Query 003276
Match_columns 834
No_of_seqs 448 out of 2317
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 20:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 6E-172 1E-176 1481.5 59.9 635 123-832 5-663 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2E-165 4E-170 1449.2 57.0 647 125-832 15-702 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 5E-163 1E-167 1433.2 61.3 630 132-832 5-662 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 9E-154 2E-158 1358.3 57.8 614 152-832 1-646 (683)
5 KOG1157 Predicted guanosine po 100.0 3.8E-79 8.2E-84 652.9 22.9 429 141-625 69-524 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 3.8E-39 8.2E-44 317.5 2.5 153 152-310 1-153 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 1.4E-26 3E-31 217.0 10.5 110 375-498 1-113 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 3.5E-26 7.7E-31 218.8 11.6 123 351-488 4-129 (129)
9 COG2357 PpGpp synthetase catal 99.9 1E-25 2.2E-30 231.6 11.7 116 371-498 53-178 (231)
10 PF02824 TGS: TGS domain; Int 99.7 2.2E-17 4.8E-22 138.4 5.1 60 565-624 1-60 (60)
11 cd01666 TGS_DRG_C TGS_DRG_C: 99.2 1.2E-11 2.7E-16 108.2 4.9 52 573-624 17-75 (75)
12 cd01669 TGS_Ygr210_C TGS_Ygr21 99.1 3.2E-11 6.9E-16 106.0 4.3 51 573-624 23-76 (76)
13 cd01668 TGS_RelA_SpoT TGS_RelA 98.9 5.2E-09 1.1E-13 86.5 7.0 60 565-624 1-60 (60)
14 cd01616 TGS The TGS domain, na 98.4 4.7E-07 1E-11 73.2 6.6 58 567-624 3-60 (60)
15 cd04938 TGS_Obg-like TGS_Obg-l 98.4 3E-07 6.6E-12 81.0 5.4 52 573-624 24-76 (76)
16 PRK09602 translation-associate 98.3 3.6E-07 7.7E-12 103.8 4.5 52 573-625 341-395 (396)
17 cd01667 TGS_ThrRS_N TGS _ThrRS 98.3 2.4E-06 5.3E-11 69.5 6.7 58 567-624 3-60 (61)
18 TIGR03276 Phn-HD phosphonate d 98.0 1.2E-05 2.5E-10 81.8 7.5 70 160-229 13-100 (179)
19 PRK00413 thrS threonyl-tRNA sy 97.8 2.3E-05 5E-10 94.3 6.8 63 565-627 2-64 (638)
20 PF13291 ACT_4: ACT domain; PD 97.7 6.2E-05 1.3E-09 66.1 5.3 39 793-831 3-41 (80)
21 COG1163 DRG Predicted GTPase [ 97.4 0.00012 2.6E-09 80.0 4.0 61 564-624 290-364 (365)
22 PTZ00258 GTP-binding protein; 97.3 0.00035 7.6E-09 79.4 5.8 62 564-625 304-387 (390)
23 PRK05659 sulfur carrier protei 97.2 0.0012 2.6E-08 56.2 6.8 54 570-625 5-62 (66)
24 PRK06437 hypothetical protein; 97.0 0.0023 4.9E-08 55.1 7.2 60 564-625 4-63 (67)
25 cd00565 ThiS ThiaminS ubiquiti 97.0 0.0019 4.2E-08 54.9 6.2 53 571-625 5-61 (65)
26 cd04877 ACT_TyrR N-terminal AC 96.9 0.0014 2.9E-08 57.0 5.2 35 798-832 2-36 (74)
27 PRK07440 hypothetical protein; 96.8 0.004 8.7E-08 54.1 6.7 54 570-625 9-66 (70)
28 PRK06944 sulfur carrier protei 96.7 0.0044 9.4E-08 52.5 6.4 52 571-625 6-61 (65)
29 PRK01777 hypothetical protein; 96.7 0.0032 7E-08 58.0 5.6 53 573-625 19-76 (95)
30 PRK12444 threonyl-tRNA synthet 96.7 0.0031 6.7E-08 76.3 7.1 65 562-626 3-67 (639)
31 PF01842 ACT: ACT domain; Int 96.6 0.0027 5.9E-08 52.7 4.6 35 798-832 2-36 (66)
32 PRK07696 sulfur carrier protei 96.6 0.0054 1.2E-07 52.8 6.2 53 571-625 6-63 (67)
33 TIGR01683 thiS thiamine biosyn 96.6 0.007 1.5E-07 51.4 6.7 53 571-625 4-60 (64)
34 cd04887 ACT_MalLac-Enz ACT_Mal 96.5 0.0036 7.9E-08 53.7 4.7 33 799-831 2-34 (74)
35 PRK08053 sulfur carrier protei 96.4 0.0099 2.1E-07 50.9 6.8 53 571-625 6-62 (66)
36 PRK08364 sulfur carrier protei 96.4 0.0091 2E-07 51.8 6.4 50 574-625 17-66 (70)
37 PLN02908 threonyl-tRNA synthet 96.3 0.0064 1.4E-07 74.2 7.0 90 525-627 25-115 (686)
38 COG2104 ThiS Sulfur transfer p 96.3 0.011 2.4E-07 51.3 6.4 52 572-625 9-64 (68)
39 cd04895 ACT_ACR_1 ACT domain-c 95.9 0.012 2.5E-07 51.6 4.6 35 798-832 3-37 (72)
40 PRK06488 sulfur carrier protei 95.9 0.022 4.9E-07 48.4 6.2 52 571-625 6-61 (65)
41 PRK09601 GTP-binding protein Y 95.6 0.015 3.3E-07 65.6 5.5 61 564-624 280-362 (364)
42 cd04869 ACT_GcvR_2 ACT domains 95.6 0.017 3.6E-07 50.5 4.6 34 799-832 2-35 (81)
43 cd04896 ACT_ACR-like_3 ACT dom 95.5 0.02 4.2E-07 50.6 4.5 32 799-830 3-34 (75)
44 cd04897 ACT_ACR_3 ACT domain-c 95.5 0.02 4.2E-07 50.6 4.5 35 798-832 3-37 (75)
45 cd04899 ACT_ACR-UUR-like_2 C-t 95.4 0.025 5.4E-07 47.9 4.9 35 798-832 2-36 (70)
46 cd04875 ACT_F4HF-DF N-terminal 95.4 0.02 4.3E-07 49.6 4.4 33 799-831 2-34 (74)
47 cd04900 ACT_UUR-like_1 ACT dom 95.4 0.027 5.9E-07 48.7 5.2 34 798-831 3-36 (73)
48 PLN02799 Molybdopterin synthas 95.4 0.027 5.9E-07 49.9 5.1 54 571-624 19-77 (82)
49 cd04926 ACT_ACR_4 C-terminal 95.3 0.032 7E-07 48.3 5.4 35 798-832 3-37 (72)
50 cd04870 ACT_PSP_1 CT domains f 95.3 0.018 3.9E-07 50.2 3.8 31 799-829 2-32 (75)
51 cd04888 ACT_PheB-BS C-terminal 95.3 0.027 5.9E-07 48.3 4.9 33 798-830 2-34 (76)
52 cd04927 ACT_ACR-like_2 Second 95.3 0.03 6.5E-07 49.2 4.9 34 798-831 2-35 (76)
53 cd04886 ACT_ThrD-II-like C-ter 95.2 0.025 5.4E-07 47.3 4.3 33 799-831 1-33 (73)
54 cd04908 ACT_Bt0572_1 N-termina 95.0 0.045 9.8E-07 46.3 5.2 32 798-829 3-34 (66)
55 cd04925 ACT_ACR_2 ACT domain-c 94.9 0.041 8.8E-07 48.0 4.8 33 799-831 3-35 (74)
56 PRK06083 sulfur carrier protei 94.9 0.057 1.2E-06 48.7 5.8 54 570-625 23-80 (84)
57 cd04873 ACT_UUR-ACR-like ACT d 94.9 0.048 1E-06 45.7 5.1 35 798-832 2-36 (70)
58 PF03658 Ub-RnfH: RnfH family 94.8 0.02 4.4E-07 51.5 2.6 57 569-625 9-73 (84)
59 cd04879 ACT_3PGDH-like ACT_3PG 94.7 0.046 1E-06 45.2 4.5 33 799-831 2-34 (71)
60 PRK00194 hypothetical protein; 94.6 0.028 6.1E-07 50.5 3.2 34 798-831 5-38 (90)
61 PRK05863 sulfur carrier protei 94.6 0.07 1.5E-06 45.6 5.4 53 571-625 6-61 (65)
62 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.6 0.055 1.2E-06 45.9 4.9 33 799-831 3-35 (79)
63 PRK07334 threonine dehydratase 94.6 0.045 9.7E-07 62.8 5.5 40 793-832 323-362 (403)
64 cd04893 ACT_GcvR_1 ACT domains 94.6 0.044 9.6E-07 48.1 4.2 31 799-829 4-34 (77)
65 cd00754 MoaD Ubiquitin domain 94.3 0.081 1.8E-06 46.2 5.2 53 573-625 18-76 (80)
66 cd04889 ACT_PDH-BS-like C-term 94.3 0.065 1.4E-06 43.6 4.3 32 799-830 1-32 (56)
67 COG3830 ACT domain-containing 94.3 0.035 7.7E-07 50.4 2.9 32 797-828 4-35 (90)
68 PF13740 ACT_6: ACT domain; PD 94.2 0.065 1.4E-06 46.9 4.5 33 798-830 4-36 (76)
69 cd04872 ACT_1ZPV ACT domain pr 94.2 0.04 8.7E-07 49.4 3.2 34 798-831 3-36 (88)
70 cd04878 ACT_AHAS N-terminal AC 94.1 0.094 2E-06 43.6 5.1 34 798-831 2-35 (72)
71 cd04884 ACT_CBS C-terminal ACT 94.0 0.078 1.7E-06 45.5 4.5 33 799-831 2-34 (72)
72 cd04901 ACT_3PGDH C-terminal A 93.9 0.037 8E-07 46.6 2.2 32 799-830 2-33 (69)
73 PF14451 Ub-Mut7C: Mut7-C ubiq 93.7 0.11 2.4E-06 46.6 5.0 49 574-626 26-77 (81)
74 PRK08577 hypothetical protein; 93.6 0.12 2.7E-06 50.3 5.6 36 796-831 56-91 (136)
75 cd04874 ACT_Af1403 N-terminal 93.6 0.13 2.9E-06 42.8 5.1 35 798-832 2-36 (72)
76 cd04903 ACT_LSD C-terminal ACT 93.5 0.11 2.5E-06 43.1 4.5 32 799-830 2-33 (71)
77 PRK11840 bifunctional sulfur c 93.4 0.17 3.8E-06 56.1 6.8 55 571-627 6-64 (326)
78 cd04928 ACT_TyrKc Uncharacteri 93.1 0.18 3.8E-06 43.8 5.1 33 798-830 3-35 (68)
79 cd04882 ACT_Bt0572_2 C-termina 93.0 0.13 2.9E-06 42.5 4.1 31 799-829 2-32 (65)
80 PRK11589 gcvR glycine cleavage 93.0 0.11 2.4E-06 53.7 4.4 36 796-831 95-130 (190)
81 PF02597 ThiS: ThiS family; I 93.0 0.13 2.8E-06 44.6 4.1 54 572-625 13-73 (77)
82 PRK04435 hypothetical protein; 92.9 0.23 4.9E-06 49.4 6.2 38 793-830 66-103 (147)
83 PF06071 YchF-GTPase_C: Protei 92.8 0.11 2.3E-06 46.9 3.4 52 573-624 13-83 (84)
84 cd04909 ACT_PDH-BS C-terminal 92.6 0.19 4.1E-06 42.5 4.6 32 798-829 3-34 (69)
85 COG2716 GcvR Glycine cleavage 92.6 0.13 2.7E-06 52.1 4.0 37 795-831 91-127 (176)
86 PRK13562 acetolactate synthase 92.1 0.27 5.8E-06 44.4 5.0 32 798-829 4-35 (84)
87 PRK05007 PII uridylyl-transfer 91.5 0.24 5.1E-06 62.5 5.6 47 786-832 798-844 (884)
88 PRK01759 glnD PII uridylyl-tra 91.5 0.24 5.2E-06 62.2 5.5 47 786-832 773-819 (854)
89 PRK06737 acetolactate synthase 91.4 0.36 7.8E-06 42.8 5.0 33 798-830 4-36 (76)
90 cd04905 ACT_CM-PDT C-terminal 90.6 0.51 1.1E-05 41.4 5.3 33 798-830 3-35 (80)
91 PRK14707 hypothetical protein; 90.5 1.8 3.8E-05 57.7 11.6 152 321-499 2263-2424(2710)
92 cd04867 TGS_YchF_C TGS_YchF_C: 90.2 0.33 7.1E-06 43.7 3.6 51 573-623 13-82 (83)
93 TIGR01693 UTase_glnD [Protein- 90.2 0.39 8.4E-06 60.4 5.7 47 786-832 769-815 (850)
94 TIGR01682 moaD molybdopterin c 90.1 0.75 1.6E-05 40.6 5.9 52 573-624 18-75 (80)
95 PRK05092 PII uridylyl-transfer 89.8 0.46 9.9E-06 60.4 5.9 47 786-832 833-879 (931)
96 PRK03381 PII uridylyl-transfer 89.1 0.49 1.1E-05 58.9 5.3 47 786-832 697-743 (774)
97 cd04902 ACT_3PGDH-xct C-termin 89.1 0.51 1.1E-05 39.9 3.9 31 799-829 2-32 (73)
98 cd04883 ACT_AcuB C-terminal AC 89.0 0.73 1.6E-05 39.0 4.9 32 798-829 3-34 (72)
99 PRK11152 ilvM acetolactate syn 89.0 0.71 1.5E-05 41.0 4.8 33 798-830 5-37 (76)
100 PRK08178 acetolactate synthase 88.8 0.76 1.7E-05 42.6 5.1 34 796-829 8-41 (96)
101 cd04876 ACT_RelA-SpoT ACT dom 88.3 0.8 1.7E-05 36.6 4.5 33 799-831 1-33 (71)
102 PRK04374 PII uridylyl-transfer 88.3 0.63 1.4E-05 58.6 5.6 47 786-832 786-832 (869)
103 COG2844 GlnD UTP:GlnB (protein 87.9 0.65 1.4E-05 56.9 5.2 46 786-831 781-826 (867)
104 cd02116 ACT ACT domains are co 87.9 0.86 1.9E-05 34.5 4.2 33 799-831 1-33 (60)
105 PRK00275 glnD PII uridylyl-tra 87.2 0.78 1.7E-05 58.0 5.5 47 786-832 804-850 (895)
106 cd04880 ACT_AAAH-PDT-like ACT 87.0 1.2 2.5E-05 38.5 4.9 33 799-831 2-34 (75)
107 COG2914 Uncharacterized protei 86.8 0.93 2E-05 41.7 4.3 52 574-625 20-76 (99)
108 PRK03059 PII uridylyl-transfer 86.2 0.92 2E-05 57.1 5.4 46 786-831 776-821 (856)
109 TIGR01687 moaD_arch MoaD famil 83.5 2.1 4.5E-05 38.3 5.0 51 573-624 18-83 (88)
110 PRK12703 tRNA 2'-O-methylase; 81.4 5.5 0.00012 44.9 8.4 58 171-228 188-257 (339)
111 PRK03381 PII uridylyl-transfer 80.2 2.5 5.3E-05 52.8 5.7 45 786-831 590-634 (774)
112 smart00471 HDc Metal dependent 77.5 1.3 2.7E-05 39.9 1.6 37 168-204 2-44 (124)
113 PF13840 ACT_7: ACT domain ; P 76.9 3.6 7.8E-05 35.0 4.1 32 798-829 8-43 (65)
114 cd04871 ACT_PSP_2 ACT domains 75.8 1.2 2.7E-05 39.9 1.0 31 799-829 2-33 (84)
115 cd04885 ACT_ThrD-I Tandem C-te 74.7 3.6 7.9E-05 35.0 3.6 31 799-830 1-31 (68)
116 COG0012 Predicted GTPase, prob 74.1 0.94 2E-05 51.3 -0.3 49 573-622 320-368 (372)
117 PRK06545 prephenate dehydrogen 73.7 3.4 7.4E-05 46.7 4.0 34 796-829 290-323 (359)
118 PRK01759 glnD PII uridylyl-tra 73.4 4.7 0.0001 50.9 5.5 46 786-831 667-712 (854)
119 PRK09169 hypothetical protein; 73.3 32 0.0007 47.2 13.0 109 372-498 1915-2033(2316)
120 cd04904 ACT_AAAH ACT domain of 73.3 5.8 0.00013 34.5 4.5 33 799-831 3-35 (74)
121 PRK11130 moaD molybdopterin sy 72.2 9.5 0.00021 33.8 5.7 46 579-624 24-76 (81)
122 PRK05007 PII uridylyl-transfer 71.5 5.4 0.00012 50.6 5.5 45 786-830 691-735 (884)
123 COG4492 PheB ACT domain-contai 71.4 6.8 0.00015 38.4 4.8 35 794-828 70-104 (150)
124 TIGR00719 sda_beta L-serine de 71.2 5.2 0.00011 42.0 4.4 32 799-830 151-182 (208)
125 TIGR00092 GTP-binding protein 71.2 3.6 7.8E-05 47.0 3.4 60 565-624 285-366 (368)
126 PF01966 HD: HD domain; Inter 71.0 1.7 3.7E-05 39.5 0.7 32 172-203 2-40 (122)
127 TIGR01127 ilvA_1Cterm threonin 70.3 6.5 0.00014 44.7 5.4 37 794-830 303-339 (380)
128 KOG1637 Threonyl-tRNA syntheta 69.7 1.5 3.2E-05 50.7 0.0 59 569-629 5-64 (560)
129 PF13710 ACT_5: ACT domain; PD 68.4 6.1 0.00013 33.6 3.5 27 805-831 1-27 (63)
130 COG1418 Predicted HD superfami 67.4 5.2 0.00011 42.5 3.5 37 167-203 33-74 (222)
131 TIGR01693 UTase_glnD [Protein- 67.0 8.2 0.00018 48.8 5.7 36 795-830 667-702 (850)
132 PRK08818 prephenate dehydrogen 66.7 6.6 0.00014 44.9 4.4 34 796-829 295-329 (370)
133 PRK06382 threonine dehydratase 65.8 7.9 0.00017 44.6 4.9 34 796-829 330-363 (406)
134 PRK14707 hypothetical protein; 64.3 31 0.00067 46.9 9.9 103 378-498 2544-2654(2710)
135 PRK05092 PII uridylyl-transfer 64.0 9.8 0.00021 48.6 5.6 46 786-831 722-767 (931)
136 cd04929 ACT_TPH ACT domain of 62.9 13 0.00029 32.6 4.6 33 799-831 3-35 (74)
137 cd04931 ACT_PAH ACT domain of 62.4 14 0.00031 33.7 4.9 35 797-831 15-49 (90)
138 PRK08198 threonine dehydratase 61.3 13 0.00028 42.8 5.4 36 795-830 326-361 (404)
139 TIGR02988 YaaA_near_RecF S4 do 61.0 10 0.00022 31.6 3.4 23 600-622 35-58 (59)
140 cd00077 HDc Metal dependent ph 60.6 4.9 0.00011 36.7 1.6 35 170-204 2-44 (145)
141 PRK11790 D-3-phosphoglycerate 59.2 8.3 0.00018 44.6 3.5 33 797-829 339-371 (409)
142 PRK04374 PII uridylyl-transfer 58.5 14 0.00031 46.8 5.6 46 786-831 680-725 (869)
143 COG4341 Predicted HD phosphohy 57.7 16 0.00035 37.1 4.6 46 152-200 13-60 (186)
144 KOG1487 GTP-binding protein DR 57.5 4.3 9.4E-05 44.1 0.7 59 566-624 284-357 (358)
145 KOG1486 GTP-binding protein DR 56.4 11 0.00024 41.0 3.5 53 572-624 304-363 (364)
146 cd04930 ACT_TH ACT domain of t 55.7 19 0.00042 34.4 4.7 46 786-831 29-76 (115)
147 smart00363 S4 S4 RNA-binding d 54.8 12 0.00026 29.5 2.7 25 600-624 27-52 (60)
148 COG1977 MoaD Molybdopterin con 54.7 14 0.00031 33.2 3.5 29 596-624 51-79 (84)
149 TIGR03401 cyanamide_fam HD dom 53.9 19 0.00042 38.5 4.9 50 145-201 37-95 (228)
150 PRK03059 PII uridylyl-transfer 53.8 19 0.00041 45.7 5.6 35 795-829 677-711 (856)
151 cd01764 Urm1 Urm1-like ubuitin 52.6 26 0.00056 32.3 4.9 47 579-625 27-90 (94)
152 PRK00275 glnD PII uridylyl-tra 52.1 20 0.00043 45.8 5.4 34 796-829 704-737 (895)
153 cd04906 ACT_ThrD-I_1 First of 51.7 17 0.00036 32.5 3.4 28 799-828 4-31 (85)
154 PF13510 Fer2_4: 2Fe-2S iron-s 51.1 10 0.00022 33.9 2.0 56 566-622 4-79 (82)
155 PF01479 S4: S4 domain; Inter 50.4 12 0.00027 29.4 2.1 21 600-620 27-48 (48)
156 COG2316 Predicted hydrolase (H 50.4 19 0.00042 36.6 3.9 58 169-226 46-117 (212)
157 PRK10119 putative hydrolase; P 47.7 39 0.00084 36.3 6.0 52 148-202 6-62 (231)
158 TIGR00277 HDIG uncharacterized 47.7 19 0.00042 30.3 3.1 33 170-202 4-41 (80)
159 PRK00106 hypothetical protein; 44.8 19 0.00041 43.2 3.4 36 167-202 347-387 (535)
160 COG2150 Predicted regulator of 43.7 33 0.00071 34.8 4.3 35 796-830 95-129 (167)
161 PRK13480 3'-5' exoribonuclease 43.5 55 0.0012 36.7 6.7 74 124-201 106-196 (314)
