Query 003276
Match_columns 834
No_of_seqs 448 out of 2317
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 4E-103 1E-107 870.8 23.3 377 124-553 6-382 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 1.7E-41 5.8E-46 356.7 14.8 169 298-498 19-195 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 2.4E-37 8.3E-42 321.4 16.4 163 371-562 43-213 (226)
4 3nqw_A CG11900; stringent resp 100.0 1.5E-34 5E-39 290.8 7.4 163 143-319 3-172 (179)
5 3nr1_A HD domain-containing pr 100.0 6.2E-33 2.1E-37 278.7 8.8 132 144-289 2-137 (178)
6 3hvz_A Uncharacterized protein 99.9 2.7E-22 9.3E-27 175.2 6.6 71 558-628 1-71 (78)
7 2eki_A DRG 1, developmentally- 99.4 2.1E-13 7E-18 121.9 7.1 64 564-627 11-89 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.3 4.5E-12 1.5E-16 108.2 7.8 65 564-628 2-66 (73)
9 1wwt_A Threonyl-tRNA synthetas 99.2 2.7E-11 9.4E-16 107.4 6.2 66 563-628 10-76 (88)
10 1tke_A Threonyl-tRNA synthetas 98.9 6E-10 2E-14 115.3 5.9 62 565-626 2-63 (224)
11 1wxq_A GTP-binding protein; st 98.9 3.8E-10 1.3E-14 126.4 3.0 64 563-626 318-396 (397)
12 1qf6_A THRRS, threonyl-tRNA sy 97.4 9E-05 3.1E-09 87.8 4.5 62 565-626 2-63 (642)
13 1nyr_A Threonyl-tRNA synthetas 97.3 8.4E-05 2.9E-09 88.1 3.9 63 564-626 3-65 (645)
14 2ko1_A CTR148A, GTP pyrophosph 96.9 0.0014 4.7E-08 56.6 6.1 38 794-831 3-40 (88)
15 4a9a_A Ribosome-interacting GT 96.9 0.0013 4.6E-08 73.0 7.4 61 564-624 300-375 (376)
16 1tyg_B YJBS; alpha beta barrel 96.7 0.0021 7.1E-08 57.0 6.1 55 569-625 24-83 (87)
17 1f0z_A THis protein; ubiquitin 96.7 0.0016 5.5E-08 54.3 5.1 53 571-625 6-62 (66)
18 1zpv_A ACT domain protein; str 96.7 0.0018 6.1E-08 56.6 5.2 36 796-831 5-40 (91)
19 2l32_A Small archaeal modifier 96.6 0.0011 3.9E-08 56.9 3.5 58 566-626 6-63 (74)
20 1rws_A Hypothetical protein PF 96.6 0.00073 2.5E-08 58.3 2.1 55 568-624 18-72 (77)
21 1jal_A YCHF protein; nucleotid 96.5 0.0016 5.5E-08 72.0 5.0 61 564-624 279-361 (363)
22 2dby_A GTP-binding protein; GD 96.5 0.0018 6.1E-08 71.8 4.8 61 564-624 284-366 (368)
23 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0026 9E-08 71.1 5.9 63 564-626 305-389 (396)
24 2hj1_A Hypothetical protein; s 96.4 0.0016 5.6E-08 58.8 3.1 57 574-630 29-90 (97)
25 1ryj_A Unknown; beta/alpha pro 96.3 0.0044 1.5E-07 52.4 5.2 59 565-625 7-66 (70)
26 2cu3_A Unknown function protei 96.3 0.0059 2E-07 50.6 5.7 52 571-625 5-60 (64)
27 2k5p_A THis protein, thiamine- 96.2 0.0028 9.4E-08 55.0 3.5 56 571-627 6-67 (78)
28 2kl0_A Putative thiamin biosyn 96.1 0.0047 1.6E-07 52.9 4.5 54 571-627 6-63 (73)
29 2q5w_D Molybdopterin convertin 95.4 0.013 4.4E-07 49.8 4.4 53 573-625 18-73 (77)
30 1ni3_A YCHF GTPase, YCHF GTP-b 95.2 0.0071 2.4E-07 67.5 2.7 62 563-624 306-389 (392)
31 3po0_A Small archaeal modifier 94.7 0.038 1.3E-06 48.3 5.6 52 573-624 20-84 (89)
32 1vjk_A Molybdopterin convertin 94.3 0.034 1.2E-06 49.8 4.4 52 573-624 29-93 (98)
33 2nyi_A Unknown protein; protei 93.1 0.071 2.4E-06 53.5 4.5 36 796-831 93-128 (195)
34 1fm0_D Molybdopterin convertin 93.0 0.11 3.9E-06 44.3 5.2 47 578-624 23-76 (81)
35 1u8s_A Glycine cleavage system 91.0 0.28 9.7E-06 48.6 6.1 37 796-832 93-129 (192)
36 2g1e_A Hypothetical protein TA 90.4 0.23 7.9E-06 43.1 4.3 52 574-625 18-86 (90)
37 3o1l_A Formyltetrahydrofolate 88.9 0.44 1.5E-05 51.3 5.9 35 797-831 23-57 (302)
38 2fgc_A Acetolactate synthase, 88.1 0.54 1.8E-05 47.4 5.4 45 786-830 18-63 (193)
39 2l52_A Methanosarcina acetivor 87.1 0.52 1.8E-05 42.2 4.3 51 574-625 22-95 (99)
40 3dwg_C 9.5 kDa culture filtrat 87.1 0.72 2.5E-05 40.4 5.1 50 575-625 21-89 (93)
41 3rpf_C Molybdopterin convertin 86.0 0.67 2.3E-05 39.1 4.1 52 573-625 14-70 (74)
42 3dto_A BH2835 protein; all alp 83.2 1.9 6.5E-05 44.2 6.9 54 146-202 4-62 (223)
43 1v8c_A MOAD related protein; r 82.5 1.4 4.8E-05 43.4 5.3 52 574-626 17-84 (168)
44 2f06_A Conserved hypothetical 82.5 1.3 4.6E-05 41.5 5.0 31 799-829 75-105 (144)
45 3b57_A LIN1889 protein; Q92AN1 78.8 2.4 8.3E-05 42.6 5.8 54 147-203 5-63 (209)
46 2qjl_A URM1, ubiquitin-related 77.3 3.5 0.00012 36.7 5.7 50 575-624 24-94 (99)
47 1sc6_A PGDH, D-3-phosphoglycer 68.2 4.6 0.00016 45.0 5.2 35 797-831 332-366 (404)
48 3k5p_A D-3-phosphoglycerate de 64.0 6.9 0.00024 43.8 5.5 37 796-832 343-379 (416)
49 3mtj_A Homoserine dehydrogenas 62.6 5.1 0.00017 45.3 4.2 30 799-828 362-391 (444)
50 3djb_A Hydrolase, HD family; a 60.9 12 0.00039 38.3 6.1 54 146-202 4-62 (223)
51 2k9x_A Tburm1, uncharacterized 60.0 10 0.00034 34.7 4.9 27 599-625 68-98 (110)
52 1ygy_A PGDH, D-3-phosphoglycer 58.7 8.9 0.0003 44.1 5.4 33 798-830 456-488 (529)
53 1wgk_A Riken cDNA 2900073H19 p 58.5 11 0.00037 34.7 4.9 52 575-626 34-105 (114)
54 2pq7_A Predicted HD superfamil 56.4 13 0.00045 37.3 5.6 50 148-200 14-68 (220)
55 3fm8_A Kinesin-like protein KI 56.1 9.2 0.00031 35.7 4.0 23 600-622 91-113 (124)
56 2pjq_A Uncharacterized protein 55.1 12 0.0004 38.3 5.0 54 146-202 9-67 (231)
57 2ibn_A Inositol oxygenase; red 52.7 11 0.00038 39.1 4.3 52 149-200 38-90 (250)
58 2qgs_A Protein Se1688; alpha-h 50.4 18 0.0006 36.7 5.4 54 147-203 5-64 (225)
59 3ccg_A HD superfamily hydrolas 50.1 9.3 0.00032 37.6 3.2 31 172-202 21-56 (190)
60 2o08_A BH1327 protein; putativ 49.9 9.5 0.00032 37.5 3.2 31 171-201 19-54 (188)
61 2k6p_A Uncharacterized protein 49.0 11 0.00036 32.8 3.0 25 600-624 27-51 (92)
62 3gqs_A Adenylate cyclase-like 47.4 12 0.00041 33.3 3.2 23 600-622 70-92 (106)
63 2ogi_A Hypothetical protein SA 47.1 11 0.00038 37.3 3.2 32 171-202 27-63 (196)
64 2re1_A Aspartokinase, alpha an 44.5 15 0.00052 35.3 3.7 34 796-829 103-139 (167)
65 2dt9_A Aspartokinase; protein- 42.4 18 0.00063 34.7 3.9 33 797-829 96-131 (167)
66 2cqz_A 177AA long hypothetical 40.5 18 0.00062 35.4 3.5 34 169-202 31-74 (177)
67 1ndd_A NEDD8, protein (ubiquit 40.5 67 0.0023 25.7 6.6 62 564-625 2-72 (76)
68 2dtj_A Aspartokinase; protein- 40.0 21 0.00073 34.7 4.0 34 796-829 95-131 (178)
69 1dm9_A Hypothetical 15.5 KD pr 39.7 20 0.0007 33.6 3.6 26 600-625 35-60 (133)
70 2dqb_A Deoxyguanosinetriphosph 39.2 17 0.00059 40.1 3.5 57 145-201 45-111 (376)
71 2re1_A Aspartokinase, alpha an 38.4 31 0.001 33.1 4.8 34 796-829 25-59 (167)
72 4ejq_A Kinesin-like protein KI 37.2 18 0.00062 34.7 2.9 23 600-622 111-133 (154)
73 3a9j_A Ubiquitin; protein comp 36.7 82 0.0028 25.1 6.5 62 564-625 2-72 (76)
74 2gz4_A Hypothetical protein AT 31.3 28 0.00097 35.2 3.3 34 169-202 54-89 (207)
75 2paq_A 5'-deoxynucleotidase YF 30.6 36 0.0012 34.1 3.9 35 168-202 29-74 (201)
76 3s1t_A Aspartokinase; ACT doma 30.0 39 0.0013 33.1 4.0 35 796-830 96-133 (181)
77 3a4r_A Nfatc2-interacting prot 29.3 1.3E+02 0.0046 25.1 6.8 61 564-624 9-79 (79)
78 1wln_A Afadin; beta sandwich, 29.1 22 0.00075 32.4 1.9 24 600-623 81-104 (120)
79 2pie_A E3 ubiquitin-protein li 28.6 51 0.0018 30.7 4.4 25 600-624 76-102 (138)
80 4h87_A Kanadaptin; FHA domain 28.0 35 0.0012 31.8 3.1 23 600-622 95-119 (130)
81 2hek_A Hypothetical protein; p 27.9 29 0.001 38.1 2.9 33 170-202 50-88 (371)
82 1zvp_A Hypothetical protein VC 27.4 55 0.0019 30.8 4.4 28 802-829 80-107 (133)
83 1uel_A HHR23B, UV excision rep 27.1 2E+02 0.0069 24.6 7.8 63 564-626 2-76 (95)
84 3tm8_A BD1817, uncharacterized 26.6 36 0.0012 36.4 3.4 35 167-201 162-206 (328)
85 3u7z_A Putative metal binding 26.5 1.4E+02 0.0049 26.8 6.7 50 575-625 25-98 (101)
86 2wyq_A HHR23A, UV excision rep 26.1 1.5E+02 0.0051 24.4 6.6 63 564-626 7-81 (85)
87 3po8_A RV0020C protein, putati 25.7 27 0.00094 30.5 1.8 22 600-622 66-87 (100)
88 2csw_A Ubiquitin ligase protei 25.6 47 0.0016 31.3 3.6 25 600-624 84-110 (145)
89 3gw7_A Uncharacterized protein 25.5 34 0.0012 35.3 2.7 32 172-203 27-63 (239)
90 2qmx_A Prephenate dehydratase; 24.3 85 0.0029 33.2 5.6 36 796-831 200-235 (283)
91 1yx5_B Ubiquitin; proteasome, 23.9 1.7E+02 0.0058 25.0 6.7 63 564-626 2-73 (98)
92 1c05_A Ribosomal protein S4 de 23.8 54 0.0019 31.6 3.7 22 601-622 78-100 (159)
93 1xx7_A Oxetanocin-like protein 23.6 52 0.0018 32.6 3.6 34 169-202 36-79 (184)
94 1ynb_A Hypothetical protein AF 23.6 84 0.0029 30.8 5.0 34 169-202 37-78 (173)
95 1p9k_A ORF, hypothetical prote 23.2 39 0.0013 28.4 2.3 23 600-622 47-70 (79)
96 4egx_A Kinesin-like protein KI 22.5 50 0.0017 32.6 3.2 22 601-622 142-163 (184)
97 2faz_A Ubiquitin-like containi 22.5 1.8E+02 0.0061 23.5 6.2 62 564-625 4-76 (78)
98 2vqe_D 30S ribosomal protein S 22.2 57 0.002 32.9 3.6 22 601-622 126-148 (209)
99 1frr_A Ferredoxin I; electron 22.0 46 0.0016 28.6 2.5 34 565-598 4-38 (95)
100 1zhv_A Hypothetical protein AT 21.8 52 0.0018 31.0 3.0 27 803-829 72-98 (134)
