --CCCEEEEeC
Confidence 223445443
No 407
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.69 E-value=1.6e+02 Score=26.67 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=38.9
Q ss_pred EEEEEEEcCC--cc---cchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003275 74 EVIAIFVDDD--YG---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 137 (834)
Q Consensus 74 ~v~iI~~d~~--~g---~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 137 (834)
++++|..-|+ .| ......|.+.+++.|+++.....++. +...+...++++.+. +|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHH-CSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhc-CCEEEEcC
Confidence 4566654332 12 24466788888888888887777763 336677777665432 67877765
No 408
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.68 E-value=2.3e+02 Score=27.87 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe---
Q 003275 61 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--- 137 (834)
Q Consensus 61 ~aia~ll~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--- 137 (834)
..+|.-....|-..+.++. |+.|..+..+.+...-+..++.|.....+ .+ ++ ++...+..++|.|++..
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kdfi---id--~~--qv~~A~~~GAD~VlLi~a~l 146 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKDFV---VQ--PY--QIHEARAHGADMLLLIVAAL 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEESCC---CS--HH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECccc---cC--HH--HHHHHHHcCCCEEEEecccC
Confidence 4566666777888888776 44555555666666555567777654322 22 22 35666679999999863
Q ss_pred ChhhHHHHHHHHHhCCCC
Q 003275 138 NPDTGLTIFSVAKSLGMT 155 (834)
Q Consensus 138 ~~~~~~~i~~~a~~~g~~ 155 (834)
...+...++..+++.||.
T Consensus 147 ~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCc
Confidence 456778889999998874
No 409
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=21.56 E-value=1.5e+02 Score=30.04 Aligned_cols=89 Identities=8% Similarity=-0.044 Sum_probs=55.8
Q ss_pred cCCCChhhhhcCCCCeeEeeCchhhHHHHhhhcccccceEecCCHHHHHHHHhcCCCCCceEEEEechhhHHHHhhcCCc
Q 003275 589 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC 668 (834)
Q Consensus 589 ~~i~s~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~ 668 (834)
.+|++++||. |+++.+..+......++ .++.. -++. ...|.+.+|++ |-+|+.....+.+...--.+-+
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~~-alGa~---pv~m-~~~Evy~ALq~----GvvDg~e~~~~~~~~~~~~Ev~ 212 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESYK-AFGAT---PTPL-PWGEVYGGLQT----NVIQGQENPTFFLYSTKIYEVT 212 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHHH-HHTSE---EEEC-CGGGHHHHHHT----TSCCEEEEEHHHHHHTTGGGSC
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHHH-HcCCe---eeec-CHHHHHHHHHc----CCcceEecCHHHHHhccHhhhc
Confidence 5899999997 99999877666666664 45543 3333 56789999999 8999988765543322111134
Q ss_pred cEEEeCCcccccceEEEEcCC
Q 003275 669 EFRTVGQEFTKSGWGFAFQRD 689 (834)
Q Consensus 669 ~l~~v~~~~~~~~~~~~~~k~ 689 (834)
++....... .....+.+.+.
T Consensus 213 ky~~~~~~~-~~~~~~~~n~~ 232 (326)
T 3fxb_A 213 DYITYAGHN-NFTTAVMANKD 232 (326)
T ss_dssp SEEEECCCC-EEEEEEEEEHH
T ss_pred ceeEEcCcc-ccceEEEEeHH
Confidence 544443322 23445666554
No 410
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.54 E-value=2.6e+02 Score=22.44 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=39.7
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeCh---hhHHHHHHHHHhC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP---DTGLTIFSVAKSL 152 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~---~~~~~i~~~a~~~ 152 (834)
+|.+|+. .....+...+++.|..+.. .. + ....+..++...++++++.... .++..+++..++.
T Consensus 9 livdd~~---~~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 9 LIVESDT---ALSATLRSALEGRGFTVDE---TT---D---GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp EEECSCH---HHHHHHHHHHHHHTCEEEE---EC---C---HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred EEEeCCH---HHHHHHHHHHHhcCceEEE---ec---C---HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 3444443 3566777777777877642 21 1 2334445555668999988643 3677888888875
No 411
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=21.51 E-value=78 Score=31.32 Aligned_cols=80 Identities=9% Similarity=-0.042 Sum_probs=52.9
Q ss_pred eEEEEEEEc--CCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003275 73 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT-GLTIFSVA 149 (834)
Q Consensus 73 ~~v~iI~~d--~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~-~~~i~~~a 149 (834)
+.|++|..+ +.|.......+.+++++.|..+.....-.. .+.......++.+...+.|.||+...... ....++.+
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY-PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST-TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 467888754 567778889999999999998876433211 13345566777777788998888754332 23456666
Q ss_pred HhCCC
Q 003275 150 KSLGM 154 (834)
Q Consensus 150 ~~~g~ 154 (834)
. .|.
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 5 554
No 412
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.90 E-value=86 Score=20.38 Aligned_cols=9 Identities=11% Similarity=-0.067 Sum_probs=3.4
Q ss_pred cccccchhH
Q 003275 735 RLSLKSFWG 743 (834)
Q Consensus 735 ~l~l~~~~g 743 (834)
.|+-...+|
T Consensus 7 ~ls~GaIAG 15 (38)
T 2k1k_A 7 GLTGGEIVA 15 (38)
T ss_dssp TCCHHHHHH
T ss_pred CCCCCceee
Confidence 344333333
No 413
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.78 E-value=2.9e+02 Score=22.24 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=41.3
Q ss_pred EEEEcCCcccchHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEe--ChhhHHHHHHHHHhCC
Q 003275 77 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLG 153 (834)
Q Consensus 77 iI~~d~~~g~~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--~~~~~~~i~~~a~~~g 153 (834)
+|.+|+. .....+...+++.|..+.. .. +....+..+....++++++.. ...++..+++..++..