162 PRK07569 bidirectional hydroge 43.5 36 0.00078 36.3 5.0 55 568-622 6-76 (234)
163 cd04937 ACT_AKi-DapG-BS_2 ACT 43.4 32 0.00069 28.7 3.7 31 799-829 4-37 (64)
164 COG1188 Ribosome-associated he 43.3 26 0.00057 32.8 3.4 27 600-626 35-61 (100)
165 PF14453 ThiS-like: ThiS-like 42.6 69 0.0015 27.1 5.4 50 571-624 6-55 (57)
166 TIGR00488 putative HD superfam 42.4 20 0.00044 35.6 2.8 31 172-202 10-45 (158)
167 PRK06349 homoserine dehydrogen 42.4 29 0.00063 40.4 4.4 32 798-829 350-381 (426)
168 COG1713 Predicted HD superfami 41.9 22 0.00048 36.9 3.0 34 172-205 19-57 (187)
169 TIGR00295 conserved hypothetic 40.5 27 0.00059 35.2 3.4 57 169-226 12-86 (164)
170 PF00498 FHA: FHA domain; Int 40.3 19 0.0004 30.2 1.8 23 600-622 43-67 (68)
171 cd00165 S4 S4/Hsp/ tRNA synthe 40.0 31 0.00066 27.9 3.1 24 600-623 27-51 (70)
172 cd04891 ACT_AK-LysC-DapG-like_ 39.3 43 0.00094 26.4 3.8 27 803-829 8-34 (61)
173 cd01806 Nedd8 Nebb8-like ubiq 38.6 76 0.0016 26.9 5.4 62 564-625 2-72 (76)
174 cd01809 Scythe_N Ubiquitin-lik 38.4 96 0.0021 26.0 6.0 61 564-624 2-71 (72)
175 cd04868 ACT_AK-like ACT domain 37.0 46 0.001 25.8 3.6 26 805-830 12-37 (60)
176 PRK08526 threonine dehydratase 36.2 49 0.0011 38.3 5.0 35 795-829 325-359 (403)
177 PF11976 Rad60-SLD: Ubiquitin- 35.8 69 0.0015 27.2 4.7 60 564-623 2-71 (72)
178 PRK11899 prephenate dehydratas 34.9 57 0.0012 36.0 5.0 36 796-831 194-229 (279)
179 COG4747 ACT domain-containing 34.4 51 0.0011 32.0 3.8 31 798-828 71-101 (142)
180 cd04913 ACT_AKii-LysC-BS-like_ 33.3 47 0.001 27.5 3.2 26 803-828 9-34 (75)
181 COG1078 HD superfamily phospho 33.1 22 0.00047 41.5 1.5 51 144-200 27-95 (421)
182 PRK13581 D-3-phosphoglycerate 32.7 38 0.00083 40.5 3.5 31 799-829 455-485 (526)
183 cd04922 ACT_AKi-HSDH-ThrA_2 AC 31.6 84 0.0018 25.6 4.4 25 804-828 12-36 (66)
184 TIGR00384 dhsB succinate dehyd 31.5 45 0.00098 35.2 3.4 48 575-622 19-82 (220)
185 PRK12704 phosphodiesterase; Pr 30.7 48 0.001 39.8 3.8 34 168-201 333-371 (520)
186 TIGR01327 PGDH D-3-phosphoglyc 29.6 35 0.00076 40.8 2.5 31 799-829 454-484 (525)
187 PTZ00305 NADH:ubiquinone oxido 29.3 82 0.0018 35.1 5.0 51 571-621 74-141 (297)
188 cd01803 Ubiquitin Ubiquitin. U 28.6 1.8E+02 0.0039 24.6 6.1 62 564-625 2-72 (76)
189 PRK12705 hypothetical protein; 27.8 49 0.0011 39.5 3.2 35 168-202 321-360 (508)
190 COG3603 Uncharacterized conser 27.6 53 0.0011 31.8 2.7 31 802-832 72-103 (128)
191 TIGR03319 YmdA_YtgF conserved 27.4 51 0.0011 39.5 3.3 32 170-201 329-365 (514)
192 cd04932 ACT_AKiii-LysC-EC_1 AC 27.2 66 0.0014 28.2 3.1 27 803-829 11-37 (75)
193 PRK11507 ribosome-associated p 26.9 70 0.0015 28.2 3.2 23 600-622 38-61 (70)
194 PRK07152 nadD putative nicotin 26.8 44 0.00095 37.7 2.5 34 169-202 195-233 (342)
195 cd04919 ACT_AK-Hom3_2 ACT doma 26.8 1.2E+02 0.0025 24.9 4.5 24 805-828 13-36 (66)
196 cd01805 RAD23_N Ubiquitin-like 25.5 1.5E+02 0.0032 25.4 5.1 63 564-626 2-75 (77)
197 cd04912 ACT_AKiii-LysC-EC-like 25.4 67 0.0015 27.8 2.9 30 803-832 11-40 (75)
198 KOG2663 Acetolactate synthase, 25.2 74 0.0016 34.6 3.6 32 798-829 79-110 (309)
199 cd04936 ACT_AKii-LysC-BS-like_ 25.1 80 0.0017 25.3 3.1 27 804-830 11-37 (63)
200 cd04923 ACT_AK-LysC-DapG-like_ 24.9 80 0.0017 25.3 3.1 27 804-830 11-37 (63)
201 cd04892 ACT_AK-like_2 ACT doma 24.8 1.2E+02 0.0025 24.0 4.1 25 805-829 12-36 (65)
202 PRK10885 cca multifunctional t 24.7 2.6E+02 0.0055 32.6 8.2 100 102-202 150-259 (409)
203 cd01763 Sumo Small ubiquitin-r 24.4 3.1E+02 0.0067 24.5 7.1 62 564-625 13-83 (87)
204 PF10584 Proteasome_A_N: Prote 23.8 18 0.00038 25.2 -0.8 16 562-577 2-17 (23)
205 cd04924 ACT_AK-Arch_2 ACT doma 23.2 1.5E+02 0.0032 24.0 4.5 24 805-828 13-36 (66)
206 cd04890 ACT_AK-like_1 ACT doma 22.9 79 0.0017 25.9 2.7 28 804-831 11-38 (62)
207 PF05153 DUF706: Family of unk 22.5 1E+02 0.0022 33.5 4.0 52 149-200 41-93 (253)
208 KOG1491 Predicted GTP-binding 22.1 76 0.0016 36.2 3.1 58 565-622 308-387 (391)
209 PRK05950 sdhB succinate dehydr 21.5 90 0.002 33.2 3.5 52 574-625 21-89 (232)
210 PF12917 HD_2: HD containing h 20.5 45 0.00098 35.4 1.0 99 171-278 30-142 (215)
211 PRK10622 pheA bifunctional cho 20.5 1.4E+02 0.003 34.6 4.9 34 797-830 298-331 (386)
212 cd04894 ACT_ACR-like_1 ACT dom 20.3 81 0.0018 27.4 2.2 35 799-833 3-37 (69)
213 cd04933 ACT_AK1-AT_1 ACT domai 20.1 1.1E+02 0.0024 27.2 3.2 27 803-829 11-37 (78)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=5.8e-172 Score=1481.46 Aligned_cols=635 Identities=37% Similarity=0.573 Sum_probs=576.6
Q ss_pred CCCChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 003276 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (834)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvE 202 (834)
.+++.+++.+.+. .|.++.+.. +.+|+.||.++|.||+|+||+|||+||++||.||++++||.++++||||||++|
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vE 80 (701)
T COG0317 5 GCVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIE 80 (701)
T ss_pred ccccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHh
Confidence 5566777777665 566666666 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccc
Q 003276 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (834)
Q Consensus 203 Dt~~~T~e~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~ 282 (834)
||+ +|.++|++.||++|+.||+||||++++++++. .+..|+||+||||+||++|+||++|||||||||||||.
T Consensus 81 Dt~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~~------~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~ 153 (701)
T COG0317 81 DTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSS------EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLK 153 (701)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccCc------cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCc
Confidence 999 89999999999999999999999988754322 34558999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003276 283 HMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362 (834)
Q Consensus 283 ~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~ 362 (834)
.++++||+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.|.+|+++++++...|+..|.++|
T Consensus 154 ~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~g 233 (701)
T COG0317 154 NLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG 233 (701)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ccccccceeEEEeEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccc
Q 003276 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 442 (834)
Q Consensus 363 ~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r 442 (834)
+.++|.||+||+||||+||++|+..|++|+|++||||||++.+ |||++||+||.+|+|+|+|
T Consensus 234 ------i~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~------------dCY~~LGiVH~~~kp~Pgr 295 (701)
T COG0317 234 ------IKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIP------------DCYTALGIVHTLWKPIPGE 295 (701)
T ss_pred ------CeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECChH------------HHHHHHHHHHhcCcCCCCc
Confidence 8999999999999999999999999999999999999999875 9999999999999999999
Q ss_pred ccccccCCCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccc
Q 003276 443 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (834)
Q Consensus 443 ~kDYIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (834)
||||||+||+||||||||||+++. |.++||||||++||..||+|+||||+||+++
T Consensus 296 FKDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~---------------------- 350 (701)
T COG0317 296 FDDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG---------------------- 350 (701)
T ss_pred cccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC----------------------
Confidence 999999999999999999999755 4799999999999999999999999999831
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEE
Q 003276 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 602 (834)
Q Consensus 523 ~~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~ak 602 (834)
......+.||++|++||++. + ++.||+|++|.|||+|+||||||+|++++||.||||+||||+|||++|++|+|||
T Consensus 351 -~~~~~~~~Wlr~lle~q~~~-~--d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 351 -SAYEEKIAWLRQLLEWQEES-A--DSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred -chhhHHHHHHHHHHHHHHhc-C--CcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 11345789999999999996 2 4689999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCCcccCCChhHHHhhcChHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCC
Q 003276 603 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGE 682 (834)
Q Consensus 603 vNg~~v~l~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~~v~T~~Ar~~Ir~~lr~~~~~~~~~~~~~~L~~~l~~~~~ 682 (834)
|||++|||+++|+|||+|||||+++. .|+++||+||+|++||+|||+|||++.+++.+..|+++|+++|.+++.
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~ 500 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL 500 (701)
T ss_pred ECCEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864 379999999999999999999999999999999999999999986544
Q ss_pred Cc------------ccccccccCCCChhHHHHHHHHHhhcCCCCcccccccccCC--cCCCCCcccCCCC------ccee
Q 003276 683 ES------------EVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDN--ASLWAPKVNGKHN------KRVH 742 (834)
Q Consensus 683 ~~------------~~ddL~~~ig~g~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~v~V~G~~~------~cc~ 742 (834)
+. +.||||+++|.|+.+..++++.+. ...... ..+... .....+.|.|.+| +||+
T Consensus 501 ~~~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~-~~~~~~----~~~~~~~~~~~~~~~v~G~~~l~~~~a~CC~ 575 (701)
T COG0317 501 PKELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQ-KLNEPP----LEKLSRKSIGKGGVLVEGVGNLLTHLAKCCQ 575 (701)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHH-hccccc----hhhhhccccCCCceEEeccCCceeEeecCCC
Confidence 21 459999999999999999998886 321111 111110 0135678899776 8999
Q ss_pred ecCCC-eeEEeecCCCceEEE--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeCcccHHHHHHHHHH
Q 003276 743 YVGSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALA 818 (834)
Q Consensus 743 PVPGD-IvG~its~GrGVtvh--dC~ni~~~~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~~~DR~GlLadIt~vIa 818 (834)
|+||| |||||| +|+||+|| ||||+.++.. ..||||++ |+|+... +.|.++|.|++.||+|+|++|+++|+
T Consensus 576 PipGD~IvG~it-~g~Gi~iHr~dC~~~~~~~~--~~per~i~---v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~ 649 (701)
T COG0317 576 PVPGDPIVGYIT-KGRGISIHRQDCPNFLQLAG--HAPERVID---VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLA 649 (701)
T ss_pred CCCCCcEEEEEe-cCCcEEEehhcChhHHHhhh--cCcceEEE---EEecCCCCcceEEEEEEEEccccchHHHHHHHHH
Confidence 99999 999995 99999999 9999877643 57999999 9998774 56889999999999999999999999
Q ss_pred hCCCceeEEEEecC
Q 003276 819 TVGVTICSCVVSGQ 832 (834)
Q Consensus 819 ~~~iNI~sv~~~t~ 832 (834)
+.++||.++++.++
T Consensus 650 ~~~~ni~~v~~~~~ 663 (701)
T COG0317 650 NEKINVLGVNTRSD 663 (701)
T ss_pred hCCCceEEeecccc
Confidence 99999999999764
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=1.6e-165 Score=1449.16 Aligned_cols=647 Identities=26% Similarity=0.428 Sum_probs=568.3
Q ss_pred CChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccC
Q 003276 125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT 204 (834)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvEDt 204 (834)
+..+++.+.+. .|+ ++|.+.|++||.||.++|.| |+||||||+||++||.||++|+||.++|+||||||+||||
T Consensus 15 ~~~~~l~~~~~---~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt 88 (743)
T PRK10872 15 FDPDKWIASLG---ITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADAN 88 (743)
T ss_pred hhHHHHHHHHH---hhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcC
Confidence 34444444432 677 88999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccC
Q 003276 205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM 284 (834)
Q Consensus 205 ~~~T~e~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~ 284 (834)
+ +|.++|++.||++|+.||+||||++++....... ..+.+..|+|+||||||||++|+||+||||||||||||||.++
T Consensus 89 ~-~t~e~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~-~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~ 166 (743)
T PRK10872 89 V-VSEDVLRESVGKSIVNLIHGVRDMDAIRQLKATH-NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDA 166 (743)
T ss_pred C-CCHHHHHHHHCHHHHHHHHHHHHHHHhhhhhccc-ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcC
Confidence 9 8999999999999999999999988764211100 0123456999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003276 285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL 364 (834)
Q Consensus 285 ~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l 364 (834)
|++||++||+|||+||||||||||||+||||||||||+||+|++|+.|++.|.+.+.+|+.+++.++..|++.|.+.
T Consensus 167 ~~~kq~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~--- 243 (743)
T PRK10872 167 PEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAE--- 243 (743)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeEEEeEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003276 365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (834)
Q Consensus 365 ~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~k 444 (834)
+++++|.||+||+||||+||++++.+|++|+|++|+||||++. .|||++||+||++|+|+|++||
T Consensus 244 ---~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~~------------~dCY~vLg~ih~~~~pip~~fk 308 (743)
T PRK10872 244 ---GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAERL------------QDCYAALGIVHTHYRHLPDEFD 308 (743)
T ss_pred ---CCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECCH------------HHHHHHHHHHHhhccCCcchhh
Confidence 4889999999999999999999999999999999999999865 5999999999999999999999
Q ss_pred ccccCCCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccchh
Q 003276 445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA 524 (834)
Q Consensus 445 DYIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (834)
|||++||+||||||||+|++++ +.++||||||..||.+||+|+||||+||++..+ .+. ..