101 2qmw_A PDT, prephenate dehydra 21.7 93 0.0032 32.6 5.2 34 798-831 188-224 (267)
102 3hc1_A Uncharacterized HDOD do 21.6 57 0.0019 34.3 3.6 33 169-201 117-155 (305)
103 2jqj_A DNA damage response pro 21.5 38 0.0013 32.1 2.0 24 600-623 88-112 (151)
104 2xt9_B Putative signal transdu 21.4 41 0.0014 30.3 2.1 22 600-622 74-95 (115)
105 3c8y_A Iron hydrogenase 1; dit 21.1 57 0.002 37.7 3.8 55 567-621 3-73 (574)
106 3hx1_A SLR1951 protein; P74513 20.8 36 0.0012 31.6 1.7 22 600-622 83-104 (131)
107 1gxc_A CHK2, CDS1, serine/thre 20.7 41 0.0014 31.9 2.1 25 600-624 104-130 (149)
108 2dzi_A Ubiquitin-like protein 20.6 1.1E+02 0.0039 24.8 4.6 61 564-624 9-78 (81)
109 3k9o_B Ubiquitin, UBB+1; E2-25 20.0 2.5E+02 0.0086 23.6 6.9 63 564-626 3-74 (96)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=4.3e-103 Score=870.76 Aligned_cols=377 Identities=38% Similarity=0.624 Sum_probs=311.5
Q ss_pred CCChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhcccccc
Q 003276 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (834)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvED 203 (834)
+++.+.+.+.+. .|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++||
T Consensus 6 ~~~~~~l~~~~~---~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvED 82 (393)
T 1vj7_A 6 NLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED 82 (393)
T ss_dssp CCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhc
Confidence 466666766654 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccc
Q 003276 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (834)
Q Consensus 204 t~~~T~e~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~ 283 (834)
|+ +|.++|++.||++|+.||+||||++++. +. +....|+|++|||||||++|+||++|||||||||||++..
T Consensus 83 t~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~---~~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~ 154 (393)
T 1vj7_A 83 TD-ITLDNIEFDFGKDVRDIVDGVTKLGKVE---YK----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKH 154 (393)
T ss_dssp SS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred CC-CCHHHHHHHhCHHHHHHHHHHHhcccCC---cc----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhh
Confidence 99 8999999999999999999999987653 21 1345789999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003276 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQF 363 (834)
Q Consensus 284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~ 363 (834)
+|+++|+++|+||++|||||||||||++||||||||||+||+|++|..|.++|.+.+.+++.+++++...|++.|.+.
T Consensus 155 ~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~-- 232 (393)
T 1vj7_A 155 LRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ-- 232 (393)
T ss_dssp -----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccceeEEEeEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccc
Q 003276 364 LDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAM 443 (834)
Q Consensus 364 l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~ 443 (834)
++.+.|+||+|++||||+||.||+.+|++|+|++||||||++ ..|||.++|+||+.|+|+|++|
T Consensus 233 ----gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~------------~~dcy~vl~~i~~~~~~~~~~~ 296 (393)
T 1vj7_A 233 ----GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET------------QSDVYAMVGYIHELWRPMPGRF 296 (393)
T ss_dssp ----TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS------------HHHHHHHHHHHHHHSCBCTTCC
T ss_pred ----CCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC------------HHHHHHHHHHHHhcCCCCCCcc
Confidence 478999999999999999999999999999999999999765 4699999999999999999999
Q ss_pred cccccCCCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccch
Q 003276 444 KDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNN 523 (834)
Q Consensus 444 kDYIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (834)
||||++||+||||||||+|.++ .+ ++||||||..||.|||+||++||+||+.... .. ..
T Consensus 297 kDyIa~PK~nGYqSlH~~v~~p---~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~--------------~~---~~ 355 (393)
T 1vj7_A 297 KDYIAAPKANGYQSIHTTVYGP---KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRG--------------KV---NQ 355 (393)
T ss_dssp EETTTSCCTTCCCCEEEEEECS---SS-EEEEEEEEHHHHHHHHHTTCC-------------------------------
T ss_pred cccccCCCcCCcceeEEEEEeC---Cc-eEEEEEecHHHHHHHHhhHHHHhccccCCCc--------------cc---ch
Confidence 9999999999999999999754 35 9999999999999999999999999973200 00 01
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 003276 524 ANIALRISWLNAIREWQEEFVGNMTSREFV 553 (834)
Q Consensus 524 ~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~ 553 (834)
.....+++||++|++||++. .++.||+
T Consensus 356 ~~~~~~~~wl~~ll~~~~~~---~~~~ef~ 382 (393)
T 1vj7_A 356 AEQKVGMNWIKELVELQDAS---NGDAVDF 382 (393)
T ss_dssp -------CHHHHHHHC--------------
T ss_pred hhhHHHHHHHHHHHHHHhcC---CCcHHHH
Confidence 11234689999999999985 2467775
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=1.7e-41 Score=356.68 Aligned_cols=169 Identities=21% Similarity=0.212 Sum_probs=126.8
Q ss_pred HHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeEEEeEe
Q 003276 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 377 (834)
Q Consensus 298 ~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~ 377 (834)
.||||||+||||+.+|.|+|++.+.| +..+.+++.+|+.++.+.. ..... ..+ ..|+||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y--~~a~~el~~kl~~l~~e~~-----------~~~~~------~~i-~~V~~Rv 78 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPY--IQAVGELKIKFRGIRKQFR-----------KQKRH------SPI-EFVTGRV 78 (255)
T ss_dssp ----------------CCHHHHTHHH--HHHHHHHHHHHHHHHHHHH-----------HTTSC------CSC-CEEEEEE
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----------Hhhcc------CCc-ceEEeEE
Confidence 48999999999999999999988765 4578887777766543321 11111 122 3799999
Q ss_pred cChHHHHHHHHhcCCCCC----ccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCC
Q 003276 378 KEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPN 453 (834)
Q Consensus 378 K~~ySI~~Km~rk~~~~~----ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~kDYIa~PK~N 453 (834)
|+++||++||.|++.+++ +|+|++|||||++.. +|||.++++||+.|.|.|.++||||++||+|
T Consensus 79 Ks~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~~------------~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~n 146 (255)
T 3l9d_A 79 KPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQFV------------DDVNDVLELLRQRKDMKVIQERDYINNLKPS 146 (255)
T ss_dssp CCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESST------------THHHHHHHHHHTCSSSEEEEEEEESCC-CCC
T ss_pred cCHHHHHHHHHhcCCCccchhhhccccceEEEEEeCH------------HHHHHHHHHHHhcCCCceeeeeccccCCCCC
Confidence 999999999999999887 799999999997755 4999999999999999999999999999999
Q ss_pred CcceeEEEEe-cc---CCCcceeEEEEEechhHHHHHHHHHHhhccCCc
Q 003276 454 GYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (834)
Q Consensus 454 GYqSLHt~V~-~~---~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~ 498 (834)
||||||++|. |. .++.+.+|||||||.+||.|||+||++||+|++
T Consensus 147 GYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 147 GYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 9999999994 31 234578999999999999999999999999996
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=2.4e-37 Score=321.42 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=129.1
Q ss_pred eEEEeEecChHHHHHHHHhcCCCCC----ccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccccc
Q 003276 371 TEIRSVCKEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 446 (834)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~~----ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~kDY 446 (834)
..|+||+|++|||++||.|++.+++ +|+|++|+|||++.. +|||.++++||+.|.|.|.++|||
T Consensus 43 ~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~~------------~d~y~v~~~i~~~~~~~~~~~kDy 110 (226)
T 2be3_A 43 EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFV------------DDVKEVVDILHKRQDMRIIQERDY 110 (226)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESCG------------GGHHHHHHHHHTCSSEEEEEEEET
T ss_pred ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcCH------------HHHHHHHHHHHhccCCceeeecch
Confidence 4799999999999999999999998 999999999997654 599999999999999999999999
Q ss_pred ccCCCCCCcceeEEEE-ecc---CCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccc
Q 003276 447 IATPKPNGYQSLHTTL-IPF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (834)
Q Consensus 447 Ia~PK~NGYqSLHt~V-~~~---~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (834)
|++||+||||||||+| +|. .++.+.++||||||..||.|||+||++||+|++.... .-...+.