T Consensus 6 livdd~~---~~~~~l~~~l~~~g~~v~~---~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 72 (127)
T 2jba_A 6 LVVEDEA---PIREMVCFVLEQNGFQPVE---AE------DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRES 72 (127)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEE---EC------SHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTST
T ss_pred EEEcCCH---HHHHHHHHHHHHCCceEEE---eC------CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCc
Confidence 4444443 3556677777777876542 21 234455666677899999874 3446778888887654
No 414
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=20.47 E-value=4.4e+02 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 58 YQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 58 ~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
.|-..+-++....||.-+. +|.|
T Consensus 26 ~Q~~~l~~~a~~~g~~i~~-~~~D 48 (167)
T 3guv_A 26 AQKSRMKAFAIYNDYEIVG-EYED 48 (167)
T ss_dssp HHHHHHHHHHHHTTCEEEE-EEEE
T ss_pred HHHHHHHHHHHhCCCEEEE-EEee
Confidence 4555556666666776443 4444
No 415
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=20.45 E-value=6.3e+02 Score=25.36 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=65.3
Q ss_pred CCCcEEEECCCChhhHHHHHHhhccCCccEEecccCCCCCCCCCCCceEEccCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 003275 2 ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD 81 (834)
Q Consensus 2 ~~~V~aiiGp~~S~~~~~~~~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps~~~q~~aia~ll~~~~W~~v~iI~~d 81 (834)
+||-...--+.+...-..++..+.+.+++.|-.+ .|..+ |. ..+.+..+.+...-.++..+..-
T Consensus 15 RDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g--~p~~~-----------~~---d~e~v~~i~~~~~~~~i~~l~r~ 78 (325)
T 3eeg_A 15 RDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAG--FPVSS-----------PG---DFNSVVEITKAVTRPTICALTRA 78 (325)
T ss_dssp GCC-------CCTTHHHHHHHHHHHHTCSEEEEE--CTTSC-----------HH---HHHHHHHHHHHCCSSEEEEECCS
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCC-----------Hh---HHHHHHHHHHhCCCCEEEEeecC
Confidence 4455555335677788888999999999999754 23211 21 22344444444433444444321
Q ss_pred CCcccchHHHHHHHHhcCCcEEEee-ecCC-----------CCCChHHHHHHHHHhhcCCceEEEEEe-----ChhhHHH
Q 003275 82 DDYGRNGISVLGDALSKKRAKISYK-APFS-----------PGASRSAINSLLVGANLMESRVFVVHV-----NPDTGLT 144 (834)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~I~~~-~~~~-----------~~~~~~~~~~~l~~l~~~~~~vivl~~-----~~~~~~~ 144 (834)
. ...++...+++...|...... ...+ ....-..+...+..+++.+.++.+-+. +++....
T Consensus 79 ~---~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~ 155 (325)
T 3eeg_A 79 K---EADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLAR 155 (325)
T ss_dssp C---HHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHH
T ss_pred C---HHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHH
Confidence 1 123444445555556543321 0110 000112345566666667666655432 3455667
Q ss_pred HHHHHHhCCC
Q 003275 145 IFSVAKSLGM 154 (834)
Q Consensus 145 i~~~a~~~g~ 154 (834)
+.+++.+.|-
T Consensus 156 ~~~~~~~~G~ 165 (325)
T 3eeg_A 156 MVEAVIEAGA 165 (325)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhcCC
Confidence 7777777663
No 416
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.26 E-value=3.8e+02 Score=22.30 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=44.2
Q ss_pred chHHHHHHHHhcCCcEEEeeecCCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHhCCCCCCCeEEEEe
Q 003275 87 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIAT 164 (834)
Q Consensus 87 ~~~~~l~~~l~~~g~~I~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~i~~~a~~~g~~~~~~vwi~~ 164 (834)
.....+...+++.|...... .. .+....+..+....+++|++... ..++..+++..++.+....-.+.+.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~-~~------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLE-FV------DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-EE------SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCeeEE-EE------CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 35677788888887652211 11 23355677777788999999754 44678888888874332222344444
Q ss_pred C
Q 003275 165 D 165 (834)
Q Consensus 165 ~ 165 (834)
+
T Consensus 89 ~ 89 (144)
T 3kht_A 89 D 89 (144)
T ss_dssp T
T ss_pred C
Confidence 3
No 417
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=20.23 E-value=3.7e+02 Score=27.98 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=60.4
Q ss_pred HHHcCCeEEEEEEEcCCcccchHHHHHHHHhcC------CcEEEeeecCCCC---CChHHHHHHHHHhhcCC--c---eE
Q 003275 67 VEYYGWREVIAIFVDDDYGRNGISVLGDALSKK------RAKISYKAPFSPG---ASRSAINSLLVGANLME--S---RV 132 (834)
Q Consensus 67 l~~~~W~~v~iI~~d~~~g~~~~~~l~~~l~~~------g~~I~~~~~~~~~---~~~~~~~~~l~~l~~~~--~---~v 132 (834)
++.++.+++.+|+....+.. ..+.+.+.+++. |+++.. ..++.+ .+.+.+....+.+++.+ . ++
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46677789988886544332 567777777766 766632 234432 24467788888888777 6 88
Q ss_pred EEEEeC--hhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 003275 133 FVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATD 165 (834)
Q Consensus 133 ivl~~~--~~~~~~i~~~a~~~g~~~~~~vwi~~~ 165 (834)
||-.+. .-|+..++......| -.++-|.|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRG---VRYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCC---CCEEEECCc
Confidence 886654 457777776555445 356666664
Done!