T Consensus 309 DYIa~PK~NGYqSLHttv~~~~---g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~-------------~~~----~~ 368 (743)
T PRK10872 309 DYVANPKPNGYQSIHTVVLGPG---GKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAA-------------GGG----RS 368 (743)
T ss_pred hcccCCCCCCcceeEEEEECCC---CcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCc-------------ccc----cc
Confidence 9999999999999999998644 479999999999999999999999999973200 000 11
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEEC
Q 003276 525 NIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN 604 (834)
Q Consensus 525 ~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvN 604 (834)
..+.+++||++|+|||++. .++.||++.+|.|||+|+||||||+|+++.||+||||+||||+|||++|++|+||+||
T Consensus 369 ~~~~~~~wLr~lle~~~~~---~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvn 445 (743)
T PRK10872 369 GHEDRIAWLRKLIAWQEEM---ADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIG 445 (743)
T ss_pred chHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEEC
Confidence 2345689999999999984 2578999999999999999999999999999999999999999999999999999999
Q ss_pred CEecCCCccCCCCCeEEEEecCCCCCCcccCCChhHHH----hhcChHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q 003276 605 GNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQAALSASEITADTVGDFVADS 680 (834)
Q Consensus 605 g~~v~l~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~----~v~T~~Ar~~Ir~~lr~~~~~~~~~~~~~~L~~~l~~~ 680 (834)
|++|||+++|++||+|||+|++++. |+++||+ ||+|+|||+|||+|||++++++.++.|+++|+++|+++
T Consensus 446 g~~v~l~~~L~~GD~VeIits~~~~------Ps~dWL~~~lg~v~T~rAR~kIr~~~k~~~~~~~i~~Gr~lL~k~l~~~ 519 (743)
T PRK10872 446 GRIVPFTYQLQMGDQIEIITQKQPN------PSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHL 519 (743)
T ss_pred CEECCCCcCCCCCCEEEEEeCCCCC------CChhHhccccCeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653 6999999 99999999999999999999999999999999999887
Q ss_pred CCC--------------cccccccccCCCChhHHHHHHHHHhhcCCCCc-cc------ccccc----c--CCcCCCCCcc
Q 003276 681 GEE--------------SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVR-NS------KAVCS----D--DNASLWAPKV 733 (834)
Q Consensus 681 ~~~--------------~~~ddL~~~ig~g~~~~~~vl~~~~~~~~~~~-~~------~~~~~----~--~~~~~~~v~V 733 (834)
+++ .+.||||+++|.|+.++.+++..+........ .. ..+.+ . .......+.|
T Consensus 520 ~~~~~~~~~~l~~~~~~~~~ddl~~~iG~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I 599 (743)
T PRK10872 520 GISLKEAEKHLLPRYNFNSLDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYTPQNRSKDNGRVVV 599 (743)
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHhcCCCCCHHHHHHHHHHHhcccccccchhhhhhhhcccccccccccCCCCeEEE
Confidence 642 14599999999999999999888743110000 00 00100 0 0001112678
Q ss_pred cCCCC------cceeecCCC-eeEEeecCCCceEEE--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEE
Q 003276 734 NGKHN------KRVHYVGSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVC 803 (834)
Q Consensus 734 ~G~~~------~cc~PVPGD-IvG~its~GrGVtvh--dC~ni~~~~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~~ 803 (834)
.|.++ .||+||||| |||||| +|+||+|| +|||+.++.+ .+|+|||+ |+|+... ..|+++|.|++
T Consensus 600 ~G~~~~lv~~A~CC~PiPGD~IvG~iT-rGrGI~VHr~dC~nl~~l~~--~~~eR~I~---V~W~~~~~~~~~v~I~I~~ 673 (743)
T PRK10872 600 EGVGNLMHHIARCCQPIPGDEIVGFIT-QGRGISIHRADCEQLAELRS--HAPERIVD---AVWGESYSSGYSLVVRVTA 673 (743)
T ss_pred ecCCCceEEECCCCCCCCCCcEEEEEE-CCCCEEEEcccChhhHhhhh--cCCceEEE---eEecCCCCceeEEEEEEEE
Confidence 88874 899999999 999995 99999999 9999977642 47899999 9997542 35889999999
Q ss_pred eCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 804 IDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 804 ~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
.||+|+|++|+++|++.++||.+++++++
T Consensus 674 ~Dr~GlL~dIt~~is~~~~nI~~v~~~~~ 702 (743)
T PRK10872 674 NDRSGLLRDITTILANEKVNVLGVASRSD 702 (743)
T ss_pred cCCCCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 99999999999999999999999998754
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=4.6e-163 Score=1433.16 Aligned_cols=630 Identities=32% Similarity=0.527 Sum_probs=564.8
Q ss_pred HhHhhhh-cCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHH
Q 003276 132 EDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFE 210 (834)
Q Consensus 132 ~~l~~~~-~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvEDt~~~T~e 210 (834)
+.|.... .|+++.+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++|+||||||++|||+ +|.+
T Consensus 5 ~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~-~t~e 83 (702)
T PRK11092 5 ESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTP-ATYQ 83 (702)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCC-CCHH
Confidence 3343333 7999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccCCCCchh
Q 003276 211 RIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQS 290 (834)
Q Consensus 211 ~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~~~~kq~ 290 (834)
+|++.||++|+.||+||||++++.. . .....|+|++||||+||++|+||++|||||||||||||..+|+++|+
T Consensus 84 ~i~~~FG~~Va~lV~gvTk~~~l~~---~----~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~ 156 (702)
T PRK11092 84 DMEQLFGKSVAELVEGVSKLDKLKF---R----DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRR 156 (702)
T ss_pred HHHHHHCHHHHHHHHHHHhhccccc---c----chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHH
Confidence 9999999999999999999876532 1 13456899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce
Q 003276 291 SIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVK 370 (834)
Q Consensus 291 ~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~ 370 (834)
+||+||++||||||+||||++||||||||||+||+|++|+.|++.|.+.+.+|+.+++.+...|++.|.+. +++
T Consensus 157 ~iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~------~i~ 230 (702)
T PRK11092 157 RIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEA------GIP 230 (702)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 489
Q ss_pred eEEEeEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCC
Q 003276 371 TEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATP 450 (834)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~kDYIa~P 450 (834)
++|.||.||+||||+||++|+.+|++|+|++|+||||++. .|||++||+||++|+|+|++|||||+.|
T Consensus 231 ~~i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~~------------~dCY~~lg~ih~~~~pip~~~kDyIa~P 298 (702)
T PRK11092 231 CRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDDS------------DTCYRVLGQMHSLYKPRPGRVKDYIAIP 298 (702)
T ss_pred EEEEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECCH------------HHHHHHHHHHHhcCCCCcCccccccCCC
Confidence 9999999999999999999999999999999999999865 5999999999999999999999999999
Q ss_pred CCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccchhhHHHHH
Q 003276 451 KPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRI 530 (834)
Q Consensus 451 K~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (834)
|+||||||||+|+++. +.++||||||..||.+||+|+||||+||++.. .. .......+
T Consensus 299 K~NgYqSLHt~v~g~~---g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~----------------~~---~~~~~~~~ 356 (702)
T PRK11092 299 KANGYQSLHTSMIGPH---GVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGE----------------TG---TTAQIRAQ 356 (702)
T ss_pred CCCCCceEEEEEECCC---CcEEEEEEEcHHHHHHHhhhhHhhhhhccCCC----------------cc---chhHHHHH
Confidence 9999999999998644 47999999999999999999999999997310 00 11122348
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCC
Q 003276 531 SWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP 610 (834)
Q Consensus 531 ~wl~~l~~~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l 610 (834)
.||++|++||++. .++.||++.+|.|||+|+||||||+|++++||.||||+||||+|||++|++|+||||||++|||
T Consensus 357 ~wlr~ll~~~~~~---~~~~ef~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL 433 (702)
T PRK11092 357 RWMQSLLELQQSA---GSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPL 433 (702)
T ss_pred HHHHHHHHHHhhc---CChHHHHHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECCC
Confidence 8999999999974 2578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCeEEEEecCCCCCCcccCCChhHHHhhcChHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcC-CC------
Q 003276 611 THVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG-EE------ 683 (834)
Q Consensus 611 ~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~~v~T~~Ar~~Ir~~lr~~~~~~~~~~~~~~L~~~l~~~~-~~------ 683 (834)
+|+|+|||+|||+|++++. |+++||+||+|+|||++||+|||++++++.+++|+++|+++|+.++ .+
T Consensus 434 ~~~L~~Gd~VeIiT~~~~~------P~~dWL~~v~T~rAr~kIr~~~r~~~~~~~i~~Gr~lL~~~l~~~~~~~~~~~~~ 507 (702)
T PRK11092 434 SQPLTSGQTVEIITAPGAR------PNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLDEIPQEN 507 (702)
T ss_pred CccCCCCCEEEEEeCCCCC------CChHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCChhhcCHHH
Confidence 9999999999999998643 6899999999999999999999999999999999999999988653 10
Q ss_pred ----------cccccccccCCCChhHHHHHHHHHhhcCCCCcccccccccCCcCCCCCcccCCCC------cceeecCCC
Q 003276 684 ----------SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGKHN------KRVHYVGSK 747 (834)
Q Consensus 684 ----------~~~ddL~~~ig~g~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~G~~~------~cc~PVPGD 747 (834)
.+.||||+++|.|+.++.++++.+..... .... +. .....+.|.|.++ .||+|||||
T Consensus 508 l~~~~~~~~~~~~d~l~~~iG~g~i~~~~v~~~~~~~~~----~~~~-~~--~~~~~i~I~G~~~~~v~~A~CC~PiPGD 580 (702)
T PRK11092 508 IQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLLGDDA----ELPT-AT--SSHGKLPIKGADGVLITFAKCCRPIPGD 580 (702)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCCCHHHHHHHhhhhcc----cccc-cc--cCCCceEEeccCCceEEeCCCCCCCCCC
Confidence 14589999999999999999988743211 0000 11 1123467888775 899999999
Q ss_pred -eeEEeecCCCceEEE--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeCcccHHHHHHHHHHhCCCc
Q 003276 748 -AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATVGVT 823 (834)
Q Consensus 748 -IvG~its~GrGVtvh--dC~ni~~~~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~~~DR~GlLadIt~vIa~~~iN 823 (834)
|+|||| +|+||+|| +|||+.++. .+|+||++ |+|+... +.|++.|.|++.||+|+|++|+++|++.++|
T Consensus 581 ~IvG~it-~grGI~VHr~dC~nl~~l~---~~~er~i~---v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~n 653 (702)
T PRK11092 581 PIIAHVS-PGKGLVIHHESCRNIRGYQ---KEPEKFMA---VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSN 653 (702)
T ss_pred cEEEEEE-CCCCEEEECcCCchhhhhh---cCcceeEE---eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCC
Confidence 999994 99999999 999997763 46899999 9997543 3588899999999999999999999999999
Q ss_pred eeEEEEecC
Q 003276 824 ICSCVVSGQ 832 (834)
Q Consensus 824 I~sv~~~t~ 832 (834)
|.++++.++
T Consensus 654 I~~v~~~~~ 662 (702)
T PRK11092 654 IQSLNTEEK 662 (702)
T ss_pred eEEEEEEEc
Confidence 999998654
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=9e-154 Score=1358.27 Aligned_cols=614 Identities=38% Similarity=0.593 Sum_probs=549.4
Q ss_pred HHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHhhhChHHHHHHhhhcccc
Q 003276 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (834)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvEDt~~~T~e~I~~~FG~~Va~LV~gvTkvs 231 (834)
|+.||.++|.||+|++|+||+.||++||.+|+++++|.++++||||||++|||+ +|.++|++.||++|+.||++|||++
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~-~t~e~i~~~FG~~Va~lV~~vTk~~ 79 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTP-VTEEEIEEEFGEEVAELVDGVTKIT 79 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCC-CCHHHHHHHHCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999 8999999999999999999999987
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccCCCCchhhHHHHHHHHHHHHHhhhcHHH
Q 003276 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311 (834)
Q Consensus 232 ~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ 311 (834)
++.. . .....|+|++||||++|+.|+||++|||||||||||+|..+|+++|++||+||++||||||+||||++
T Consensus 80 ~~~~---~----~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ 152 (683)
T TIGR00691 80 KLKK---K----SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSS 152 (683)
T ss_pred cccc---c----hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 7542 1 13456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeEEEeEecChHHHHHHHHhcC
Q 003276 312 IKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSR 391 (834)
Q Consensus 312 ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~rk~ 391 (834)
||+|||||||+||+|++|+.|++.|.+.+.+++.+++.+...|++.|.+. +++++|+||.|++||||+||++++
T Consensus 153 ik~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~------~i~~~i~~R~K~~~Si~~Km~~k~ 226 (683)
T TIGR00691 153 IKTELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDS------GIEAELEGRSKHLYSIYQKMTRKG 226 (683)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCceEEEeeeCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999876 478999999999999999999999
Q ss_pred CCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCcceeEEEEeccCCCcce
Q 003276 392 GSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (834)
Q Consensus 392 ~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~kDYIa~PK~NGYqSLHt~V~~~~~~~~~ 471 (834)
.+|++|+|++|+||||++. .|||.+||+||++|+|+|++|||||++||+||||||||+|.+++ +.
T Consensus 227 ~~~~~i~Di~~~RIi~~~~------------~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~---g~ 291 (683)
T TIGR00691 227 QNFDEIHDLLAIRIIVKSE------------LDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPK---GL 291 (683)
T ss_pred CCHHHcccceeEEEEECCH------------HHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCC---CC
Confidence 9999999999999998764 59999999999999999999999999999999999999998533 48
Q ss_pred eEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHhhhcCCCchh
Q 003276 472 RLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSRE 551 (834)
Q Consensus 472 ~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~~~~~~~~~~e 551 (834)
++||||||..||.|||+|+|+||+||++.. + ......++.||++|++||++. .++.|
T Consensus 292 ~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~--------------~------~~~~~~~~~wl~~~~~~~~~~---~~~~~ 348 (683)
T TIGR00691 292 PVEIQIRTEDMDRVAEYGIAAHWIYKEGNP--------------Q------KEALIDDMRWLNYLVEWQQES---ANFFE 348 (683)
T ss_pred EEEEEEEehHHHHHHHHHHHHHHhhcCCCC--------------c------chhHHHHHHHHHHHHHHHhhc---ccchh
Confidence 999999999999999999999999997310 0 011345689999999999985 25789
Q ss_pred hhhhhcccccCCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCCCC
Q 003276 552 FVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSK 631 (834)
Q Consensus 552 f~~~~k~dl~~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~~~~ 631 (834)
|++.+|.|||+++||||||+|+++.||+||||+||||+|||++|++|++|+|||+.|||+++|++||+|||+|++++.
T Consensus 349 ~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~~-- 426 (683)
T TIGR00691 349 FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNSN-- 426 (683)
T ss_pred HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccCCChhHHHhhcChHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCCCc-----------------ccccccccCC
Q 003276 632 SAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES-----------------EVEDLSDGSK 694 (834)
Q Consensus 632 ~~~~p~~~WL~~v~T~~Ar~~Ir~~lr~~~~~~~~~~~~~~L~~~l~~~~~~~-----------------~~ddL~~~ig 694 (834)
|+++||+||+|+|||++||+|||++++++.++.|+++|+++|+.++++. +.||||+++|
T Consensus 427 ----P~~dWL~~v~T~rAR~kIr~~~k~~~r~~~i~~G~~lLek~l~~~~~~~~~~~~~~~~~l~~~~~~~~ddl~~~iG 502 (683)
T TIGR00691 427 ----PSVIWLNFVVTSKARNKIRQWLKKLRREVAISEGKNILEKELGRSGLKLEDLTQYIQKRLNRLRFKKLSELLAEIG 502 (683)
T ss_pred ----CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 6899999999999999999999999999999999999999998776531 4589999999
Q ss_pred CChhHHHHHHHHHhhcCCCCcc---ccccc-ccC-CcCCCCCcccCCCC------cceeecCCC-eeEEeecCCCceEEE
Q 003276 695 QDKPLWEKILMNVVQMSSPVRN---SKAVC-SDD-NASLWAPKVNGKHN------KRVHYVGSK-AEGELSSQENSFAKM 762 (834)
Q Consensus 695 ~g~~~~~~vl~~~~~~~~~~~~---~~~~~-~~~-~~~~~~v~V~G~~~------~cc~PVPGD-IvG~its~GrGVtvh 762 (834)
.|+..+.++++.+......... ...+. +.. ......+.|.|.++ .||+|+||| |+||+ |+|+||+||
T Consensus 503 ~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~~v~~A~CC~PvPGD~IiG~i-t~g~Gi~VH 581 (683)
T TIGR00691 503 KGNFSSKEVAKLLAQNNSKWQALTKPLKFAFSPKVFENSSFESIEGIEITKIVIAKCCSPIPGDPIIGIV-TKGKGLSVH 581 (683)
T ss_pred CCCCCHHHHHHHHHHhhhcccccchhhhcccccccccCCCceeeecCCCceeEECCCCCCCCCCcEEEEE-ECCCCEEEE
Confidence 9999999999988432110000 00010 000 01122467888774 899999999 99999 499999999
Q ss_pred --ecCCccchhhhCCCccccccccccccCCC-CCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 763 --MHANVPMYKEVLPGLESWQASKIATWHNL-EGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 763 --dC~ni~~~~e~~~~~er~i~~~~v~W~~~-~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
+|+|+.++ .++||++ |+|+.. .+.|+++|.|++.||+|+|++|+++|++.++||.+++++++
T Consensus 582 r~dC~nl~~~-----~~er~I~---v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~ 646 (683)
T TIGR00691 582 HKDCKNLKNY-----KQEKIIE---VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY 646 (683)
T ss_pred ccCchhhhhc-----CcccEEE---EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 99999754 3599999 999754 23588899999999999999999999999999999998654
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-79 Score=652.90 Aligned_cols=429 Identities=33% Similarity=0.474 Sum_probs=362.6
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCcccCC-CcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHhhhChH
Q 003276 141 LSPNELELVRRALMLAFEAHDGQKRRSG-EPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (834)
Q Consensus 141 ~~~~~~~~i~~A~~~A~~aH~gQ~RksG-ePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvEDt~~~T~e~I~~~FG~~ 219 (834)
+.-.+-+++-+|+.+|+.+|+||+|+++ +||+.||+.+|.||+.+++|..+++||+||||||||. +|+++|++.||.+
T Consensus 69 ~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~-~S~eeI~~~FG~g 147 (543)
T KOG1157|consen 69 HKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTF-MSYEEILRHFGTG 147 (543)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhcc-CCHHHHHHHhCcc
Confidence 3445678899999999999999999965 5999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccCCCCchhhHHHHHHHH
Q 003276 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQV 299 (834)
Q Consensus 220 Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~~~~kq~~iA~ETl~i 299 (834)
|++||+++|+++.+.+..+. ...|.++++ |+.+++. .|++||||||||||||+|.++||-+|++.++||+.|
T Consensus 148 Va~LV~EvtddKnL~K~eRk------~l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfI 219 (543)
T KOG1157|consen 148 VADLVEEVTDDKNLSKLERK------NLTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFI 219 (543)
T ss_pred HHHHHHHHhcccchhHHHHH------HHHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHH
Confidence 99999999999888765433 224778888 6777764 999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeEEEeEecC
Q 003276 300 FAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKE 379 (834)
Q Consensus 300 yaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~ 379 (834)
|||+|+++|++..+.+||+|+|+|++|..|.++..+|+.... +..|+..+..|++.|...++ ..+-|.||.|+
T Consensus 220 wapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~--~~mi~~~~~~l~~~l~~a~i-----~~~~i~gr~ks 292 (543)
T KOG1157|consen 220 WAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFD--EAMITSAIEKLEQALKKAGI-----SYHVIKGRHKS 292 (543)
T ss_pred hhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccc-----eeEEEecchhh
Confidence 999999999999999999999999999999999999998776 67888888889888877652 23689999999
Q ss_pred hHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCcceeE
Q 003276 380 PYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLH 459 (834)
Q Consensus 380 ~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~kDYIa~PK~NGYqSLH 459 (834)
.||||+||.|++...+||+||.|+|+||++. .|||+++|+||.+|+.+|++.||||+.||.|||||||
T Consensus 293 ~ysi~~kmlk~~~~~dei~di~glr~i~~~~------------~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh 360 (543)
T KOG1157|consen 293 LYSIYKKMLKKKLTPDEIHDIHGLRLIVDNE------------SDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLH 360 (543)
T ss_pred HHHHHHHHHhcCCCHHHhhhhcceEEEEcCc------------hHHHHHHHHHHHHHHhCcchhhhhhcCccccccceee
Confidence 9999999999999999999999999999975 4999999999999999999999999999999999999
Q ss_pred EEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 003276 460 TTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREW 539 (834)
Q Consensus 460 t~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~ 539 (834)
|+|...+ ..|+||||||.+||.-||+|.|+||.||++. . +....+++.|.+....|
T Consensus 361 ~~v~~d~---~~plevqirt~em~~~a~~g~aah~~yk~g~-----------------~----~~~~~q~~~~~~~~~~~ 416 (543)
T KOG1157|consen 361 TVVMVDG---TRPLEVQIRTMEMHLQAEFGFAAHWRYKEGK-----------------T----SSFVLQMVEWARWVVTW 416 (543)
T ss_pred eEEecCC---cceeEEEEeeeccccccccchhhHhhhhcCC-----------------C----CHHHHHHHHHHHHHHHH
Confidence 9997643 4799999999999999999999999999731 1 33456789999999999
Q ss_pred HHhhhc-CCCchhhhhhhcc-cccCCceeeecCCC----------------cEEeCCCCCcHhHHHhhccccccc-----
Q 003276 540 QEEFVG-NMTSREFVDTITR-DLLGSRVFVFTPRG----------------EIKNLPKGATVVDYAYMIHTEIGN----- 596 (834)
Q Consensus 540 ~~~~~~-~~~~~ef~~~~k~-dl~~~~V~VftP~G----------------~i~~lp~gaT~lDfAy~ih~~~g~----- 596 (834)
.-+... +.+|. --.+.|. .--.|++|.+.|++ .+-++|+.+|++|.--.-.+.-..