T Consensus 111 I~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~-------------~~~~~l~ 177 (226)
T 2be3_A 111 ITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPD-------------EIKKRLE 177 (226)
T ss_dssp TTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCH-------------HHHHHHH
T ss_pred hhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcH-------------HHHHHHH
Confidence 9999999999999999 442 2456789999999999999999999999999963100 0000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccC
Q 003276 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLG 562 (834)
Q Consensus 523 ~~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~~k~dl~~ 562 (834)
.. -+....|.++|++|+++.. ++.+|++.++.+|+.
T Consensus 178 ~~-a~~~~~~d~~m~~i~~~i~---~~~~~~~~~~~~~~~ 213 (226)
T 2be3_A 178 IT-ARIAHQLDEEMGEIRDDIQ---EAQALFDPLSRKLND 213 (226)
T ss_dssp HH-HHHHHHHHHHHHTTHHHHH---HHHHHCCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHh---hhHHHHHHhhHHHhh
Confidence 00 1124689999999999873 478999999999875
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-34 Score=290.79 Aligned_cols=163 Identities=26% Similarity=0.368 Sum_probs=136.9
Q ss_pred hhhHHHHHHHHHHHHHhhcCCccc--CCCcccchHHHHHHHHH-HcCC-CHHHHHHHhhccccccCCCCCHHHHHhhhCh
Q 003276 143 PNELELVRRALMLAFEAHDGQKRR--SGEPFIIHPVEVARILG-ELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGA 218 (834)
Q Consensus 143 ~~~~~~i~~A~~~A~~aH~gQ~Rk--sGePYi~Hpl~VA~ILa-~l~~-D~~tI~AaLLHDvvEDt~~~T~e~I~~~FG~ 218 (834)
..|.+++.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||+||||+ +|.++|++.||+
T Consensus 3 ~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~-~t~e~i~~~FG~ 81 (179)
T 3nqw_A 3 TYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTD-ASFEDVEKLFGP 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSS-CCHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCH
Confidence 346788999999999999999998 69999999999999999 8998 999999999999999999 899999999999
Q ss_pred HHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccCCCCch-hhHHHHHH
Q 003276 219 TVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ-SSIATETL 297 (834)
Q Consensus 219 ~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~~~~kq-~~iA~ETl 297 (834)
+|+.||+||||...+... .....|.+++|+ .|+||++||||||+||||++..+|++++ ..-+++.+
T Consensus 82 ~Va~lV~gvtk~~~~~~~-------~~~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~ 148 (179)
T 3nqw_A 82 DVCGLVREVTDDKSLEKQ-------ERKRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYF 148 (179)
T ss_dssp HHHHHHHHTCCCTTSCHH-------HHHHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhccccCHH-------HHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHH
Confidence 999999999987765421 123456777764 7999999999999999999999887753 34467889
Q ss_pred HHHHHHHhhh--cHHHHHHHHhcc
Q 003276 298 QVFAPLAKLL--GMYQIKSELENL 319 (834)
Q Consensus 298 ~iyaPLA~rL--Gi~~ik~ELEDL 319 (834)
+.|.++++.| |=..+..+|.++
T Consensus 149 ~~~~~v~~~l~~~n~~l~~~~~~~ 172 (179)
T 3nqw_A 149 VWAKKVVDNLRGTNANLELKLDEI 172 (179)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999887 333344444443
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.97 E-value=6.2e-33 Score=278.67 Aligned_cols=132 Identities=39% Similarity=0.565 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCcccC--CCcccchHHHHHHHH-HHcCC-CHHHHHHHhhccccccCCCCCHHHHHhhhChH
Q 003276 144 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARIL-GELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (834)
Q Consensus 144 ~~~~~i~~A~~~A~~aH~gQ~Rks--GePYi~Hpl~VA~IL-a~l~~-D~~tI~AaLLHDvvEDt~~~T~e~I~~~FG~~ 219 (834)
.|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||+||||+ +|.++|++.||++
T Consensus 2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~-~t~e~i~~~FG~~ 80 (178)
T 3nr1_A 2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTD-TTLDEVELHFGAQ 80 (178)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSS-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCHH
Confidence 367899999999999999999987 999999999999999 58996 999999999999999999 8999999999999
Q ss_pred HHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccccCCCCch
Q 003276 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ 289 (834)
Q Consensus 220 Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~~~~~kq 289 (834)
|+.||+||||+..+... .....|.+++| ..|+||++|||||||||||++..++|+.+
T Consensus 81 Va~lV~gvTk~~~~~~~-------~~~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~~ 137 (178)
T 3nr1_A 81 VRRLVEEVTDDKTLPKL-------ERKRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEGW 137 (178)
T ss_dssp HHHHHHHTCCCTTSCHH-------HHHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHhccccchh-------hHHHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCcccc
Confidence 99999999987765321 12234566654 68999999999999999999999887763
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.86 E-value=2.7e-22 Score=175.18 Aligned_cols=71 Identities=42% Similarity=0.822 Sum_probs=63.6
Q ss_pred ccccCCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCC
Q 003276 558 RDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (834)
Q Consensus 558 ~dl~~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~ 628 (834)
.|||+++||||||+|++++||+|+||+||||+||+++|++|++|+|||++|+|+++|++||+|||+|+++.
T Consensus 1 ~~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 1 MDLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp -----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC--
T ss_pred CCCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCcc
Confidence 37999999999999999999999999999999999999999999999999999999999999999998754
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=121.95 Aligned_cols=64 Identities=28% Similarity=0.420 Sum_probs=59.0
Q ss_pred ceeeec-CCCc------EEeC-CCCCcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEecCC
Q 003276 564 RVFVFT-PRGE------IKNL-PKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIITYNA 627 (834)
Q Consensus 564 ~V~Vft-P~G~------i~~l-p~gaT~lDfAy~ih~~~g~~~~~akv-------Ng~~v~l~~~L~~gd~VeIit~~~ 627 (834)
-|.||| |+|+ ++.| |+|+|+.||||+||+++|+.+..|.| ||+.|+++++|++||+|+|++.++
T Consensus 11 lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 11 LVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp EEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCS
T ss_pred eEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCCC
Confidence 578999 7886 4899 99999999999999999999998887 999999999999999999999764
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.29 E-value=4.5e-12 Score=108.20 Aligned_cols=65 Identities=46% Similarity=0.843 Sum_probs=61.9
Q ss_pred ceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCC
Q 003276 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (834)
Q Consensus 564 ~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~ 628 (834)
+|+|++|+|+.+++|.|+|+.|+|+.+|++++..+++|+|||++++|+++|++||.|||+|....
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCC
T ss_pred eEEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999999999998754
No 9
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.16 E-value=2.7e-11 Score=107.45 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=62.3
Q ss_pred CceeeecCCCcEEeCCC-CCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCC
Q 003276 563 SRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (834)
Q Consensus 563 ~~V~VftP~G~i~~lp~-gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~ 628 (834)
..|.|..|+|+++++|. |+|+.|||+.||+.+++.+++|+|||++++|+++|++|+.|||+|.+..