T Consensus 417 ~~~~~~kd~ss~-~~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~ 495 (543)
T KOG1157|consen 417 HAEIMSKDISSI-KSSSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQ 495 (543)
T ss_pred HHHHHhcccccc-cccccCCCCccccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHHHhhccCCCCccchhhhc
Confidence 876521 11111 0111221 22368899999975 245689999999985332221000
Q ss_pred ---ceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 597 ---KMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 597 ---~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
....-+.|. ++.+.++.||+||....
T Consensus 496 ~~~e~lr~~~~~---d~~~k~~m~d~~~~~p~ 524 (543)
T KOG1157|consen 496 IPAEELRPRLNQ---DLKYKLKMGDVVELTPH 524 (543)
T ss_pred CcHHHhhhhhcc---chhHHhhhcchhhcCCC
Confidence 122334453 88899999999998654
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=3.8e-39 Score=317.48 Aligned_cols=153 Identities=55% Similarity=0.849 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHhhhChHHHHHHhhhcccc
Q 003276 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (834)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvEDt~~~T~e~I~~~FG~~Va~LV~gvTkvs 231 (834)
|+.||.++|.||++++|+||+.||++||.+|.++|+|+++++||||||++|||. .+ ++|++.||++|+++|.++|+++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~-~~-~~i~~~fg~~V~~lV~~lt~~~ 78 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTE-TT-EDIEERFGEDVADLVDALTKIK 78 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS----HHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcC-CH-HHHHHccChHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999996 55 9999999999999999999988
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccCCCCchhhHHHHHHHHHHHHHhhhcHH
Q 003276 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMY 310 (834)
Q Consensus 232 ~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~ 310 (834)
.+.+... ......+.+++|+||++|++|+||++|||||||||||++...|+++++++|+||+++|+|||+|||||
T Consensus 79 ~~~~~~~----~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 79 KLSKKPW----EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp TS-HH-------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred ccccccc----hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 7654311 12456788999999999999999999999999999999999999999999999999999999999998
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.94 E-value=1.4e-26 Score=216.97 Aligned_cols=110 Identities=32% Similarity=0.448 Sum_probs=91.0
Q ss_pred eEecChHHHHHHHHhcCC---CCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCC
Q 003276 375 SVCKEPYSIYKAVLKSRG---SINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPK 451 (834)
Q Consensus 375 ~R~K~~ySI~~Km~rk~~---~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~kDYIa~PK 451 (834)
+|+|+++|+++|+.|++. .+.+|+|++|+|||+.... |||.++++|++.|.+.+.+++|||+.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~------------d~~~v~~~l~~~~~~~~~~~~d~i~~~~ 68 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPD------------DCYKVLGLLHKLFDVKIDRSKDYIANPK 68 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCC------------HHHHHHHHHHTHSSCEEEEEEETTTT--
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHH------------HHHHHHHHHHHcCCcccccccccccccc
Confidence 699999999999999874 7899999999999987764 9999999999999999999999999999
Q ss_pred CCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCc
Q 003276 452 PNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (834)
Q Consensus 452 ~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~ 498 (834)
.|||||+|++|.......+.++||||||.+||.|||..| ||.||.
T Consensus 69 ~~GYrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~ 113 (115)
T PF04607_consen 69 SNGYRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKS 113 (115)
T ss_dssp TTS--EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHC
T ss_pred cCCcEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCC
Confidence 999999999993222345689999999999999999555 555553
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.93 E-value=3.5e-26 Score=218.83 Aligned_cols=123 Identities=32% Similarity=0.507 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhcccccccceeEEEeEecChHHHHHHHHhcCCCC---CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHH
Q 003276 351 NKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSI---NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYH 427 (834)
Q Consensus 351 ~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~---~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~ 427 (834)
...|++.|.+.+.. +..+.|.+|+|+++|+++|+.++.... ++|+|++|+|||++.. +|||.
T Consensus 4 ~~~l~~~L~~~~~~---~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~~------------~d~~~ 68 (129)
T cd05399 4 LEEIADLLRDAGII---GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLFV------------DDCYR 68 (129)
T ss_pred HHHHHHHHHHcCCC---CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeCH------------HHHHH
Confidence 34455666554300 126899999999999999999998777 9999999999998754 69999
Q ss_pred HHHHhhcccccccccccccccCCCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHH
Q 003276 428 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAER 488 (834)
Q Consensus 428 vlg~ih~~~~p~p~r~kDYIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~ 488 (834)
+++.|++.|++.|++++|||+.||+|||||+|++|..+....+.++||||||..||.|||.
T Consensus 69 v~~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 69 VLDLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999954221135899999999999999984
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.93 E-value=1e-25 Score=231.61 Aligned_cols=116 Identities=34% Similarity=0.441 Sum_probs=103.0
Q ss_pred eEEEeEecChHHHHHHHHhcCCCC------CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003276 371 TEIRSVCKEPYSIYKAVLKSRGSI------NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (834)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~------~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~k 444 (834)
..|++|+|++.||..|++||+.++ ++|+||+|+||+ |.+.+|.|.+..+|.+......-..|
T Consensus 53 e~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~------------c~F~~DI~~v~~~l~~~~d~~iv~~k 120 (231)
T COG2357 53 EHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRII------------CQFVDDIYRVVDLLKSRKDFTIVEEK 120 (231)
T ss_pred HHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEe------------eehHhhHHHHHHHHhcccCccchhHH
Confidence 579999999999999999999543 689999999998 45668999999999987766667899
Q ss_pred ccccCCCCCCcceeEEEE-ecc---CCCcceeEEEEEechhHHHHHHHHHHhhccCCc
Q 003276 445 DYIATPKPNGYQSLHTTL-IPF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (834)
Q Consensus 445 DYIa~PK~NGYqSLHt~V-~~~---~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~ 498 (834)
|||.+||+|||||+|++| +|- .+...+.+||||||.+||.||++.|...|+|.+
T Consensus 121 Dyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~l~YKy~~ 178 (231)
T COG2357 121 DYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHKLRYKYGG 178 (231)
T ss_pred HHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999 552 245568999999999999999999999999986
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.69 E-value=2.2e-17 Score=138.39 Aligned_cols=60 Identities=53% Similarity=0.854 Sum_probs=58.0
Q ss_pred eeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 565 V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
|+||+|||++++||+|+||+||||+||+++|+++++|+|||+.++|+++|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999998
No 11
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.21 E-value=1.2e-11 Score=108.24 Aligned_cols=52 Identities=33% Similarity=0.415 Sum_probs=49.7
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv-------Ng~~v~l~~~L~~gd~VeIit 624 (834)
+.+.||+|||+.||||+||+++++.+..|+| +|+.|+++++|++||+|||++
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 7999999999999999999999999998886 999999999999999999985
No 12
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.14 E-value=3.2e-11 Score=105.97 Aligned_cols=51 Identities=37% Similarity=0.622 Sum_probs=47.4
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceEE---EEECCEecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMVA---AKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~~---akvNg~~v~l~~~L~~gd~VeIit 624 (834)
+.+.||+|+|+.||||+||+++|+.++. ++ ||+.++++++|++||+|+|+|
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 5899999999999999999999999664 46 999999999999999999997
No 13
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.87 E-value=5.2e-09 Score=86.48 Aligned_cols=60 Identities=63% Similarity=1.042 Sum_probs=57.3
Q ss_pred eeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 565 V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
||||+|+|+.+++|.|.|+.|++..++..+....+++++||+.++++++|.+||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 689999999999999999999999999888888999999999999999999999999986
No 14
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.44 E-value=4.7e-07 Score=73.19 Aligned_cols=58 Identities=45% Similarity=0.779 Sum_probs=54.3
Q ss_pred eecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 567 VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
++.++|+.+++|+|+|+.|++..+|.......+++++||++++|+++|.+||.|+++|
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 5668899999999999999999999988889999999999999999999999999986
No 15
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.43 E-value=3e-07 Score=80.95 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=49.2
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceEEEEECC-EecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-NLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg-~~v~l~~~L~~gd~VeIit 624 (834)
+.+.||+|+|+.|||++||+++....+.|.|-| +.+.+++.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 689999999999999999999999999999987 8999999999999999975
No 16
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.33 E-value=3.6e-07 Score=103.85 Aligned_cols=52 Identities=33% Similarity=0.551 Sum_probs=47.7
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceE---EEEECCEecCCCccCCCCCeEEEEec
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMV---AAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~---~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
+.+.||+|+|+.||||.||+++|+.++ +++ +++.++++|+|++||+|+|+|+
T Consensus 341 ~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 341 DAFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVST 395 (396)
T ss_pred eeEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEeC
Confidence 399999999999999999999999976 445 7899999999999999999985
No 17
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.26 E-value=2.4e-06 Score=69.46 Aligned_cols=58 Identities=43% Similarity=0.596 Sum_probs=54.2
Q ss_pred eecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 567 VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
+..|+|+.+.+|.|+|+.|+|+.++...+...+++++||++++|.+++.+|+.||+++
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 5568899999999999999999999988889999999999999999999999999987
No 18
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.02 E-value=1.2e-05 Score=81.79 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=56.9
Q ss_pred hcCCcccCCC--cccchHHHHHHHHHHcCCCHHHHHHHhhccc---cccCCC-------------CCHHHHHhhhChHHH
Q 003276 160 HDGQKRRSGE--PFIIHPVEVARILGELELDWESIAAGLLHDT---VEDTNV-------------VTFERIEEEFGATVR 221 (834)
Q Consensus 160 H~gQ~RksGe--PYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDv---vEDt~~-------------~T~e~I~~~FG~~Va 221 (834)
+.|+...+|+ ||+.|++.+|.+..+-|.|.+.|+||||||+ ++|+.. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 4555566776 5899999999988899999999999999998 776431 124778889999999
Q ss_pred HHHhhhcc
Q 003276 222 RIVEGETK 229 (834)
Q Consensus 222 ~LV~gvTk 229 (834)
.+|..-..
T Consensus 93 ~lV~~Hv~ 100 (179)
T TIGR03276 93 EPIRLHVQ 100 (179)
T ss_pred HHHHHHHH
Confidence 99998654
No 19
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.83 E-value=2.3e-05 Score=94.34 Aligned_cols=63 Identities=32% Similarity=0.468 Sum_probs=59.6
Q ss_pred eeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCC
Q 003276 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 627 (834)
Q Consensus 565 V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~ 627 (834)
+.|..|+|.++++|.|+|++|+|+.++++.++.+++|+|||++++|++++.+++.||++|...
T Consensus 2 ~~i~~~~g~~~~~~~gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~ 64 (638)
T PRK00413 2 IKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKD 64 (638)
T ss_pred cEEEeCCCCEEEeCCCCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccc
Confidence 567789999999999999999999999999999999999999999999999999999999754
No 20
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.68 E-value=6.2e-05 Score=66.13 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=33.6
Q ss_pred CceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 793 GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 793 ~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
+.|+++|.|.+.||+|+|++|+++|++.++||.++++.+
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~ 41 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINART 41 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEE
Confidence 468999999999999999999999999999999999876
No 21
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.40 E-value=0.00012 Score=80.01 Aligned_cols=61 Identities=36% Similarity=0.499 Sum_probs=53.1
Q ss_pred ceeeec-CCC------cEEeCCCCCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003276 564 RVFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 564 ~V~Vft-P~G------~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv-------Ng~~v~l~~~L~~gd~VeIit 624 (834)
-|-||| |.| +.+-|.+|+|+.|+|-.||.++-..+.-|+| +|+.|.++|+|+++|+|+|+.
T Consensus 290 liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 290 LIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred eEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEee
Confidence 566887 334 6788999999999999999999999887777 778999999999999999974
No 22
>PTZ00258 GTP-binding protein; Provisional
Probab=97.25 E-value=0.00035 Score=79.36 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=54.4
Q ss_pred ceeeec--CC-CcEEeCCCCCcHhHHHhhcccccccceEEEEE----------------C-C--EecCCCccCCCCCeEE
Q 003276 564 RVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------------N-G--NLVSPTHVLANAEVVE 621 (834)
Q Consensus 564 ~V~Vft--P~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv----------------N-g--~~v~l~~~L~~gd~Ve 621 (834)
-|.+|| |+ -+.+.+|+|+|+.|+|+.||||++...+.|.| . | +.+.-+|.|++||+|+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 566776 33 38999999999999999999999999999999 3 6 7899999999999999
Q ss_pred EEec
Q 003276 622 IITY 625 (834)
Q Consensus 622 Iit~ 625 (834)
+...
T Consensus 384 f~fn 387 (390)
T PTZ00258 384 FKFN 387 (390)
T ss_pred EEec
Confidence 9764
No 23
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.17 E-value=0.0012 Score=56.20 Aligned_cols=54 Identities=31% Similarity=0.473 Sum_probs=45.8
Q ss_pred CCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003276 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (834)
Q Consensus 570 P~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~----l~~~L~~gd~VeIit~ 625 (834)
=+|+.+++|+|.|..|+.-...- -...+++.+||..+| .+++|++||.|||++.
T Consensus 5 vNG~~~~~~~~~tl~~lL~~l~~--~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 5 LNGEPRELPDGESVAALLAREGL--AGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred ECCeEEEcCCCCCHHHHHHhcCC--CCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 36899999999999999866543 345667889999999 8999999999999985
No 24
>PRK06437 hypothetical protein; Provisional
Probab=97.02 E-value=0.0023 Score=55.15 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=49.2
Q ss_pred ceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
.|.|-.++-+.+++|.|.|+.|+.-.+.-. ..-+++.+||+.++.++.|++||.|||++.
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEec
Confidence 455655555889999999999999877654 244577799999999999999999999974
No 25
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=96.96 E-value=0.0019 Score=54.94 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=45.2
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~----~~L~~gd~VeIit~ 625 (834)
+|+.+++|.+.|+.|+.-.+.-. ...+++.|||+.++.+ ++|++||.|+|++.
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l~~~--~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEEGATLAELLEELGLD--PRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHcCCC--CCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 58999999999999997666432 3456788999999999 89999999999984
No 26
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.94 E-value=0.0014 Score=57.01 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=32.5
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
+|+|++.||+|+|++|+++|++.++||.++++.++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 58999999999999999999999999999998663
No 27
>PRK07440 hypothetical protein; Provisional
Probab=96.77 E-value=0.004 Score=54.12 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=46.1
Q ss_pred CCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003276 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (834)
Q Consensus 570 P~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~----l~~~L~~gd~VeIit~ 625 (834)
=+|+.+++|.|.|..|+--.+.- -...+++.+||+.+| -++.|++||.|||++.
T Consensus 9 vNG~~~~~~~~~tl~~lL~~l~~--~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 9 VNGETRTCSSGTSLPDLLQQLGF--NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ECCEEEEcCCCCCHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 36899999999999998765533 346789999999999 8889999999999985
No 28
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.72 E-value=0.0044 Score=52.51 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=43.0
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l----~~~L~~gd~VeIit~ 625 (834)
+|+.+++|.|+|+.|+.-.+... .-++.-+||+.++. ++.|++||.|||++.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 68999999999999987655433 33678899999986 568999999999984
No 29
>PRK01777 hypothetical protein; Validated
Probab=96.66 E-value=0.0032 Score=57.99 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=41.6
Q ss_pred cEEeCCCCCcHhHHHhhccc-----ccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 573 EIKNLPKGATVVDYAYMIHT-----EIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~-----~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
.-+++|.|+|+.|..-+..- ++.-.....-|||+.+.++++|++||.|||...
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrP 76 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRP 76 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecC
Confidence 46789999999999876642 332222356689999999999999999999764
No 30
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=96.66 E-value=0.0031 Score=76.32 Aligned_cols=65 Identities=32% Similarity=0.388 Sum_probs=60.4
Q ss_pred CCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 003276 562 GSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 562 ~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
++.+.|..|+|..+++|.|.|+.|+|..+........++|+|||++++|++++..+..|++++..
T Consensus 3 ~~mi~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~ 67 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITID 67 (639)
T ss_pred CCCeEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCC
Confidence 34578899999999999999999999999998889999999999999999999999999999975
No 31
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.64 E-value=0.0027 Score=52.71 Aligned_cols=35 Identities=43% Similarity=0.512 Sum_probs=31.4
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
.|.|.+.||+|+|++|+++|++.++||..+...++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~ 36 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSD 36 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEec
Confidence 47889999999999999999999999999887543
No 32
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.58 E-value=0.0054 Score=52.78 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=45.2
Q ss_pred CCcEEeCCCC-CcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~g-aT~lDfAy~ih~~~g~~~~~akvNg~~v~l~----~~L~~gd~VeIit~ 625 (834)
+|+.+++|.+ +|..|+.-.+.-+ ...+++.+||+.+|-+ +.|++||.|||++.
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~~~--~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLELD--NKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcCCC--CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 6889999999 7999997665433 4577899999999999 78999999999985
No 33
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.58 E-value=0.007 Score=51.39 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=44.3
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~----~~L~~gd~VeIit~ 625 (834)
+|+.+++|.|.|+.|+.-.+.-. ...++..+||+.++-+ +.|++||.|||++.
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 68999999999999998776544 3667889999999743 57999999999984
No 34
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.0036 Score=53.69 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.8
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|+|.+.||+|+|++|+++|++.|+||.+++.++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~ 34 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVE 34 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEE
Confidence 789999999999999999999999999988754
No 35
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.43 E-value=0.0099 Score=50.87 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=44.1
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~----l~~~L~~gd~VeIit~ 625 (834)
+|+.+++|.+.|..|+--.+..+ ...+++-|||+.|| -.+.|++||.|||++.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~--~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 6 NDQPMQCAAGQTVHELLEQLNQL--QPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCeEEEcCCCCCHHHHHHHcCCC--CCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 68999999999999987655332 35688899999999 5557999999999985
No 36
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.39 E-value=0.0091 Score=51.77 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=43.0
Q ss_pred EEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 574 IKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
.+++|.|.|+.|+.-.+.-. ...+.+.+||+.++.++.|++||.|+|++.