T Consensus 10 ~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp CEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCS
T ss_pred CCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCH
Confidence 45779999999999998 9999999999999999999999999999999999999999999998753
No 10
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.93 E-value=6e-10 Score=115.33 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=60.0
Q ss_pred eeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 003276 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 565 V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
|.|.+|+|+++++|+|+|+.|||+.||+.+++.+++|+|||++++|+++|++|+.|||+|.+
T Consensus 2 i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~ 63 (224)
T 1tke_A 2 PVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAK 63 (224)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTT
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecC
Confidence 56889999999999999999999999999999999999999999999999999999999975
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=3.8e-10 Score=126.40 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=60.5
Q ss_pred Cceeeec---------CCC----cEEeCCCCCcHhHHHhhcccccccceEEE--EECCEecCCCccCCCCCeEEEEecC
Q 003276 563 SRVFVFT---------PRG----EIKNLPKGATVVDYAYMIHTEIGNKMVAA--KVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 563 ~~V~Vft---------P~G----~i~~lp~gaT~lDfAy~ih~~~g~~~~~a--kvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
+-|+||| |+| +.+.||+|+||.||||.||+++|+.|++| ++||+.++++|+|++||+|+|+|++
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC-
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeCC
Confidence 4789999 899 99999999999999999999999999999 8899999999999999999999974
No 12
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.36 E-value=9e-05 Score=87.78 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=59.1
Q ss_pred eeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 003276 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 565 V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
|.|..|||++++++.|.||.|+|..|.+.+++.+++|+|||++++|+++|..+..|+++|.+
T Consensus 2 ~~~~~~d~~~~~~~~~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~ 63 (642)
T 1qf6_A 2 PVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAK 63 (642)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTT
T ss_pred ceEEcCCCCeEEecCCCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecC
Confidence 55778999999999999999999999999999999999999999999999999999999975
No 13
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.34 E-value=8.4e-05 Score=88.06 Aligned_cols=63 Identities=35% Similarity=0.439 Sum_probs=59.1
Q ss_pred ceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 003276 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 564 ~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
.|.|..|||+++++|.|.|+.|+|..|.+.+.+.+++|+|||++++|+++|..+..|+++|.+
T Consensus 3 ~~~i~~~dg~~~~~~~g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~ 65 (645)
T 1nyr_A 3 QINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPG 65 (645)
T ss_dssp -CBBCCTTSCCCBCCTTCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTT
T ss_pred ceEEEeCCCCEEEecCCCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeecc
Confidence 466788999999999999999999999999999999999999999999999999999999975
No 14
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.88 E-value=0.0014 Score=56.57 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=34.5
Q ss_pred ceeEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 794 HSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 794 ~~~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.|...|+|.+.||+|+|++|+++|++.|+||.+++..+
T Consensus 3 ~~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~ 40 (88)
T 2ko1_A 3 DFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNA 40 (88)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEE
T ss_pred cEEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEE
Confidence 36778999999999999999999999999999988754
No 15
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0013 Score=72.98 Aligned_cols=61 Identities=28% Similarity=0.490 Sum_probs=48.7
Q ss_pred ceeeecC-CCcEEe------CCCC-CcHhHHHhhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 003276 564 RVFVFTP-RGEIKN------LPKG-ATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 564 ~V~VftP-~G~i~~------lp~g-aT~lDfAy~ih~~~g~~~~~akv-------Ng~~v~l~~~L~~gd~VeIit 624 (834)
-|.+||- .|++.. +++| ||+.|||..||+++...+..|.| +|+.+..+|.|++||+|+|++
T Consensus 300 Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 300 LVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp CEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred CcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 3556762 344332 3455 89999999999999999998876 568899999999999999987
No 16
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.73 E-value=0.0021 Score=57.02 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=45.6
Q ss_pred cCCCcEEeCCCC-CcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003276 569 TPRGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (834)
Q Consensus 569 tP~G~i~~lp~g-aT~lDfAy~ih~~~g~~~~~akvNg~~v~l----~~~L~~gd~VeIit~ 625 (834)
+=+|+.+++|.| +|+.|+--.+.- ....+++-|||+.||. +++|++||.|+|++.
T Consensus 24 ~vNGe~~el~~~~~Tv~dLL~~L~~--~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 24 QLNGKDVKWKKDTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp EETTEEECCSSSCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred EECCEEEECCCCCCcHHHHHHHhCC--CCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 347899999998 999999777643 3455678999999998 578999999999984
No 17
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.72 E-value=0.0016 Score=54.31 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=44.9
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l----~~~L~~gd~VeIit~ 625 (834)
+|+.+++|.|+|+.|+--.+.- ....+++-|||+.++. +++|++||.|+|++.
T Consensus 6 Ng~~~~~~~~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAMQCAAGQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEECCCTTCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred CCEEEEcCCCCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 6889999999999999766643 3455679999999998 789999999999984
No 18
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.67 E-value=0.0018 Score=56.55 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=32.9
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.+.|.|.+.||+|+|++|+++|++.|+||.+++..+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~ 40 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV 40 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEE
Confidence 457999999999999999999999999999988754
No 19
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.63 E-value=0.0011 Score=56.90 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=44.6
Q ss_pred eeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 003276 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (834)
Q Consensus 566 ~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (834)
.+|+-....+++|.|+|+.|+.-.+.-.. .-+.+.+||+.+|.++.++ ||.|||++.-
T Consensus 6 kl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~--~~VvV~vNG~~v~~d~~l~-GD~VeIv~~V 63 (74)
T 2l32_A 6 EVVGEETSEVAVDDDGTYADLVRAVDLSP--HEVTVLVDGRPVPEDQSVE-VDRVKVLRLI 63 (74)
T ss_dssp ECSSSSEEEEECSTTCSHHHHHHTTCCCS--SCCCEECCCCCCCTTSSSC-CCCEEECSSC
T ss_pred EEeCccceeEEcCCCCcHHHHHHHcCCCc--ceEEEEECCEECCHHHCCC-CCEEEEEEee
Confidence 34433344589999999999987765433 2336899999999999886 9999999864
No 20
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=96.59 E-value=0.00073 Score=58.27 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=46.5
Q ss_pred ecCCCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 568 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 568 ftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
...+|+.+++|.|+|+.|+...+.-. ...+.+-|||+.++.+++|++||.|+|++
T Consensus 18 ~~~n~~~~~~~~~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 18 GRNIEKEIEWREGMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp TCCCCCCCCCCSSCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred cccCCEEEECCCCCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 34678899999999999998777643 24457889999999999999999999986
No 21
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.55 E-value=0.0016 Score=72.01 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=52.7
Q ss_pred ceeeec--CC-CcEEeCCCCCcHhHHHhhcccccccceEEEEE----------C-------C--EecCCCccCCCCCeEE
Q 003276 564 RVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------N-------G--NLVSPTHVLANAEVVE 621 (834)
Q Consensus 564 ~V~Vft--P~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv----------N-------g--~~v~l~~~L~~gd~Ve 621 (834)
-|.+|| |+ -+.+.+++|+|+.|+|+.||+++.+.++.|.| . | +...-+|.+++||+|+
T Consensus 279 li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~ 358 (363)
T 1jal_A 279 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358 (363)
T ss_dssp EEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEE
Confidence 466777 43 27999999999999999999999999999998 1 5 6779999999999999
Q ss_pred EEe
Q 003276 622 IIT 624 (834)
Q Consensus 622 Iit 624 (834)
+-.
T Consensus 359 f~f 361 (363)
T 1jal_A 359 FRF 361 (363)
T ss_dssp EES
T ss_pred EEe
Confidence 864
No 22
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.47 E-value=0.0018 Score=71.77 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=52.6
Q ss_pred ceeeec--CC-CcEEeCCCCCcHhHHHhhcccccccceEEEEE----------C-------C--EecCCCccCCCCCeEE
Q 003276 564 RVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------N-------G--NLVSPTHVLANAEVVE 621 (834)
Q Consensus 564 ~V~Vft--P~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akv----------N-------g--~~v~l~~~L~~gd~Ve 621 (834)
-|.+|| |+ -+.+.+++|+|+.|+|+.||+++.+.++.|.| . | +...-+|++++||+|+
T Consensus 284 li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~ 363 (368)
T 2dby_A 284 LLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIY 363 (368)
T ss_dssp EEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEE
T ss_pred CEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEE
Confidence 466777 44 27999999999999999999999999999998 1 5 6778999999999999
Q ss_pred EEe
Q 003276 622 IIT 624 (834)
Q Consensus 622 Iit 624 (834)
+-.
T Consensus 364 ~~f 366 (368)
T 2dby_A 364 VLF 366 (368)
T ss_dssp EEC
T ss_pred EEe
Confidence 864
No 23
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.43 E-value=0.0026 Score=71.08 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=53.7
Q ss_pred ceeeec--CC-CcEEeCCCCCcHhHHHhhcccccccceEEEEEC-----------------C--EecCCCccCCCCCeEE
Q 003276 564 RVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------G--NLVSPTHVLANAEVVE 621 (834)
Q Consensus 564 ~V~Vft--P~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvN-----------------g--~~v~l~~~L~~gd~Ve 621 (834)
-|.+|| |+ =+.+.+++|+|+.|+|+.||+|+...++.|.|= | +...-+|++++||+|+
T Consensus 305 li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~ 384 (396)
T 2ohf_A 305 LEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIF 384 (396)
T ss_dssp EEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEE
Confidence 466777 44 378999999999999999999999999988862 3 8999999999999999
Q ss_pred EEecC
Q 003276 622 IITYN 626 (834)
Q Consensus 622 Iit~~ 626 (834)
+-..-
T Consensus 385 f~fn~ 389 (396)
T 2ohf_A 385 FKFNT 389 (396)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 98753
No 24
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.37 E-value=0.0016 Score=58.82 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=44.0
Q ss_pred EEeCCCCCcHhHHHhhc-----ccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCCC
Q 003276 574 IKNLPKGATVVDYAYMI-----HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSS 630 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~i-----h~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~~~ 630 (834)
.+++|.|+|+.|+--+. |+++.-.....-|||+.++++++|++||.|||+..=...|
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~~DP 90 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADP 90 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC---
T ss_pred EEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEecccCCH
Confidence 45899999999986543 5565554567889999999999999999999987644444
No 25
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.31 E-value=0.0044 Score=52.37 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=45.5
Q ss_pred eeeecCC-CcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 565 VFVFTPR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 565 V~VftP~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
|+|-... .+.+++|.|.|+.|+--.+.-. ...+.+-|||+.++.+++|++||.|+|++.
T Consensus 7 i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 7 FTVITDDGKKILESGAPRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEETTEEEEEEESSCCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred EEEeCccCceeEECCCCCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 4444332 3348999999999997766433 344578899999999999999999999974
No 26
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.26 E-value=0.0059 Score=50.57 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=43.5
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~----~~L~~gd~VeIit~ 625 (834)
+|+.+++ .|+|+.|+--.+.-. ...+++-|||+.++.+ ++|++||.|+|++.
T Consensus 5 Ng~~~~~-~~~tv~~ll~~l~~~--~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL-EGKTLKEVLEEMGVE--LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC-TTCCHHHHHHHHTBC--GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc-CCCcHHHHHHHcCCC--CCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 6888999 899999997666433 4556788999999976 89999999999984
No 27
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.20 E-value=0.0028 Score=55.03 Aligned_cols=56 Identities=13% Similarity=0.315 Sum_probs=45.7
Q ss_pred CCcEEeCC--CCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEecCC
Q 003276 571 RGEIKNLP--KGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYNA 627 (834)
Q Consensus 571 ~G~i~~lp--~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~----~~L~~gd~VeIit~~~ 627 (834)
+|+.+++| .|.|..|+.-.+.-+- ...+++.|||..||-+ +.|++||.|||++.-.