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~--~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFN--TESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 77889999999998777432 366888999999999999999999999974
No 37
>PLN02908 threonyl-tRNA synthetase
Probab=96.32 E-value=0.0064 Score=74.25 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCcEEeCCC-CCcHhHHHhhcccccccceEEEEE
Q 003276 525 NIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKV 603 (834)
Q Consensus 525 ~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~-gaT~lDfAy~ih~~~g~~~~~akv 603 (834)
-...|+.-+.++.+-|.+. +... -.+.|.|..|+|.+++.|+ |+||.|+|..|...+...+++|+|
T Consensus 25 ~~~~r~~~f~~~~~~~~~~---------~~~~----~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~V 91 (686)
T PLN02908 25 VIKKRIELFEKIQARQLAR---------LESA----GGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQV 91 (686)
T ss_pred hHHHHHHHHHHHHHHHHHH---------hhhc----cCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEE
Confidence 3456666666664444332 1111 2346888899999999995 599999999999999999999999
Q ss_pred CCEecCCCccCCCCCeEEEEecCC
Q 003276 604 NGNLVSPTHVLANAEVVEIITYNA 627 (834)
Q Consensus 604 Ng~~v~l~~~L~~gd~VeIit~~~ 627 (834)
||++++|+++|+.+..|++++...
T Consensus 92 ng~l~dL~~~l~~d~~le~l~~~~ 115 (686)
T PLN02908 92 DGVLWDMTRPLEGDCKLKLFKFDD 115 (686)
T ss_pred CCEEeecCccccCCCeeEEecccc
Confidence 999999999999999999999753
No 38
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.31 E-value=0.011 Score=51.26 Aligned_cols=52 Identities=25% Similarity=0.428 Sum_probs=45.1
Q ss_pred CcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003276 572 GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (834)
Q Consensus 572 G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~----l~~~L~~gd~VeIit~ 625 (834)
|+..+++.+.|..|+--.+.. -..-+++.+||..|| .++.|++||.|||++.
T Consensus 9 g~~~e~~~~~tv~dLL~~l~~--~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 9 GKEVEIAEGTTVADLLAQLGL--NPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred CEEEEcCCCCcHHHHHHHhCC--CCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 899999999999999655433 336789999999999 9999999999999984
No 39
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.89 E-value=0.012 Score=51.62 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=32.1
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
-|+|.+.||+|+|.+|+++|++.|++|.+..+.|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~ 37 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSD 37 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeec
Confidence 47899999999999999999999999999888764
No 40
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.87 E-value=0.022 Score=48.40 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=41.9
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l----~~~L~~gd~VeIit~ 625 (834)
+|+.+++ .+.|+.|+--.+.- ....+++-+||+.+|. +++|++||.|||++.
T Consensus 6 Ng~~~~~-~~~tl~~Ll~~l~~--~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQT-EATTLALLLAELDY--EGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEc-CcCcHHHHHHHcCC--CCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 5788999 45799998655533 3356789999999998 779999999999984
No 41
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.62 E-value=0.015 Score=65.64 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=48.3
Q ss_pred ceeeecCC---CcEEeCCCCCcHhHHHhhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEE
Q 003276 564 RVFVFTPR---GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVE 621 (834)
Q Consensus 564 ~V~VftP~---G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv-----------------Ng~--~v~l~~~L~~gd~Ve 621 (834)
-|.+||-. =+.+.+|+|+|+.|+|+.||||+++..+.|.| .|+ +..-+|.+++||+|.
T Consensus 280 li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~ 359 (364)
T PRK09601 280 LITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMH 359 (364)
T ss_pred CEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEE
Confidence 45556522 26899999999999999999999999998874 132 335688999999999
Q ss_pred EEe
Q 003276 622 IIT 624 (834)
Q Consensus 622 Iit 624 (834)
|-.
T Consensus 360 f~f 362 (364)
T PRK09601 360 FRF 362 (364)
T ss_pred EEc
Confidence 864
No 42
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.62 E-value=0.017 Score=50.53 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=31.3
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.|.+.|++|++++||+.|++.|+||.+++..+.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~ 35 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETY 35 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeee
Confidence 6789999999999999999999999999988654
No 43
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.50 E-value=0.02 Score=50.63 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=30.4
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
|+|.+.||+|||.+|+.++++.|++|.+..+.
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 78999999999999999999999999988877
No 44
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.47 E-value=0.02 Score=50.63 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=31.5
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
-|.|.+.||+|||.+|+.+|++.+.+|.+..+.|.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ 37 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTD 37 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeec
Confidence 37899999999999999999999999988877663
No 45
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.45 E-value=0.025 Score=47.87 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=31.8
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
.|.|.+.||+|+|++|+++|++.++||.++.+.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~ 36 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL 36 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec
Confidence 47889999999999999999999999999888654
No 46
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.43 E-value=0.02 Score=49.60 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=30.3
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.+.||+|++++||+.|++.|+||..+...+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 678999999999999999999999999887764
No 47
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.43 E-value=0.027 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=31.3
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.|.|.+.||+|+|++|+.+|++.+.||.+..+.|
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T 36 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFT 36 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE
Confidence 5889999999999999999999999999988754
No 48
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.37 E-value=0.027 Score=49.94 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCcEEeCCCCCcHhHHHhhc---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 571 RGEIKNLPKGATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~i---h~~~g~--~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
++..+++|.|+|+-|+.-.+ |+.+.. ..+..-|||+.++.+++|++||.|+|+.
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 34688899999998886555 555443 3456789999999999999999999987
No 49
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.35 E-value=0.032 Score=48.34 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=31.4
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
+|.|.+.||+|+|++|+.+|++.++||.++.+.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~ 37 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ 37 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC
Confidence 67889999999999999999999999988876543
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.018 Score=50.18 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=28.6
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
|.|.+.||+|++++||++|++.++||.+++.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~ 32 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQ 32 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEeccc
Confidence 5789999999999999999999999988854
No 51
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.027 Score=48.34 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=30.8
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.|.|++.||+|+|++|+++|++.++||..++..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~ 34 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQN 34 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeC
Confidence 588999999999999999999999999998764
No 52
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.03 Score=49.22 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=31.3
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
-|+|.+.||+|+|++|+.+|++.|.||.+..+.|
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 3789999999999999999999999999988864
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.24 E-value=0.025 Score=47.27 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.5
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|++.|++|+|++|+++|++.++||.++....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~ 33 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDR 33 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEe
Confidence 467889999999999999999999999888653
No 54
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=95.02 E-value=0.045 Score=46.31 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=29.8
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+|.|...|++|.|++|+++|++.|+||.++.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~ 34 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSI 34 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEE
Confidence 58899999999999999999999999988875
No 55
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.94 E-value=0.041 Score=48.00 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=30.2
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.+.||+|+|++|+.+|+..+.||.+..+.|
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t 35 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWT 35 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE
Confidence 788999999999999999999999998877654
No 56
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=94.92 E-value=0.057 Score=48.73 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=45.0
Q ss_pred CCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCc----cCCCCCeEEEEec
Q 003276 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTH----VLANAEVVEIITY 625 (834)
Q Consensus 570 P~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~----~L~~gd~VeIit~ 625 (834)
=+|+.++++.+.|..|+--.+ ++-...+++-+||..||-+. .|++||.|||++.
T Consensus 23 VNG~~~~~~~~~tl~~LL~~l--~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 23 INDQSIQVDISSSLAQIIAQL--SLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred ECCeEEEcCCCCcHHHHHHHc--CCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 478999999999999987655 34456778899999999754 5999999999985
No 57
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=94.91 E-value=0.048 Score=45.68 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=31.5
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
.|.|.+.|++|+|++|+.+|++.++||.++.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~ 36 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT 36 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec
Confidence 47889999999999999999999999998887653
No 58
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=94.80 E-value=0.02 Score=51.55 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=32.5
Q ss_pred cCCC---cEEeCCCCCcHhHHHh-----hcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 569 TPRG---EIKNLPKGATVVDYAY-----MIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 569 tP~G---~i~~lp~gaT~lDfAy-----~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
+|+. .-++||.|+|+.|.-- ..++++.-.....=|=|+.++++++|++||.|||.-.
T Consensus 9 ~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 9 LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE-S
T ss_pred CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEecc
Confidence 4554 2578999999999743 3466664444444566999999999999999999754
No 59
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=94.71 E-value=0.046 Score=45.25 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.2
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.+.|++|+|++|+++|++.++||.++....
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence 678999999999999999999999999888754
No 60
>PRK00194 hypothetical protein; Validated
Probab=94.65 E-value=0.028 Score=50.46 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=30.4
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.|.|.+.||+|++++|+++|++.|+||..++..+
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~ 38 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTI 38 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence 5788999999999999999999999998876543
No 61
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.64 E-value=0.07 Score=45.57 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=43.7
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCc---cCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTH---VLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~---~L~~gd~VeIit~ 625 (834)
+|+.+++|.+.|..|+.-.+.- -...++.-+||..+|-.. .|++||.|||++.
T Consensus 6 NG~~~~~~~~~tl~~ll~~l~~--~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEVDEQTTVAALLDSLGF--PEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CCEEEEcCCCCcHHHHHHHcCC--CCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 6899999999999999766543 345788999999777543 5999999999985
No 62
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.64 E-value=0.055 Score=45.90 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.1
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|+|.+.|++|+|++|+++|++.++||.+++..+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~ 35 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKE 35 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcc
Confidence 688999999999999999999999999987643
No 63
>PRK07334 threonine dehydratase; Provisional
Probab=94.61 E-value=0.045 Score=62.75 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=36.8
Q ss_pred CceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 793 GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 793 ~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
.+|.++|+|++.||+|+|++|+++|++.++||.+++++++
T Consensus 323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4578899999999999999999999999999999998754
No 64
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=94.58 E-value=0.044 Score=48.14 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=28.7
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
|.+.|-||+|+++.||+.|++.|+||..++.
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q 34 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRM 34 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEcee
Confidence 6789999999999999999999999987765
No 65
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.30 E-value=0.081 Score=46.21 Aligned_cols=53 Identities=30% Similarity=0.283 Sum_probs=42.6
Q ss_pred cEEeCCCCCcHhHHHhhcccc------cccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 573 EIKNLPKGATVVDYAYMIHTE------IGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~------~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
..+++|.|+|+.|+--.+-.+ .....+.+-|||+.++.+++|++||.|.|++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 466889999999987655332 22456788899999999999999999999873
No 66
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.30 E-value=0.065 Score=43.64 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=28.8
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
|.|...|++|.|++|+++|++.++||.++...
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~ 32 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIA 32 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEE
Confidence 46789999999999999999999999888763
No 67
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=94.27 E-value=0.035 Score=50.42 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=29.2
Q ss_pred EEEEEEEeCcccHHHHHHHHHHhCCCceeEEE
Q 003276 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 797 ~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
+-|.|.+.||+|+.|.|+.+|++.++||.+++
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldis 35 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDIS 35 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH
Confidence 34889999999999999999999999998875
No 68
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=94.23 E-value=0.065 Score=46.90 Aligned_cols=33 Identities=39% Similarity=0.409 Sum_probs=27.1
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
-|.|.+.||+|++++|+++|++.|+||..++..
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~ 36 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA 36 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE
Confidence 478899999999999999999999999888764
No 69
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.20 E-value=0.04 Score=49.40 Aligned_cols=34 Identities=38% Similarity=0.398 Sum_probs=30.2
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
-|.+.|.||+|++++||+.|++.|+||..++..+
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~ 36 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTI 36 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh
Confidence 3788999999999999999999999998877543
No 70
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.13 E-value=0.094 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=30.8
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.|.|.+.|++|+|++|++++++.++||.+++..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~ 35 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGP 35 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeee
Confidence 4788999999999999999999999999988754
No 71
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.03 E-value=0.078 Score=45.54 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.8
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|...|++|.|++|+++|++.|+||.++....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 678899999999999999999999999987643
No 72
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=93.93 E-value=0.037 Score=46.59 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=28.2
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
|.+.+.|++|+|++|+++|++.++||.+++..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~ 33 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ 33 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc
Confidence 56789999999999999999999999776554
No 73
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=93.74 E-value=0.11 Score=46.59 Aligned_cols=49 Identities=31% Similarity=0.316 Sum_probs=42.5
Q ss_pred EEeCCCCCcHhHHHhhc---ccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 003276 574 IKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~i---h~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
...++.++|+-|..-++ |+++|- ..|||+.+++++.+++||.|.|....
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~----i~vNG~~v~~~~~~~~Gd~v~V~P~~ 77 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGL----ILVNGRPVDFDYRLKDGDRVAVYPVF 77 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEE----EEECCEECCCcccCCCCCEEEEEecc
Confidence 56889999999998887 888764 56999999999999999999997653
No 74
>PRK08577 hypothetical protein; Provisional
Probab=93.62 E-value=0.12 Score=50.33 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=32.7
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
..+|.|.+.|++|+|++|+++|++.++||.++++.+
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~ 91 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEE 91 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEE
Confidence 567999999999999999999999999999887654
No 75
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.57 E-value=0.13 Score=42.83 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.0
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
.|+|.+.|++|+|++|++.|++.++||.+++..++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47889999999999999999999999998876543
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.49 E-value=0.11 Score=43.07 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=29.4
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
|.|++.|++|+|++|+++|++.++||.++...
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence 67899999999999999999999999888754
No 77
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.36 E-value=0.17 Score=56.15 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=46.2
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecC----CCccCCCCCeEEEEecCC
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITYNA 627 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~----l~~~L~~gd~VeIit~~~ 627 (834)
+|+.++++.|.|..|+.-.+.-+ ...++..|||+.++ .+++|++||.|||++.-.
T Consensus 6 NGk~~el~e~~TL~dLL~~L~i~--~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 6 NGEPRQVPAGLTIAALLAELGLA--PKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CCEEEecCCCCcHHHHHHHcCCC--CCeEEEEECCEECCHHHcCccccCCCCEEEEEEEec
Confidence 68999999999999998665443 45678889999999 777999999999999743
No 78
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.13 E-value=0.18 Score=43.84 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=30.2
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.|.|.+.||+|+++.|+.+|+..+.||.+..+-
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~ 35 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAF 35 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEE
Confidence 478899999999999999999999999888774
No 79
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.03 E-value=0.13 Score=42.47 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.2
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
|.|...|++|.|++|+++|+++|+||.++..
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~ 32 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYA 32 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEE
Confidence 5778899999999999999999999987764
No 80
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.01 E-value=0.11 Score=53.75 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=33.2
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
+..+.|.+.||+|++++||++|++.++||.++++++
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~ 130 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT 130 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee
Confidence 457899999999999999999999999999998865
No 81
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.00 E-value=0.13 Score=44.55 Aligned_cols=54 Identities=28% Similarity=0.363 Sum_probs=45.0
Q ss_pred CcEEeCCCCCcHhHHHhhcccccc----cceEEEEECCEecCC---CccCCCCCeEEEEec
Q 003276 572 GEIKNLPKGATVVDYAYMIHTEIG----NKMVAAKVNGNLVSP---THVLANAEVVEIITY 625 (834)
Q Consensus 572 G~i~~lp~gaT~lDfAy~ih~~~g----~~~~~akvNg~~v~l---~~~L~~gd~VeIit~ 625 (834)
.....+|.++|+.|+--.+..... ...+..-|||+.++. +++|++||.|.|++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 367888999999999877765554 255688899999999 999999999999974
No 82
>PRK04435 hypothetical protein; Provisional
Probab=92.88 E-value=0.23 Score=49.35 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=34.1
Q ss_pred CceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 793 GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 793 ~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.+..++|.+.+.|++|+|++|+++|++.++||..++..
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~ 103 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQS 103 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 44577899999999999999999999999999988764
No 83
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=92.76 E-value=0.11 Score=46.86 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=40.4
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv-----------------Ng~--~v~l~~~L~~gd~VeIit 624 (834)
+.+.+++|+|+.+.|-.||+|+-+..+.|.| .|+ ...-+|.+++||+|.+..
T Consensus 13 RaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~f 83 (84)
T PF06071_consen 13 RAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFRF 83 (84)
T ss_dssp EEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEEE
T ss_pred EEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEEc
Confidence 5789999999999999999999999999998 354 566788999999998854
No 84
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.63 E-value=0.19 Score=42.51 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=29.6
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+|.|.+.|++|.|++|++.+++.++||.++..
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~ 34 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEI 34 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEe
Confidence 58889999999999999999999999988865
No 85
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=92.58 E-value=0.13 Score=52.11 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=33.9
Q ss_pred eeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 795 ~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.++++.|++.||+|+++++|+.+...++||.+.+.++
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~ 127 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRT 127 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeee
Confidence 4779999999999999999999999999998887754
No 86
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=92.07 E-value=0.27 Score=44.42 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=30.3
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
.|.+...|++|+|+.||.+++.-|.||.++++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtv 35 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHV 35 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEe
Confidence 58889999999999999999999999999987
No 87
>PRK05007 PII uridylyl-transferase; Provisional
Probab=91.52 E-value=0.24 Score=62.49 Aligned_cols=47 Identities=13% Similarity=0.378 Sum_probs=41.3
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.|++..+...+-|+|.+.||+|||++|++++.+.|++|.+..+.|.
T Consensus 798 V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ 844 (884)
T PRK05007 798 VSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTI 844 (884)
T ss_pred EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEecc
Confidence 78887666556679999999999999999999999999999888764
No 88
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=91.47 E-value=0.24 Score=62.20 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=41.6
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.|++..+..++-|.|.+.||+|||++|++++++.|++|.+..+.|-
T Consensus 773 V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ 819 (854)
T PRK01759 773 VRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI 819 (854)
T ss_pred EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence 88988776666679999999999999999999999999998888763
No 89
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=91.38 E-value=0.36 Score=42.84 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.8
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.|.+.+.|++|+|+.|+.+++.-|.||.++++.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 588899999999999999999999999999874
No 90
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.65 E-value=0.51 Score=41.42 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=29.4
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.|.+...|++|.|++|.+++++.++||.++...
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~ 35 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESR 35 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE
Confidence 467778899999999999999999999988764
No 91
>PRK14707 hypothetical protein; Provisional
Probab=90.48 E-value=1.8 Score=57.70 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccceeEEEeEecChHHHHHHHHh----cCCCC-
Q 003276 321 FMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIED-DQFLDLMTVKTEIRSVCKEPYSIYKAVLK----SRGSI- 394 (834)
Q Consensus 321 f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~-~~~l~~~~i~~~V~~R~K~~ySI~~Km~r----k~~~~- 394 (834)
|+-+.|+.-....+.+...-..-|..|... |+..+.. .+. . .....|.|+..|+.+|+.. ++.++
T Consensus 2263 ~~~~~p~~~~~~a~~Ll~~A~~~Ep~ITp~---Lr~ia~~~~G~--L----~GLe~RLKS~~SLkrKL~~~~~~~~~sle 2333 (2710)
T PRK14707 2263 LRDVQPQDIALKAQTLLGRARQMEPQVTDM---LQNIAARHGGQ--L----AGTQHQLKSYSSLQEKLKQRVALKKQSLE 2333 (2710)
T ss_pred hccCCHHHHHHHHHHHHHHHHhccccccHH---HHHHHHHhcCc--c----cchHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 556667776666666666555555555543 3333332 121 1 2234689999999999953 34444
Q ss_pred ---CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-ccccccccccccccCCCCCCcceeEEEEeccCCCcc
Q 003276 395 ---NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESM 470 (834)
Q Consensus 395 ---~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~-~~~p~p~r~kDYIa~PK~NGYqSLHt~V~~~~~~~~ 470 (834)
..|+|.+-.=||+++. .|...+..+++.+.. -|+-+ +++++-. .+.++|..+++++..++ |
T Consensus 2334 eAaa~VnDALRYTVVLpp~---------~Fva~~r~Il~aL~~qGy~~v--kvkN~F~-~~~~~YkGINvtL~~pd---G 2398 (2710)
T PRK14707 2334 EAAASVNDALRYSVVLEPQ---------GFTAGLRAVLAALDDQGHARV--KLTNQFT-EYSPSFKAINLTLRSPE---G 2398 (2710)
T ss_pred HHHHHhhhheeEEEEcCch---------hHHHHHHHHHHHHHHcCCeEE--EEeeccc-CCCCCccceEEEEEcCC---C
Confidence 6889987777777664 477889999988864 46544 5666653 34689999999986433 3
Q ss_pred eeEEEEEechhHHHHHHHHHHhhccCCcc
Q 003276 471 FRLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (834)
Q Consensus 471 ~~vEIQIRT~~Mh~~AE~G~aahw~yK~~ 499 (834)
..+|||.=|..--..-+ ..|=.||+.