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~Vg 67 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMG 67 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCC
T ss_pred CCEEEEcCCCCCCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEeeec
Confidence 58899999 9999999976664331 3445788999999997 7899999999998643
No 28
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.12 E-value=0.0047 Score=52.85 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=44.6
Q ss_pred CCcEEeCCCCCcHhHHHhhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEecCC
Q 003276 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYNA 627 (834)
Q Consensus 571 ~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvNg~~v~l~----~~L~~gd~VeIit~~~ 627 (834)
+|+.+++ .|.|+.|+.-.+.-. ...+++.+||..||.+ +.|++||.|||++.-.
T Consensus 6 NG~~~e~-~~~Tl~~LL~~l~~~--~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~Vg 63 (73)
T 2kl0_A 6 NGEQREV-QSASVAALMTELDCT--GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQ 63 (73)
T ss_dssp TTEEECC-CCSBHHHHHHHTTCC--SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCC
T ss_pred CCEEEEc-CCCcHHHHHHHcCCC--CCcEEEEECCEECChHHcCcccCCCCCEEEEEcccc
Confidence 5889999 899999998766433 3455799999999995 7899999999999754
No 29
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.41 E-value=0.013 Score=49.84 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=40.1
Q ss_pred cEEeCCCCCcHhHHHhhc---ccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 003276 573 EIKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~i---h~~~g~~~~~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
..+++|.|+|+.|+--.+ |+++..-....-|||+.++.+++|++||.|+|++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEECC
Confidence 356778999999976554 34332211278899999999999999999999863
No 30
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.22 E-value=0.0071 Score=67.53 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=50.7
Q ss_pred Cceeeec--CC-CcEEeCCCCCcHhHHHhhcccccccceEEEEEC-----------------CE--ecCCCccCCCCCeE
Q 003276 563 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVV 620 (834)
Q Consensus 563 ~~V~Vft--P~-G~i~~lp~gaT~lDfAy~ih~~~g~~~~~akvN-----------------g~--~v~l~~~L~~gd~V 620 (834)
+-|.+|| |+ -+.+.+++|+|+-|+|+.||||+.+.++.|.|= |+ ...-+|.+++||+|
T Consensus 306 ~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~ 385 (392)
T 1ni3_A 306 NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIA 385 (392)
T ss_dssp TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEE
Confidence 3566777 33 279999999999999999999999999988885 43 35677999999999
Q ss_pred EEEe
Q 003276 621 EIIT 624 (834)
Q Consensus 621 eIit 624 (834)
.+-.
T Consensus 386 ~f~f 389 (392)
T 1ni3_A 386 HWKA 389 (392)
T ss_dssp ECC-
T ss_pred EEEc
Confidence 8754
No 31
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.73 E-value=0.038 Score=48.31 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=41.2
Q ss_pred cEEeCCCCCcHhHHHhhc---cccccc----------ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~i---h~~~g~----------~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
..+++|.|+|+-|+--.+ |+++.. ..+..-|||+.++++++|++||.|.|+.
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 356889999999975444 565532 1257789999999999999999999986
No 32
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.34 E-value=0.034 Score=49.77 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=40.4
Q ss_pred cEEeCCCCCcHhHHHhhc---cccccc----------ceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 573 EIKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~i---h~~~g~----------~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
..+++|.|+|+.|+--.+ ++++.. ..+.+-|||+.++++++|++||.|+|+.
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 456788899998875444 333322 3467889999999999999999999986
No 33
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.06 E-value=0.071 Score=53.48 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=32.3
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
...|.|.|.||+|+++.||++|++.|+||..+...+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t 128 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETET 128 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeee
Confidence 446899999999999999999999999998887754
No 34
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.03 E-value=0.11 Score=44.26 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=35.3
Q ss_pred CCCCcHhHHHhhcc---cccc----cceEEEEECCEecCCCccCCCCCeEEEEe
Q 003276 578 PKGATVVDYAYMIH---TEIG----NKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 578 p~gaT~lDfAy~ih---~~~g----~~~~~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
|.|+|+.|+--.+. +++. ...+.+-|||+.++++++|++||.|+|+.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeC
Confidence 67889988754442 3221 12246889999999999999999999986
No 35
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.00 E-value=0.28 Score=48.62 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=32.6
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
...|.|.+.||+|+|++|+++|++.++||..+...|+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~ 129 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI 129 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcc
Confidence 4468999999999999999999999999988877543
No 36
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=90.40 E-value=0.23 Score=43.10 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=38.4
Q ss_pred EEeCCCCCcHhHHHhhcccc---ccc----------ceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003276 574 IKNLPKGATVVDYAYMIHTE---IGN----------KMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~ih~~---~g~----------~~~~akvNg~~v~----l~~~L~~gd~VeIit~ 625 (834)
..++|.|+|+.|+--.+... +.. ..+.+-|||+.++ ++++|++||.|+|++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 45677889999975554322 211 2357889999997 7899999999999863
No 37
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.90 E-value=0.44 Score=51.27 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.5
Q ss_pred EEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 797 ~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
..|.|.|-||+|+++.||+.|++.|+||..++..+
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~ 57 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHS 57 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEe
Confidence 35899999999999999999999999998887654
No 38
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=88.06 E-value=0.54 Score=47.44 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=31.7
Q ss_pred cccCCCCCce-eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 786 ATWHNLEGHS-IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 786 v~W~~~~~~~-~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
+.|+...... .-.|.|.+.|++|+|++|+.+++..|.||.++++.
T Consensus 18 ~~~~~m~~~~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~ 63 (193)
T 2fgc_A 18 YFQGHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVG 63 (193)
T ss_dssp ---------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred hhhccCCccceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEee
Confidence 6786444322 23689999999999999999999999999998873
No 39
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=87.13 E-value=0.52 Score=42.21 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=36.8
Q ss_pred EEeCCCCCcHhHHHhhc---ccccccc---------eE-------EEEECCEec----CCCccCCCCCeEEEEec
Q 003276 574 IKNLPKGATVVDYAYMI---HTEIGNK---------MV-------AAKVNGNLV----SPTHVLANAEVVEIITY 625 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~i---h~~~g~~---------~~-------~akvNg~~v----~l~~~L~~gd~VeIit~ 625 (834)
-.+++ |+|+.|+--.+ |+++... .+ .+-|||+.+ .++++|++||.|+|+..
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 34555 78988875444 4444332 23 788999999 68999999999999863
No 40
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=87.10 E-value=0.72 Score=40.44 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=37.0
Q ss_pred EeCCCCCcHhHHHhhc---cccccc------------ceEEEEECCEecC----CCccCCCCCeEEEEec
Q 003276 575 KNLPKGATVVDYAYMI---HTEIGN------------KMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (834)
Q Consensus 575 ~~lp~gaT~lDfAy~i---h~~~g~------------~~~~akvNg~~v~----l~~~L~~gd~VeIit~ 625 (834)
++ +.|+|+.|+--.+ |+++.. ..+..-|||+.++ ++++|++||.|.|+..
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 45 5689999875444 343321 1367889999998 6999999999999873
No 41
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=85.95 E-value=0.67 Score=39.08 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=38.0
Q ss_pred cEEeCCCCCcHhHHHhhcc--ccccc--ceEEEEECCEe-cCCCccCCCCCeEEEEec
Q 003276 573 EIKNLPKGATVVDYAYMIH--TEIGN--KMVAAKVNGNL-VSPTHVLANAEVVEIITY 625 (834)
Q Consensus 573 ~i~~lp~gaT~lDfAy~ih--~~~g~--~~~~akvNg~~-v~l~~~L~~gd~VeIit~ 625 (834)
+.+++ .|+|+.|+--.+. +.+.. ..+..-|||+. ...+++|++||.|.|+..
T Consensus 14 ~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 14 ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEECC
T ss_pred eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEECC
Confidence 34677 7899999854443 22221 34678899999 778889999999999863
No 42
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=83.19 E-value=1.9 Score=44.25 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhccccc
Q 003276 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (834)
Q Consensus 146 ~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~~D~~t-I~AaLLHDvvE 202 (834)
.++|.++.+|+.+.+.+.. +.-=+.|..+|+.+... .+.|.+. .+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDEY---SGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcCC---CCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3568888889888876541 22337899999876543 4678764 78999999983
No 43
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=82.48 E-value=1.4 Score=43.36 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=39.0
Q ss_pred EEeCCCCCcHhHHHhhc---cccccc---------ceEEEEECCEecCC----CccCCCCCeEEEEecC
Q 003276 574 IKNLPKGATVVDYAYMI---HTEIGN---------KMVAAKVNGNLVSP----THVLANAEVVEIITYN 626 (834)
Q Consensus 574 i~~lp~gaT~lDfAy~i---h~~~g~---------~~~~akvNg~~v~l----~~~L~~gd~VeIit~~ 626 (834)
.+++|. +|+.|+--.+ |+++.. ..+.+-|||+.++. +++|++||.|+|+..-
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~PpV 84 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPV 84 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECSC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECcc
Confidence 456774 8998875444 444432 33578899999998 8999999999999853
No 44
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=82.45 E-value=1.3 Score=41.51 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=26.7
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+.|...|++|+|++|+++|++.|+||..+.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~ 105 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYS 105 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEE
Confidence 5667889999999999999999999966443
No 45
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=78.79 E-value=2.4 Score=42.62 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhcccccc
Q 003276 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVED 203 (834)
Q Consensus 147 ~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~~D~~t-I~AaLLHDvvED 203 (834)
+++.++.++......+. ....-+.|.++|+.+... .+.|.+. .+||||||+.-.
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~ 63 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDI 63 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCcc
Confidence 45666666666554422 111227899999887643 3678764 789999999743
No 46
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=77.30 E-value=3.5 Score=36.65 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=35.4
Q ss_pred EeCC--CCCcHhHHHhhc---ccc----c------cc--ceEEEEECCEecC----CCccCCCCCeEEEEe
Q 003276 575 KNLP--KGATVVDYAYMI---HTE----I------GN--KMVAAKVNGNLVS----PTHVLANAEVVEIIT 624 (834)
Q Consensus 575 ~~lp--~gaT~lDfAy~i---h~~----~------g~--~~~~akvNg~~v~----l~~~L~~gd~VeIit 624 (834)
+++| .|+|+-|+--.+ |+. + |. ..+-+-|||+.+. ++++|++||.|.|+.
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 4667 789999874443 332 2 21 1235889999764 789999999999986
No 47
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=68.18 E-value=4.6 Score=44.98 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=30.9
Q ss_pred EEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 797 ~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
..|.+.-.|++|+|+.|+++|++.++||.+....+
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r 366 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT 366 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC
Confidence 35888899999999999999999999998877654
No 48
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=64.04 E-value=6.9 Score=43.84 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.5
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEecC
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSGQ 832 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t~ 832 (834)
..+|.+.-.|.+|||+.|++++++.|+||.+....|.
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~ 379 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTD 379 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCC
Confidence 3578888999999999999999999999988876654
No 49
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=62.61 E-value=5.1 Score=45.28 Aligned_cols=30 Identities=33% Similarity=0.563 Sum_probs=26.5
Q ss_pred EEEEEeCcccHHHHHHHHHHhCCCceeEEE
Q 003276 799 FSVVCIDRRGIMADVTTALATVGVTICSCV 828 (834)
Q Consensus 799 I~V~~~DR~GlLadIt~vIa~~~iNI~sv~ 828 (834)
|++.+.|++|+|++|++++++.+++|.++.
T Consensus 362 ~r~~~~d~~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 362 LRLRAFDRPGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence 577789999999999999999999998874
No 50
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=60.87 E-value=12 Score=38.33 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHc----CCCHHH-HHHHhhccccc
Q 003276 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGEL----ELDWES-IAAGLLHDTVE 202 (834)
Q Consensus 146 ~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l----~~D~~t-I~AaLLHDvvE 202 (834)
.++|.++.+|+.+.+.+.. +..=+.|..+|+.+...+ +.|.+. .+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKDA---SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSS---CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCC---CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 4678888999988876542 223378999998876543 567664 78999999984
No 51
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=59.99 E-value=10 Score=34.71 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.7
Q ss_pred EEEEECCEec----CCCccCCCCCeEEEEec
Q 003276 599 VAAKVNGNLV----SPTHVLANAEVVEIITY 625 (834)
Q Consensus 599 ~~akvNg~~v----~l~~~L~~gd~VeIit~ 625 (834)
+-+.|||+-+ .++|+|++||.|.|+..
T Consensus 68 IlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 68 ILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp EEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred eEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 5689999987 68999999999999875
No 52
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=58.70 E-value=8.9 Score=44.06 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=29.9
Q ss_pred EEEEEEeCcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 798 ~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.|.+.-.|++|+++.|+++|++.++||.++.+.
T Consensus 456 ~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~ 488 (529)
T 1ygy_A 456 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLS 488 (529)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEe
Confidence 477788999999999999999999999988874
No 53
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=58.50 E-value=11 Score=34.65 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.0
Q ss_pred EeCC---CCCcHhHHHhhccc-------cc----c--cceEEEEECCEec----CCCccCCCCCeEEEEecC
Q 003276 575 KNLP---KGATVVDYAYMIHT-------EI----G--NKMVAAKVNGNLV----SPTHVLANAEVVEIITYN 626 (834)
Q Consensus 575 ~~lp---~gaT~lDfAy~ih~-------~~----g--~~~~~akvNg~~v----~l~~~L~~gd~VeIit~~ 626 (834)
+++| .++|+-|+--.+-. ++ | +..+-..|||+-+ .++|+|++||.|.|+..-
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTL 105 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEECS
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCCC
Confidence 6667 34688886433322 22 2 2246799999854 689999999999999853
No 54
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=56.38 E-value=13 Score=37.26 Aligned_cols=50 Identities=26% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhccc
Q 003276 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDT 200 (834)
Q Consensus 148 ~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~~D~~t-I~AaLLHDv 200 (834)
++.++.++......+. .....+.|.+.|+.+... ++.|.+. .+||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 4556677776655421 223346899999987643 4677654 789999998
No 55
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=56.13 E-value=9.2 Score=35.65 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=21.1
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeI 622 (834)
+..|||+.|.-.++|++||+|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 78899999987788999999998
No 56
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=55.09 E-value=12 Score=38.27 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHH----cCCCHHH-HHHHhhccccc
Q 003276 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (834)
Q Consensus 146 ~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~----l~~D~~t-I~AaLLHDvvE 202 (834)
..++.++.++......++. ..-=+.|..+|+..... .+.|.+. .+||||||+..
T Consensus 9 ~~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 9 ETQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3456677777766554321 11226899999887643 3678775 68999999974
No 57
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=52.65 E-value=11 Score=39.08 Aligned_cols=52 Identities=25% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 003276 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (834)
Q Consensus 149 i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~t-I~AaLLHDv 200 (834)
|.+|+++-.......-...-.|=+.|.+..|.....-|.|.+- +.||||||.
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDL 90 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 90 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhcc
Confidence 4555555444433332223455578999999988877888444 589999996
No 58
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=50.39 E-value=18 Score=36.73 Aligned_cols=54 Identities=22% Similarity=0.097 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHH----HH-cCCCHH-HHHHHhhcccccc
Q 003276 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL----GE-LELDWE-SIAAGLLHDTVED 203 (834)
Q Consensus 147 ~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~IL----a~-l~~D~~-tI~AaLLHDvvED 203 (834)
.++.++.++......++. ...-+.|.+.|+... +. .+.|.+ ..+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHDT---TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTCS---SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCC---CccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 456677777776655321 112368999999874 32 356665 4789999999863
No 59
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=50.13 E-value=9.3 Score=37.58 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=23.7
Q ss_pred cchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003276 172 IIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 172 i~Hpl~VA~ILa----~l~~D~~-tI~AaLLHDvvE 202 (834)
+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 21 ~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 21 YKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 689999987753 4688765 478999999843
No 60
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=49.87 E-value=9.5 Score=37.46 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhcccc
Q 003276 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (834)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~~D~~-tI~AaLLHDvv 201 (834)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=
T Consensus 19 ~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIG 54 (188)
T 2o08_A 19 RYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYA 54 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3579999987753 4688765 47899999984
No 61
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=48.96 E-value=11 Score=32.80 Aligned_cols=25 Identities=12% Similarity=0.237 Sum_probs=21.7
Q ss_pred EEEECCEecCCCccCCCCCeEEEEe
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEIIT 624 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeIit 624 (834)
.++|||+.+..++.|+.||+|+|.-
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEECC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEEe
Confidence 3689999998899999999999843
No 62
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=47.38 E-value=12 Score=33.32 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeI 622 (834)
|..|||+.+.-..+|++||+|.|
T Consensus 70 Gt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 70 GVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp CCEETTEECSSEEECCTTCCEEE
T ss_pred CeEECCEECCCCeECCCCCEEEE
Confidence 66799999887678999999987
No 63
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=47.07 E-value=11 Score=37.32 Aligned_cols=32 Identities=31% Similarity=0.237 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 003276 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 171 Yi~Hpl~VA~ILa----~l~~D~~-tI~AaLLHDvvE 202 (834)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 3579999987753 4688765 468999999843
No 64
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=44.46 E-value=15 Score=35.32 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.8
Q ss_pred eEEEEEEEeC---cccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCID---RRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~D---R~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
..-+.|.+.+ ++|+++.+.++|++.++||..+++
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist 139 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST 139 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc
Confidence 3457777776 899999999999999999988764
No 65
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=42.43 E-value=18 Score=34.69 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=27.8
Q ss_pred EEEEEEEeC---cccHHHHHHHHHHhCCCceeEEEE
Q 003276 797 QWFSVVCID---RRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 797 ~~I~V~~~D---R~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
+-+.|++.+ ++|+++.+.++|++.|+||.-+++
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~ 131 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT 131 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 346777766 899999999999999999977654
No 66
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=40.47 E-value=18 Score=35.42 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=25.6
Q ss_pred CcccchHHHHHHHH---HH------cCCCHH-HHHHHhhccccc
Q 003276 169 EPFIIHPVEVARIL---GE------LELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 169 ePYi~Hpl~VA~IL---a~------l~~D~~-tI~AaLLHDvvE 202 (834)
+.-..|-..||.+. +. -+.|.+ .+.+|||||+.|
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E 74 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAE 74 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHH
Confidence 44467999888775 43 467876 588999999976
No 67
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=40.46 E-value=67 Score=25.66 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=44.7
Q ss_pred ceeeecCCCc--EEeCCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003276 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~--i~~lp~gaT~lDfAy~ih~~~g~--~~~~akvNg~~v~l~~~-----L~~gd~VeIit~ 625 (834)
+|+|-+++|+ .++++...|+.|+--.|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4788888887 46788999999998888765543 23445568887654433 579999988753
No 68
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=39.99 E-value=21 Score=34.72 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=28.0
Q ss_pred eEEEEEEEe---CcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVVCI---DRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~~~---DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
.+-|.|++. +.+|+++.+.++|++.++||.-+++
T Consensus 95 ~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ist 131 (178)
T 2dtj_A 95 VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST 131 (178)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred eEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEc
Confidence 334666666 8899999999999999999977764
No 69
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=39.73 E-value=20 Score=33.60 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=22.5
Q ss_pred EEEECCEecCCCccCCCCCeEEEEec
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEIITY 625 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeIit~ 625 (834)
.++|||+.+..++.|+.||+|+|...
T Consensus 35 ~V~VNG~~vk~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 35 KVHYNGQRSKPSKIVELNATLTLRQG 60 (133)
T ss_dssp CEEETTEECCTTCBCCTTCEEEEEET
T ss_pred cEEECCEEcCCCCEeCCCCEEEEEeC
Confidence 36899999999999999999998653
No 70
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=39.18 E-value=17 Score=40.07 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhhcCCccc--CCCc---ccchHHHHHHHHH----HcCCCHHH-HHHHhhcccc
Q 003276 145 ELELVRRALMLAFEAHDGQKRR--SGEP---FIIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (834)
Q Consensus 145 ~~~~i~~A~~~A~~aH~gQ~Rk--sGeP---Yi~Hpl~VA~ILa----~l~~D~~t-I~AaLLHDvv 201 (834)
|.+.|-..-.|=.-.+..|.-. .|.- =++|.++||.+-. .+|++++. -+||||||+=
T Consensus 45 D~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 45 DRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4444545445544456666521 2322 2589999998753 57888765 6899999985
No 71
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=38.43 E-value=31 Score=33.14 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=28.3
Q ss_pred eEEEEEE-EeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 796 IQWFSVV-CIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 796 ~~~I~V~-~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
...|.|. ..|++|.+++|.++|++.++||.-+..