T Consensus 2399 ~~FEIQFHT~qSF~LK~---r~HdLYKQ~ 2424 (2710)
T PRK14707 2399 ALWEIQFHTPETFALKE---RFHDLYKRT 2424 (2710)
T ss_pred cEEEEEeccHHHHHHHH---HHHHHHHHH
Confidence 79999999987655554 367778864
No 92
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=90.21 E-value=0.33 Score=43.67 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=41.8
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEE
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEII 623 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv-----------------Ng~--~v~l~~~L~~gd~VeIi 623 (834)
+.+.+++|+|+-+.|-.||+|+-+..+.|.| .|+ .-.-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 6789999999999999999999999999988 222 22336779999998763
No 93
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.20 E-value=0.39 Score=60.39 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=40.8
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.+++.......-|.|.+.||+|+|++|++++++.|+||.+..+.|.
T Consensus 769 V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~ 815 (850)
T TIGR01693 769 VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTF 815 (850)
T ss_pred EEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEec
Confidence 77876666556669999999999999999999999999999988764
No 94
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.14 E-value=0.75 Score=40.59 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=39.6
Q ss_pred cEEeCCCC-CcHhHHHhhc---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKG-ATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~g-aT~lDfAy~i---h~~~g~--~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
..+++|.+ +|+-|+.-.+ |+++.. ..+..-|||+.++.+++|++||.|.|+.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 46778876 8888876554 443322 3456789999999999999999999986
No 95
>PRK05092 PII uridylyl-transferase; Provisional
Probab=89.77 E-value=0.46 Score=60.36 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=39.7
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.+++......+.|.|.+.||+|+|++|+.+|++.|+||.+..+.|.
T Consensus 833 V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~ 879 (931)
T PRK05092 833 VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY 879 (931)
T ss_pred EEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc
Confidence 56665554445679999999999999999999999999999888764
No 96
>PRK03381 PII uridylyl-transferase; Provisional
Probab=89.08 E-value=0.49 Score=58.90 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=39.6
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.|++..+.....|.|.+.||+|||++||.+|++.++||.+..+.|-
T Consensus 697 v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 697 VLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred EEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 56766555445679999999999999999999999999999888764
No 97
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=89.07 E-value=0.51 Score=39.88 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=27.6
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+-|...|++|.|++|+++|++.|+||.++..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~ 32 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQV 32 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEe
Confidence 3568899999999999999999999987764
No 98
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.01 E-value=0.73 Score=39.01 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=29.3
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
.|.|...|++|.|+.|++++++.++||.++..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~ 34 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLV 34 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEE
Confidence 57888999999999999999999999988864
No 99
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=88.99 E-value=0.71 Score=40.97 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=30.9
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.|.|.+.|++|+|+.|+.+++.-|.||.++++.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~ 37 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT 37 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence 588999999999999999999999999999974
No 100
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=88.84 E-value=0.76 Score=42.57 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=31.2
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
...|.|.+.|++|+|+.|+.+++.-|.||.++++
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtv 41 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILC 41 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEE
Confidence 4458999999999999999999999999999976
No 101
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=88.32 E-value=0.8 Score=36.62 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=29.1
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.+.|++|++++|++.+++.++||.++....
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRT 33 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEE
Confidence 467899999999999999999999998887643
No 102
>PRK04374 PII uridylyl-transferase; Provisional
Probab=88.31 E-value=0.63 Score=58.60 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=40.1
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.|++......+.|.|.+.||+|||++|+.+|++.++||.+..+.|-
T Consensus 786 V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 786 VEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred EEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 66776555556679999999999999999999999999999888663
No 103
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.65 Score=56.91 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=38.9
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.+........|+|++.||+|+|++|+.++++.+.+|.+..+.|
T Consensus 781 v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT 826 (867)
T COG2844 781 VTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT 826 (867)
T ss_pred eeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc
Confidence 7787655544445899999999999999999999999999888765
No 104
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=87.86 E-value=0.86 Score=34.45 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.1
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.+.|++|.+++|+++|++.+++|..+....
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 467889999999999999999999999887643
No 105
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=87.19 E-value=0.78 Score=58.05 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=37.4
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
|.|++......+.|.|.+.||+|||++|+.+|++.|+||.+..+.|-
T Consensus 804 V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~ 850 (895)
T PRK00275 804 VTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL 850 (895)
T ss_pred EEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence 33443333335579999999999999999999999999999887654
No 106
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=86.96 E-value=1.2 Score=38.52 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=28.7
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.+...|++|.|++|.+++++.|+||.++....
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp 34 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRP 34 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee
Confidence 455668999999999999999999999997653
No 107
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.83 E-value=0.93 Score=41.73 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=39.7
Q ss_pred EEeCCCCCcHhHHHhh-----cccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 574 IKNLPKGATVVDYAYM-----IHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~-----ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
-+.|+.|+|+.|..-+ +.++++-+.-..-|=|+.+.++.+|++||.|||.-.
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIyRP 76 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIYRP 76 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEecc
Confidence 5789999999998644 456665543333345789999999999999999763
No 108
>PRK03059 PII uridylyl-transferase; Provisional
Probab=86.24 E-value=0.92 Score=57.13 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=38.5
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.+++......+.|.|.+.||+|||++|+.+|+..++||.+..+.|
T Consensus 776 V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred EEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 5665544444567999999999999999999999999999988765
No 109
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=83.49 E-value=2.1 Score=38.33 Aligned_cols=51 Identities=27% Similarity=0.189 Sum_probs=38.0
Q ss_pred cEEeCCCCCcHhHHHhhc---cccccc----------ceEEEEECCEecCCCc--cCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTH--VLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~i---h~~~g~----------~~~~akvNg~~v~l~~--~L~~gd~VeIit 624 (834)
..+++| |+|+.|+--.+ |+++.. ..+..-|||+.++.+. +|++||.|.|+.
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 355677 89999986655 443221 2367789999998887 999999999986
No 110
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=81.38 E-value=5.5 Score=44.94 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHH----HcCCCHHH-HHHHhhccccccCCC------CCHHHHHh-hhChHHHHHHhhhc
Q 003276 171 FIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTNV------VTFERIEE-EFGATVRRIVEGET 228 (834)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~~D~~t-I~AaLLHDvvEDt~~------~T~e~I~~-~FG~~Va~LV~gvT 228 (834)
.+.|.++|+.+.. .++.|.+. ++||||||+-..... ...+-|++ .|.++++.+|+...
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4689999987743 45777765 568999999543210 11233333 25667888886533
No 111
>PRK03381 PII uridylyl-transferase; Provisional
Probab=80.21 E-value=2.5 Score=52.83 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=37.5
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.|.... ...+.|.|.+.||+|++++||.+|+..|.||.+..+-|
T Consensus 590 v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t 634 (774)
T PRK03381 590 VEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS 634 (774)
T ss_pred EEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe
Confidence 5665444 44557899999999999999999999999998888755
No 112
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=77.51 E-value=1.3 Score=39.87 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCcccchHHHHHHHHHHcC------CCHHHHHHHhhccccccC
Q 003276 168 GEPFIIHPVEVARILGELE------LDWESIAAGLLHDTVEDT 204 (834)
Q Consensus 168 GePYi~Hpl~VA~ILa~l~------~D~~tI~AaLLHDvvEDt 204 (834)
+++.+.|.+.|+.+...+. .......||||||+-...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 5677899999999886543 234578999999997643
No 113
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=76.94 E-value=3.6 Score=35.00 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=26.3
Q ss_pred EEEEEEe----CcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCI----DRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~----DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
-|.|.+. |.+|+++.|++.|+++|+||..+++
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS 43 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISS 43 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEE
Confidence 4566555 7999999999999999999988874
No 114
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=75.75 E-value=1.2 Score=39.88 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=26.9
Q ss_pred EEEEEeC-cccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCID-RRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~D-R~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+.|.+.| +.|+++.||++|++.|+||..++.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4678889 999999999999999999966543
No 115
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.72 E-value=3.6 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=26.8
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
+.|+.-||+|-|+.++++|++ +.||..++-+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 467888999999999999999 9999877643
No 116
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=74.06 E-value=0.94 Score=51.32 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=36.8
Q ss_pred cEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEE
Q 003276 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeI 622 (834)
+....+.|||++||+|.||++--..++.|. .-+...-+|.+++||++.+
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~~~~Akeag-~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGGEAAAKEAG-KRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred chhhccccceEeeHHHHHhcCcHHHHHHhc-ceeeccccceecCCCEEEE
Confidence 577788999999999999998333343333 2233788999999999944
No 117
>PRK06545 prephenate dehydrogenase; Validated
Probab=73.67 E-value=3.4 Score=46.73 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=31.0
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+.+|.|..-||+|.|+.|++.+++.++||.++.+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i 323 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRI 323 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeeccee
Confidence 4468888899999999999999999999999887
No 118
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=73.37 E-value=4.7 Score=50.94 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=37.3
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.+++......+.|.|.+.||+|||++|+.+|+..+.||.+..+.|
T Consensus 667 V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T 712 (854)
T PRK01759 667 VKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT 712 (854)
T ss_pred EEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE
Confidence 3355444444567899999999999999999999999999888654
No 119
>PRK09169 hypothetical protein; Validated
Probab=73.31 E-value=32 Score=47.17 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=75.6
Q ss_pred EEEeEecChHHHHHHHH----hcCCCC----CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-cccccccc
Q 003276 372 EIRSVCKEPYSIYKAVL----KSRGSI----NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRA 442 (834)
Q Consensus 372 ~V~~R~K~~ySI~~Km~----rk~~~~----~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~-~~~p~p~r 442 (834)
....|+|+..|+.+|+. +++.++ ..|+|.+=.=|++++. .+...+..+++.+.. -|+-+ +
T Consensus 1915 Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~---------~Fva~~r~iv~~L~~~G~~~V--k 1983 (2316)
T PRK09169 1915 GLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQ---------TFVAGYRRILGALDEQGHTRT--R 1983 (2316)
T ss_pred chHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCc---------cHHHHHHHHHHHHHhCCCeEE--E
Confidence 34569999999999986 445554 5788876555555443 477889999988864 46544 4
Q ss_pred ccccccCCCCCCcceeEEEE-eccCCCcceeEEEEEechhHHHHHHHHHHhhccCCc
Q 003276 443 MKDYIATPKPNGYQSLHTTL-IPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (834)
Q Consensus 443 ~kDYIa~PK~NGYqSLHt~V-~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~ 498 (834)
++++-.. ..++|..+|+++ .. ..+..+|||-=|..--..-+. .|-.||.
T Consensus 1984 v~N~F~~-~~~~YkGVNv~l~~s---~~g~~fEIQFHT~qSF~lK~r---~H~lYkq 2033 (2316)
T PRK09169 1984 VTNHFKK-RGPAFKGINVTLDAT---GEGVRLEIQFHTPQTFDLKER---FHDLYKQ 2033 (2316)
T ss_pred EEeeecc-CCCCccceEEeeecC---CCCceEEEEecCHHHHHHHHH---hHHHHHH
Confidence 5553322 259999999988 33 235799999999876555443 5777886
No 120
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=73.28 E-value=5.8 Score=34.52 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=29.2
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.+...|++|-|.+|-+++++.|+|+..+...+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP 35 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRP 35 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCC
Confidence 566778999999999999999999999997653
No 121
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=72.21 E-value=9.5 Score=33.81 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCCcHhHHHhhc---ccc----cccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 579 KGATVVDYAYMI---HTE----IGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 579 ~gaT~lDfAy~i---h~~----~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
.|+|+.|+--.+ |+. +...-+..-||++.+.++++|++||.|.|+.
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 367777764333 222 1112234678999999999999999999986
No 122
>PRK05007 PII uridylyl-transferase; Provisional
Probab=71.50 E-value=5.4 Score=50.59 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=36.2
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
|.+++......+.|.|.+.||+|+|++|+.+|+..+.||.+..+.
T Consensus 691 V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~ 735 (884)
T PRK05007 691 VLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIF 735 (884)
T ss_pred EEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEE
Confidence 335444444456789999999999999999999999999888764
No 123
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=71.39 E-value=6.8 Score=38.39 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=30.8
Q ss_pred ceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEE
Q 003276 794 HSIQWFSVVCIDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 794 ~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
....+|.+...||.|+|++|-++||+.++||..++
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~ 104 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIH 104 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEe
Confidence 34567888999999999999999999999997765
No 124
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=71.20 E-value=5.2 Score=42.01 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=28.7
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
|-+.-.|++|+++.|+++|++.++||..++..
T Consensus 151 L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~ 182 (208)
T TIGR00719 151 ILLEHNDKFGTIAGVANLLAGFEINIEHLETA 182 (208)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCccEEEEEEE
Confidence 56678999999999999999999999888763
No 125
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=71.16 E-value=3.6 Score=46.95 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=46.6
Q ss_pred eeeec--CC-CcEEeCCCCCcHhHHHhhcccccccceEEEEEC-----------------CE--ecCCCccCCCCCeEEE
Q 003276 565 VFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVVEI 622 (834)
Q Consensus 565 V~Vft--P~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvN-----------------g~--~v~l~~~L~~gd~VeI 622 (834)
++-|| |+ =+.+++++|+|+.+.|-.||||+-+..+.|.|= |+ .---+|.+++||++.+
T Consensus 285 ~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f 364 (368)
T TIGR00092 285 SFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFF 364 (368)
T ss_pred eEEEcCCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEE
Confidence 44555 23 268999999999999999999999999999881 21 2234678999999987
Q ss_pred Ee
Q 003276 623 IT 624 (834)
Q Consensus 623 it 624 (834)
-.
T Consensus 365 ~f 366 (368)
T TIGR00092 365 AF 366 (368)
T ss_pred ec
Confidence 54
No 126
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=71.04 E-value=1.7 Score=39.53 Aligned_cols=32 Identities=34% Similarity=0.327 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHc----C--CCHH-HHHHHhhcccccc
Q 003276 172 IIHPVEVARILGEL----E--LDWE-SIAAGLLHDTVED 203 (834)
Q Consensus 172 i~Hpl~VA~ILa~l----~--~D~~-tI~AaLLHDvvED 203 (834)
+.|.+.|+.+...+ + .+.+ .++||||||+=.-
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~ 40 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKI 40 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHH
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCC
Confidence 57999999988654 3 2222 5799999998653
No 127
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=70.35 E-value=6.5 Score=44.68 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=32.6
Q ss_pred ceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 794 HSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 794 ~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
+....|.|+.-||+|.|++|+++|++.++||.++.-.
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3456789999999999999999999999999988654
No 128
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.69 E-value=1.5 Score=50.68 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=50.8
Q ss_pred cCCCcEEeCCC-CCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCC
Q 003276 569 TPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALS 629 (834)
Q Consensus 569 tP~G~i~~lp~-gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~~ 629 (834)
.|+|.+++.-. +.||.|+|-. ...+++.++.++|||.+.+|+.+|+..- +|+++-....
T Consensus 5 Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~ 64 (560)
T KOG1637|consen 5 LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDE 64 (560)
T ss_pred cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcc
Confidence 89998777655 7899999999 8889999999999999999999997555 9999876543
No 129
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=68.43 E-value=6.1 Score=33.60 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=24.1
Q ss_pred CcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 805 DRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 805 DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|++|+|..|+.+++.-|.||.++++..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 789999999999999999999999854
No 130
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=67.38 E-value=5.2 Score=42.51 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=29.4
Q ss_pred CCCcccchHHHHHHHHH----HcCCCHHH-HHHHhhcccccc
Q 003276 167 SGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVED 203 (834)
Q Consensus 167 sGePYi~Hpl~VA~ILa----~l~~D~~t-I~AaLLHDvvED 203 (834)
+|..-+.|.++||.+-. +.|.|.+. ..||||||+.--
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~ 74 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKA 74 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccc
Confidence 56667999999998753 46888876 679999998753
No 131
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=67.00 E-value=8.2 Score=48.76 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=32.6
Q ss_pred eeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 795 ~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
..+.|.|.+.||+|+|++|+.+|+..+.||.+..+.
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~ 702 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVN 702 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEE
Confidence 355689999999999999999999999999888875
No 132
>PRK08818 prephenate dehydrogenase; Provisional
Probab=66.71 E-value=6.6 Score=44.92 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=29.6
Q ss_pred eEEEEEEEe-CcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCI-DRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~-DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+..|.+..- |++|.|++|+++++..++||.++..
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies 329 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS 329 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE
Confidence 345677774 9999999999999999999999987
No 133
>PRK06382 threonine dehydratase; Provisional
Probab=65.84 E-value=7.9 Score=44.64 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=31.0
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
...|.|...|++|.|++|+++|++.++||.++..
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~ 363 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEV 363 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 4578889999999999999999999999988875
No 134
>PRK14707 hypothetical protein; Provisional
Probab=64.31 E-value=31 Score=46.94 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=72.9
Q ss_pred cChHHHHHHHHhc---CCC----CCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-cccccccccccccccC
Q 003276 378 KEPYSIYKAVLKS---RGS----INEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRAMKDYIAT 449 (834)
Q Consensus 378 K~~ySI~~Km~rk---~~~----~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih-~~~~p~p~r~kDYIa~ 449 (834)
|++.||.+|+.+. +++ +..|.|.+-.=||++. ..|....+.+...+. +-|+.+ ++|++-..
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~---------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~ 2612 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS---------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTS 2612 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc---------chHHHHHHHHHHHHHhcCCeEE--EeeccccC
Confidence 9999999999754 233 4678897666666554 347788888888886 457665 78888755
Q ss_pred CCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCc
Q 003276 450 PKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (834)
Q Consensus 450 PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~ 498 (834)
| .+.|..+-+++.... +..||||.=|..--..-+. .|=.|+.