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 3346666 589999999999999999999977754
No 72
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=37.18 E-value=18 Score=34.71 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeI 622 (834)
+..|||+.|.-.+.|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 68899999977778999999988
No 73
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=36.71 E-value=82 Score=25.14 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=44.4
Q ss_pred ceeeecCCCc--EEeCCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEec
Q 003276 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~--i~~lp~gaT~lDfAy~ih~~~g~--~~~~akvNg~~v~l~~~-----L~~gd~VeIit~ 625 (834)
+|+|-+++|+ .++++...|+.|+--.|+...|- .-..-..+|+...-+.. +++|++|.++..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4778888887 46788899999998887765543 23455568877644433 579999998764
No 74
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=31.31 E-value=28 Score=35.25 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.5
Q ss_pred CcccchHHHHHHHHHHc--CCCHHHHHHHhhccccc
Q 003276 169 EPFIIHPVEVARILGEL--ELDWESIAAGLLHDTVE 202 (834)
Q Consensus 169 ePYi~Hpl~VA~ILa~l--~~D~~tI~AaLLHDvvE 202 (834)
+.--.|.+.||.+...+ +.|...+.+||+||+.|
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E 89 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPE 89 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchH
Confidence 33457999999876533 56778899999999987
No 75
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=30.58 E-value=36 Score=34.07 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCcccchHHHHHHHH---H-----Hc--CCCHH-HHHHHhhccccc
Q 003276 168 GEPFIIHPVEVARIL---G-----EL--ELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 168 GePYi~Hpl~VA~IL---a-----~l--~~D~~-tI~AaLLHDvvE 202 (834)
++.-..|.+.||.+- + .+ ++|.+ ++.+|||||+.|
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccc
Confidence 466678999998764 3 22 46765 578999999987
No 76
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=29.99 E-value=39 Score=33.13 Aligned_cols=35 Identities=34% Similarity=0.358 Sum_probs=28.5
Q ss_pred eEEEEEEEe---CcccHHHHHHHHHHhCCCceeEEEEe
Q 003276 796 IQWFSVVCI---DRRGIMADVTTALATVGVTICSCVVS 830 (834)
Q Consensus 796 ~~~I~V~~~---DR~GlLadIt~vIa~~~iNI~sv~~~ 830 (834)
.+-+.|++. +++|+++.+.++|+++++||.-+++.
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS 133 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS 133 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC
Confidence 334566555 89999999999999999999888743
No 77
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=29.28 E-value=1.3e+02 Score=25.14 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=40.8
Q ss_pred ceeeecCCCc-E--EeCCCCCcHhHH--HhhcccccccceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003276 564 RVFVFTPRGE-I--KNLPKGATVVDY--AYMIHTEIGNKMVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (834)
Q Consensus 564 ~V~VftP~G~-i--~~lp~gaT~lDf--Ay~ih~~~g~~~~~akvNg~~v~l~~~-----L~~gd~VeIit 624 (834)
.|.|-+++|+ . +.+....+...+ ||+-...+--..+.-..+|+.+..+.. +++||+|++.+
T Consensus 9 ~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 9 RLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 4668889995 4 445555554444 555554454456677778888877653 79999999864
No 78
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=29.13 E-value=22 Score=32.41 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred EEEECCEecCCCccCCCCCeEEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEII 623 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeIi 623 (834)
+..|||+.+.-.++|++||+|.|=
T Consensus 81 gt~vNg~~i~~~~~L~~GD~I~iG 104 (120)
T 1wln_A 81 ETYVDGQRISETTMLQSGMRLQFG 104 (120)
T ss_dssp CEEETSCBCSSCEEECTTCEEEET
T ss_pred CEEECCEEcCCCEECCCCCEEEEC
Confidence 778999999866689999999883
No 79
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=28.56 E-value=51 Score=30.69 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.2
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 003276 600 AAKVNGNLVSP--THVLANAEVVEIIT 624 (834)
Q Consensus 600 ~akvNg~~v~l--~~~L~~gd~VeIit 624 (834)
|..|||+.+.- ..+|++||+|.|=.
T Consensus 76 GT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 76 GVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CeEECCEEcCCCCcEECCCCCEEEECC
Confidence 67899999887 46799999999954
No 80
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=27.97 E-value=35 Score=31.77 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEECCEecCCCc--cCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTH--VLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~--~L~~gd~VeI 622 (834)
|..|||+.+.... +|++||+|.|
T Consensus 95 GT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEE
T ss_pred ceEECCEECCCCceeECCCCCEEEE
Confidence 7889999998765 5999999998
No 81
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=27.89 E-value=29 Score=38.12 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=25.3
Q ss_pred cccchHHHHHHHHH----HcCCCH--HHHHHHhhccccc
Q 003276 170 PFIIHPVEVARILG----ELELDW--ESIAAGLLHDTVE 202 (834)
Q Consensus 170 PYi~Hpl~VA~ILa----~l~~D~--~tI~AaLLHDvvE 202 (834)
..+.|.+.||.+.. .+++|. ...+||||||+-.
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~ 88 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGH 88 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 34799999988753 467775 4688999999854
No 82
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=27.35 E-value=55 Score=30.81 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.9
Q ss_pred EEeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 802 VCIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 802 ~~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
...|-.|+++.|++.|+++||.|--+++
T Consensus 80 ~~l~~vGi~a~is~~LA~agIsif~iSt 107 (133)
T 1zvp_A 80 SSLEAVGLTAAFATKLAEHGISANVIAG 107 (133)
T ss_dssp C--CCSCHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 3589999999999999999999988876
No 83
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.11 E-value=2e+02 Score=24.55 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=44.9
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhcccccc-----cceEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIG-----NKMVAAKVNGNLVSPTH-----VLANAEVVEIITYN 626 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~g-----~~~~~akvNg~~v~l~~-----~L~~gd~VeIit~~ 626 (834)
.|+|-+++|+. ++++...|+.|+=..|....| -.-..-..+|+...-+. -+++|++|.++-.+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 46788888864 678888999999888876632 33445566888764333 36799999987654
No 84
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=26.65 E-value=36 Score=36.43 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=25.4
Q ss_pred CCCccc-chHHHHHHHHH----HcCCCHH-----HHHHHhhcccc
Q 003276 167 SGEPFI-IHPVEVARILG----ELELDWE-----SIAAGLLHDTV 201 (834)
Q Consensus 167 sGePYi-~Hpl~VA~ILa----~l~~D~~-----tI~AaLLHDvv 201 (834)
...||. .|.+.||.+.. .+|++.+ ..+||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 456776 69999988754 4677653 44599999983
No 85
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=26.53 E-value=1.4e+02 Score=26.76 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=33.3
Q ss_pred EeCCCCCcHhHHH---hhcccccc------------------cceEEEEECCEecCC---CccCCCCCeEEEEec
Q 003276 575 KNLPKGATVVDYA---YMIHTEIG------------------NKMVAAKVNGNLVSP---THVLANAEVVEIITY 625 (834)
Q Consensus 575 ~~lp~gaT~lDfA---y~ih~~~g------------------~~~~~akvNg~~v~l---~~~L~~gd~VeIit~ 625 (834)
+. |.|+|.+|+. +.|-.+-| +...--++||++..- +++|++||.|++-..
T Consensus 25 v~-t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELTLK 98 (101)
T ss_dssp EE-ECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEEEE
T ss_pred Ec-CCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEEEe
Confidence 55 8999999874 44433322 112344788988775 457999999999643
No 86
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=26.06 E-value=1.5e+02 Score=24.35 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=44.0
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhccccc-----ccceEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEI-----GNKMVAAKVNGNLVSPTH-----VLANAEVVEIITYN 626 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~-----g~~~~~akvNg~~v~l~~-----~L~~gd~VeIit~~ 626 (834)
.|+|-+.+|+. ++++...|+.|+=..|+... --.-..-..+|+...-+. -+++|++|.++-.+
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 46777888864 67888999999988887752 223445556887764333 36799999998754
No 87
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=25.67 E-value=27 Score=30.54 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeI 622 (834)
|..|||+.+. ..+|++||+|.|
T Consensus 66 Gt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 66 GTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp CCEETTEECS-EEECCTTCEEEE
T ss_pred CEEECCEECc-eEECCCCCEEEE
Confidence 6789999887 678999999988
No 88
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=25.58 E-value=47 Score=31.28 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.0
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 003276 600 AAKVNGNLVSP--THVLANAEVVEIIT 624 (834)
Q Consensus 600 ~akvNg~~v~l--~~~L~~gd~VeIit 624 (834)
|..|||+.+.- ..+|++||+|.|=.
T Consensus 84 GT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 84 GVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp CEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CeEECCEECCCCccEECCCCCEEEECC
Confidence 67899998887 36799999999954
No 89
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=25.45 E-value=34 Score=35.26 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHc----CCCHH-HHHHHhhcccccc
Q 003276 172 IIHPVEVARILGEL----ELDWE-SIAAGLLHDTVED 203 (834)
Q Consensus 172 i~Hpl~VA~ILa~l----~~D~~-tI~AaLLHDvvED 203 (834)
+.|..+|+.....+ +.|.+ ..+||||||+.-.
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999999877544 45654 5889999999753
No 90
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=24.27 E-value=85 Score=33.16 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=30.7
Q ss_pred eEEEEEEEeCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 796 ~~~I~V~~~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
...|.+...|++|.|.++-++++..|+|+..+..+.
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP 235 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRP 235 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeE
Confidence 445666677999999999999999999999998753
No 91
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=23.91 E-value=1.7e+02 Score=25.04 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=45.7
Q ss_pred ceeeecCCCc--EEeCCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEecC
Q 003276 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIITYN 626 (834)
Q Consensus 564 ~V~VftP~G~--i~~lp~gaT~lDfAy~ih~~~g~--~~~~akvNg~~v~l~~~-----L~~gd~VeIit~~ 626 (834)
+|+|-+++|+ .++++...|+.|+-..|....|- .-..-..+|+...-+.. +++|++|.++...