T Consensus 2613 ~-d~tY~GvN~~~r~~~---g~~FEIQFHT~~Sf~~K~~---tH~lYek 2654 (2710)
T PRK14707 2613 G-DGTYRGINASFTDAE---GYAFEVQFHTAESFNAKAQ---THLSYKR 2654 (2710)
T ss_pred C-CCcccceeeeEEcCC---CCeEEEEeccHHHHHHHHH---hHHHHHh
Confidence 4 478999999886422 3589999999875443333 5556654
No 135
>PRK05092 PII uridylyl-transferase; Provisional
Probab=63.96 E-value=9.8 Score=48.62 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=36.1
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.+........+.|.|.+.||+|+|++|+.+|+..|.||.+..+.|
T Consensus 722 v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t 767 (931)
T PRK05092 722 TEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT 767 (931)
T ss_pred EEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE
Confidence 3344333333556899999999999999999999999998887643
No 136
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.86 E-value=13 Score=32.62 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=28.9
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
|.+...|++|-|++|-++++..|+|+..+..++
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP 35 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK 35 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc
Confidence 455668999999999999999999999998754
No 137
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.42 E-value=14 Score=33.74 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=30.7
Q ss_pred EEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 797 ~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
..|.+...|++|.|.+|-+++++.|+||..+..+.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP 49 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP 49 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc
Confidence 45777779999999999999999999999997653
No 138
>PRK08198 threonine dehydratase; Provisional
Probab=61.25 E-value=13 Score=42.76 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=32.6
Q ss_pred eeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 795 ~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
....|.|+.-|++|.|+++.++|++.|+||..++.+
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 456789999999999999999999999999988764
No 139
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=61.01 E-value=10 Score=31.57 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred EEEECCEec-CCCccCCCCCeEEE
Q 003276 600 AAKVNGNLV-SPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v-~l~~~L~~gd~VeI 622 (834)
..+|||+.+ ..++.|+.||+|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 578999998 67899999999986
No 140
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=60.57 E-value=4.9 Score=36.70 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=25.5
Q ss_pred cccchHHHHHHHHHHcCC--------CHHHHHHHhhccccccC
Q 003276 170 PFIIHPVEVARILGELEL--------DWESIAAGLLHDTVEDT 204 (834)
Q Consensus 170 PYi~Hpl~VA~ILa~l~~--------D~~tI~AaLLHDvvEDt 204 (834)
+.+.|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 456899999988765421 23568999999998743
No 141
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=59.21 E-value=8.3 Score=44.63 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=28.9
Q ss_pred EEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 797 ~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
-+|-|.-.|++|+++.|+++|++.++||.++..
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~ 371 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYL 371 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHhee
Confidence 367888899999999999999999999966544
No 142
>PRK04374 PII uridylyl-transferase; Provisional
Probab=58.51 E-value=14 Score=46.84 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=36.3
Q ss_pred cccCCCCCceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
+.|........+.|.|.+.||+|+++.||.+|+..+.||.+..+-|
T Consensus 680 ~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t 725 (869)
T PRK04374 680 KARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLD 725 (869)
T ss_pred EEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEE
Confidence 3454333334557899999999999999999999999998887743
No 143
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=57.65 E-value=16 Score=37.12 Aligned_cols=46 Identities=33% Similarity=0.460 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCcccCCCcc--cchHHHHHHHHHHcCCCHHHHHHHhhccc
Q 003276 152 ALMLAFEAHDGQKRRSGEPF--IIHPVEVARILGELELDWESIAAGLLHDT 200 (834)
Q Consensus 152 A~~~A~~aH~gQ~RksGePY--i~Hpl~VA~ILa~l~~D~~tI~AaLLHDv 200 (834)
+..|. .|..+- .+|||. ..|.+.-|...-.-|.|.+.|+||||||+
T Consensus 13 ~~~F~--~~g~e~-y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 13 AYLFL--RHGDEG-YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred HHHHH--Hccccc-cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 44454 344443 378886 47999999766667999999999999986
No 144
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=57.51 E-value=4.3 Score=44.13 Aligned_cols=59 Identities=32% Similarity=0.478 Sum_probs=45.3
Q ss_pred eeec-CCCc------EEeCCC-CCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003276 566 FVFT-PRGE------IKNLPK-GATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 566 ~Vft-P~G~------i~~lp~-gaT~lDfAy~ih~~~g~~~~~akv-------Ng~~v~l~~~L~~gd~VeIit 624 (834)
-+|| |+|. ..-|+. -.|+-||--.||..+-....-|.| |.+.|.+++.|.+.|+|.|+.
T Consensus 284 riYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivk 357 (358)
T KOG1487|consen 284 RIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVK 357 (358)
T ss_pred EEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhcc
Confidence 3565 6663 444555 459999999999998777655544 788899999999999999974
No 145
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=56.37 E-value=11 Score=40.97 Aligned_cols=53 Identities=32% Similarity=0.392 Sum_probs=46.2
Q ss_pred CcEEeCCCCCcHhHHHhhcccccccceEEEEECC-------EecCCCccCCCCCeEEEEe
Q 003276 572 GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-------NLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 572 G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg-------~~v~l~~~L~~gd~VeIit 624 (834)
++.+-|.+|+|+-|+--+||..+...+.-|.|=| +.|.|.+.+.+.|+|.|+.
T Consensus 304 dd~~vlr~g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~ 363 (364)
T KOG1486|consen 304 DDPLVLRKGSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVK 363 (364)
T ss_pred CCceEEeCCCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeec
Confidence 3778888999999999999999998888777755 5788999999999999974
No 146
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.70 E-value=19 Score=34.42 Aligned_cols=46 Identities=4% Similarity=-0.127 Sum_probs=35.6
Q ss_pred cccCCCCCc--eeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 786 ATWHNLEGH--SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 786 v~W~~~~~~--~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
+.|...... ..+.|.+...|++|.|++|-++++..|+|+..+...+
T Consensus 29 ~~~~~~~~~~~~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP 76 (115)
T cd04930 29 VFEEKEGKAVPQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP 76 (115)
T ss_pred cccccccccccccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc
Confidence 446544332 1356777889999999999999999999999998654
No 147
>smart00363 S4 S4 RNA-binding domain.
Probab=54.78 E-value=12 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEECCEec-CCCccCCCCCeEEEEe
Q 003276 600 AAKVNGNLV-SPTHVLANAEVVEIIT 624 (834)
Q Consensus 600 ~akvNg~~v-~l~~~L~~gd~VeIit 624 (834)
+.+|||+.+ ..+++|..||.|++--
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEcc
Confidence 578999999 8899999999998743
No 148
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=54.74 E-value=14 Score=33.15 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=26.3
Q ss_pred cceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 596 NKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 596 ~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
..++.+.+|...++++++|++||.|-|+.
T Consensus 51 ~~~v~~~~~~~~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 51 NIVVNAANNEFLVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred cceEEeeeceeeccccccCCCCCEEEEeC
Confidence 35788889999999999999999999986
No 149
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=53.86 E-value=19 Score=38.46 Aligned_cols=50 Identities=24% Similarity=0.088 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHH--------cCCCHHH-HHHHhhcccc
Q 003276 145 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE--------LELDWES-IAAGLLHDTV 201 (834)
Q Consensus 145 ~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~--------l~~D~~t-I~AaLLHDvv 201 (834)
|..++++|.+|+.+.... .-+.|.++|...-.. ++.|.+. .+||||||+.
T Consensus 37 dt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG 95 (228)
T TIGR03401 37 DTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG 95 (228)
T ss_pred ChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc
Confidence 677788999999776442 336899998754321 3677765 6899999986
No 150
>PRK03059 PII uridylyl-transferase; Provisional
Probab=53.82 E-value=19 Score=45.71 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred eeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 795 ~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
..+.|.|.+.||+|++++||.+|+..+.||.+..+
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i 711 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARV 711 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEE
Confidence 35578999999999999999999999999988876
No 151
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=52.60 E-value=26 Score=32.31 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=33.2
Q ss_pred CCCcHhHHHhhc---ccccc----------cceEEEEECCEec----CCCccCCCCCeEEEEec
Q 003276 579 KGATVVDYAYMI---HTEIG----------NKMVAAKVNGNLV----SPTHVLANAEVVEIITY 625 (834)
Q Consensus 579 ~gaT~lDfAy~i---h~~~g----------~~~~~akvNg~~v----~l~~~L~~gd~VeIit~ 625 (834)
.|+|+-|+--.+ |+... +..+-..|||+.+ .++++|++||.|.|+..
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIST 90 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECC
Confidence 577887764333 32211 1256889999987 47799999999999874
No 152
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=52.12 E-value=20 Score=45.78 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=31.3
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
.+.|.|.+.||+|++++|+.+|+..|.||.+..+
T Consensus 704 ~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I 737 (895)
T PRK00275 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARI 737 (895)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEE
Confidence 4578999999999999999999999999988876
No 153
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.73 E-value=17 Score=32.49 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=23.5
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
|.|+.-|++|-|++++++|+ +.||..+.
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~ 31 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFN 31 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEE
Confidence 67888999999999999999 66776543
No 154
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=51.10 E-value=10 Score=33.86 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=35.2
Q ss_pred eeecCCCcEEeCCCCCcHhHHHhhcccccccc------------------eEEEEECCEe-cCC-CccCCCCCeEEE
Q 003276 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNK------------------MVAAKVNGNL-VSP-THVLANAEVVEI 622 (834)
Q Consensus 566 ~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~------------------~~~akvNg~~-v~l-~~~L~~gd~VeI 622 (834)
.-|+=||+.++.++|.|.++++.+.+..+-.. | -+.|||+. +.- .+++++|.+|+-
T Consensus 4 v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C-~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 4 VTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLC-LVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS--EEEESSEEEEETTT-B--TTEEEE-
T ss_pred EEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceE-EEEECCCcceEcccCCCcCCcEEEE
Confidence 34566899999999999999998864442111 3 47889987 432 346899988763
No 155
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=50.45 E-value=12 Score=29.41 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.1
Q ss_pred EEEECCEecC-CCccCCCCCeE
Q 003276 600 AAKVNGNLVS-PTHVLANAEVV 620 (834)
Q Consensus 600 ~akvNg~~v~-l~~~L~~gd~V 620 (834)
..+|||+.+. .+++++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 5789999999 99999999987
No 156
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=50.36 E-value=19 Score=36.63 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHH---H-HcCCCHHH-HHHHhhcccccc-C-------CCCCHHHHHh-hhChHHHHHHhh
Q 003276 169 EPFIIHPVEVARIL---G-ELELDWES-IAAGLLHDTVED-T-------NVVTFERIEE-EFGATVRRIVEG 226 (834)
Q Consensus 169 ePYi~Hpl~VA~IL---a-~l~~D~~t-I~AaLLHDvvED-t-------~~~T~e~I~~-~FG~~Va~LV~g 226 (834)
+..+-|+++|+... + ++|-|++. -.+|||||.=-+ | +..+.+-+.+ .-.++|++.|.+
T Consensus 46 e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~ 117 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMG 117 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHH
Confidence 44567888766554 4 78999887 678999997211 1 1122333333 367777777766
No 157
>PRK10119 putative hydrolase; Provisional
Probab=47.72 E-value=39 Score=36.31 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003276 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 148 ~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa----~l~~D~~-tI~AaLLHDvvE 202 (834)
.+.++.+|..+...+. .+|-- +.|..+|...-. .-+.|.. ..+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3445556665544432 23333 467777765432 3366765 478999999974
No 158
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=47.65 E-value=19 Score=30.34 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=23.2
Q ss_pred cccchHHHHHHHHHH----cCCCHH-HHHHHhhccccc
Q 003276 170 PFIIHPVEVARILGE----LELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 170 PYi~Hpl~VA~ILa~----l~~D~~-tI~AaLLHDvvE 202 (834)
+-+.|.+.|+..... +++|.+ ...||||||+=.
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 445788888876543 467764 577999999743
No 159
>PRK00106 hypothetical protein; Provisional
Probab=44.84 E-value=19 Score=43.20 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=27.7
Q ss_pred CCCcccchHHHHHHHH----HHcCCCH-HHHHHHhhccccc
Q 003276 167 SGEPFIIHPVEVARIL----GELELDW-ESIAAGLLHDTVE 202 (834)
Q Consensus 167 sGePYi~Hpl~VA~IL----a~l~~D~-~tI~AaLLHDvvE 202 (834)
.|...+.|.++||.+. ..+|+|. ..-.||||||+=.
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK 387 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGK 387 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC
Confidence 3666789999999875 3678885 4578999999743
No 160
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=43.68 E-value=33 Score=34.85 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=29.2
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
...|..+--+-+|+||.|++.||+.|++|+.+-.+
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 44666667788999999999999999999987553
No 161
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=43.55 E-value=55 Score=36.72 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCChHHHHHhHhhhhcCCChhhHHHHHHHHH--HH---------HHhhcCCcccCCCcccchHHHHHHHHHHc-----CC
Q 003276 124 EDSPERLWEDLRPTISYLSPNELELVRRALM--LA---------FEAHDGQKRRSGEPFIIHPVEVARILGEL-----EL 187 (834)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~--~A---------~~aH~gQ~RksGePYi~Hpl~VA~ILa~l-----~~ 187 (834)
..+++++++.|...+..........+-+++- +. ...|.. .. + -.+.|-++|+.+...+ .+
T Consensus 106 ~~~~e~l~~el~~~i~~i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHa-y~-G--GLleHtl~v~~~~~~l~~~y~~~ 181 (314)
T PRK13480 106 PLSKEEMQEEITQYIFEMENPNIQRITRHLLKKYQEEFLDYPAATKNHHE-FV-S--GLAYHVVSMLRLAKSICDLYPSL 181 (314)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCChHhhcccc-cc-c--HHHHHHHHHHHHHHHHHHhcccc
Confidence 3567889998888775555555444443331 01 111111 10 1 1368999999988654 46
Q ss_pred CHH-HHHHHhhcccc
Q 003276 188 DWE-SIAAGLLHDTV 201 (834)
Q Consensus 188 D~~-tI~AaLLHDvv 201 (834)
|.+ .+++|||||+=
T Consensus 182 n~dll~agalLHDiG 196 (314)
T PRK13480 182 NKDLLYAGIILHDLG 196 (314)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777 47889999973
No 162
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=43.45 E-value=36 Score=36.28 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred ecCCCcEEeCCCCCcHhHHHhhcccccccceE-------------EEEECCEe--c-CCCccCCCCCeEEE
Q 003276 568 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-------------AAKVNGNL--V-SPTHVLANAEVVEI 622 (834)
Q Consensus 568 ftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~-------------~akvNg~~--v-~l~~~L~~gd~VeI 622 (834)
++-||+.++.|+|.|.+|.|.+.+-.+-..|. -++|||+. + .=.+++++|..|+-
T Consensus 6 i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t 76 (234)
T PRK07569 6 LTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQT 76 (234)
T ss_pred EEECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEE
Confidence 44599999999999999999886655533221 46888853 2 44567888887764
No 163
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=43.42 E-value=32 Score=28.74 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=25.4
Q ss_pred EEEEEe---CcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCI---DRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~---DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
|.|++. +.+|+++++.++|++.++||..+.+
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~ 37 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD 37 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 455443 7899999999999999999976664
No 164
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=43.30 E-value=26 Score=32.83 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.0
Q ss_pred EEEECCEecCCCccCCCCCeEEEEecC
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
..+|||+.+-.++.++.||+|+|-...
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCC
Confidence 568999999999999999999997753
No 165
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=42.60 E-value=69 Score=27.12 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.7
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
+|+.++...|+|+-++.-.+.+ .+--.-+||=.+.-+.+|++||.|-+|.
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~----~~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP----DADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC----CCCEEEEcCcccCCccccCCCCEEEEEe
Confidence 5788999999999888755544 4444578999999999999999998874
No 166
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=42.42 E-value=20 Score=35.63 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=23.3
Q ss_pred cchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003276 172 IIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 172 i~Hpl~VA~ILa----~l~~D~~-tI~AaLLHDvvE 202 (834)
+.|.+.||.+-. .++.|.+ .-+||||||+=.
T Consensus 10 ~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 10 YQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 689999887653 3466654 578999999864
No 167
>PRK06349 homoserine dehydrogenase; Provisional
Probab=42.36 E-value=29 Score=40.37 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=28.7
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
.|++...|++|+|+.|+.++++.++||.++.-
T Consensus 350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 350 YLRLLVADKPGVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred EEEEEecCCcchHHHHHHHHhhcCccEEEEEe
Confidence 47888999999999999999999999998753
No 168
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=41.88 E-value=22 Score=36.93 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=26.7
Q ss_pred cchHHHHHHHHHH----cCCCHH-HHHHHhhccccccCC
Q 003276 172 IIHPVEVARILGE----LELDWE-SIAAGLLHDTVEDTN 205 (834)
Q Consensus 172 i~Hpl~VA~ILa~----l~~D~~-tI~AaLLHDvvEDt~ 205 (834)
+.|.++||..-.+ +++|.+ +-+||+|||.--+-+
T Consensus 19 ~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 19 FEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 7999999987543 477775 578999999987654
No 169
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=40.51 E-value=27 Score=35.19 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=33.7
Q ss_pred CcccchHHHHHHHHH----HcC-----CCHH-HHHHHhhccccccCC------CCCHHHHHhh--hChHHHHHHhh
Q 003276 169 EPFIIHPVEVARILG----ELE-----LDWE-SIAAGLLHDTVEDTN------VVTFERIEEE--FGATVRRIVEG 226 (834)
Q Consensus 169 ePYi~Hpl~VA~ILa----~l~-----~D~~-tI~AaLLHDvvEDt~------~~T~e~I~~~--FG~~Va~LV~g 226 (834)
+..+.|.+.|+.+.. .++ .|.+ ..+||||||+-.... .... ++.+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~-~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGA-EILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHH-HHHHHcCCCHHHHHHHHH
Confidence 445689999987743 344 4544 578999999854211 0112 23333 45667777754
No 170
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=40.25 E-value=19 Score=30.18 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEECCEecCC--CccCCCCCeEEE
Q 003276 600 AAKVNGNLVSP--THVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l--~~~L~~gd~VeI 622 (834)
+..|||+.+.. .++|++||+|+|
T Consensus 43 gt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEESSTSEEEE-TTEEEEE
T ss_pred cEEECCEEcCCCCEEECCCCCEEEc
Confidence 77899999998 557999999986
No 171
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=39.98 E-value=31 Score=27.88 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.1
Q ss_pred EEEECCEec-CCCccCCCCCeEEEE
Q 003276 600 AAKVNGNLV-SPTHVLANAEVVEII 623 (834)
Q Consensus 600 ~akvNg~~v-~l~~~L~~gd~VeIi 623 (834)
+++|||+.+ ...+++..||+|.+.
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~ 51 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVD 51 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEc
Confidence 678999999 888999999998875
No 172
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.30 E-value=43 Score=26.36 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred EeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 803 CIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 803 ~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
..|++|.+++|.+.|++.++||..++.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 578899999999999999999987654
No 173
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=38.59 E-value=76 Score=26.94 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=44.7
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhcccccccce--EEEEECCEecCCCc-----cCCCCCeEEEEec
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~g~~~--~~akvNg~~v~l~~-----~L~~gd~VeIit~ 625 (834)
.|+|-+++|+. ++++...|+.++--.|+...|-.. ..-..+|+...-+. -+++|++|.++-.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 47888898876 558888999999888877665332 23445777655443 4799999999764
No 174
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=38.42 E-value=96 Score=25.99 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=43.4
Q ss_pred ceeeecCCCc--EEeCCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003276 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (834)
Q Consensus 564 ~V~VftP~G~--i~~lp~gaT~lDfAy~ih~~~g~~--~~~akvNg~~v~l~~~-----L~~gd~VeIit 624 (834)
.|+|-+++|+ .++++...|+.|+-..|+...|-. -..-..+|++..-+.. +++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 4788899887 466778899999988887665432 2344458887665544 68888888763
No 175
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=36.97 E-value=46 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred CcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 805 DRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 805 DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
+.+|.++++.++|++.+++|..+...