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 4778888887 46788899999998887665543 23455568887654433 6799999998764
No 92
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=23.84 E-value=54 Score=31.61 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEECCEec-CCCccCCCCCeEEE
Q 003276 601 AKVNGNLV-SPTHVLANAEVVEI 622 (834)
Q Consensus 601 akvNg~~v-~l~~~L~~gd~VeI 622 (834)
++|||+.+ ..++.++.||+|+|
T Consensus 78 V~VNG~~v~~ps~~V~~gD~I~V 100 (159)
T 1c05_A 78 ILVDGSRVNIPSYRVKPGQTIAV 100 (159)
T ss_dssp EEETTEECCCSSCBCCTTCEEEE
T ss_pred EEECCEEeCcCCcEeCCCCEEEE
Confidence 78999999 58999999999988
No 93
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=23.62 E-value=52 Score=32.55 Aligned_cols=34 Identities=38% Similarity=0.514 Sum_probs=25.6
Q ss_pred CcccchHHHHHHH---HHH------cCCCHH-HHHHHhhccccc
Q 003276 169 EPFIIHPVEVARI---LGE------LELDWE-SIAAGLLHDTVE 202 (834)
Q Consensus 169 ePYi~Hpl~VA~I---La~------l~~D~~-tI~AaLLHDvvE 202 (834)
+.--.|-+.||.+ |+. -++|.+ .+..||+||+.|
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHH
Confidence 4445799988875 454 467886 788999999987
No 94
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=23.60 E-value=84 Score=30.85 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=25.5
Q ss_pred CcccchHHHHHHH---HHH-cCCCH---H-HHHHHhhccccc
Q 003276 169 EPFIIHPVEVARI---LGE-LELDW---E-SIAAGLLHDTVE 202 (834)
Q Consensus 169 ePYi~Hpl~VA~I---La~-l~~D~---~-tI~AaLLHDvvE 202 (834)
|.--.|-..||.+ |+. .++|. + .+..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 3445799999887 665 46777 4 477899999987
No 95
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=23.19 E-value=39 Score=28.38 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.2
Q ss_pred EEEECCEec-CCCccCCCCCeEEE
Q 003276 600 AAKVNGNLV-SPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v-~l~~~L~~gd~VeI 622 (834)
..+|||+.+ ...+.+..||+|+|
T Consensus 47 ~V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 47 QVKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEEECCEEecCCCCCCCCCCEEEE
Confidence 568999987 77888999998877
No 96
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=22.54 E-value=50 Score=32.65 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEECCEecCCCccCCCCCeEEE
Q 003276 601 AKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 601 akvNg~~v~l~~~L~~gd~VeI 622 (834)
..|||+.|.-.+.|++||.|-|
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 6799999988889999999977
No 97
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.51 E-value=1.8e+02 Score=23.52 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=43.9
Q ss_pred ceeeecCCCcE---Ee-CCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCc-----cCCCCCeEEEEec
Q 003276 564 RVFVFTPRGEI---KN-LPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (834)
Q Consensus 564 ~V~VftP~G~i---~~-lp~gaT~lDfAy~ih~~~g~~--~~~akvNg~~v~l~~-----~L~~gd~VeIit~ 625 (834)
.|+|-+++|+. ++ ++...|+.|+=..|+...|-. -..-..+|+...-+. -+++|++|.++..
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 47888888864 56 889999999988887765532 334455787664333 3579999988753
No 98
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=22.24 E-value=57 Score=32.94 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEECCEecC-CCccCCCCCeEEE
Q 003276 601 AKVNGNLVS-PTHVLANAEVVEI 622 (834)
Q Consensus 601 akvNg~~v~-l~~~L~~gd~VeI 622 (834)
++|||+.|. .++.++.||+|+|
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V 148 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAV 148 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEE
T ss_pred EEECCEEeCcCCcCcCCCCEEEE
Confidence 689999994 8999999999988
No 99
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=21.98 E-value=46 Score=28.55 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=26.6
Q ss_pred eeeecCCC-cEEeCCCCCcHhHHHhhcccccccce
Q 003276 565 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEIGNKM 598 (834)
Q Consensus 565 V~VftP~G-~i~~lp~gaT~lDfAy~ih~~~g~~~ 598 (834)
|.+.+|+| ..+++|.|.|.+|.|-+.+-.+...|
T Consensus 4 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C 38 (95)
T 1frr_A 4 TVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSC 38 (95)
T ss_dssp EEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSS
T ss_pred EEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCC
Confidence 44545998 88999999999999988766655544
No 100
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=21.82 E-value=52 Score=31.05 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.2
Q ss_pred EeCcccHHHHHHHHHHhCCCceeEEEE
Q 003276 803 CIDRRGIMADVTTALATVGVTICSCVV 829 (834)
Q Consensus 803 ~~DR~GlLadIt~vIa~~~iNI~sv~~ 829 (834)
..|-.|+++.|++.|+++||.|--+++
T Consensus 72 ~~~~vGilA~is~pLA~agIsif~iSt 98 (134)
T 1zhv_A 72 AFDETGIVLSVISPLSTNGIGIFVVST 98 (134)
T ss_dssp CCSSCCHHHHHHHHHHTTTCCCEEEEC
T ss_pred CccHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 348889999999999999999988876
No 101
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=21.73 E-value=93 Score=32.61 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.6
Q ss_pred EEEEEE---eCcccHHHHHHHHHHhCCCceeEEEEec
Q 003276 798 WFSVVC---IDRRGIMADVTTALATVGVTICSCVVSG 831 (834)
Q Consensus 798 ~I~V~~---~DR~GlLadIt~vIa~~~iNI~sv~~~t 831 (834)
.|.+.. .|++|.|.++-+.++..|+|+..+..+.
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP 224 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRP 224 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEee
Confidence 466667 7999999999999999999999998753
No 102
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=21.56 E-value=57 Score=34.32 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=23.9
Q ss_pred CcccchHHHHHHHHH----HcCC-CH-HHHHHHhhcccc
Q 003276 169 EPFIIHPVEVARILG----ELEL-DW-ESIAAGLLHDTV 201 (834)
Q Consensus 169 ePYi~Hpl~VA~ILa----~l~~-D~-~tI~AaLLHDvv 201 (834)
..++.|.+.||.+.. .+|. +. ....||||||+=
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIG 155 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVG 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 346799999988764 3565 44 458899999973
No 103
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=21.51 E-value=38 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=20.4
Q ss_pred EEEECCEecCC-CccCCCCCeEEEE
Q 003276 600 AAKVNGNLVSP-THVLANAEVVEII 623 (834)
Q Consensus 600 ~akvNg~~v~l-~~~L~~gd~VeIi 623 (834)
|..|||+.+.- ..+|++||+|.|-
T Consensus 88 GT~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 88 GTFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp CEEETTEECCSSCEEECSSEEEEET
T ss_pred CeEECCEEcCCCceECCCCCEEEEC
Confidence 67899999987 4789999999884
No 104
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=21.37 E-value=41 Score=30.29 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeI 622 (834)
|..|||+.+. ..+|++||+|.|
T Consensus 74 Gt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 74 GTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp CEEETTEECS-EEEECTTCEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 6789999988 578999999988
No 105
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=21.09 E-value=57 Score=37.74 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=37.4
Q ss_pred eecCCCcEEeCCCCCcHhHHHhhccccccc------------ceE--EEEECCE-ecCC-CccCCCCCeEE
Q 003276 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGN------------KMV--AAKVNGN-LVSP-THVLANAEVVE 621 (834)
Q Consensus 567 VftP~G~i~~lp~gaT~lDfAy~ih~~~g~------------~~~--~akvNg~-~v~l-~~~L~~gd~Ve 621 (834)
-|+.+|..+++|.|.|.+|+|..++-.+-. .|- .+.|||+ .+.- .+++.+|.+|+
T Consensus 3 ~~~ing~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~ 73 (574)
T 3c8y_A 3 TIIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIIN 73 (574)
T ss_dssp EEEETTEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEE
T ss_pred EEEECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEE
Confidence 478999999999999999999887542211 121 4678987 3322 34567776554
No 106
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=20.76 E-value=36 Score=31.63 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEECCEecCCCccCCCCCeEEE
Q 003276 600 AAKVNGNLVSPTHVLANAEVVEI 622 (834)
Q Consensus 600 ~akvNg~~v~l~~~L~~gd~VeI 622 (834)
|..|||+.+.- .+|++||+|.|
T Consensus 83 GT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 83 GLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp CEEETTEEESE-EECCTTCEEEC
T ss_pred ceEECCEEeEe-EECCCCCEEEE
Confidence 77899998875 88999999987
No 107
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=20.67 E-value=41 Score=31.86 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEECCEecCC--CccCCCCCeEEEEe
Q 003276 600 AAKVNGNLVSP--THVLANAEVVEIIT 624 (834)
Q Consensus 600 ~akvNg~~v~l--~~~L~~gd~VeIit 624 (834)
|..|||+.+.. ..+|++||+|.|-.
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSL 130 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CeEECCEECCCCCeEECCCCCEEEECC
Confidence 77899999885 45799999999844
No 108
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=1.1e+02 Score=24.78 Aligned_cols=61 Identities=8% Similarity=0.186 Sum_probs=42.3
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhccccccc--ceEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~g~--~~~~akvNg~~v~l~~~-----L~~gd~VeIit 624 (834)
.|+|-+++|+. ++++...|+.|+-..|+...|- .-..-..+|+...-+.. +++|++|.++-
T Consensus 9 ~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 9 QLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp EEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 46677788864 6789999999998888765542 23344567877644333 56899888764
No 109
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=20.04 E-value=2.5e+02 Score=23.61 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=45.3
Q ss_pred ceeeecCCCcE--EeCCCCCcHhHHHhhcccccccc--eEEEEECCEecCCCc-----cCCCCCeEEEEecC
Q 003276 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITYN 626 (834)
Q Consensus 564 ~V~VftP~G~i--~~lp~gaT~lDfAy~ih~~~g~~--~~~akvNg~~v~l~~-----~L~~gd~VeIit~~ 626 (834)
+|+|-+.+|+. ++++...|+.|+=..|+...|-. -..-..+|+...-+. -+++|++|.++...
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 57888888875 56888999999988887665532 234456887765443 36899999998753
Done!