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999999887654
No 176
>PRK08526 threonine dehydratase; Provisional
Probab=36.21 E-value=49 Score=38.30 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=31.6
Q ss_pred eeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 795 ~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
....|.|..-||+|.|++++++|++.+.||..+.-
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 45678999999999999999999999999988875
No 177
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=35.77 E-value=69 Score=27.16 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=40.4
Q ss_pred ceeeecCCCcEEeC--CCCCcHhHHH--hhccccccc-ceEEEEECCEecCCCcc-----CCCCCeEEEE
Q 003276 564 RVFVFTPRGEIKNL--PKGATVVDYA--YMIHTEIGN-KMVAAKVNGNLVSPTHV-----LANAEVVEII 623 (834)
Q Consensus 564 ~V~VftP~G~i~~l--p~gaT~lDfA--y~ih~~~g~-~~~~akvNg~~v~l~~~-----L~~gd~VeIi 623 (834)
.|+|.+++|+.+.+ ....|...+. |+-...+.. .-+.-..||+.+..+.. +++||+|+++
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 36778888865554 6666766663 444444545 55778889988877764 7999999985
No 178
>PRK11899 prephenate dehydratase; Provisional
Probab=34.90 E-value=57 Score=35.97 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=30.6
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.+.|.+...|++|.|.+|-++++..|+|+.++..+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP 229 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYM 229 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee
Confidence 345666668999999999999999999999998753
No 179
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=34.37 E-value=51 Score=31.96 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=27.8
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
-|.|+..|++|-|..|+.++.++++|+.-+-
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiY 101 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIY 101 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeee
Confidence 4788999999999999999999999996554
No 180
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=33.29 E-value=47 Score=27.46 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred EeCcccHHHHHHHHHHhCCCceeEEE
Q 003276 803 CIDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 803 ~~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
..|++|.+++|.++|++.++||..+.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 46889999999999999999996654
No 181
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=33.11 E-value=22 Score=41.49 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHH---hh-cCCcccCCCcccchHHHHHHHHHHc----CC--CH--------HHHHHHhhccc
Q 003276 144 NELELVRRALMLAFE---AH-DGQKRRSGEPFIIHPVEVARILGEL----EL--DW--------ESIAAGLLHDT 200 (834)
Q Consensus 144 ~~~~~i~~A~~~A~~---aH-~gQ~RksGePYi~Hpl~VA~ILa~l----~~--D~--------~tI~AaLLHDv 200 (834)
.++++++.--++... .| +.-+| +.|.+.|..+...+ +. +. .+.+||||||+
T Consensus 27 ~~FQRLRrIkQLG~a~lvyPgAnHTR------FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 27 PEFQRLRRIKQLGLAYLVYPGANHTR------FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred HHHHHHHHhhhccceeEecCCCcccc------cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 467777766655554 12 22345 79999998876533 21 11 37899999997
No 182
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=32.67 E-value=38 Score=40.54 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=27.2
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
|-+...|++|+++.|+++|++.++||.++..
T Consensus 455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~ 485 (526)
T PRK13581 455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQL 485 (526)
T ss_pred EEEEeCCcCChhHHHHHHHhhcCCCchhcEe
Confidence 5557799999999999999999999977654
No 183
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=31.58 E-value=84 Score=25.62 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred eCcccHHHHHHHHHHhCCCceeEEE
Q 003276 804 IDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 804 ~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
.+.+|++++|.+.|++.+++|.-++
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~ 36 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIA 36 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4789999999999999999996664
No 184
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=31.45 E-value=45 Score=35.17 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=33.7
Q ss_pred EeCCCCCcHhHHHhhcc----cccccce---------EEEEECCEec-CCCccCCC-CCe-EEE
Q 003276 575 KNLPKGATVVDYAYMIH----TEIGNKM---------VAAKVNGNLV-SPTHVLAN-AEV-VEI 622 (834)
Q Consensus 575 ~~lp~gaT~lDfAy~ih----~~~g~~~---------~~akvNg~~v-~l~~~L~~-gd~-VeI 622 (834)
++++.|.|++|++..|+ +.++.+. =+++|||+.+ .-.+++++ |.. +.|
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~~~i 82 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPVMKI 82 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCcEEE
Confidence 45669999999998876 3343221 1689999887 57778888 873 444
No 185
>PRK12704 phosphodiesterase; Provisional
Probab=30.67 E-value=48 Score=39.79 Aligned_cols=34 Identities=47% Similarity=0.679 Sum_probs=25.6
Q ss_pred CCcccchHHHHHHHHH----HcCCCHHH-HHHHhhcccc
Q 003276 168 GEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (834)
Q Consensus 168 GePYi~Hpl~VA~ILa----~l~~D~~t-I~AaLLHDvv 201 (834)
|...+.|.++||.+.. .+|+|.+. ..||||||+=
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIG 371 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 4446789999988753 56887654 7799999974
No 186
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=29.60 E-value=35 Score=40.83 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=26.9
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
|-+.-.|++|+++.|+++|++.++||.+++.
T Consensus 454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~ 484 (525)
T TIGR01327 454 LIILHLDKPGVIGKVGTLLGTAGINIASMQL 484 (525)
T ss_pred EEEEecCcCCcchHHHhHHhhcCCChHHcEe
Confidence 5567799999999999999999999977654
No 187
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=29.34 E-value=82 Score=35.06 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=35.3
Q ss_pred CCcEEeC-CCCCcHhHHHhhcccccccc-----------e--EEEEECCEe--c-CCCccCCCCCeEE
Q 003276 571 RGEIKNL-PKGATVVDYAYMIHTEIGNK-----------M--VAAKVNGNL--V-SPTHVLANAEVVE 621 (834)
Q Consensus 571 ~G~i~~l-p~gaT~lDfAy~ih~~~g~~-----------~--~~akvNg~~--v-~l~~~L~~gd~Ve 621 (834)
||+.+++ |+|.|.+|+|.+.+..|-.- | =-+.|+|+. + .=.+++++|.+|+
T Consensus 74 DGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~ 141 (297)
T PTZ00305 74 NKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII 141 (297)
T ss_pred CCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE
Confidence 8999999 99999999998864443222 1 245677752 2 3345788888776
No 188
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=28.56 E-value=1.8e+02 Score=24.59 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=45.2
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCc-----cCCCCCeEEEEec
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~g~~--~~~akvNg~~v~l~~-----~L~~gd~VeIit~ 625 (834)
.|+|-+++|+. ++++...|+.++=-.|+...|-. ...-..+|+...-+. -+++|++|.++..
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 47889998865 57788889999988888776544 334456787766444 3688999988764
No 189
>PRK12705 hypothetical protein; Provisional
Probab=27.81 E-value=49 Score=39.53 Aligned_cols=35 Identities=43% Similarity=0.644 Sum_probs=26.9
Q ss_pred CCcccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003276 168 GEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 168 GePYi~Hpl~VA~ILa----~l~~D~~-tI~AaLLHDvvE 202 (834)
|...+.|.++||.+.. .+|+|.+ ...||||||+=.
T Consensus 321 gqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 321 GQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 4556789999998763 5688765 478999999854
No 190
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=53 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.6
Q ss_pred EEeCcccHHHHHHHHHHhCCCceeEEEE-ecC
Q 003276 802 VCIDRRGIMADVTTALATVGVTICSCVV-SGQ 832 (834)
Q Consensus 802 ~~~DR~GlLadIt~vIa~~~iNI~sv~~-~t~ 832 (834)
-.+|-.|+|+.|.+.|+++|+-|-.+++ +||
T Consensus 72 f~FgltGilasV~~pLsd~gigIFavStydtD 103 (128)
T COG3603 72 FDFGLTGILASVSQPLSDNGIGIFAVSTYDTD 103 (128)
T ss_pred ccCCcchhhhhhhhhHhhCCccEEEEEeccCc
Confidence 4588999999999999999999998887 665
No 191
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.42 E-value=51 Score=39.49 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=24.8
Q ss_pred cccchHHHHHHHHH----HcCCCHHH-HHHHhhcccc
Q 003276 170 PFIIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (834)
Q Consensus 170 PYi~Hpl~VA~ILa----~l~~D~~t-I~AaLLHDvv 201 (834)
-.+.|.++||.+.. .+|+|.+. ..||||||+=
T Consensus 329 ~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIG 365 (514)
T TIGR03319 329 NVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365 (514)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 35789999998853 57888754 6699999973
No 192
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.17 E-value=66 Score=28.21 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.9
Q ss_pred EeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 803 CIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 803 ~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
..+++|++++|.++|++.++||.-+..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 468899999999999999999977754
No 193
>PRK11507 ribosome-associated protein; Provisional
Probab=26.87 E-value=70 Score=28.20 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.5
Q ss_pred EEEECCEecCCCc-cCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTH-VLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~-~L~~gd~VeI 622 (834)
.++|||..-.-.. +|.+||+|++
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEE
Confidence 5789997655554 5999999998
No 194
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=26.80 E-value=44 Score=37.67 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.1
Q ss_pred CcccchHHHHHHHHH----HcCCCH-HHHHHHhhccccc
Q 003276 169 EPFIIHPVEVARILG----ELELDW-ESIAAGLLHDTVE 202 (834)
Q Consensus 169 ePYi~Hpl~VA~ILa----~l~~D~-~tI~AaLLHDvvE 202 (834)
++.+.|.+.||.+.. .+|+|. +.-.||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 445689999998754 356665 4578999999854
No 195
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.79 E-value=1.2e+02 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.4
Q ss_pred CcccHHHHHHHHHHhCCCceeEEE
Q 003276 805 DRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 805 DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
+++|++++|.++|++.++||.-++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~ 36 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMIS 36 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 689999999999999999996554
No 196
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=25.55 E-value=1.5e+02 Score=25.41 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=43.8
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhccccccc--c--eEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--K--MVAAKVNGNLVSPTH-----VLANAEVVEIITYN 626 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~g~--~--~~~akvNg~~v~l~~-----~L~~gd~VeIit~~ 626 (834)
+|+|-++.|+. ++++...|+.|+=..|+...|- . -..-..+|+...-+. -+++|++|-++-.+
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 47889999976 4667778999998888776653 2 123345787766443 37899998887543
No 197
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=25.45 E-value=67 Score=27.77 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.8
Q ss_pred EeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 803 CIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 803 ~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
..+.+|++++|.++|++.++||..+.+..+
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~~ 40 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSEV 40 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 357799999999999999999987765433
No 198
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=25.22 E-value=74 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.0
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
.|.+-..|.+|+|+.|+-+++.-|-||.+...
T Consensus 79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvV 110 (309)
T KOG2663|consen 79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVV 110 (309)
T ss_pred eEEEEecCCchHHHHHHHHHHhccCCchheee
Confidence 57888999999999999999999999987654
No 199
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=25.06 E-value=80 Score=25.31 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.6
Q ss_pred eCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 804 IDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 804 ~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.+.+|++++|.+.|++.++++..++..
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 467899999999999999999888754
No 200
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.93 E-value=80 Score=25.28 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.5
Q ss_pred eCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 804 IDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 804 ~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.+.+|++++|.+.|++.++++..++..
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 367899999999999999999888753
No 201
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=24.83 E-value=1.2e+02 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.7
Q ss_pred CcccHHHHHHHHHHhCCCceeEEEE
Q 003276 805 DRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 805 DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
++.|++++|.+.+++.+++|..+..
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 7899999999999999999987765
No 202
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=24.70 E-value=2.6e+02 Score=32.61 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=56.4
Q ss_pred ccccCCeeeeeecCCCCCCcCCCCChHHHHHhHhhhhcCCChh-hHHHHHHHH-------HHHHHhhcCCcccCC--Ccc
Q 003276 102 LHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPN-ELELVRRAL-------MLAFEAHDGQKRRSG--EPF 171 (834)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~A~-------~~A~~aH~gQ~RksG--ePY 171 (834)
+.....+|+...... .+.....+++|.+|+.+...+..-.+. -+..+.+.= +++.-..--|....- .+-
T Consensus 150 f~i~~~T~~~i~~~~-~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv 228 (409)
T PRK10885 150 FRIAPETLALMREMV-ASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDT 228 (409)
T ss_pred CCcCHHHHHHHHHhh-hhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcH
Confidence 444455555443322 122355578999999998766543332 233333321 122112223322211 234
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 003276 172 IIHPVEVARILGELELDWESIAAGLLHDTVE 202 (834)
Q Consensus 172 i~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvE 202 (834)
..|-+.|...++.+..+.....||||||+=.
T Consensus 229 ~~Htl~~l~~~~~l~~~l~lr~AaLlHDlGK 259 (409)
T PRK10885 229 GIHTLMVLDQAAKLSPSLDVRFAALCHDLGK 259 (409)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhccccC
Confidence 5798888888887776777888999999853
No 203
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=24.37 E-value=3.1e+02 Score=24.53 Aligned_cols=62 Identities=10% Similarity=0.172 Sum_probs=40.9
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHH--hhcccccccceEEEEECCEecCCCc-----cCCCCCeEEEEec
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYA--YMIHTEIGNKMVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfA--y~ih~~~g~~~~~akvNg~~v~l~~-----~L~~gd~VeIit~ 625 (834)
.|+|-+++|+. +.+....|..++. |+-...+--.-..-.-||+.+.... -+++||+|+++..
T Consensus 13 ~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 13 NLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred EEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 46788999976 4566667777774 4433333333444555777776544 4799999999764
No 204
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=23.79 E-value=18 Score=25.16 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.2
Q ss_pred CCceeeecCCCcEEeC
Q 003276 562 GSRVFVFTPRGEIKNL 577 (834)
Q Consensus 562 ~~~V~VftP~G~i~~l 577 (834)
...+.+|+|+|+++.+
T Consensus 2 D~~~t~FSp~Grl~QV 17 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQV 17 (23)
T ss_dssp SSSTTSBBTTSSBHHH
T ss_pred CCCceeECCCCeEEee
Confidence 3467799999998753
No 205
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.20 E-value=1.5e+02 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred CcccHHHHHHHHHHhCCCceeEEE
Q 003276 805 DRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 805 DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
+++|+++++.+.|++.++||.-++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~ 36 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMIS 36 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 678999999999999999996654
No 206
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=22.85 E-value=79 Score=25.86 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=23.9
Q ss_pred eCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 804 IDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 804 ~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.++.|..++|.++|++.++|+.-+.+..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~ 38 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE 38 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC
Confidence 4779999999999999999998876533
No 207
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=22.50 E-value=1e+02 Score=33.47 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 003276 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (834)
Q Consensus 149 i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~t-I~AaLLHDv 200 (834)
|.+|+++....-..--.....|=|.|.+..|+.+..-.-+++- ..+||+||.
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 4455555444433222234567889999999988765445554 468999985
No 208
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=22.07 E-value=76 Score=36.15 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=42.7
Q ss_pred eeeec--CCC-cEEeCCCCCcHhHHHhhcccccccceEEEEEC-----------------CE--ecCCCccCCCCCeEEE
Q 003276 565 VFVFT--PRG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVVEI 622 (834)
Q Consensus 565 V~Vft--P~G-~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvN-----------------g~--~v~l~~~L~~gd~VeI 622 (834)
++-|| |++ .-+.+-+|.++.+.|--||++.-+..+.|.|+ |+ .+.-+|.+++||++-.
T Consensus 308 i~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~F 387 (391)
T KOG1491|consen 308 IVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFF 387 (391)
T ss_pred eEEEeeCCchheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEE
Confidence 44455 665 56689999999999999999988888777663 22 3445667888887643
No 209
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=21.51 E-value=90 Score=33.22 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=33.2
Q ss_pred EEeCC-CCCcHhHHHhhcc----cccccce---------EEEEECCEec-CCCccCCC--CCeEEEEec
Q 003276 574 IKNLP-KGATVVDYAYMIH----TEIGNKM---------VAAKVNGNLV-SPTHVLAN--AEVVEIITY 625 (834)
Q Consensus 574 i~~lp-~gaT~lDfAy~ih----~~~g~~~---------~~akvNg~~v-~l~~~L~~--gd~VeIit~ 625 (834)
-+++| .|.|++|++..++ +.++.+. =+++|||+.+ .-.+++.. |+++.|-.-
T Consensus 21 ~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~~~~~~tiepl 89 (232)
T PRK05950 21 EVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDLKKGKIVIRPL 89 (232)
T ss_pred EeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHcCCCeEEEEEC
Confidence 45677 8999999999996 2233221 1799999863 23444444 566666444
No 210
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=20.54 E-value=45 Score=35.38 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHH-------cC--CCHHH-HHHHhhccccccCCCCCHHHHH---hhhChHHHHHHhhhcccccccccc
Q 003276 171 FIIHPVEVARILGE-------LE--LDWES-IAAGLLHDTVEDTNVVTFERIE---EEFGATVRRIVEGETKVSKLGKLK 237 (834)
Q Consensus 171 Yi~Hpl~VA~ILa~-------l~--~D~~t-I~AaLLHDvvEDt~~~T~e~I~---~~FG~~Va~LV~gvTkvs~l~k~~ 237 (834)
--.|...||.|..- .| .|+.. ...||.||..|-.- .||. +.+.++...++..|.+.-.-.-+.
T Consensus 30 VA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~Ft----GDI~TPVKy~tPelr~~~~~VE~~m~~~~i~ 105 (215)
T PF12917_consen 30 VAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFT----GDIKTPVKYATPELREMLAQVEEEMTENFIK 105 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS--------S-SSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHc----CCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34688888776532 23 46644 47899999998431 2222 234555555554443211000000
Q ss_pred cccCCcchhhhhHHHHHHHHHhccCC-ceEEeeeehhhhhcc
Q 003276 238 CKNENHSVQDVKADDLRQMFLAMTEE-VRVIIVKLADRLHNM 278 (834)
Q Consensus 238 ~~~~~~~~~~~qae~lRkmLLAm~~D-iRViLIKLADRLhNm 278 (834)
.. ....-.+.+|.++.---+| +-..+||.||.++-+
T Consensus 106 ~~-----iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal 142 (215)
T PF12917_consen 106 KE-----IPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDAL 142 (215)
T ss_dssp HH-----S-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHH
T ss_pred hh-----CCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Confidence 00 0111223455555432222 566788999998755
No 211
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=20.47 E-value=1.4e+02 Score=34.57 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=29.0
Q ss_pred EEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 797 ~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
..|.+...|++|.|.++-++++..|+|+..+..+
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSR 331 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESR 331 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEee
Confidence 3455556799999999999999999999998865
No 212
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.31 E-value=81 Score=27.36 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=31.9
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEEecCC
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVVSGQN 833 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~~ 833 (834)
|.|.|-|..||=.|++.+|-+.|.+|..-.+.||.
T Consensus 3 itvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDG 37 (69)
T cd04894 3 ITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDG 37 (69)
T ss_pred EEEeCCCccCcccHHHHHHHHhceEEEecccccCC
Confidence 78899999999999999999999999888887763
No 213
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.06 E-value=1.1e+02 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=23.6
Q ss_pred EeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 803 CIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 803 ~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
..+.+|.+++|-+++++.++||.=+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 457899999999999999999977754
Done!